BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780223|ref|YP_003064636.1| ABC transporter permease
[Candidatus Liberibacter asiaticus str. psy62]
         (360 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|172040300|ref|YP_001800014.1| permease [Corynebacterium urealyticum DSM 7109]
 gi|171851604|emb|CAQ04580.1| transporter of the putative permease family [Corynebacterium
           urealyticum DSM 7109]
          Length = 551

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 108/336 (32%), Gaps = 13/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +  F+   +   L     PVL ALI+    WP+      K    +        +
Sbjct: 160 RLLIIALAAFVASKAFGKLWVGILPVLLALIVCTVLWPVVRVLREKLHFPNALAVATTII 219

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L       +    + + +EL S+     +      +           ++   +  S
Sbjct: 220 GFFVLIAGLFALIIPPAVDQSRELASQANAGIRTIQRWLQGPPVNLQESQFNDALNQATS 279

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q+                I    +      L   +++  M++  FFF +DG      +
Sbjct: 280 WLQNQ------------SGRIASEVAAGASATLSALMTLFIMLVLTFFFLKDGEKFLPMI 327

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +       +  +      + +        +++  + + +G   +L GVP    L V+T
Sbjct: 328 RRITGRRVGWHLTEALTRCWQTLGGFIRTQALVSFIDAVFIGGGLFLMGVPLAGPLAVLT 387

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP         +S+ + + G     A    +       +    L P+L    + L
Sbjct: 388 FFAGFIPIVGATVAGVLSVLIALVGVGFKTAIFTLILVLAVQQLEGNVLSPWLQAKAMDL 447

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +     +  G    G++G F+     A+IAV+ +
Sbjct: 448 HPVIVLLAVTLGGTLFGIIGAFLAVPAAAMIAVVLR 483


>gi|68536533|ref|YP_251238.1| hypothetical protein jk1447 [Corynebacterium jeikeium K411]
 gi|68264132|emb|CAI37620.1| putative membrane protein [Corynebacterium jeikeium K411]
          Length = 608

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 110/337 (32%), Gaps = 17/337 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +   +I   + +             PV  ++I+    WP+    + K +  ++   +I+ 
Sbjct: 176 LRFIIIAAALYLGFQVFGKLWAGILPVCLSVIVCTVLWPVV-RLLRKAKIPNSLAVLISI 234

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L I     +    + + K +V++            +           ++   +  
Sbjct: 235 LGFFALIIGTFAAIAPSAVDQGKTIVNQASDGIGRIQDWLQGPPVNLQESQFNDGVQQIT 294

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q+                I    + FG       +++  M++  FFF +DG +    
Sbjct: 295 DWLQNK------------SGDIATSIAAFGTETASLLVTLFVMLVLTFFFLKDGENFLPM 342

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +       +  ++       +        I++  + + +G    L  VP    L ++
Sbjct: 343 LRRVTGRRVGWHLTEVLTRCWNTLGGFIRTQAIVSAIDAIFIGLGLVLLNVPLAGPLAIL 402

Query: 248 TAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T     IP        A+S+   L+  +   A    L       +    L+P L    + 
Sbjct: 403 TFFGGFIPMVGAFVAGALSVLIALVAVDFNTAVMALLLVVAVQQLEGNILQPVLQSRAMN 462

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  +     +  G    G++G F+     A+IAVI +
Sbjct: 463 VHPVIILLSVTLGSTLFGIIGAFLAVPCAAMIAVILR 499


>gi|260577670|ref|ZP_05845606.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
 gi|258604216|gb|EEW17457.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
          Length = 605

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 110/337 (32%), Gaps = 17/337 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +   +I   + +             PV  ++I+    WP+    + K +  ++   +I+ 
Sbjct: 173 LRFIIIAAALYLGFQVFGKLWAGILPVCLSVIVCTVLWPVV-RLLRKLKIPNSLAVLISI 231

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L I     +    + + K +V++            +           ++   +  
Sbjct: 232 LGFFALIIGTFAAIAPSAVDQGKTIVNQASDGIGRIQDWLQGPPVNLQESQFNDGVQQIT 291

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q+                I    + FG       +++  M++  FFF +DG S    
Sbjct: 292 DWLQNK------------SGDIATSIAAFGTETASLLVTLFVMLVLTFFFLKDGESFLPM 339

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +       +  ++       +        I++  + + +G    L  VP    L ++
Sbjct: 340 LRRVTGRRVGWHLTEVLTRCWNTLGGFIRTQAIVSAIDAIFIGLGLVLLNVPLAGPLAIL 399

Query: 248 TAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T     IP        A+S+   L+  +   A    L       +    L+P L    + 
Sbjct: 400 TFFGGFIPMVGAFVAGALSVLIALVAVDFNTAVMALLLVVAVQQLEGNILQPVLQSRAMN 459

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  +     +  G    G++G F+     A+IAVI +
Sbjct: 460 VHPVIILLSVTLGSTLFGIIGAFLAVPCAAMIAVILR 496


>gi|269128092|ref|YP_003301462.1| hypothetical protein Tcur_3895 [Thermomonospora curvata DSM 43183]
 gi|268313050|gb|ACY99424.1| protein of unknown function UPF0118 [Thermomonospora curvata DSM
           43183]
          Length = 529

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 36/343 (10%), Positives = 105/343 (30%), Gaps = 15/343 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  +  +++  ++   +G    ++ ++ +     P        +         +  + 
Sbjct: 201 GALGVICAWLLFEAVTSARGVIVLIVVSMFLAVGLNPAVERLQRARLPRPG-AVAVVFLG 259

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++  F+     +      ++   ++++    +                  +E   +    
Sbjct: 260 LVLAFVAAGFAVIPPLTEQITNFINQLPSYIEQLGQ--------------NERIRELDRE 305

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q L+   E     +            G        + + ++I   +F     +I     
Sbjct: 306 YQVLQKAQEAVTNPDFGQSAIDGVLGVGRALAGGVFNTLTVLILTLYFLGSLPTIKTFFY 365

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A    +   +   I     G   +A   G        +  VP  + L +   
Sbjct: 366 RLVPRSRRARVALLGDEILARIGGYVAGTLTVASIAGTTAYIFLSIMQVPFALPLALFVG 425

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I A+IP         ++  +     +F      ++  +   + +  + P ++   + +  
Sbjct: 426 ITALIPLVGATIGATLACTVAFFDGMFTGIACVIFFVVYQQVENYIIHPRVMKRAVDVQP 485

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             T    + G   +G++G  +     A +A+I +E ++  +E 
Sbjct: 486 AVTIIAALVGGTLLGIVGALLAIPTAAALALIIREVVLPRQET 528


>gi|319440952|ref|ZP_07990108.1| hypothetical protein CvarD4_04205 [Corynebacterium variabile DSM
           44702]
          Length = 503

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 115/337 (34%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R++++      L+     L     P++ ++I+    WP+      K    +    + + 
Sbjct: 117 LRFLVIAAAGYILWIGSAKLWAGILPIILSIIVCTVLWPLSRQL-RKWHFPNPLAVLTSL 175

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +F   +  +    + +  ELV K     Q                W +    +  
Sbjct: 176 LVFFGVFAGIIAAIVPSVVDQAGELVDKGTEGVQKIQD------------WVAGPPLELQ 223

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S      I   T    +  D I + A           ++++ +++  FFF +DG      
Sbjct: 224 SDQIDNAIDQATNRLQDSTDQITQTAVAGVSAVTSAIVTLVVVLVLTFFFLKDGEKFLPM 283

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +       +  +        +        I++  +   +G   ++ GVP    L +I
Sbjct: 284 VRRVTGRRVGWHITEALTRCWNTLGGFIRTQAIVSFIDAFFIGLGLFILGVPLAGPLAII 343

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T     IP     +  A+S+ + + G +   A  + L       +    L P L    + 
Sbjct: 344 TFFAGFIPIVGAFTAGALSVLVALVGNDFTTALIVLLIVIAVQQLEGNVLSPVLQSRAMN 403

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  +     +  G    G++G F+   + A+IA I +
Sbjct: 404 LHPVVVLLSVTVGGGLWGIIGAFLAVPVAAMIAEILR 440


>gi|260466876|ref|ZP_05813060.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259029378|gb|EEW30670.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 413

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 164/359 (45%), Positives = 219/359 (61%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   ++    + T
Sbjct: 31  LRSAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYRRLLASVGGNRT 90

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A  A + ++   ++P+     Y + E++E V   +  N+HG   P W++ +P      
Sbjct: 91  IAATFAILFILAFLVIPIALAGTYAINEVREWVGWAIETNRHGATTPHWIATLPVIGEWL 150

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                               +    I  I R     G       L+++FM+IALFF YRD
Sbjct: 151 NEQWTDNFGHPGGIGELIQLISGANIGSIYRGVLAAGGSAFGLLLTLLFMMIALFFAYRD 210

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVPS
Sbjct: 211 GEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVPS 270

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP L
Sbjct: 271 PVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPKL 330

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           VGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++   E  + +
Sbjct: 331 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVELADETAADS 389


>gi|307822136|ref|ZP_07652368.1| calcium-translocating P-type ATPase, PMCA-type [Methylobacter
           tundripaludum SV96]
 gi|307736702|gb|EFO07547.1| calcium-translocating P-type ATPase, PMCA-type [Methylobacter
           tundripaludum SV96]
          Length = 1256

 Score =  176 bits (447), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/351 (23%), Positives = 163/351 (46%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              Q I   ++  ++L+    L+ F   +  ALII +  WP Y     + +  +T  A +
Sbjct: 9   PIRQLIPGILLACLLLLGFMVLREFLLTLAWALIIAYVVWPPYRYLRQQLKGDATLSAAV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKV-VLANQHGIPVPRWLSDIPGGMWASELWT 124
            T  +  +  + + +L      E+K     +     Q+   +P ++S IP     ++ W 
Sbjct: 69  MTTIIAAVLFLTVYWLVAMLQDELKTAYQTLVSDFGQNTYRLPDFISRIPWLGSTAQEWL 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+  ++  I               +F    G     Y + +  +++ +FF +RDG   
Sbjct: 129 ERLTDDRAAVIAQFADWAQQWSGEFAKFLGGIGR----YIMKLGVILVTVFFCFRDGDEA 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +QL          Y            R+   G+ + A+G+G++ G  Y +AGV + V L
Sbjct: 185 VRQLHQGLVRFLGKYQDVYLEAAGHTTRAVVYGLVLAALGQGMLAGLGYAVAGVQAPVLL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G +TA++A++P GA + +  V I L++    +    L LWG + +  VD  +RP ++ G 
Sbjct: 245 GAVTALLALVPMGATLVWMPVGIVLVLTEQTWQGIGLLLWGFLVVSTVDNVIRPLVISGA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            ++PFL   FG++GG+   G +GLF+GPV++A++  +W+  +   +  ++ 
Sbjct: 305 GRIPFLVVLFGVLGGLSAFGAIGLFLGPVILAVLLSVWQAWLKLQQHEEQT 355


>gi|13476905|ref|NP_108474.1| hypothetical protein mlr8361 [Mesorhizobium loti MAFF303099]
 gi|14027666|dbj|BAB53935.1| mlr8361 [Mesorhizobium loti MAFF303099]
          Length = 411

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 165/359 (45%), Positives = 221/359 (61%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   ++    + T
Sbjct: 29  LRSAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYQRLLAGVGGNRT 88

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +A + ++   ++P+     Y + E++E V   +  N+HG   P W++ +P      
Sbjct: 89  IAATLAILFILAFLVIPIALAGTYAINEVREWVGWAIETNRHGAVTPHWIATMPVVGDWL 148

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                               +    I  I R A   G       L+++FM+IALFF YRD
Sbjct: 149 NEQWTTNFGHPGGIGELIQLISGANIGSIYRGALAAGGSAFGLLLTLLFMMIALFFAYRD 208

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVPS
Sbjct: 209 GEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVPS 268

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP L
Sbjct: 269 PVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPKL 328

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           VGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++   E  + +
Sbjct: 329 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVELVDELAAGS 387


>gi|195970204|ref|NP_384592.2| ABC transporter permease [Sinorhizobium meliloti 1021]
 gi|187904139|emb|CAC41923.2| Probable permease [Sinorhizobium meliloti 1021]
          Length = 436

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 168/355 (47%), Positives = 219/355 (61%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 70  RSALVVPISAARWLLVLILLCGVYFFHGFLVPVLAAVVIGFASWPIYWRLLQGLNGNRTL 129

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA +SV+   +VP+     Y + E+++ +   V  N +G P P WL+ IP       
Sbjct: 130 AATIAIISVVAFIVVPISLAAIYAVEEVRDWLVWAVATNANGAPAPAWLATIPAVGAWLG 189

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +  + I  I R     G       L+++FM+I LFF YRDG
Sbjct: 190 EQWVKYVGHPGALGELVQLVSGSNIGNIYRGVLVVGASAFQSFLTLLFMLITLFFVYRDG 249

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS 
Sbjct: 250 QSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPSP 309

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LG++T IMA+IPGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP LV
Sbjct: 310 VTLGILTGIMALIPGGAPLCFTLVSVYLVASGSPVHGIALFTWGTTELFIVDKTLRPRLV 369

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           GGPIKLPFLPTFFGL+GGV+TMG LGLF+GPVLMAL+  IW+E +  +    E  
Sbjct: 370 GGPIKLPFLPTFFGLIGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPEPP 424


>gi|221641060|ref|YP_002527322.1| hypothetical protein RSKD131_2961 [Rhodobacter sphaeroides KD131]
 gi|221161841|gb|ACM02821.1| Hypothetical Protein RSKD131_2961 [Rhodobacter sphaeroides KD131]
          Length = 424

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 146/349 (41%), Positives = 201/349 (57%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+  S+YF  GF  PVL+ALII F SWP+          S   
Sbjct: 36  RRPLITDISAARWLLLLILAASVYFFHGFLVPVLAALIIAFASWPLMLKLERSLPISRGI 95

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P       
Sbjct: 96  AGALLVMMIVGFLVIPVMMALLYAFRELQAWIGWAINTNSTGAPPPVWLEALPHVGPWVG 155

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +               +    I  I R     G +     L+++FM+IALF FYRDG
Sbjct: 156 EKWRTYIGEPGAISEMVQLVSGANIGTISRGILTAGTLAFHLALTLLFMLIALFIFYRDG 215

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+PS 
Sbjct: 216 ERIAAQVDRVGTRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMPSP 275

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGVIT  MA+IPGGAP      S YL   G+ +    LFLWG +ELF+VDKT+RP LV
Sbjct: 276 VTLGVITGFMALIPGGAPFCVIVASSYLAASGSPWAGLGLFLWGTVELFVVDKTIRPVLV 335

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    I 
Sbjct: 336 GGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVAMWREWQREID 384


>gi|154507713|ref|ZP_02043355.1| hypothetical protein ACTODO_00194 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797347|gb|EDN79767.1| hypothetical protein ACTODO_00194 [Actinomyces odontolyticus ATCC
           17982]
          Length = 494

 Score =  169 bits (429), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 111/355 (31%), Gaps = 4/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++ + ++   ++  +L  +  L     PV  AL +     P+ S    +    S+  A +
Sbjct: 64  ISWRTLVVAGLVMAVLWGIARLTIVIMPVAIALTVTVLLEPLVSWMRRRLHFPSSLAATV 123

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +         L       + ++  L S+     +  +        +  G    +  T 
Sbjct: 124 GLLVFFAAVAGALSQAAAELIQQVPYLASQAADGFRKLLDAIAHNEFLHDGPLKMD--TT 181

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L++                 + +   A            S + M+  LFFF ++G SI 
Sbjct: 182 VLTNAAEQLRSELVNWLNTNKETLATGALNITSSVGTLATSALTMLFCLFFFLKEGRSIW 241

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L          + +        S       +A  + L +    +  GVP  + +G
Sbjct: 242 LWCVRLLPAPARVPVHESAIRGWATFGSYVRTQIQVAAIDALGIALGAFFLGVPLAIPIG 301

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT   A +P    ++      +   + G +  A  + +   +   +    L+PF++   
Sbjct: 302 VITFFAAFVPILGALTSGVIAVLVAAVNGGLTKAIIMLVIILVVQQVESNILQPFMMSNA 361

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + L  +     +  G    G+ G      + A I       +       E  ++ 
Sbjct: 362 VSLHPVAVMLVITAGSAIAGIAGAIFSVPIAAFINATVM-YLHGYDPMPELATAE 415


>gi|319784191|ref|YP_004143667.1| hypothetical protein Mesci_4507 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170079|gb|ADV13617.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 401

 Score =  169 bits (428), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 163/356 (45%), Positives = 219/356 (61%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R  ++ P    RW+++ I+   +YF  GF  PVL+AL+I F SWP+Y   +     + T
Sbjct: 22  LRAAVIPPLSAARWLLVLIVAAGVYFFHGFLFPVLAALVIAFASWPLYRRLLVAVGGNRT 81

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A  A + ++   ++P+     Y + E++E V+  +  N+HG   P W++ +P      
Sbjct: 82  IAATFAILFILAFLVIPIALAGTYAINEVREWVAWAIETNRHGAVTPHWIATMPVVGEWL 141

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                               +    I  I R     G       L+++FM+IALFF YRD
Sbjct: 142 NEQWTTNFGHPGGIGELIQLVSGANIGSIYRGVLAAGGSAFGLLLTLLFMMIALFFAYRD 201

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   + Q+D LGE + P  W++ISR+VP  I ST  GMT+IAIGEGLVLG AYWLAGVPS
Sbjct: 202 GEHFAGQVDRLGERILPTRWERISRVVPATISSTVTGMTVIAIGEGLVLGIAYWLAGVPS 261

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG +T +MA+IPGGAP+SFT VSIYL   G+      LFLWGA+ELFIVDKTLRP L
Sbjct: 262 PVTLGALTGVMALIPGGAPLSFTLVSIYLAASGSPMAGLALFLWGAVELFIVDKTLRPKL 321

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           VGGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMAL+  IW+E +  ++  ++ +
Sbjct: 322 VGGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALLVAIWREWLREVEMAEDVV 377


>gi|300934058|ref|ZP_07149314.1| hypothetical protein CresD4_08309 [Corynebacterium resistens DSM
           45100]
          Length = 566

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 99/322 (30%), Gaps = 14/322 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+  +  ++  +    L     PVL +LI+    WP+  +   K +  +     +  +
Sbjct: 147 RFIIMGVAAYVASLVFAKLWSGILPVLLSLIVCTVLWPVVRTL-RKFKIPNGIAVALTIL 205

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L       +    + + ++L ++            +                    
Sbjct: 206 GFFALIGGIFAAIAPSAVEQSRKLATQANDGIGEVRQWLQ------------GPPVNLQE 253

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   T         I   A+      L   +++  M++  FFF +DG      L
Sbjct: 254 SQFEDAVNQATEWLQQKSGDIASQAAAGASATLSALVTLFIMLVLTFFFLKDGEKFLPML 313

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +       +  ++       +        I++  +   +G    +  VP   AL ++T
Sbjct: 314 RRVTGRRVGWHLTEVLTRCWNTLSGFIRTQAIVSFIDAFFIGLGLVILDVPLAGALAILT 373

Query: 249 AIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP        A+S+   L+  N+  A  +         +    L+P L    + +
Sbjct: 374 FFGGFIPMVGAFVAGALSVLIALVAINVQTALIVLAIVVAVQQLEGNILQPLLQSRAMDI 433

Query: 308 PFLPTFFGLVGGVRTMGLLGLF 329
             +     +  G    G++G F
Sbjct: 434 HPVIVLLSVTLGSTLFGIIGAF 455


>gi|77462103|ref|YP_351607.1| putative transmembrane transport protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126460992|ref|YP_001042106.1| hypothetical protein Rsph17029_0215 [Rhodobacter sphaeroides ATCC
           17029]
 gi|77386521|gb|ABA77706.1| Putative transmembrane transport protein [Rhodobacter sphaeroides
           2.4.1]
 gi|126102656|gb|ABN75334.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 406

 Score =  167 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 146/349 (41%), Positives = 201/349 (57%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+  S+YF  GF  PVL+ALII F SWP+          S   
Sbjct: 28  RRPLITDISAARWLLLLILAASVYFFHGFLVPVLAALIIAFASWPLMLKLERSLPISRGI 87

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P       
Sbjct: 88  AGALLVMMIVGFLVIPVMMALLYAFRELQAWIGWAINTNSTGAPPPVWLEALPHVGPWVG 147

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +               +    I  I R     G +     L+++FM+IALF FYRDG
Sbjct: 148 EKWRTYIGEPGAISEMVQLVSGANIGTISRGILTAGTLAFHLALTLLFMLIALFIFYRDG 207

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+PS 
Sbjct: 208 ERIAAQVDRVGTRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMPSP 267

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGVIT  MA+IPGGAP      S YL   G+ +    LFLWG +ELF+VDKT+RP LV
Sbjct: 268 VTLGVITGFMALIPGGAPFCVIVASSYLAASGSPWAGLGLFLWGTVELFVVDKTIRPVLV 327

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    I 
Sbjct: 328 GGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVAMWREWQREID 376


>gi|86357805|ref|YP_469697.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281907|gb|ABC90970.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 398

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 166/352 (47%), Positives = 222/352 (63%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +S+   ++T 
Sbjct: 21  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLSRVGGNTTI 80

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA V ++   ++P+     Y   E++  V+  + AN+ G   P W+  +P      +
Sbjct: 81  AATIAIVMIVTFLVIPIGLAVTYTTGEVRNWVTWAIHANRTGAATPDWIVALPWAGAYLD 140

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YRDG
Sbjct: 141 DVWTKYIGSPGALGELIQAVSGANIGNIYRALLAAGGGAFHLLLTLLFMLIALFFVYRDG 200

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           FS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS 
Sbjct: 201 FSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGVAYWIAGVPSP 260

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VS+YLL  G+      LF+WG +ELFIVDKTLRP LV
Sbjct: 261 VTLGVLTGVMALIPGGAPLSFTLVSVYLLASGSHAAGIALFVWGTVELFIVDKTLRPKLV 320

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GGPIKLPFLPTFFGL+GGV+TMG LGLFIGPVLMALI  IW+E I   +  +
Sbjct: 321 GGPIKLPFLPTFFGLIGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAE 372


>gi|293189386|ref|ZP_06608109.1| putative permease [Actinomyces odontolyticus F0309]
 gi|292821849|gb|EFF80785.1| putative permease [Actinomyces odontolyticus F0309]
          Length = 458

 Score =  166 bits (421), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 114/355 (32%), Gaps = 4/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++ + ++   ++  +L  +  L     PV  AL +     P+ S    +    S+  A +
Sbjct: 28  ISWRTLVVAGLVLAVLWGIARLTIVIMPVAIALTVAVLLEPLVSWMRRRLHFPSSLAATV 87

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    +    L       + ++ +L S+     +  +     + +        ++ T 
Sbjct: 88  GLLVFFAVVAGALSQAAAELIQQVPQLASEAADGFRKLLDAI--VHNEFLQDGPLKIDTT 145

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+               +  + +   A            S + M+  LFFF ++G SI 
Sbjct: 146 VLTAAAEQLRSELVNWLNSNKETLATGALSITSSVGTLATSGLTMLFCLFFFLKEGRSIW 205

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L          + +        S       +A  + + +    +  GVP  + +G
Sbjct: 206 LWCVRLLPAPARVPVHESAIRGWATFGSYVRTQIQVAAIDAIGIALGAFFLGVPLAIPIG 265

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT   A +P    ++      +   + G +  A  + +   +   +    L+PF++   
Sbjct: 266 VITFFAAFVPILGALTSGVIAVLVAAVNGGLTKAIIMLVIILVVQQVESNILQPFMMSNA 325

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + L  +     +  G    G+ G      + A I       +       E  ++ 
Sbjct: 326 VSLHPVAVMLVITAGSAIAGIAGAVFSVPIAAFINATVM-YLHGYDPMPELATAE 379


>gi|146279074|ref|YP_001169233.1| hypothetical protein Rsph17025_3044 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557315|gb|ABP71928.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 398

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 146/349 (41%), Positives = 202/349 (57%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ ++      RW+++ I+  S+YF  GF  PVL+A+II F SWP+              
Sbjct: 20  RKPLITDISAARWLLLLILAASVYFFHGFLVPVLAAVIIAFASWPLLQRLERSLPIGRAG 79

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  + ++   ++P++    Y   E++  +   +  N  G P P WL  +P       
Sbjct: 80  AGALLLMMIVGFLVIPVMMALLYAFRELQSWIGWAINTNSLGAPPPVWLETLPHVGPWIG 139

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +               +    I  I R     G +     L+++FM+IALF FYRDG
Sbjct: 140 EKWRAYIGEPGAISEMVQLVSGANIGTISRGILTAGTLAFHLALTLLFMLIALFIFYRDG 199

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+ Q+D +G  + P  W +ISR+VP  I ST  GMT+IA+GEG+VLG+AYW+AG+PS 
Sbjct: 200 ERIAAQVDRVGSRILPDRWDRISRVVPATISSTVTGMTLIAMGEGVVLGTAYWIAGMPSP 259

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGVIT  MA++PGGAP    A S YL   G+ +    LFLWG IELFIVDKT+RP LV
Sbjct: 260 VTLGVITGFMALVPGGAPFCVVAASSYLAASGSPWAGLGLFLWGTIELFIVDKTIRPVLV 319

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGP+KLPFLPTFFGLVGG+ TMG++GLF+GPVLMAL+  +W+E    I 
Sbjct: 320 GGPVKLPFLPTFFGLVGGIETMGIVGLFVGPVLMALLVSMWREWQREID 368


>gi|294786614|ref|ZP_06751868.1| putative membrane protein [Parascardovia denticolens F0305]
 gi|315226201|ref|ZP_07867989.1| hypothetical integral membrane protein [Parascardovia denticolens
           DSM 10105]
 gi|294485447|gb|EFG33081.1| putative membrane protein [Parascardovia denticolens F0305]
 gi|315120333|gb|EFT83465.1| hypothetical integral membrane protein [Parascardovia denticolens
           DSM 10105]
          Length = 546

 Score =  164 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 106/348 (30%), Gaps = 20/348 (5%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +G+   +I   + + ++     + G    V+ AL I     P+    +          A 
Sbjct: 42  RGLFYTVIAIFLGIFVWNSWPKISGVVFYVIVALFISLALEPLIIRLVKH-GWKRGAAAG 100

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  + + I          + +  +L++ +                       S    
Sbjct: 101 VTIIGFVVVVIAFFSVFGIMLVQQATKLIATIPNTYNDIRN------------SISSWTG 148

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L     L   +   L  +G  ++ +         +   ++I+ +++  ++    G  +
Sbjct: 149 YELPKMNDLSTSALRELSRHGQGYLGQ-LYSTVSSVVSGLMAILTILLVAYYISAAGPKL 207

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +           +  I   V   I +      I+AI  G  L     L  +P  + L
Sbjct: 208 RRSVCKWIPRRSQRKFIVIWTTVQGQISNYLYSRFILAILNGTFLALFMILLKIPYWLPL 267

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     +      I          A  L ++  +   I +   +P +  
Sbjct: 268 AIWCGLVSQFIPTIGTYLGGVIPIISAWGTNGWQYAVYLLIYITVYQQIENMLFQPRVSK 327

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + L     F  +       G LG F+   + A I  + +  + +  
Sbjct: 328 DTMDLNPAVAFLSVFFFGGLFGALGAFLALPITASIQALLQAYMRSYD 375


>gi|160881382|ref|YP_001560350.1| hypothetical protein Cphy_3257 [Clostridium phytofermentans ISDg]
 gi|160430048|gb|ABX43611.1| protein of unknown function UPF0118 [Clostridium phytofermentans
           ISDg]
          Length = 540

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 115/359 (32%), Gaps = 17/359 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------------EESSTFLAVIA 66
           +IL++  ++ G   P +    I F        F  K             +       +++
Sbjct: 30  VILMTFKYILGILTPFILGGCIAFILNVPLCLFEDKLFRKGKTKNRFVNKIRRPVSILLS 89

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-----WLSDIPGGMWASE 121
            + V  +       +         +L   + +  Q             L   P    + +
Sbjct: 90  IILVASIIFTVTFLIIPELGSTFGDLADTITVFVQDAQKWVEIKSADLLIQYPEIGNSFK 149

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            ++K  ++  +  +     L    +                + +  +F +  L    +  
Sbjct: 150 EFSKDWANLSAGLVSILKGLVYGVLGSAFSIILNIISGLTTFFIGFVFAVYILGNKEKLS 209

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +   S            + ++  +   +   G  I A+  G +      +   P  
Sbjct: 210 EQGKKLCYSFLSLKRADRTIMVLQLAHRTFSNFLSGQCIEAVILGSMFYITLSVLRFPYA 269

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +GV+ +  A+IP    I  + +  +L+   N   A    +   +   I    + P +V
Sbjct: 270 LLIGVLISFTALIPIVGGIIGSIIGTFLIFMVNPVQALWFIVIFNVLQQIEGNLIYPRVV 329

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           GG + LP +   F +  G   MG+LG+ I   L +++  + +E++      ++     +
Sbjct: 330 GGSVGLPSIWVLFAVTIGGSLMGILGMLIFIPLTSVVYTLLRENVKVRLNQRQIPEEKY 388


>gi|254780223|ref|YP_003064636.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039900|gb|ACT56696.1| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 360

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 360/360 (100%), Positives = 360/360 (100%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST
Sbjct: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS
Sbjct: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD
Sbjct: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS
Sbjct: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL
Sbjct: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF
Sbjct: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360


>gi|218672333|ref|ZP_03522002.1| putative permease protein [Rhizobium etli GR56]
          Length = 413

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 167/349 (47%), Positives = 223/349 (63%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 21  RTPLIPSISAARWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 80

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   ++P+ F   Y   E++  ++  + AN+ G   P W++ +P      +
Sbjct: 81  AATIAIIMIVTFLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLD 140

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YRDG
Sbjct: 141 ELWTKYIGSPGALGELIQAVSGAHIGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDG 200

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           FS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS 
Sbjct: 201 FSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSP 260

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LV
Sbjct: 261 VTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGVGLFVWGTVELFIVDKTLRPKLV 320

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +
Sbjct: 321 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR 369


>gi|220926415|ref|YP_002501717.1| putative phytochrome sensor protein [Methylobacterium nodulans ORS
           2060]
 gi|219951022|gb|ACL61414.1| putative phytochrome sensor protein [Methylobacterium nodulans ORS
           2060]
          Length = 805

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 108/352 (30%), Gaps = 30/352 (8%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + +  LYF +  F P   A+++ F   P+ +     +       AV+  V++  + I 
Sbjct: 26  IVLAIAGLYFGRDIFVPFALAILLSFALTPLVNWLRRWRLPR--IAAVLVAVTLAFILIA 83

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            + F+      ++ +L + +           R L     G    +  T  +         
Sbjct: 84  GIAFVVG---RQLVQLANNLPSYQTTITDKIRSLQASAPGGGIVDKVTTTIKDVGKEISG 140

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDY-----------------------CLSIIFMIIA 173
            +            R  S      +                           +   ++I 
Sbjct: 141 EQPADNAPAQTPGSRLGSGTAQEPVTVRLEAPRAKPLEIIQTVVGPLLAPLATAGLVVIF 200

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           + F   +   +  +   L          +        +    L   ++ +  G+ +G A 
Sbjct: 201 VIFVLLEREDLRDRFIKLAGAGDLQKSTQAINDAAARVSRYLLMQLVVNLTYGIPIGIAL 260

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +  GVP+ +  G++ A++  IP   P       +++ + +         +         I
Sbjct: 261 YFIGVPNALLWGLLAAVLRFIPYLGPFLAALFPIALAVAVDPGWTMLFWVVGVFLAAELI 320

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  + P+L G    L  L      +      G +GLF+   L   + VI +
Sbjct: 321 SNNVIEPWLYGSSTGLSSLAIIMAAIFWTSLWGPVGLFLATPLTVCLVVIGR 372


>gi|315606054|ref|ZP_07881085.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312336|gb|EFU60422.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 495

 Score =  163 bits (412), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 98/320 (30%), Gaps = 3/320 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
                L     PV  AL +     P+ S    K     +  A +  +    +    L   
Sbjct: 80  WGAARLTIVIMPVAIALTVAVLLEPLVSWMRRKLHFPPSLAAAVGLLVFFAVITGALSQA 139

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++ +L ++     +  +        +  G    +  T  L+H            
Sbjct: 140 AAELIQQVPQLATQAADGFRALLDTITHNEFLKNGPLKID--TTVLNHWVDQLRSELVGW 197

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                + +   A            S + M+  LFFF ++G SI      L          
Sbjct: 198 LNTNKEALATGALNITSSVGTLATSGLTMLFCLFFFLKEGRSIWLWCVRLLPARARVPVY 257

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           + S        S       +A  + + +    +  GVP  + +GVIT   A +P    ++
Sbjct: 258 ESSIRGWATFGSYVRTQIQVAAIDAIGIALGAFFLGVPLAIPIGVITFFAAFVPILGALT 317

Query: 262 -FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 +   + G +  A  + +   +   +    L+PF++   + L  +     +  G 
Sbjct: 318 SGVIAVLVAAVNGGLTKAIIMLVIILVVQQVESNILQPFMMSNAVSLHPVAVMLVITAGS 377

Query: 321 RTMGLLGLFIGPVLMALIAV 340
              G+ G      + A I  
Sbjct: 378 AIAGIAGAVFSVPIAAFINA 397


>gi|319945201|ref|ZP_08019463.1| permease [Lautropia mirabilis ATCC 51599]
 gi|319741771|gb|EFV94196.1| permease [Lautropia mirabilis ATCC 51599]
          Length = 433

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 143/354 (40%), Gaps = 3/354 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + +      +  + L  L  L  F++ ++ A+I+     P+  + + +  + +     I
Sbjct: 5   SDRRYFFVGFLALVSLAFLAILLPFYSALMWAVILAMLFAPMQRALMRRMPQRANTATFI 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              +V+ + I+P++ L    + +  ++ S++   + +       + +   G     L  +
Sbjct: 65  TLGAVIMMVIIPVIGLTMSLVNQGAQIYSRIRSGDLNFGAYLAKIIEAMPGWLHRMLDAQ 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L    S++        +    F+   A   G   +D   S   ++  LFF  RDG  + 
Sbjct: 125 GLLDLPSIQRRLADS-GSEIGQFLASQAVNIGQNTVDALASTGVLLYVLFFLLRDGGQLV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                    L       +      V+++T  G   +AI +G++ G   W  G+   +   
Sbjct: 184 AMFYRAIP-LEDEPKNHLLGKFSAVVKATVKGNVAVAIVQGVLGGIILWALGIKGVILWS 242

Query: 246 VITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+ A ++++P     + +  +++Y L  G  +    L  +G   + +VD  LRP LVG  
Sbjct: 243 VVMAFLSLLPAVGSGLIWGPIALYFLATGATWQGVVLLAYGVGVIGMVDNVLRPVLVGKN 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            K+P        +GG+   GL G  IGP++ AL    W   +   ++  E++  
Sbjct: 303 TKMPDYVVLVSTIGGMSLFGLNGFVIGPLIAALFMAAWDLYVAPDRDRDEEVHE 356


>gi|318061004|ref|ZP_07979725.1| hypothetical protein SSA3_23870 [Streptomyces sp. SA3_actG]
 gi|318079871|ref|ZP_07987203.1| hypothetical protein SSA3_25091 [Streptomyces sp. SA3_actF]
          Length = 465

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 110/357 (30%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  +++         + + L G    VL A  +     P  S   ++     
Sbjct: 2   PRWLPRAMVSALLLIACFQLGTWAFHRLTGLLINVLIAFFLALAIEPAVSWMSAR-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + V+      +  L      +++ +V          I             W 
Sbjct: 61  GAATGLVFLGVLIFAAGFVTLLGSMLAGQIQNMVEDFPKYLDSVIK------------WV 108

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  +   LS  +    +  +      +              L     ++ +++  F+F  
Sbjct: 109 NGTFHTELSRLEVQDSVLHSDWLQRYVRNSASGVLDVSAQVLGGLFQLLTLLLFAFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+     +   G+P
Sbjct: 169 DGPRLRRALCSVLPPAKQAEVLRAWEIAVDKTGGYLYSRGLMALISGIAHYILFQALGIP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              ALGV   +++  IP        A+ + +    + + A  + ++  I     +  L+P
Sbjct: 229 YAPALGVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYAVWVLVFVVIYQQFENYLLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  +    +A +       +       + 
Sbjct: 289 KLTARTVDIHPAVAFGSVIAGTALLGAVGALVSIPAVATLQAFLAAYVKRYDVTDDP 345


>gi|119386380|ref|YP_917435.1| hypothetical protein Pden_3672 [Paracoccus denitrificans PD1222]
 gi|119376975|gb|ABL71739.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 396

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 151/357 (42%), Positives = 214/357 (59%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +L      RW+++ I+  S+YF  GF  PVL+A++I   SWP+      +     T+
Sbjct: 34  RPPLLTNISAARWLLLAIVAASIYFFHGFLVPVLAAMVIALASWPLRERAAHQLNLGRTW 93

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A    + ++C  ++P+     Y   E+++ ++  +L N  G   P W+ D+P      +
Sbjct: 94  AAAALVLVLVCFLLIPIAMALIYAFRELRDWINWAILVNSSGAATPGWMVDLPQIGDWLD 153

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +               +  + I  I R A   G +     L+++FM+I LF  YRDG
Sbjct: 154 ENWQTYIGRPGGISEIVQLVSGSNIGAIYRGAVTAGTLAFHLALTLLFMLITLFVLYRDG 213

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I  Q+D +G  + P  W ++SR+VP  I ST  GMT+IAIGEG++LG AYWLAGVPS 
Sbjct: 214 DKIVAQIDQVGRRILPDRWSRLSRVVPATISSTVTGMTLIAIGEGVILGIAYWLAGVPSP 273

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V  GVIT  MA+IPGGAP+SFT VSIYL+  G+      LF+WG  ELF+VDKT+RP LV
Sbjct: 274 VTFGVITGFMALIPGGAPLSFTLVSIYLVASGSPVAGAALFVWGTCELFVVDKTIRPVLV 333

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GGP+KLPFLPTFFGL+GGV+TMG++GLF+GPVLMAL+  IW+E    + E +++  S
Sbjct: 334 GGPVKLPFLPTFFGLIGGVKTMGIVGLFVGPVLMALLVSIWREWQRELSEEEQRQDS 390


>gi|294790628|ref|ZP_06755786.1| putative membrane protein [Scardovia inopinata F0304]
 gi|294458525|gb|EFG26878.1| putative membrane protein [Scardovia inopinata F0304]
          Length = 530

 Score =  162 bits (411), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 106/347 (30%), Gaps = 16/347 (4%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +G++  +I   + + ++     +      ++ +L I     P+    I       +  ++
Sbjct: 72  RGLLYAVIAVFLAIFVWNSWSKISSVVFYIIVSLFIALALEPLILRLIRH-GWKRSAASL 130

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +   S + L +V L       + ++ +++  +              +             
Sbjct: 131 VVLASFVILVVVFLSMFGLLLVQQLTKMIENLPNTYSDIRRNIISWTGYHLPKKL----- 185

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  +  +     +  NG       A      FL   L+I+ +++  ++    G  +
Sbjct: 186 ----DFGTNLLSFLNKINKNGAQGYISQAYSTVSSFLSGLLAILTILLVTYYICAAGPRM 241

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L           +  +   V   I +      +++I   + +     +  +P  + L
Sbjct: 242 RRSLCKWLPRKSQRKFIVVWTTVQTQISNYLYSRFLLSIISAICMSIFMIVMKIPYWLPL 301

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     +      +          A  L ++  +   I +  L P +  
Sbjct: 302 SIFCGLVSQFIPTIGTYLGGLVPIVSAWGTNGWQYAVYLLIYIVVYQQIENLILSPRISK 361

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + L        +       G LG F+   + A +  +    + + 
Sbjct: 362 DTMDLNPAIALLSVFFFGDLFGALGAFLALPITASLQALLSAYMRSY 408


>gi|270284414|ref|ZP_05966064.2| putative membrane protein [Bifidobacterium gallicum DSM 20093]
 gi|270276818|gb|EFA22672.1| putative membrane protein [Bifidobacterium gallicum DSM 20093]
          Length = 607

 Score =  162 bits (410), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 108/348 (31%), Gaps = 19/348 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R  +   + +M  +I   +    Y     +      ++ AL +     P+    I     
Sbjct: 81  RPPLWLSRALMYAVIAVFVGYFCYRTWFKISYIVLDIVIALFLSLAVEPLVLRLIRH-GW 139

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                AV   V ++ + +  +       + +   ++  +       +      +      
Sbjct: 140 RRGVAAVTCLVGLLLIIVGLMAAFGNLFVQQFISMMKGLPAVYDDLVTTVEQYTKFR--- 196

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    L    ++       ++++ I      A    +  L   L++   I+  F+ 
Sbjct: 197 ---------LPEISAIGPEILKNVQSSWITNFAGTAVSTAVEVLGGVLNLTTAIMVAFYI 247

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G  + + +           +     +V     +     TI+A      +     +  
Sbjct: 248 SIAGPRLRRSVCHWLAPSTQRRFLLAWTVVQDQTSNYLFSRTILAACSATCMAIFLMIIH 307

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKT 295
           VP  + L + + +++  +P        A+ +        I+ A  + ++  +   I +  
Sbjct: 308 VPYWLPLALFSGVVSQFVPTIGTYLGGALPVLFAWGDRGIWYAVGVVVFITVYQQIENLL 367

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L P +    + +     F  ++      G LG F+   + A I V++K
Sbjct: 368 LSPKVSERTMDINPCVAFLTVLFFGSIFGALGAFLALPITASIQVLFK 415


>gi|325293121|ref|YP_004278985.1| permease [Agrobacterium sp. H13-3]
 gi|325060974|gb|ADY64665.1| permease [Agrobacterium sp. H13-3]
          Length = 412

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 163/349 (46%), Positives = 221/349 (63%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ + L  +YF  GF  PVL+AL+IGF SWP+Y+  + +   ++T 
Sbjct: 23  RIALIPPISAARWLLVLVALAGIYFFHGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTL 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   +VP+     Y   E++E     V  N+ G PVP W++ +PG      
Sbjct: 83  GASIAIILILTFLVVPIFIAASYTASEIREWFGWAVHVNKVGAPVPDWIAALPGVGSWLG 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YR+G
Sbjct: 143 EQWVKYIGTPGAIGEVIQLVSGANIGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRNG 202

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S Q+D +GE + P  W++ISR+VP  I ST  GMT+IAIGEG++LG AYW+AGVPS 
Sbjct: 203 AGFSHQVDLVGERILPTRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPSP 262

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VSIYL+  G+      LF+WG++ELFIVDKT+RP LV
Sbjct: 263 VTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAYGLGLFIWGSVELFIVDKTIRPKLV 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMAL+  IW+E +  ++
Sbjct: 323 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVE 371


>gi|305680242|ref|ZP_07403050.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
 gi|305659773|gb|EFM49272.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
          Length = 478

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 105/339 (30%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++IM      L+     +     PVL A+I+    WP       K +  S    VI
Sbjct: 84  WALRFIIMVAAGYLLWRGLALVWEGLLPVLLAIIVSTVLWPPVRWL-RKHKVPSALSVVI 142

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++   +       +      + K+L  +     +      +                 
Sbjct: 143 VLITFFAILGGIFTAMAPSITTQSKDLAEQATKGIEQLQQWIQ------------GPPLN 190

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +  I   +    N +  I               ++ + M++  FFF +DG    
Sbjct: 191 IDLGHYNDIIDQISTFLQNRVTDIASRVVSGISTAGSIVVTFVLMLVLTFFFLKDGEGFL 250

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +     +    +  ++   +   +        II+  +   +     +  VP   AL 
Sbjct: 251 PMIRRTTGYNVGWHLTEVLTRIWNTLSGFIRVQAIISFVDASCICIGLLILHVPLAPALA 310

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT   + IP    +       I  L+   + NA  +         +    L+P L    
Sbjct: 311 VITFFASFIPIVGALVAGALAVIIALVSNGVTNALLVLAIIIAVQQLEGHILQPVLQSKA 370

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A ++V+ +
Sbjct: 371 MNLHAAIVLLSVTIGSTMFGVVGAFLAVPVAATLSVLVR 409


>gi|325684459|gb|EGD26623.1| permease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 396

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 115/335 (34%), Gaps = 4/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 48  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 107

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       L   P      +   K ++        + +    + 
Sbjct: 108 QSQIDSLVKNWPTIWKNSTNAVDELLHSPKFSGLRDSLQKQMTS----LQKNFSKSMGST 163

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +       +    +      ++      LFF  +DG  +   L       +     K+  
Sbjct: 164 VSSALGNLTSAVTVATAVFTTLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V + + S  +G   +AI  G++L   Y + G P   AL + +  + +IP          
Sbjct: 224 EVNQAVSSYVIGQVSVAICVGIMLFIGYTIIGEPYGAALAICSGFLNLIPYFGTFIGLIP 283

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  ++     + +   IE  I  + + P +VG  +K+    T   ++G     GL
Sbjct: 284 ALIIALVTDLSMVAKVLVVFFIEQIIETRVISPLVVGNRLKMHPATTIIVMLGAGSVWGL 343

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            G+  G  + A++ ++        ++       +F
Sbjct: 344 WGVIGGIPIYAVMKILLTHVYRYYRKVSHLYDDSF 378


>gi|227820705|ref|YP_002824675.1| predicted transmembrane protein [Sinorhizobium fredii NGR234]
 gi|227339704|gb|ACP23922.1| predicted transmembrane protein [Sinorhizobium fredii NGR234]
          Length = 391

 Score =  161 bits (408), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 173/356 (48%), Positives = 222/356 (62%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RWM++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVLPISAARWMLVLILLAGVYFFHGFVVPVLAAVVIGFASWPIYRRLLQALNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA +SV+   +VP+     Y + E+++ +   V  N +G PVP WL+ IP       
Sbjct: 85  AATIAIISVIAFIVVPISIAAAYAIDEVRDWLVWAVETNVNGAPVPAWLTTIPVAGAWLG 144

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +  + I  I R     G       L+++FM+I LFF YRDG
Sbjct: 145 QQWVKYVGHPGALGELVQLVSGSNIGNIYRGVLVIGASAFQSFLTLLFMLITLFFVYRDG 204

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS 
Sbjct: 205 HSFSKQLDRLGEQIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPSP 264

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LG+IT +MA+IPGGAP+ FT VSIYL+  G+ F+   LF WG  ELFIVDKTLRP LV
Sbjct: 265 VTLGIITGLMALIPGGAPLCFTLVSIYLVASGSPFHGVALFAWGTTELFIVDKTLRPRLV 324

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           GGPIKLPFLPTFFGLVGGV+TMG LGLF+GPVLMAL+  IW+E +  +    E  +
Sbjct: 325 GGPIKLPFLPTFFGLVGGVKTMGFLGLFVGPVLMALLVAIWREWMHEVANQPEPTA 380


>gi|74318686|ref|YP_316426.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Thiobacillus denitrificans ATCC 25259]
 gi|74058181|gb|AAZ98621.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Thiobacillus denitrificans ATCC 25259]
          Length = 665

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 45/345 (13%), Positives = 118/345 (34%), Gaps = 11/345 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +     + +  + +Y L     P L+  ++ +   P+     +++   +   A++  ++
Sbjct: 11  WLALGATLLVAGLLIYLLGPILTPFLAGALLAYIFDPLVDRLEARRIPRAAGTAIVIVLA 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + LF + L+ L      +  EL  +V                     W    +   +S 
Sbjct: 71  GLILFGLLLVAL-PLFQGQFAELSQRVPAGLDLLQT--------RFLPWVERTFGIAVSP 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                    T   T              +  +   ++++ + + +F+  +D   I  ++ 
Sbjct: 122 HLDGLKAWLTEKATQQGANWLPRLQTGALAIIGALVNLLLIPVVMFYLLKDWDVIVGRVA 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    +    ++I   +  V+     G   + I   +    A W  G+   + +GV+T 
Sbjct: 182 ALAPRPWLPAARRIGSAMNAVVGEFLRGQLAVMITLSVYYSVALWAVGLDYALPIGVLTG 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +++ +P         +++ + +    +      +         +    + P LVG  + L
Sbjct: 242 VLSFVPFLGFGLGMVLALLVALLQYPDWVGVAWVAGVYLAGQALESYVVTPRLVGERVGL 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +   F L    +  G +G+ +   L A + V  +E     + +
Sbjct: 302 HPVAVIFALAAFGQLFGFVGVLLAVPLAATLLVGLRELRAVYQAS 346


>gi|320094369|ref|ZP_08026156.1| integral membrane protein [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978702|gb|EFW10258.1| integral membrane protein [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 517

 Score =  160 bits (404), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 101/315 (32%), Gaps = 9/315 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+    PV  AL I     P+      +        A +  +    +FI  L       +
Sbjct: 116 LQEVLLPVAIALAIAVFLQPLVEWLRRRLHFPPALAATVGLLLFFVVFIAALSQATNQIV 175

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++  LV++     +  +                ++ T  +++  +           +  
Sbjct: 176 EQVPLLVNQATSGVKQLVDWLEHGP--------IKVDTTAINNFVNQMRTELIEWVNSNK 227

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +   A       L    S + M+  LFFF +DG SI   +  L          + +  
Sbjct: 228 QSLATGALSITSSLLSMVTSGLTMLFCLFFFLKDGRSIWLWVVRLLPAPARVPLHESAIR 287

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAV 265
               + S       +A  + + +    +  G+P  V + VIT   A +P    ++     
Sbjct: 288 GWVTLGSYVRTQIQVAAIDAVGISLGAFFLGMPMVVPIAVITFFAAFVPIIGALASGAIA 347

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +  L+     +A  + +   +   +    L+PF++   + L  +     +       G+
Sbjct: 348 VLVALVYKGATSAIIMLVIILVVQQVESNLLQPFMMSSAVSLHPVAVMLVITAAGSVGGI 407

Query: 326 LGLFIGPVLMALIAV 340
            G   G  + A I  
Sbjct: 408 AGAVFGVPIAAFINA 422


>gi|241204758|ref|YP_002975854.1| hypothetical protein Rleg_2037 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858648|gb|ACS56315.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 405

 Score =  159 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 167/349 (47%), Positives = 221/349 (63%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   ++P+     Y   E++  V+  + AN+ G P P W+  +P       
Sbjct: 83  AATIAIIMIITFLVIPIGLAVTYTTGEVRTWVTWAIHANRVGAPTPDWIVALPWAGAYLN 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YRDG
Sbjct: 143 EVWTRYIGSPGALGEVIQAVSGANIGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDG 202

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           FS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS 
Sbjct: 203 FSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSP 262

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LV
Sbjct: 263 VTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGIGLFVWGTVELFIVDKTLRPKLV 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +
Sbjct: 323 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR 371


>gi|310815151|ref|YP_003963115.1| hypothetical protein EIO_0655 [Ketogulonicigenium vulgare Y25]
 gi|308753886|gb|ADO41815.1| putative membrane protein [Ketogulonicigenium vulgare Y25]
          Length = 390

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 136/357 (38%), Positives = 214/357 (59%), Gaps = 2/357 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ ++  Q  +RW+++ ++  S+YF  GF  PVL+A++I F SWPI    +      +T+
Sbjct: 32  RKPVITDQAAVRWLLLVLLAASVYFFYGFIVPVLAAMVIAFASWPIRQRLVPHMG--TTW 89

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++  ++++   ++P+L    Y + E++     ++  N  G P P W+ ++P      +
Sbjct: 90  AAIVMVLALVVCIVLPILMGVLYAIHEVRGWSMWLMEVNTTGAPTPEWMQELPFFGAQID 149

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +  + I  I R     G       L+++F+++ALF FY DG
Sbjct: 150 ERWAEFLGRPGGVSALIQLVTGSNIMNIYRGVLSAGYYSFHLFLNLVFVLVALFVFYHDG 209

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I  Q+  +G  L P  W ++S + P  + ST  GMT+IAIGEG++LG AYW+AGVP+ 
Sbjct: 210 DKIVAQIGRVGRRLLPERWDRLSSVAPMTVSSTVTGMTLIAIGEGIILGLAYWVAGVPAP 269

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              G+IT  +A+IPGGAP++FT +S+YL+  G+      LF+WG +ELFIVDKT+RP+LV
Sbjct: 270 ATFGLITGFLALIPGGAPLAFTTISLYLVASGSPIAGVGLFVWGTVELFIVDKTIRPWLV 329

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GGP++LPFL TFFGL+GG++TMG++GLF+GPVLMAL+  IW+E    I+   E+   
Sbjct: 330 GGPVRLPFLLTFFGLIGGIKTMGIVGLFVGPVLMALLMTIWREWQREIRAPYERAED 386


>gi|163858826|ref|YP_001633124.1| hypothetical protein Bpet4506 [Bordetella petrii DSM 12804]
 gi|163262554|emb|CAP44857.1| conserved hypothetical protein [Bordetella petrii]
          Length = 389

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 156/359 (43%), Positives = 221/359 (61%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +L    I RW+++ ++L   YFL GF  P L+ALIIG  +WP++   + K    +T
Sbjct: 21  MHQPVLPAYLIARWLLLLVLLAGAYFLSGFLVPALAALIIGLATWPLFQRIVQKCGGRAT 80

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +A + V+ + IVPL     Y + E     +  + AN+HG+ VP W+S +P      
Sbjct: 81  LAATLALIGVILVIIVPLALALSYAVQEASNFFAWALAANRHGMAVPDWISSLPAVGPRL 140

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            ++ +               +    +  I R             L+++FM+I LFF Y+D
Sbjct: 141 AVYWQTYLGEPHALGALVELVSGEHLGNIYRMVLSATGNAFQLLLNVVFMLITLFFVYKD 200

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +  QLD LGE + P  W++ SR+VP  + ST  GM++IA+GEG+VLG AYWLAGVPS
Sbjct: 201 GDRMIAQLDVLGERILPTRWQRFSRVVPATVGSTVTGMSLIAVGEGVVLGVAYWLAGVPS 260

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L  WG IELFIVDKTLRP L
Sbjct: 261 PVLLGVVTGFMALIPGGAPLSFTLVSLYLIGSGHLVAGLALLAWGTIELFIVDKTLRPRL 320

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           VGGP+KLPFLPTFFGL+GGV+TMG++GLF+GPVLMAL+  +W+E +  ++  ++    N
Sbjct: 321 VGGPVKLPFLPTFFGLIGGVKTMGIVGLFVGPVLMALLVAVWREWVRNVERERDTARLN 379


>gi|116252266|ref|YP_768104.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256914|emb|CAK08008.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 405

 Score =  159 bits (403), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 167/349 (47%), Positives = 222/349 (63%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   ++P+     Y   E++  V+  + AN+ G P P W+  +P      +
Sbjct: 83  AATIAIILIITFLVIPIGLAVTYTTGEVRTWVAWAIHANRAGAPTPDWIVALPWAGAYLD 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YRDG
Sbjct: 143 EVWTKYIGSPGALGEVIQAVSGANIGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDG 202

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           FS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS 
Sbjct: 203 FSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSP 262

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LV
Sbjct: 263 VTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGISLFVWGTVELFIVDKTLRPKLV 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +
Sbjct: 323 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR 371


>gi|300812733|ref|ZP_07093140.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496273|gb|EFK31388.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 393

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 114/335 (34%), Gaps = 4/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 48  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 107

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       L   P      +   K ++        + +    + 
Sbjct: 108 QSQIDSLVKNWPTIWKNSTNAVDELLHSPKFSGLRDSLQKQMTS----LQKNFSKSMGST 163

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +       +    +      ++      LFF  +DG  +   L       +     K+  
Sbjct: 164 VSSALGNLTSAVTVATAVFTTLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V + + S  +G   +AI  G++    Y + G P   AL +    + +IP          
Sbjct: 224 EVNQAVSSYVIGQVSVAICVGIMFFIGYTIIGEPYGAALAICAGFLNLIPYFGTFIGLIP 283

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  N+     + +   IE  I  + + P +VG  +K+  + T   ++G     GL
Sbjct: 284 ALIIALVTNLPMVAKVLVVFFIEQIIETRVISPLVVGNRLKMHPVTTIIVMLGAGSVWGL 343

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            G+  G  + A++ ++        ++       +F
Sbjct: 344 WGVIGGIPIYAVMKILLTHVYRYYRKVSHLYDDSF 378


>gi|237815164|ref|ZP_04594162.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260883502|ref|ZP_05895116.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297248081|ref|ZP_06931799.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
 gi|237790001|gb|EEP64211.1| ATP/GTP-binding protein [Brucella abortus str. 2308 A]
 gi|260873030|gb|EEX80099.1| permease [Brucella abortus bv. 9 str. C68]
 gi|297175250|gb|EFH34597.1| ATP/GTP-binding protein [Brucella abortus bv. 5 str. B3196]
          Length = 658

 Score =  159 bits (402), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 44  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 102

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 103 LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 162

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 163 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 217

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 218 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 277

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 278 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 338 VGLHPVWLMFALFAFGSLFGFTGML 362


>gi|262370626|ref|ZP_06063951.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262314426|gb|EEY95468.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 373

 Score =  158 bits (401), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 170/347 (48%), Gaps = 5/347 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++  +I  +  +S   LK F  PVL A II + +WP+Y S         T  A I  
Sbjct: 9   QKVLLFGLIFILFYLSFQVLKYFIVPVLWAAIIAYITWPLYHSVQKLCGPRPTLSATIMI 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKH 126
             V+ +  +PL F  +    E + L  ++      G + VP+++ D+P          K 
Sbjct: 69  SMVVLVVGIPLTFAIFMLQHEGRNLFYELQRQVFSGHLDVPQFIRDLPIIGKEVTRTLKE 128

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++   +  + +     +        +              + F +++LFFFYRDG +I  
Sbjct: 129 INTDPNSIVQN----VSGWFQSHLNYGRLVLSEISKNIFKLCFAVMSLFFFYRDGQTILN 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q+    E +           + +  R+   G+ + AI + L+ G +Y++AGVP+ + L +
Sbjct: 185 QVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQALLAGLSYFVAGVPNPMVLTI 244

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T I A+IP G P++++AVS++L  +G    A  + +WG   +   D  +RP ++ G  +
Sbjct: 245 VTFIFALIPFGPPVAYSAVSLWLFSQGQTIEAIGVMVWGVCVVSTADNVIRPLVISGATQ 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +PFL   FG++GG+ + G++GLF+GPV++A++  IW+E +     + 
Sbjct: 305 IPFLLIMFGVLGGLASFGMVGLFVGPVILAVLLAIWREWLHEQVHDP 351


>gi|150395339|ref|YP_001325806.1| hypothetical protein Smed_0111 [Sinorhizobium medicae WSM419]
 gi|150026854|gb|ABR58971.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 391

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 166/357 (46%), Positives = 217/357 (60%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ ++L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVVPISAARWLLVLVLLAGVYFFHGFLVPVLAAVVIGFASWPIYWRMLQALNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + V+   +VP+     Y + E++  +   V  N +G P P WL+ IP       
Sbjct: 85  AATIALICVVAFIVVPISLAAIYAVDEVRSGLVWAVETNANGAPAPAWLATIPAVGAWLG 144

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +  + I  I R     G       L+++FM+I LFF YRDG
Sbjct: 145 EQWVKNVGHPGALGELVQLVSGSNIGNIYRGVLVVGASAFQSFLTLLFMLITLFFVYRDG 204

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS 
Sbjct: 205 HSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPSP 264

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LG+IT +MA++PGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP LV
Sbjct: 265 VTLGIITGLMALVPGGAPLCFTLVSVYLVASGSPIHGIALFTWGTTELFIVDKTLRPRLV 324

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GGPIKLPFLPTFFGLVGGV+TMG LGLF+GPVLMAL+  IW+E +  +    E    
Sbjct: 325 GGPIKLPFLPTFFGLVGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPEPADD 381


>gi|307306991|ref|ZP_07586730.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307318057|ref|ZP_07597494.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306896459|gb|EFN27208.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306901931|gb|EFN32530.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 391

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 168/355 (47%), Positives = 219/355 (61%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ I+L  +YF  GF  PVL+A++IGF SWPIY   +     + T 
Sbjct: 25  RSALVVPISAARWLLVLILLCGVYFFHGFLVPVLAAVVIGFASWPIYWRLLQGLNGNRTL 84

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA +SV+   +VP+     Y + E+++ +   V  N +G P P WL+ IP       
Sbjct: 85  AATIAIISVVAFIVVPISLAAIYAVEEVRDWLVWAVATNANGAPAPAWLATIPAVGAWLG 144

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +  + I  I R     G       L+++FM+I LFF YRDG
Sbjct: 145 EQWVKYVGHPGALGELVQLVSGSNIGNIYRGVLVVGASAFQSFLTLLFMLITLFFVYRDG 204

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S S+QLD LGE +FP  W+++SR+VP  I ST  GM IIAIGEG+VLG AYWLAGVPS 
Sbjct: 205 QSFSKQLDHLGERIFPMRWERLSRVVPLTISSTVTGMGIIAIGEGIVLGVAYWLAGVPSP 264

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LG++T IMA+IPGGAP+ FT VS+YL+  G+  +   LF WG  ELFIVDKTLRP LV
Sbjct: 265 VTLGILTGIMALIPGGAPLCFTLVSVYLVASGSPVHGIALFTWGTTELFIVDKTLRPRLV 324

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           GGPIKLPFLPTFFGL+GGV+TMG LGLF+GPVLMAL+  IW+E +  +    E  
Sbjct: 325 GGPIKLPFLPTFFGLIGGVKTMGFLGLFVGPVLMALLVAIWREWLREVTSQPEPP 379


>gi|190891868|ref|YP_001978410.1| putative permease protein [Rhizobium etli CIAT 652]
 gi|190697147|gb|ACE91232.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 398

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 168/352 (47%), Positives = 224/352 (63%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 21  RTPLIPSISAARWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 80

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   ++P+ F   Y   E++  ++  + AN+ G   P W++ +P      +
Sbjct: 81  AATIAIIMIVTFLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLD 140

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YRDG
Sbjct: 141 ELWTKYIGSPGALGELIQAVSGAHIGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDG 200

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           FS S+QLD LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS 
Sbjct: 201 FSFSKQLDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSP 260

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LV
Sbjct: 261 VTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGVGLFVWGTVELFIVDKTLRPKLV 320

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +  +
Sbjct: 321 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAE 372


>gi|158424265|ref|YP_001525557.1| hypothetical protein AZC_2641 [Azorhizobium caulinodans ORS 571]
 gi|158331154|dbj|BAF88639.1| putative membrane protein [Azorhizobium caulinodans ORS 571]
          Length = 388

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 144/345 (41%), Gaps = 3/345 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              QG    +I+ + +   + L  F+  +L A+I+     P+           +   A +
Sbjct: 42  NVQQGSFLALIVLVSVAFAWLLLPFYGALLWAVILAILFNPLNRWLTRLLGGRANLAAAL 101

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + ++ +C+ ++P   +      E  EL  +V     +   +     D+        L   
Sbjct: 102 SVLACICIVVIPGSMILASLAREASELYQQVSSRQFNPTEITARAHDLLPDFVKDLLPPF 161

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                + ++    +FL       I   A   G       +S+  M+  LFF +RDG S++
Sbjct: 162 TGDTFKEIESRLASFLGQ-ASQVIASSAVSVGQGTAQLFVSLGVMVYVLFFLFRDGASLA 220

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L P + + +      V+++T  G  IIA+ +GL+ G A+W  G+ + +  G
Sbjct: 221 LAIRRTSP-LSPHHTESLFAKFSDVLKATVKGNVIIALVQGLIGGLAFWGLGIGAPLLWG 279

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V  A+++++P  GA + +   + YL++ G       L   G   + ++D  LRP LVG  
Sbjct: 280 VSMAVLSLVPAVGAALVWGPTAAYLMLSGQYLKGAILLGIGIFVISMIDNLLRPPLVGKG 339

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +LP        +GG+   G+ G  IGP++ A+   IW       
Sbjct: 340 TRLPDYMVLVSTLGGISLFGVNGFVIGPLIAAMFVAIWSLFKDDR 384


>gi|160898931|ref|YP_001564513.1| hypothetical protein Daci_3492 [Delftia acidovorans SPH-1]
 gi|160364515|gb|ABX36128.1| protein of unknown function UPF0118 [Delftia acidovorans SPH-1]
          Length = 387

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/348 (20%), Positives = 138/348 (39%), Gaps = 3/348 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +++   +     L  F   +   + +     P++   +++    +   A+   +
Sbjct: 8   KRTFMLLLIAATIGFGAVLWEFMGAIFWGVALAILFSPLHRRLLARMPRRTNLAALSTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + I+PL  +    + E   +  +V   N       + + D     W +    +   
Sbjct: 68  LCLVVAILPLALIGASLVREASLIYERVNSGNLDAGTYLQQIMDALPS-WVTPWLERLHL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +           A   G     + +    M+  LFF  RDG  ++Q++
Sbjct: 127 GSLAELQDKLSSIAMQASKLAATKALGIGQNTFGFLVGFCVMLYLLFFLLRDGRDLTQRI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +  ++S     VIR+T  G   +A  +G + G  +W+ G+   V  GV+ 
Sbjct: 187 RMAIP-LQADHKAELSSKFTTVIRATVKGNLAVAAAQGALGGLIFWILGIQGPVLWGVVM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +  V+IY L  G +     L  +G + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAVGAGLIWAPVAIYFLATGAMGKGLILIAYGVLVIGLVDNVLRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P        +GG+   GL G  IGPV+ AL   IW        +++EK
Sbjct: 306 PDYIVLISTLGGMALFGLTGFVIGPVIAALFMAIWDMFSRMQVQDEEK 353


>gi|239831560|ref|ZP_04679889.1| Hypothetical protein OINT_1000763 [Ochrobactrum intermedium LMG
           3301]
 gi|239823827|gb|EEQ95395.1| Hypothetical protein OINT_1000763 [Ochrobactrum intermedium LMG
           3301]
          Length = 644

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 106/359 (29%), Gaps = 14/359 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R     P  +     M + +  LYF K  F P+  A+++ F   PI +    +      F
Sbjct: 12  RPITSAPPRLPTLAAMAVTVAILYFAKDVFLPLAIAVLLTFALAPIVAFL-RRAGLPRLF 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI-------- 113
             + +      +  V    + +      + +        +    +    SD         
Sbjct: 71  AVITSVAGGFLIVAVFSAVVAFQVSEVAQNVTYYQYNIIEKIRTLKEAGSDNSFFDRLNS 130

Query: 114 ---PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                G   +    K  + P          ++                  +    +   +
Sbjct: 131 FAERIGTEINRPEQKTQALPSDEPEEKPLLVQIFAPRHPVETLRSIIEPLIGPLATTGLV 190

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++ + F   +   +  +   L  +       +  +   K +    L   ++ I  G+ L 
Sbjct: 191 VVVVIFMLLEREELRDRFIRLVGYGDLHRTTEALQDAGKRVGQYLLTQLVVNITYGVPLA 250

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIE 288
              W+ G+P+    G++  ++  +P   P+    + ++L                   + 
Sbjct: 251 FGLWILGIPNAALWGMLAIVLRFVPYIGPVIAAILPLFLAFAVAPGWNLLLWTIGLFVVI 310

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +++  + P+L G    L  L      +      G +GL +   L   + V+ +    
Sbjct: 311 ELLINNVIEPWLYGSRTGLSPLAIIVSAIFWAWLWGPVGLVLSTPLTVCLVVLGRHVPK 369


>gi|300114287|ref|YP_003760862.1| hypothetical protein Nwat_1663 [Nitrosococcus watsonii C-113]
 gi|299540224|gb|ADJ28541.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 547

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 106/327 (32%), Gaps = 10/327 (3%)

Query: 5   MLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+I F+  +  +Y L+    P ++ +++ +   P+      K   S T   
Sbjct: 1   MNARRQLRFWLIGFLFFLISVYLLREILLPFVAGMVVAYLIDPLCDWLERK-GCSRTAAT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T   + +  + LL L      E+  L+  +                    +   +  
Sbjct: 60  SLVTAGFILVVSMVLLLLVPLLRSEIVHLIETLPSLIARAQD------STWPWLQLLQER 113

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                         +  +    +          G+   +    +  M +  F+  RD   
Sbjct: 114 WSIDMSQIQDAAREQAGMLVKWVGKTVGTILSSGLALANLLSLVFIMPVVTFYLLRDWDK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  Q+DSL         ++  +++  V+     G   + +  G        L G+   + 
Sbjct: 174 LIAQIDSLLPRKHAPVIREQVKLIDTVLSGFIRGQFSVCLLLGAFYAVGLALIGLDFGLM 233

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G++  +++ IP    I    V + L             +     I   I    L P LV
Sbjct: 234 VGMLAGLLSFIPYVGTIVGFIVGLGLAFVQFSEWTPIFLVAGVFIIGQVIEGNVLTPRLV 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           G  + L  +   F L+ G    G LG+
Sbjct: 294 GTRVGLHPVMVIFALLAGGALFGFLGI 320


>gi|290956980|ref|YP_003488162.1| hypothetical protein SCAB_24961 [Streptomyces scabiei 87.22]
 gi|260646506|emb|CBG69603.1| putative membrane protein [Streptomyces scabiei 87.22]
          Length = 427

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 103/357 (28%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +  +      + + L G    +L A  +     P  S   SK     
Sbjct: 2   PRWLPRAMVLALSLIAVFQFGSWAFHQLIGLLVNILIAFFLALAIEPAVSWMASK-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F + +  +  +      +  L      ++ ++V          I               
Sbjct: 61  GFASFLVFLITLIGAAGFVTLLGSMLAGQIIKMVEDFPAYLDSVISWINT---------- 110

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +   L      + L  +      +              L     ++ + +  F+F  
Sbjct: 111 --SFHTELRRVDIQEGLLRSDWLQKYVQNSATGVLDVSAQVLGGLFQLLTIALFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G           VP
Sbjct: 169 DGPRLRRALCSVLPPSKQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLEYLDVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    N + A  + ++  I     +  L+P
Sbjct: 229 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTAKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|88799319|ref|ZP_01114897.1| permease, putative [Reinekea sp. MED297]
 gi|88777858|gb|EAR09055.1| permease, putative [Reinekea sp. MED297]
          Length = 391

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 134/348 (38%), Gaps = 9/348 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + Q  +    + ++   +  L    +P L+AL++ +   P+        + S T   V
Sbjct: 3   ITDSQKWLVLASLVLLFWLITLLSPILSPFLTALLLAYLGDPLVDKLEEW-KLSRTQGVV 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +  +F +  L +    + ++ +L+  V               +    +   E   
Sbjct: 62  VTFLVLALIFALAALLVIPALIQQIDDLIKLVPQGVAWIKNEATPYLEQRFDIDLYEF-- 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   L    +     N +  +    ++ G+  + +  +++ + +  F+  RD   +
Sbjct: 120 ----DWAWLSAKLDWGATGNVVRSVLANLTQSGLAMVSFIGNLVLIPVVTFYLLRDWDLL 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++ +L    + A    +++   + + + F G  ++ + +G++        G+   + +
Sbjct: 176 VERVGALIPRYYIANVSSLAQQCHETLGAFFRGQLLVMLAQGIIYSIGLMAIGLDLGLLV 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G++  + +++P    I      ++      G++ +   + +   +   +    L P LVG
Sbjct: 236 GMLAGLASIVPYLGAIIGIGAGLFAAWFQFGDLLHLVLVLVVFGVGQTLEGTVLTPKLVG 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             I L  +   F ++ G +  G +G+ +     A+I V+ ++     +
Sbjct: 296 DRIGLHPVAVIFAVLAGGQLFGFVGILLALPAAAVIMVLLRQVHSNYR 343


>gi|119896356|ref|YP_931569.1| permease [Azoarcus sp. BH72]
 gi|119668769|emb|CAL92682.1| probable permease [Azoarcus sp. BH72]
          Length = 367

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 160/342 (46%), Positives = 216/342 (63%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RW++  ++L  +YFL GF  PVL+ALIIGF SWP+Y   + +    S   A +A ++V
Sbjct: 10  VARWLLFLLLLAGVYFLSGFIVPVLAALIIGFASWPLYERLLRRCGGRSAVAASLALMTV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +VPL     Y M E   L+  ++ AN++G+  PRW+  +P          +     
Sbjct: 70  ILVLVVPLSLAGSYAMREADTLIEWLLAANRNGMAPPRWVEALPLVGGRLAALWQEYLGA 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     L    +  I R         L   L+++FM+I LFF Y+DG  I+ QLD 
Sbjct: 130 PQALGEWVQILSGQHLGNIYRILLAATGDLLHAVLTLLFMLITLFFIYKDGDRIAAQLDR 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +GE + PA W++ SR+VP  + +T  GM +IAIGEG+VLG AYW+AGVPS V LGV TA 
Sbjct: 190 VGEQVLPARWQRFSRVVPATVSATVTGMGLIAIGEGVVLGLAYWIAGVPSPVLLGVATAF 249

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           MA+IPGGAP++FT VS+YL+  G+      LF WG  ELFIVDKTLRP LVGGP+KLPFL
Sbjct: 250 MALIPGGAPLAFTLVSLYLVGSGDPMAGLALFTWGTCELFIVDKTLRPRLVGGPVKLPFL 309

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           PTFFGLVGGV+TMGL+GLF+GPVLMAL+  IW+E +   +E 
Sbjct: 310 PTFFGLVGGVKTMGLVGLFVGPVLMALLVAIWREWLHHTEEE 351


>gi|295426406|ref|ZP_06819056.1| membrane protein [Lactobacillus amylolyticus DSM 11664]
 gi|295063774|gb|EFG54732.1| membrane protein [Lactobacillus amylolyticus DSM 11664]
          Length = 404

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 118/344 (34%), Gaps = 4/344 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      PVL A I  +   P+      K         ++  + V+   I
Sbjct: 42  ISFVLNPAWMFFSAILPPVLLATIQFYVMNPVVDWLEKKWRVPRVLTIIVLFLIVVVALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +      ++  LV          +   +     P          K + + Q    
Sbjct: 102 WIINTIIPIVQEQINSLVKNWPKIWDDAVNATQNALRDPRLNSVRSNIDKIIDNTQKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        +  I    S   M      ++++     LFF  +DG ++   +       
Sbjct: 162 KSGQTTVNVALTNISSAVSIITM----IIMTLMTAPFLLFFMLKDGHNLRPYITKFAPQR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + K+   +   I S   G   +A   G++    Y + G+P    L ++   + +IP
Sbjct: 218 WQKSFGKLLWDINNAISSYIRGQITVAFWVGVMFAIGYTVVGLPYGYTLAILAGFLNLIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ + I  ++     + +  AIE  I  + + P ++G  +++  + T   
Sbjct: 278 YFGTFIAFIPALVIGIMTSVPMLIKVLIVFAIEQAIEGRVISPLVMGNKLEMHPITTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+G     GL G+  G  + A++ +I        ++  +    +
Sbjct: 338 LIGASAVWGLWGVVFGIPIYAVLKIIVSRVYNYYRKVSDVFDDD 381


>gi|188579575|ref|YP_001923020.1| hypothetical protein Mpop_0304 [Methylobacterium populi BJ001]
 gi|179343073|gb|ACB78485.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 650

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 106/351 (30%), Gaps = 16/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LY+ +  F P++ A+++ F   P+ S    +         +IA +
Sbjct: 22  RGLLTLAVGVVVIAALYYGREVFIPLVLAILLSFVLAPVVSFL-RRMYLGRVPSVIIAVL 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +     L         +L        Q    +   L      +        H +
Sbjct: 81  LALSIILGIGAVLGTQVASLATDLPRYQTTVQQKLSGLQEGLLGRANALLQRINHQVHDA 140

Query: 129 HPQSLKILSETFLKTNGID-------------FIPRFASRFGMIFLDYCLSIIFMIIALF 175
             ++    +       G                    A       ++   ++  +++ + 
Sbjct: 141 SQKASAAGTTAERSVGGETPKAQLVRVQEPDPSPLTLAHNILGPIVEPLTTVGIVLVVVV 200

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F       +  +L  L                   + + FL    +    G+++G   W 
Sbjct: 201 FLLMQREDLRNRLIRLFGSRDLHRTTVAMDDAASRLGTYFLAQLGMNAAFGVLIGLGLWA 260

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            GVPS +  GV +A+M  +P           V++   +      A        I   +  
Sbjct: 261 IGVPSPILWGVFSALMRFVPYIGAFISGLLPVALAAAVDPGWSMAIWTAALFLIAEPLFG 320

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + P L G    L         +      G +GL +       + V+ + 
Sbjct: 321 HVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPVGLILATPFTVCLVVLGRH 371


>gi|237785192|ref|YP_002905897.1| putative permease family transporter [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758104|gb|ACR17354.1| transporter of the putative permease family [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 448

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 108/339 (31%), Gaps = 18/339 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +++    +  +   G       P+L ALII    W   +    K        A+++ 
Sbjct: 80  IRLILLIAGGIVAWRAIGLLWRGVLPILIALIICTLLWVPTNWM-RKAHFPRWLAALVSV 138

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + +     +    + +  +L  + +   +      +           ++   + +
Sbjct: 139 LGALAIIVGLFSLIAPSAVEQSSQLADQSIKGLEKVQNYVQGPPLNLNDQQVNDYLDEGI 198

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +  D I            +  + +  +++  FFF +DG      
Sbjct: 199 DK------------IKSSSDQIIAGVVTGVNKASELAVMLGVILMITFFFLKDGDRFLPW 246

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +       +  ++ +     +        ++++ +   +G    +  VP  + L VI
Sbjct: 247 LGKISGKRGEGHIVELLQRSWNTLGGFIRAQAVVSLIDAFFIGLGLIILNVPLALPLAVI 306

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   IP    I       +  L+   +  A  +         +    L P L    + 
Sbjct: 307 TFMGGFIPIVGAIVAGAVAVLIALVSNGLTTALIVLAIIIAVQQLEGNVLSPVLQSKAMN 366

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  +     +  G    G++G F+   +MA IAV  +  
Sbjct: 367 LHPVIVLLSVTVGSNLYGIIGAFLAVPVMATIAVWLRYF 405


>gi|313123300|ref|YP_004033559.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279863|gb|ADQ60582.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 384

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 115/335 (34%), Gaps = 4/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 36  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       L   P      +   K ++        + +    + 
Sbjct: 96  QSQIDSLVKNWPTIWKNSTNAVDELLHSPKFSGLRDSLQKQMTS----LQKNFSKSMGST 151

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +       +    +      ++      LFF  +DG  +   L       +     K+  
Sbjct: 152 VSSALGNLTSAVTVATAVFTTLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 211

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V + + S  +G   +AI  G++L   Y + G P   AL + +  + +IP          
Sbjct: 212 EVNQAVSSYVIGQVSVAICVGIMLFIGYTIIGEPYGAALAICSGFLNLIPYFGTFIGLIP 271

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  ++     + +   IE  I  + + P +VG  +K+    T   ++G     GL
Sbjct: 272 ALIIALVTDLSMVAKVLVVFFIEQIIETRVISPLVVGNRLKMHPATTIVVMLGAGSVWGL 331

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            G+  G  + A++ ++        ++       +F
Sbjct: 332 WGVIGGIPIYAVMKILLTHVYWYYRKVSHLYDDSF 366


>gi|300858162|ref|YP_003783145.1| hypothetical protein cpfrc_00744 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300685616|gb|ADK28538.1| putative membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205884|gb|ADL10226.1| Putative membrane protein [Corynebacterium pseudotuberculosis C231]
 gi|302330441|gb|ADL20635.1| putative membrane protein [Corynebacterium pseudotuberculosis 1002]
 gi|308276119|gb|ADO26018.1| putative membrane protein [Corynebacterium pseudotuberculosis I19]
          Length = 524

 Score =  156 bits (395), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 112/337 (33%), Gaps = 17/337 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           I   +I        Y +K F     PV+ ALI+    W   +    K+   S   A+++ 
Sbjct: 114 IRILIIAATGFAGWYLIKQFWRGLLPVVLALIVCTVLWAPTAWM-RKRGVPSGLAALVSI 172

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++    F   +  +      + + L  +     Q               +W         
Sbjct: 173 LASFGFFGGLIWVISPDIARQSQTLYFQAFEGVQKVQ------------LWLQGPPFNLD 220

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S     ++ +           I         I     ++I  +++  FFF +DG      
Sbjct: 221 SDELGNRVNTAVQWFQRQSGTIAGEIFSGIGIATSVLVTIGVVLVLTFFFLKDGEGFLPW 280

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S+       +  ++       +        ++++ + + +G+   L GVP  +AL V+
Sbjct: 281 LRSIVGKRAGWHLTELLTRSWITLGGFVRAQALVSLVDAIFIGAGLILLGVPMALALAVL 340

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T I   IP     ++     +  L+   +  A            +    L P L    + 
Sbjct: 341 TFIAGFIPIIGAFVAGALAVLVALVSLGLTKAIITLGIVIAVQQLEGNVLSPLLQSRAMN 400

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  +     +  G    G++G F+     A+IAV+++
Sbjct: 401 LHPVIVLVSVTVGGGIFGIMGAFLAVPAAAMIAVLFR 437


>gi|159184894|ref|NP_354723.2| permease [Agrobacterium tumefaciens str. C58]
 gi|159140174|gb|AAK87508.2| permease [Agrobacterium tumefaciens str. C58]
          Length = 412

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 162/349 (46%), Positives = 224/349 (64%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++ P    RW+++ ++L  +YF  GF  PVL+AL+IGF SWP+Y+  + +   ++T 
Sbjct: 23  RIALIPPISAARWLLLLVVLAGIYFFNGFLVPVLAALVIGFASWPVYTRLLRQVGGNTTL 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   +VP+     Y   E++E     V  N+ G PVP W++ +PG      
Sbjct: 83  GATIAIILIIAFLVVPIFIAASYTATEIREWFGWAVHVNKAGAPVPDWIAALPGIGPWLG 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YR+G
Sbjct: 143 EQWVKYIGTPGAIGEVIQLVSGANIGNIYRAILAAGNGAFHLVLTLLFMLIALFFVYRNG 202

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              ++Q+D +GE + P  W++ISR+VP  I ST  GMT+IAIGEG++LG AYW+AGVPS 
Sbjct: 203 AGFTRQIDLVGERILPTRWERISRVVPATISSTVTGMTLIAIGEGIILGIAYWIAGVPSP 262

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VSIYL+  G+  +   LF+WG++ELFIVDKT+RP LV
Sbjct: 263 VTLGVLTGVMALIPGGAPLSFTLVSIYLVASGSPAHGLALFVWGSVELFIVDKTIRPKLV 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMAL+  IW+E +  ++
Sbjct: 323 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALLVAIWREWVREVE 371


>gi|209549432|ref|YP_002281349.1| hypothetical protein Rleg2_1838 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535188|gb|ACI55123.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 398

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 167/353 (47%), Positives = 224/353 (63%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ ++   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLVVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   ++P+     Y   E++  V+  + AN+ G P P W+  +P      +
Sbjct: 83  AATIAIIMIITFLVIPIGLAITYTTGEVRTWVAWAIHANRAGAPTPAWIVALPWAGAYLD 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YRDG
Sbjct: 143 EVWTKYIGSPGALGEVIQAVSGANIGNIYRAVLAAGGGAFHLLLTLLFMLIALFFVYRDG 202

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           FS S+Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AGVPS 
Sbjct: 203 FSFSKQIDMLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGLAYWIAGVPSP 262

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+T +MA+IPGGAP+SFT VSIYLL  G+      LF+WG +ELFIVDKTLRP LV
Sbjct: 263 VTLGVLTGVMALIPGGAPLSFTLVSIYLLASGSHVAGIGLFVWGTVELFIVDKTLRPKLV 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +  ++
Sbjct: 323 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAEK 375


>gi|311740449|ref|ZP_07714277.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304495|gb|EFQ80570.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 457

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 113/338 (33%), Gaps = 17/338 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            ++  +I+  + ++ Y LK       PVL A+++    +PI +   +K     +  AV  
Sbjct: 76  SVIFILIVAGLALAGYLLKFIWVGLLPVLLAILVSTVLYPISAWLRAK-GFPRSLAAVST 134

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++ +F      +      + + L+++          +                    
Sbjct: 135 LLGLIIVFCGVFAAMAPVVTSQSQTLINQAEDGINQITEMVEK------------SPIDI 182

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S      +             I         +     ++ + M+   FF  +DG     
Sbjct: 183 QSDQLQSVLEDVVKFAKGQASTIATGVISGFSMASSIVVAALIMLFVTFFIIKDGDKFLP 242

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L     +    +  ++   + K +         +A+ + +++G   W+  VP  + + V
Sbjct: 243 WLRKYTGNSTGWHVTELGARIWKTLSGFIQAQAAVAMVDAVLIGLGLWVLQVPLALVIAV 302

Query: 247 ITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T   + IP    ++      I  L+   + NA        I   +    L+P L    +
Sbjct: 303 VTFFASFIPIIGAVTAGALAVIIALVSNGLTNALLALALIIIVQQVEGNVLQPMLQSKAM 362

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L        +  G    G++G F+   + A IAV+ +
Sbjct: 363 GLHAAVVLLSVTVGSTLAGIVGAFLAVPVAATIAVVVR 400


>gi|302522271|ref|ZP_07274613.1| conserved hypothetical protein [Streptomyces sp. SPB78]
 gi|302431166|gb|EFL02982.1| conserved hypothetical protein [Streptomyces sp. SPB78]
          Length = 444

 Score =  156 bits (394), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 110/357 (30%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  +++         + + L G    VL A  +     P  S   ++     
Sbjct: 2   PRWLPRAMVSALLLIACFQLGTWAFHRLTGLLINVLIAFFLALAIEPAVSWMSAR-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + V+      +  L      +++ +V          I             W 
Sbjct: 61  GAATGLVFLGVLIFAAGFVTLLGSMLAGQIQNMVEDFPKYLDSVIK------------WV 108

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  +   LS  +    +  +      +              L     ++ +++  F+F  
Sbjct: 109 NGTFHTELSRLEVQDSVLHSDWLQRYVRNSASGVLDVSAQVLGGLFQLLTLLLFAFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+     +   G+P
Sbjct: 169 DGPRLRRALCSVLPPAKQAEVLRAWEIAVDKTGGYLYSRGLMALISGIAHYILFQALGIP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              ALGV   +++  IP        A+ + +    + + A  + ++  I     +  L+P
Sbjct: 229 YAPALGVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYAVWVLVFVVIYQQFENYLLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  +    +A +       +       + 
Sbjct: 289 KLTARTVDIHPAVAFGSVIAGTALLGAVGALVSIPAVATLQAFLAAYVKRYDVTDDP 345


>gi|294815484|ref|ZP_06774127.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294328083|gb|EFG09726.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 471

 Score =  155 bits (393), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 94/320 (29%), Gaps = 14/320 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A  I     P  +   ++          +    ++   +  ++ L      ++  +V   
Sbjct: 121 AFFIALAIEPAVARMAAR-GVRRGLATFLVFFGLLSAAVGFVVMLGSMLADQIVTMVEDF 179

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
                  I                + +   LS  +    +  +    + ++         
Sbjct: 180 PQYLDSVISWIN------------QTFETELSRVEVQDSVLRSDWLQSYVEDSATGVLDV 227

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               L     ++ + +  F+F  DG  + + + S+      A   +   I          
Sbjct: 228 SATVLGGLFRLLTIFLFSFYFAADGPRLRRTICSVLPPAKQAEVLRAWEIAVDKTGGYIY 287

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNI 275
              ++A+  G        + GVP   AL V   +++  IP        A+ + +    N 
Sbjct: 288 SRGLMALISGGAHYVLLEVLGVPYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNP 347

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  +  +  +     +  L+P L    + +     F  ++ G   MG +G  I    +
Sbjct: 348 WYAVWVLGFVVVYQQFENYVLQPKLTARTVDIHPAVAFGSVIAGTALMGAVGALIAIPAV 407

Query: 336 ALIAVIWKESIMAIKENKEK 355
           A +       +       + 
Sbjct: 408 ATLQAFLGAYVRRYDVTDDP 427


>gi|82699601|ref|YP_414175.1| ATP/GTP-binding protein [Brucella melitensis biovar Abortus 2308]
 gi|189023923|ref|YP_001934691.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260545574|ref|ZP_05821315.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260754474|ref|ZP_05866822.1| permease [Brucella abortus bv. 6 str. 870]
 gi|260761520|ref|ZP_05873863.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|82615702|emb|CAJ10689.1| ATP/GTP-binding site motif A (P-loop):Protein of unknown function
           UPF0118 [Brucella melitensis biovar Abortus 2308]
 gi|189019495|gb|ACD72217.1| ATP/GTP-binding protein [Brucella abortus S19]
 gi|260096981|gb|EEW80856.1| ATP/GTP-binding protein [Brucella abortus NCTC 8038]
 gi|260671952|gb|EEX58773.1| permease [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674582|gb|EEX61403.1| permease [Brucella abortus bv. 6 str. 870]
          Length = 627

 Score =  155 bits (393), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 13  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 72  LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 132 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 187 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 247 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 307 VGLHPVWLMFALFAFGSLFGFTGML 331


>gi|163814598|ref|ZP_02205987.1| hypothetical protein COPEUT_00749 [Coprococcus eutactus ATCC 27759]
 gi|158450233|gb|EDP27228.1| hypothetical protein COPEUT_00749 [Coprococcus eutactus ATCC 27759]
          Length = 471

 Score =  155 bits (392), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 48/374 (12%), Positives = 114/374 (30%), Gaps = 21/374 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-----------SLYFLKGFFAPVLSALIIGFTSWPIYS 49
           M     +   I+  +   ++                +L     P +    I F       
Sbjct: 1   MNWNKKDTIRILLILCGVVLFAYVLFNFDKVSSLFSWLVNILMPFVIGFAIAFVVNVPMK 60

Query: 50  SFI---------SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
                                  +++ + ++ +F   +  +       +     K+  A 
Sbjct: 61  GLEKVLFKNENSRLYRFKRPACLILSFLCIIAVFTFAITMIIPEMSKTITAFADKLPDAM 120

Query: 101 QHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                   + + D P  +   +    +     S  +       ++ +      AS     
Sbjct: 121 DDIQRKAIKLMKDQPEIVDKIKSIDINWDSVISNVVGIVKNGGSSVLSSTFSIASSVVGG 180

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           F+D  + I F    L         +   L ++ +      + +   +  +       G  
Sbjct: 181 FVDVLVGIFFACYILAQKETLEKQVKGILYAVFKEDKADRFIQTCVLADRTFSKFISGQC 240

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           + A   GL+      +  +P  + + +I A+ A+IP             +++  N   A 
Sbjct: 241 LEACILGLMFFITMTIFRIPYALTVSIIIAVFALIPVIGAFVGCFAGAIMILVENPKQAI 300

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              +   +   I    + P +VGG + LP +     ++ G   MG+LG+ I   L +++ 
Sbjct: 301 IFLIIFIVLQQIEGNFIYPHVVGGSVGLPSIWVLVAVMLGGDLMGILGMLIFVPLFSVLY 360

Query: 340 VIWKESIMAIKENK 353
            + +E ++     K
Sbjct: 361 AMSEEYVVKNLREK 374


>gi|262377359|ref|ZP_06070583.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
 gi|262307812|gb|EEY88951.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
          Length = 376

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/355 (25%), Positives = 172/355 (48%), Gaps = 4/355 (1%)

Query: 1   MRETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M++     Q ++ + +   +I +S + LK F  PV+ A II + +WP+Y S +       
Sbjct: 1   MQQYAPTLQKVLLFGLFFILIFLSFHILKYFIIPVVWAAIIAYMTWPLYQSVLRLCGNRP 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T  A +  ++V+ +F +P +F  +    E + L  ++      G      + D   G+  
Sbjct: 61  TLSATVMILAVILVFGLPFIFAIFMLQHEGRNLYFELQRQVFSGH---LNVPDFIRGLPI 117

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                    +  +    S     +  I     +              + F +++LFFFYR
Sbjct: 118 VGKEITRTLNEINTDPQSIALSVSTWIQGHLNYGKVVLNEVSKNIFKLCFAVLSLFFFYR 177

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG +I  Q+    E +           +    R+   G+ + AI + L+ G +Y++AGVP
Sbjct: 178 DGQTILNQVRKAFEMVVGPRVHHYFSTISATTRAVVYGVGLTAIAQSLLAGLSYFVAGVP 237

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + + L ++T I A+IP G P++++AV+++L  +G    A  + +WG   +   D  +RP 
Sbjct: 238 NPMVLTIVTFIFALIPFGPPLAYSAVALWLFSQGQTIEAIGVMVWGVCIVSTADNVIRPL 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++ G  ++PFL   FG++GG+ + GL+G+FIGPV++A++  IW+E +     N+ 
Sbjct: 298 VISGATQIPFLLIMFGVLGGIASFGLVGVFIGPVILAVLLAIWREWLHESNLNEP 352


>gi|302550444|ref|ZP_07302786.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
 gi|302468062|gb|EFL31155.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
          Length = 441

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 115/363 (31%), Gaps = 18/363 (4%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +         + + L G    +L AL +     P     +++   
Sbjct: 66  RMPRWLPRAMVLALALVAAFQLGSWAFHRLTGLLVGILIALFLALGIEPPVGRLVAR-GM 124

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A++  ++++       L    +   ++ ++V          I             
Sbjct: 125 RRGLAALLVCLAMVLGATGFFLLFGSFLAGQISDIVEDFPGYFDSFI------------G 172

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           W +  +   LS       L  +      +         F    L   + ++ + +  F+F
Sbjct: 173 WINRTFHTELSRADIQGRLLRSDWLRRYVQKSAGGVFDFSASVLGGLVRLLTIFLFSFYF 232

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L SL      +   +   I             ++A+   +       L G
Sbjct: 233 AADGPRLRRALCSLLPPAKQSEVLRAWEIAVDKTSGYLYSRGLMALISAVAHFIMLALLG 292

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP  +AL V   +++  IP        AV I      + + A  + ++  I   + +  +
Sbjct: 293 VPYALALAVWVGVVSQFIPVIGTYLAAAVPIVAAFAVDPWYAVVVLIFVVIYQQVENYLI 352

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +P L    + +     F  ++ G   +G+ G  I   ++A +   +   +       +  
Sbjct: 353 QPKLTSKTVDIHPAVAFGSVIAGTALLGVAGTLIAIPVVATLQTFFSAYVKRYDVADDLE 412

Query: 357 SSN 359
              
Sbjct: 413 EQE 415


>gi|255325572|ref|ZP_05366672.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255297360|gb|EET76677.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 457

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 112/338 (33%), Gaps = 17/338 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            ++  +I+  + ++ Y LK       PVL A+++    +PI +   SK     +  AV  
Sbjct: 76  SVVFILIVAGLALAGYLLKFIWVGLLPVLLAILVSTVLYPISAWLRSK-GFPRSLAAVST 134

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++ +F      +      + + L+ +          +                    
Sbjct: 135 LLGLIIIFCGVFAAMAPVVTSQSQTLIDQAEDGINQITEMVEK------------SPIDI 182

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S      +             I         +     ++ + M+   FF  +DG     
Sbjct: 183 QSDQLQSVLQDVVKFAKGQASTIATGVISGFSMASSIVVAALIMLFVTFFIIKDGDKFLP 242

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L     +    +  ++   + K +         +A+ + +++G   W+  VP  + + V
Sbjct: 243 WLRKYTGNSTGWHVTELGARIWKTLSGFIQAQAAVAMVDAVLIGLGLWVLQVPLALVIAV 302

Query: 247 ITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T   + IP    ++      I  L+   + NA        I   +    L+P L    +
Sbjct: 303 VTFFASFIPIIGAVTAGALAIIIALVSNGLTNALLALALIIIVQQVEGNVLQPMLQSKAM 362

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L        +  G    G++G F+   + A IAV+ +
Sbjct: 363 GLHAAIVLLSVTVGSTLAGIVGAFLAVPVAATIAVVVR 400


>gi|253690490|ref|YP_003019680.1| hypothetical protein PC1_4130 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251757068|gb|ACT15144.1| protein of unknown function UPF0118 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 406

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/355 (19%), Positives = 143/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A ++     P+ S    K  + +   +++  
Sbjct: 14  TKGFFILILFVVTLAFFDILAPYYSAILWAAVLAVIFHPLKSKIRQKLNDRNGVASLLTV 73

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  +  +PL  +    ++E+  + +++  +N     V   L       WA     +H 
Sbjct: 74  LIIFLIVFIPLGVIVSSLVVEINGVYTRLQDSNTQFPVVLAELLQHLP-KWARHFLAEHN 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++       G     + +    M+  LFF  +DG  +   
Sbjct: 133 LDNAAKIQQELSQVALKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGSYLVNL 192

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G +
Sbjct: 193 ILESLP-LSTHVKHHLLVKFAAVSRATVKGTAVVAIVQGTLGGIAFSIAGIEGSLLWGSL 251

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +++L     ++ A  +  +  + + +VD  LRP LVG   K
Sbjct: 252 MAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTK 311

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        +EN E I  +F
Sbjct: 312 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 366


>gi|148654006|ref|YP_001281099.1| hypothetical protein PsycPRwf_2209 [Psychrobacter sp. PRwf-1]
 gi|148573090|gb|ABQ95149.1| protein of unknown function UPF0118 [Psychrobacter sp. PRwf-1]
          Length = 409

 Score =  154 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/349 (24%), Positives = 170/349 (48%), Gaps = 5/349 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             ++  + +   +++ + ++    ++ F  P L A I+ + ++PIY+ F  K + S    
Sbjct: 7   RELVTQRVLTATLLVILFILCFRVVQFFIVPALWAAILAYVTFPIYNFFHKKVKLSPNIS 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASE 121
           A I TVS+  +  VP++   +    E   L S ++   + G + VP+ + ++P      +
Sbjct: 67  AGIMTVSISLMLGVPIVLGLFVLQQEAVNLYSNLLYRIKVGYVDVPQEIKNLPVIGQQIK 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++      + +      +       +      +       +   ++ +FFFYRDG
Sbjct: 127 DILWEINKDPEASLSAFRAWLQSH----LYYGKVALDVAFSTMAKLGMALMTIFFFYRDG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S+ +Q+     ++           V    ++   G+ + A+ + L+ G  Y+ AG PS 
Sbjct: 183 ISLIKQIRQALRNIIGNRIDDYLDSVGSTTQAVVYGIGLTALAQALLAGVGYYFAGAPSP 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L ++T ++A++P G P ++  VSI+LL +G+   A  L LWG + +  VD  +RP ++
Sbjct: 243 ILLTLMTFVVALVPFGTPFAWMGVSIWLLTQGHTPEAIGLALWGMLVISWVDNLIRPIVI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G  K+PF+  F G++GG+   G +GLFIGPV++A+   +W+E I   +
Sbjct: 303 SGATKIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIALAVWREWINQHR 351


>gi|302542081|ref|ZP_07294423.1| putative membrane protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302459699|gb|EFL22792.1| putative membrane protein [Streptomyces himastatinicus ATCC 53653]
          Length = 407

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 104/359 (28%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +         +   L G    VL A  +     P      ++   
Sbjct: 37  RMPRWLPRAMVLALALVACYRLATWAFDQLTGLLLNVLIAFFLALAIEPAVDRMAAR-GV 95

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  I  + ++         L      ++  +V          +             
Sbjct: 96  RRGLATGIVFIGILVAAAGFFTLLGSMLADQIMTMVEDFPKYLDQVVS------------ 143

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           W ++ +   LS  +    L  +    + +              L     ++ + +  F+F
Sbjct: 144 WMNDTFHTRLSRLEIQDSLLHSDWLQSYVKNSADNVLDVSAQVLGGLFRLLTVTLFAFYF 203

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+          +   I             ++A+  G+         G
Sbjct: 204 AADGPRLRRALCSVLPPNRQTEVLRAWEIAVAKTGGYIYSRGLMALISGVAHYILLESLG 263

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP   AL V   +++  IP        A+ + +    N + A  + ++  +     +  L
Sbjct: 264 VPYAPALAVWVGLISQFIPTIGTYLAGALPMLIAFTINPWYAIWVLVFVVVYQQFENYLL 323

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P +    + +    +F  ++ G   +G +G  I     A +       I       + 
Sbjct: 324 QPRITSRTVDIHPAVSFGSVIAGTALLGAVGALIAIPATATLQAFLGAYIKRYDVTDDP 382


>gi|227328036|ref|ZP_03832060.1| hypothetical protein PcarcW_12170 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 404

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 143/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A ++     P+ S    K  + +   +++  
Sbjct: 7   TKGFFILILFIVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGVASLLTV 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  L  +PL  +    ++E+  + +++  +N     V   L       WA     +H 
Sbjct: 67  LIIFLLVFIPLGVIVSSLVVEINGVYTRLQDSNTQFPVVLAELIQHLP-KWARHFLAEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++       G     + +    M+  LFF  +DG  +   
Sbjct: 126 LDNAAKIQQELSQVVLKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGAYLVNL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G +
Sbjct: 186 ILESLP-LSTHVKHHLLVKFAAVSRATVKGTVVVAIVQGTLGGIAFSIAGIEGSLLWGSL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +++L     ++ A  +  +  + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        +EN E I  +F
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 359


>gi|239982689|ref|ZP_04705213.1| hypothetical protein SalbJ_24884 [Streptomyces albus J1074]
          Length = 429

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 103/356 (28%), Gaps = 18/356 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +         + + L      +L A  +     P  S   ++     
Sbjct: 25  PRWLPRAMVMALALVAAFQLGTWAFHQLTSLLINILIAFFLALAVEPAVSWMAAR-GMRR 83

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                   + ++      +  L      ++ ++V          I               
Sbjct: 84  GLATAAVFLGLLVASAGFVTLLGSMLAGQIVDMVEDFPKYLDSVISWIN----------- 132

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + +   LS  +    L  +      +              L     ++ +++  F+F  
Sbjct: 133 -QTFHTDLSRLEVQDSLVHSDWLRRYVQNSATGVLDISAQLLGGLFQLLTLVLFAFYFAA 191

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G          GVP
Sbjct: 192 DGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLQWLGVP 251

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    + + A  +  +  +     +  L+P
Sbjct: 252 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYMLQP 311

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + +     F  ++ G   +G +G  I    +A +       +     + E
Sbjct: 312 KLTAKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVRRYDVHDE 367


>gi|153009887|ref|YP_001371102.1| hypothetical protein Oant_2560 [Ochrobactrum anthropi ATCC 49188]
 gi|151561775|gb|ABS15273.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 644

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 106/356 (29%), Gaps = 14/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R     P  +     M + +  LYF K  F P+  A+++ F   PI +    +      F
Sbjct: 12  RPITSAPPRLPTLAAMAVAVAILYFAKDVFLPLAIAVLLTFALAPIVAFL-RRAGLPRLF 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI-------- 113
             + +      +  V    + +      + +        +    +    SD         
Sbjct: 71  AVITSVAGGFLIVAVFSAVVAFQVSEVGQNISIYQYNIIEKIRTLKEASSDNSFFDRLNR 130

Query: 114 ---PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                G   +    K  + P          ++                  +    +   +
Sbjct: 131 FAERIGTEINRPEQKTQALPSDQPEEKPLLVQIFAPRHPVETLRSIIEPLVGPLATTGLV 190

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++ + F   +   +  +   L  +       +  +   K +    L   ++ I  G+ L 
Sbjct: 191 VVVVIFMLLEREELRDRFIRLVGYGDLHRTTEALQDAGKRVGQYLLTQLVVNITYGVPLA 250

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIE 288
              W+ G+P+    G++  ++  +P   P+    + ++L                   I 
Sbjct: 251 FGLWILGIPNAALWGMLAIVLRFVPYIGPVIAAILPLFLAFAVAPGWSLLLWTIGLFVII 310

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +++  + P+L G    L  L      +      G +GL +   L   + V+ + 
Sbjct: 311 ELLINNVIEPWLYGSRTGLSPLAIIVSAIFWTWLWGPVGLVLSTPLTVCLVVLGRH 366


>gi|255319865|ref|ZP_05361070.1| putative membrane protein [Acinetobacter radioresistens SK82]
 gi|262380394|ref|ZP_06073548.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
 gi|255303184|gb|EET82396.1| putative membrane protein [Acinetobacter radioresistens SK82]
 gi|262297840|gb|EEY85755.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
          Length = 372

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 93/361 (25%), Positives = 177/361 (49%), Gaps = 6/361 (1%)

Query: 1   MRETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M++     Q ++ + +   ++ +  + LK F  PVL A II + +WP+Y S      + S
Sbjct: 1   MQQYAPTLQRVLLFGLFFILVFLGFHVLKYFIVPVLWAAIIAYMTWPLYLSIQRMCGQRS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMW 118
           +  A +  V ++ +  +PL F  +    E + L  ++      G + VP ++ ++P    
Sbjct: 61  SISASVMIVLIILVIGIPLTFAIFILQHEGRNLYYELQRQIFSGHVSVPDFIRELPIIGK 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 K L+        +              +            + + F I++LFFFY
Sbjct: 121 EVTRTLKELNTDPQSITQNVAAWIQGH----LGYGRFVLNEISKNIIKLCFAIMSLFFFY 176

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           RDG +I +Q+ +  E +           + +  R+   G+ + AI + ++ G +Y +AGV
Sbjct: 177 RDGQTILRQVSTAMEKVIGPRIHHYMDTISETTRAVVYGVGLTAIAQAILAGLSYVVAGV 236

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P+ + L + T ++A+IP G P+++ +V+++L  +G    A  +F WG   +   D  +RP
Sbjct: 237 PNPMVLTIATFLLALIPFGTPVAYGSVALWLFSQGQTVEAIGVFAWGVCIVSTSDNVIRP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            ++ G  ++PFL   FG++GGV + GL+GLFIGPV++A+I  IW+E +    E +    +
Sbjct: 297 LVISGATQIPFLLIMFGVLGGVASFGLVGLFIGPVILAVILAIWREWLHETTEPEPMPDA 356

Query: 359 N 359
           +
Sbjct: 357 S 357


>gi|110835489|ref|YP_694348.1| hypothetical protein ABO_2628 [Alcanivorax borkumensis SK2]
 gi|110648600|emb|CAL18076.1| membrane protein, putative [Alcanivorax borkumensis SK2]
          Length = 373

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/347 (23%), Positives = 143/347 (41%), Gaps = 5/347 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q    + ++ +  V    ++ FFAP+  A  I    +P++   +++       +A+   
Sbjct: 11  EQRAFLFSLVAVSAVFALLIQPFFAPIFWACAISVIFYPLHKRLLARWPTRRNLVALFTL 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L ++P+L +    + E   L  KV             +     G    +   +  
Sbjct: 71  MLCVVLVVIPVLAVATSFVTEGVGLFQKVQSGEIDLASYVDKVKHAFPG---VQSLAERF 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                          T    F+ + A   G     + L++  M+   FF  RDG S+   
Sbjct: 128 DVDLEKIKEQAVKAFTGAGQFLAKRALAVGQNTFQFFLNLGLMLYLAFFLIRDGDSMVAM 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L     + +     +V R+T  G  ++AI +G + G  +W  G+P  +  GV+
Sbjct: 188 LIRALP-LGDEREELLFAKFAEVTRATIKGNLLVAITQGALGGLIFWWLGIPGALLWGVV 246

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A++++IP     + +  V++YL   G++  AT L L+G   + +VD  LRP LVG   K
Sbjct: 247 MAVLSLIPAVGAGLIWFPVALYLYAVGDMKEATVLILFGVFVIGLVDNILRPILVGRDTK 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LP     F  +GG+   G+ G  +GP+L AL    W   I    E  
Sbjct: 307 LPDYVVLFSTLGGLAMFGITGFAVGPLLAALFVAFWGIFIREFNEED 353


>gi|225572141|ref|ZP_03781005.1| hypothetical protein RUMHYD_00435 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040407|gb|EEG50653.1| hypothetical protein RUMHYD_00435 [Blautia hydrogenotrophica DSM
           10507]
          Length = 451

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 102/366 (27%), Gaps = 19/366 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------- 58
                M +++  +        P+L    I +   PI +    K                 
Sbjct: 28  FGIFQMGVLIRGISIFLHILMPILYGAAIAYLICPITNFLERKVFFRFLEHRHFHLSKRI 87

Query: 59  ----STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SD 112
                    +++ V + C+    L+ L    +  +  ++                +   +
Sbjct: 88  KSVVRYVSILLSLVFMCCIIYSLLMMLLPELIRSIVNIIYNFPSYILSAQKWINDVLEGN 147

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                +  E  +++    ++    +        +            +  +  +  I  + 
Sbjct: 148 SQLHSFFQEFLSQYSVKIEAYLTGNILPKLQETLQNFSEGVFDMLNVLKNLLIGAIVSVY 207

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L             L S           +  R   K       G  + ++  G++    
Sbjct: 208 ILADKEGFVAKSKMWLYSFLSPERANVVIRSMRFTHKTFGGFINGKLLDSLIIGILCYIG 267

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             L G P    + V+  +  +IP   P      S  L++  +        ++        
Sbjct: 268 TNLIGTPYATLISVVVGVTNVIPFFGPYLGAIPSAILILLVDPIQCIYFVIFVFALQQFD 327

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L P ++G    L        ++ G    G+ G+F+G  + A++  +  + I    + 
Sbjct: 328 GNILGPKILGESTGLSSFMVILAILMGGGLFGIFGMFVGVPVCAVLYAMTWKIIRRSLKK 387

Query: 353 KEKISS 358
           ++  + 
Sbjct: 388 RKLPTD 393


>gi|254563925|ref|YP_003071020.1| hypothetical protein METDI5610 [Methylobacterium extorquens DM4]
 gi|254271203|emb|CAX27215.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 679

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 109/359 (30%), Gaps = 32/359 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             ++  II+  L+F +    P+  A+++ F   P+ +    + +    F  +++ +    
Sbjct: 32  SLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFL-RRLKLGRAFAVLVSVLLAAG 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +       +      ++ EL   V    +        L     G     +   + +  QS
Sbjct: 91  IIAAVTTVIGV----QVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQS 146

Query: 133 LKILSETFLKTNGIDF-------------------------IPRFASRFGMIFLDYCLSI 167
            +   E+  K                                   A+           + 
Sbjct: 147 GEESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATA 206

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             + + L F       +  +L  L                 + +   FLG   +    G+
Sbjct: 207 GIVFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGV 266

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWG 285
           V+G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  
Sbjct: 267 VIGVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLF 326

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           A+   IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 327 ALVEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 385


>gi|306837020|ref|ZP_07469966.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
 gi|304567081|gb|EFM42700.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
          Length = 486

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 111/334 (33%), Gaps = 14/334 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+    + +    L F+     PV+ A+++    +P+ +   SK     T  AV   + +
Sbjct: 91  ILIAAGLGLAGFLLRFIWVGLLPVILAILVSTVLYPVTAWLRSK-GFPRTLAAVTTLLGL 149

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F      +      + K L+++          +               ++   ++  
Sbjct: 150 VVIFGGIFAAMAPMVTAQSKVLINEAEAGIMQLTKMVNDSPLDIEVDQLQSVFQDIVTFA 209

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +                 I         +     ++ + M+   FF  +DG      L  
Sbjct: 210 KGQ------------ASTIATGVVSGFSMASSIAVATVIMLFITFFILKDGDRFLPWLRK 257

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +  +++  V K +        I+A+ + + +G   W   VP  + + VIT  
Sbjct: 258 YTGNSAAWHITELTSRVWKTLSGFIQAQAIVALVDAVFIGLGLWALQVPLALVIAVITFF 317

Query: 251 MAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              IP    ++      I  L+   + NA        I   +    L+P L    + L  
Sbjct: 318 AGFIPIIGAVTAGALAVIIALVSNGLTNALLALALIIIVQQVESNVLQPILQSKAMGLHA 377

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +  G    G++G F+   + A IAV+ +
Sbjct: 378 AIVLLSITVGSTLAGIVGAFLAVPVAATIAVVLR 411


>gi|150377269|ref|YP_001313864.1| hypothetical protein Smed_5154 [Sinorhizobium medicae WSM419]
 gi|150031816|gb|ABR63931.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 663

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 103/354 (29%), Gaps = 22/354 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +  ++     +  LYF +  F P+  A+++ F   P+ S    +     +   V   
Sbjct: 34  RSRLPTFVATAATVAVLYFARDVFLPLAIAILLTFALAPLVSKL-RRVGCPRSVAVVGTV 92

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                        +      ++ E+   +     + +   R L +        +   + +
Sbjct: 93  TIAFLFLFAFSGVVAM----QVSEVAQNLPTYQYNIVEKVRSLKETGSESQILDRLGRVM 148

Query: 128 SHPQSLKILSETFLKTN---------------GIDFIPRFASRFGMIFLDYCLSIIFMII 172
                     E  L+ +                               L    +   +++
Sbjct: 149 ERINIEISRPEPELRASPEAEPERKPVLVEIFSPQRPVETLKNIINPLLGPLATTGLVLV 208

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            + F   +   +  +   L  +       +  +     +    L   ++ I  G+ L   
Sbjct: 209 VVIFMLFEREDLRDRFIRLVGYGDLHRTTEALQDAGARVGRYLLMQLVVNITYGIPLAIG 268

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELF 290
             L G+P+ V  G++  ++  +P   P+   A+ ++L                   +   
Sbjct: 269 LSLLGIPNAVLWGMLAILLRFVPYIGPVIAAALPLFLAFAAAPGWSLLIWTAALFIVLEL 328

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + +  + P+L G    L  L      +      G +GL +   L   + V+ + 
Sbjct: 329 LSNNVVEPWLYGSRTGLSPLAIIVSAIFWAWLWGPVGLVLSTPLTVCLVVLGRH 382


>gi|111017108|ref|YP_700080.1| hypothetical protein RHA1_ro00086 [Rhodococcus jostii RHA1]
 gi|110816638|gb|ABG91922.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 478

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 105/343 (30%), Gaps = 15/343 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G     + + ++  +   +G    +  A  +     P  S  +               V 
Sbjct: 150 GAAGVAVTYALIEVVLAARGVLVLIAVAAFLAIGLEPAVSWLVRH-GFPRWAAVATVFVL 208

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +    L       + +   LV        H       L ++              S 
Sbjct: 209 AFAVLAGFLAAAIPPMVTQGGALVHNAPDYLGHLEQRYPVLEEL--------------ST 254

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+      L  +    +       G          + +++   +F  D   I   + 
Sbjct: 255 RFHLQDELRRALDASNAPMVVGGLVGAGKFVFSAISGTVIVVVLTAYFLADFAHIRSSIY 314

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  +        I   +   +    LG  +I++   ++         VP  + L V+ A
Sbjct: 315 RLAPNSRRPRTILIGDEIFAKVGGYVLGNLLISLITAVLTFVWLVAFDVPYPLLLAVLVA 374

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP         V   + +  ++  +    ++        D  L P ++G  +K+P 
Sbjct: 375 VLDLIPVVGSTLAGVVVALVALTVSLLVSLATIVFFIALRLFEDYLLVPRIIGRTVKVPP 434

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + T   ++ G   +G++G  +   + A + ++ +E++    + 
Sbjct: 435 MVTVVAVLIGGALLGIVGALLAIPVAAAVLLLARETVFPQLDR 477


>gi|222086043|ref|YP_002544575.1| permease protein [Agrobacterium radiobacter K84]
 gi|221723491|gb|ACM26647.1| permease protein [Agrobacterium radiobacter K84]
          Length = 392

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 158/358 (44%), Positives = 219/358 (61%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I    +YF  GF  PVL+A +IGF +WP+YS  + +   ++T 
Sbjct: 22  RMALIPSISAARWLLILIAAAGIYFFYGFLIPVLAAAVIGFATWPLYSDLLRRTGGNTTL 81

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA   ++   ++P++    Y   E++E     V  N+ G P P+W+  +P       
Sbjct: 82  AAAIAIAFIVTFLVLPIVLSAIYMAGEVREWFGWAVHVNRDGAPPPQWILALPMVGAWLG 141

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              +    I  I R     G       L+++FM+IALFF YRDG
Sbjct: 142 DQWTQYIGSPGSIGELAQLISGAHIGNIYRAVLAAGGGAFHVILTLLFMLIALFFIYRDG 201

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +Q+D LGE + P  W++ISR+VP  I ST +GMT+IAIGEG+VLG AYW+AG PS 
Sbjct: 202 SMFVRQVDLLGERILPNRWERISRVVPATISSTVMGMTLIAIGEGIVLGVAYWIAGAPSA 261

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LGV+T +MA++PGGAP+S + VSIYL+  G+++    LF+WG +ELFIVDKTLRP LV
Sbjct: 262 ITLGVLTGVMALVPGGAPLSMSLVSIYLIASGSLWAGIALFVWGTVELFIVDKTLRPKLV 321

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMA+I  IW+E I   +  +E+ +  
Sbjct: 322 GGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMAIIVAIWREWIREAELTEEQHAQE 379


>gi|163853956|ref|YP_001641999.1| hypothetical protein Mext_4560 [Methylobacterium extorquens PA1]
 gi|163665561|gb|ABY32928.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 668

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 109/359 (30%), Gaps = 32/359 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             ++  II+  L+F +    P+  A+++ F   P+ +    + +    F  +++ +    
Sbjct: 21  SLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFL-RRLKLGRAFAVLVSVLLAAG 79

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +       +      ++ EL   V    +        L     G     +   + +  QS
Sbjct: 80  IIAAVTTVIGV----QVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQS 135

Query: 133 LKILSETFLKTNGIDF-------------------------IPRFASRFGMIFLDYCLSI 167
            +   E+  K                                   A+           + 
Sbjct: 136 GEESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATA 195

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             + + L F       +  +L  L                 + +   FLG   +    G+
Sbjct: 196 GIVFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGV 255

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWG 285
           V+G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  
Sbjct: 256 VIGVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLF 315

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           A+   IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 316 ALVEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 374


>gi|218532897|ref|YP_002423713.1| hypothetical protein Mchl_5020 [Methylobacterium chloromethanicum
           CM4]
 gi|218525200|gb|ACK85785.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 679

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 109/359 (30%), Gaps = 32/359 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             ++  II+  L+F +    P+  A+++ F   P+ +    + +    F  +++ +    
Sbjct: 32  SLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFL-RRLKLGRAFAVLVSVLLAAG 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +       +      ++ EL   V    +        L     G     +   + +  QS
Sbjct: 91  IIAAVTTVIGV----QVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQS 146

Query: 133 LKILSETFLKTNGIDF-------------------------IPRFASRFGMIFLDYCLSI 167
            +   E+  K                                   A+           + 
Sbjct: 147 GEESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATA 206

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             + + L F       +  +L  L                 + +   FLG   +    G+
Sbjct: 207 GIVFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGV 266

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWG 285
           V+G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  
Sbjct: 267 VIGVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLF 326

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           A+   IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 327 ALVEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 385


>gi|256784808|ref|ZP_05523239.1| hypothetical protein SlivT_09978 [Streptomyces lividans TK24]
          Length = 439

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 108/359 (30%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +         + + L G    VL A  +     P  S    +   
Sbjct: 37  RMPRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINVLIAFFLALAIEPAVSWMAGR-GM 95

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
              F   +  ++V+      +  L      ++ ++V +        I             
Sbjct: 96  RRGFATFLVFLAVLIAAAGFVTLLGSMLAGQIVKMVEEFPDYLDSVINWVNGH------- 148

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +   L      + L  +    N +              L     ++ +++  F+F
Sbjct: 149 -----FHTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLFQLLTVLLFSFYF 203

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+      A   +   I             ++A+  G+       +  
Sbjct: 204 AADGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALVSGVAHYILLEILE 263

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP   AL V   +++  IP        A+ + +    N + A  + ++  I     +  L
Sbjct: 264 VPYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVL 323

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 324 QPKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 382


>gi|94309527|ref|YP_582737.1| hypothetical protein Rmet_0582 [Cupriavidus metallidurans CH34]
 gi|93353379|gb|ABF07468.1| conserved hypothetical protein; putative membrane protein
           [Cupriavidus metallidurans CH34]
          Length = 367

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 140/353 (39%), Gaps = 5/353 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ ++SW  Y+           
Sbjct: 1   MSSGQLIEKLAAVFALIVLIGGSLLVLAPFATALLWGAILAYSSWHPYTVLTRWLGNRRG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
             A+I  +    + + P ++        + EL + V    +H    +P WLS +P     
Sbjct: 61  LAALICVLIATVIVLGPFVYAGASFSAHIDELTALVNRYTEHGIPQLPDWLSSLPFVGPQ 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E     +    S  + S   L       +       G         +   I+  FFFY 
Sbjct: 121 IESAWNKVITADSETVASLRKLIAPVGHALLGAGLSIGAG----LGQLALSIVLAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G      +      +       +  +    ++    G+   A  + ++ G  +W+AGVP
Sbjct: 177 GGELAVDWVRGGMRRVSGDRADHLLSLAGSTVKGVVYGVLGTAFVQAVLAGIGFWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               LG IT  ++++P G P+++   +++L   G    A  + +WGA  + + D  ++P 
Sbjct: 237 GAAILGFITFFLSVVPMGPPLAWIPAALWLYHTGETGWAIFMVVWGAAVVGMADNVIKPL 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     LP +    G++GG    G LG+FIGP ++A+   + ++  +  +E 
Sbjct: 297 LISKGTGLPLIWIMMGVLGGALAFGFLGVFIGPTVLAVAYALLRDWTIGNQER 349


>gi|170745511|ref|YP_001766968.1| hypothetical protein Mrad2831_6242 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170659112|gb|ACB28166.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 659

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 106/355 (29%), Gaps = 24/355 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +    K +       ++A +
Sbjct: 23  RGLLTLAVGVVLVAALYFGREVFIPLVLAVLLSFVLGPVVNLL-RKAKLGRVPSVIVAVL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +       +      ++  L   +             L     G     L   +  
Sbjct: 82  LALGVLGGIAAVIG----TQVAGLAGNLPQYQATVQRKVAGLQQGWLGEANRILQKFNHQ 137

Query: 129 HPQSLKILSETFLKTNGIDFI-----------------PRFASRFGMIFLDYCLSIIFMI 171
                +                                   A +     +     +  ++
Sbjct: 138 VHDVTQKADAAGTTAATGPAGETPKAQLVRVEQPEPSPFALAEKVLGPIVSPLTDVGIVL 197

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + + F       +  ++  L                   + + FL    +    G+++G 
Sbjct: 198 VVVVFLLLQREDLRNRMIRLFGSSDLHRTTVAMDDAAGRLGTYFLAQLGMNATFGVIVGI 257

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF- 290
             W  GVP+ +  GV +AIM  IP    I+   + + L    +   +  +       +  
Sbjct: 258 GLWFIGVPNPLLWGVFSAIMRFIPYIGAIASGILPVALAAAVDPGWSMVIATAALFLVAE 317

Query: 291 -IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +  + + P L G    L         +      G +GL +       + V+ + 
Sbjct: 318 PLFGQVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|325263797|ref|ZP_08130530.1| membrane protein [Clostridium sp. D5]
 gi|324030835|gb|EGB92117.1| membrane protein [Clostridium sp. D5]
          Length = 449

 Score =  152 bits (385), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 110/364 (30%), Gaps = 17/364 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------- 57
              + +  I      + G   P++  L I +   PI                        
Sbjct: 56  FALLRLPAISGVFKEIFGVLKPIVYGLAIAYLLNPIVDFVEEHLRPFLEKKLQDQKRIHA 115

Query: 58  -SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIP 114
            S         + ++ + I     +       +++++  V       +     +   D  
Sbjct: 116 ISRGTGIFAGVLVLLFIIIALFNMMIPELYGSIRDMILTVPSQLNQLVDKVMEMNSQDST 175

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            G   S +  +     Q+             +  +           L+  + II  I  L
Sbjct: 176 LGQLLSNILKEATDFIQTWMRTDLLNQINVVMSNLTVGVINIISELLNVVIGIIISIYVL 235

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F   +      + + ++ +         ++    ++     +G  I +   G++      
Sbjct: 236 FSKEKFASQSKKLVYAVFKPSHANMILHLTIKSNEIFGGFIIGKIIDSAIIGVLCFIGLS 295

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P  + + VI  +  +IP   P      S  L++  +        L+  +   +   
Sbjct: 296 MLKMPYTLLVSVIVGVTNVIPFFGPYIGAIPSAILIMLTDPKMGIYFILFILVLQQLDGN 355

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            + P ++G    L      F ++ G    G++G+ +G    A+I  I    I  + E K+
Sbjct: 356 VIGPKILGDSTGLSAFWVVFAILLGGGLFGVIGMILGVPTFAVIYYIINMLINHMLEKKK 415

Query: 355 KISS 358
             + 
Sbjct: 416 LPTE 419


>gi|260102475|ref|ZP_05752712.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260083712|gb|EEW67832.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
          Length = 399

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 116/343 (33%), Gaps = 4/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 42  ISFVLNPAWVFFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 102 WIINILVPIAQNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        I  I    S   MI +            LFF  +DG  +   +       
Sbjct: 162 KSGQSTINATIGNISSAVSIITMIVMTLLT----APFILFFMLKDGHQLRPYITKFAPEH 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + + + ++   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 218 WQSSFSQLLYDINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                        + I  +      + +   IE  I  + L P ++G  +++  + T   
Sbjct: 278 YFGTPLALIPVFVIAIMTSGSMVIKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+G     GL G+F G  + A++ +I        +   E  S 
Sbjct: 338 LIGASSVWGLWGVFFGIPIYAILKIIVSRVYNYYRRESEIFSE 380


>gi|89053547|ref|YP_508998.1| hypothetical protein Jann_1056 [Jannaschia sp. CCS1]
 gi|88863096|gb|ABD53973.1| protein of unknown function UPF0118 [Jannaschia sp. CCS1]
          Length = 398

 Score =  152 bits (384), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 113/347 (32%), Gaps = 14/347 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q +   +   + L+ L+ L G   P L    I +   P+      +   S      +  
Sbjct: 41  QQAMYWSISAAVFLLLLWVLGGVIMPFLVGGAIAYFLDPVADRLE-RLGCSRAMATTLIF 99

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++   +  +L +    + +   LV+      +                          
Sbjct: 100 VIMIVAVVTIVLAIVPLLVQQASGLVAAAPGIFEQLRDFL----------TERFPGAFSD 149

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             P    + +      +    + +         ++  + I+ + +  F+   D   +  +
Sbjct: 150 GSPVQTSLSNLGETIQSRGAELLQTVLSSAAGVVNVIVFIVVVPVVAFYMLLDWDRMIAR 209

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D L         + ++  + + + S   G   + +  G     A  + G+   + +G+I
Sbjct: 210 IDQLLPRDHAPTIRMLAGRIDRTLASFVRGQGTVCLVLGTFYAVALMVVGLQFGLVVGLI 269

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++  IP    +    ++I L      G  +    +     +   +    L P LVG  
Sbjct: 270 AGLLTFIPYVGALVGGVLAIGLALFQFWGEWWWIISVVAIFMVGQALEGNVLTPKLVGSS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           + L  +   F L       G +G+ +G  + A+I V+ +  +   +E
Sbjct: 330 VGLHPVWLIFALSAFGTVFGFVGMLVGVPVAAVIGVLVRYFVERYQE 376


>gi|325123669|gb|ADY83192.1| hypothetical protein BDGL_002606 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 372

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 166/353 (47%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIA 66
            + ++  +   +I +    LK F  PVL A II + +WPIY        ES  T  A + 
Sbjct: 9   QRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGESRNTLNATLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
              V+ +  +P     +    E + L   +      G + VP ++ D+P           
Sbjct: 69  ISLVILVVGIPFTCAVFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVGKEISRTLN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L++  +  I +      +       +            + + F + +LFFFYRDG  I 
Sbjct: 129 ELNNDPNSTIQNIAAWVQSH----LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQMIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 SQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IVTFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +    +
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPEPMPKT 357


>gi|293610761|ref|ZP_06693061.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827105|gb|EFF85470.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 372

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 92/353 (26%), Positives = 166/353 (47%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-TFLAVIA 66
            + ++  +   +I +    LK F  PVL A II + +WPIY        ES  T  A + 
Sbjct: 9   QRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGESRNTLNATLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
              V+ +  +P     +    E + L   +      G + VP ++ D+P           
Sbjct: 69  ISLVILVVGIPFTCAVFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVGKEISRTLN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L++  +  I +      +       +            + + F + +LFFFYRDG  I 
Sbjct: 129 ELNNDPNSTIQNIAAWVQSH----LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQMIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 SQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IVTFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +    +
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPEPMPKT 357


>gi|212704261|ref|ZP_03312389.1| hypothetical protein DESPIG_02316 [Desulfovibrio piger ATCC 29098]
 gi|212672341|gb|EEB32824.1| hypothetical protein DESPIG_02316 [Desulfovibrio piger ATCC 29098]
          Length = 368

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 141/342 (41%), Gaps = 6/342 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                ++  + L  L+ L+ FF  +   ++I   S P+Y +   ++       A+   + 
Sbjct: 11  RAFLLLLAGVSLAFLWMLRPFFDVIFWGIVIALLSTPVYDALQRRRMG-RNLAALTCVIL 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L IVP  ++FY  + E+  L +++             L ++  G    + W     +
Sbjct: 70  SLVLIIVPCAYIFYTFINEVANLYARLTSGGHDIRETLERLREVAPG---VQDWLTRYGY 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +     + L       + R     G   +++ + +  M+   FF  RDG  +   L 
Sbjct: 127 GPEVITQKLSELAVKISGLVARNTVALGGSTVNFLVDLCIMLYLAFFLVRDGKQLRVLLI 186

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        +     +V+R+T  G  ++A+ +G + G  +W+ G+ + V  GV+  
Sbjct: 187 RALPF-GDHREDLLFAKFAEVLRATVKGSLLVAMAQGALGGLIFWILGIKAPVLWGVVMT 245

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++++IP     + +  V+ YLL+ G+  +   L  +G   + + D  LRP LVG   KLP
Sbjct: 246 LLSLIPVVGAGVVWAPVAGYLLLTGDHVSGVVLLAYGVFVIGLADNILRPVLVGRDTKLP 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                   +GG    G+ G   GP+L  L   +WK  +   K
Sbjct: 306 DFMVLLSTLGGFSLFGMDGFVTGPMLAVLFVTVWKIFMDEFK 347


>gi|240141410|ref|YP_002965890.1| hypothetical protein MexAM1_META1p5009 [Methylobacterium extorquens
           AM1]
 gi|240011387|gb|ACS42613.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens AM1]
          Length = 677

 Score =  152 bits (384), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 53/359 (14%), Positives = 109/359 (30%), Gaps = 32/359 (8%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             ++  II+  L+F +    P+  A+++ F   P+ +    + +    F  +++ +    
Sbjct: 32  SLVVFAIIVAGLFFAREVLIPIAIAVLLSFVLGPLVNFL-RRLKLGRAFAVLVSVLLAAG 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +       +      ++ EL   V    +        L     G     +   + +  QS
Sbjct: 91  IIAAVTTVIGV----QVAELAQDVPRYQRTVERKIEGLRAGTLGQTMDYIANINRAIHQS 146

Query: 133 LKILSETFLKTNGIDF-------------------------IPRFASRFGMIFLDYCLSI 167
            +   E+  K                                   A+           + 
Sbjct: 147 GEESKESAEKAKQQAARDSNRKAEPEPPKPLLVQVEERRPGPLELATTVLAPVAQPLATA 206

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             + + L F       +  +L  L                 + +   FLG   +    G+
Sbjct: 207 GIVFVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGV 266

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWG 285
           V+G   W+ GVPS V  G+   +M  +P         + I L    +   +  L  FL  
Sbjct: 267 VIGVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVLSTFLLF 326

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           A+   IV + + P + G    +         +      G +GL +   L   + V+ + 
Sbjct: 327 ALVEPIVGQIIEPLVYGHSTGVSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 385


>gi|161507183|ref|YP_001577137.1| putative permease [Lactobacillus helveticus DPC 4571]
 gi|160348172|gb|ABX26846.1| putative permease [Lactobacillus helveticus DPC 4571]
          Length = 399

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 116/343 (33%), Gaps = 4/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 42  ISFVLNPAWVFFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 102 WIINILVPIAQNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        I  I    S   MI +            LFF  +DG  +   +       
Sbjct: 162 KSGQSTINATIGNISSAVSIITMIVMTLLT----APFILFFMLKDGHQLRPYITKFAPEH 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + + + ++   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 218 WQSGFSQLLYDINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                        + I  +      + +   IE  I  + L P ++G  +++  + T   
Sbjct: 278 YFGTPLALIPVFVIAIMTSGSMVIKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+G     GL G+F G  + A++ +I        +   E  S 
Sbjct: 338 LIGASSVWGLWGVFFGIPIYAILKIIVSRVYNYYRRESEIFSE 380


>gi|107026899|ref|YP_624410.1| hypothetical protein Bcen_4556 [Burkholderia cenocepacia AU 1054]
 gi|105896273|gb|ABF79437.1| protein of unknown function UPF0118 [Burkholderia cenocepacia AU
           1054]
          Length = 398

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 136/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A++   
Sbjct: 56  QKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVTMS 115

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +       +         + L    L+
Sbjct: 116 LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLLQKYGLT 175

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 176 NIPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 234

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 235 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 293

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 294 AFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 353

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 354 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 398


>gi|113968823|ref|YP_732616.1| hypothetical protein Shewmr4_0479 [Shewanella sp. MR-4]
 gi|113883507|gb|ABI37559.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 372

 Score =  152 bits (384), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 161/349 (46%), Positives = 227/349 (65%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   + K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMVKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P       L  
Sbjct: 64  IALVLIILGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG S+
Sbjct: 124 QQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGESV 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA 
Sbjct: 184 AKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAF 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGP
Sbjct: 244 GVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGP 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           IKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +      +
Sbjct: 304 IKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDDPSTE 352


>gi|271963232|ref|YP_003337428.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270506407|gb|ACZ84685.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 443

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 114/341 (33%), Gaps = 15/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +  + +  +L   +     V+ A+ +     P   S   ++     +   I   +V+
Sbjct: 117 MGLLTSWALAQALVTSRSVIVLVVVAMFLALGLNPAVESLQRRRLARR-WAISIVFGAVI 175

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             F++  L +      E    +S V    Q  +  P                 +  S  Q
Sbjct: 176 LFFVLFGLAIVPPVSQEAASFISAVPGYTQELLANPT--------------LKELDSDYQ 221

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L  + +          +       G +  +   S + +++   +F     SI   L  L
Sbjct: 222 ILTRIGDYITSGGLAQTVAGGLVGAGAVVFNAFFSGVTLLVLTLYFLGSLPSIKDYLFRL 281

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + +   +   I     G  +I++  G+V       AGV   +AL ++ A+ 
Sbjct: 282 VPSSRRERTRGLGDEIISGIGGYVAGNLLISVIAGVVTWVFLAFAGVEYALALALVVAVT 341

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP         +   + +  +        ++  +   + +  + P ++   + +    
Sbjct: 342 DLIPLVGATIGAVLVSGVALLQSGTLGIACAIFFLVYQQVENYLIYPRVMKRSVDVAPAV 401

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           T    + G   +G++G  +   + A IA+I +E ++  +  
Sbjct: 402 TVIAALFGGALLGIVGALLAIPVAAAIALIIREVVIPRQAR 442


>gi|227114498|ref|ZP_03828154.1| hypothetical protein PcarbP_16133 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 389

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 143/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A ++     P+ S    K  + +   +++  
Sbjct: 7   TKGFFILILFIVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGVASLLTV 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  L  +PL  +    ++E+  + +++  +N     V   L       WA     +H 
Sbjct: 67  LIIFLLVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELIQHLPR-WARHFLAEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++       G     + +    M+  LFF  +DG  +   
Sbjct: 126 LDNAAKIQQELSQVVLKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGAYLVNL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G +
Sbjct: 186 ILESLP-LSTHVKHHLLVKFAAVSRATVKGTVVVAIVQGTLGGIAFSIAGIEGSLLWGSL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +I+L     ++ A  +  +  + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        +EN E I  +F
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 359


>gi|28378815|ref|NP_785707.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254557021|ref|YP_003063438.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300768859|ref|ZP_07078753.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|28271652|emb|CAD64558.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254045948|gb|ACT62741.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300493592|gb|EFK28766.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 384

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 130/359 (36%), Gaps = 19/359 (5%)

Query: 9   QGIMRWMIMFIILVSLYFL-----------KGFF----APVLSALIIGFTSWPIYSSFIS 53
           Q ++R +++ +++++++F+           + FF     P++ A ++ +   P+      
Sbjct: 13  QRLIRILVVILLVLTIFFMGKQVDWLLDPVRQFFSIVGLPIILAGVLYYLLNPLVDWLEK 72

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +     T+  +   + V+ L  + ++ +      +   +++      ++         + 
Sbjct: 73  RFRVRRTWTIIGLFIVVVALLALGIIAIIPTIRDQTLSIINDWPNYWKNASTEVNRWLND 132

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P      +      +    L     +   T  +  +    S    + +        M   
Sbjct: 133 PQLSSIRDQLESWNTDLSKLVSGRFSKYLTGTVTSLTGVFSTVTTVIIGLIT----MPFI 188

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+  RDG  + + +         + + ++   +   + +   G   +A    ++    Y
Sbjct: 189 LFYLLRDGHQLPKYMAKFVPTKARSGFLEVLTEINSQVSNYIRGQLTVAFFVAVMFAVGY 248

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            + G+   + LG+   I+ +IP          S+ + +  + +    + +   IE  I  
Sbjct: 249 SIIGLKFALTLGIAAGILNLIPYLGSFLAMVPSVVIALVTSPWMLVQVLIVFVIEQTIEG 308

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + + P ++G  + +  +     L+   +  GL+G+  G    A++ V+W       + +
Sbjct: 309 RFISPLVLGSSLAIHPITILVVLLAAGKIFGLMGVIFGIPGYAILKVLWTHLFDWYRRS 367


>gi|304395632|ref|ZP_07377515.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304356926|gb|EFM21290.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 412

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 134/353 (37%), Gaps = 4/353 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G    ++    +     L  +F+ +L A I+     P+ +   ++  + +   A+I  + 
Sbjct: 9   GFFILILAIATVAFFDVLSPYFSSILWAAILAVIFHPLKTWLRNRLGDRNGVAALITLLC 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +   PL  +    ++E   +  K+   +     V   L       WA     ++   
Sbjct: 69  ICLIVFTPLAIIASSLVVETNAVYHKLQTNSSQFPVVFADLLQHLP-RWAKHFLAENNLD 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                    +     G  ++   A   G     + +    M+  LFF  +DG  +   + 
Sbjct: 128 NAGQIQQKLSSFALKGGQYVAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGSYLVHLIL 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L       +      V R+T  G  ++ I +G++ G A+W  G+   +  G + A
Sbjct: 188 EALP-LSTYVKHHLMVKFAAVARATVKGTVVVGIVQGILGGLAFWFTGIDGSLLWGALMA 246

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +++IP     I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P
Sbjct: 247 FLSLIPAVGSAIIWVPAAIFFFATGALWKGLFLVGFFVVIVGLVDNILRPLLVGKDTKMP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
                   +GG+   G+ G  IGPV+ AL    W        +EN E I   F
Sbjct: 307 DYMILIATLGGMEIYGINGFVIGPVIAALFIACWNLLSGRDNRENIEAIDEEF 359


>gi|104773700|ref|YP_618680.1| hypothetical protein Ldb0590 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|116513697|ref|YP_812603.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|103422781|emb|CAI97420.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|116093012|gb|ABJ58165.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325125348|gb|ADY84678.1| Putative permease [Lactobacillus delbrueckii subsp. bulgaricus
           2038]
          Length = 378

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 4/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L A++  +   P+      K +   T   ++    V    I  +  L    
Sbjct: 48  FISAILPPLLVAMVQYYLMEPVVDKLEEKFKVPRTVTIMVIFAIVTVFLIWAINSLIPVV 107

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV       ++       L   P      +   K ++        + +    + 
Sbjct: 108 QSQIDSLVKNWPTIWKNSTNAVDELLHSPKFSGLRDSLQKQMTS----LQKNFSKSMGST 163

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +       +    +      ++      LFF  +DG  +   L       +     K+  
Sbjct: 164 VSSALGNLTSAVTVATAVFTTLATAPFLLFFMLKDGHKLRPFLVKFAPQRWEQATSKLLH 223

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V + + S  +G   +AI  G++    Y + G P   AL +    + +IP          
Sbjct: 224 EVNQAVSSYVIGQVSVAICVGIMFFIGYTIIGEPYGAALAICAGFLNLIPYFGAFIGLIP 283

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  ++     + +   IE  I  + + P +VG  +K+    T   ++G     GL
Sbjct: 284 ALIIALVTDLPMVAKVLVVFFIEQIIETRVISPLVVGNRLKMHPATTIIVMLGAGSVWGL 343

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            G+  G  + A++ ++        ++       +F
Sbjct: 344 WGVIGGIPIYAVMKILLTHVYRYYRKVSHLYDDSF 378


>gi|262196494|ref|YP_003267703.1| hypothetical protein Hoch_3308 [Haliangium ochraceum DSM 14365]
 gi|262079841|gb|ACY15810.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 452

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 110/351 (31%), Gaps = 11/351 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ M   + ++  + + I    L  L    AP+L+A  I +   P+     +        
Sbjct: 20  RQVMTMVRWLLYLVFVVIAYWVLQRLAPVLAPLLAAAGIAYLLDPLVEKLEA-SGMRRVV 78

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + L    +  L      ++    + +                     W   
Sbjct: 79  AVSLLITGFLGLLGGSVFILVPLVAEDLARFAASLPTMIAEVNQWLAGYGFEVPSRWEDY 138

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L +  LS   +      T      +  +         + L        + +  F+F  D 
Sbjct: 139 LQSDKLSAMLNDVAGPATTFAAAALGSVFGLLGTLAELLL--------VPVFAFYFLLDW 190

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I      +      A    +   + +V+     G   I   + ++  + + + G+   
Sbjct: 191 HEIIDATRRMIPPRHRATSISVIAEIDRVVSGWIRGQFTIVCIQAVLYAACFHVIGIHLA 250

Query: 242 VALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +++G++  ++ +IP    +      + + LL          +     +   +    L P 
Sbjct: 251 ISVGLLVGLLTIIPFLGTVVGAAITLVLVLLHWQGWVQLASVAAVFIVLHALEAAVLTPR 310

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +VG  + L      F ++ G + +G  G+ +   + A +AV+ +      +
Sbjct: 311 IVGKRVGLGETGALFAVLAGGQLLGFTGVLLAVPIAASVAVLVRRLWRYYE 361


>gi|308181014|ref|YP_003925142.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308046505|gb|ADN99048.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 384

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 131/359 (36%), Gaps = 19/359 (5%)

Query: 9   QGIMRWMIMFIILVSLYFL-----------KGFF----APVLSALIIGFTSWPIYSSFIS 53
           Q ++R +++ +++++++F+           + FF     P++ A ++ +   P+      
Sbjct: 13  QRLIRILVVILLVLTIFFMGKQVDWLLDPVRQFFSIVGLPIILAGVLYYLLNPLVDWLEK 72

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +     T+  +   + V+ L  + ++ +      +   +++      ++         + 
Sbjct: 73  RFRVRRTWTIIGLFIVVVALLALGIIAIIPTIRDQTLSIINDWPNYWKNASTEVNRWLND 132

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P      +      +    L     +   T  +  +    S    + +        M   
Sbjct: 133 PQLSSIRDQLESWNTDLSKLVSGRFSKYLTGTVTSLTGVFSTVTTVIIGLIT----MPFI 188

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+  RDG  + + +         + + ++   +   + +   G   +A    ++  + Y
Sbjct: 189 LFYLLRDGHQLPKYMAKFVPTKARSGFLEVLSEINSQVSNYIRGQLTVAFFVAVMFAAGY 248

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            + G+   + LG+   I+ +IP          S+ + +  + +    + +   IE  I  
Sbjct: 249 SIIGLKFALTLGIAAGILNLIPYLGSFLAMVPSVVIALVTSPWMLVQVLIVFVIEQTIEG 308

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + + P ++G  + +  +     L+   +  GL+G+  G    A++ V+W       + +
Sbjct: 309 RFISPLVLGSSLAIHPITILVVLLAAGKIFGLMGVIFGIPGYAILKVLWTHLFDWYRRS 367


>gi|295094550|emb|CBK83641.1| Predicted permease [Coprococcus sp. ART55/1]
          Length = 464

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 112/365 (30%), Gaps = 20/365 (5%)

Query: 9   QGIMRWMIMFIILVSLY----------FLKGFFAPVLSALIIGFTSWPIYSSFI------ 52
           + ++    + +    L+          +L     P +    I F                
Sbjct: 10  RTVIILCGVVLFAYVLFNFDKVSSMFSWLINILMPFVIGFAIAFVVNVPMKGLEKVLFKN 69

Query: 53  ---SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPR 108
                         +++ + ++ +    +  +       +     K+  A         +
Sbjct: 70  KDSRLYRFRRPVCLILSFLCIIAVLTFAITMIIPEMSKTITMFAEKLPSAMDDIQRKAIK 129

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            + D P  +   +    +     S  +       ++ +      AS      +D  + + 
Sbjct: 130 LMKDQPEIVDKIKSININWDALISNVVGIVKNGGSSVLSSTFSIASSVVGAVVDVLVGLF 189

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
           F    L         +   L ++        + +   +  K       G  + A   GL+
Sbjct: 190 FACYILAQKETLEKQVKGVLYAVFREEKADRFIQTCVLADKTFSKFISGQCLEACILGLM 249

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 +  +P  + + +I A+ A+IP             +++  +   A    +   + 
Sbjct: 250 FFITMTIFRIPYALTVSIIIAVFALIPVVGAFVGCFAGTIMILVEDPKRAIVFLIIFVVL 309

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    + P +VGG + LP +     ++ G   +G+LG+ I   L +++  + +E ++ 
Sbjct: 310 QQIEGNFIYPHVVGGSVGLPSIWVLVAVMLGGDMLGILGMLIFVPLFSVLYAMSEEYVVK 369

Query: 349 IKENK 353
              +K
Sbjct: 370 RLRDK 374


>gi|19552249|ref|NP_600251.1| hypothetical protein NCgl0984 [Corynebacterium glutamicum ATCC
           13032]
          Length = 490

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 104/345 (30%), Gaps = 14/345 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R +M + + +     +FI+   +        PV  A+II        S    K    S  
Sbjct: 59  RVSMWSLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSPNSWL-RKHGVPSVV 117

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I   +   +    L  +      + + L  +                     +W   
Sbjct: 118 SAFITIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGILSIQ------------LWLQG 165

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S   S           N    I               +++  +++  FFF +DG
Sbjct: 166 PPLNLDSGDLSRYFNEAAAWLQNQAGAIAGEIFSGLGAATSVIVTLGVVLVLTFFFLKDG 225

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                    +G      +  ++       +        +++  + + +G    + GVP  
Sbjct: 226 HRFLPWTRKIGGKQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMA 285

Query: 242 VALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +AL VIT +   IP     +      +  L+      A  + +       +    L P L
Sbjct: 286 LALSVITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLL 345

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               + L  +     +  G    G++G F+   + A+IAV ++  
Sbjct: 346 QSKAMNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFRYF 390


>gi|62389914|ref|YP_225316.1| hypothetical protein cg1166 [Corynebacterium glutamicum ATCC 13032]
 gi|41325250|emb|CAF19730.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032]
          Length = 493

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 104/345 (30%), Gaps = 14/345 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R +M + + +     +FI+   +        PV  A+II        S    K    S  
Sbjct: 62  RVSMWSLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSPNSWL-RKHGVPSVV 120

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I   +   +    L  +      + + L  +                     +W   
Sbjct: 121 SAFITIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGILSIQ------------LWLQG 168

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S   S           N    I               +++  +++  FFF +DG
Sbjct: 169 PPLNLDSGDLSRYFNEAAAWLQNQAGAIAGEIFSGLGAATSVIVTLGVVLVLTFFFLKDG 228

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                    +G      +  ++       +        +++  + + +G    + GVP  
Sbjct: 229 HRFLPWTRKIGGKQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMA 288

Query: 242 VALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +AL VIT +   IP     +      +  L+      A  + +       +    L P L
Sbjct: 289 LALSVITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLL 348

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               + L  +     +  G    G++G F+   + A+IAV ++  
Sbjct: 349 QSKAMNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFRYF 393


>gi|261823604|ref|YP_003261710.1| hypothetical protein Pecwa_4411 [Pectobacterium wasabiae WPP163]
 gi|261607617|gb|ACX90103.1| protein of unknown function UPF0118 [Pectobacterium wasabiae
           WPP163]
          Length = 389

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/355 (19%), Positives = 144/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A ++     P+ S    K  + +   +++  
Sbjct: 7   TKGFFILILFAVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGIASLLTV 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  +  +PL  +    ++E+  + +++  +N     V   L       WA    T+H 
Sbjct: 67  LIIFLIVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELLQHLP-KWARHFLTEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++       G     + +    M+  LFF  +DG  +   
Sbjct: 126 LDNAAKIQQELSQVALKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGSYLVNL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G +
Sbjct: 186 ILESLP-LSTHVKHHLLVKFAAVSRATVKGTAVVAIVQGTLGGIAFSIAGIEGSLLWGSL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +++L     ++ A  +  +  + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAVFLFATDMLWQAIFIVAFFVLVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        +EN E I  +F
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGIDEDF 359


>gi|253575325|ref|ZP_04852663.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845322|gb|EES73332.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 397

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 110/327 (33%), Gaps = 5/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
             K    P+L    I +   P+     +K+     +      + +  +  V ++ +    
Sbjct: 50  LFKTVLLPILLTGAIYYLLNPLVDWLETKR-IRRVYTITGLYLLIAGILTVLIMTVIPLV 108

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L+  +             L          E    +L    +      T L  N 
Sbjct: 109 QAQILSLIENLPRYTSEVQRQFESLIGSNFFHQVQESTGFNLDDLSNTLSERGTALLNNA 168

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I  F         +  L+II M   LF+  +DG  + + +       F      +  
Sbjct: 169 WSGIGGFLGAV----KNVVLAIITMPFILFYLLKDGKKLPEFILRYVPVRFREQTHHVMT 224

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I S   G  I++   G ++   + + G+   + L +I +  +++P   P      
Sbjct: 225 EMNSQISSYIRGQIIVSFCIGALMYVGFVIIGLDYSLTLAIIASFTSVVPYLGPAIAITP 284

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + I  +      L +   +   +  K + P ++G  +++  +   F ++      G+
Sbjct: 285 AIIVAIVTSPIMLLKLIVVWTVVQLVEGKFISPQIMGKTLRIHPITIIFVILTAGNLFGV 344

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           LG+ +     A++ VI+       +  
Sbjct: 345 LGVILAVPGYAVLKVIFTHLFQWFERR 371


>gi|227893168|ref|ZP_04010973.1| permease [Lactobacillus ultunensis DSM 16047]
 gi|227865034|gb|EEJ72455.1| permease [Lactobacillus ultunensis DSM 16047]
          Length = 400

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 117/343 (34%), Gaps = 4/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 42  ISFVLNPAWVFFSAVLPPLLLAIIQYYIMNPVVDWFEKKFKVPRVATIIVLFLFVIIALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  LV          +   +     P            + + Q    
Sbjct: 102 WIINILVPMAQNQINSLVKNWPHIWNDAVNTTQSALRDPRLSPVKGSLKSMIDNTQRTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        +  I    S   MI +            LFF  +DG  +   +       
Sbjct: 162 KSGQSTVNATLGNISSAVSIITMIVMTLLT----APFILFFMLKDGHQLRPYITKFAPEN 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A + K+   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 218 WQASFSKLLYDINYALASYIRGQITVAFWVGVMFTIGYIVIGLPYGLALAILAGFMNLIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      I + +  ++     + +   IE  I  + L P ++G  +++  + T   
Sbjct: 278 YFGTPLALIPVIVIAVMTSVPMLIKVLVIFVIEQAIETRILSPLVMGNKMEMHPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+G     GL G+  G  + A++ +I        +   E  S 
Sbjct: 338 LIGASSVWGLWGVIFGIPIYAILKIIVSRVYNYYRRESEIFSE 380


>gi|113866712|ref|YP_725201.1| membrane spanning protein/permease [Ralstonia eutropha H16]
 gi|113525488|emb|CAJ91833.1| hypothetical membrane spanning protein/Predictedpermease [Ralstonia
           eutropha H16]
          Length = 385

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 138/355 (38%), Gaps = 3/355 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ F+SW  Y+          +
Sbjct: 1   MSSGQLIEKIAAVFALIVLIGGSLLVLAPFTTALLWGAILAFSSWYPYTVLSRWLGNRRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+I  +    + + P ++        + EL + V    +HGIP    L      +   
Sbjct: 61  LAALICVLLATVVVLGPFVYAGASFSAHLDELSALVDRYREHGIP---QLPAWLSSLPYV 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + ++  +                I  +       G+        +   II  FFFY  
Sbjct: 118 GSYLQNSWNSVINADSEMVANLRKLIAPVGHMLLGAGLSIGAGLGQLALSIILAFFFYTG 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L +    +       +  +    ++    G+   A  + ++ G   W+AGVP 
Sbjct: 178 GELAIAWLRAGMHRIAGERADHLLELAGSTVKGVVYGVLGTAFIQAVLAGIGLWIAGVPG 237

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG +T  +++IP G P+ +   +++L   G    A  L +WG   + + D  ++P L
Sbjct: 238 AAILGFVTFFLSVIPVGPPLVWLPAALWLYHTGATGWAIFLVVWGVGVVSMADNIVKPLL 297

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +     +P +    G++GG    G LG+FIGP L+A+   + ++  +  +   ++
Sbjct: 298 ISKGTGMPLIWIMLGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQAEVKQ 352


>gi|50119081|ref|YP_048248.1| hypothetical protein ECA0120 [Pectobacterium atrosepticum SCRI1043]
 gi|49609607|emb|CAG73040.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 438

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/355 (20%), Positives = 145/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A ++     P+ S    K  + +   +++  
Sbjct: 46  TKGFFILILFVVTLAFFDILAPYYSAILWAAVLAIIFHPLKSKIRQKLNDRNGLASLLTV 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  +  +PL  +    ++E+  + +++  +N     V   L       WA    T+H 
Sbjct: 106 LIIFLIVFIPLGIIVSSLVVEINGVYTRLQDSNTQFPVVLAELFQHLP-KWARHFLTEHN 164

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++       G     + +    M+  LFF  +DG  +   
Sbjct: 165 LDNAAKIQQELSQVALKGGQYLAGSVLLIGKGTFTFFIGFGVMLYLLFFLLKDGSYLVNL 224

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L       +      V R+T  G  ++AI +G + G A+ +AG+   +  G +
Sbjct: 225 ILESLP-LSTHVKHHLLVKFAAVSRATVKGTVVVAIVQGTLGGIAFSIAGIEGSLLWGSL 283

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +I+L     ++ A  +  +  + + +VD  LRP LVG   K
Sbjct: 284 MAFLSLIPAVGSAIIWVPAAIFLFATDMLWQAIFIVAFFVLVIGVVDNILRPLLVGKDTK 343

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        +EN E IS +F
Sbjct: 344 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNILSGRDNQENIEGISEDF 398


>gi|227501979|ref|ZP_03932028.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
 gi|227077263|gb|EEI15226.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
          Length = 477

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 109/334 (32%), Gaps = 14/334 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+    + +    L F+     PV+ A+++    +P+ +          T  AV   + +
Sbjct: 91  ILIAAGLGLAGFLLRFIWVGLLPVILAILVSTVLYPVTAWL-RSVGFPRTLAAVTTLLGL 149

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F      +      + K L+++          +               ++   +S  
Sbjct: 150 VVIFGGIFAAMAPMVTAQSKVLINEAEAGIMQLTKMVNDSPLDIEVDQLQSVFQDIVSFA 209

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +                 I         +     ++ + M+   FF  +DG      L  
Sbjct: 210 KGQ------------ASTIATGVLSGVSMASSIAVATVIMLFITFFIIKDGDRFLPWLRK 257

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +  +++  + K +        ++A+ + + +G   W   VP  + + VIT  
Sbjct: 258 YTGNSAAWHITELTSRMWKTLSGFIQAQAVVALVDAVFIGLGLWALQVPLALVIAVITFF 317

Query: 251 MAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              IP    ++      I  L+   + NA        I   +    L+P L    + L  
Sbjct: 318 AGFIPIIGAVTAGALAVIIALVSNGLTNALLALALIIIVQQVESNVLQPILQSRAMGLHA 377

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +  G    G++G F+   + A IAV+ +
Sbjct: 378 AIVLLSITVGSTLAGIVGAFLAVPVAATIAVVLR 411


>gi|224283818|ref|ZP_03647140.1| hypothetical protein BbifN4_08325 [Bifidobacterium bifidum NCIMB
           41171]
 gi|313140972|ref|ZP_07803165.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
 gi|313133482|gb|EFR51099.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
           41171]
          Length = 534

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/354 (10%), Positives = 113/354 (31%), Gaps = 19/354 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      + ++  +I+    + ++     +      V+ ++ I     P+  S +     
Sbjct: 23  RPPDWWGRALLYTVIVVFAAIFVWTSWGKISTIVLDVVISIFIALAVEPLVVSMVRH-GW 81

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                + ++ + +  + +  L       + ++  +V  +       +             
Sbjct: 82  KRGLASAVSLIGLAVIVMALLTLFGNMFVQQLISMVKGLPSIYTEIVDA----------- 130

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +  +  +   ++L +     ++T+ I      A    M    + L+++ +++  ++ 
Sbjct: 131 -VKQYTSFDMPKIENLGMEIFKNVQTSWITDFAGQALTTTMGVFSFLLNLLTVLMVTYYI 189

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G  + + L           +     +V + I       +I+A            +  
Sbjct: 190 SAAGPKMRRSLCQWLGPNTQRRFLLGWTVVQEQISGFLFSRSILAAINATCTAVFLEIIH 249

Query: 238 VPSHVALGVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           VP  + L +   I++  +P     I      ++      ++    + ++  +   I +  
Sbjct: 250 VPYWLPLALFCGIVSQFVPTVGTYIGGALPVLFAWGSNGLWYGVGVLVFIIVYQQIENLI 309

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L P +    + L     F  ++      G LG F+   + A +  I+K      
Sbjct: 310 LSPKVSQRTMDLNPCVAFLAVLVMGALFGALGAFLALPVTASMQAIFKVYTKRY 363


>gi|310287916|ref|YP_003939174.1| hypothetical protein BBIF_1395 [Bifidobacterium bifidum S17]
 gi|309251852|gb|ADO53600.1| conserved hypothetical protein [Bifidobacterium bifidum S17]
          Length = 534

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/354 (10%), Positives = 112/354 (31%), Gaps = 19/354 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      + ++  +I     + ++     +      V+ ++ I     P+  S +     
Sbjct: 23  RPPDWWGRALLYTVIAVFAAIFVWTSWGKISTIVLDVVISIFIALAVEPLVVSMVRH-GW 81

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                + ++ + +  + +  L       + ++  +V  +       +             
Sbjct: 82  KRGLASAVSLIGLAVIVMALLTLFGNMFVQQLISMVKGLPSIYTEIVDA----------- 130

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +  +  +   ++L +     ++T+ I      A    M    + L+++ +++  ++ 
Sbjct: 131 -VKQYTSFDMPKIENLGMEIFKNVQTSWITDFAGQALTTTMGVFSFLLNLLTVLMVTYYI 189

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G  + + L           +     +V + I       +I+A            +  
Sbjct: 190 SAAGPKMRRSLCQWLGPNTQRRFLLGWTVVQEQISGFLFSRSILAAINATCTAVFLEIIH 249

Query: 238 VPSHVALGVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           VP  + L +   I++  +P     I      ++      ++    + ++  +   I +  
Sbjct: 250 VPYWLPLALFCGIVSQFVPTVGTYIGGALPVLFAWGSNGLWYGVGVLVFIIVYQQIENLI 309

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L P +    + L     F  ++      G LG F+   + A +  I+K      
Sbjct: 310 LSPKVSQRTMDLNPCVAFLAVLVMGALFGALGAFLALPVTASMQAIFKVYTKRY 363


>gi|227548170|ref|ZP_03978219.1| membrane protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079731|gb|EEI17694.1| membrane protein [Corynebacterium lipophiloflavum DSM 44291]
          Length = 468

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 111/339 (32%), Gaps = 17/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            ++R +I+ + L +L  L G F     PV+ A+I+     PI      +    S   A+I
Sbjct: 42  TVLRILIICVFLYALSRLIGTFWQGILPVILAIIVCTVLAPIAGFLRRRAHFPSALAALI 101

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + +    L    +  +        + L  +     Q               +W       
Sbjct: 102 SLLIFFGLIGTLVFLIAPDIAAHSRVLYLQAFEGIQRLQ------------LWLQGPPIN 149

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +  + +      N    I               +++  +++  FFF +DG    
Sbjct: 150 MDPDDLNEAVNTVAQWLQNQAGTIAGDVFAGIGTAAGLIVTLTVVLVLTFFFLKDGPRFL 209

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L +        +  ++       +        I+++ +   +G   WL GVP    L 
Sbjct: 210 PWLRATAGGRPGLHATELLTRAWNTLSGFIRAQAIVSLVDAFFIGVGIWLVGVPMAFTLS 269

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT I   IP    +       +  L+      A  + L       +    L P L    
Sbjct: 270 VITFIAGFIPIVGAVVAGALAVLIALVSLGFTEAIIVLLIVLAVQQLEGNVLSPVLQSKA 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  +     +  G    GL+G F+   + A+IAV+++
Sbjct: 330 MDLHPVIVLVSVTIGGGLFGLVGAFLAVPVAAMIAVVFR 368


>gi|193782537|ref|NP_435317.2| hypothetical protein SMa0136 [Sinorhizobium meliloti 1021]
 gi|307300731|ref|ZP_07580506.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307319142|ref|ZP_07598572.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|193072993|gb|AAK64729.2| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306895249|gb|EFN26005.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306904265|gb|EFN34850.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 670

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 103/337 (30%), Gaps = 22/337 (6%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF +  F P+  A+++ F   P+ S    +     +   +    +        L      
Sbjct: 51  YFARDVFLPLAIAILLTFALAPLVSRL-RRVGCPRSVAVIGTVTTAFL----FLSAFGVV 105

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             +++ E+   +     + +   R L +        E   + +    +     E  ++ +
Sbjct: 106 IAMQVSEVAQNLPTYQYNIVEKVRTLKETGSESQILERIGRVIERISTEISRPEPEVRAS 165

Query: 145 ---------------GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                                          L    +   +I+ + F   +   +  +  
Sbjct: 166 PEPTPETKPLLVEIFSPQRPIETLKNIINPLLGPLATTGLVIVVVIFMLLEREELRDRFI 225

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  +       +  +     +    L   ++ I  G+ L     L G+P+ V  G++  
Sbjct: 226 RLVGYGDLHRTTEALQDAGARVGRYLLMQLVVNITYGIPLAIGLSLLGIPNAVLWGMLAI 285

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++  +P   P+   A+ ++L        +  +       +   + +  + P+L G    L
Sbjct: 286 VLRFVPYIGPVIAAALPLFLAFAAAPGWSLLVWTAALFIVLELLSNNVVEPWLYGSRTGL 345

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L      +      G +GL +   L   + V+ + 
Sbjct: 346 SPLAIIVAAIFWAWLWGPVGLVLSTPLTVCLVVLGRH 382


>gi|291531870|emb|CBK97455.1| Predicted permease [Eubacterium siraeum 70/3]
          Length = 468

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 58/375 (15%), Positives = 107/375 (28%), Gaps = 35/375 (9%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------------------------- 53
           IL S++       PVL   +I +   PI +                              
Sbjct: 36  ILDSIFSFLSILTPVLYGFVIAYILCPIATFIEKPCLRRLFYTIQDKKREKFEREHPGEE 95

Query: 54  -------KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
                   ++ +      I  +  + +    +  L    +  +  LV+ +          
Sbjct: 96  PPPKTFPVRKVARVMSVAITMILALLILTGIIWVLLPQLIDTITMLVNNMPTYVTQISDW 155

Query: 107 PRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                     +  +  +          +           N  + I         +F++  
Sbjct: 156 VSQTLRNYPEVEAYVLQFTGGISDMLNNWLSTELLPQMNNIWNLISSNVMNIISVFMNLL 215

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L  +  I  L           + L  L +          +R V K       G  + +  
Sbjct: 216 LGFVIAIYFLNSKELFAAQFKKILYCLFKPKVATKIINSTREVNKSFGQFITGKILDSFI 275

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G+V      +  +P  V  GV+  I  +IP   P       + LL+  +        + 
Sbjct: 276 IGMVYVLLMSIFNMPYAVLCGVVMGIFCIIPYFGPFIGYIPCMLLLVLVDPIQCIYFTIM 335

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I   I    L P ++G    L      FG++ G    G +GL IG  L A++    K 
Sbjct: 336 VVIIQNIDGNVLAPKIIGDSTGLSSFWVIFGMLVGQGLFGFVGLIIGIPLFAVVYSFTKN 395

Query: 345 SIMAIKENKEKISSN 359
            +    ENK+  S +
Sbjct: 396 RVKKRLENKDLPSDS 410


>gi|21224113|ref|NP_629892.1| hypothetical protein SCO5767 [Streptomyces coelicolor A3(2)]
 gi|2687332|emb|CAA15873.1| putative membrane protein [Streptomyces coelicolor A3(2)]
          Length = 402

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 107/357 (29%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +         + + L G    VL A  +     P  S    +     
Sbjct: 2   PRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINVLIAFFLALAIEPAVSWMAGR-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F   +  ++V+      +  L      ++ ++V +        I               
Sbjct: 61  GFATFLVFLAVLIAAAGFVTLLGSMLAGQIVKMVEEFPDYLDSVINWVNGH--------- 111

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +   L      + L  +    N +              L     ++ +++  F+F  
Sbjct: 112 ---FHTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLFQLLTVLLFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+       +  VP
Sbjct: 169 DGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALVSGVAHYILLEILEVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    N + A  + ++  I     +  L+P
Sbjct: 229 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|308071200|ref|YP_003872805.1| hypothetical protein PPE_04507 [Paenibacillus polymyxa E681]
 gi|305860479|gb|ADM72267.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 387

 Score =  150 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 125/337 (37%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I +I    +  LK    PV+ + ++ +   P+      + +    +  ++  + ++ +  
Sbjct: 40  ISYIFTPVMVLLKTIILPVILSGVLYYLLNPLVDVLE-RNKVKRIYSIIVLFLLIIGVIA 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      +++ L+      ++        L     G      +   +    S   
Sbjct: 99  IVVTSVVPVIRDQIQGLIQNFPDYSEQVQRQFEKL----IGSDFVNQFQNTIHINPSELA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   ++ I+        F  +  +  L+I  +   LF+  +DG  + Q +  +   +
Sbjct: 155 SKASEKLSSFINNAWTGVGSFLGVVTETVLAIATVPFILFYLLKDGHKLPQFILKMLPPM 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     +I   +   + S   G  I++   G +L   Y + G+   + L VI +  +++P
Sbjct: 215 FRKETNRIMNEMNHQVSSYIRGQIIVSFCIGALLYIGYLIIGLDYSLTLAVIASFTSVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ + +  +      + +   +   I  K + P ++G  +++  +   F 
Sbjct: 275 YLGPVIAITPALIVALVTSPIMLLKMVIVWTVVQLIEGKFISPQIMGKSLRVHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++      G++G+ +     A++ VI        K+ 
Sbjct: 335 ILTAGNLFGVVGIVLAVPGYAVLKVIVTHLYSFFKKR 371


>gi|227501581|ref|ZP_03931630.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
 gi|227077606|gb|EEI15569.1| integral membrane protein [Corynebacterium accolens ATCC 49725]
          Length = 495

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 113/339 (33%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLY-FLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R +I+ + L ++Y  L  F     PVL ALII     PI     +K    +   A+ 
Sbjct: 63  WAVRLLIIGVFLFAIYHVLGSFWQGILPVLLALIICTVLNPIARWMRTK-GLPAGLAAIT 121

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +         +  +    M + + L  + V   Q               +WA      
Sbjct: 122 TILISSAAVGGLIASVAPDFMRQSQSLYLQTVSGIQQLQ------------LWAQGPPLN 169

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   S  I             I             + +++  +++  FFF +DG    
Sbjct: 170 LDSDDMSTYIDEAAGWLQERAGVIAGSVFTGIGNATSFFITVFIVLVLTFFFLKDGTKFL 229

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L          +  ++       +        ++++ + + +G    L GVP  +AL 
Sbjct: 230 PWLRDATGRRAGWHLTELLTRAWNTLGGFIRAQAVVSLIDAIFIGLGLVLIGVPLAMALA 289

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +IT I   IP    I       +  L+      A  +     +   +    L P+L    
Sbjct: 290 IITFIAGFIPFVGAIVSGALAVVIALVSLGFTQALLVLGLVLLVQQLEGNVLSPWLQAKA 349

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  +     ++ G    GL+G F+     A+IAV ++
Sbjct: 350 MNLHPVIVLVSVIVGSALFGLIGGFLAVPTAAMIAVAYR 388


>gi|306835741|ref|ZP_07468745.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
 gi|304568372|gb|EFM43933.1| integral membrane protein [Corynebacterium accolens ATCC 49726]
          Length = 495

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 113/339 (33%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLY-FLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R +I+ + L ++Y  L  F     PVL ALII     PI     +K    +   A+ 
Sbjct: 63  WAVRLLIIGVFLFAIYHVLGSFWQGILPVLLALIICTVLNPIARWMRTK-GLPAGLAAIT 121

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +         +  +    M + + L  + V   Q               +WA      
Sbjct: 122 TILISSAAVGGLIASVAPDFMRQSQSLYLQTVSGIQQLQ------------LWAQGPPLN 169

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   S  I             I             + +++  +++  FFF +DG    
Sbjct: 170 LDSDDMSTYIDEAAGWLQGRAGVIAGSVFTGIGNATSFFITVFIVLVLTFFFLKDGTKFL 229

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L          +  ++       +        ++++ + + +G    L GVP  +AL 
Sbjct: 230 PWLRDATGRRAGWHLTELLTRAWNTLGGFIRAQAVVSLIDAIFIGLGLVLIGVPLAMALA 289

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +IT I   IP    I       +  L+      A  +     +   +    L P+L    
Sbjct: 290 IITFIAGFIPFVGAIVSGALAVVIALVSLGFTQALLVLGLVLLVQQLEGNVLSPWLQAKA 349

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  +     ++ G    GL+G F+     A+IAV ++
Sbjct: 350 MNLHPVIVLVSVIVGSALFGLIGGFLAVPTAAMIAVAYR 388


>gi|117918932|ref|YP_868124.1| hypothetical protein Shewana3_0477 [Shewanella sp. ANA-3]
 gi|117611264|gb|ABK46718.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 368

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 161/348 (46%), Positives = 229/348 (65%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P       L  
Sbjct: 64  IALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG S+
Sbjct: 124 QQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGESV 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA 
Sbjct: 184 AKQLDIVGERILPARWHRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAF 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGP
Sbjct: 244 GVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGP 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           IKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    ++
Sbjct: 304 IKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDEPDH 351


>gi|315925492|ref|ZP_07921702.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621033|gb|EFV01004.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 510

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/377 (12%), Positives = 103/377 (27%), Gaps = 33/377 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEES- 58
             + ++  F+    ++    F            P+   +II F   P+ +    +     
Sbjct: 69  AFLVFLAAFVAYYLIFHAGQFTGSLQKIGRTMMPITFGVIIAFIMTPVLNFVEGRWLVPL 128

Query: 59  --------------------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL 98
                                +   +I    ++       + +    +  + +  ++V  
Sbjct: 129 FERRGRDVAGPGFTKDRRRMRSLSVLITMCFLLLCLYALTMIVVPQLLASLNQFFTQVPA 188

Query: 99  ANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
              +       L  +      W +  W    +    L            +  +       
Sbjct: 189 YVDNVNTWISRLPGNQPMLRKWLNAAWNTSSAQLTKLIKTRVLPNMGTILQTLTTQLVGA 248

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
             +F +  + +I  I  L           +   +L             R +         
Sbjct: 249 VRVFFNLIVGLIVAIYLLASKETFCAQGKKIAYALFRPNTANEVVGAFRFINATFNGFIS 308

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G  I +   G++      + G P  V + VI  +  +IP   P     +   L++     
Sbjct: 309 GKIIDSAIIGVLCFLGDSIIGTPYPVLVSVIVGVTNIIPFFGPYIGAIIGGVLILLIQPL 368

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A    ++  I        L P ++G    L      F ++      G+LG  IG  L A
Sbjct: 369 QALYFVIFVIILQQFDGNVLGPKILGDSTGLSSFWVIFAIMIFGGLFGVLGWVIGVPLFA 428

Query: 337 LIAVIWKESIMAIKENK 353
           +I    +  I    + +
Sbjct: 429 VIYAFARRVINHFLKKR 445


>gi|194288785|ref|YP_002004692.1| hypothetical protein RALTA_A0641 [Cupriavidus taiwanensis LMG
           19424]
 gi|193222620|emb|CAQ68623.1| conserved hypothetical protein, DUF20; putative membrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 394

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 139/356 (39%), Gaps = 5/356 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ F+SW  Y+           
Sbjct: 1   MSSGQLIEKIAAVFALIVLIGGSLLVLAPFTTALLWGAILAFSSWHPYTVLSRWLGNRRG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
             A+I  +    + + P ++        + +L + V    +     +P WLS +P     
Sbjct: 61  LAALICVLLATVIVLGPFVYAGASFSAHLDDLAALVDRYMEQGLPQLPLWLSSLPYVGSY 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +     + +  S  + +   L       +       G         +   II  FFFY 
Sbjct: 121 LQNSWDSVINADSEMVANLRKLIAPVGHVLLGAGLSIGAG----LGQLALSIILAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G      L +    +       +  +    ++    G+   A  + ++ G   W+AGVP
Sbjct: 177 GGEFAIAWLRAGMRRIAGERADHLLELAGSTVKGVVYGVLGTAFIQAVLAGIGLWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               LG +T  ++++P G P+ +   +++L   G    A  L +WG   + + D  ++P 
Sbjct: 237 GAAILGFVTFFLSVVPVGPPLVWLPAALWLYHTGATGWAIFLVVWGVGVVSMADNIVKPL 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+     +P +    G++GG    G LG+FIGP L+A+   + ++  +  +   ++
Sbjct: 297 LISKGTGMPLIWIMLGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQGELQR 352


>gi|311064797|ref|YP_003971522.1| hypothetical protein BBPR_1452 [Bifidobacterium bifidum PRL2010]
 gi|310867116|gb|ADP36485.1| Conserved hypothetical membrane spanning protein with DUF20 domain
           [Bifidobacterium bifidum PRL2010]
          Length = 534

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/354 (10%), Positives = 112/354 (31%), Gaps = 19/354 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      + ++  +I     + ++     +      V+ ++ I     P+  S +     
Sbjct: 23  RPPDWWGRALLYTVIAVFAAIFVWTSWGKISTIVLDVVISIFIALAVEPLVVSMVRH-GW 81

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                + ++ + +  + +  L       + ++  +V  +       +   +  +      
Sbjct: 82  KRGLASAVSLIGLAVIVMALLTLFGNMFVQQLISMVKGLPSIYTEIVDAVKQYTS----- 136

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    +   ++L +     ++T+ I      A    M    + L+++ +++  ++ 
Sbjct: 137 -------FDMPKIENLGMEIFKNVQTSWITDFAGQALTTTMGVFSFLLNLLTVLMVTYYI 189

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G  + + L           +     +V + I       +I+A            +  
Sbjct: 190 SAAGPKMRRSLCQWLGPNTQRRFLLGWTVVQEQISGFLFSRSILAAINATCTAVFLEIIH 249

Query: 238 VPSHVALGVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           VP  + L +   I++  +P     I      ++      ++    + ++  +   I +  
Sbjct: 250 VPYWLPLALFCGIVSQFVPTVGTYIGGALPVLFAWGSNGLWYGVGVLVFIIVYQQIENLI 309

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L P +    + L     F  ++      G LG F+   + A +  I+K      
Sbjct: 310 LSPKVSQRTMDLNPCVAFLAVLVMGALFGALGAFLALPVTASMQAIFKVYTKRY 363


>gi|167769436|ref|ZP_02441489.1| hypothetical protein ANACOL_00766 [Anaerotruncus colihominis DSM
           17241]
 gi|167668404|gb|EDS12534.1| hypothetical protein ANACOL_00766 [Anaerotruncus colihominis DSM
           17241]
          Length = 438

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 108/343 (31%), Gaps = 11/343 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVM 71
            +  + G   P + A  I +   P+                           ++  +   
Sbjct: 39  LVSTVAGLLMPFVYAFGIAYILNPVLKVVERVFLRRLFGTRIGDKPMRALAILLTYLFSA 98

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +    +    +L +  L++K+             L  + G    S      L    
Sbjct: 99  GMIAIFAKIVLPQLVLSISGLIAKMTAYLNSTETWLPGLLALLGDFDISATIETALRQYA 158

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + S   +      ++   ++      L   + II  I  L    R    I +   ++
Sbjct: 159 DTIMSSAMTMLKQLFPWMLSVSTGIASGLLTIVVGIIISIYMLMDKERFCAGIKKIWYAV 218

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +   ++     V      G  + ++  G++      L G+PS + + VI  + 
Sbjct: 219 LPKKNADWILDLAAEANHVFGGFIGGKILDSLIIGILCFIGMSLLGMPSAMLVSVIVGVT 278

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      S ++++      A    ++  I        L P ++G    L    
Sbjct: 279 NVIPYFGPFIGAIPSFFIILIDAPIKALWFLVFILILQQFDGNILGPKILGDSTGLSAFW 338

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             F ++      G +G+F+G  + ++I ++ +  I +    +E
Sbjct: 339 VIFAIMLFGGLYGFIGMFLGVPVFSVIYMLIQRFIDSRLSARE 381


>gi|167750104|ref|ZP_02422231.1| hypothetical protein EUBSIR_01073 [Eubacterium siraeum DSM 15702]
 gi|167656847|gb|EDS00977.1| hypothetical protein EUBSIR_01073 [Eubacterium siraeum DSM 15702]
          Length = 468

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/375 (15%), Positives = 106/375 (28%), Gaps = 35/375 (9%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------------------------- 53
           IL S++       PVL   +I +   PI +                              
Sbjct: 36  ILDSVFSFLSILTPVLYGFVIAYILCPIATFIEKPCLRRLFYTIQDKKREKFEREHPGEE 95

Query: 54  -------KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
                   ++ +      I  +  + +    +  L    +  +  LV+ +          
Sbjct: 96  PPPKTFPVRKVARVMSVAITMILALLILTGIIWVLLPQLIDTITMLVNNMPTYVTQVSDW 155

Query: 107 PRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                     +  +  +          +           N  + I         +F++  
Sbjct: 156 VSQTLRNYPEVEAYVLQFTGGISDMLNNWLSTELLPQMNNIWNLISSNVMNIISVFMNLL 215

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L  +  I  L           + L  L +          +R V K       G  + +  
Sbjct: 216 LGFVIAIYFLNSKELFAAQFKKILYCLFKPKVATKIINSTREVNKSFGQFITGKILDSFI 275

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G+V      +  +P  V  GV+  I  +IP   P       + LL+  +        + 
Sbjct: 276 IGMVYVLLMSIFNMPYAVLCGVVMGIFCIIPYFGPFIGFIPCMLLLVLVDPIQCIYFTIM 335

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I   I    L P ++G    L      FG++ G    G +GL IG  L A++    K 
Sbjct: 336 VVIIQNIDGNVLAPKIIGDSTGLSSFWVIFGMLVGQGLFGFVGLIIGIPLFAVVYSFTKN 395

Query: 345 SIMAIKENKEKISSN 359
            +    E K+  S +
Sbjct: 396 RVKKRLEKKDLPSDS 410


>gi|153217441|ref|ZP_01951183.1| conserved hypothetical protein [Vibrio cholerae 1587]
 gi|124113554|gb|EAY32374.1| conserved hypothetical protein [Vibrio cholerae 1587]
          Length = 361

 Score =  150 bits (379), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQTLFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRNFLDQQDRS 361


>gi|38233541|ref|NP_939308.1| hypothetical protein DIP0945 [Corynebacterium diphtheriae NCTC
           13129]
 gi|38199801|emb|CAE49464.1| Putative membrane protein [Corynebacterium diphtheriae]
          Length = 472

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 17/337 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           I   +I      + Y LK       PV+ ALI+    WP       +K   S   A+I+ 
Sbjct: 63  IRILIIAATAFATWYLLKQVWRGVLPVILALIVCTVLWPPTIWM-RRKGIPSGIAALISI 121

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++    F   +  +      + + L  +     Q               +W         
Sbjct: 122 LASFGFFGFLIWIIAPDVGRQSQTLYFQAFEGIQKIQ------------LWLQGPPLSLD 169

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   + +I +      +    I         +     +++  +++  FFF +DG      
Sbjct: 170 SEELNDRINAAAGWFQSKSGTIAGEIFSGLGVATSVLVTLGVVLVLTFFFLKDGEKFLPW 229

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +       +  ++       +        ++++ + + +G    L GVP  +AL V+
Sbjct: 230 VRGIVGKRAGWHLTELLARSWITLCGFVRAQALVSLVDAIAIGGGLLLLGVPMALALAVL 289

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T I   IP     ++ T   +  L+   +  A    +       +    L P L    + 
Sbjct: 290 TFIAGFIPIVGAFVAGTLAVLVALVSLGLTKAVITLIIVLAVQQLEGNVLSPILQSRAMN 349

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  +     +  G    G++G F+     A+IAV+++
Sbjct: 350 LHPVVVLVSVTLGGSLFGIVGAFLAVPTAAMIAVLFR 386


>gi|262280291|ref|ZP_06058075.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258069|gb|EEY76803.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 372

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIA 66
            + ++  +   +I +    LK F  PVL A II + +WPIY           +T  A + 
Sbjct: 9   QRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGETRNTLNATLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
              V+ +  +P     +    E + L   +      G + VP ++ D+P           
Sbjct: 69  ISLVILVVGIPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVGKEISRTLN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L++  +  I +      +       +            + + F + +LFFFYRDG  I 
Sbjct: 129 ELNNDPNSTIQNIAAWVQSH----LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQLIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI +  + G +Y++AGVP+ + L 
Sbjct: 185 TQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAFLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T I+A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IATFILALIPFGTPISYLGVGLWLFSQGQTMEAIGVIVWGILIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +    +
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPEPMPKT 357


>gi|297206302|ref|ZP_06923697.1| permease [Lactobacillus jensenii JV-V16]
 gi|297149428|gb|EFH29726.1| permease [Lactobacillus jensenii JV-V16]
          Length = 401

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 4/327 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI+  +  F      P++ AL+  +   PI   F  K +   T   ++  + V+   I
Sbjct: 42  ISFILNPAWVFFCAILPPLILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   + L   P            +   +    
Sbjct: 102 WVINSLLPIIQGQVDALIKNWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S     T  +  I    S   MIF+            LF+  +DG  ++  L       
Sbjct: 162 KSWQKTGTAALTNISSAVSVITMIFMTLLT----APFVLFYMLKDGHQLNGYLTKFAPRR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + ++   + + I +   G   +A+  G++    Y + G+P   AL V+ A M +IP
Sbjct: 218 WQDSFSRLLHDINEAISAYIRGQITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + +    +      + +  AIE  I  + + P +VG  +K+  + T   
Sbjct: 278 YFGTFIALIPVLIIASITSWGMLINVLIVFAIEQTIETRFISPIVVGNKMKMHPITTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+G     GL G+  G  + A++ +I 
Sbjct: 338 LIGASAVWGLWGVIFGIPIYAVVKIIV 364


>gi|145295169|ref|YP_001137990.1| hypothetical protein cgR_1111 [Corynebacterium glutamicum R]
 gi|140845089|dbj|BAF54088.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 490

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 104/345 (30%), Gaps = 14/345 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R +M + + +     +FI+   +        PV  A+II        S    K    S  
Sbjct: 59  RVSMWSLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSPNSWL-RKHGVPSVL 117

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I   +   +    L  +      + + L  +                     +W   
Sbjct: 118 SAFITIGTFFAITGAILWVIAPSIAQQSQVLYFQAFEGILSIQ------------LWLQG 165

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S   S           N    I               +++  +++  FFF +DG
Sbjct: 166 PPLNLDSGDLSRYFNEAAAWLQNQAGAIAGEIFSGLGAATSVLVTLGVVLVLTFFFLKDG 225

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                    +G      +  ++       +        +++  + + +G    + GVP  
Sbjct: 226 HRFLPWARKIGGEQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMA 285

Query: 242 VALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +AL VIT +   IP     +      +  L+      A  + +       +    L P L
Sbjct: 286 LALSVITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLL 345

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               + L  +     +  G    G++G F+   + A+IAV ++  
Sbjct: 346 QSKAMNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFRYF 390


>gi|282933487|ref|ZP_06338863.1| permease [Lactobacillus jensenii 208-1]
 gi|281302418|gb|EFA94644.1| permease [Lactobacillus jensenii 208-1]
          Length = 401

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 4/327 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI+  +  F      P++ AL+  +   PI   F  K +   T   ++  + V+   I
Sbjct: 42  ISFILNPAWVFFCAILPPLILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   + L   P            +   +    
Sbjct: 102 WVINSLLPIIQGQVDVLIKNWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S     T  +  I    S   MIF+            LF+  +DG  ++  L       
Sbjct: 162 KSWQKTGTAALTNISSAVSVITMIFMTLLT----APFVLFYMLKDGHQLNGCLTKFAPRR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + ++   + + I +   G   +A+  G++    Y + G+P   AL V+ A M +IP
Sbjct: 218 WQDSFSRLLHDINEAISAYIRGQITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + +    +      + +  AIE  I  + + P +VG  +K+  + T   
Sbjct: 278 YFGTFIALIPVLIIASITSWGMLINVLIVFAIEQTIETRFISPIVVGNKMKMHPITTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+G     GL G+  G  + A++ +I 
Sbjct: 338 LIGASAVWGLWGVIFGIPIYAVVKIIV 364


>gi|69248263|ref|ZP_00604697.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257880214|ref|ZP_05659867.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257883015|ref|ZP_05662668.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257885259|ref|ZP_05664912.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257891402|ref|ZP_05671055.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257893601|ref|ZP_05673254.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614402|ref|ZP_05712172.1| hypothetical protein EfaeD_01713 [Enterococcus faecium DO]
 gi|260560488|ref|ZP_05832662.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261209005|ref|ZP_05923410.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565183|ref|ZP_06445635.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293553266|ref|ZP_06673903.1| transport protein [Enterococcus faecium E1039]
 gi|293563307|ref|ZP_06677757.1| transport protein [Enterococcus faecium E1162]
 gi|293569303|ref|ZP_06680601.1| transport protein [Enterococcus faecium E1071]
 gi|293570983|ref|ZP_06682026.1| transport protein [Enterococcus faecium E980]
 gi|294614981|ref|ZP_06694870.1| transport protein [Enterococcus faecium E1636]
 gi|294619071|ref|ZP_06698566.1| transport protein [Enterococcus faecium E1679]
 gi|294621470|ref|ZP_06700639.1| transport protein [Enterococcus faecium U0317]
 gi|68194478|gb|EAN08977.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257814442|gb|EEV43200.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257818673|gb|EEV46001.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257821111|gb|EEV48245.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257827762|gb|EEV54388.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257829980|gb|EEV56587.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073490|gb|EEW61818.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260077044|gb|EEW64766.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289163004|gb|EFD10852.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291588009|gb|EFF19859.1| transport protein [Enterococcus faecium E1071]
 gi|291592112|gb|EFF23732.1| transport protein [Enterococcus faecium E1636]
 gi|291594732|gb|EFF26114.1| transport protein [Enterococcus faecium E1679]
 gi|291598964|gb|EFF30012.1| transport protein [Enterococcus faecium U0317]
 gi|291602676|gb|EFF32891.1| transport protein [Enterococcus faecium E1039]
 gi|291604759|gb|EFF34243.1| transport protein [Enterococcus faecium E1162]
 gi|291608909|gb|EFF38188.1| transport protein [Enterococcus faecium E980]
          Length = 372

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 114/330 (34%), Gaps = 7/330 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPIVKLLM-KAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 99  VQQISSLASNMPDFIKQVESWLKEVAELPLFKEVD------INKYFEQLDISYGTIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 153 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 213 QLNKTLANYISGQAIECLFVGTFTFLGYMVIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + +  +   A    +   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AFLVTVFNDPVKALLCCVVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LG+F+G    A+   I    I  +KE+K+ 
Sbjct: 333 LGIFLGVPFYAICKTIISYIIKIVKEDKQN 362


>gi|169632288|ref|YP_001706024.1| hypothetical protein ABSDF0345 [Acinetobacter baumannii SDF]
 gi|169794531|ref|YP_001712324.1| hypothetical protein ABAYE0342 [Acinetobacter baumannii AYE]
 gi|184159661|ref|YP_001848000.1| permease [Acinetobacter baumannii ACICU]
 gi|213158897|ref|YP_002320895.1| hypothetical protein AB57_3597 [Acinetobacter baumannii AB0057]
 gi|215482119|ref|YP_002324301.1| hypothetical protein ABBFA_000368 [Acinetobacter baumannii
           AB307-0294]
 gi|239501916|ref|ZP_04661226.1| hypothetical protein AbauAB_06345 [Acinetobacter baumannii AB900]
 gi|260556965|ref|ZP_05829182.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|294837967|ref|ZP_06782650.1| hypothetical protein A60131_08510 [Acinetobacter sp. 6013113]
 gi|294843277|ref|ZP_06787960.1| hypothetical protein A6014_15504 [Acinetobacter sp. 6014059]
 gi|294858709|ref|ZP_06796478.1| hypothetical protein A6013_08961 [Acinetobacter sp. 6013150]
 gi|301344848|ref|ZP_07225589.1| hypothetical protein AbauAB0_01365 [Acinetobacter baumannii AB056]
 gi|301513299|ref|ZP_07238536.1| hypothetical protein AbauAB05_17001 [Acinetobacter baumannii AB058]
 gi|301597602|ref|ZP_07242610.1| hypothetical protein AbauAB059_17343 [Acinetobacter baumannii
           AB059]
 gi|169147458|emb|CAM85319.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|169151080|emb|CAO99739.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii]
 gi|183211255|gb|ACC58653.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|213058057|gb|ACJ42959.1| hypothetical protein AB57_3597 [Acinetobacter baumannii AB0057]
 gi|213986092|gb|ACJ56391.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260409571|gb|EEX02872.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|322509572|gb|ADX05026.1| permease [Acinetobacter baumannii 1656-2]
 gi|323519592|gb|ADX93973.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 372

 Score =  150 bits (378), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 165/353 (46%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-FLAVIA 66
            + ++  +   +I +    LK F  PVL A II + +WPIY        E+     A + 
Sbjct: 9   QRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQHFFGENRNNLNATVM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
              V+ +  VP     +    E + L   +      G + VP ++ ++P           
Sbjct: 69  ISLVILIVGVPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRNLPFIGKEISRTLN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   +  I +      +       +            + + F I++LFFFYRDG +I 
Sbjct: 129 EINTDPNSTIQNIAAWVQSH----LSYGRVLLNEISKNIVKLCFAILSLFFFYRDGHTIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 TQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T ++A+IP G P+S+  V ++L  +G    A  + LWG + +   D  +RP ++ G  
Sbjct: 245 IATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVILWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    + +    +
Sbjct: 305 QIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWREWLHETIDPEPMPKT 357


>gi|330718619|ref|ZP_08313219.1| permease [Leuconostoc fallax KCTC 3537]
          Length = 402

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 124/363 (34%), Gaps = 16/363 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFF-----------APVLSALIIGFTSWPIYSSFISKKEE 57
            G++  +++ +I+  +Y ++              AP++ A ++ +   P+ +   +  + 
Sbjct: 22  NGLIMALLVLLIIFMIYQIRFIIEPMRALFTAVGAPIIIAGVLYYLLIPVVNWLNTHTKM 81

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
              F   +  V+V+ +  + +         ++  LV       Q+   V           
Sbjct: 82  PKKFSVGLVLVAVLAILALIVTIAVTIISDQVSGLVDNWPNYWQNSQRVINDTFATSEFQ 141

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              E  +   S               +G+  I + AS    + +    S   +     + 
Sbjct: 142 TVREWLSNTNSDINQTVADWSRKYLQSGVSGIGQIASTLTTVGVTLVASPFILF----YM 197

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  +S  +            + + + V K +     G   +A+   ++    Y + G
Sbjct: 198 LLDGNKLSSFIADKLPSKAQTSLQSVLQEVSKQVAQYIRGQLGVALAVIIMFSIGYTIIG 257

Query: 238 VPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P  + L  +  +  MIP    I     + I  L+ G         +   IE  I    +
Sbjct: 258 LPYGILLAFMAGLFNMIPYVGSILAQVPIFIVALVAGGPKLVLFALIVLVIEQPIEGHVI 317

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P ++G  +K+  +     L+ G    G+LG+ +     A++ V+        + N +  
Sbjct: 318 APKILGSALKIHPVTVIVVLLTGGHIFGVLGIILSVPTYAVVKVLVTHIYEWWRTNSDLF 377

Query: 357 SSN 359
           + +
Sbjct: 378 AED 380


>gi|153009902|ref|YP_001371117.1| hypothetical protein Oant_2575 [Ochrobactrum anthropi ATCC 49188]
 gi|151561790|gb|ABS15288.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 415

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 38/325 (11%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q +     + + ++ L        P ++ + + +   P+      +   S     ++  
Sbjct: 46  RQAMFWVGTVAVFVLFLIVFSSVLLPFVAGMALAYFLDPVADRLE-RFGLSRLTATIVIL 104

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  +   +V L+ +      ++ + +SK+         +              + +    
Sbjct: 105 LIFLMALVVGLMIIVPILATQLADFISKIPDYITQLQSLLAN-----EDSQWLKKYIGID 159

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S      + S        +  + +     G   +D     +   +  F+   D   +   
Sbjct: 160 SSVIQQNLSSLLQQGAGFMSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVSS 219

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+  +   +     G   + +  G        L G+   + +G  
Sbjct: 220 IDSWVPRRQLHTVRRIAAEMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 279

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  F+    L+P LVG  
Sbjct: 280 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMICAVAGVFFLGQFVEGNILQPKLVGSS 339

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 340 VGLHPVWLMFALFAFGSLFGFTGML 364


>gi|193078525|gb|ABO13539.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
          Length = 372

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 88/353 (24%), Positives = 165/353 (46%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-FLAVIA 66
            + ++  +   +I +    LK F  PVL A II + +WPIY        E+     A + 
Sbjct: 9   QRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQHFFGENRNNLNATVM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
              V+ +  VP     +    E + L   +      G + VP ++ ++P           
Sbjct: 69  ISLVILIVGVPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRNLPFIGKEISRTLN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   +  I +      +       +            + + F I++LFFFYRDG +I 
Sbjct: 129 EINTDPNSTIQNIAAWLQSH----LSYGRVLLNEISKNIVKLCFAILSLFFFYRDGHTIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 TQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T ++A+IP G P+S+  V ++L  +G    A  + LWG + +   D  +RP ++ G  
Sbjct: 245 IATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIGVILWGVLIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    + +    +
Sbjct: 305 QIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWREWLHETIDPEPMPKT 357


>gi|221067315|ref|ZP_03543420.1| protein of unknown function UPF0118 [Comamonas testosteroni KF-1]
 gi|220712338|gb|EED67706.1| protein of unknown function UPF0118 [Comamonas testosteroni KF-1]
          Length = 391

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/352 (18%), Positives = 137/352 (38%), Gaps = 3/352 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +++ +       L+ +   +   ++      P++   + +     T  A+   +
Sbjct: 8   KRAFILLLIAVTAGFGLVLEEYAVAIFWGVVFAIVFAPLHRKLLMRMPNRPTLAALATLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + I+PL  +    + E   +  +V   N         + +     W +    K   
Sbjct: 68  ISLVMVILPLSLIGLSLIKETSAIYDQVSSGNLSAGSYVEQIFNALPS-WLTPWMEKLHL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     + +           A   G   L + +    M+  +FF  RDG  +  ++
Sbjct: 127 GTLEEIQAKLSNIALQASKLAATKAVGLGQNTLGFVVGFGVMLYLIFFLLRDGKELVARI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +    L P + ++++     VIR+T  G   +A  +G + G  +W+ G+   V   V+ 
Sbjct: 187 WAATP-LAPEHKRELATKFITVIRATVKGNLAVAAAQGALGGLIFWILGIQGAVLWAVVM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +  V+IY L  G I     L  +G + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAVGAGLVWGPVAIYFLATGAITKGLILAAYGVLVIGLVDNVLRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           P        +GG+   GL G  +GP + AL    W+       + +E+++  
Sbjct: 306 PDYVVLISTLGGMALFGLSGFVLGPAIAALFMAAWELFATMQLQVEEQLNRE 357


>gi|121587957|ref|ZP_01677711.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121728275|ref|ZP_01681307.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|147673733|ref|YP_001216117.1| putative lipoprotein [Vibrio cholerae O395]
 gi|153801764|ref|ZP_01956350.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|153818917|ref|ZP_01971584.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|153822992|ref|ZP_01975659.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|153825679|ref|ZP_01978346.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|227080805|ref|YP_002809356.1| hypothetical protein VCM66_0582 [Vibrio cholerae M66-2]
 gi|229505753|ref|ZP_04395263.1| hypothetical protein VCF_000964 [Vibrio cholerae BX 330286]
 gi|229509213|ref|ZP_04398698.1| hypothetical protein VCE_000613 [Vibrio cholerae B33]
 gi|229519577|ref|ZP_04409020.1| hypothetical protein VCC_003609 [Vibrio cholerae RC9]
 gi|229520915|ref|ZP_04410337.1| hypothetical protein VIF_001439 [Vibrio cholerae TM 11079-80]
 gi|229608864|ref|YP_002879512.1| hypothetical protein VCD_003786 [Vibrio cholerae MJ-1236]
 gi|254291239|ref|ZP_04962034.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|254850857|ref|ZP_05240207.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255744158|ref|ZP_05418111.1| predicted permease [Vibrio cholera CIRS 101]
 gi|262155732|ref|ZP_06028856.1| predicted permease [Vibrio cholerae INDRE 91/1]
 gi|262169926|ref|ZP_06037616.1| predicted permease [Vibrio cholerae RC27]
 gi|298500741|ref|ZP_07010544.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|121547804|gb|EAX57892.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
 gi|121629469|gb|EAX61896.1| conserved hypothetical protein [Vibrio cholerae V52]
 gi|124122729|gb|EAY41472.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
 gi|126510534|gb|EAZ73128.1| lipoprotein, putative [Vibrio cholerae NCTC 8457]
 gi|126519499|gb|EAZ76722.1| lipoprotein, putative [Vibrio cholerae B33]
 gi|146315616|gb|ABQ20155.1| putative lipoprotein [Vibrio cholerae O395]
 gi|149740616|gb|EDM54725.1| lipoprotein, putative [Vibrio cholerae MZO-2]
 gi|150422803|gb|EDN14755.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
 gi|227008693|gb|ACP04905.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227012449|gb|ACP08659.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|229342148|gb|EEO07144.1| hypothetical protein VIF_001439 [Vibrio cholerae TM 11079-80]
 gi|229344266|gb|EEO09241.1| hypothetical protein VCC_003609 [Vibrio cholerae RC9]
 gi|229353785|gb|EEO18721.1| hypothetical protein VCE_000613 [Vibrio cholerae B33]
 gi|229357976|gb|EEO22893.1| hypothetical protein VCF_000964 [Vibrio cholerae BX 330286]
 gi|229371519|gb|ACQ61942.1| hypothetical protein VCD_003786 [Vibrio cholerae MJ-1236]
 gi|254846562|gb|EET24976.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|255738098|gb|EET93490.1| predicted permease [Vibrio cholera CIRS 101]
 gi|262021660|gb|EEY40371.1| predicted permease [Vibrio cholerae RC27]
 gi|262030443|gb|EEY49083.1| predicted permease [Vibrio cholerae INDRE 91/1]
 gi|297540522|gb|EFH76580.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 361

 Score =  149 bits (377), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|15640644|ref|NP_230273.1| hypothetical protein VC0624 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|9655058|gb|AAF93790.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
           str. N16961]
          Length = 361

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 141/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLL +F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLLIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|297580751|ref|ZP_06942677.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297535167|gb|EFH74002.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 361

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIIQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|291556593|emb|CBL33710.1| Predicted permease [Eubacterium siraeum V10Sc8a]
          Length = 468

 Score =  149 bits (377), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 54/371 (14%), Positives = 102/371 (27%), Gaps = 35/371 (9%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFIS------------------------------ 53
           ++       PVL   +I +   PI +                                  
Sbjct: 40  IFSFLSILTPVLYGFVIAYILCPIATFIEKPCLRRLFYTIQDKKREKFEREHPGEEPPPK 99

Query: 54  ---KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
               ++ +      I  +  + +    +  L    +  +  LV+ +              
Sbjct: 100 TFPVRKVARVMSVAITMILALLILTGIIWVLLPQLIDTITMLVNNMPEYVTQISDWVSQT 159

Query: 111 SDIPGGM--WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
                 +  +  +          +           N  + I         +F++  L  +
Sbjct: 160 LRNYPEVEAYVLQFTGGISDMLNNWLSTELLPQMNNIWNLISSNVMNIISVFMNLLLGFV 219

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
             I  L           + L  L +          +R V K       G  + +   G+V
Sbjct: 220 IAIYFLNSKELFAAQFKKILYCLFKPKVATKIINSTREVNKSFGQFITGKILDSFIIGMV 279

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 +  +P  V  GV+  I  +IP   P       + LL+  +        +   I 
Sbjct: 280 YVLLMSIFNMPYAVLCGVVMGIFCIIPYFGPFIGFIPCMLLLVLVDPIQCIYFTIMVVII 339

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    L P ++G    L      FG++ G    G +GL IG  L A++    K  +  
Sbjct: 340 QNIDGNVLAPKIIGDSTGLSSFWVIFGMLVGQGLFGFVGLIIGIPLFAVVYSFTKNRVKK 399

Query: 349 IKENKEKISSN 359
             E K   S +
Sbjct: 400 RLEKKALPSDS 410


>gi|262191799|ref|ZP_06049971.1| hypothetical protein VIH_002174 [Vibrio cholerae CT 5369-93]
 gi|262032333|gb|EEY50899.1| hypothetical protein VIH_002174 [Vibrio cholerae CT 5369-93]
          Length = 361

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVTLLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|153829135|ref|ZP_01981802.1| putative lipoprotein [Vibrio cholerae 623-39]
 gi|148875393|gb|EDL73528.1| putative lipoprotein [Vibrio cholerae 623-39]
          Length = 361

 Score =  149 bits (376), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|33594470|ref|NP_882114.1| hypothetical protein BP3604 [Bordetella pertussis Tohama I]
 gi|33595146|ref|NP_882789.1| hypothetical protein BPP0437 [Bordetella parapertussis 12822]
 gi|33599428|ref|NP_886988.1| hypothetical protein BB0439 [Bordetella bronchiseptica RB50]
 gi|33564545|emb|CAE43862.1| putative membrane protein [Bordetella pertussis Tohama I]
 gi|33565223|emb|CAE36021.1| putative membrane protein [Bordetella parapertussis]
 gi|33567024|emb|CAE30937.1| putative membrane protein [Bordetella bronchiseptica RB50]
          Length = 367

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 155/355 (43%), Positives = 222/355 (62%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  +WP++   +      +T
Sbjct: 1   MHQPVLPAFLIARWLLLLVLLAGIYFLSGFLVPALAALIIGLATWPLFQRLVRAFGGRTT 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +A V+V+ + +VPL     Y + E     +  + AN+HG+ VP W+  +P      
Sbjct: 61  LAATLALVAVIVILVVPLSLALSYAIKEAGNFFAWALAANKHGVDVPAWIMSLPMVGERL 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + +               +    +  I R             L+++FM+I LFF Y+D
Sbjct: 121 AEYWRTYLGEPHALGALVEIVSGEHLGNIYRMVLSATGNAFQLLLTVLFMLITLFFVYKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +  QLD LGE + PA W++ SR+VP  + ST  GM +IA+GEG+VLG AYW+AGVPS
Sbjct: 181 GTRMVGQLDILGERVLPARWQRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWVAGVPS 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGVIT  MA++PGGAP+SFT VS+YL+  G++     LF+WG +ELFIVDKTLRP L
Sbjct: 241 PVLLGVITGFMALVPGGAPLSFTLVSLYLVGSGHLVAGIGLFVWGTVELFIVDKTLRPRL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           VGGP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  IW+E +  ++  +++
Sbjct: 301 VGGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAIWREWVRNVERERDQ 355


>gi|229512886|ref|ZP_04402353.1| hypothetical protein VCB_000528 [Vibrio cholerae TMA 21]
 gi|229350135|gb|EEO15088.1| hypothetical protein VCB_000528 [Vibrio cholerae TMA 21]
          Length = 361

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIESVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|307332296|ref|ZP_07611372.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306882048|gb|EFN13158.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 547

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 94/324 (29%), Gaps = 18/324 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +   R +++   +  L  +             AL+I     P  +    ++         
Sbjct: 171 EAAWRLLVLGGTVWVLMRVISSVELVVLSFTVALLITALLEPTVTRL-RRRGVPRGLATA 229

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  ++   +  + + F+ +  M  + E+  +V                     W      
Sbjct: 230 LTFIAGFVVMGLVVWFVVWQVMENVDEVSGEVQAGIDDLRR------------WLLHSPF 277

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  +    S         + I         + ++    ++  + +  F   DG  I
Sbjct: 278 HVTEKQINHIAKSLREAVGANTEQITSAGLEGVTVVVEVLTGLLLTMFSTLFLLYDGPKI 337

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 L                   + +   G  I+A+ + + +G   +   VP  V L
Sbjct: 338 WSWTLKLVPAPAREGVAGAGPRAWATLTAYVRGTVIVALIDAIFIGVGLFFLHVPMAVPL 397

Query: 245 GVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V   + A IP    +       +  L+   +F    + +       I    L+PF++G 
Sbjct: 398 AVFIFLFAFIPLVGAVVSGALAVVVALVTQGVFTGAMVLIVVLAVQQIEGHILQPFILGR 457

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLG 327
            +++  L     +  G    G+ G
Sbjct: 458 AVRVHPLAVVLSVAAGSLIGGIGG 481


>gi|291454538|ref|ZP_06593928.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291357487|gb|EFE84389.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 406

 Score =  149 bits (376), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 103/356 (28%), Gaps = 18/356 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +         + + L      +L A  +     P  S   ++     
Sbjct: 2   PRWLPRAMVMALALVAAFQLGTWAFHQLTSLLINILIAFFLALAVEPAVSWMAAR-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                   + ++      +  L      ++ ++V          I               
Sbjct: 61  GLATAAVFLGLLVASAGFVTLLGSMLAGQIVDMVEDFPKYLDSVISWIN----------- 109

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + +   LS  +    L  +      +              L     ++ +++  F+F  
Sbjct: 110 -QTFHTDLSRLEVQDSLVHSDWLRRYVQNSATGVLDISAQLLGGLFQLLTLVLFAFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G          GVP
Sbjct: 169 DGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLQWLGVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    + + A  +  +  +     +  L+P
Sbjct: 229 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYMLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + +     F  ++ G   +G +G  I    +A +       +     + E
Sbjct: 289 KLTAKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVRRYDVHDE 344


>gi|163759172|ref|ZP_02166258.1| permease [Hoeflea phototrophica DFL-43]
 gi|162283576|gb|EDQ33861.1| permease [Hoeflea phototrophica DFL-43]
          Length = 386

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 123/354 (34%), Gaps = 10/354 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  Q     + + + +  L   +    P ++ + + +   P+   F  +   S    
Sbjct: 7   QRALRRQIFFWLLALGLFIAFLMVFRSILLPFIAGMALAYFLDPVADWFERR-GLSRLMA 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   + + LF + L+ +    + +  +L  ++         +    + I    ++ +L
Sbjct: 66  TIVILCAFVALFAISLVVIIPVLVTQAADLGGRIPGYITQLQELLSSETTIMPAWFSDQL 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                S    LK           I  I +     GM  LD     +   +  F+   D  
Sbjct: 126 SQVKESFAALLKE------GAGLIGTIFQQIWNSGMALLDIAALFVVTPVVAFYLLLDWD 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++D           + ++R + + I     G   + +  GL+      + G+   +
Sbjct: 180 RMIERVDGWIPRDHVETVRDLARQINQAIAGFVRGQGSVCLILGLIYAVGLSIVGLNFGL 239

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC---LFLWGAIELFIVDKTLRPF 299
            +G+   I++ IP    +    +++ + I     +      +     +  F     L+P 
Sbjct: 240 LIGLFAGIISFIPYVGSMVGLVLALVVAIVQFWPDFIMIGAVIGVFVVGQFFEGNILQPR 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG  + L  +   F L       G +G+ I     A + V+ + ++    ++ 
Sbjct: 300 LVGSSVGLHPVWLMFALFAFGALFGFVGMLIAVPAAASVGVLVRFALSRYLDSD 353


>gi|291550167|emb|CBL26429.1| Predicted permease [Ruminococcus torques L2-14]
          Length = 467

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 109/364 (29%), Gaps = 17/364 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------- 57
              + +  I            P++  L I +   PI      +                 
Sbjct: 61  FALLRLGQISSVFKQFLTVAKPIIYGLAIAYLLNPIVKWIDRRMIPLLEKHCPKLKKKKQ 120

Query: 58  -SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS--DIP 114
            S      ++ + ++ L I  L  +       +++++  V       I     +   D  
Sbjct: 121 ISRGVGIFVSVILMLALIITLLNMMIPELYGSIRDMIFTVPSQMNRFIHEFSKMHSSDST 180

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            G   + +  +     Q+             +  +     +      ++ + II  I  L
Sbjct: 181 VGKMLASIVEEASDFVQNWMKTDLMEKVNLWMTQLTVGMIQMVREVFNFIIGIIVSIYVL 240

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F   +      + + ++          +I     ++     +G  I ++  G++      
Sbjct: 241 FSKEKFQKQTKKLIYAVFRPGQANMILQIGGKSNEIFGGFIIGKIIDSLIIGVICFIGLS 300

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P  + + VI  +  +IP   P      S  L++  +        ++          
Sbjct: 301 ILNMPYTMLVSVIVGVTNVIPFFGPYIGAIPSAILILLADPLKGLYFIIFVIALQQFDGN 360

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L P ++G    L      F ++      G+ G+  G    A+I  I    + +I + KE
Sbjct: 361 VLGPKILGNSTGLSSFWVVFSILIAGGLFGIPGMLFGVPTFAVIYYIVNMLVNSILKKKE 420

Query: 355 KISS 358
             + 
Sbjct: 421 LPTD 424


>gi|329894051|ref|ZP_08270036.1| putative permease PerM family [gamma proteobacterium IMCC3088]
 gi|328923223|gb|EGG30543.1| putative permease PerM family [gamma proteobacterium IMCC3088]
          Length = 378

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 138/339 (40%), Gaps = 5/339 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
               ++ + +   Y +  FF+ +L A II     P+++  + +        A++  ++ +
Sbjct: 19  FIAALIAVSIAFTYLMLPFFSVILWACIIALLFHPLHAKLLDRYPRHENIAALVTLLACV 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + + P LFL    + +   +  ++       +    W+  I       +   + L    
Sbjct: 79  LIAVTPALFLASSFIKQGTAIYQQLESGQ---LKPALWIDQIRQAFPVIDELLRTLGFDV 135

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +        L       +   A   G   L + +S+  M+   FF  RDG  +   L   
Sbjct: 136 AEVKQQLGSLSVEAGKVMASNALLIGQNTLGWLVSLGLMLYLTFFMLRDGARLIPILIRA 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     + + +   +V R+T  G  ++A+ +G + G  +WL  +P  V  GV+  ++
Sbjct: 196 LP-LGDERERLLMQKFAEVTRATIKGSLVVAMAQGSLGGLIFWLLDLPGPVLWGVVMTVL 254

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP     + +  V +YLL  GN  +   L  +GAI + +VD  LRP LVG   KLP  
Sbjct: 255 SLIPVVGASLIWLPVGLYLLATGNTSDGIILIAFGAIVIGLVDNILRPILVGRDTKLPDY 314

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                 +GG    G+ G  +GP++  L    W+      
Sbjct: 315 LVLLSTLGGFTMFGMTGFVLGPLIAVLFITFWEIFSREF 353


>gi|297202806|ref|ZP_06920203.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|297148203|gb|EFH28885.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 425

 Score =  148 bits (375), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 104/359 (28%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +  +      + + L G    +L A  +     P  S   ++   
Sbjct: 41  RMPRWLPRAMVLALALIAVFQLGSWAFHQLIGLLTNILIAFFLALAIEPAVSKMAAR-GM 99

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +    V+ +    +  L      ++ ++V          I             
Sbjct: 100 RRGLATFLVFFGVLIVTAGFVTLLGSMLAGQIIKIVEDFPNYLDSVIAWINGH------- 152

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +   L      + L  +    N +              L     ++ + +  F+F
Sbjct: 153 -----FHTELKRVDVQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLFQLLTIALFSFYF 207

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + + S+      A   +   I             ++A+  G+          
Sbjct: 208 AADGPRLRRTICSVLPPARQAEVLRAWEIAVDKTGGYIYSRGLMALASGVAHFVLLQALD 267

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP    L V   +++  IP        A+ + +    + + A  + ++  +     +  L
Sbjct: 268 VPYAPVLAVWVGLVSQFIPTIGTYLAGALPMLVAFTVDPWYALWVLVFVVVYQQFENYML 327

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 328 QPKLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYAVTDDP 386


>gi|153814461|ref|ZP_01967129.1| hypothetical protein RUMTOR_00674 [Ruminococcus torques ATCC 27756]
 gi|317500174|ref|ZP_07958407.1| hypothetical protein HMPREF1026_00349 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087599|ref|ZP_08336527.1| hypothetical protein HMPREF1025_00110 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848857|gb|EDK25775.1| hypothetical protein RUMTOR_00674 [Ruminococcus torques ATCC 27756]
 gi|316898463|gb|EFV20501.1| hypothetical protein HMPREF1026_00349 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330399778|gb|EGG79438.1| hypothetical protein HMPREF1025_00110 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 457

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 114/366 (31%), Gaps = 19/366 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA--PVLSALIIGFTSWPIYSSFISKKEE---------- 57
            +  ++++    +S    K F    P++  L I +   PI  +   K             
Sbjct: 61  ILFYFLLLRAGHISGVIRKIFLVSKPIVYGLAIAYLLNPIVKAVDRKLLPFLEKKFPNFK 120

Query: 58  -----SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS- 111
                S +    I+ V +  +       +       +++++  V       I     ++ 
Sbjct: 121 QAKSVSRSVGICISIVILATIIFTLFNMMIPELYKSIRDMIMNVPSQMNRFIRELSEMNT 180

Query: 112 -DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            +   G     +  +  +  Q+           + +  +      F    ++  + +I  
Sbjct: 181 ENSTIGNIVESVMKEATTFVQNWMRTDLLGRINDFMSGLTVGVLNFMREIMNILIGLIVS 240

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  LF   +      +   ++ +         ++    ++     +G  I +   G++  
Sbjct: 241 VYVLFSKEKFSKQSKKITYAIFKPSNANMILHLTIKSNEIFGGFIIGKIIDSAIIGVLCF 300

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
           +   +  +P  + + VI  +  +IP   P      S  L++           ++      
Sbjct: 301 AGLSILNMPYAMLVSVIVGVTNVIPFFGPYIGAIPSAILILLAEPKMGIYFIIFIIALQQ 360

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                L P ++G    L      F ++ G    G+ G+ +G    A++  I    +    
Sbjct: 361 FDGNVLGPKILGDSTGLSAFWVVFSILIGGGLFGVPGMILGVPTFAVVYYIVGMLVNNKL 420

Query: 351 ENKEKI 356
           E K+  
Sbjct: 421 EKKKLP 426


>gi|183602050|ref|ZP_02963419.1| hypothetical integral membrane protein in upfo118 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|241190536|ref|YP_002967930.1| hypothetical protein Balac_0492 [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195942|ref|YP_002969497.1| hypothetical protein Balat_0492 [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218935|gb|EDT89577.1| hypothetical integral membrane protein in upfo118 [Bifidobacterium
           animalis subsp. lactis HN019]
 gi|240248928|gb|ACS45868.1| Hypothetical permease [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250496|gb|ACS47435.1| Hypothetical permease [Bifidobacterium animalis subsp. lactis DSM
           10140]
 gi|295793523|gb|ADG33058.1| Hypothetical permease [Bifidobacterium animalis subsp. lactis V9]
          Length = 529

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 103/347 (29%), Gaps = 19/347 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   +I   +   ++     +      ++ AL +     P+    I          +V
Sbjct: 30  RALFYAVIAVYLGWFVFTSYGKITYIVFDIVIALFLALAVEPLVIRLIRH-GWKRGVASV 88

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                ++ + IV +       + +M  +V  +                            
Sbjct: 89  TCLAGLLVIVIVLMALFGNMFVQQMISMVKGLPDLYNQFAAFVD------------AKTH 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L     L       +K + +      A    M  L   L++   ++  F+    G  +
Sbjct: 137 FKLPEMNDLGGEIMKNIKGSWVTDFAGQAVSTTMGVLGQILNLTTALMVAFYISIAGPKL 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +           +  +  +V   I       +I+A      +     +  VP  + L
Sbjct: 197 RRSVCQWIAPRSQRRFLMVWTVVQDQISGFLFSRSILAAINAACMSVFLMIIKVPYWLPL 256

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   I++  +P     I      ++   +  I  A  + ++  +   I +  L P +  
Sbjct: 257 ALFCGIVSQFVPTLGTYIGGALPVLFAWGERGIGYAIGVVVFITVYQQIENLVLSPKISE 316

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + L     F  ++      G  G F+   + A I V+ K ++   
Sbjct: 317 RTMDLNPCIAFLTVLFFGSIFGAAGAFLALPITASIQVLLKVAMKRY 363


>gi|114049038|ref|YP_739588.1| hypothetical protein Shewmr7_3551 [Shewanella sp. MR-7]
 gi|113890480|gb|ABI44531.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 364

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 161/349 (46%), Positives = 228/349 (65%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLMAKCGGRSALSAT 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA V ++   I PL+F+F Y + E++  V  +V ANQHG PVP W+ D+P       L  
Sbjct: 64  IALVLIIVGLITPLIFVFSYALQEIRAWVEWLVYANQHGAPVPLWIKDLPWIGEWLTLQW 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG S+
Sbjct: 124 QQFIGEPHELGKIVSAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGESV 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++QLD +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA 
Sbjct: 184 AKQLDIVGERILPARWHRFSRVVPTTVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAF 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGP
Sbjct: 244 GVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGP 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           IKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +      +
Sbjct: 304 IKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLIAIWREWLRDDPSAE 352


>gi|229530430|ref|ZP_04419818.1| hypothetical protein VCG_003550 [Vibrio cholerae 12129(1)]
 gi|229332203|gb|EEN97691.1| hypothetical protein VCG_003550 [Vibrio cholerae 12129(1)]
 gi|327483427|gb|AEA77834.1| Predicted permease [Vibrio cholerae LMA3894-4]
          Length = 361

 Score =  148 bits (375), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 143/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 TIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|260906829|ref|ZP_05915151.1| putative permease [Brevibacterium linens BL2]
          Length = 452

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 116/341 (34%), Gaps = 10/341 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + + L  L  +     PVL AL++     P  +  + K        A+IA +
Sbjct: 72  RSLVVLAAVGVALWLLAKVSSVVLPVLIALLLTALLAPFTNWMVRK-GLPRVAAALIAFI 130

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +       +       M +LV +V+           WL+  P G+ A       +S
Sbjct: 131 GFIVVVSGLFTLVGQQIYSGMPDLVDQVITGFSGIS---NWLASRPFGLDA-----STIS 182

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  + +      N    +   A +       +       + A FFF  DG  I + +
Sbjct: 183 GYINNSLDAANNFFQNNSSQLLGGAVQATSSVGTFLTGAAVCLFATFFFLYDGEKIFRWV 242

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L            S      +        ++A  + + +G      G+P  + + V+ 
Sbjct: 243 MRLLPLPAQPIATGASERGWTTLVQYVRVQVLVAGVDAIGIGIGAAFLGIPLVIPMTVLV 302

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + +P    I+      +  L+     +A  +         I  + L+PFL+G  + +
Sbjct: 303 FLASFVPVVGAIASGVVAVLVALVSNGPVSALIMLGVVLAVQQIESQILQPFLMGKAVSV 362

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             L     +  G    G++G      L+A++  +    + A
Sbjct: 363 HPLAVILAVTAGGFLFGIVGALFAVPLVAVLNTVVTYIVRA 403


>gi|258623083|ref|ZP_05718096.1| putative lipoprotein [Vibrio mimicus VM573]
 gi|258584696|gb|EEW09432.1| putative lipoprotein [Vibrio mimicus VM573]
          Length = 361

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 144/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +     HG I        I  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWIVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + ++   M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDKS 361


>gi|209964849|ref|YP_002297764.1| permease protein, putative [Rhodospirillum centenum SW]
 gi|209958315|gb|ACI98951.1| permease protein, putative [Rhodospirillum centenum SW]
          Length = 387

 Score =  148 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 118/348 (33%), Gaps = 9/348 (2%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M + + +  WM+ + + +  ++ L     P ++ + + +   P+      +        A
Sbjct: 1   MNDRRPLRFWMVGLGVFITLIWLLHEMLLPFVAGMAVAYLLDPLADRME-RTGLPRWLAA 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  ++ M    V  + LF     ++ ++                    +P         
Sbjct: 60  TLVLLAFMLGATVAAVLLFPLMQAQIVQIAESAPGWIAWVKE-----EFLPDLEAIVARL 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +          +        +    + R     G+  +D    ++   +  F+  RD   
Sbjct: 115 SPEDVERLRQAVGEYAGTVVSWTAALLRGLLVQGVALVDVLSVLLITPVVAFYLLRDWDR 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + +D           +   R V + +     G   + I  GL+  +A  L G+   + 
Sbjct: 175 LVRTVDGWLPRPHAPTIRGQVREVDRTLAGFVRGQATVCIALGLLYAAALSLTGLNFGLI 234

Query: 244 LGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G+I  +++ IP    +      V I +    +++    +     +   I    L P LV
Sbjct: 235 VGLIAGLLSFIPYVGSLVGFGLSVGIAVFQYDDLWRIALVAGIFVVGQTIEGYFLTPKLV 294

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G  + L  +   F L+ G    G +G+ +   + A+I V+ +  +   
Sbjct: 295 GERVGLHPVWVMFALLAGGSLFGFVGVLLAVPVAAVIGVLVRFGLRQY 342


>gi|187476842|ref|YP_784866.1| membrane protein [Bordetella avium 197N]
 gi|115421428|emb|CAJ47933.1| putative membrane protein [Bordetella avium 197N]
          Length = 369

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 158/352 (44%), Positives = 218/352 (61%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++ +     I RW+++ ++   LYFL GF  P L+ALIIG  +WP+Y   +   +  + 
Sbjct: 1   MQQPVFPVYLIARWLLLLVVAAGLYFLSGFLVPALAALIIGLATWPLYERVVRFCKGRNI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +A   V+ + +VPL     Y   E     +  + AN+HG+ VP W+S +PG     
Sbjct: 61  LAATLALCIVVLVVVVPLSMALTYAFKEASNFFAWALAANKHGVEVPFWISSLPGVGERL 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +                 +    +  I R A         + L+++FM+I LFF Y+D
Sbjct: 121 SQYWTTYLGEPHALGAMVELVSGEHLGNIYRMALSATGNVFQWLLTLLFMLITLFFVYKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S+  QLD LGE + PA WK+ SR+VP  + ST  GM +IA+GEG+VLG AYW+AGVPS
Sbjct: 181 GKSMVAQLDILGERVLPARWKRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWIAGVPS 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGVIT  MA+IPGGAP+SFT VS+YL+   ++     LF+WG +ELFIVDKTLRP L
Sbjct: 241 PVLLGVITGFMALIPGGAPLSFTLVSLYLVGSNHLVAGVGLFVWGTVELFIVDKTLRPRL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           VGGP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  IW+E +   + +
Sbjct: 301 VGGPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAIWREWVRNTERD 352


>gi|238025001|ref|YP_002909233.1| hypothetical protein bglu_2g16580 [Burkholderia glumae BGR1]
 gi|237879666|gb|ACR31998.1| Hypothetical protein bglu_2g16580 [Burkholderia glumae BGR1]
          Length = 364

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 141/350 (40%), Gaps = 3/350 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E+  + Q   ++++  + +   + L  FF  +    I+     P+     +   +     
Sbjct: 15  ESAKDHQKFFQFLLTVVTIGFCWILIPFFGAIFWGTILAILFQPVQRWLAAHFGKRRNLA 74

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++   +++ + I+PL F+    + E+  +  +V  +  +     + +           L
Sbjct: 75  ALVTLSAIVLIVILPLTFVAATLVQEIAYVYQQVKTSQPNMTLYLQQVVHALPTSLQRVL 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +  L+    ++             F+   A   G     + +S   M+  +FF  RDG 
Sbjct: 135 HSYGLADIAGIQKKLTDG-AAAISQFVATQAFSIGQNTFQFVVSFGVMLYLVFFLLRDGG 193

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   +
Sbjct: 194 EIGRRVRRALP-LDEDHKHLLLSKFTTVVRATVKGNIAVALVQGALGGVIFWILGIEGAL 252

Query: 243 ALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + A ++++P     + +   ++Y  + G I+    L ++    + +VD  LRP LV
Sbjct: 253 LWGSLMAFLSLLPAIGAGLVWAPAAVYFAVTGQIWKCVILVVFCVGVIGLVDNLLRPILV 312

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G   K+P        +GG+   G+ G  IGP++ AL    W     A + 
Sbjct: 313 GKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARADQA 362


>gi|329667697|gb|AEB93645.1| permease [Lactobacillus johnsonii DPC 6026]
          Length = 393

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 4/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++     F    F P+L A I  +   P+      K +       ++  V V+   I
Sbjct: 42  ISFVLNPFWTFFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPRIITIILLFVIVVGGLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      +   LV       +        +   P          + +S  Q+   
Sbjct: 102 WIINTLIPIIQHQTDSLVKNWPTYWKDAQKGFEKMIRDPRLNGVRGGINQAISDAQTKMF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        +  +    +   MIF+            LFF  +DG  ++  +       
Sbjct: 162 KTGQDSFNLALSNLSSAVNVITMIFMTLLT----APFVLFFMLKDGHRLNPYVTKFAPKK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +  +   +   + S   G   +A   G++    Y + G+   + L V+  I+ MIP
Sbjct: 218 LQPSFSSLLSDINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGILNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I L +  +      + +  AIE  +  + + P ++G  + +  + T   
Sbjct: 278 YFGTFIAFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G     GL G+     + A+I +I        ++
Sbjct: 338 LIGASAVAGLWGVIFAIPVYAVIKIIVTRLFNYYRK 373


>gi|254226734|ref|ZP_04920310.1| conserved hypothetical protein [Vibrio cholerae V51]
 gi|125620751|gb|EAZ49109.1| conserved hypothetical protein [Vibrio cholerae V51]
          Length = 361

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K    +   A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGIWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDRS 361


>gi|83311943|ref|YP_422207.1| permease [Magnetospirillum magneticum AMB-1]
 gi|82946784|dbj|BAE51648.1| Predicted permease [Magnetospirillum magneticum AMB-1]
          Length = 358

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 113/348 (32%), Gaps = 9/348 (2%)

Query: 5   MLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M + Q +  W+I     LV LY L+    P ++ + + +   P+      +   S T   
Sbjct: 1   MSSGQRLRFWLIGGVAFLVLLYMLRSVMLPFVAGMAVAYFLDPLADRME-RAGLSRTLAT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            I  +    +  + L  L      ++   V KV +  Q           +P         
Sbjct: 60  AIICLVFFGVMGLGLTLLAPIIQQQVVTFVQKVPVYAQSLQT-----RAMPLLEEVYRHL 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +            +           + +     G+  +     +    +  F+  RD   
Sbjct: 115 SPEDLEKLRSSAGAYAGTAVGWGLGVLKGVLSGGIAVMSILSLLFITPVVTFYLLRDWDH 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++D+          +   R + + I     G   + I   +  G    + G+   + 
Sbjct: 175 MVAKVDNWLPRHHAETIRFELREIDRTIAGFVRGQATVCIVLAIFYGVGLTITGLDLGLM 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC--LFLWGAIELFIVDKTLRPFLV 301
           +G+ T + A +P    +     S+ L +           + +   I   +    L P LV
Sbjct: 235 IGLGTGLGAFVPYVGMLIGLIASVGLALAQGGEWHLLGGVGIVFLIGNVLEGNFLTPKLV 294

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G  + L  +   F L+ G    G +G+ +     ++I V+ + ++   
Sbjct: 295 GDRVGLHPVWIIFSLLAGGALFGFVGILLAVPAASVIGVLTRFALQNY 342


>gi|284033514|ref|YP_003383445.1| hypothetical protein Kfla_5640 [Kribbella flavida DSM 17836]
 gi|283812807|gb|ADB34646.1| protein of unknown function UPF0118 [Kribbella flavida DSM 17836]
          Length = 470

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 104/337 (30%), Gaps = 16/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + ++  +L +L     PV   +++     P+ +    K        A    +
Sbjct: 118 RFLVITAAVLVLAYALRYLSEVVVPVTIGVLLTALLVPVTNGLQ-KIRVPRGPAAGGTVL 176

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L  +      + + L ++V    +    + R   ++        L     +
Sbjct: 177 LTLVVVAGLLTLVGAQIATQFENLSTQVGEGVRELRDMARINLNVSDADITDALNRLRDT 236

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I + A+  G         +   +  LFFF   G  I   L
Sbjct: 237 VM--------------SGGAIGQRAAEVGTTATHVVAGLFISLFCLFFFLYQGEQIWAWL 282

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             R     + +      I+A  + + +     + G+P   A+G++ 
Sbjct: 283 VRLFPRQAREKADSSGRKAWVSLTAFVRATIIVAAVDAIGIALGAAILGLPLVSAIGILV 342

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+      A  +         +    L+PFL+G  + +
Sbjct: 343 FVGAFVPVVGALVSGCVAVLVALVAKGPIVAVIMLAVVIGVQQLEAHVLQPFLLGRAVSV 402

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L     +  GV   G++G  +     A+I  I   
Sbjct: 403 HPLAVILAIATGVVIAGIVGALVAVPTAAVINTIVNH 439


>gi|212716396|ref|ZP_03324524.1| hypothetical protein BIFCAT_01319 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660649|gb|EEB21224.1| hypothetical protein BIFCAT_01319 [Bifidobacterium catenulatum DSM
           16992]
          Length = 512

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/348 (10%), Positives = 111/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  ++    +     ++     ++ +L I     P+    +       +F ++
Sbjct: 45  RALLYIAIAIVVFTFCWRSWGKIEYLVIDIIVSLFIALAVEPMVVPLVKH-GWKRSFASL 103

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            + + +  +  V         + ++  LV+ +    +         ++            
Sbjct: 104 FSLLMLAVILGVLFTLFGNLFVQQVIALVNGLPDLYEQMCQFVSQYANFR---------- 153

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    +L       ++T+ +      A         + ++++ +I+  ++    G  +
Sbjct: 154 --LPEINNLGNEILKNIQTSWVTDFAGTALNTVSGLFSFLINLMTVIMTTYYISAAGPKL 211

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S      I+A+      G    L  VP  + L
Sbjct: 212 RRAACQWMAPAAQRRFLFVWTVSQSQISSFLFSRAILALLNAFFTGICLMLLHVPYWLPL 271

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++      ++ A  + ++  +   I +    P +  
Sbjct: 272 ALFCGMVSQFIPMLGTYIGGALPVLFAWGSCGLWQAVVVLMFICVYQQIENLIFAPKISQ 331

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G LG F+   ++A +  I++      +
Sbjct: 332 RTMDINDAVAFLAVLAFTSLFGALGAFLALPVVASVQTIFRTYTKRYE 379


>gi|53803180|ref|YP_115110.1| hypothetical protein MCA2709 [Methylococcus capsulatus str. Bath]
 gi|53756941|gb|AAU91232.1| conserved hypothetical integral membrane protein [Methylococcus
           capsulatus str. Bath]
          Length = 362

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/330 (21%), Positives = 154/330 (46%), Gaps = 4/330 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           ++   ++ F   +  A+ + + +WP+++    + E   T  A++ T  +  + + PL++L
Sbjct: 20  LTYAVVRPFLVSIGWAVFVSYVAWPLHAWSQRRFEGRKTLSALVTTALLGSVVLAPLIWL 79

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 E+ EL+  +    +    +P ++S IP      +           L        
Sbjct: 80  AVLLQGEVSELIRSLPDWLEQKPRLPDFVSHIPYFGNELQAVVDQFEDLHGLLKRHAPEW 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  +    +          +     +  LFF +RDG  ++  +  +   +     K
Sbjct: 140 VRRLGSPVLGIMTTLVQNAAVLFM----TLFTLFFLFRDGLQLATDVRRVFTRVLGERLK 195

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                +   +++   G+ + A+ +G + G  YW+ GV + + LG+ T ++AMIP G P +
Sbjct: 196 GYFATIEATVKAVLYGIVLTALAQGFLAGLGYWIVGVKAPIVLGIATTLIAMIPFGTPFA 255

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           + +VSI+LL++G  +    L LWG + +  +D  +RP ++     +PF+   FG++GG+ 
Sbjct: 256 WGSVSIWLLLQGETWAGVSLALWGTLVISWIDNIIRPLVISSATHIPFVLVMFGVLGGLA 315

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G +GL +GPV++A+   +W+E +  ++E
Sbjct: 316 SFGFIGLVLGPVILAMALAVWREWLQQVRE 345


>gi|262163961|ref|ZP_06031700.1| predicted permease [Vibrio mimicus VM223]
 gi|262027489|gb|EEY46155.1| predicted permease [Vibrio mimicus VM223]
          Length = 361

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 144/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +     HG I        I  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWIVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + ++   M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDKS 361


>gi|119384045|ref|YP_915101.1| hypothetical protein Pden_1300 [Paracoccus denitrificans PD1222]
 gi|119373812|gb|ABL69405.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 434

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 104/325 (32%), Gaps = 14/325 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +    + +   P+      +   S T   VI T+  + L +   L L    + +  
Sbjct: 30  VTPFIMGAAVAYLFDPLADRLE-RLSLSRTAAVVILTLCGLLLVVALFLLLVPVLVRQTT 88

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+       Q                           +P +  + +     +     + 
Sbjct: 89  ALIETAPEMLQQLQQFLMT----------RFPEIFTEGNPVNTALTNMGQQISERGGQLV 138

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                  M  +   + I+ + +  F+   D  ++  +LD L         +++   +   
Sbjct: 139 STVLGSVMGVVSMVMLIVIVPVVAFYLLLDWDNMVDRLDDLLPREHAGTIRRLGHEIDAA 198

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +     G  ++ +  G        L G+P  VA+GVI A ++ IP    +     +I + 
Sbjct: 199 LSGFVRGQGMVILILGTFYSVCLGLIGLPFGVAIGVIAASLSFIPYVGVVIGGVTAIGVA 258

Query: 271 ---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                G       +     I        L+P +VGG + L  +     L       G +G
Sbjct: 259 LFSFWGEPVWIGAVIAVFVIGQVAEGNYLQPKIVGGHVGLHPVWLMLALTVFGTLFGFVG 318

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
           L I     A + V+ + ++   KE+
Sbjct: 319 LLIAVPAAAALGVLVRFAVARYKES 343


>gi|284990630|ref|YP_003409184.1| hypothetical protein Gobs_2128 [Geodermatophilus obscurus DSM
           43160]
 gi|284063875|gb|ADB74813.1| protein of unknown function UPF0118 [Geodermatophilus obscurus DSM
           43160]
          Length = 444

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 105/341 (30%), Gaps = 14/341 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   L  L     PV+  L+     WP  +  + +        A++  +    +      
Sbjct: 72  VGWVLGRLWPILLPVILGLLFATVLWPP-TRLLRRLHFPPALAALVVLLGFFAVVAGLFS 130

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           ++      +  EL        Q                W +              +    
Sbjct: 131 WIVPQVADQTGELADAATAGLQDVQE------------WVTGPPLNLGEDQIGQAVDQVI 178

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                    I  +A           L+++  ++  FFF +DG      L +        +
Sbjct: 179 DSIQGNAQNIAGYALTGVSALGSGLLNLVLALVLAFFFIKDGPRWLPWLAAQTGPKVAPH 238

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              +S      +        ++   +   +G   W+  VP  + L V+T   A IP    
Sbjct: 239 VAALSYKTWSTLSEFIRQQALVGFVDAFFIGLGLWILDVPLVLPLAVLTFFGAFIPIIGA 298

Query: 260 -ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++     +  L+      A  + +   +   +    L+P L G  + L        +  
Sbjct: 299 FVAGAFAVLIALVSNGWQTALIVLVIVLVVQQLEGNVLQPILQGRGLNLHAAVVILAVTA 358

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G+LG F+G  + ALIAV+++     +     +++ +
Sbjct: 359 GGSLYGILGTFLGVPVAALIAVVYRYVRDELDGRTPEVADD 399


>gi|260437554|ref|ZP_05791370.1| putative permease [Butyrivibrio crossotus DSM 2876]
 gi|292810186|gb|EFF69391.1| putative permease [Butyrivibrio crossotus DSM 2876]
          Length = 451

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/389 (10%), Positives = 109/389 (28%), Gaps = 35/389 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFA-----------------PVLSALIIGFTS 44
           +   L  + +   ++ FI++ +       F                    +   ++ +  
Sbjct: 17  KRFKLPNKYLTIGLVAFIVVAACILFYYLFFEDKSLFGFFKISIQSVRAFIIGAVLAYLL 76

Query: 45  WPIYSSFISKKE--------------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
            PI + F +                            +  + L  V    +    +  + 
Sbjct: 77  KPICAIFENWLGKAFAKLKNRKRAKNLQINIAIGCTAILFVALVYVLFAAIIPEVIDSVM 136

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +   V    Q+       L+     M A           + ++ L+E  +     + + 
Sbjct: 137 TISENVPGWLQNISDWLTKLAKNNANMQAQIKDFFTNFSDKVVEFLNEFLINGGKTEVVI 196

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI----SQQLDSLGEHLFPAYWKKISRI 206
              +      L     I+   ++  +   +           + S+ +  +     +  + 
Sbjct: 197 SGVTNSLKSILVLLKDILVGGVSCIYILHERKKFAVQGKMLVYSIFKGKWADKVMEEIKY 256

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             K+      G  I +I  G++      L  +P  + + V   I  +IP   P      S
Sbjct: 257 TDKMFSGFINGKIIDSIIIGILCFIVTSLCRIPYALLISVFVGITNIIPFFGPFIGAIPS 316

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +++  +        +            L P ++G    L      F +       G  
Sbjct: 317 ALIVLMISPIKCLYFIIIIVAIQQFDGNILGPKILGNSTGLSSFWVLFSITFFGGIWGFA 376

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ +G  + A++  I +  +    + + +
Sbjct: 377 GMVLGVPVFAVLYDIIRRLVKKGLDKRNR 405


>gi|307329219|ref|ZP_07608384.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306885118|gb|EFN16139.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 401

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 105/358 (29%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +         +   L G    +L A  +     P      ++   
Sbjct: 31  RMPRWLPRAMVLALALVACYRLATWAFDRLTGLLLNILIAFFLALAIEPAVDRMAAR-GM 89

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +  ++++         L      ++  +V        + +             
Sbjct: 90  RRGLATGLVFLAILIGTAGFFTLLGSMLADQIITMVQDFPQYLDNVVRWIN--------- 140

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + +  HLS  +    L  +    + +              L     ++ + +  F+F
Sbjct: 141 ---DTFHTHLSRLEIQDSLVHSDWLQSYVKNSADNVLDVSAQVLGGLFKVLTVTLFAFYF 197

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+          +   I             ++A+  G+         G
Sbjct: 198 AADGPRLRRALCSVLPPTRQVEVLRAWEIAVAKTGGYIYSRGLMALISGVAHYILLEALG 257

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP   AL V   +++  IP        A+ + +    + + A  + ++  I     +  L
Sbjct: 258 VPYAPALAVWVGLISQFIPTIGTYLAGALPMLIAFTIDPWYALWVLVFVVIYQQFENYLL 317

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +P +    + +    +F  ++ G   +G +G  I     A +       I       +
Sbjct: 318 QPRITARTVDIHPAVSFGSVIAGTALLGAVGALIAIPATATLQAFLGAYIKRYDVTDD 375


>gi|42518755|ref|NP_964685.1| hypothetical protein LJ0830 [Lactobacillus johnsonii NCC 533]
 gi|41583041|gb|AAS08651.1| hypothetical protein LJ_0830 [Lactobacillus johnsonii NCC 533]
          Length = 393

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 4/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++     F    F P+L A I  +   P+      K +       ++  V V+   I
Sbjct: 42  ISFVLNPFWTFFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPRIITIILLFVIVVGGLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      +   LV       +        +   P          + +S  Q+   
Sbjct: 102 WIINTLIPIIQHQTDSLVKNWPTYWKDAQKGFEKIIRDPRLNGVRGGINQAISDAQTKMF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        +  +    +   MIF+            LFF  +DG  ++  +       
Sbjct: 162 KTGQDSFNLALSNLSSAVNVITMIFMTLLT----APFVLFFMLKDGHRLNSYVTKFAPKK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +  +   +   + S   G   +A   G++    Y + G+   + L V+  I+ MIP
Sbjct: 218 LQPSFSSLLSDINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGILNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I L +  +      + +  AIE  +  + + P ++G  + +  + T   
Sbjct: 278 YFGTFIAFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G     GL G+     + A+I +I        ++
Sbjct: 338 LIGASAVAGLWGVIFAIPVYAVIKIIVTRLFNYYRK 373


>gi|73662707|ref|YP_301488.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495222|dbj|BAE18543.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 408

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 119/354 (33%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
            ++  +++ I +       Y  K F         P++ ++I+ +   P+ +        S
Sbjct: 39  ALIMLILIGIAIFIFDQVSYIFKPFIIVFNTIVAPIIVSIILYYLFNPLVNLMERY-NIS 97

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             +  +I  + ++ +  + +  L      + K   +               L+       
Sbjct: 98  RLWGVIILFLVIIGVIALAINLLIPVIGTQFKSFGNNFPHYVDKVNQFIDNLTR----NS 153

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   +             + ++  +        F    ++  + I      LFF  
Sbjct: 154 LISNFYGQIQEQLDALANKLPSMVSDYFNGFGSKVKNFAEAIVNVGVVIATTPFVLFFML 213

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     +    L    F   +  +   +   + S   G  I++   G++L   Y + G+
Sbjct: 214 KDSHHFKEYSTKLMPPKFRKDYHDLLDKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIGL 273

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + +  +      L +      FI    + P
Sbjct: 274 DYSLILASIAAVTSVVPYLGPTIAISPAIIIALITSPIMLLKLIIVWTAVQFIEGHFISP 333

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     +G++G+ +G    A++ V+        K  
Sbjct: 334 NIMGKTLKIHPLTIIFILLSAGNLLGVVGVILGIPAYAILKVLVSHLYSMYKRR 387


>gi|153002392|ref|YP_001368073.1| hypothetical protein Shew185_3886 [Shewanella baltica OS185]
 gi|151367010|gb|ABS10010.1| protein of unknown function UPF0118 [Shewanella baltica OS185]
          Length = 359

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 160/349 (45%), Positives = 224/349 (64%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P       L 
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG  
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEQ 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E 
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPET 351


>gi|289178270|gb|ADC85516.1| Permease [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 539

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 103/347 (29%), Gaps = 19/347 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   +I   +   ++     +      ++ AL +     P+    I          +V
Sbjct: 40  RALFYAVIAVYLGWFVFTSYGKITYIVFDIVIALFLALAVEPLVIRLIRH-GWKRGVASV 98

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                ++ + IV +       + +M  +V  +                            
Sbjct: 99  TCLAGLLVIVIVLMALFGNMFVQQMISMVKGLPDLYNQFAAFVD------------AKTH 146

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L     L       +K + +      A    M  L   L++   ++  F+    G  +
Sbjct: 147 FKLPEMNDLGGEIMKNIKGSWVTDFAGQAVSTTMGVLGQILNLTTALMVAFYISIAGPKL 206

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +           +  +  +V   I       +I+A      +     +  VP  + L
Sbjct: 207 RRSVCQWIAPRSQRRFLMVWTVVQDQISGFLFSRSILAAINAACMSVFLMIIKVPYWLPL 266

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   I++  +P     I      ++   +  I  A  + ++  +   I +  L P +  
Sbjct: 267 ALFCGIVSQFVPTLGTYIGGALPVLFAWGERGIGYAIGVVVFITVYQQIENLVLSPKISE 326

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + L     F  ++      G  G F+   + A I V+ K ++   
Sbjct: 327 RTMDLNPCIAFLTVLFFGSIFGAAGAFLALPITASIQVLLKVAMKRY 373


>gi|154247058|ref|YP_001418016.1| hypothetical protein Xaut_3129 [Xanthobacter autotrophicus Py2]
 gi|154161143|gb|ABS68359.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 418

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 116/344 (33%), Gaps = 9/344 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
                + +  ++L+ L G   P ++ +++ +   P+ +    +   + T  A++    ++
Sbjct: 64  FWVTALILTAIALWLLSGILLPFVAGIVLAYFLNPVVARLE-RIGVARTLSALVVVGIML 122

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L ++  L        +M E + ++         +    +         +          
Sbjct: 123 LLVVLFFLLALPLLSSQMFEFIQRLPAYVARLQGLLTEENREWLSGIVGDRLPDMQRSIS 182

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L     + L       +       G   +     ++   + +F+   D  ++   +D L
Sbjct: 183 DLMTQGVSHLVG-----LLSSVWSGGQALIALFALLVVTPVVVFYILCDWNNMVAYVDQL 237

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + ++R +   +     G  ++ +  G     A  +AG+   + +G+++ ++
Sbjct: 238 VPLPHRTEVRGLARAMDMAVAGFVRGQAMVCLLLGTFYAVALTMAGLNFGLLIGIVSGVI 297

Query: 252 AMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             IP    ++   +++    +    +      +         I    L P LVG  I + 
Sbjct: 298 TFIPYVGSLTGFVLAMGVAIVQFFPDWGMIGTVLAIFVTGQTIEGYVLSPKLVGDSIGVH 357

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +   F L       G +GL +   L A+  V+ +  I    ++
Sbjct: 358 PVWLMFALFAFGYLFGFVGLLLAVPLTAVTGVLVRFVITRYMQS 401


>gi|57866873|ref|YP_188508.1| hypothetical protein SERP0929 [Staphylococcus epidermidis RP62A]
 gi|242242638|ref|ZP_04797083.1| permease [Staphylococcus epidermidis W23144]
 gi|293366676|ref|ZP_06613352.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|57637531|gb|AAW54319.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
 gi|242233774|gb|EES36086.1| permease [Staphylococcus epidermidis W23144]
 gi|291318977|gb|EFE59347.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319401353|gb|EFV89564.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
 gi|329725108|gb|EGG61602.1| putative membrane protein [Staphylococcus epidermidis VCU144]
 gi|329736684|gb|EGG72950.1| putative membrane protein [Staphylococcus epidermidis VCU045]
          Length = 405

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 124/354 (35%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
            ++  +++ I++       Y  + F         P++ +L++ +   PI +     +   
Sbjct: 34  ALIALVLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYR-IP 92

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  V+++ +  + +  L      +++  +                L++      
Sbjct: 93  RLLGITIIYVAIVGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNN----NT 148

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++            + ++  D      + F     +  + I      LFF  
Sbjct: 149 ILSGYMGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFFML 208

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    F   +  +   +   + S   G  I++   GL+L   Y + G+
Sbjct: 209 KDGHKFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSIIGL 268

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P
Sbjct: 269 KYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFISP 328

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  K  
Sbjct: 329 NVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRR 382


>gi|262172300|ref|ZP_06039978.1| predicted permease [Vibrio mimicus MB-451]
 gi|261893376|gb|EEY39362.1| predicted permease [Vibrio mimicus MB-451]
          Length = 361

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 143/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +     HG I        I  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWIVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + ++   M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G    A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGETTWAIFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDKS 361


>gi|315037883|ref|YP_004031451.1| permease [Lactobacillus amylovorus GRL 1112]
 gi|325956356|ref|YP_004291768.1| permease [Lactobacillus acidophilus 30SC]
 gi|312276016|gb|ADQ58656.1| putative permease [Lactobacillus amylovorus GRL 1112]
 gi|325332921|gb|ADZ06829.1| permease [Lactobacillus acidophilus 30SC]
 gi|327183175|gb|AEA31622.1| permease [Lactobacillus amylovorus GRL 1118]
          Length = 400

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 115/360 (31%), Gaps = 15/360 (4%)

Query: 10  GIMRWMIMFIILVSL-----------YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
            ++  ++ F+I+               F      P+L A+I  +   P+      K    
Sbjct: 25  VLVNILLFFLIIWVFNKISFVLNPAWVFFSAVLPPLLLAVIQYYIMNPLVDWLERKARVP 84

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                V+  + V+ + I  +  L      ++  L+          +   +     P    
Sbjct: 85  RVLTIVVLFLFVIVVLIWIINILVPIVQNQINSLIKNWPHIWDDAVNATQNALSDPRLHP 144

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                   + + Q     S        +  I    S   M+ +            LFF  
Sbjct: 145 VRGSIKNMIDNTQKTLFKSGQSAINTTLGNISSAVSIITMVVMTLIT----APFILFFML 200

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG  +   +       +   + K+   +   + S   G   +A   G++    Y + G+
Sbjct: 201 KDGHQLRPYITKFAPEKWQPSFSKLLYDINYALASYIRGQITVAFWVGVMFAIGYSVVGL 260

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P   AL ++   + +IP           I + I  +      + +   IE  I  + L P
Sbjct: 261 PYGAALAILAGFLNLIPYFGTPIALIPVIVIAIMTSGSMLVKVLVVFVIEQTIETRVLSP 320

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            ++G  + +  + T   L+G     GL G+  G  + A++ +I        +   E  S 
Sbjct: 321 LVMGNKMAMHPVTTILLLIGASSVWGLWGVIFGIPIYAILKIIVSRVYNYYRRESEIFSE 380


>gi|227889594|ref|ZP_04007399.1| permease [Lactobacillus johnsonii ATCC 33200]
 gi|227849842|gb|EEJ59928.1| permease [Lactobacillus johnsonii ATCC 33200]
          Length = 393

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 113/336 (33%), Gaps = 4/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++     F    F P+L A I  +   P+      K +       ++  V V+   I
Sbjct: 42  ISFVLNPFWTFFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPRIITIILLFVIVVGGLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      +   LV       +        +   P          + LS  Q+   
Sbjct: 102 WIINTLIPIIQHQTDSLVKNWPTYWKDAQKGFEKMIRDPRLNGVRGGINQALSDAQTKMF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        +  +    +   MIF+            LFF  +DG  ++  +  +    
Sbjct: 162 KTGQDSFNLALSNLSSAVNVITMIFMTLLT----APFVLFFMLKDGHRLNPYVTKIAPKK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +  +   +   + S   G   +A   G++    Y + G+   + L V+  I+ MIP
Sbjct: 218 LQPSFSSLLSDINGAVASYIRGQITVAFWVGVIFAIGYSVIGLNYGITLAVLAGILNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I L +  +      + +  AIE  +  + + P ++G  + +  + T   
Sbjct: 278 YFGTFIAFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G     GL G+     + A+I +I        ++
Sbjct: 338 LIGASAVAGLWGVIFAIPVYAVIKIIVTRLFNYYRK 373


>gi|229823123|ref|ZP_04449192.1| hypothetical protein GCWU000282_00420 [Catonella morbi ATCC 51271]
 gi|229787289|gb|EEP23403.1| hypothetical protein GCWU000282_00420 [Catonella morbi ATCC 51271]
          Length = 401

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 107/320 (33%), Gaps = 4/320 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++++ ++ +  +P+     ++   +  +      + ++ L    +  L      ++   
Sbjct: 59  PIITSGVLYYLLYPLVDRLQAR-GMNRQWAIWAIFIGLILLSAWGIASLVPTLQTQILSF 117

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
              +             L   P      E+  +  S        S     +         
Sbjct: 118 ARSLPKYYDEI---YHMLYQSPFLTENKEVTQRLQSFLDGFDFRSMAEQLSRFASSTFGS 174

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                       + ++ + I L++   DG  +   +         A   ++       + 
Sbjct: 175 LGSVVGAVTSVIMGLLTVPIILYYLLADGQRLGDYILKFVPTKHRAMASRMMYQGHYQVA 234

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  I+AI   ++    Y + G+   +ALGV++  + +IP          +  + + 
Sbjct: 235 QYIRGQIIVAICVAIMFSIGYSIVGLDYAIALGVVSGFLNIIPFLGSFIAVIPAFIIALI 294

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +      + +   +E  I  + + P ++G  +K+  +     L+   +  GL+G+ +G 
Sbjct: 295 TSPVMVLKVAIVMMVEQTIEGRFIAPQVLGNNLKIHPVTILIVLLSAGKAFGLVGVILGV 354

Query: 333 VLMALIAVIWKESIMAIKEN 352
              A+I VI  E     +E 
Sbjct: 355 PGYAVIKVIVGEFYELYRER 374


>gi|120597402|ref|YP_961976.1| hypothetical protein Sputw3181_0571 [Shewanella sp. W3-18-1]
 gi|146294457|ref|YP_001184881.1| hypothetical protein Sputcn32_3370 [Shewanella putrefaciens CN-32]
 gi|120557495|gb|ABM23422.1| protein of unknown function UPF0118 [Shewanella sp. W3-18-1]
 gi|145566147|gb|ABP77082.1| protein of unknown function UPF0118 [Shewanella putrefaciens CN-32]
          Length = 360

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 159/349 (45%), Positives = 222/349 (63%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCRGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA V ++   ++PL F+F Y + E++  V  +V  NQHG  VP W+ ++P       L 
Sbjct: 63  TIALVLIVLGLVIPLAFVFSYALHEIRGWVEWLVHTNQHGAAVPVWIKELPLIGEWLTLQ 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                          + +    +  I R+  + G   L   L+++FM+I LFF Y+DG  
Sbjct: 123 WHEFIGEPHELGKIISAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEH 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E 
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPET 351


>gi|146342802|ref|YP_001207850.1| hypothetical protein BRADO5979 [Bradyrhizobium sp. ORS278]
 gi|146195608|emb|CAL79635.1| Conserved hypothetical protein; putative membrane protein, membrane
           transport protein [Bradyrhizobium sp. ORS278]
          Length = 660

 Score =  147 bits (372), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 96/359 (26%), Gaps = 29/359 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   +   II+  LYF +    PV  A+++ F   P+ +    +         V     
Sbjct: 21  ALAVALFAVIIIALLYFGRDILVPVALAILLSFVLAPLVAQLQ-RLRAPRGLAVVSVVFL 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              L       L      ++ +L S++           +   D   G    E  +  L  
Sbjct: 80  AFVLIFA----LGSLLATQLTQLASELPNYQSTMSNKIQSFRDTKAGRGTLERASDMLRD 135

Query: 130 PQSLKILSETFLKTNGIDFI----------------------PRFASRFGMIFLDYCLSI 167
                   +          +                                 +    + 
Sbjct: 136 LGKELDKPKEPEAPRPAGGLRGNSSTPVAPIPVEVRQPDPGALDSLRTLISPLIHPLATT 195

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +II + F       +  +L  L                   +   FL    +  G G+
Sbjct: 196 GIIIIFVIFILLQREDLRNRLIRLAGSSDLQRTTAALDDAAYRLSRLFLTQLALNGGFGV 255

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWG 285
           V+G   WL G+PS +  G++ A +  +P    +   A  + L                  
Sbjct: 256 VIGLGLWLIGIPSAILWGILAAALRFVPYIGAVIAAAFPLALAAAVDPGWTMLIWTLALF 315

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   ++   + P + G    L  +             G +GL +   L   + VI + 
Sbjct: 316 VVVEPLLGHVIEPMVYGRSTGLSPVAVVVSAAFWTALWGPIGLVLATPLTVCLVVIGRH 374


>gi|227877174|ref|ZP_03995248.1| permease [Lactobacillus crispatus JV-V01]
 gi|256842728|ref|ZP_05548216.1| permease [Lactobacillus crispatus 125-2-CHN]
 gi|256848962|ref|ZP_05554396.1| permease [Lactobacillus crispatus MV-1A-US]
 gi|262045695|ref|ZP_06018659.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|293380173|ref|ZP_06626255.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|295692527|ref|YP_003601137.1| permease [Lactobacillus crispatus ST1]
 gi|312977748|ref|ZP_07789495.1| putative membrane protein [Lactobacillus crispatus CTV-05]
 gi|227863228|gb|EEJ70673.1| permease [Lactobacillus crispatus JV-V01]
 gi|256614148|gb|EEU19349.1| permease [Lactobacillus crispatus 125-2-CHN]
 gi|256714501|gb|EEU29488.1| permease [Lactobacillus crispatus MV-1A-US]
 gi|260573654|gb|EEX30210.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|290923217|gb|EFE00138.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|295030633|emb|CBL50112.1| Permease [Lactobacillus crispatus ST1]
 gi|310895487|gb|EFQ44554.1| putative membrane protein [Lactobacillus crispatus CTV-05]
          Length = 395

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 116/344 (33%), Gaps = 4/344 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F++  +  F      P+L A+I  +   P+      K +       ++  + V+   I
Sbjct: 41  VSFVLNPAWIFFSAILPPLLLAVIQYYIMNPVVDWCERKFKIPRVVTIIVLFLLVVVALI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 101 WIINILVPIAQNQINSLIKNWPHIWNDAVNATQNALQDPRLHSFKGSIKGMIDNTQKTLF 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        I  I    S   M+ +            LFF  +DG  +   +       
Sbjct: 161 KSGQSTINATIGNISSAVSIITMVAMTLLT----APFILFFMLKDGHQLRPYITKFAPEK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + K+   +   + S   G   +A   G++    Y L G+P  VAL ++   M +IP
Sbjct: 217 WQPSFSKLLYDINYAVASYVRGQITVAFWVGVMFSLGYILIGLPYGVALAILAGFMNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      I + I  +      + +  AIE  I  + L P+++G  +++  + T   
Sbjct: 277 YFGTPLAMIPVIVISIMTSGSMLIKVLIVFAIEQTIESRILSPWVMGNKMEMHPITTILL 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+G     GL G+  G  + A++ +I        +   +    N
Sbjct: 337 LIGASAVWGLWGVVFGIPIYAILKIIVSRVYNYYRRESKLFEEN 380


>gi|315122337|ref|YP_004062826.1| ABC transporter permease [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495739|gb|ADR52338.1| ABC transporter permease [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 361

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 258/353 (73%), Positives = 293/353 (83%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRE +LNPQ IMRW I+FI+L  +YFLKGFFAPVL+ALIIGF SWPIYS FISK+E+S T
Sbjct: 1   MREIILNPQRIMRWTIIFIVLACIYFLKGFFAPVLTALIIGFASWPIYSLFISKEEKSFT 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A IAT++V+ LFI+PLLF  YY  LE+K L S V L N+ GIP P WLS IPGG   +
Sbjct: 61  LEATIATLTVILLFIIPLLFFSYYTTLEIKNLASYVALVNEKGIPKPSWLSHIPGGGVWA 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            LWTK+LS PQSL  L+E  L TNG  F  +F S F     DY LSIIFM+IALFFFYRD
Sbjct: 121 GLWTKYLSPPQSLMTLTENILTTNGTQFTLKFVSYFSNCIFDYLLSIIFMLIALFFFYRD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S+S QLDSLG +L P YW+KISRI+P+VIRSTF+GMT+IAIGEGLVLGSAYW+AGVPS
Sbjct: 181 GLSMSLQLDSLGGYLLPVYWEKISRIIPRVIRSTFVGMTVIAIGEGLVLGSAYWIAGVPS 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + ALGVITAIMAMIPGGAP+SFT VSIYL+IKG+I NA  LF WGAIELFIVDKTLRPFL
Sbjct: 241 YTALGVITAIMAMIPGGAPVSFTVVSIYLVIKGSITNAILLFSWGAIELFIVDKTLRPFL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VGGPI+LPFLPTFFGLVGGVRTMGLLGLFIGPV+MAL+ VIWKESI+AI+EN 
Sbjct: 301 VGGPIRLPFLPTFFGLVGGVRTMGLLGLFIGPVIMALMTVIWKESILAIRENN 353


>gi|261212265|ref|ZP_05926551.1| predicted permease [Vibrio sp. RC341]
 gi|260838873|gb|EEX65524.1| predicted permease [Vibrio sp. RC341]
          Length = 361

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 139/357 (38%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+     K        A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHDWLDRKLPSHHNISA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +     HG I        +   +  +  
Sbjct: 66  FLSCVVLTVIVVIPLLFIFGAIVQQGSKFSQNLYSWVTHGGIQELLSHPWVVKALGLANQ 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + ++   M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRVAQFATTFGSNLVSISAKILGDATSFVMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +G   G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G    A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLIGETTWAFFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDQS 361


>gi|314939808|ref|ZP_07847028.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314943896|ref|ZP_07850622.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314949993|ref|ZP_07853286.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314953515|ref|ZP_07856427.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314994283|ref|ZP_07859585.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314995151|ref|ZP_07860267.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313590642|gb|EFR69487.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313591318|gb|EFR70163.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594438|gb|EFR73283.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313597437|gb|EFR76282.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313640948|gb|EFS05528.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313643640|gb|EFS08220.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 362

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 114/330 (34%), Gaps = 7/330 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 30  FFSTLFAPVLIAGFLYYLLNPIVKLLM-KAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 89  VQQISSLASNMPDFIKQVESWLKEVAELPLFKEVD------INKYFEQLDISYGTIIQQF 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 143 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 203 QLNKTLANYISGQAIECLFVGTFTFLGYMVIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + +  +   A    +   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 263 AFLVTVFNDPVKALLCCVVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 322

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LG+F+G    A+   I    I  +KE+K+ 
Sbjct: 323 LGIFLGVPFYAICKTIISYIIKIVKEDKQN 352


>gi|73542361|ref|YP_296881.1| hypothetical protein Reut_A2676 [Ralstonia eutropha JMP134]
 gi|72119774|gb|AAZ62037.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 388

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/353 (20%), Positives = 139/353 (39%), Gaps = 5/353 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  +    + ++ +I  SL  L  F   +L   I+ F+SW  Y+          +
Sbjct: 1   MSSGQLIEKIAAVFALVVLIGGSLLVLAPFTTALLWGAILAFSSWYPYTVLARWLGNRRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
             A+I  V    + + P ++        + +L + V          +P WLS +P     
Sbjct: 61  LAALICVVLAAVIVLGPFVYAGASFSAHIDQLSALVDRYIDQGIPQLPDWLSSLPYVGGY 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +   + L H  S  + +   L       +       G         +   II  FFFY 
Sbjct: 121 LQTSWERLIHADSEMVANVRKLIAPVGHALLGAGLSVGAG----LGQLALSIILAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G      L +    +       +  +    ++    G+   A  + ++ G   W+AGVP
Sbjct: 177 GGEYAIDWLRAGMRRIAGERADHLLALAGSTVKGVVYGVLGTAFIQAVLQGIGLWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG +T  +++IP G P+ +   +++L   G    A  L +WG   + + D  ++P 
Sbjct: 237 AAAILGFVTFFLSVIPVGPPLVWLPAALWLYHGGETGWAIFLVVWGVAVVGMADNVVKPL 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     +P +    G++GG    G LG+FIGP L+A+   + ++  +  +  
Sbjct: 297 LISKGTGMPLIWIMMGVLGGALAFGFLGVFIGPTLLAVAYALLRDWTIGSQVE 349


>gi|292488505|ref|YP_003531389.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|292899691|ref|YP_003539060.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199539|emb|CBJ46656.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553936|emb|CBA20981.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|312172649|emb|CBX80905.1| putative AI-2E family transporter [Erwinia amylovora ATCC BAA-2158]
          Length = 372

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 140/354 (39%), Gaps = 4/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++    L  L+ L  +F+ +L A I+     P+ S       + +   +++  +
Sbjct: 8   KGFFIFILAVTTLGFLHILGPYFSAILWAAILAIIFHPLKSKIRKYCGDRNGLASMLTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  +PL  +     +E   L +++         V   + +     W      ++  
Sbjct: 68  IICLIVFIPLAVVVSSLAVEFNALYNRIQANQTELTTVATSVVNHLP-EWLRHFLAENNL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +  +      + +   G  F        G     + +    M+  LFF  +DG  +    
Sbjct: 127 NDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGVMLYLLFFLLKDGAYLVGMA 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G  ++A+ +G + G A+W AG+   +  G + 
Sbjct: 187 LDAIP-LSRFVKHHLFVKFAAVSRATVKGTVVVAVVQGTLGGIAFWCAGIQGSMLWGSLM 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +  V I+LL  G +     L  +  + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVVIGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           P        +GG+   G+ G  IGP++ AL    W        + N ++I S+F
Sbjct: 306 PDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRDHRGNTDEIDSDF 359


>gi|242373654|ref|ZP_04819228.1| permease [Staphylococcus epidermidis M23864:W1]
 gi|242348622|gb|EES40224.1| permease [Staphylococcus epidermidis M23864:W1]
          Length = 404

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 124/354 (35%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
           G+   +++ I++       Y  + F         P++ +L++ +   PI +     +   
Sbjct: 34  GLTALVLLGIVIFIFDKVSYVFEPFIIVFNTIAAPIIVSLVLFYLFNPIVNLMERYR-IP 92

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  V+++ +  + +  L      +++  +                +++      
Sbjct: 93  RLLGITIIYVAIVGIITLIVNLLIPLIGSQVESFIKNSPHYLSKITQSVDKITN----NS 148

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++            + ++  D      + F     +  + I+     LFF  
Sbjct: 149 LLSGYMGQINDWLESAQKKIPSMLSDYFDGFGSKLASFAEAVANVGVVIVTTPFVLFFML 208

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    F   +  +   +   + S   G  I++   G++L   Y + G+
Sbjct: 209 KDGHRFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLFIGYSIIGL 268

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P
Sbjct: 269 KYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAIVWTLVQFFEGHFISP 328

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     MG++G+ IG    A++ V+     +  K  
Sbjct: 329 NVMGKTLKIHPLTIIFILLCAGNLMGVVGVIIGIPFYAVLKVLVSHIFLLFKRR 382


>gi|163789472|ref|ZP_02183911.1| Putative transport protein [Carnobacterium sp. AT7]
 gi|159875326|gb|EDP69391.1| Putative transport protein [Carnobacterium sp. AT7]
          Length = 422

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 113/326 (34%), Gaps = 5/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL     P++ A I+ +   P+      K +           + +  L +  +  L    
Sbjct: 77  FLSVIGMPIIFAGILYYLVNPLVDWMERK-KIPRVLGIAWIFIVIGALIVWGITTLIPII 135

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +   ++    +   + +                  +   L+   +  + + +    + 
Sbjct: 136 QEQTISIIENWPIYWDNIVFQIDSWLR----SDVLSEFQTRLTDLNANLLSNVSDQANSV 191

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +D              +  ++II M   LF+  +DG S+   +  +          ++  
Sbjct: 192 LDTTFTSIGSVVGALTNVVIAIITMPFILFYLLKDGKSLPYHVMKMIPSKMRGGTYRLLT 251

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G  ++A   GL+    +   G+   V LGV+   + +IP       T  
Sbjct: 252 EINTQISQYIRGQLMVAFFVGLMFWIGFASIGLEYAVTLGVLAGFLNLIPYLGSFLATVP 311

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + +  +      + +  AIE  I  + ++P ++G  +++  L     L+   +  G+
Sbjct: 312 AIVIALVDSPSMLIKVLIVFAIEQTIEGRVIQPQILGNNLEIHPLTIIIVLLSAGKIFGV 371

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ +G    A++ VI        K+
Sbjct: 372 PGVILGIPGYAILKVIVVHFFRWYKD 397


>gi|256851487|ref|ZP_05556876.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260660908|ref|ZP_05861823.1| permease [Lactobacillus jensenii 115-3-CHN]
 gi|256616549|gb|EEU21737.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
 gi|260548630|gb|EEX24605.1| permease [Lactobacillus jensenii 115-3-CHN]
          Length = 395

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 118/327 (36%), Gaps = 4/327 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI+  +  F      P++ AL+  +   PI   F  K +   T   ++  + V+   I
Sbjct: 36  ISFILNPAWVFFCAILPPLILALVQYYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALI 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   + L   P            +   +    
Sbjct: 96  WVINSLLPIIQGQVDVLIKNWPNIWDTSVKTTQNLLHDPHLKGFKSNINSVIDSVEKTLF 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S     T  +  I    S   MIF+            LF+  +DG  ++  L       
Sbjct: 156 KSWQKTGTAALTNISSAVSVITMIFMTLLT----APFVLFYMLKDGHQLNGCLTKFAPRR 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +   + ++   + + I +   G   +A+  G++    Y + G+P   AL V+ A M +IP
Sbjct: 212 WQDSFSRLLHDINEAISAYIRGQITVAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + +    +      + +  AIE  I  + + P +VG  +K+  + T   
Sbjct: 272 YFGTFIALIPVLIIASITSWGMLINVLIVFAIEQTIETRFISPIVVGNKMKMHPITTILL 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+G     GL G+  G  + A++ +I 
Sbjct: 332 LIGASAVWGLWGVIFGIPIYAVVKIIV 358


>gi|319782650|ref|YP_004142126.1| hypothetical protein Mesci_2946 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168538|gb|ADV12076.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 661

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 105/354 (29%), Gaps = 22/354 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +     +   + +LYF +  F P+  AL++ F   P+ ++   K         + + 
Sbjct: 27  RTSLPNVAAIVTTVAALYFGREVFLPIAIALLLTFALAPLVAAL-KKLGIPRIAAVIASV 85

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +       +    +      ++ EL   + +   + +   R L +   G       +K +
Sbjct: 86  LGAFAALGLFSFIVA----TQVSELAQNIPVYQTNILTKIRSLKETGVGGGILARLSKVV 141

Query: 128 SHPQSLKILSETFLKTNGIDFI---------------PRFASRFGMIFLDYCLSIIFMII 172
                     +  L     +                  +         +    S   +I+
Sbjct: 142 ERVGQEIDRQDPSLPVATPEKPPREPVPVEIVAHERPLQVLQNVVGPLISPLGSAGLIIV 201

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            + F   +   +  +   L  +       +  +   K +    L   ++ I   + +   
Sbjct: 202 VVIFMLLEREDLRDRFIRLVGYGDLHRTTEALQDAAKRVGRYLLMQLVVNIVYAIPIAIG 261

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELF 290
            W  G+P+ +  G++   +  +P   PI      + + L +               +   
Sbjct: 262 LWALGIPNALLWGLLALALRFVPYIGPIIGMLLPLFLALAVAPGWSLVLWTAALFVVMEL 321

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I    + P+L G    L  L      +      G LGL +   L   + V+ + 
Sbjct: 322 ITGNVIEPWLYGSRTGLSPLAIIVAAIFWTWLWGPLGLILSTPLTVCLVVLGRH 375


>gi|191638756|ref|YP_001987922.1| UPF0118 membrane protein yueF [Lactobacillus casei BL23]
 gi|301066810|ref|YP_003788833.1| putative permease [Lactobacillus casei str. Zhang]
 gi|190713058|emb|CAQ67064.1| UPF0118 membrane protein yueF [Lactobacillus casei BL23]
 gi|300439217|gb|ADK18983.1| Predicted permease [Lactobacillus casei str. Zhang]
 gi|327382798|gb|AEA54274.1| YueF [Lactobacillus casei LC2W]
 gi|327385985|gb|AEA57459.1| YueF [Lactobacillus casei BD-II]
          Length = 392

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 111/339 (32%), Gaps = 7/339 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+      F      P+LSA  + +   PI      K   S     ++  + V+   +
Sbjct: 30  VSFLFAPVATFFSTLLIPILSAGFLFYLFNPIVKLLQ-KFHISRNISILLIFLVVIGALV 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + +    + ++ + V+ +    +         S        +      +    +   
Sbjct: 89  LVFMAVLPNLIYQVTQFVTNIPDFLKGVRSFISKASHYTWYQRLN------IGKYVASLQ 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +S + + +  +                  +SII + + LF+F +DG +    +  +  H 
Sbjct: 143 ISPSKVLSKVLGGFSTGLPTVIGSVASMMISIITIPVMLFYFLKDGENFVPSIQKMLPHR 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   +   +     G  I  +  G      Y + G+P    LG I  I+ +IP
Sbjct: 203 YHEEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVTIIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +           + +   I        + P ++G  + +  L     
Sbjct: 263 YLGPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIIL 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      GLLG  +     A+I  +        + ++E
Sbjct: 323 LMVAGNLWGLLGTILAVPTYAVIKTVVTYLYELYRFHQE 361


>gi|116255449|ref|YP_771282.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260097|emb|CAK03196.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 684

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 107/351 (30%), Gaps = 14/351 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            +P  +  +  +  ++  LYF K    P+  A+++ F   PI S    K         ++
Sbjct: 48  SSPSRMPAFASVLAVIAILYFGKDVLLPLAIAVLLTFALAPISSRL-RKLGMPRIPAVIV 106

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V    + ++  L +  +     + L +           +    +D       + +   
Sbjct: 107 TVVIAFLVLVLFGLVVAGHVAEVAQNLPAYQGNIIAKIRSLQESGTDSGIVRRLTSVVES 166

Query: 126 HLSHPQSLKILSETFLKTN-----------GIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 + +         +                    +      L    S+  +I+ +
Sbjct: 167 VGRELSNAEERPAAPGTGSRPREPVLVEIFAPSRPIETLTSLIGPLLGPIASLGLIIVVV 226

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F   +   +  +   L  +       +  +     +    L   ++    G+ L    W
Sbjct: 227 IFMLLEREELRDRFIRLVGYGDLHRTTEAIQEAGSRVARYLLMQLVVNCAYGVPLALGLW 286

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIV 292
             G+P+    G++  ++  +P   P+  T + ++L    +        +     +     
Sbjct: 287 AVGIPNPALWGMLAIVLRFVPYIGPVIATVLPLFLAFAVDPGWSLVLWVGAIFLVLELTS 346

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  + P+L G    L  L      +      G +GL +   L   +AV+ +
Sbjct: 347 NNVIEPWLYGSRTGLSPLAIIVAAIFWAWLWGPVGLVLSTPLTVCLAVLGR 397


>gi|24372067|ref|NP_716109.1| hypothetical protein SO_0472 [Shewanella oneidensis MR-1]
 gi|24345945|gb|AAN53554.1|AE015495_8 membrane protein, putative [Shewanella oneidensis MR-1]
          Length = 373

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 161/348 (46%), Positives = 226/348 (64%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +++   + R +++ ++   ++F   F  P L+ALII F+SWP+Y   + K    S   A 
Sbjct: 4   IISNAAVGRTLLILLLCAGVFFFIDFLVPALAALIICFSSWPLYKKLLVKCGGRSAVAAS 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA V ++   I PL+F+F Y + E++     +V ANQHG PVP W+ D+P       L  
Sbjct: 64  IALVLIVLGLITPLIFVFSYALQEIRIWAEWLVYANQHGAPVPLWIKDLPWVGEWLTLQW 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG S+
Sbjct: 124 QQFIGEPHELGQIVSAISGQNLTGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGESV 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++Q+D +GE + PA W + SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA 
Sbjct: 184 AKQVDVVGERILPARWYRFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVAF 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+TA MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGGP
Sbjct: 244 GVLTAFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGGP 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           IKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    + 
Sbjct: 304 IKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLRDDPDT 351


>gi|319650575|ref|ZP_08004715.1| hypothetical protein HMPREF1013_01320 [Bacillus sp. 2_A_57_CT2]
 gi|317397756|gb|EFV78454.1| hypothetical protein HMPREF1013_01320 [Bacillus sp. 2_A_57_CT2]
          Length = 366

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 117/343 (34%), Gaps = 5/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F    F P++ +  + F   P+        +   T   +I   +V+ L +
Sbjct: 26  ISFLFEPVGIFASTLFFPIIISGFLYFLLNPLVRLLQRY-KVPRTAAILIIYAAVIGLVM 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      ++ EL + +    +        +S      W  E     +   ++  +
Sbjct: 85  LIIGNIAPLISRQVTELFNDLPGYAKTTRDFVNSMSSTEEFKWFLEQDYISIEEIEARIM 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                L +     +    S       +  ++I+ +   LF+ ++DG      +       
Sbjct: 145 EYANTLPSRVTQGVAGIVSLVT----NIAITIVTVPFLLFYMFKDGDKFPAAVSKFLPAS 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     K  +   + + S   G   +A+  G +    Y +  +P  + + +I AI  +IP
Sbjct: 201 YREEGVKTLKETGETLSSYIQGQITVALFVGTLSFIGYLIIDLPYALVMALIVAITNIIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I   I    L P ++G  +          
Sbjct: 261 YVGPFLGGAPAVIVALFDSPTKAFLVVVVIVIAQQIEGNVLSPLILGKTLNTHPATIIIL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+      G+LG+ +     A+   I   ++  ++  K     
Sbjct: 321 LLVAGNLAGILGMILAIPTYAVTKTIVLNTVRFLRARKTAREE 363


>gi|225022466|ref|ZP_03711658.1| hypothetical protein CORMATOL_02506 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944705|gb|EEG25914.1| hypothetical protein CORMATOL_02506 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 430

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 105/339 (30%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++IM      L+     +     PVL A+I+    WP       K +  S    VI
Sbjct: 36  WALRFIIMVAAGYLLWRGLALVWEGLLPVLLAIIVSTVLWPPVRWL-RKHKVPSALSVVI 94

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++   +       +      + K+L  +     +      +                 
Sbjct: 95  VLITFFAILGGIFTAMAPSITTQSKDLAEQATKGIEQLQQWIQ------------GPPLN 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +  I   +    N +  I               ++ + M++  FFF +DG    
Sbjct: 143 IDLGHYNDIIDQISTFLQNRVTDIASRVVSGISTAGSIVVTFVLMLVLTFFFLKDGEGFL 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +     +    +  ++   +   +        II+  +   +     +  VP   AL 
Sbjct: 203 PMIRRTTGYNVGWHLTEVLTRIWNTLSGFIRVQAIISFVDASCICIGLLILHVPLAPALA 262

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT   + IP    +       I  L+   + NA  +         +    L+P L    
Sbjct: 263 VITFFASFIPIVGALVAGALAVIIALVSNGVTNALLVLAIIIAVQQLEGHILQPVLQSKA 322

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A ++V+ +
Sbjct: 323 MNLHAAIVLLSVTIGSTMFGVVGAFLAVPVAATLSVLVR 361


>gi|328461853|gb|EGF34075.1| putative permease [Lactobacillus helveticus MTCC 5463]
          Length = 350

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 55/333 (16%), Positives = 110/333 (33%), Gaps = 4/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                  P+L A+I  +   P+   F  K +       ++  + V+   I  +  L    
Sbjct: 3   IFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALIWIINILVPIA 62

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L+          +   +     P            + + Q     S        
Sbjct: 63  QNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLFKSGQSTINAT 122

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  I    S   MI +            LFF  +DG  +   +       + + + ++  
Sbjct: 123 IGNISSAVSIITMIVMTLLT----APFILFFMLKDGHQLRPYITKFAPEHWQSSFSQLLY 178

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP          
Sbjct: 179 DINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIPYFGTPLALIP 238

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              + I  +      + +   IE  I  + L P ++G  +++  + T   L+G     GL
Sbjct: 239 VFVIAIMTSGSMIIKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTILLLIGASSVWGL 298

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G+F G  + A++ +I        +   E  S 
Sbjct: 299 WGVFFGIPIYAILKIIVSRVYNYYRRESEIFSE 331


>gi|225350939|ref|ZP_03741962.1| hypothetical protein BIFPSEUDO_02514 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158395|gb|EEG71637.1| hypothetical protein BIFPSEUDO_02514 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 512

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 37/348 (10%), Positives = 110/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  +     +     ++     ++ +L I     P+    +       +F ++
Sbjct: 45  RALLYIAIAIVGFTFCWRSWGKIEYLVIDIIVSLFIALAVEPVVVPLVKH-GWKRSFASL 103

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            + + +  +  V         + +M  LV+ +    +         ++            
Sbjct: 104 FSLLMLAVMLGVLFTLFGNLFVQQMIALVNGLPDLYEQMCQFASQYANFQ---------- 153

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    +L       ++T+ +      A         + ++++ +I+  ++    G  +
Sbjct: 154 --LPEINNLGNEILKNIQTSWVTDFAGTALNTVSGLFSFLINLMTIIMTTYYISAAGPKL 211

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S      I+A+      G    L  VP  + L
Sbjct: 212 RRAACQWMAPAAQRRFLFVWTVSQSQISSFLFSRAILALLNAFFTGICLMLLHVPYWLPL 271

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++      ++ A  + ++  +   I +    P +  
Sbjct: 272 ALFCGVVSQFIPMLGTYIGGALPVLFAWGSCGLWQAVAVLVFICVYQQIENLIFAPKISQ 331

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G LG F+   ++A +  I++      +
Sbjct: 332 RTMDVNDAVAFLAVLAFTSLFGALGAFLALPVVASVQTIFRTYTKRYE 379


>gi|291537174|emb|CBL10286.1| Predicted permease [Roseburia intestinalis M50/1]
          Length = 462

 Score =  147 bits (370), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 100/336 (29%), Gaps = 17/336 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------------EESSTFLAVIAT 67
               L     P++  ++I +   PI                       + S       + 
Sbjct: 63  FWKKLSLILQPIIIGVVIAYLLNPIMKFLEGHLLKFLEPRMKSKCKAKKTSRGIAITGSL 122

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTK 125
           V ++ + ++ +  +       ++ +++      ++       +++          +   K
Sbjct: 123 VFLVGICVLLVAAIVPSISASIQSMITSFPQEAKNLTKWVDEVTNGDTELASMIQQGVDK 182

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                ++             +  I           L+  + +I  +  +           
Sbjct: 183 ITDTVETFFEDDIFSKVQTYLTSITSGVIYGVKFVLNVIVGLIISVYVMADQEHFAGQAK 242

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + ++ + +         R   ++      G  + +   G++      +  +P  V + 
Sbjct: 243 KIVYAMFKPVRANVIVDTVRKSNEIFSGFISGKILDSAIIGVLAYIVLAIMKMPDTVLVA 302

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  +IP   P      S  +++  N        ++  +   I    + P ++G   
Sbjct: 303 VIIGVTNVIPFFGPFIGAVPSFIIIVLQNPIQGLYFLIFIVVLQQIDGNIIGPKILGSST 362

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L      F ++      G  G+ +G  LMA+I  +
Sbjct: 363 GLSAFWVVFAILVFGGLWGFPGMLLGVPLMAVIYYV 398


>gi|311740740|ref|ZP_07714567.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304260|gb|EFQ80336.1| integral membrane protein [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 489

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/339 (18%), Positives = 113/339 (33%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLY-FLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R +I+ + L +LY  L  F     PVL ALII     P+           +   A +
Sbjct: 57  WAVRLLIICVFLYALYRLLGNFWQGLLPVLLALIICTVLAPVAKKL-RDIGLPAALAAAV 115

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +         + F+    + + + L  + V   Q               +WA      
Sbjct: 116 TILVSFTAVGGLIAFIAPDFVRQSRSLYLQTVSGIQSLQ------------LWAQGPPLN 163

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   S  I             I               +++  +++  FFF +DG    
Sbjct: 164 LDSDDMSSYIDEAASWLQQRAGAIAGSVFTGIGTATSILVTLFIVLVLTFFFLKDGAKFL 223

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L          +  ++       +        I+++ + + +G    L GVP  +AL 
Sbjct: 224 PWLRDATGKRAGWHLTELLTRAWATLGGFIRAQAIVSLVDAVFIGVGLALIGVPLAMALA 283

Query: 246 VITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +IT I   IP    I   A+S+   L+   +  A  +     +   +    L P+L    
Sbjct: 284 IITFIAGFIPFVGAIVAGALSVTIALVSLGVTKALLVLGLVLLVQQLEGNVLSPWLQSKA 343

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  +     +  G    GL+G F+     A+ AV ++
Sbjct: 344 MDLHPVIVLVSVTVGSALFGLIGGFLAVPAAAMFAVAYR 382


>gi|192288979|ref|YP_001989584.1| hypothetical protein Rpal_0549 [Rhodopseudomonas palustris TIE-1]
 gi|192282728|gb|ACE99108.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 384

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 150/351 (42%), Gaps = 3/351 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +       +++    +  + L   ++ VL  ++I     P+               A+++
Sbjct: 4   SENKFFILLLVVATGLFGWILWPLYSAVLWGMVIAILFAPLNRGLNRAFGFRRNLAALMS 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++ + ++P+  L      E   + +K+   N   +   R L       W  +L ++ 
Sbjct: 64  VTIIVLMVLLPMSLLGAALAREAAGMYTKIESGNLDLLKTMRELLAARP-DWLGDLLSRF 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      +     G  ++   A   G    D+ +++  M+  LFF  RDG  ++ 
Sbjct: 123 GVGNLADIQQRLSAALLRGSQYLAGQALDIGQSTFDFTVNLFVMVYLLFFLLRDGDLLAA 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L   +  ++      VIR+T  G  +IA+ +G + G A+++ G+   +   V
Sbjct: 183 RIRRATP-LGVDHQTRLLDKFTVVIRATVKGNMLIALIQGALGGLAFYVLGISGALMWAV 241

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P     I +  +++YL+  G++++   L +WG + + +VD  LRP LVG   
Sbjct: 242 VMAFLSLLPAVGAGIVWLPMALYLIASGSVWHGVGLIVWGMLVIGMVDNFLRPILVGKDT 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           ++P        +GG+   GL G  IGPV+ A+    W    +A ++  +  
Sbjct: 302 RMPDYVVLISTLGGLEVFGLNGFVIGPVIAAMFIATWDIYSIAREDAGDTP 352


>gi|308177055|ref|YP_003916461.1| hypothetical protein AARI_12820 [Arthrobacter arilaitensis Re117]
 gi|307744518|emb|CBT75490.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis
           Re117]
          Length = 456

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 112/347 (32%), Gaps = 14/347 (4%)

Query: 10  GIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           G +  + + I L   Y L         +  AL I     PI    + +   S        
Sbjct: 121 GFLGTIGVGIALGGFYLLTNVGSLMTWIAIALFIALGLDPIVRFLMRR-GLSRPLAVAAT 179

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            VS++ +F   +  +    + ++   +++        +             W  E+  ++
Sbjct: 180 MVSLLAIFGGFMALIIPTLVNQITAFITRAPEIVDDFLK----------SEWVVEIDRQY 229

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + +  +   F  +  +  +                 ++ +++   +F      +  
Sbjct: 230 AVSERIMTEVDRFFGDSGAVTNVFGGVLGVSQTVAQSMFGVLIVLVLAIYFLASLPGMMS 289

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L          +++  + + + +  +G   +AI   L+      + GVP    L +
Sbjct: 290 FSLRLTPRSKRERVAELTVRITRSVGNYVMGQATVAILNCLLALILMSILGVPFTALLTL 349

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + A++A IP    +    +   + +      A    +     L I    + P ++   + 
Sbjct: 350 LVALLAFIPLVGGVIAGVLVTLVTLSLGWQTALIYAICYFGYLQIEAYFVSPRIMRRAVA 409

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LP       ++ G    G+ G  +   + A   ++  E  +A ++ +
Sbjct: 410 LPGAVAVISVIAGGSLAGVTGALMAIPVAASAMILLHEVFVARQDRR 456


>gi|52787063|ref|YP_092892.1| YueF [Bacillus licheniformis ATCC 14580]
 gi|163119626|ref|YP_080468.2| hypothetical protein BL02615 [Bacillus licheniformis ATCC 14580]
 gi|319647592|ref|ZP_08001811.1| hypothetical protein HMPREF1012_02850 [Bacillus sp. BT1B_CT2]
 gi|52349565|gb|AAU42199.1| YueF [Bacillus licheniformis ATCC 14580]
 gi|145903136|gb|AAU24830.2| hypothetical protein BL02615 [Bacillus licheniformis ATCC 14580]
 gi|317390318|gb|EFV71126.1| hypothetical protein HMPREF1012_02850 [Bacillus sp. BT1B_CT2]
          Length = 369

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 6/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+    + F    F P+L A I+ F   PI      K     T   ++  +  +    
Sbjct: 26  VSFLFEPIIVFASTLFTPILIAGILYFIFNPIVRLLEKKL--PRTLSILLIYLVFVAFIG 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++ +L + +    +      + +S+     W             +   
Sbjct: 84  FVLSAVGPVFTKQVTDLFNNIPSYVKQIQIFIKQMSNSQWFTWIMNQ----DFVSVAKIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S     T+  + I    +    +  +  L+ + +   LF+  +DG         +    
Sbjct: 140 SSIGEYLTSLPENITGSLTSVFGVVTNIALTAVTVPFILFYMLKDGHRFPNLAVKILPDK 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     KI + + + + +   G  I+ +  G      +W+AGV   + LG+I A+  +IP
Sbjct: 200 YKNEGLKIFKDLYETLAAYIQGQLIVCLFVGTACFIGFWIAGVKYALILGLIIAVTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +    +   A    +            L P ++G  +    L     
Sbjct: 260 YVGPFLGAAPAVIIAFLDSPTKALIALIIVVAVQQTDGNLLSPLIIGRRLNTHPLTIILL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+G     G+LG+ +     AL+   
Sbjct: 320 LIGAGSFGGILGMILAVPAYALLKAF 345


>gi|255324406|ref|ZP_05365523.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
 gi|255298312|gb|EET77612.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
           SK141]
          Length = 489

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 113/339 (33%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLY-FLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R +I+ + L +LY  L  F     PVL ALII     P+           +   A +
Sbjct: 57  WAVRLLIICVFLYALYRLLGNFWQGLLPVLLALIICTVLAPVAKKL-RNIGLPAALAAAV 115

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +         + F+    M + + L  + V   Q               +WA      
Sbjct: 116 TILVSFTAVGGLIAFVAPDFMRQSRSLYLQTVSGIQSLQ------------LWAQGPPLN 163

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   S  I             I               +++  +++  FFF +DG    
Sbjct: 164 LDSDDMSSYIDEAASWLQQRAGAIAGSVFTGIGTATSILVTLFIVLVLTFFFLKDGAKFL 223

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L          +  ++       +        I+++ + + +G    L GVP  +AL 
Sbjct: 224 PWLRDATGKRAGWHLTELLTRAWATLGGFIRAQAIVSLVDAVFIGVGLALIGVPLAMALA 283

Query: 246 VITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +IT I   IP    I   A+S+   L+   +  A  +     +   +    L P+L    
Sbjct: 284 IITFIAGFIPFVGAIVAGALSVTIALVSLGVTKALLVLGLVLLVQQLEGNVLSPWLQSKA 343

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  +     +  G    GL+G F+     A+ AV ++
Sbjct: 344 MDLHPVIVLVSVTVGSALFGLIGGFLAVPAAAMFAVAYR 382


>gi|76818196|ref|YP_336095.1| PerM family permease [Burkholderia pseudomallei 1710b]
 gi|76582669|gb|ABA52143.1| Predicted permease PerM family [Burkholderia pseudomallei 1710b]
          Length = 374

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 124/327 (37%), Gaps = 3/327 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  FF  +    I+     P+     ++  +     A++    ++ + I+PL F+   
Sbjct: 46  WILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLAALVTLSLIILIVILPLAFVTAT 105

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+     ++     +     +             L    L+    ++          
Sbjct: 106 LVQEIAYAYQQIKTMQPNMTQYFQEFMHALPSSVHRVLHNYGLTDIAGIQKKLTDG-AAA 164

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F+   A   G     + +S   M+  +FF  RDG  I +++      L   + + + 
Sbjct: 165 ISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALP-LDEEHKQHLL 223

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
                V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P     + + 
Sbjct: 224 TKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVWV 283

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +GG+   
Sbjct: 284 PAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALF 343

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G  IGP++ AL    W       +
Sbjct: 344 GINGFVIGPLVAALFMASWDIFARTEQ 370


>gi|270261462|ref|ZP_06189735.1| putative transport protein [Serratia odorifera 4Rx13]
 gi|270044946|gb|EFA18037.1| putative transport protein [Serratia odorifera 4Rx13]
          Length = 370

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 138/354 (38%), Gaps = 4/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  +    L  L  +++ VL A+I+     P+ +       + +  ++++  +
Sbjct: 8   KGFFILILFIVTAAFLDVLGPYYSSVLWAIILAVIFHPLKNKLKQYLGDRNGLVSLLTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +   PL  +     LE   L  K+   N     +   +     G WA     +H  
Sbjct: 68  VICLIVFTPLAIIASSLALEFNVLYEKLQNNNTQLPAMLAEVMQHLPG-WARHFLAEHNL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  F+       G    ++ +    M+  LFF  +DG  +    
Sbjct: 127 DSAAEIQKQLSDVALKGGQFLAGSVFLIGKGTFNFAVGFGIMLYLLFFLLKDGPYLVTLA 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G  ++AI +G + G A+++ G+   +  G + 
Sbjct: 187 LEALP-LSEHVKHHLFVKFAAVSRATVKGTVVVAIVQGALGGLAFYITGIDGSLLWGALM 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +   +IY    G ++    L  +  + + +VD  LRP LVG   K+
Sbjct: 246 AFLSIIPAVGSAIIWVPAAIYFFATGMLWQGAFLVGFFVVIIGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           P        +GG+   G+ G  IGP++ AL    W        +E  ++I   F
Sbjct: 306 PDYLILISTLGGMEIYGINGFVIGPLIAALFIACWNILSGRDSEETTDEIDEAF 359


>gi|126172699|ref|YP_001048848.1| hypothetical protein Sbal_0447 [Shewanella baltica OS155]
 gi|125995904|gb|ABN59979.1| protein of unknown function UPF0118 [Shewanella baltica OS155]
          Length = 360

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 160/348 (45%), Positives = 224/348 (64%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P       L 
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG  
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEQ 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|78063136|ref|YP_373044.1| hypothetical protein Bcep18194_B2289 [Burkholderia sp. 383]
 gi|77971021|gb|ABB12400.1| protein of unknown function UPF0118 [Burkholderia sp. 383]
          Length = 353

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 135/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A++   
Sbjct: 11  QKFFYFLLAAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVTLS 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +     + +           L    LS
Sbjct: 71  LIVLIVILPLVFVAATLVQEIAYVYQEIKTAQPNYSQYFQDIIHALPSSIQHLLQKYGLS 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++                  A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 131 NLPGIQKKLTDGAAQ-ISQLAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 190 RRALP-LDDEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 248

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 249 AFLSLLPAIGASLVWVPAALYFLMIGALWKCAILVAFCVGVIGLVDNLLRPILVGKDTKM 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 309 PDWVVLISTLGGMALFGITGFVIGPLVAALFMASWDIYARSEQGE 353


>gi|126665221|ref|ZP_01736204.1| Predicted permease PerM family protein [Marinobacter sp. ELB17]
 gi|126630591|gb|EBA01206.1| Predicted permease PerM family protein [Marinobacter sp. ELB17]
          Length = 378

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 143/348 (41%), Gaps = 5/348 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                  M++ + +  +  +K FF P+  A+ I     P+      +  +     A+I  
Sbjct: 6   ETRAFLAMLVGVSVAFILLMKPFFGPIFWAVAIALIFHPVQLKLARRFGDRPNTNALITL 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              M + ++P+L L    + E   L  K+   +   +    ++  +     A + +    
Sbjct: 66  FLCMVIVVIPVLLLVASLVAEGIGLYQKIQTGD---VRPGEYIDQVNQSFPAIQSFLAQF 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               S        L  +G  F+ + A   G     + L +  M+   FF  RDG S+ + 
Sbjct: 123 DISFSELRDRTVNLVVSGSQFLGKQALGLGQNTFQFFLGLALMVYLAFFLLRDGVSLVEL 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L     + +     +V R+T  G  +IAI +G + G  +W+ G+   +  GV+
Sbjct: 183 LIRALP-LGDERERLLFAKFAEVTRATVKGNLLIAIIQGAMGGLIFWILGIEGALLWGVV 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            AI++++P  GA + +   +IYL   G++  A  L  +G + + + D  LRP LVG   K
Sbjct: 242 MAIVSLLPAVGAALVWVPAAIYLAAVGDVVQALILTAFGVVVIGLADNVLRPILVGRDTK 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LP        +GG+   G+ G  +GP++ AL    W   I        
Sbjct: 302 LPDYIVLLSTLGGLAMFGINGFVMGPLVAALFNAFWGIFIREFSHESP 349


>gi|219682959|ref|YP_002469342.1| hypothetical protein BLA_0467 [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219620609|gb|ACL28766.1| putative membrane protein [Bifidobacterium animalis subsp. lactis
           AD011]
          Length = 519

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 103/347 (29%), Gaps = 19/347 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   +I   +   ++     +      ++ AL +     P+    I          +V
Sbjct: 20  RALFYAVIAVYLGWFVFTSYGKITYIVFDIVIALFLALAVEPLVIRLIRH-GWKRGVASV 78

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                ++ + IV +       + +M  +V  +                            
Sbjct: 79  TCLAGLLVIVIVLMALFGNMFVQQMISMVKGLPDLYNQFAAFVD------------AKTH 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L     L       +K + +      A    M  L   L++   ++  F+    G  +
Sbjct: 127 FKLPEMNDLGGEIMKNIKGSWVTDFAGQAVSTTMGVLGQILNLTTALMVAFYISIAGPKL 186

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +           +  +  +V   I       +I+A      +     +  VP  + L
Sbjct: 187 RRSVCQWIAPRSQRRFLMVWTVVQDQISGFLFSRSILAAINAACMSVFLMIIKVPYWLPL 246

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   I++  +P     I      ++   +  I  A  + ++  +   I +  L P +  
Sbjct: 247 ALFCGIVSQFVPTLGTYIGGALPVLFAWGERGIGYAIGVVVFITVYQQIENLVLSPKISE 306

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + L     F  ++      G  G F+   + A I V+ K ++   
Sbjct: 307 RTMDLNPCIAFLTVLFFGSIFGAAGAFLALPITASIQVLLKVAMKRY 353


>gi|227542503|ref|ZP_03972552.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227181701|gb|EEI62673.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 469

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 108/337 (32%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +++ + + + + + G       PV  AL+I    WP  +    +    +   A++  
Sbjct: 68  LRLLVIGVTVYAGWRILGALWQGVLPVALALLISSVLWPPAAWL-KRHRLPAWLAALVTM 126

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V+  F   +  +      + + L  + V A Q               +WA E      
Sbjct: 127 ITVLGAFSAIIALIAPGVARQSQTLYFQSVDAIQRLQ------------LWAQEPPLSLK 174

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +                I               +     +I  FF  +DG      
Sbjct: 175 GEDFNRIFGEAVAWIQQQAGNIAGGVFAGLGAASSLLVLATITLIITFFVLKDGERFMPW 234

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +        +  ++       + +      ++A+ + +++G    +  +P  +AL  +
Sbjct: 235 ARAFTGRQVGWHLTELLTRCWNTLSNYIRVQALVALIDAVLIGLGLVVMKIPMALALATL 294

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   +P     ++ T      L+   +  A  + +   I   +    L P L    + 
Sbjct: 295 TFVAGFVPIVGAFVAGTVAVAIALVTMGLTKALMVLILILIVQQLEGNVLSPMLQSKAMN 354

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L        +  G    G+ G  +   + A +AV+ +
Sbjct: 355 LHPAVVILVVTVGGGLFGIAGALLAVPITATVAVLLR 391


>gi|319408624|emb|CBI82279.1| permease protein [Bartonella schoenbuchensis R1]
          Length = 403

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 118/351 (33%), Gaps = 11/351 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   ++ ++       P ++ +++ +   PI      K      F  ++ T
Sbjct: 47  KQVFFWLGTLIFFVIFMFVFGSVLLPFVAGIVLAYFLNPIVQLLE-KVGIRRVFGTILIT 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + ++ +F+  L  L      ++++ VS  + +            +    G +      + 
Sbjct: 106 LFIVVIFVAALTILIPIVSWQIQQFVSSGLPIYVSRIQNFLTESNFDWVGRYFGSDPNEL 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +  + L   S     ++ I  +     R G   ++    ++   +  F+   D   + +
Sbjct: 166 QTDIKVLLGQS-----SDFITSLLNSLLRSGKSIVNIFSLLVVAPVVAFYMLLDWQRMVE 220

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          + I   + + I     G   + +  G        + G+   + +G+
Sbjct: 221 AVDSWIPRDHLETVRSIFYEMDRAIAGFVRGQGTVCLILGGYYAIGLTITGLNFGLLIGM 280

Query: 247 ITAIMAMIPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ IP    +S       V+       N      + +   I  FI    L+P LVG
Sbjct: 281 FVGLISFIPYIGTMSGFILSGGVAWVQFYPDNWSRIVIVMVVFFIGQFIEGYILQPKLVG 340

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L       G  G+ +     A I V+ + ++     ++
Sbjct: 341 SSVGLHPVWLMFALFAFGSLFGFTGMLVAVPASAAIGVLVRFALHTYLNSQ 391


>gi|220921717|ref|YP_002497018.1| hypothetical protein Mnod_1725 [Methylobacterium nodulans ORS 2060]
 gi|219946323|gb|ACL56715.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 680

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/360 (14%), Positives = 107/360 (29%), Gaps = 22/360 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            +    +  ++  II+ +LYF +    P+  A+++ F  WP+      +     T    +
Sbjct: 25  PDRGFALPLLVAAIIVAALYFGREILIPIAIAVLLSFVLWPLVGLL-RRLPIGRTAAIGL 83

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKEL------------------VSKVVLANQHGIPVP 107
           A V+ + +  +    +          L                  V  +    +      
Sbjct: 84  AVVTCIGIVGLLAGVIGMQVADLGTGLPRYQRTIERKLENLKEGPVGSIAGYMRSIGRHL 143

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP-RFASRFGMIFLDYCLS 166
           +    +P       +     S P+         ++    D  P   A R     L    +
Sbjct: 144 QQAGSMPEDKDKPPVPRGATSEPRVQNPDKPVLVEVRERDLAPVELAERLLSPVLAPLAT 203

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              + + L F       +  +L  L                 + +   FL    +    G
Sbjct: 204 TGIVFVVLMFILAQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRFFLVQLGLNASFG 263

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + +G   WL GVPS +  G+ +A+M  +P         + + L    +      L     
Sbjct: 264 VAIGIGLWLIGVPSPILWGIFSALMRFVPYIGAFLSALLPLALAAAVDPGWNMVLATAAL 323

Query: 287 IELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   +V   + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 324 FLVLEPLVGHVIEPLLYGHSTGLSPFAVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 383


>gi|310815332|ref|YP_003963296.1| Lipocalin-related protein and Bos/Can/Equ allergen
           [Ketogulonicigenium vulgare Y25]
 gi|308754067|gb|ADO41996.1| Lipocalin-related protein and Bos/Can/Equ allergen
           [Ketogulonicigenium vulgare Y25]
          Length = 363

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 116/349 (33%), Gaps = 10/349 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q I       I L  LY + G   P +    I +   P+             +   I +
Sbjct: 13  KQAIYWLSAAAIFLALLYTVSGVLLPFVLGAAIAYLLDPVADRMERW-GIGRVWAVSIIS 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + LF + LL L    + +  +LV+ V    +      R                  +
Sbjct: 72  LVGVLLFTIGLLILVPTLINQALQLVNTVPSLVEQLTNWAR------DSFPELSDEQSQM 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +  + +      +    +        M  +   + +    +  F+   D   + + 
Sbjct: 126 RQTLNTTLTNIGNAIQSRGGELIGGLVGSAMSVVSIAMVLFIAPVVAFYLLLDWDRMVRH 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D L      A  ++I   + + + +   G  ++ +  G+       LAG+   + +G  
Sbjct: 186 VDDLIPLPRRAEVRRIFAEIDQTLSAFIRGQGLVCVVLGVFYAVTLMLAGLNFGLVIGFG 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP    +     +I L      G+  +   +     I  F+    L P L+GG 
Sbjct: 246 AGMISFIPYVGTLVGGVAAIGLALYQFWGDWLHVAIIVAIFLIGQFLEGNVLVPKLMGGS 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + L  +   F +       G +G+ +   + A+I V+ +  +   KE  
Sbjct: 306 VGLHPVWLIFAISVFGALFGFVGMLVAVPVAAIIGVLIRFGLQKYKEGP 354


>gi|291540406|emb|CBL13517.1| Predicted permease [Roseburia intestinalis XB6B4]
          Length = 462

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 99/336 (29%), Gaps = 17/336 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------------EESSTFLAVIAT 67
               L     P++  ++I +   PI                       + S       + 
Sbjct: 63  FWKKLSLILQPIIIGVVIAYLLNPIMKFLEGHLLKFLEPRMKSKCKAKKTSRGIAITGSL 122

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTK 125
           V ++ + ++ +  +       ++ +++      +        +++          +   K
Sbjct: 123 VFLVGICVLLVAAIVPSISASIQSMITSFPQEAKDLTKWVDEVTNGDTELASMIQQGVDK 182

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                ++             +  I           L+  + +I  +  +           
Sbjct: 183 ITDTVETFFEDDIFSKVQTYLTSITSGVIYGVKFVLNVIVGLIISVYVMADQEHFAGQAK 242

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + ++ + +         R   ++      G  + +   G++      +  +P  V + 
Sbjct: 243 KIVYAMFKPVRANVIVDTVRKSNEIFSGFISGKILDSAIIGVLAYIVLAIMKMPDTVLVA 302

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  +IP   P      S  +++  N        ++  +   I    + P ++G   
Sbjct: 303 VIIGVTNVIPFFGPFIGAVPSFIIIVLQNPIQGLYFLIFIVVLQQIDGNIIGPKILGSST 362

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L      F ++      G  G+ +G  LMA+I  +
Sbjct: 363 GLSAFWVVFAILVFGGLWGFPGMLLGVPLMAVIYYV 398


>gi|25027637|ref|NP_737691.1| hypothetical protein CE1081 [Corynebacterium efficiens YS-314]
 gi|23492919|dbj|BAC17891.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
          Length = 488

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 99/339 (29%), Gaps = 18/339 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R + + +     + + G       PV+ ALI+             K +      AV   
Sbjct: 60  LRILFIAVAAYVGWLILGQLWRGVLPVILALIVCTVLSTPNMWL-RKLKFPPALAAVTTI 118

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +            +      + + L  +V           +              + + +
Sbjct: 119 IIFFAAIAGVFWLIAPSIARQSQTLYYQVFDGILSVQLWLQGDPFNLDANDVDNFFNEVV 178

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q+                I         +     +++  +++  FFF +DG      
Sbjct: 179 GWLQNQ------------AGTIAGEIFSGLGMATSVIITLGVVLVLTFFFLKDGDRFLSW 226

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                      +  ++       +        I++  + + +G    + GVP   AL VI
Sbjct: 227 GRQAVGETSGWHLTELLTRAWNTLAGFIRAQAIVSAVDAVFIGIGLVIVGVPMAFALSVI 286

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   IP     +      I  L+      A  + +       +    L P L    + 
Sbjct: 287 TFVAGFIPIVGAFTAGALAVIVALVSLGFTEAVIVLIIVVAVQQLEGNILSPILQSKAMN 346

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  +     +  G    G++G F+   + A+IAV ++  
Sbjct: 347 LHPVIVLLSVTVGGTLFGIIGAFLAVPVAAMIAVAFRYF 385


>gi|312796207|ref|YP_004029129.1| hypothetical protein RBRH_03616 [Burkholderia rhizoxinica HKI 454]
 gi|312167982|emb|CBW74985.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 414

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 147/346 (42%), Gaps = 3/346 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q   + ++  + L  ++ L  FF  +    I+     P+  +  ++    +   A+   
Sbjct: 34  NQRGFQVLLYAVSLALVWILLPFFGAIFWGAILAILFQPLQRTLTARLGNRANLAALATL 93

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + I+P+  +    + E+     ++     +     +             L    L
Sbjct: 94  SLCVLVVILPVSLMIGTLVQEVSFAYEQIKTGQWNVTLYFQKAVGALPAFAQHWLNDVGL 153

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  QSL+             F+   A   G   L + +    M+  +FF  RDG +IS++
Sbjct: 154 ADMQSLQAKLTEGAAR-ISQFVAAQAVEIGQNTLQFAVGFGIMLYMVFFLLRDGSAISRR 212

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L  ++ +K+      V+R+T  G   +A  +GL+ G  +++ G+   +  G +
Sbjct: 213 IREAVP-LADSHKQKLLGKFTTVVRATVKGNIAVAAVQGLLGGLIFFILGISGSLLWGTL 271

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+++++P     + +   +IY L+ G ++ A  L L+ ++ +  VD  LRP LVG   K
Sbjct: 272 MALLSLLPAIGSALVWGPAAIYFLLAGPLWKAVVLGLFCSLVIGGVDNILRPILVGKDTK 331

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LP        VGG+ T G+ G  IGP++ AL    W  S++  ++ 
Sbjct: 332 LPDWVVLISTVGGMATFGINGFVIGPLIAALFIACWDISVLIARDE 377


>gi|304410810|ref|ZP_07392427.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|307305019|ref|ZP_07584769.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
 gi|304350707|gb|EFM15108.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|306912421|gb|EFN42845.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
          Length = 360

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 160/348 (45%), Positives = 224/348 (64%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P       L 
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWIGEWLTLQ 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG  
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEQ 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|319795203|ref|YP_004156843.1| hypothetical protein Varpa_4567 [Variovorax paradoxus EPS]
 gi|315597666|gb|ADU38732.1| protein of unknown function UPF0118 [Variovorax paradoxus EPS]
          Length = 377

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/339 (22%), Positives = 136/339 (40%), Gaps = 3/339 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G+   ++  + +  ++ L  FF  VL  + +     P+Y   + K        A+   
Sbjct: 7   QRGVFIALLAAVTVAFVWVLLPFFGAVLWGVALAILFTPLYKWLLKKMRGKPNAAALATL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + I+PL  +    + E+  +   +     +     + + D     W   L  +  
Sbjct: 67  AICLFIVILPLAMVGVSLVQEIALVTQNIRSGQINFAAYFQQILDASP-QWLLSLVERFN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      +         I   A   G    D+ +S   M+  L+F  RDG ++S+ 
Sbjct: 126 LGDMAAWQARISTAAGQASQIIASQALAIGQNTFDFIVSFFVMLYLLYFLVRDGSTLSKT 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L   +   +      VIR+T  G   +AI +G + G A+W  GV   +   V+
Sbjct: 186 MRDAVP-LAKPHTHYLLNKFTTVIRATVKGNVAVAIAQGTIGGLAFWFLGVQGALLWAVL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  GA + +  V+IY L  G+ +    L   G   + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAVGAALIWGPVAIYFLATGHFWQGGVLIFVGVFVIGLVDNILRPVLVGKDTQ 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P        +GG+   G+ G  IGPV+ AL    W   
Sbjct: 305 MPDYIVLMSTIGGMAIFGINGFVIGPVIAALFMAAWSLF 343


>gi|170696533|ref|ZP_02887657.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170138580|gb|EDT06784.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 372

 Score =  146 bits (368), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 175/347 (50%), Gaps = 5/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 29  ERVKKQRAASLALYIGLVLLALWVVRDFLPVVGWAAVLAIALWPLLRKVEGSRWLTGRTT 88

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A + T+++  L ++P+       + E  +L      A ++GI +P ++  +P G   +
Sbjct: 89  LIAAVLTLAIALLVVLPVGVGIAQALREAHDLTDWFKAAQENGIAMPDFIHRLPFGAHQA 148

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W +    P      +   L +     +      FG   +       FM++ LF  ++ 
Sbjct: 149 EAWWQAYLTPPLRDSAAMKGLHS---TTVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQA 205

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S  L    +  F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P 
Sbjct: 206 GPRLSGALARGLQRGFGEDGAQLVQRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPH 265

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L +ITAI AM+P  API+F+  +++L  +G++ +A  L ++G+I +F+ +  +RP L
Sbjct: 266 VALLALITAIAAMLPFCAPITFSLAALWLFSQGSVASAIGLLVFGSIVVFVAEHFVRPVL 325

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W + + 
Sbjct: 326 IGSSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTDLVQ 372


>gi|227534733|ref|ZP_03964782.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187489|gb|EEI67556.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 399

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 111/339 (32%), Gaps = 7/339 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+      F      P+LSA  + +   PI      K   S     ++  + V+   +
Sbjct: 37  VSFLFAPVATFFSTLLIPILSAGFLFYLFNPIVKLLQ-KFHISRNISILLIFLVVIGALV 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + +    + ++ + V+ +    +         S        +      +    +   
Sbjct: 96  LVFMAVLPNLIYQVTQFVTNIPDFLKGVRLFISKASHYTWYQRLN------IGKYVASLQ 149

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +S + + +  +                  +SII + + LF+F +DG +    +  +  H 
Sbjct: 150 ISPSKVLSKVLGGFSTGLPTVIGSVASMMISIITIPVMLFYFLKDGENFVPSIQKMLPHR 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   +   +     G  I  +  G      Y + G+P    LG I  I+ +IP
Sbjct: 210 YHEEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVTIIP 269

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +           + +   I        + P ++G  + +  L     
Sbjct: 270 YLGPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIIL 329

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      GLLG  +     A+I  +        + ++E
Sbjct: 330 LMVAGNLWGLLGTILAVPTYAVIKTVVTYLYELYRFHQE 368


>gi|299821429|ref|ZP_07053317.1| possible permease [Listeria grayi DSM 20601]
 gi|299817094|gb|EFI84330.1| possible permease [Listeria grayi DSM 20601]
          Length = 396

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 58/364 (15%), Positives = 128/364 (35%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILV--------------SLYFLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  I+ +                  LK   AP++ A I+ +   P+
Sbjct: 9   KQFFIENKFVLALLIFLIVALDILLLTKISFIFKPVGVILKTVAAPIILAGILYYLFNPV 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++   IV   F+      ++  L++K            
Sbjct: 69  VDWLEKH-KWKRGWSIGLLYLVIIGALIVLFSFVVPAVKDQIASLLNKFPDYWDKLTNEL 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         E    +LS          T    + ID I  F      + L      
Sbjct: 128 DNFSKTGLFDQIRERLNSNLSEITKTISSKGTGFVNSAIDGIGSFVGTVTEVVLAIVT-- 185

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
                 LF+  +DG  + + +  L      A+ +++ +     I S   G  I++   G+
Sbjct: 186 --TPFVLFYLLKDGKKLPEFILKLLPVNARAHSRQVLKEANHQISSYIRGQIIVSFCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLYIGYLIIGLPYGLTLAIIAAFTSVVPYLGPAIAITPAIIIAIVVSPWLLLKLVVVWVL 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ V+   +  
Sbjct: 304 VQLLEGKFISPQIMGKSLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLRVVVMHTFD 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|328958006|ref|YP_004375392.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
 gi|328674330|gb|AEB30376.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
          Length = 401

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 111/326 (34%), Gaps = 5/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL     PV+ A ++ +   P+      K +           + +  L +  +  L    
Sbjct: 55  FLSIIGLPVILAGVLYYLVNPLVDWMERK-KIPRLLGITWIFIVIGALIVWGITTLIPII 113

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +   ++        + +                  +   LS   +  + + +      
Sbjct: 114 QEQTISIIGNWPTYWDNIVSQIDSWLR----SDVLSEFQTRLSDFNTNLMSNVSDQADGF 169

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +               +  ++II M   LF+  +DG ++   +  +          ++  
Sbjct: 170 VGSTFASIGSVVGALTNVIIAIITMPFILFYLLKDGKNLPYHVMKIVPSKMRVSMYQLLS 229

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I     G  ++A   GL+    + + G+   V LGV+   + ++P       T  
Sbjct: 230 EINMQISQYIRGQLMVAFFVGLMFWLGFAIIGLEYAVTLGVLAGFLNLVPYLGSFLATVP 289

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + +  +      + +  AIE  I  + ++P ++G  +++  L     L+   +  G+
Sbjct: 290 AIVIALVDSPSMLIKVLIVFAIEQTIEGRVIQPQILGNNLEVHPLTIIIVLLSAGKIFGV 349

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ +G    A++ VI        K+
Sbjct: 350 PGVILGIPGYAVLKVIVVHFFRWYKD 375


>gi|149179846|ref|ZP_01858351.1| hypothetical protein BSG1_02485 [Bacillus sp. SG-1]
 gi|148852038|gb|EDL66183.1| hypothetical protein BSG1_02485 [Bacillus sp. SG-1]
          Length = 359

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 106/322 (32%), Gaps = 6/322 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P++   I+ +   P+ +    K         ++  ++V+ L    + +     
Sbjct: 36  LVTALFGPIVLGGILYYLFRPLVNLLAKKM--PRAVAILLLYLAVIGLITGVVFYAGPIL 93

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  L+       +        L            +               T      
Sbjct: 94  QRQISSLIENTPQLIEKFRQTLLNLQQ----SEWVSRFQNGDRFSLEDITNRLTDYLNEA 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +            +  + II +   L++  +DG  +S ++  L         KK+  
Sbjct: 150 ASTLGSNLMNILSTITNIIVLIILIPFVLYYMLKDGNKLSGKILKLVPKKHEEEGKKVLS 209

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  I++   G+++   Y + G+   + + ++T +  +IP   P+  +  
Sbjct: 210 DMDDALSSYIQGQVIVSFCVGVLVYIGYLIIGLDYSLVISILTMLTNVIPFIGPLISSIP 269

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +        A  + +   I   I    + P ++G  + +  L     LV   +  G 
Sbjct: 270 AIIVAFLQEPIMALWVIVVILIVQQIEGNLISPQVMGRKLDIHPLTIILLLVAAGKFAGF 329

Query: 326 LGLFIGPVLMALIAVIWKESIM 347
           LGL +     A++ VI+     
Sbjct: 330 LGLLLAVPAYAVLKVIFIHVYR 351


>gi|253681437|ref|ZP_04862234.1| permease [Clostridium botulinum D str. 1873]
 gi|253561149|gb|EES90601.1| permease [Clostridium botulinum D str. 1873]
          Length = 368

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 113/336 (33%), Gaps = 1/336 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I+  S   +     P   A  I +   P+   F  K      F  +I  + ++    + +
Sbjct: 30  ILAGSFGVILAILTPFFWAFGIAYILNPLMMYFEKKFNFKRNFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  + +L + +    +                  + L         ++     
Sbjct: 90  TIISPAIINNVDQLANNIPTYVRKTQTWFYETITRFNLSNNTTLIQFANKSLSNITNALT 149

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           T L  + ++     A      FL      I  +  L        +I   L S+ +     
Sbjct: 150 TSL-NSFLNVALTKAIDITSSFLKMIFGFIISVYILKDKEVFQKNIKDFLYSIFKKKSVD 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +      V  +     +G +I ++  GL+      +   P  + + ++  +  MIP   
Sbjct: 209 SFLIFGCEVNTIFSQYIIGKSIDSLIIGLLCAIGLGILKTPYVLLISLLVGLTNMIPYFG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ + +  +   A  +F++  +        L P ++G  + +        +  
Sbjct: 269 PFIGMIPAVLITLFSSPIKALWVFIFILVLQQFDGWVLGPKILGDKVGVSPFWIILAITV 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  T G+LG+F+G  ++A+I  + ++ I+    NK 
Sbjct: 329 GGGTFGVLGMFLGVPIIAVIKTLLQKFILKRLNNKN 364


>gi|293602078|ref|ZP_06684532.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292819533|gb|EFF78560.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 374

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 155/352 (44%), Positives = 219/352 (62%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   + +    +   
Sbjct: 2   QPVLPAYLIARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVVRCGGRTAVA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +A + V+ + IVP+     Y + E     +  + AN+HG+ VP W++ +P        
Sbjct: 62  ASLALLMVIVVLIVPMSLALSYAIKEASTFFAWAIAANRHGVAVPNWITSMPVVGERLGQ 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +               +    +  I R             L+++FM+I LFF Y+DG 
Sbjct: 122 YWESYIGEPHALGALVEAVSGEHLGNIYRMVLAATGNVFQLLLTVLFMLITLFFVYKDGI 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  QLD LGE + PA W++ SR+VP  I ST  GM +IA+GEGLVLG AYW+AGVPS V
Sbjct: 182 RMVAQLDVLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGLVLGVAYWVAGVPSPV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LVG
Sbjct: 242 LLGVVTGFMALIPGGAPLSFTLVSLYLVGSGHVVAGIALMVWGSVELFIVDKTLRPRLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GP+KLPFLPTFFGLVGGV+TMGL+GLF+GPVLMAL+  +W+E +    + ++
Sbjct: 302 GPVKLPFLPTFFGLVGGVKTMGLVGLFVGPVLMALLVAVWREWVHHEVQERD 353


>gi|39933625|ref|NP_945901.1| hypothetical protein RPA0548 [Rhodopseudomonas palustris CGA009]
 gi|39647471|emb|CAE25992.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           CGA009]
          Length = 386

 Score =  146 bits (368), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 150/351 (42%), Gaps = 3/351 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +       +++    +  + L   ++ VL  ++I     P+               A+++
Sbjct: 4   SENKFFILLLVVATGLFGWILWPLYSAVLWGMVIAILFAPLNRGLNRAFGFRRNLAALMS 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++ + ++P+  L      E   + +K+   N   +   R L       W  +L ++ 
Sbjct: 64  VTIIVLMVLLPMSLLGAALAREAAGMYTKIESGNLDLLKTMRELLAARP-DWLGDLLSRF 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      +     G  ++   A   G    D+ +++  M+  LFF  RDG  ++ 
Sbjct: 123 GVGNLADIQQRLSAALLRGSQYLAGQALDIGQSTFDFTVNLFVMVYLLFFLLRDGDLLAA 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L   +  ++      VIR+T  G  +IA+ +G + G A+++ G+   +   V
Sbjct: 183 RIRRATP-LGVDHQTRLLDKFTVVIRATVKGNMLIALIQGALGGLAFYVLGISGALMWAV 241

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P     I +  +++YL+  G++++   L +WG + + +VD  LRP LVG   
Sbjct: 242 VMAFLSLLPAVGAGIVWLPMALYLIASGSVWHGVGLIVWGMLVIGMVDNFLRPILVGKDT 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           ++P        +GG+   GL G  IGPV+ A+    W    +A ++  +  
Sbjct: 302 RMPDYVVLISTLGGLEVFGLNGFVIGPVIAAMFIATWDIYSIAREDAGDTP 352


>gi|310815720|ref|YP_003963684.1| hypothetical protein EIO_1241 [Ketogulonicigenium vulgare Y25]
 gi|308754455|gb|ADO42384.1| putative membrane protein [Ketogulonicigenium vulgare Y25]
          Length = 374

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/338 (20%), Positives = 140/338 (41%), Gaps = 3/338 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              M++ + +  ++ +  F+  VL A+I+     P++   +       +  A  +T++ +
Sbjct: 11  FVVMLIIVTIAFVWLMLPFYGAVLWAIILAILFNPLHRRLVRGLGGRRSLAAAFSTLACI 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           C+ ++P   +      E   L ++V   +   I +   +           L   +LS   
Sbjct: 71  CIVVIPGSMVLAALAREAGSLYARVSAPDFDAISILERVHAGMPSYLVEALSAFNLSEFD 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++     FL  +    +   A   G       + +  M+  LFF +RDG  ++  +   
Sbjct: 131 QIQTRLTGFL-GDAAQTVATGALNIGQSTAQLVIGLGVMLYVLFFMFRDGSQLAIIIRRA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     + + R    V++ T  G  IIA+ +G + G  + L G+ +    GV+ A++
Sbjct: 190 SP-LTDYQTEHVLRKFTTVVKYTVRGNVIIAVIQGAIGGITFLLLGIEAAFLWGVLMAVL 248

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P     + ++  + YL + G +     L   G + +  +D  LRP LVG   KLP  
Sbjct: 249 SLLPAVGAFLVWSPAAAYLFLSGQVIQGFILVAVGVVIISTIDNILRPPLVGQGTKLPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                 +GG+   G+ G  IGP++ AL   +W      
Sbjct: 309 MVLVSTLGGLALFGVNGFVIGPLIAALFVALWSLYTDQ 346


>gi|329923748|ref|ZP_08279143.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|328941114|gb|EGG37416.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 379

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 118/335 (35%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++      +K    P++ + I+ +   P+      + +    +  +I  + +  +  
Sbjct: 40  ISFVLHPIAVLIKTIVLPIILSGILYYLLNPLVDMMEKR-KIKRGWSILILYLLIAGILT 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +L +      ++  L+      ++        L+         E    +         
Sbjct: 99  VVVLAVIPVLRTQIMSLIDNFPTYSEKVRQQFEELTGSQLYSQLQEAVNINSQEWWGTIT 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T +  +    +  F   F  I L        +   LF+  +DG  + Q++ S     
Sbjct: 159 QKATEILNSTWSKVGGFLGAFTEIVLSIIT----VPFVLFYMLKDGKKLPQKILSFLPTQ 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +    + + +   I S   G  I+++  G++L   Y + G+   + L +I +  +++P
Sbjct: 215 SRSGILHVLQDINHQISSFIRGQIIVSVCIGILLYIGYMIIGLDYALILAIIASFTSVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++ + +  +      +     I   I  K + P ++G  +K+  +   F 
Sbjct: 275 YLGPAIAITPALIVALVTSPVMLLKMVAVWTIVQLIEGKFISPQIMGKTLKIHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++      G++G+ +     A++ V         K
Sbjct: 335 ILTAGNLFGVVGILLAVPGYAVLKVCVTHIFEWFK 369


>gi|257898989|ref|ZP_05678642.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257836901|gb|EEV61975.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 372

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 7/330 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPIVKLLM-KAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 99  VQQISSLASNMPDFIKQVENWLKEVAELPVFKEVD------INKYFEQLDISYGTIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 153 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 213 QLNKTLANYISGQAIECLFVGTFTFLGYMIIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + I  +   A    L   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AFLVTIFNDPIKALLCCLVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LG+F+G    A+   I    I  IKE+K+ 
Sbjct: 333 LGIFLGVPFYAICKTIISYIIKIIKEDKQN 362


>gi|325569862|ref|ZP_08145856.1| permease [Enterococcus casseliflavus ATCC 12755]
 gi|325156985|gb|EGC69153.1| permease [Enterococcus casseliflavus ATCC 12755]
          Length = 394

 Score =  145 bits (367), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 114/336 (33%), Gaps = 6/336 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   PI    +   +    F  ++  + ++   I+ 
Sbjct: 55  FLFAPIGTFFSTLFAPVLIAGFLYYLLNPIVLFLMKTTKIKRLFAVILVLLLLVAAIILI 114

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + +    + ++  L   +    ++       ++D P            ++       LS
Sbjct: 115 FVSVIPNLVSQITSLAENIPTFAKNMESWISRIADDPFFKQID------IAQQLENLNLS 168

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L    +  +               + I+ +   LF+  +DG  +   L ++      
Sbjct: 169 YGSLLQQFLSGLSTSLGSIVSTIASATMIIVTVPFILFYMLKDGEKLVPNLKTVFPERRR 228

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + K + +   G  I  I         YW+ GV      GVI  +  +IP  
Sbjct: 229 DQIVGLLGDLNKTLSNYISGQAIECIFVATFTFIGYWMIGVNYAFLFGVIAGVTNLIPYL 288

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + +    F A    +   +   +    + P ++G  + +  L     L+
Sbjct: 289 GPYLGLIPAVLVTVFDEPFRALLCCIVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLL 348

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 GLLG+F+G    A+   I    +  IK++K
Sbjct: 349 VAGNLAGLLGIFLGVPFYAICRTIVVFIVRLIKDDK 384


>gi|262401678|ref|ZP_06078244.1| predicted permease [Vibrio sp. RC586]
 gi|262352095|gb|EEZ01225.1| predicted permease [Vibrio sp. RC586]
          Length = 361

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI++    K        A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHAWLDKKLPSHHNLSA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +      G I        +  G+  +  
Sbjct: 66  FLSCVVLTVIVVIPLLFIFGAIVQQGSKFSQNLYAWVTQGGIQEVLNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + ++   M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGTNLVSISAKILGDATSFVMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLNEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G    A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLIGETSWAIFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++  ++
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRSFLDQQDNS 361


>gi|15924349|ref|NP_371883.1| hypothetical protein SAV1359 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926939|ref|NP_374472.1| hypothetical protein SA1192 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282975|ref|NP_646063.1| hypothetical protein MW1246 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483552|ref|YP_040776.1| hypothetical protein SAR1371 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49486202|ref|YP_043423.1| hypothetical protein SAS1299 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57650363|ref|YP_186247.1| hypothetical protein SACOL1395 [Staphylococcus aureus subsp. aureus
           COL]
 gi|82750951|ref|YP_416692.1| hypothetical protein SAB1215 [Staphylococcus aureus RF122]
 gi|87160805|ref|YP_493951.1| hypothetical protein SAUSA300_1254 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195085|ref|YP_499885.1| hypothetical protein SAOUHSC_01358 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267847|ref|YP_001246790.1| hypothetical protein SaurJH9_1420 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393910|ref|YP_001316585.1| hypothetical protein SaurJH1_1448 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221483|ref|YP_001332305.1| hypothetical protein NWMN_1271 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979678|ref|YP_001441937.1| hypothetical protein SAHV_1347 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509525|ref|YP_001575184.1| hypothetical protein USA300HOU_1293 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140615|ref|ZP_03565108.1| hypothetical protein SauraJ_03131 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253317046|ref|ZP_04840259.1| hypothetical protein SauraC_13104 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253733393|ref|ZP_04867558.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|255006147|ref|ZP_05144748.2| hypothetical protein SauraM_06750 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425425|ref|ZP_05601850.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428085|ref|ZP_05604483.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430716|ref|ZP_05607098.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433476|ref|ZP_05609834.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436317|ref|ZP_05612364.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257795586|ref|ZP_05644565.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258413395|ref|ZP_05681671.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258420499|ref|ZP_05683441.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258424790|ref|ZP_05687664.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|258434729|ref|ZP_05688803.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258444695|ref|ZP_05693024.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258447470|ref|ZP_05695614.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258449311|ref|ZP_05697414.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258451757|ref|ZP_05699781.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258454691|ref|ZP_05702655.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262052169|ref|ZP_06024376.1| hypothetical protein SA930_0519 [Staphylococcus aureus 930918-3]
 gi|282892850|ref|ZP_06301085.1| membrane protein YrrI [Staphylococcus aureus A8117]
 gi|282903939|ref|ZP_06311827.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905704|ref|ZP_06313559.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908671|ref|ZP_06316492.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282910940|ref|ZP_06318743.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914148|ref|ZP_06321935.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282916620|ref|ZP_06324378.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282919070|ref|ZP_06326805.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282920627|ref|ZP_06328348.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282924253|ref|ZP_06331927.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282928918|ref|ZP_06336507.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|283770426|ref|ZP_06343318.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283958123|ref|ZP_06375574.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284024360|ref|ZP_06378758.1| hypothetical protein Saura13_07200 [Staphylococcus aureus subsp.
           aureus 132]
 gi|293501175|ref|ZP_06667026.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510137|ref|ZP_06668845.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|293526728|ref|ZP_06671413.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|294848364|ref|ZP_06789111.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A9754]
 gi|295406303|ref|ZP_06816110.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8819]
 gi|295427873|ref|ZP_06820505.1| UPF0118 membrane protein YrrI [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275470|ref|ZP_06857977.1| hypothetical protein SauraMR_03960 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207987|ref|ZP_06924418.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297244532|ref|ZP_06928415.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8796]
 gi|297591166|ref|ZP_06949804.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912071|ref|ZP_07129514.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381064|ref|ZP_07363718.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|13701156|dbj|BAB42451.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247130|dbj|BAB57521.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204414|dbj|BAB95111.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241681|emb|CAG40369.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49244645|emb|CAG43076.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57284549|gb|AAW36643.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|82656482|emb|CAI80904.1| probable membrane protein [Staphylococcus aureus RF122]
 gi|87126779|gb|ABD21293.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202643|gb|ABD30453.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740916|gb|ABQ49214.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946362|gb|ABR52298.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374283|dbj|BAF67543.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721813|dbj|BAF78230.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368334|gb|ABX29305.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728661|gb|EES97390.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|257271882|gb|EEV04020.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274926|gb|EEV06413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278844|gb|EEV09463.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281569|gb|EEV11706.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284599|gb|EEV14719.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|257789558|gb|EEV27898.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257839959|gb|EEV64427.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257843447|gb|EEV67854.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257844954|gb|EEV68994.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257849090|gb|EEV73072.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257850188|gb|EEV74141.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257853661|gb|EEV76620.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257857299|gb|EEV80197.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257860588|gb|EEV83412.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257863074|gb|EEV85838.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159913|gb|EEW44950.1| hypothetical protein SA930_0519 [Staphylococcus aureus 930918-3]
 gi|282313640|gb|EFB44033.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316880|gb|EFB47254.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C427]
 gi|282319107|gb|EFB49459.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           D139]
 gi|282322216|gb|EFB52540.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282325545|gb|EFB55854.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327489|gb|EFB57781.1| sporulation integral membrane protein YtvI [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330996|gb|EFB60510.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282589427|gb|EFB94517.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282594289|gb|EFB99276.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282595557|gb|EFC00521.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282764847|gb|EFC04972.1| membrane protein YrrI [Staphylococcus aureus A8117]
 gi|283460573|gb|EFC07663.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283790272|gb|EFC29089.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285817037|gb|ADC37524.1| UPF0118 membrane protein YrrI [Staphylococcus aureus 04-02981]
 gi|290920800|gb|EFD97863.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291096180|gb|EFE26441.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291467081|gb|EFF09599.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M809]
 gi|294825164|gb|EFG41586.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A9754]
 gi|294968891|gb|EFG44913.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8819]
 gi|295128231|gb|EFG57865.1| UPF0118 membrane protein YrrI [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887230|gb|EFH26132.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297178562|gb|EFH37808.1| UPF0118 membrane protein YrrI [Staphylococcus aureus A8796]
 gi|297576052|gb|EFH94768.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300886317|gb|EFK81519.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|302332974|gb|ADL23167.1| putative transporter [Staphylococcus aureus subsp. aureus JKD6159]
 gi|302751190|gb|ADL65367.1| putative transporter [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304340373|gb|EFM06313.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312438241|gb|ADQ77312.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315131163|gb|EFT87147.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315194277|gb|EFU24670.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315196382|gb|EFU26734.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320140309|gb|EFW32167.1| hypothetical protein HMPREF9528_01424 [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143918|gb|EFW35690.1| hypothetical protein HMPREF9529_00703 [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 402

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 121/330 (36%), Gaps = 5/330 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +   K   AP++ +LI+ +   PI +     +         I  ++V+ +  + +  L 
Sbjct: 56  FIIVFKTIAAPIIVSLILFYLFNPIVNMMERYR-IPRVAGISIIYLAVVGVITLIVNLLI 114

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  LV       +  I     +++          +   ++   +        + 
Sbjct: 115 PIIGSQVDSLVKNSPQYLEKLINSIDKIAN----NTFFSSYYSQINDWLNSLPKKIPSML 170

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +   D      + F     +  + I+     LFF  +DG    +   ++    F   +  
Sbjct: 171 SEFTDGFGSKIATFAETIANIGVVIVTTPFVLFFMLKDGHHFKEFSTNIMPPKFRKDFHD 230

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   + S   G  I++   G++L   Y + G+   + L  I A+ +++P   P   
Sbjct: 231 LLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYSLVLASIAAVTSVVPYLGPTIA 290

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            + +I +    + +    L +   +  F+    + P ++G  +K+  L   F L+   + 
Sbjct: 291 ISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHPLTIIFILLCAGKL 350

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G++G+ +G    A++ V+        K  
Sbjct: 351 LGIVGVILGIPGYAILKVLVTHLFQLFKRR 380


>gi|260771194|ref|ZP_05880121.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|260613791|gb|EEX38983.1| predicted permease [Vibrio furnissii CIP 102972]
 gi|315179200|gb|ADT86114.1| Predicted permease [Vibrio furnissii NCTC 11218]
          Length = 361

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 145/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         +K +   ++ A II    +PI+    +K        +
Sbjct: 6   KISSSHWVLIVALLAAAFTCYLLVKPYVNSIVMAFIISLLMFPIHEKLEAKLPSHKNLAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++ + +  + ++PLLF+F   + +  +    V     HG I        +  G+  +  
Sbjct: 66  LLSCIILTFIIVIPLLFVFGAIVQQGSKFSQNVYQWVTHGGIQTVFNHPWVVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                 L T+    +   +++      ++ ++ + M+  LFF  RD  
Sbjct: 126 YLPFDEIQPQQIAQKVGQLATSFGSNLVGISAKILGDATNFIMNFLLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   K+   + +V +S  +G  + AI +G   G   W+AG P   
Sbjct: 186 KIITAIRHILP-LSRSQEDKLLSEIEQVSKSAVMGSFLTAIAQGAAGGFGMWMAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYL + G+   A  L +W    +  +D  LRP L+ 
Sbjct: 245 WGTMMGFASFIPLVGTALIWIPATIYLFLIGDTTWAIFLGVWSVAVVGSIDNLLRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K    +  ++
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLNRQDNS 361


>gi|116495246|ref|YP_806980.1| permease [Lactobacillus casei ATCC 334]
 gi|116105396|gb|ABJ70538.1| Predicted permease [Lactobacillus casei ATCC 334]
          Length = 392

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 111/339 (32%), Gaps = 7/339 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+      F      P+LSA  + +   PI      K   S     ++  + V+   +
Sbjct: 30  VSFLFAPVATFFSTLLIPILSAGFLFYLFNPIVKLLQ-KFHISRNISILLIFLVVIGALV 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + +    + ++ + V+ +    +         S        +      +    +   
Sbjct: 89  LVFMAVLPNLIYQVTQFVTNIPDFLKGVRLFISKASHYTWYQRLN------IGKYVASLQ 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +S + + +  +                  +SII + + LF+F +DG +    +  +  H 
Sbjct: 143 ISPSKVLSKVLGGFSTGLPTVIGSVASMMISIITIPVMLFYFLKDGENFVPSIQKMLPHR 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   +   +     G  I  +  G      Y + G+P    LG I  I+ +IP
Sbjct: 203 YHEEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVTIIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +           + +   I        + P ++G  + +  L     
Sbjct: 263 YLGPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIIL 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      GLLG  +     A+I  +        + ++E
Sbjct: 323 LMVAGNLWGLLGTILAVPTYAVIKTVVTYLYELYRFHQE 361


>gi|160877112|ref|YP_001556428.1| hypothetical protein Sbal195_4008 [Shewanella baltica OS195]
 gi|160862634|gb|ABX51168.1| protein of unknown function UPF0118 [Shewanella baltica OS195]
 gi|315269316|gb|ADT96169.1| protein of unknown function UPF0118 [Shewanella baltica OS678]
          Length = 360

 Score =  145 bits (367), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 160/348 (45%), Positives = 224/348 (64%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P       L 
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG  
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGQQ 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|261406702|ref|YP_003242943.1| hypothetical protein GYMC10_2865 [Paenibacillus sp. Y412MC10]
 gi|261283165|gb|ACX65136.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 379

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 118/335 (35%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++      +K    P++ + I+ +   P+      + +    +  +I  + +  +  
Sbjct: 40  ISFVLHPIAVLIKTIVLPIILSGILYYLLNPLVDMLERR-KIKRGWSILILYLLIAGILT 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +L +      ++  L+      ++        L+         E    +         
Sbjct: 99  VVVLAVIPVLRTQIMSLIDNFPTYSEKVRQQFEELTGSQLYSQLQEAVNINSQEWWGTIT 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T +  +    +  F   F  I L        +   LF+  +DG  + +++ S     
Sbjct: 159 QKATEILNSTWSKVGGFLGAFTEIVLSIIT----VPFVLFYMLKDGKKLPRKILSYLPTQ 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +    + + +   I S   G  I+++  G++L   Y + G+   + L +I +  +++P
Sbjct: 215 SRSGILHVLQDINHQISSFIRGQIIVSVCIGILLYIGYMIIGLDYALILAIIASFTSVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++ + +  +      +     I   I  K + P ++G  +K+  +   F 
Sbjct: 275 YLGPAIAITPALIVALVTSPVMLLKMVAVWTIVQLIEGKFISPQIMGKTLKIHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++      G++G+ +     A++ V         K
Sbjct: 335 ILTAGNLFGVVGILLAVPGYAVLKVCVTHIFEWFK 369


>gi|320155419|ref|YP_004187798.1| putative permease [Vibrio vulnificus MO6-24/O]
 gi|319930731|gb|ADV85595.1| predicted permease [Vibrio vulnificus MO6-24/O]
          Length = 361

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 145/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+  F SK  +     +
Sbjct: 6   KISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++ V +  + +VPLLF+F   + +             HG I        I  G+     
Sbjct: 66  LLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGLKLVNE 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +            L T+    +   +++      ++ +    M+  LFF  RD  
Sbjct: 126 YLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   K+   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K   ++  ++
Sbjct: 305 GSAGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDNS 361


>gi|315641191|ref|ZP_07896268.1| permease [Enterococcus italicus DSM 15952]
 gi|315482958|gb|EFU73477.1| permease [Enterococcus italicus DSM 15952]
          Length = 379

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 108/328 (32%), Gaps = 6/328 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    F PVL A  + +   P+ S    +          +  + ++   ++ ++ +    
Sbjct: 40  FFSTLFIPVLIAGFLYYLLNPVVSLLTERFHFKRILAIALVFILLIVALVLIVVSVIPNL 99

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ +L + +             +S               +        LS   +  N 
Sbjct: 100 VNQIAQLATNIPSFVSDVESWLYNISQTEWLKKVD------VMEELDKFNLSYGSILQNF 153

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +            +  + +I     LF+  +DG      ++ +      +    +  
Sbjct: 154 LSGLSSSLGSIVSTIANAAMIVITAPFILFYMLKDGHKFVPNVEKVLSPKRSSQVSDLMG 213

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      YWL GV      GVI  +  +IP   P      
Sbjct: 214 QLNKTLSNYISGQAIECLFVGTFTFLGYWLIGVDFAFLFGVIAGLANLIPYLGPYFGLLP 273

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + I  + F A    +   +   +    + P ++G  + +  L     L+      GL
Sbjct: 274 AVLVTIFNDPFKALLCCIVVLVVQQLDGNIIYPNVIGKSLAIHPLTIIIVLLVAGNLAGL 333

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           LG+F+G    A+   I       I++ +
Sbjct: 334 LGIFLGVPFYAICRTIIVFVYKMIQDAR 361


>gi|83858202|ref|ZP_00951724.1| hypothetical protein OA2633_01846 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853025|gb|EAP90877.1| hypothetical protein OA2633_01846 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 380

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/350 (22%), Positives = 150/350 (42%), Gaps = 4/350 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +     +  +  + + + ++ ++ ++GF +P+  A +      P++         SS+
Sbjct: 20  MSDRQALQRVFIVLLALGVSVIFIWMIRGFLSPLFMAAVFAMFLNPVHRFLKPITFGSSS 79

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V  + + ++PL  +      +  ++   V    Q  I + R         W  
Sbjct: 80  AAAGLVLVLAVFVVLIPLTAILALVADQAVQVTGTVAPWLQDQIRLIREGGIEALPDWLP 139

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + + L+  Q           +N   ++     +         L ++ M+ ALFFF   
Sbjct: 140 --FRESLAPYQQDITNQAAQFASNAGGWLVDGLRKATSGTFGAFLDLVVMLFALFFFLTR 197

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S+++    L           +       IR+T  G  +IAI +G++ G A  LAGVP 
Sbjct: 198 GPSLAEHGLKLMPMP-REDRDLLVERAMSTIRATVKGTFVIAIIQGVLTGIALALAGVPG 256

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    +T ++++IP  G P+ +    I+L+  G+      L  WGA+ + ++D  LRP 
Sbjct: 257 ALFWATVTTVLSVIPGIGPPLVWGPAGIWLIASGHYVAGGLLIAWGALVVGLIDNLLRPR 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           LVG   KLP L      +GG+   G +G+ +GP++ AL + IW    ++ 
Sbjct: 317 LVGQDAKLPDLMILISTLGGLTLFGAVGIIVGPMIAALFSSIWYLYALSY 366


>gi|259908241|ref|YP_002648597.1| hypothetical protein EpC_15860 [Erwinia pyrifoliae Ep1/96]
 gi|224963863|emb|CAX55365.1| Putative membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283478172|emb|CAY74088.1| putative AI-2E family transporter [Erwinia pyrifoliae DSM 12163]
          Length = 372

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 139/354 (39%), Gaps = 4/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++    L  L+ L  +F+ +L A I+     P+ S       + +   +++  +
Sbjct: 8   KGFFIFILAITTLGFLHILGPYFSAILWAAILAIIFHPLKSKIGKHCGDRNGLASMLTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  +PL  +     +E   L +++         V   + +     W      ++  
Sbjct: 68  IICLIVFIPLAVVASSLAVEFNALYNRIQANQTELTTVASSVVNHLP-EWLRHFLAENNL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  F        G     + +    M+  LFF  +DG  +    
Sbjct: 127 TDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFFLLKDGAYLVGMA 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G  ++A+ +G + G A+W AG+   +  G + 
Sbjct: 187 LDAIP-LSRFVKHHLFVKFAAVSRATVKGTVVVAVVQGTLGGIAFWCAGIQGSILWGSLM 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +  V I+LL  G +     L  +  + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVVIGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           P        +GG+   G+ G  IGP++ AL    W        + N ++I S+F
Sbjct: 306 PDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRDHRGNTDEIDSDF 359


>gi|254428305|ref|ZP_05042012.1| conserved domain protein, putative [Alcanivorax sp. DG881]
 gi|196194474|gb|EDX89433.1| conserved domain protein, putative [Alcanivorax sp. DG881]
          Length = 371

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 143/346 (41%), Gaps = 5/346 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q    + ++ +  V    ++ FFAP+  A  I    +P +   +++  +    +A+   
Sbjct: 11  EQRAFLFSLVAVSAVFALLIQPFFAPIFWACAISVIFYPFHKRLLARWPQRRNLVALFTL 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L ++P+L +    + E   L  KV             +     G    +   +  
Sbjct: 71  LLCVVLVVIPVLAVATSFVSEGVGLFQKVQSGEIDLASYVDKIKHAFPG---VQSLAERF 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                          T    F+ + A   G     + L++  M+   FF  RDG S+   
Sbjct: 128 DVDLEKIKEQAVKAFTGAGQFLAKRALAVGQNTFQFFLNLGLMLYLAFFLIRDGDSMVAM 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L     K +     +V R+T  G  ++AI +G + G  +W  G+P  +  GV+
Sbjct: 188 LIRALP-LGDEREKLLFAKFAEVTRATIKGNLLVAITQGALGGLIFWWLGIPGALLWGVV 246

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A++++IP     + +  V++YL   G++  AT L L+G   + +VD  LRP LVG   K
Sbjct: 247 MAVLSLIPAVGAGLIWFPVALYLYAVGDMKEATILILFGVFVIGLVDNLLRPILVGRDTK 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LP     F  +GG+   G+ G  +GP+L AL    W   I    E 
Sbjct: 307 LPDYVVLFSTLGGLAMFGITGFAVGPLLAALFVAFWGIFIREFNEE 352


>gi|13471741|ref|NP_103308.1| hypothetical protein mll1810 [Mesorhizobium loti MAFF303099]
 gi|14022485|dbj|BAB49094.1| mll1810 [Mesorhizobium loti MAFF303099]
          Length = 662

 Score =  145 bits (366), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 101/338 (29%), Gaps = 22/338 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LYF +  F P+  AL++ F   P+ S+   +         +++ +S      +    +  
Sbjct: 44  LYFGREVFLPIAIALLLTFALAPLVSAL-KRVGIPRIAAVIVSVLSAFAALALFSFVVA- 101

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               ++ EL   + +   + +   R L +   G       +  +          +  L  
Sbjct: 102 ---TQVSELAQNIPVYQTNILAKIRSLKETGVGGGIIAKLSNVVERVGQEIDRQDATLPA 158

Query: 144 NGIDF---------------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              D                            +    S   +I+ + F   +   +  + 
Sbjct: 159 ATPDKQPREPVPVEIVARERPLEVLQNIVGPLISPLGSAGLIIVVVIFMLLEREDLRDRF 218

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L  +       +  +   K +    L   ++ I   + +    W+ G+P+ +  G++ 
Sbjct: 219 IRLVGYGDLHRTTEALQDAAKRVGRYLLMQLVVNIVYAIPIAIGLWILGIPNALLWGLLA 278

Query: 249 AIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  +P   P       + + L +               +   +    + P+L G    
Sbjct: 279 LALRFVPYIGPAIGMLLPLFLALAVAPGWSLVLWTAALFVVMELVTGNVVEPWLYGSRTG 338

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  L      +      G LGL +   L   + V+ + 
Sbjct: 339 LSPLAIIVAAIFWTWLWGPLGLVLSTPLTVCLVVLGRH 376


>gi|227540838|ref|ZP_03970887.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183370|gb|EEI64342.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 460

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 96/326 (29%), Gaps = 18/326 (5%)

Query: 10  GIMRWMIMFIILVSL-YFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              R++ + I +  L   +        P+L A+++    WP         +   T   ++
Sbjct: 66  WAWRFIGLAIAMWILGKVIGSIWAGILPILIAVLLCTVLWPPTKWMKDH-KIPITLSVIL 124

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F   +  +      + K L               +            ++  +
Sbjct: 125 TLLGFVAIFSAVVAAIAPTFSTQGKRLFESGKEGVYQLGDWIQGPPLNAQAEQVDQVIDE 184

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q                 I               ++    +I  FFF +DG  + 
Sbjct: 185 VFGWLQDQ------------ASNIASGVFSGLSAASSALVTFGVAVILSFFFLKDGSKLL 232

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +       +  ++       +         ++  + +++G   W+  VP  +AL 
Sbjct: 233 PTIRGVVGQNVGWHLSEVLTRTWNTLGGYIRAQAAVSAIDAVIIGLGLWILKVPMALALA 292

Query: 246 VITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT     IP      +     +  L+ G +  A    +   +   +    L P L    
Sbjct: 293 VITFFAGFIPIVGAFSAGALAVLIALVDGGLKTAIFALILIVLVQQLEGNILSPMLQSKA 352

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G    G++G F+
Sbjct: 353 MDLHPVVVLLSVTVGGGLFGIIGAFL 378


>gi|116669725|ref|YP_830658.1| hypothetical protein Arth_1164 [Arthrobacter sp. FB24]
 gi|116609834|gb|ABK02558.1| protein of unknown function UPF0118 [Arthrobacter sp. FB24]
          Length = 457

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 111/343 (32%), Gaps = 14/343 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++  ++  L  +     PV+ A ++     P+     +++  +      I  +  +
Sbjct: 67  LILLVVAALIWMLSKISFLIIPVMVAALLAGLLSPVTRWLKARRVPN-GGAVAITVLGFL 125

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    L  +    +    EL S+ +   Q                W ++      +   
Sbjct: 126 GLIGGSLALVGRQLVAGFSELWSEALTGIQQIQ------------GWLADGPLHLTAAQM 173

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   T    N    I   A  FG     +   +I  +  L FF  +G  I   L  L
Sbjct: 174 DQYLQEATAALQNNSSSILSGALSFGSTAGHFAAGLILALFVLIFFLLEGDRIWAFLVRL 233

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A      R     + S       +A  + + +G    + GVP  + LGV+  I 
Sbjct: 234 LPRKARAATFGAGRKGWASMVSYARIQMFVAFVDAVGIGVGAAIIGVPLALPLGVLVFIG 293

Query: 252 AMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP    + +     +  L+     NA  +     +   +    L+P ++G  + L  +
Sbjct: 294 SFIPIVGALVTGAVAVLLALVANGWVNALVMLGIVLLVQQLESHILQPLVMGKAVALHPV 353

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                +  G    G+ G      ++A+     +       E++
Sbjct: 354 AVILSVAAGSYLAGIPGALFSVPILAVANSAIRYIAARTWEHE 396


>gi|229918356|ref|YP_002887002.1| hypothetical protein EAT1b_2641 [Exiguobacterium sp. AT1b]
 gi|229469785|gb|ACQ71557.1| protein of unknown function UPF0118 [Exiguobacterium sp. AT1b]
          Length = 389

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 113/358 (31%), Gaps = 11/358 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFF-----------APVLSALIIGFTSWPIYSSFISKKEE 57
           + +   + +F+++     +   F            P++ A +  +    I      + + 
Sbjct: 11  RALFWTLTIFLVIWVGTQISFVFEPIQVILALVTVPLIVAGLFFYFLVGIVDFLEKRLKG 70

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T    I  + ++ +F +    L      ++  LV+ +    +        + D     
Sbjct: 71  KRTLAVAITLIGLVLIFTLVFSILGPVLGEQITSLVNAMPSIAKELQKQAFAVRDTLLQN 130

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +             + T    +    I     +         ++I+ +   L + 
Sbjct: 131 EFFARFMAENDEMFRNLTTNITSYLGDLFGNIASSFGQVVGFVTSAVITIVVIPFMLLYM 190

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  +   +  L    +    + I   + + +RS      ++A   G+      W+ G
Sbjct: 191 LLDGKRLPDAIVKLLPSSYEKETRHILHDMHETVRSYVNAQLLVAFFVGITSLIGLWIVG 250

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           V   + L +   +  +IP   P    A ++ +    +      + +   +   I    + 
Sbjct: 251 VDYAILLALFMMVTNIIPYVGPFLGAAPAVVVAFIQDPIKVLWVIVVIIVVQQIESNVIS 310

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P + G  +K+  L     L+      G++G+ I     A+   + +  +   K  + +
Sbjct: 311 PLIQGKSLKVHPLTIIIVLLVAGNLAGIIGMLIAVPFYAVAKTVVQNIVRIYKLRERE 368


>gi|187734634|ref|YP_001876746.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187424686|gb|ACD03965.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 436

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 126/364 (34%), Gaps = 30/364 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   ++F ++  L FL+    P+L A ++ +   PI S  + + + S  +  V    + +
Sbjct: 41  IAAFVIFEVVELLGFLEPVLLPILIAAVVAYLLEPIVSWLV-RLKFSRPWAVVTVMFAAL 99

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +     +    + +  EL+   +        +     +IP      +          
Sbjct: 100 AVLVGFGATILPPLIRQTDELIDNRMELWDKTSELIDSTIEIPFISRTIDSVYSTSLREL 159

Query: 132 SLK-----------------------ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
           +                         +   +    + +        R     +   +SI+
Sbjct: 160 NASHYTEAEVHDLRNARTAREKLGAYMTINSSFYQDKLMSWLTSGGRALYSTIGIMVSIL 219

Query: 169 FMIIALFFFYRDGFSISQQLDSLGE---HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
              I  F+F  +   I ++  S+       F          +   + S F G  +++I E
Sbjct: 220 ITPIFAFYFLLEADKIKEKWPSILPLKVSKFRKDVVDTMEEINGYLISFFRGQMLVSIIE 279

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFL 283
           G+++     L G+P  + +G    ++ ++P    I+    ++ L     G+  +   +  
Sbjct: 280 GILIAICLKLIGLPYAITIGAAVCVLGIVPYLGIITAFIPAVLLAWFTWGDFQHVLIVSG 339

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG-VRTMGLLGLFIGPVLMALIAVIW 342
                       ++P +VG  ++L  L   F ++   +   GL+G  +   L A I V++
Sbjct: 340 IFLAVNQFDGWIIQPKIVGDSVELHPLTVMFSVLIWTLILGGLIGALLAVPLTAAIKVLY 399

Query: 343 KESI 346
           K  I
Sbjct: 400 KRYI 403


>gi|227489249|ref|ZP_03919565.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090780|gb|EEI26092.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 460

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 96/326 (29%), Gaps = 18/326 (5%)

Query: 10  GIMRWMIMFIILVSL-YFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              R++ + I +  L   +        P+L A+++    WP         +   T   ++
Sbjct: 66  WAWRFIGLAIAMWILGKVIGSIWAGILPILIAVLLCTVLWPPTKWMKDH-KIPITLSVIL 124

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F   +  +      + K L               +            ++  +
Sbjct: 125 TLLGFVAIFSAVVAAIAPTFSTQGKRLFESGKEGVYQLGDWIQGPPLNAQAEQVDQVIDE 184

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q                 I               ++    +I  FFF +DG  + 
Sbjct: 185 VFGWLQDQ------------ASNIASGVFSGLSAASSALVTFGVAVILSFFFLKDGSKLL 232

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +       +  ++       +         ++  + +++G   W+  VP  +AL 
Sbjct: 233 PTIRGVVGQNVGWHLSEVLTRTWNTLGGYIRAQAAVSAIDAVIIGLGLWILKVPMALALA 292

Query: 246 VITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT     IP      +     +  L+ G +  A    +   +   +    L P L    
Sbjct: 293 VITFFAGFIPIVGAFSAGALAVLIALVDGGLKTAIFALILIVLVQQLEGNILSPMLQSKA 352

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G    G++G F+
Sbjct: 353 MDLHPVVVLLSVTVGGGLFGIIGAFL 378


>gi|199598004|ref|ZP_03211428.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229552624|ref|ZP_04441349.1| possible permease [Lactobacillus rhamnosus LMS2-1]
 gi|258540000|ref|YP_003174499.1| membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|199591094|gb|EDY99176.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229314016|gb|EEN79989.1| possible permease [Lactobacillus rhamnosus LMS2-1]
 gi|257151676|emb|CAR90648.1| Conserved membrane protein [Lactobacillus rhamnosus Lc 705]
          Length = 392

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 112/339 (33%), Gaps = 7/339 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+      F      P++SA  + +   PI      +   S     ++  + V+   +
Sbjct: 30  VSFLFAPVATFFSTLLIPIISAGFLFYLFNPIVKLLQ-RLHISRNVSILLIFLVVIGAIV 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + ++ +    + ++ + V+ +    +         S        +      +    +   
Sbjct: 89  LIVMAVLPNLIYQITQFVTNIPDFLKGVRTFISKASHYTWYQRLN------IGKYVASLQ 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +S + L +  +                  +SII + + LF+F +DG +    +  L    
Sbjct: 143 ISPSKLLSQVLGGFSSGLPGVIGSLASTVISIITIPVMLFYFLKDGENFVPSIQRLLPRR 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A    +   +   +     G  I  +  G      Y + G+P    LG I  ++ +IP
Sbjct: 203 YHAEVATVFTRLNATLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGVVTIIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +           + L   I        + P ++G  + +  L     
Sbjct: 263 YLGPYIGIAPALIIAATEGWTKMLLVVLVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIIL 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      GLLG  +     A+I  +        + ++E
Sbjct: 323 LMVAGNLWGLLGTILAVPTYAVIKTVITYLYELYRFHQE 361


>gi|223043206|ref|ZP_03613253.1| membrane protein YubA [Staphylococcus capitis SK14]
 gi|222443417|gb|EEE49515.1| membrane protein YubA [Staphylococcus capitis SK14]
          Length = 404

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 125/354 (35%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
           G++  +++ I++       Y  + F         P++ +LI+ +   P+ +     +   
Sbjct: 34  GLVALVLLGIVIFIFDKVSYVFEPFIIIFNTIAAPIIVSLILFYLFNPLVNLMERYR-IP 92

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  V+V+ +  + +  L      +++ L+                ++       
Sbjct: 93  RLLGITIIYVAVVGIITLIVNLLIPIIGSQIEGLIKNSPHYLNKITQSIEKITT----NS 148

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++            + +   D      + F     +  + I+     LFF  
Sbjct: 149 FLSSYMSQVNDWLESAQKKIPSMLSEYFDGFGPKLASFAEAVSNVGVVIVTTPFILFFML 208

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    F   +  +   +   + S   G  I++   G++L   Y + G+
Sbjct: 209 KDGHRFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLLIGYSIIGL 268

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  + +    L +   +  F     + P
Sbjct: 269 KYPLVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPWMLLKLVIVWTLVQFFEGHFISP 328

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     M ++G+ IG  L A++ V+     +  K  
Sbjct: 329 NVMGKTLKIHPLTIIFILLCAGNLMNVVGVIIGIPLYAVLKVLVSHIFLLFKRR 382


>gi|269794149|ref|YP_003313604.1| putative permease [Sanguibacter keddieii DSM 10542]
 gi|269096334|gb|ACZ20770.1| predicted permease [Sanguibacter keddieii DSM 10542]
          Length = 455

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/323 (16%), Positives = 107/323 (33%), Gaps = 13/323 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              + +LK    PV  AL++     P+ +    +   S    A  + V ++    + ++ 
Sbjct: 77  FSLVAYLKVVIIPVAVALLLTVLLQPVAAFLRRRARFSPMLAAATSVVLLIAAITLLVVV 136

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                +  + +L  K V   Q  +             W +E      +   S  + S   
Sbjct: 137 AGRSIVSGISDLSDKAVEGFQQALT------------WLAEGPLHIDNESLSEYLDSGLD 184

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +   A              I  +    FF +DG SI   L  L         
Sbjct: 185 ALQENSSALLSGALSVTTTVGQVLAGSIIALFCTLFFLKDGRSIWGWLVGLLPRSTRERT 244

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +  R     + S      ++A  + + +G    + GVP  + LGV+  + + IP    I
Sbjct: 245 HQAGRRGFVTLASYARTQILVAFIDSIGIGLGAAIIGVPLALPLGVLVFVGSFIPFVGAI 304

Query: 261 -SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            +     +  L+      A  +     +   I    L+P+L+G  + L  +     +  G
Sbjct: 305 VTGAMAVLVALVALGPVQALIMLAVVLLVQQIEGNVLQPWLMGHAVSLHPVAVLLVVTTG 364

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
             T G++G      + A++  ++
Sbjct: 365 TLTAGIVGALFAVPIAAVLNTVF 387


>gi|224476488|ref|YP_002634094.1| putative permease [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421095|emb|CAL27909.1| putative permease [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 408

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 126/354 (35%), Gaps = 13/354 (3%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
           G++  +++ I +       Y  + F         PV+  LI+ +   PI +     +   
Sbjct: 29  GLVMLILIGIAIFIFDKVSYIFQPFVIIFNTIAAPVILGLILFYLFNPIINLMERYR-IP 87

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             +  +I     + +  + +  L      ++K     V         +   ++ +  G  
Sbjct: 88  RLWGIIILYCVAVAVIALIVNLLIPVIGGQIKTFSHHVPRYVNKFNDIVDRVTSMSRGTG 147

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S  +++               + ++  D        F    ++  + ++     LFFF 
Sbjct: 148 FSSFYSQIQDQLDKFAKKVPG-MVSDYFDGFGTKVMSFAEAVVNVGVVLVTTPFVLFFFL 206

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG    +    +    F   + ++   +   + S   G   +++  G++L   Y + G+
Sbjct: 207 KDGHHFKETAIKVVPPKFRQDFHEVIESMSLQVGSYIQGQMFVSLCIGVLLFIGYSIIGL 266

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + +  +      L +   +  F     + P
Sbjct: 267 DYSLVLACIAAVTSVVPYLGPTIAISPAIVMALITSPIMLLKLLIVWTLVQFFEGHFISP 326

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     +G++G+ +     A++ V+        K  
Sbjct: 327 NVMGKTLKVHPLTIIFVLLCAGNLLGIVGVILAIPGYAVLKVLVMHLFDIFKRR 380


>gi|310644432|ref|YP_003949191.1| hypothetical membrane protein [Paenibacillus polymyxa SC2]
 gi|309249383|gb|ADO58950.1| Hypothetical membrane protein [Paenibacillus polymyxa SC2]
          Length = 381

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 125/337 (37%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I +I    +  LK    PV+ + ++ +   P+      + +    +  V+  + ++ +  
Sbjct: 40  ISYIFTPVIVLLKTIILPVILSGVLYYLLNPLVDVLE-RNKVKRVYSIVVLFLLIIGIIA 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      +++ L+  V    +        L     G      +   +    S   
Sbjct: 99  IVITSVVPVIRDQIQGLIQNVPAYTEQVKQQFERL----IGSNFVNQFQNTIQIDPSELA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  I+        F  +  +  L+I  +   LF+  +DG  + Q +  +   +
Sbjct: 155 SKASEKLSGFINNAWTGVGSFLGVITETVLAIATVPFILFYLLKDGHKLPQWILKMLPPM 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     +I   +   + S   G  I++   G++L   Y + G+   + L VI +  +++P
Sbjct: 215 FRKETDRIMTEMNHQVSSYIRGQIIVSFCIGVLLYIGYLIIGLDYSLTLAVIASFTSVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ + I  +      + +   +   I  K + P ++G  +++  +   F 
Sbjct: 275 YLGPVIAITPALIVAIVTSPIMLLKMVIVWTVVQLIEGKFISPQIMGKSLRVHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++      G++G+ +     A++ VI        ++ 
Sbjct: 335 ILTAGNLFGVVGIVLAVPGYAVLKVIVTHLFSFFQKR 371


>gi|294676369|ref|YP_003576984.1| hypothetical protein RCAP_rcc00812 [Rhodobacter capsulatus SB 1003]
 gi|294475189|gb|ADE84577.1| protein of unknown function UPF0118, transmembrane [Rhodobacter
           capsulatus SB 1003]
          Length = 367

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 114/348 (32%), Gaps = 14/348 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q  +  +   ++ + L+ L     P L    I +   P+      +   S         +
Sbjct: 8   QITIWGLSAAVLALVLWKLGDVLLPFLVGGAIAYFLDPLADRLE-RLGLSRALATTSIAL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                 +V  L +    + ++  LV                         ++        
Sbjct: 67  IATLGIVVLALAVAPLLVRQLIGLVETAPAIATRLQGFL----------TSTFPSMMEHG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  + S           + +      M  ++  + I+ + +  F+   D   +  Q+
Sbjct: 117 SIINESLTSLGNAVKARGGELAQGLLSSAMTLVNAVVFIVVVPVVTFYMLLDWDRMVAQI 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D+L         +++ R + +V+     G   + +  G    +    AG+   +  G I 
Sbjct: 177 DTLLPLDHAPTIRQLGRDIDRVLSGFVRGQVSVCLILGAFYAAGLMAAGLSFGLLAGAIA 236

Query: 249 AIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             +  IP    +   A++I L      G+  +   +    AI  F+    + P LVG  +
Sbjct: 237 GALTFIPYVGALVGGALAIGLALFQFWGDWMSIGLVAGIFAIGQFLEGNVITPRLVGNSV 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F L       G +G+ +   + A+I V+ + +I   ++ +
Sbjct: 297 GLHPLWLIFALSAFGTLFGFVGMLVAVPVSAVIGVLIRFAIEHYRQGR 344


>gi|116629975|ref|YP_815147.1| permease [Lactobacillus gasseri ATCC 33323]
 gi|238853587|ref|ZP_04643957.1| transport protein [Lactobacillus gasseri 202-4]
 gi|282851417|ref|ZP_06260782.1| membrane family protein [Lactobacillus gasseri 224-1]
 gi|311110392|ref|ZP_07711789.1| membrane protein [Lactobacillus gasseri MV-22]
 gi|116095557|gb|ABJ60709.1| Predicted permease [Lactobacillus gasseri ATCC 33323]
 gi|238833805|gb|EEQ26072.1| transport protein [Lactobacillus gasseri 202-4]
 gi|282557385|gb|EFB62982.1| membrane family protein [Lactobacillus gasseri 224-1]
 gi|311065546|gb|EFQ45886.1| membrane protein [Lactobacillus gasseri MV-22]
          Length = 393

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 111/336 (33%), Gaps = 4/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++     F      P+L A I  +   P+      K +       ++  V V+   I
Sbjct: 42  ISFVLNPFWTFFNAILPPILVASIQYYLMDPVVDWMEKKLKVPRIITIILLFVIVLGGLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      +   L+       Q        +   P          + +S  Q+   
Sbjct: 102 WIINTLIPIIQHQTDSLIKNWPAYWQDAQKGFEKMIRDPRLNGVRGGINQAVSDAQTKMF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        +  +    +   MIF+            LFF  +DG  ++  +       
Sbjct: 162 KTGQDSFNLALSNLSSAVNVITMIFMTLLT----APFVLFFMLKDGHRLNPYVTKFAPQR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +  +   +   + S   G   +A   G++    Y + G+   + L V+  ++ MIP
Sbjct: 218 LQPSFSSLLSDINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGVLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I L +  +      + +  AIE  +  + + P ++G  + +  + T   
Sbjct: 278 YFGTFIAFIPAIILGLISSPMMLVKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G     GL G+     + A+I +I        ++
Sbjct: 338 LIGASAVAGLWGVIFAIPVYAVIKIIVTRLFNYYRK 373


>gi|37680914|ref|NP_935523.1| permease [Vibrio vulnificus YJ016]
 gi|37199664|dbj|BAC95494.1| predicted permease [Vibrio vulnificus YJ016]
          Length = 361

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 146/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+  F SK  +     +
Sbjct: 6   KISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++ V +  + +VPLLF+F   + +             HG I        I  G+     
Sbjct: 66  LLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGLKLVNE 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +            L T+    +   +++      ++ +    M+  LFF  RD  
Sbjct: 126 YLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   K+   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYLL+ G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATIYLLLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K   ++  ++
Sbjct: 305 GSAGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDNS 361


>gi|323137707|ref|ZP_08072783.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322397004|gb|EFX99529.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 415

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 115/356 (32%), Gaps = 10/356 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q ++  +    +   LYFL    AP ++   +G+   P+          S    A+I
Sbjct: 48  LERQLMLWGLSFVGLAAILYFLSPVLAPFVAGTALGYLLDPVADRMQRW-GVSRLGAALI 106

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   +  L+ L      ++   ++ +    Q    +    S      + +E   K
Sbjct: 107 LLAGFIAFVVTALIILLPILSHQLAGFITALPGYLQTLHGLVTEWSSSFTSEYINEWLQK 166

Query: 126 HLSHPQSLKILSETFL------KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +          ++ +           I    +     G   ++    I+   +  F+   
Sbjct: 167 YGLGAAGASFDAQKYFNDLASQGAALIGDFLKSLVWRGYALINVVSLIVITPVVAFYMLL 226

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   + + +D L         + ++R + + +     G +++ +  G+         G+ 
Sbjct: 227 DWDHMVEIIDDLIPPRHRDDVRMLARDIDRALAGFVRGQSLVCLFLGVWYAVGLSAIGLN 286

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA---TCLFLWGAIELFIVDKTL 296
               +GVI  I++ IP    I+    SI + I     +              L +    L
Sbjct: 287 FGFLIGVIAGILSFIPYVGSITAFVFSIIISIVQAWPHINLPIEAVAIVTTGLIMDGYVL 346

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            P LVG  + L  +   F L+      G  GL I     A +  I +      + +
Sbjct: 347 SPRLVGASVGLHPVWIMFALLAFGALFGFTGLIIAVPTAAALGAIMRFLARRYRAS 402


>gi|50086276|ref|YP_047786.1| hypothetical protein ACIAD3289 [Acinetobacter sp. ADP1]
 gi|49532252|emb|CAG69964.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter sp. ADP1]
          Length = 370

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 162/333 (48%), Gaps = 6/333 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           K F  PV+ A II + +WPIY               A +    ++ +  +PL F  +   
Sbjct: 29  KYFIVPVVWAAIIAYMTWPIYIGIQRFCGENRPNLSATLMISLIILVIGIPLTFAVFMLQ 88

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            E + L  ++      G +  P ++ ++P            ++   S    + +    + 
Sbjct: 89  HEGRNLFIELQQQIFSGHLSAPDFIRELPLVGNEITRILNEINTNPSNLTQNLSLWIQSH 148

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +     +            + + F +++LFFFYRDG +I  Q+    E +          
Sbjct: 149 MG----YGRFVLSEISKNLVKLCFALLSLFFFYRDGHTILNQVSKALEMVIGPRIHHYMD 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +  R+   G+ + A+ + ++ G +Y++AGVP+ + L ++T ++A+IP G P+++T+V
Sbjct: 205 TISETTRAVVYGVGLTAVAQAILAGLSYFVAGVPNPMVLTIVTFLLALIPFGTPLAYTSV 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +++L  +G +  A  + LWG   +   D  +RP ++ G  ++PFL   FG++GG+ + GL
Sbjct: 265 ALWLFSQGQMMGAIGVMLWGVCIVSTSDNVIRPLVISGATQIPFLLIMFGVLGGLASFGL 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +GLFIGPV++A++  IW+E +    E +    +
Sbjct: 325 VGLFIGPVILAILLAIWREWLHENIEPEPVPKA 357


>gi|227487862|ref|ZP_03918178.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227092189|gb|EEI27501.1| membrane protein [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 469

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 107/337 (31%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +++ + + + + + G       P   AL+I    WP  +    +    +   A++  
Sbjct: 68  LRLLVIGVTVYAGWRILGALWQGVLPAALALLISSVLWPPAAWL-KRHRLPAWLAALVTM 126

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V+  F   +  +      + + L  + V A Q               +WA E      
Sbjct: 127 ITVLGAFSAIIALIAPGVARQSQTLYFQSVDAIQRLQ------------LWAQEPPLSLK 174

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +                I               +     +I  FF  +DG      
Sbjct: 175 GEDFNRIFGEAVAWIQQQAGNIAGGVFAGLGAASSLLVLATITLIITFFVLKDGERFMPW 234

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +        +  ++       + +      ++A+ + +++G    +  +P  +AL  +
Sbjct: 235 ARAFTGRQVGWHLTELLTRCWNTLSNYIRVQALVALIDAVLIGLGLVVMKIPMALALATL 294

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   +P     ++ T      L+   +  A  + +   I   +    L P L    + 
Sbjct: 295 TFVAGFVPIVGAFVAGTVAVAIALVTMGLTKALMVLILILIVQQLEGNVLSPMLQSKAMN 354

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L        +  G    G+ G  +   + A +AV+ +
Sbjct: 355 LHPAVVILVVTVGGGLFGIAGALLAVPITATVAVLLR 391


>gi|312864862|ref|ZP_07725093.1| putative membrane protein [Streptococcus downei F0415]
 gi|311099989|gb|EFQ58202.1| putative membrane protein [Streptococcus downei F0415]
          Length = 388

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 117/336 (34%), Gaps = 4/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI      FL     P++ ++++ +   PI +        +      +  + ++ L I
Sbjct: 42  ISFIFTALAGFLTVIMLPIVISVLLYYLLKPIVNFVEKHLPINRVMAISLVYLVIVGLLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                 F     ++   ++ +    +        +                +++  S  I
Sbjct: 102 WGGASFFPMLQEQIMSFINNLPHYIKSVERQVNQVIADNRFEAIRPQLEDWVNNYSSKAI 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N + +   FAS    + +   +    M   +F+  RD   +   +       
Sbjct: 162 GYAENFSKNIVSWAGDFASAVTRVAIAIIM----MPFIVFYLLRDSDKLKGSILKTFPVK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I   V    +    G   +AI  G++    + L  +   VALG++  ++ +IP
Sbjct: 218 WRKPLSRILSDVNTQWQGYVQGQVTVAIVVGIMFSILFSLIDLRYAVALGILAGVLNLIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I L +    +    + +  A+E  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMLPAIILGLVAGPWMLIKVLIVFAVEQTIEGRFVSPLVLGTKLSIHPIMILFI 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + + + V+ KE     ++
Sbjct: 338 LLASGSVFGVWGVLLGIPVYSALKVVVKEIFDWYRD 373


>gi|7362948|emb|CAB83202.1| putative membrane protein [Gluconobacter oxydans]
          Length = 460

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 111/344 (32%), Gaps = 5/344 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +RE +      +  + +  +  SLYF      P + AL++             +      
Sbjct: 44  LREHLNIRDMCVLILTILAVFYSLYFTAPILLPFVFALVLNLLMIAPMRFLTQRLHLPRH 103

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  V +  +       +       +      +         +   +          
Sbjct: 104 LAGLMLIVMMFGIVGGIATTISVPAAGWITRAPQTLPPLQSKLALLSGPID--VVQRDYM 161

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L      H  S            G + + R  S       +       M++ LFF   +
Sbjct: 162 RLSAMFSGHSGSTHTTHGVSGTMRGRNALSRLGSSVLAGTRELAGGFFSMLLMLFFLMTE 221

Query: 181 GFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G ++ ++   +           +++  + + +    + +T++ +G GLV     W  G+P
Sbjct: 222 GDTLLRRCVEIMPTYAKKRRLVEMATQIEQNVSLYLVTITMMNLGVGLVNMIQCWATGMP 281

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           + +  GV+  ++  IP   P++   V     L    ++  A        +   +  +T+ 
Sbjct: 282 NPLLWGVLAFLLNYIPIIGPLTGVVVYFVVGLFSFPSLLYALLPPSIYLLIHVLEGETIT 341

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P L+     L  +     L+      G+ G F+   ++A+  ++
Sbjct: 342 PMLLARRFTLNPVFVMGSLLFWDWMWGISGAFLSVPMLAVFKIV 385


>gi|27365038|ref|NP_760566.1| putative permease [Vibrio vulnificus CMCP6]
 gi|27361184|gb|AAO10093.1| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 361

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/357 (20%), Positives = 145/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+  F SK  +     +
Sbjct: 6   KISSSHWVLIVALLAAGTACYLLVEPYINSIIMAFIISLLMFPIHDWFESKMPKHRNMAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++ V +  + +VPLLF+F   + +             HG I        I  G+     
Sbjct: 66  LLSCVVLTFIIVVPLLFVFAAIVQQGSVFSQNTYQWVTHGGIQQVLGHPWIVKGLKLVNE 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +            L T+    +   +++      ++ +    M+  LFF  RD  
Sbjct: 126 YLPFDNIDAKSIAEKIGQLATSFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   K+   +  V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDKLLSEIENVSKSAVMGSFLTAIAQGIAGGLGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATIYLFLTGDTGWAIFLAIWSIAIVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       K   ++  ++
Sbjct: 305 GSGGMNTLLIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFKGFLDQQDNS 361


>gi|327192209|gb|EGE59178.1| putative permease protein [Rhizobium etli CNPAF512]
          Length = 424

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 102/325 (31%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     V 
Sbjct: 60  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATVG 118

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + +F + L+ L    + +  +   ++               +     W       
Sbjct: 119 ILIAFVIVFALALMILIPVLISQFNDFAERLPGYISQLQQFITQTQNSLLPDWVKSQAGT 178

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 179 IKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 233

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      +    ++I++ + + I     G   + +  G+   +   L G+   + +G
Sbjct: 234 SKVDQWIPRDYVGDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 293

Query: 246 VITAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++    +    +      +        F+    L+P LVG
Sbjct: 294 LFAGMISFIPYVGSLVGLILAVGVAIVQFWPDYPWIGLVLAVFFSGQFLEGNILQPKLVG 353

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L       G +G
Sbjct: 354 SSVGLHPVWLMFALFAFGALFGFVG 378


>gi|319427812|gb|ADV55886.1| protein of unknown function UPF0118 [Shewanella putrefaciens 200]
          Length = 360

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 159/348 (45%), Positives = 222/348 (63%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRTLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCRGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA V ++   ++PL F+F Y + E++  V  +V  NQHG  VP W+ ++P       L 
Sbjct: 63  TIALVLIVLGLVIPLAFVFSYALHEIRGWVEWLVHTNQHGAAVPVWIKELPLIGEWLTLQ 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                          + +    +  I R+  + G   L   L+++FM+I LFF Y+DG  
Sbjct: 123 WHEFIGEPHELGKIISAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGEH 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA+IPGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALIPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|114327071|ref|YP_744228.1| hypothetical protein GbCGDNIH1_0407 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315245|gb|ABI61305.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 391

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 100/350 (28%), Positives = 170/350 (48%), Gaps = 5/350 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-KKEESSTFLAVIA 66
            +     + + I   +L+ L  F   +  A +    +WP+Y    +         L ++ 
Sbjct: 39  QKIAFCVLALIITAGALWTLGSFMPALAWAAVFAIATWPLYRRARNAWPGGGRVLLPLLF 98

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV+V  LF+ PL         + + ++  V     +G+PVP  LS +P G    E W  +
Sbjct: 99  TVAVTLLFLGPLTLAGIEVANDARGVIDGVEHVLHNGLPVPSALSSLPFGSPVVEWWQDN 158

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L   +    L+    ++     +   +     +     +   FM++ LFF YRDG +++ 
Sbjct: 159 LGSGEGAARLARHIDRSQ----LVAISRHLSAVLAHRVVLFSFMLVTLFFLYRDGDTLTA 214

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           QL       F  +  ++ R V   I  T  G+ ++ + EG+++G  Y +AGVP     G 
Sbjct: 215 QLSRASARAFGPHGARVGRQVIASIHGTVDGLVLVGLAEGILIGIGYAIAGVPHPTLFGA 274

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +TAI AMIP GAP +F   ++ L   G + +A  +  +G + +FI D  +RPFL+GG  +
Sbjct: 275 VTAIAAMIPFGAPAAFLLAALLLAANGALLSAAIIAGYGCLIVFIADHFVRPFLIGGATR 334

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           LPF+    G++GGV   GL GLF+GP LMA +  +W+E   A  +N+++ 
Sbjct: 335 LPFILVLLGILGGVECWGLFGLFLGPALMAAVTHLWREFSAAGPDNRDRQ 384


>gi|268319844|ref|YP_003293500.1| hypothetical protein FI9785_1373 [Lactobacillus johnsonii FI9785]
 gi|262398219|emb|CAX67233.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
          Length = 388

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 4/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++     F    F P+L A I  +   P+      K +       ++  V V+   I
Sbjct: 42  ISFVLNPFWTFFNAIFPPILVASIQYYLMDPVVDWMEKKLKVPRIITIILLFVIVVGGLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      +   LV                +   P          + +S  Q+   
Sbjct: 102 WIINTLIPIIQHQTDSLVKNWPTYWNDAQKGFEKMIRDPRLNGVRGGINQAISDAQTKMF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        +  +    +   MIF+            LFF  +DG  ++  +  +    
Sbjct: 162 KTGQDSFNLALSNLSSAVNVITMIFMTLLT----APFVLFFMLKDGHRLNPYVTKIAPKK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +  +   +   + S   G   +A   G++    Y + G+   + L V+  I+ MIP
Sbjct: 218 LQPSFSSLLSDINGAVASYIRGQITVAFWVGVIFAIGYSVIGLNYGITLAVLAGILNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I L +  +      + +  AIE  +  + + P ++G  + +  + T   
Sbjct: 278 YFGTFIAFIPAIILGLISSPMMLIKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G     GL G+     + A+I +I        ++
Sbjct: 338 LIGASAVAGLWGVIFAIPVYAVIKIIVTRLFNYYRK 373


>gi|241666775|ref|YP_002984859.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240862232|gb|ACS59897.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 662

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 106/351 (30%), Gaps = 14/351 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             P  +  +  +  ++  LYF K    P+  A+++ F   PI S    K         ++
Sbjct: 28  SAPSRMPAFASVLAVIAILYFGKEVLLPLAIAVLLTFALAPISSRL-RKLGMPRIPAVIV 86

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V    + ++  L +  +     + L +           +    +D       + +   
Sbjct: 87  TVVIAFLVLVLFGLVVAGHVAEVAQNLPAYQGNIIAKIRSLQESGTDSGIVRRLTSVVES 146

Query: 126 HLSHPQSLKILSETFLKTN-----------GIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 + +         +                    +      L    S+  +I+ +
Sbjct: 147 VGRELSNAEQRPGAPGTGSRPREPVLVEIFAPSRPIETLTSLIGPLLGPIASLGLIIVVV 206

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F   +   +  +   L  +       +  +     +    L   ++    G+ L    W
Sbjct: 207 IFMLLEREELRDRFIRLVGYGDLHRTTEAIQEAGSRVAQYLLMQLVVNCAYGVPLALGLW 266

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIV 292
             G+P+    G++  ++  +P   P+  T + ++L    +        +     +     
Sbjct: 267 AVGIPNPALWGMLAIVLRFVPYIGPVIATVLPLFLAFAVDPGWSLVLWVGAIFLVLELTS 326

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  + P+L G    L  L      +      G +GL +   L   +AV+ +
Sbjct: 327 NNVIEPWLYGSRTGLSPLAIIVAAIFWAWLWGPVGLVLSTPLTVCLAVLGR 377


>gi|314933536|ref|ZP_07840901.1| putative membrane protein [Staphylococcus caprae C87]
 gi|313653686|gb|EFS17443.1| putative membrane protein [Staphylococcus caprae C87]
          Length = 404

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 124/354 (35%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
           G++  +++ I++       Y  + F         P++ +LI+ +   P+ +     +   
Sbjct: 34  GLVALVLLGIVIFIFDKVSYVFEPFIIVFNTIAAPIIVSLILFYLFNPLVNLMERYR-IP 92

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  V+++ +  + +  L      +++  +                ++       
Sbjct: 93  RLLGITIIYVAIVGIITLIVNLLIPIIGSQIEGFIKNSPHYLNKITQSVEKITT----NS 148

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++            + +   D      + F     +  + I+     LFF  
Sbjct: 149 FLSSYMSQVNDWLESAQKKIPSMLSEYFDGFGPKLASFAEAVSNVGVVIVTTPFILFFML 208

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    F   +  +   +   + S   G  I++   G++L   Y + G+
Sbjct: 209 KDGHRFKDYSTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLLIGYSIIGL 268

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  + +    L +   +  F     + P
Sbjct: 269 KYPLVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPWMLLKLVIVWTLVQFFEGHFISP 328

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     M ++G+ IG  L A++ V+     +  K  
Sbjct: 329 NVMGKTLKIHPLTIIFILLCAGNLMNVVGVIIGIPLYAVLKVLVSHLFLLFKRR 382


>gi|114704853|ref|ZP_01437761.1| permease [Fulvimarina pelagi HTCC2506]
 gi|114539638|gb|EAU42758.1| permease [Fulvimarina pelagi HTCC2506]
          Length = 393

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 106/329 (32%), Gaps = 9/329 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++T+   Q        F+ ++ ++       P +  ++I +   P+   F  +   S   
Sbjct: 4   QKTVFWRQVYFWCAAAFLFVLVIWLFADILLPFVLGMVIAYLLDPVADWFERR-GLSRLM 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + LFI  +L +      ++  L  ++                 P     + 
Sbjct: 63  ATTVILILFVFLFISAILIVVPVISSQVINLAERMPEYLDRLQGFAVAARSGPLAFLFTS 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             +        L   S     T+ +           + F+++    +   +  F+   D 
Sbjct: 123 EESTLEQDFAQLLSDS-----TSFVTSFLSSLWSSSLAFVNFVSLFVVTPVVAFYLLLDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +++D+          ++I+R +   +     G   + +  G        L G+   
Sbjct: 178 DRMVKKVDTWLPREHQTTIRRIARDIDLSVAGFVRGQGSVCLILGSFYAVGLTLVGLNFG 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRP 298
           + +G+   +++ +P    +    +SI +       +      +     +  F     L+P
Sbjct: 238 LLIGLFAGLISFVPYIGSLLGLVLSIGVALVQFWPDWPWIVAVAAVFFVGQFFEGNILQP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LVG  + L  +   F L       G +G
Sbjct: 298 KLVGASVGLHPVWLMFALFAFGALFGFVG 326


>gi|258508822|ref|YP_003171573.1| membrane protein [Lactobacillus rhamnosus GG]
 gi|257148749|emb|CAR87722.1| Conserved membrane protein [Lactobacillus rhamnosus GG]
 gi|259650126|dbj|BAI42288.1| putative transporter protein [Lactobacillus rhamnosus GG]
          Length = 392

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 112/339 (33%), Gaps = 7/339 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+      F      P++SA  + +   PI      +   S     ++  + V+   +
Sbjct: 30  VSFLFAPVATFFSTLLIPIISAGFLFYLFNPIVKLLQ-RLHISRNVSILLIFLVVIGAIV 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + ++ +    + ++ + V+ +    +         S        +      +    +   
Sbjct: 89  LIVMAVLPNLIYQITQFVTNIPDFLKGVRTFISKASHYTWYQRLN------IGKYVASLQ 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +S + L +  +                  +SII + + LF+F +DG +    +  L    
Sbjct: 143 ISPSKLLSQVLGGFSSGLPGVIGSLASTVISIITIPVMLFYFLKDGENFVPSIQRLLPRR 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A    +   +   +     G  I  +  G      Y + G+P    LG I  ++ +IP
Sbjct: 203 YHAEVATVFTRLNATLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGVVTIIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +           + L   I        + P ++G  + +  L     
Sbjct: 263 YLGPYIGIAPALIIAATEGWTKMLLVVLVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIIL 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      GLLG  +     A+I  +        + ++E
Sbjct: 323 LMVAGNLWGLLGTILAVPTYAVIKTVITYLYELYRFHQE 361


>gi|222148178|ref|YP_002549135.1| permease [Agrobacterium vitis S4]
 gi|221735166|gb|ACM36129.1| permease [Agrobacterium vitis S4]
          Length = 379

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 122/353 (34%), Gaps = 5/353 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +   Q +     + +++  L        P ++ + + +   P+      +   S     
Sbjct: 8   PVFWRQVLFGIGTLAVVIAFLLTFSSILLPFVAGMALAYFLDPVADRLE-RLGLSRMMAT 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  VS + +F++ L+ +    + ++ + ++ +         +    +      W +   
Sbjct: 67  VLILVSFVVIFVLSLVIIIPVLVTQLNDFITNIPDYVSQLQALIAKSNASWVPKWLNGQV 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +  ++  +              I  +       G   LD    ++   +  F+   D   
Sbjct: 127 STQMAAIKGNFSRYLAE-GAGFIGTLLSQLWNSGKALLDIISLLVVTPVVAFYLLLDWDR 185

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +LDSL         ++I+R + + I     G   + +  G+       L G+   + 
Sbjct: 186 MMAKLDSLIPRNQVGAVREIAREMNRTIAGFVRGQGSLCLILGIYYAVGLSLIGLNFGLL 245

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL---WGAIELFIVDKTLRPFL 300
           +G  T +++ IP         +++ +       +   + +   +     F+    L+P L
Sbjct: 246 IGFFTGMISFIPYVGSSVGLVLALGMAAVQFWPDYLWVVITGVFFFTGQFLEGNVLQPKL 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG  + L  +   F +       G LG+ +     A + V+ + ++    ++ 
Sbjct: 306 VGSSVGLHPVWLMFAMFAFGSLFGFLGVLVAVPCAAAVGVLVRFAVRRYLDSD 358


>gi|260549903|ref|ZP_05824119.1| permease [Acinetobacter sp. RUH2624]
 gi|260407153|gb|EEX00630.1| permease [Acinetobacter sp. RUH2624]
          Length = 372

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 160/335 (47%), Gaps = 6/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST-FLAVIATVSVMCLFIVPLLFLFYY 84
            LK F  PV+ A II + +WPIY        E+     A +    V+ +  VPL+   + 
Sbjct: 27  ILKYFIVPVVWAAIIAYMTWPIYLRIQRFFGENRNNLNATVMISFVILVVGVPLICAIFI 86

Query: 85  GMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
              E + L   +      G + VP ++ ++P            ++   +  I S      
Sbjct: 87  LQHEGRNLYLDLQRQVFSGHLSVPDFIKNLPFIGKEITRTLNDINTDPNSTIQSIAAWIQ 146

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +       +            + + F I++LFFFYRDG +I  Q+    E +        
Sbjct: 147 SH----LSYGRVLINEISKNLVKLGFAILSLFFFYRDGHTILTQVSKALEMVIGLRIHHY 202

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              + +  R+   G+ + AI + ++ G +Y++AGVP+ + L + T ++A+IP G P+S+ 
Sbjct: 203 LDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLTIATFLLALIPFGTPVSYL 262

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V ++L  +G    A  + LWG + +   D  +RP ++ G  ++PFL   FG++GG+ + 
Sbjct: 263 GVGLWLFSQGQTMEAIGVVLWGVLIVSSSDNVIRPLVISGATQIPFLLIMFGVLGGIASF 322

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GL+GLFIGPV++A++  IW+E +    + +    +
Sbjct: 323 GLVGLFIGPVILAVLLAIWREWLHETIDPEPMPKT 357


>gi|188584262|ref|YP_001927707.1| hypothetical protein Mpop_5076 [Methylobacterium populi BJ001]
 gi|179347760|gb|ACB83172.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 675

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 33/358 (9%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  II+  L+  +    P+  A+++ F   P+ +    +         +++ +    + 
Sbjct: 31  IVFAIIVAGLFLGREVLIPIAIAVLLSFVLGPLVNFL-RRLRLGRAVAVLVSVLLAAGII 89

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 +      ++ EL   V    +        L +   G     +   + +  Q  +
Sbjct: 90  AALATVIGV----QVAELAQDVPRYQRTIERKVEGLREGTLGRTMDYIANINRAIHQGGE 145

Query: 135 ILSETFLKTNGIDFI--------------------------PRFASRFGMIFLDYCLSII 168
              E   K                                    A+           +  
Sbjct: 146 ENKEAAEKARREQAARDSTRKTEPEPPKPMLVQVEERRPSPLELATTVLSPVAQPLATAG 205

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            +I+ L F       +  +L  L                 + +   FLG   +    G+V
Sbjct: 206 IVIVVLLFILMQREDLRDRLIRLAGSSDLHRTTVAMDDAARRLSRYFLGQLALNSAFGVV 265

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGA 286
           +G   W+ GVPS V  G+   +M  +P         + I L    +   +  +  FL  A
Sbjct: 266 IGVGLWIIGVPSPVLWGIFALVMRFVPYIGAFLSAVLPIALAAAVDPGWSMVVATFLLFA 325

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I   IV + + P + G    L         +      G +GL +   L   + V+ + 
Sbjct: 326 IVEPIVGQIIEPLVYGHSTGLSPFSVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 383


>gi|296118156|ref|ZP_06836737.1| putative permease [Corynebacterium ammoniagenes DSM 20306]
 gi|295968714|gb|EFG81958.1| putative permease [Corynebacterium ammoniagenes DSM 20306]
          Length = 510

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 114/340 (33%), Gaps = 21/340 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +  + + +I   LY L            PV+ +LI+     PI S    + +  S   ++
Sbjct: 75  LWAIRLVVIGFFLYLLGEIIGSFWQGILPVVLSLIVCTVLSPIASKL-RQFKFPSALASI 133

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ +  + +      F+      + + L  + V   Q               +WA     
Sbjct: 134 ISILLFVIIVGGIFSFVAPDFARQSQSLYLQAVEGIQRLQ------------LWAQGPPL 181

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      +             I            +  ++++ M +  FFF +DG   
Sbjct: 182 NLNAADIGSYVDEVANWIQQQAGSIAGSFISGVGTATNVVITLVVMTVMTFFFLKDGHKF 241

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +          +  +        +        ++++ + +V+G+  +  GVP  +AL
Sbjct: 242 LPWIRQATSRRAGWHLTEALTRGWNTLGGYIRAQALVSLIDAVVIGAGLYAVGVPLAMAL 301

Query: 245 GVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +IT +   IP    I   A+S+   L+      A  +     +   +    L P+L   
Sbjct: 302 AIITFMAGFIPLIGAIVAGALSVLIALVSLGFTEALIVLGLVLLVQQLEGNVLSPWLQSK 361

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L  +     +  G     L+G F+     A+IAV ++
Sbjct: 362 AMNLHPVIVLVSVTVGGALFNLIGAFLAVPAAAMIAVFYR 401


>gi|262368618|ref|ZP_06061947.1| PerM family permease [Acinetobacter johnsonii SH046]
 gi|262316296|gb|EEY97334.1| PerM family permease [Acinetobacter johnsonii SH046]
          Length = 406

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 123/348 (35%), Gaps = 6/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + +IL  LY LK    P + A ++ +   P+      K             +
Sbjct: 7   KRIFILAGIALILWVLYLLKPVVLPFIGAFLVAYLFSPLVDKLH-KIGLPRWLSISAVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  +   +L      ++    + +           ++L  +        +      
Sbjct: 66  GIGVVITLAFWYLVPLVWEQLMYAKNSIPSGIHWANY--KFLPWLSDSFNLVPMELDVDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D   +    
Sbjct: 124 ISAAIMEYVQTNYSADSIQAMIAKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLDSF 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +      I +    V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRRYEEQTLVIVKECHSVLGAFVKGQFLVMVLLGVVYAMGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +      + +   I   +    L+PFL+G  I
Sbjct: 244 GLCSIIPYLGFAVGIIAAVIASLFQFGIDWMQLLLVGVVFMIGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G+LG+ I   + A+I V+ + +    + + 
Sbjct: 304 GLSPVAVVFAVLAGAQLGGILGMLIALPVAAVIVVLLRHAREFYENSP 351


>gi|300361263|ref|ZP_07057440.1| permease [Lactobacillus gasseri JV-V03]
 gi|300353882|gb|EFJ69753.1| permease [Lactobacillus gasseri JV-V03]
          Length = 393

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 111/336 (33%), Gaps = 4/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++     F      PVL A I  +   P+      K +       ++  V V+   I
Sbjct: 42  ISFVLNPFWTFFNAILPPVLVASIQYYLMDPVVDWMEKKLKVPRIITIILLFVIVLGGLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      +   L+       Q        +   P          + +S  Q+   
Sbjct: 102 WIINTLIPIIQHQTDSLIKNWPAYWQDAQKGFEKMIHDPRLNGVRSGINQVISDAQTKMF 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        +  +    +   M      + ++     LFF  +DG  ++  +       
Sbjct: 162 KTGQDSFNLALSNLSSAVNVITM----IFMMLLTAPFVLFFMLKDGHRLNPYVTKFAPQK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +  +   +   + S   G   +A   G++    Y + G+   + L V+  ++ MIP
Sbjct: 218 LQPSFSSLLSDINGAVASYIRGQITVAFWVGVMFAIGYSVIGLNYGITLAVLAGVLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I L +  +      + +  AIE  +  + + P ++G  + +  + T   
Sbjct: 278 YFGTFIAFIPAIILGLISSPMMLVKVLIVFAIEQTLEGRVISPLVMGNKMNMNPVTTILL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+G     GL G+     + A+I +I        ++
Sbjct: 338 LIGASAVAGLWGVIFAIPVYAVIKIIVTRLFNYYRK 373


>gi|119962201|ref|YP_947065.1| permease [Arthrobacter aurescens TC1]
 gi|119949060|gb|ABM07971.1| putative permease [Arthrobacter aurescens TC1]
          Length = 426

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 107/344 (31%), Gaps = 14/344 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++  ++  L  +     PV+ A ++     P+ +   ++K  +      I  +  +
Sbjct: 35  LILLMIGAMVWLLGKVSFLIIPVMVAALLAGLLHPVVAWLRNRKVPN-GGAVAITVLGFI 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L  +    +     L  + +   Q                W ++      +   
Sbjct: 94  GVIGGALALVGRQLVTGFGALWQEALAGIQQIQT------------WLADGPLHLTADQI 141

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I        N    I   A  FG     +   ++  +  L FF  +G  I   L  L
Sbjct: 142 DQYISDGANALQNNSSSILSGALSFGSTAGHFAAGLVLALFILIFFLLEGPRIWAFLVRL 201

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                        R     + S       +A  + + +G    +  VP  + L V+  I 
Sbjct: 202 LPKSARRATDGAGRRGWTSMVSYVRIQMFVAFVDAVGIGVGAAIIQVPLALPLAVLVFIG 261

Query: 252 AMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP    + +     +  L+     NA  +     +   +    L+P ++G  + L  +
Sbjct: 262 SFIPVVGALVTGAIAVLLALVANGPINALIMLAIVLVVQQLESHILQPLVMGKAVALHPV 321

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +  G    G+ G      L+A++    +       E+ E
Sbjct: 322 AVILSVAAGSYLAGIPGALFAVPLLAVVNTAVRYIAGRTWEHDE 365


>gi|157370292|ref|YP_001478281.1| hypothetical protein Spro_2050 [Serratia proteamaculans 568]
 gi|157322056|gb|ABV41153.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 373

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/354 (19%), Positives = 137/354 (38%), Gaps = 4/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  +    L  L  +++ VL A+I+     P+         E +  ++++   
Sbjct: 8   KGFFILILFIVTAAFLDVLGPYYSSVLWAIILAVIFHPVKQKLKQYLGERNGLVSLLTVA 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +   PL  +     +E+  + +K+   N     V      +  G WA    T+H  
Sbjct: 68  VICLIVFTPLAIIASSLAIELNVVYTKLQGNNAQFPVVLADTLRVLPG-WARHFLTEHNL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  ++       G    ++ +    M+  LFF  +DG  +    
Sbjct: 127 DNAAEIQKKLSQVALQGGQYLAGSVFLIGKGTFNFAVGFGVMLYLLFFLLKDGPYLVNLT 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G  ++A  +G + G A+++ G+   +    + 
Sbjct: 187 LQALP-LSEHVKHHLFVKFAAVSRATVKGTVVVAAVQGALGGLAFYITGIEGSLLWAALM 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +   +IY    G ++    L  +  + + +VD  LRP LVG   K+
Sbjct: 246 AFLSIIPAVGSAIIWVPAAIYFFATGMLWKGLFLVGFFVVIIGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           P        +GG+   G+ G  IGP++ AL    W         E  ++I  +F
Sbjct: 306 PDYLILISTLGGMEIYGINGFVIGPLIAALFIACWNILSGRDSAETTDEIDEDF 359


>gi|299768601|ref|YP_003730627.1| hypothetical protein AOLE_01755 [Acinetobacter sp. DR1]
 gi|298698689|gb|ADI89254.1| hypothetical protein AOLE_01755 [Acinetobacter sp. DR1]
          Length = 372

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 164/353 (46%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIA 66
            + ++  +   +I +    LK F  PVL A II + +WPIY           +T  A + 
Sbjct: 9   QRVLLFGLFFILIFLGFNILKYFIVPVLWAAIIAYMTWPIYLRIQRFFGETRNTLNATLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
              V+ +  VP     +    E + L   +      G + VP ++ D+P           
Sbjct: 69  ISLVILVVGVPFTCAIFILQHEGRNLYFDLQRQVFSGHLSVPDFIRDLPFVGKEISRTLN 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L++  +  I +      +       +            + + F + +LFFFYRDG  I 
Sbjct: 129 ELNNDPNSTIQNVAAWVQSH----LSYGRVLLGEISKNIVKLGFAVFSLFFFYRDGQMIL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+    E +           + +  R+   G+ + AI + ++ G +Y++AGVP+ + L 
Sbjct: 185 SQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGLTAIAQAVLAGLSYFVAGVPNPMVLT 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T ++A+IP G PIS+  V ++L  +G    A  + +WG + +   D  +RP ++ G  
Sbjct: 245 IATFLLALIPFGTPISYLGVGLWLFSQGQTMEAIGVVVWGVVIVSSSDNVIRPLVISGAT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           K+PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E +    +
Sbjct: 305 KIPFLLIMFGVLGGIASFGLVGLFIGPVILAILLAIWREWLHETIEPEPMPKT 357


>gi|239632127|ref|ZP_04675158.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|239526592|gb|EEQ65593.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
          Length = 382

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 111/339 (32%), Gaps = 7/339 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+      F      P+LSA  + +   PI      K   S     ++  + V+   +
Sbjct: 20  VSFLFAPVATFFSTLLIPILSAGFLFYLFNPIVKLLQ-KFHISRNISILLIFLVVIGALV 78

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + +    + ++ + V+ +    +         S        +      +    +   
Sbjct: 79  LVFMAVLPNLIYQVTQFVTNIPDFLKGVRSFISKASHYTWYQRLN------IGKYVASLQ 132

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +S + + +  +                  +SII + + LF+F +DG +    +  +  H 
Sbjct: 133 ISPSKVLSKVLGGFSTGLPTVIGSVASMMISIITIPVMLFYFLKDGENFVPSIQKMLPHR 192

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   +   +     G  I  +  G      Y + G+P    LG I  I+ +IP
Sbjct: 193 YHEEVATVFTRLNSTLSHYIGGQAIECLFVGTFTFIGYLIIGMPYAYLLGFIAGIVTIIP 252

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +           + +   I        + P ++G  + +  L     
Sbjct: 253 YLGPYIGIAPALAIAATEGWTKMLLVVVVVVIIQMTDGNFIYPNVIGRSLDIHPLTIIIL 312

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      GLLG  +     A+I  +        + ++E
Sbjct: 313 LMVAGNLWGLLGTILAVPTYAVIKTVVTYLYELYRFHQE 351


>gi|257784261|ref|YP_003179478.1| hypothetical protein Apar_0456 [Atopobium parvulum DSM 20469]
 gi|257472768|gb|ACV50887.1| protein of unknown function UPF0118 [Atopobium parvulum DSM 20469]
          Length = 460

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 118/348 (33%), Gaps = 2/348 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +  ++    I    +  + L  L  L      +    I+ F   P+ +    +       
Sbjct: 17  QRGLMVWTAIGFAALFALALYVLGILGQAVELLAIGAIVAFVCSPVTNWLEDR-GIPRGI 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A  A +  + +F+  L+ +    +LE+  L+            + R          ++ 
Sbjct: 76  SAFAALILTLIVFVGFLILIAQPLVLELTTLLKNAPSYASQIGAMAREFWQNFDS-QSNP 134

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +             + +  + ++   A        +  +     ++  ++  +D 
Sbjct: 135 AVRQTVELVIERASSIGISVASGILSWLSTSALGNISSMANQLMVFFLGLVLAYWLAKDY 194

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I ++L  +        ++ I  I+ +       G  I +   G+++     + G P  
Sbjct: 195 PVIVRELAIIAGPQKEDEFRLILAILSRSTSGYMRGTIITSAVNGILVYFGCLILGNPYA 254

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             +G++T I  +IP   P+    +++ L I  +        +   +   +VD  L P ++
Sbjct: 255 ALIGMVTGIFHIIPVVGPVFSAGIALILSILVDPIMTVWTIVILMVAQNVVDNVLSPLVM 314

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              +K+    +  G+V G    G++G  +   L A +  I+       
Sbjct: 315 ATSVKVHPGLSLIGIVIGSALGGVVGTILAIPLTAALRGIFVYFFEKY 362


>gi|255282958|ref|ZP_05347513.1| membrane protein Lmo0908 [Bryantella formatexigens DSM 14469]
 gi|255266497|gb|EET59702.1| membrane protein Lmo0908 [Bryantella formatexigens DSM 14469]
          Length = 409

 Score =  145 bits (365), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 114/336 (33%), Gaps = 10/336 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVP 77
           +     P L   +I F   P+    I                    ++A + V+ + ++ 
Sbjct: 70  IVNILMPFLLGTLIAFILNPLIKWLIKLLSGPCRIKSQKVCKFTAIILAYLLVLGVIVIC 129

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +L++    ++ + E+V+ +    +        L D       SEL               
Sbjct: 130 ILYIVPQVVVSLTEIVANIPKLYEMTYDFFDNLQDRFPNADVSELQKIVDDILPDFVNTL 189

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + F+ +  I  +   +       +++ ++II  +  L        S+ + L       + 
Sbjct: 190 KNFV-SGLIPAVYNMSVSIAKGLVNFVIAIIVSVYMLTDKKDLKRSMKRILYCFVPVDYI 248

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               +I      +  +  +G  I +   G++      +  +P  + + VI  I  MIP  
Sbjct: 249 PKTLEILSECNSIFTNFIVGKAIDSTIIGVLCFILMSIFSMPYALLISVIVGITNMIPYF 308

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       + +L+  +   A    +   +        L P ++G  + L  L     + 
Sbjct: 309 GPFIGAVPGVIILLIIDPLTALGFAVLIFLLQQFDGLYLGPKILGDTVGLKPLWIIISIT 368

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G    G+LG+F+   ++A++  +    +    E +
Sbjct: 369 VGGSLAGVLGMFLSVPVVAVLRYLLNLYLEYRLEKR 404


>gi|317402762|gb|EFV83307.1| exported protein [Achromobacter xylosoxidans C54]
          Length = 373

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/335 (20%), Positives = 129/335 (38%), Gaps = 3/335 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +++ + +   + L  F+  V    I+     P+    + +        A+I    V+
Sbjct: 6   FLLLLVVVSIAFGWLLWPFYGAVFWGAILAILFAPLQRRLVPRIGGRRNLAALITLAMVL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L I+PL+ +    + E   L   +     +     +   +        +L  +      
Sbjct: 66  LLVILPLVVISGSLVREGANLYQSIKSGQINFGAYFQQAMEALP-PSVHDLLARFDLADI 124

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  +        F+   A   G     + +S   M+  LFF  RDG  ++Q++   
Sbjct: 125 PSLQEKLSAGAMQASQFLATQALSIGQDTFQFVVSFAIMLYLLFFLLRDGPQLAQRVKRA 184

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L   +   + R    V+R+T  G   +A  +G + G  + + G+   +  GVI   +
Sbjct: 185 VP-LSETHKHHLFRKFTTVVRATVKGNIAVAASQGALGGIIFSILGIQGALLWGVIMGFL 243

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P     + +  V+IY L+ G       L  +G + + +VD  LRP LVG   K+P  
Sbjct: 244 SLLPAVGAGLIWAPVAIYFLLTGATIKGVVLIAFGVLVIGMVDNVLRPILVGKDTKMPDY 303

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                 +GG+   GL G  IGP++ AL    W   
Sbjct: 304 VVLISTLGGMALFGLNGFVIGPLIAALFMASWDLF 338


>gi|238020241|ref|ZP_04600667.1| hypothetical protein GCWU000324_00116 [Kingella oralis ATCC 51147]
 gi|237868635|gb|EEP69639.1| hypothetical protein GCWU000324_00116 [Kingella oralis ATCC 51147]
          Length = 395

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 128/342 (37%), Gaps = 8/342 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +  ++++  ++   +FL G   P + A ++ +   P+ S   +         ++   + 
Sbjct: 51  WLAGFLLIAFLVAFFHFLGGILTPFIIAAVLAYILNPLVSKLEAH-GIKRGRASMWVMLF 109

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L    LL +    + +++ ++ K+     +         +   G + S       + 
Sbjct: 110 ALFLLTALLLVIVPMLVQQLQSIIQKLPQFADYIHRTALPWFNQKFGHYLSLNNETAANW 169

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +S     +T ++      +   AS           +I+ + + L++F  D         
Sbjct: 170 LRSNAQTIQTRIQQALPALMQSGASLATS-----LSNIVLLPLLLYYFLLDWARWEAGAT 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +   + +I+  +  V+     G  ++ +  G + G+   L G+ S  A+G++  
Sbjct: 225 ELVPRRYLDTYTRITGNMNTVLGEFLRGQLMVMLIMGTLYGTGLMLTGLESGFAIGMVAG 284

Query: 250 IMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  +P     +   ++        G+      ++   A+  F+    + P +VG  I L
Sbjct: 285 ILVFVPYLGAFTGLLLATLAALLQFGSWHGLVSVWAVFAVGQFLESFLITPKIVGDKIGL 344

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                 F L+   + +G +G+ +   L A+  V+ +E   A 
Sbjct: 345 SPFWVIFSLMAFGQLLGFVGMLVALPLAAVCLVLLQEGKQAY 386


>gi|167566605|ref|ZP_02359521.1| Predicted permease PerM family protein [Burkholderia oklahomensis
           EO147]
 gi|167573685|ref|ZP_02366559.1| Predicted permease PerM family protein [Burkholderia oklahomensis
           C6786]
          Length = 352

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 135/346 (39%), Gaps = 3/346 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + Q     ++  + +   + L  FF  +    I+     P+     ++  +     A++
Sbjct: 5   NDHQKFFHLLLFVVTVGLCWILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLAALV 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ + I+PL F+    + E+  +  ++     +     + +           L   
Sbjct: 65  TLSLIILIVILPLAFVAGTLVQEITYVYQQIKTMQPNMTQYFQDIMHALPTSVHRVLHNY 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+   S++             F+   A   G     + +S   M+  +FF  RDG  I 
Sbjct: 125 GLTDIASIQKKLTDG-AAAISQFVATQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   + + +      V+R+T  G   +A  +G + G  +W+ G+   +  G
Sbjct: 184 RRVRRALP-LAEDHKQHLLTKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWG 242

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P     + +   + YL + G I+    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGAGLVWVPAAGYLAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            K+P        +GG+   G+ G  IGP++ AL    W     A +
Sbjct: 303 TKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARAEQ 348


>gi|289768697|ref|ZP_06528075.1| conserved hypothetical protein [Streptomyces lividans TK24]
 gi|289698896|gb|EFD66325.1| conserved hypothetical protein [Streptomyces lividans TK24]
          Length = 402

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 107/357 (29%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +         + + L G    VL A  +     P  S    +     
Sbjct: 2   PRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINVLIAFFLALAIEPAVSWMAGR-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F   +  ++V+      +  L      ++ ++V +        I               
Sbjct: 61  GFATFLVFLAVLIAAAGFVTLLGSMLAGQIVKMVEEFPDYLDSVINWVNGH--------- 111

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +   L      + L  +    N +              L     ++ +++  F+F  
Sbjct: 112 ---FHTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVLGGLFQLLTVLLFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+       +  VP
Sbjct: 169 DGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALVSGVAHYILLEILEVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +    N + A  + ++  I     +  L+P
Sbjct: 229 YAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVIYQQFENYVLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|209695990|ref|YP_002263920.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009943|emb|CAQ80257.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 361

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 139/357 (38%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +  P++ A I+     P+++    K  +S    A
Sbjct: 6   KLNSSHWVLVTALLVASYACFLLIEPYLNPIILAFIMSLLFAPLHNKISEKLPKSPNSAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++  ++  +  +PL F+F   + +              G I        +   +     
Sbjct: 66  ILSCTALTFIIAIPLFFVFVAIVQQGATFSKDAYHWITEGGIQTLFQHPIVSQILAFINK 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +   +        L +     +   +++      +  ++   M+  LFF  RD  
Sbjct: 126 HLPFDAIDPNEITQKVAQLASQVGTKVVGVSAQILGDATNVLVNFFLMLFVLFFLLRDQD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I      +   L  +   ++   + +V +S  LG  + AI +GL  G A WLAG P   
Sbjct: 186 KIISAFRHVLP-LSRSQEDRLLDEIEEVSKSAILGSFLTAIAQGLAGGFAMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYLL+      A  L +WG + +  +D  +RP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATIYLLLTNQWEWAIFLTVWGVLVVGSIDNIVRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG+   GL+GL  GP++ AL  V++       K   ++   N
Sbjct: 305 GNSGMNTLLIFFSLLGGIHLYGLIGLIYGPLIFALTFVLFNMYETEFKGFLDQQDKN 361


>gi|259046341|ref|ZP_05736742.1| transport protein [Granulicatella adiacens ATCC 49175]
 gi|259036978|gb|EEW38233.1| transport protein [Granulicatella adiacens ATCC 49175]
          Length = 389

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 121/326 (37%), Gaps = 5/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV    +I +   PIY   ++K +       ++  V V+ +FI+ +  L    
Sbjct: 52  FISAIGVPVACGAVIYYLVKPIYDYLLNK-KVPKGIAILLVMVGVIVIFIMIITSLVPII 110

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ +LVS++    Q                   E + K  +            +    
Sbjct: 111 QKQLLDLVSQLPYYYQIISEQVEKFMQTGFFETIQEQFNKINTDFIQSITERLNGILNFT 170

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I       G    D  ++I+ M + L++  +DG  +   +  +           +  
Sbjct: 171 FSGIGSVVGIIG----DIVITIMTMPVILYYLLKDGNKVIPFVTRMFPTRSQHKISVMLN 226

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G   +AI  G      Y L G+P  V +G+I  ++ +IP    I     
Sbjct: 227 EMNQQVSSYIRGQITVAICVGFTYIIGYTLIGLPYGVTIGMIAGLLTIIPYLGSIIGLTP 286

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    N   A  +FL   IE  I  + L+P ++G  +K+  +     L+   +  GL
Sbjct: 287 ALIIGFVTNPTLALHVFLVFVIEQLIESRVLQPLILGSSLKMHPVTILIILLAAGKMFGL 346

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
           +GL I   + A++ V         KE
Sbjct: 347 VGLLIAVPVYAVVKVFITHFFAWYKE 372


>gi|296115151|ref|ZP_06833792.1| hypothetical protein GXY_05201 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978252|gb|EFG84989.1| hypothetical protein GXY_05201 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 387

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 104/343 (30%), Gaps = 10/343 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   + + +++VS++ +      + +A ++      +      +          I  + +
Sbjct: 53  LRLALTVTVLVVSIWLVGDVLMVLFAATLVAVILHNLAGHLERRTRLPYWVALSIVVLII 112

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      +         +   L + +    +            PG M    L +    + 
Sbjct: 113 ISALTALIWSSGPEISEQALRLRAALSEQARTLRDRMD--DSTPGRMILDNLPSSFGGNE 170

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S        +  +   F+       G +          ++IA  +F          +  
Sbjct: 171 HSSGGSGFGSIAGSMTGFVTSAFGAAGTL--------AVILIAGLYFAISPEIYVNGMLR 222

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L    +    + +     + + +   G  +     GL+     W+ GVP  +ALGV+  +
Sbjct: 223 LVPREYRMRTRDLLLTAGQTLWAWTAGQALDMTVVGLLSFIGLWIIGVPLALALGVVAGL 282

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
              IP          ++ + +         +    A   F     + P +    +K+P  
Sbjct: 283 ANFIPYIGAFVGAVPAVLIGLSQGTREGLTVLGLYAAIQFFEGNVMAPLIQRHAVKMPPG 342

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            T          +G+ GL +   L A +  +   +   + +++
Sbjct: 343 LTILSQTIFGTILGIPGLILASPLTAALLAMMDRATPQLSDDE 385


>gi|257888574|ref|ZP_05668227.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257897049|ref|ZP_05676702.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378740|ref|ZP_06624898.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|257824628|gb|EEV51560.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833614|gb|EEV60035.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|292642668|gb|EFF60820.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 372

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 7/330 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 40  FFSTLFAPVLIAGFLYYLLNPIVKLLM-KAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 99  VQQISSLASSMPDFIKQVESWLKEVAELPVFKEVD------INKYFEQLDISYGTIIQQF 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 153 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 213 QLNKTLANYISGQAIECLFVGTFTFLGYMIIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + I  +   A    L   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 273 AFLVTIFNDPIKALLCCLVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 332

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LG+F+G    A+   I    I  IKE+K+ 
Sbjct: 333 LGIFLGVPFYAICKTIISYIIKIIKEDKQN 362


>gi|116334063|ref|YP_795590.1| permease [Lactobacillus brevis ATCC 367]
 gi|116099410|gb|ABJ64559.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 395

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 110/320 (34%), Gaps = 5/320 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A +  +   PI     +K     T+      V V  L    ++ L      ++  
Sbjct: 57  LPIVLAGVGYYLLNPIVDWLETK-HVKRTWSISGLFVIVAGLLAWGIISLIPMIQQQVTG 115

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L+++     +                   +   +           + + L  N +  +  
Sbjct: 116 LITEWPHYWREITNTTMHWLKDDRLDGIRKQLEQFNQQLSDSSSSAISSLAKNTVSSVGG 175

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             SR   I +            LF+  RDG  + + L  L           + R +   +
Sbjct: 176 IVSRVVSIAVAVVT----APFILFYLLRDGHRLPEYLARLFPIKRREDVVHLLREMNLQV 231

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            +   G  I+A    ++    + + G+P  + LG+   I+ ++P           + +  
Sbjct: 232 SNYVRGQLIVAFIVAIMFYIGFLIIGLPFALLLGISAGILNLVPYLGSFLAMVPVVIVAA 291

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             + +    + +   IE  +  + + P ++G  +K+  L   F L+   +  G++G+ +G
Sbjct: 292 FISPWMLIKVLIVFVIEQTLEGRAISPLVLGSSLKIHPLTIIFILLVAGKAFGVVGVVLG 351

Query: 332 PVLMALIAVIWKESIMAIKE 351
               A+I VI  E     ++
Sbjct: 352 IPGYAVIKVIATEFFQWYQK 371


>gi|269103476|ref|ZP_06156173.1| predicted permease [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268163374|gb|EEZ41870.1| predicted permease [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 362

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/363 (18%), Positives = 146/363 (40%), Gaps = 5/363 (1%)

Query: 1   MRETMLN--PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M +         ++   ++     S   ++ +  P++ A+II     P++     K   S
Sbjct: 1   MSQPFKVESRHWMLVVALVIAGYASYRIIEPYLGPIIMAVIISLLCHPMHEKIRGKMPGS 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPGGM 117
               ++++   +  + ++P+L +F   + +      +       G     +    +    
Sbjct: 61  PNIASLLSCTLLTFIIMIPMLVVFSSIVHQGTTFSKESYTWLTDGGAKELFAHPYVQKSF 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + ++   S      +     + +     +   +++      ++ +S I M+  LFF 
Sbjct: 121 ALIDKYSPFKSIDPQEVLQKIASIASQLGSTLLNVSTKLLGDVTNFLMSFILMLFVLFFL 180

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RD   +   + ++   L  +    +   V  V +S  LG  + A+ +G+  G A WL G
Sbjct: 181 LRDHDKMVATVRNVLP-LSRSQEDALFSEVQTVAKSAVLGSFMTALAQGVAGGFAMWLCG 239

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P      ++     +   G  + +   ++YLL+ G    A  L  WG I +  +D  LR
Sbjct: 240 FPGLFWGSMMAFASFIPVVGTALIWVPATLYLLLLGQWEWALFLTGWGIIVVGSIDNVLR 299

Query: 298 PFLV-GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P L+ GG   +  L  FF ++GG++  GL+GL  GP++  +  V++K   +  K+  E  
Sbjct: 300 PLLMQGGDSNMNTLLIFFSILGGLQLFGLIGLIYGPIIFGVTLVLFKLYEIEFKDFLEHQ 359

Query: 357 SSN 359
             +
Sbjct: 360 DRS 362


>gi|188533650|ref|YP_001907447.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
 gi|188028692|emb|CAO96554.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
          Length = 379

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/354 (20%), Positives = 136/354 (38%), Gaps = 4/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++    L   + L  +F+ +L A I+     P+ S       + +   ++I   
Sbjct: 8   KGFFIFILAATTLGFFHILGPYFSAILWAAILAIIFHPLKSKIRKYCRDKNGLASLITLF 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  +PL  +     +E   L S++         V   + +     W      ++  
Sbjct: 68  IICLIVFIPLAVVASSLAIEFNALYSRIQGDQTELTTVAASVVNHLP-DWLRHFLAENNL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +  S      + +   G  F        G     + +    M+  LFF  +DG  +    
Sbjct: 127 NDASAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFFLLKDGAYLVGMA 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G  ++A+ +G + G A+W AG+   +  G + 
Sbjct: 187 LDAIP-LSRFVKHHLFVKFAAVSRATVKGTVVVAVVQGTLGGIAFWFAGIQGSILWGSLM 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +  V +Y    G +     L  +  + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLIPAVGSAIIWLPVVLYFFFSGAMIKGLLLTFFFVVVIGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           P        +GG+   G+ G  IGP++ AL    W        K N +KI S+F
Sbjct: 306 PDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRDHKGNTDKIDSDF 359


>gi|121594252|ref|YP_986148.1| putative GAF sensor protein [Acidovorax sp. JS42]
 gi|120606332|gb|ABM42072.1| putative GAF sensor protein [Acidovorax sp. JS42]
          Length = 824

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 110/358 (30%), Gaps = 21/358 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T+ + + ++  +I  +++  LYF +    P+  A ++ F   P+ +    +      
Sbjct: 41  MDATVPSLRFMIGLVIAALVVAGLYFGRTLLVPLALAFLLSFVLEPLVAQL-KRMGLPRL 99

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +   ++++ +  V  LF+      E +EL +++           R L          
Sbjct: 100 PSVIAVVMAMLMVLGVGALFVG----NEARELSAQLPSYQNTIRKKLRSLRQQLRAPGMF 155

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSI 167
           +   +     Q     +   L                                       
Sbjct: 156 DGAKRTFDIVQREVEAAAPALSGVARAPTVQKVQVQPPVLSPANQLMAALSAVSGPLTQA 215

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +++ + F   D   +  +L  L                   I        ++ +  G+
Sbjct: 216 GLVLVFVIFILLDRVDLRDRLLRLWGGNL-HRATDAMDEAGDRITRYLTMQLLVNVTYGI 274

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
            + +  WL GVP  V  G + A+M  +P   P    A  + L    +      L+  G I
Sbjct: 275 PMAAGLWLIGVPGAVLWGSLAAVMRFVPYLGPFIAAAFPLTLAFAVDPGWDLVLWTLGLI 334

Query: 288 ELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L   + +  + P+L G    L  L             G +GL +   L   + VI +
Sbjct: 335 VLLELVSNNVIEPWLYGSSTGLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVIGR 392


>gi|163740901|ref|ZP_02148294.1| membrane protein [Phaeobacter gallaeciensis 2.10]
 gi|161385892|gb|EDQ10268.1| membrane protein [Phaeobacter gallaeciensis 2.10]
          Length = 381

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/342 (17%), Positives = 124/342 (36%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   +I V L+ L     P +    I +   PI     +    S T    + TV  + LF
Sbjct: 40  IAAVVIAVVLWALGDVLLPFVLGAAIAYLIDPIADRLEA-MGLSRTAATAVITVFAVLLF 98

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + LL +    + +M +L   +  A ++     +           +       S  Q   
Sbjct: 99  AIILLVVVPTLIYQMLDLAKVLPEAFKNLRDFVQ---------QQAPSLFDEGSRAQQTI 149

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +     L++  I  +         + ++  +  + + +   +   D   +  ++D L   
Sbjct: 150 VSIAQTLQSKAIGVLEGVVGSAVSL-VNVLILFVIVPVVAVYLLLDWDRMVARIDELLPR 208

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + KV+ S   GM  + +  G     A  L G+   +A+G I  ++  I
Sbjct: 209 DHAPTIRELAARIDKVLASFIRGMGTVCLILGTYYAVALMLVGLNFGLAVGFIAGLVTFI 268

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+ ++   +    AI   I    L P LVG  + L  + 
Sbjct: 269 PYLGALIGGALAIGLALFQFWGDWWSIGMVAGVFAIGQVIEGNLLTPKLVGNSVGLHPVW 328

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + VI +  +    +++
Sbjct: 329 LLLALSVFGALFGFVGMLIAVPVAAALGVIARFLVEQYLDSR 370


>gi|295695749|ref|YP_003588987.1| protein of unknown function UPF0118 [Bacillus tusciae DSM 2912]
 gi|295411351|gb|ADG05843.1| protein of unknown function UPF0118 [Bacillus tusciae DSM 2912]
          Length = 355

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 116/324 (35%), Gaps = 11/324 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L  +     P + ALII +   P+  + + ++        +I     + +  V  +  
Sbjct: 35  WALGLIGSVATPFVVALIISYLLNPVVEALVKRRV-PRGISILIIYAIFLLISAVAAVQG 93

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++K L + +             L+            T++L       + +    
Sbjct: 94  IPALVEQVKALAANLPETVHRIDQWLNELAR----------QTRYLPDGIQQAVENHLNQ 143

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                              +   LS   +   +F+  +D   + + + SL       +WK
Sbjct: 144 LERWAGQFLGQVVASLGATVGQVLSAFVVPFLVFYLLKDLKMVERVVLSLAPREQRDFWK 203

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           K+ + +   +     G  ++    G++  + Y + G+P  + +  I A+  +IP   P  
Sbjct: 204 KLLQEIDDALGRYVRGQLLVMALVGVLTYAGYLIIGLPFSLLMASIVAVANIIPYVGPFI 263

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             A +  + +  +   A  + L   I   I    + P +VG  + +  L   F L+ G +
Sbjct: 264 GLAPAALIGLTISPAMALKVLLVNLIVQQIESNFISPAVVGRSLDIHPLAIIFALLLGGQ 323

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
             G+ G+     ++A++ VIW+  
Sbjct: 324 LAGIAGMVFAVPVLAVLRVIWQHW 347


>gi|116492957|ref|YP_804692.1| permease [Pediococcus pentosaceus ATCC 25745]
 gi|116103107|gb|ABJ68250.1| Predicted permease [Pediococcus pentosaceus ATCC 25745]
          Length = 380

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 108/320 (33%), Gaps = 4/320 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A ++ +   P+      + +        I  V +  L I  ++ +      +   L
Sbjct: 60  PIILAGVLYYLINPLVDKLEQRFKLKRVLSITIIFVLITILIIAGIVSVIPVIREQSAAL 119

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +         G+         P      +     +    S  + S +   T  +D     
Sbjct: 120 IKNWPDYWNSGVEKVEGFLKDPRLGDLKKQ----IDGIGSNTVQSWSKKATEFVDNTVTS 175

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                 +     + II M   LF+  +DG  +   +  +        + +I   +   + 
Sbjct: 176 LGSVIGLITKIVIGIITMPFILFYLLKDGHRLPHFIAQVFPVKRRDGFIQILTEINTQLS 235

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  I+A    ++    Y + G+   + LGV    + +IP          SI +   
Sbjct: 236 QYIRGQLIVAFFVAVIFFIGYSIIGLKFALTLGVAAGFLNLIPYLGSFLAMVPSIVIGAF 295

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +      + +   IE  I  + + P ++G  + +  +     L+   +  GL+G+  G 
Sbjct: 296 VSPIMLVKVLIVFVIEQTIEGRFVSPLVLGSNLDIHPVTILVVLLASGQIFGLVGVIFGI 355

Query: 333 VLMALIAVIWKESIMAIKEN 352
              A++ V++     A K+N
Sbjct: 356 PAYAVLKVLFIHGFRAFKKN 375


>gi|24379852|ref|NP_721807.1| putative membrane protein; permease [Streptococcus mutans UA159]
 gi|24377825|gb|AAN59113.1|AE014978_4 putative membrane protein; possible permease [Streptococcus mutans
           UA159]
          Length = 389

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 105/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L FL     P++ + ++ +   PI      +   S      I  V +  L +  +   F
Sbjct: 49  LLSFLAVIMLPLVISALLYYLLKPIVDFIERR-GTSRVMAITIVFVIIAGLLVWGIANFF 107

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++   +  +    +        L                +++     +       
Sbjct: 108 PMLNEQLTSFIKYLPSYVRSVDAQVSKLLRNDLLASFRPQIEDAVTNFSQKAVDYAETFS 167

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              + +   FAS    + +   +S   +     +  RD   + +   S           +
Sbjct: 168 KGAVTWAGNFASLIARVTVAIIISPFIVF----YLLRDSSKMKEAFVSYLPTKMRQPIHR 223

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   V + +     G   +AI  G +    + + G+   V  G+I   + MIP       
Sbjct: 224 ILGDVNRQLAGYVQGQVTVAIIVGFMFSIMFTIIGLRYAVTFGIIAGFLNMIPYLGSFLA 283

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T     L +         + L   +E  I  + + P ++G  + +  +   F L+     
Sbjct: 284 TIPVFILALVEGPVMVVKVALVFIVEQTIEGRFVSPLVLGSKLSIHPITIMFILLTAGSM 343

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G+ G+F+G  + A I V+ KE     K
Sbjct: 344 FGVWGVFLGIPVYASIKVVVKEIFEWYK 371


>gi|126725674|ref|ZP_01741516.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacterales
           bacterium HTCC2150]
 gi|126704878|gb|EBA03969.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacterales
           bacterium HTCC2150]
          Length = 357

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/354 (17%), Positives = 124/354 (35%), Gaps = 15/354 (4%)

Query: 1   MRETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+  +   Q    W +++ +IL  L+ L     P L    I +   PI      +   S 
Sbjct: 1   MKMGLPVQQQAKYWGIVVAVILGILWVLGDVIMPFLLGGAIAYCLDPIADRLE-RMGLSR 59

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T    + T+  + +FIV  L +    + +   LV     A                    
Sbjct: 60  TIATTLITLLAILVFIVMALLVVPTLVRQSVALVEFAPQAFSDLQKFL----------TE 109

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                          + S           +        +  L+  + ++ + +  F+   
Sbjct: 110 KFPSLMDAESTLRQSLQSLGETIRAKGGDLLNGLVTSAVSLLNILVLVVIVPVVAFYLLL 169

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D  ++  ++D L         ++++R + + + S   G   +   +G    +A  LAG+ 
Sbjct: 170 DWDNMVAKIDDLMPREHRDVIRQLAREIDRTLASFIRGQGTVCAIQGAYYAAALMLAGLQ 229

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTL 296
             + +G +  +++ IP    +    ++I L      GN      + +  A+  F+    L
Sbjct: 230 FGLVVGFVAGLISFIPYIGALFGGVLAIGLALFQFWGNWLMIGIVVVIFAVGQFVEGNIL 289

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            P LVG  + L  +   F L       G +GL +   L A + VI + +I+  K
Sbjct: 290 TPKLVGESVGLHPVWLLFALSVFGLLFGFVGLLVAVPLAASLGVIIRFAIVQYK 343


>gi|261340952|ref|ZP_05968810.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
 gi|288316812|gb|EFC55750.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
          Length = 369

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 141/355 (39%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  +       L  +F+ +L A I+     P+ +   +   E +   + +  
Sbjct: 7   TKGFFILILALVTWAFFDVLSPYFSAILWAAILTIIFNPVKNKLRTALGERNGLASFLTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +  +PL  +     +E+  + +K+   N     V   + +     WAS     H 
Sbjct: 67  CIICLIVFIPLTVILSSLAIELNVVYTKLQQNNTQFPEVVAGVFNRLP-DWASGFLADHD 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      +     G  ++   A   G     + +S   M+  LFF  +DG  + +Q
Sbjct: 126 LTNAAEIQKKLSDAALKGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G + G A+ + G+   +  G +
Sbjct: 186 ILDSLP-LSDFAKQHLFAKFVGVSRATVKGTAVVAVVQGTLGGIAFAIVGIDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +   +IYL     I+    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLVPAVGSAIVWVPAAIYLFATHQIWQGLFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        + N E++ + F
Sbjct: 305 MPDYLILISTLGGMELYGINGFVIGPLIAALFIACWNLFSGRDHEGNAEELDAEF 359


>gi|225627209|ref|ZP_03785247.1| permease [Brucella ceti str. Cudo]
 gi|260563757|ref|ZP_05834243.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260566711|ref|ZP_05837181.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|261757926|ref|ZP_06001635.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|265999531|ref|ZP_05466792.2| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|225618044|gb|EEH15088.1| permease [Brucella ceti str. Cudo]
 gi|260153773|gb|EEW88865.1| ATP/GTP-binding protein [Brucella melitensis bv. 1 str. 16M]
 gi|260156229|gb|EEW91309.1| ATP/GTP-binding protein [Brucella suis bv. 4 str. 40]
 gi|261737910|gb|EEY25906.1| ATP/GTP-binding protein [Brucella sp. F5/99]
 gi|263094520|gb|EEZ18329.1| ATP/GTP-binding protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326408734|gb|ADZ65799.1| permease [Brucella melitensis M28]
 gi|326538454|gb|ADZ86669.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 413

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 44  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 102

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 103 LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 162

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 163 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 217

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 218 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 277

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 278 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 338 VGLHPVWLMFALFAFGSLFGFTGML 362


>gi|306842023|ref|ZP_07474696.1| permease [Brucella sp. BO2]
 gi|306287864|gb|EFM59284.1| permease [Brucella sp. BO2]
          Length = 413

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 44  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 102

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 103 LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 162

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 163 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 217

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 218 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 277

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 278 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 338 VGLHPVWLMFALFAFGSLFGFTGML 362


>gi|217974961|ref|YP_002359712.1| hypothetical protein Sbal223_3812 [Shewanella baltica OS223]
 gi|217500096|gb|ACK48289.1| protein of unknown function UPF0118 [Shewanella baltica OS223]
          Length = 356

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 160/348 (45%), Positives = 224/348 (64%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   I R +++ ++   ++F   F  P L+ALI+ F+SWP+Y   ++K    S   A
Sbjct: 3   PIFSNAAIGRSLLILLLCAGVFFFIDFLVPALAALIVCFSSWPLYQKLLAKCGGRSALAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA   ++   I+PL+F+F Y + E++  V  +V  NQHG PVP W+ D+P       L 
Sbjct: 63  TIALCCIVLGLIIPLVFVFSYALQEIRTWVDWLVFTNQHGSPVPLWIKDLPWMGEWLTLQ 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +             + +    +  I R+  + G   L   L+++FM+I LFF Y+DG  
Sbjct: 123 WQQFIGEPHELGKIISAISGQNLSGISRWVLQLGWNTLGLLLTLLFMLITLFFLYKDGQQ 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++QLD +GE + PA W   SR+VP  + ST +GMT+IAIGEG+VLG AYW+AGVPS VA
Sbjct: 183 VAKQLDIVGERVLPARWHSFSRVVPATVSSTVIGMTLIAIGEGIVLGIAYWIAGVPSAVA 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            GV+TA MA++PGGAP  FT +S+YL+  G++     LFLWG+IELFIVDKTLRP LVGG
Sbjct: 243 FGVLTAFMALVPGGAPTMFTLISLYLVGTGDMTAGVGLFLWGSIELFIVDKTLRPNLVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           PIKLPFLPTFFGL+GGV+TMG +GLF+GPVLMAL+  IW+E +    E
Sbjct: 303 PIKLPFLPTFFGLIGGVKTMGFVGLFVGPVLMALLVAIWREWLREEPE 350


>gi|311068972|ref|YP_003973895.1| hypothetical protein BATR1942_10155 [Bacillus atrophaeus 1942]
 gi|310869489|gb|ADP32964.1| hypothetical protein BATR1942_10155 [Bacillus atrophaeus 1942]
          Length = 369

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 114/333 (34%), Gaps = 6/333 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I F+    + F +  F P++ + ++ +   P+     +K +       ++  ++   LF
Sbjct: 30  LIDFLFRPFIIFCQTLFGPIILSGVLYYLFRPLVKLLHTKAKLPKGIAILLIYLTAGGLF 89

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + +         +    VS               +          E          +  
Sbjct: 90  TLFIYTAGPEIQKQFNSFVSNFPTLLDQARDWIETIQHNKWFSRLQEQ------SSLNQI 143

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               T    + I  +            +  ++I+ +   L++  ++G    + L      
Sbjct: 144 TDKVTNYSNSFISSLGDNIKSMAGAVTNAVITIVIIPFVLYYMLKEGEKAPRYLLHFLPK 203

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K+I   + + + +   G  I++   G+++   Y++ G+   + LGV+  +  +I
Sbjct: 204 KQQKEGKRILEDMDQTLSAYIQGQIIVSCCVGVLVTIGYFIIGLDYPLMLGVVAMVTNVI 263

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P   T   + + +  +   A  + +   I   I  + + P ++G  + +  L   F
Sbjct: 264 PFIGPWIGTFPGVVVGLFDSPTTAILVIVVVVIAQQIESQIISPQVMGRKLSIHPLTIIF 323

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L+      G++G+ +     A+  VI      
Sbjct: 324 LLLAVGNFAGIVGMLLAIPGYAVAKVIVSHIWR 356


>gi|297156749|gb|ADI06461.1| hypothetical protein SBI_03340 [Streptomyces bingchenggensis BCW-1]
          Length = 403

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 103/352 (29%), Gaps = 18/352 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +         +   L G    +L A  +     P      ++     
Sbjct: 34  PRWLPRAMVLALALVACYRLATWAFDQLTGLLLNILIAFFLALAIEPAVDRMAAR-GVRR 92

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + ++         L      ++  +V          +            +W 
Sbjct: 93  GVATGLVFLGILIGVAGFFTLLGSMLADQIMTMVEDFPKYLDQLV------------IWV 140

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E +   LS  +    +  +    + +              L     ++ + +  F+F  
Sbjct: 141 NETFHTELSRVEIQDSVLHSDWLQSYVRNSANNVLDVSAQVLGGLFRVLTVTLFAFYFAA 200

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+         GVP
Sbjct: 201 DGPRLRRALCSVLPPTRQAEVLRAWEIAVAKTGGYIYSRGLMALISGVAHYVLLEWLGVP 260

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +++  IP        A+ + +      + A  + ++  I     +  L+P
Sbjct: 261 YAPALAVWVGLISQFIPTIGTYLAGALPMLIAFTVEPWYALWVLVFVVIYQQFENYLLQP 320

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +    + +    +F  ++ G   +G +G  I     A +       I    
Sbjct: 321 RITARTVDIHPAVSFGSVIAGTALLGAVGALIAIPATATLQAFLGAYIKRYD 372


>gi|306838770|ref|ZP_07471604.1| permease [Brucella sp. NF 2653]
 gi|306843673|ref|ZP_07476273.1| permease [Brucella sp. BO1]
 gi|306275983|gb|EFM57692.1| permease [Brucella sp. BO1]
 gi|306406172|gb|EFM62417.1| permease [Brucella sp. NF 2653]
          Length = 413

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 44  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 102

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 103 LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 162

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 163 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 217

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 218 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 277

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 278 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 338 VGLHPVWLMFALFAFGSLFGFTGML 362


>gi|156742454|ref|YP_001432583.1| hypothetical protein Rcas_2485 [Roseiflexus castenholzii DSM 13941]
 gi|156233782|gb|ABU58565.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 435

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 102/343 (29%), Gaps = 11/343 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + ++ I   L+  +    P +  L++ +   P    F            ++  +
Sbjct: 58  RWSLVALAVYSIGWMLWTTRPVLIPFIIGLVLAYLMAPAVDFFDRWM--PRWLSILVVYI 115

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                       +    + +++ L+ ++    +        +           L      
Sbjct: 116 LGFLGIAATFALIIPPLIEQVERLIHQLPSF-REVQTFIDSIIRQYRDQVPPSLQQPIED 174

Query: 129 HPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              +L    +  + T                +  + + L  I + I LF+   D      
Sbjct: 175 SLANLLRSLQNNIDTYLQRGGAFLLNQLIQLLNTVTFILGFISLPIWLFYVLYDKHRGRV 234

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV------PS 240
             + L      + +  +  IV +V+     G  I+ +  GL +G       +        
Sbjct: 235 FFNQLVHPRARSDFWNVWDIVNRVLGGYIRGQIILCVSVGLAVGIGLVGLEMLGFPLGDY 294

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L +I  +   IP   P       + L    +      + L       + +  L P +
Sbjct: 295 ILVLSLIAGVTEFIPVLGPTIGAIPGVILGFGISPTAGIAVLLLYIAVQQLENSLLVPRI 354

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +G  + +        ++      GL G+ +    +A +  ++K
Sbjct: 355 IGESVGVHPAVLTVAMIVMGTLFGLFGILLAAPAVATVRDLFK 397


>gi|149377701|ref|ZP_01895436.1| hypothetical protein MDG893_12430 [Marinobacter algicola DG893]
 gi|149357986|gb|EDM46473.1| hypothetical protein MDG893_12430 [Marinobacter algicola DG893]
          Length = 371

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/353 (22%), Positives = 146/353 (41%), Gaps = 5/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                  M++ + L  +  +K FF P+  A+ I     P+      +  +    +A++  
Sbjct: 6   ETRTFLAMLVGVSLAFILLMKPFFGPIFWAVAIALIFHPVREYLARRLGDRPNTIALLTL 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  M + ++P+L L    + E   L  ++       +    ++  +     A E +    
Sbjct: 66  LICMVIVVIPVLGLVTSLVAEGLSLYQRIQEGQ---LRPGDYIDRVIQSFPAIESFFAQF 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +            G  F+ + A  FG     + L +  MI   FF  RDG  +   
Sbjct: 123 GLDFAEVRDRVVSGFVGGSQFLAKQALGFGQNTFQFFLGLALMIYLAFFLLRDGSKLVDL 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L     + +     +V R+T  G  +IA+ +G + G  +W+ G+   +  GV+
Sbjct: 183 LIRALP-LGDERERLLFAKFAEVTRATVKGNLLIAVIQGALGGGIFWILGIQGALLWGVV 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            AI++++P  GA + +   ++YL   G + +A  L  +G I + + D  LRP  VG   K
Sbjct: 242 MAIVSLLPAVGAALVWVPAALYLAATGEMVSAIVLTAFGVIVIGLADNLLRPVFVGRDTK 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LP        +GG+   G+ G  +GP++ AL    W   I    E+++  S N
Sbjct: 302 LPDYIVLLSTLGGIVMFGINGFVMGPLVAALFMAFWGIFIREFGESEQAPSVN 354


>gi|294852072|ref|ZP_06792745.1| hypothetical protein BAZG_00988 [Brucella sp. NVSL 07-0026]
 gi|294820661|gb|EFG37660.1| hypothetical protein BAZG_00988 [Brucella sp. NVSL 07-0026]
          Length = 413

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 98/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P +  + + +   P+      K   S    +++  
Sbjct: 44  RQAGFWLGAMAFFVLFLVVFSSVLLPFVVGMALAYFLDPVADRLE-KVGLSRLAASIVIL 102

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 103 LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 162

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 163 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 217

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 218 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 277

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 278 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 338 VGLHPVWLMFALFAFGSLFGFTGML 362


>gi|323529942|ref|YP_004232094.1| hypothetical protein BC1001_5660 [Burkholderia sp. CCGE1001]
 gi|323386944|gb|ADX59034.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 372

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 172/347 (49%), Gaps = 5/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 29  ERVKKQKAASLALYIGLVLLALWVVRDFLPVVGWAGVLAIALWPLLRRVEGSRWLSGRTT 88

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AV+ T+++  L ++P+       + E  +L      A + GI +P ++  +P G   +
Sbjct: 89  LIAVVLTLAIALLVVLPVGIGIAQALREAHDLSDWFKAAQETGIAMPDFIHRLPFGAREA 148

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W +      +  +     +K      +      FG   +       FM++ LF  ++ 
Sbjct: 149 EAWWQA---YLAAPLRDSAAMKGLHSTTVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQA 205

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S  L    +  F     ++   +   +R T  G+ ++ +GEG +LG AY++ G+P 
Sbjct: 206 GPRLSGALARGLQRGFGEDGAQLVERMAIAVRGTVSGLVVVGLGEGALLGVAYFVTGLPH 265

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L +ITAI AM+P  API+F   +++L  +G++  A  L ++G++ +F+ +  +RP L
Sbjct: 266 VALLALITAIAAMLPFCAPITFGLAALWLFSQGSVAGAIGLLVFGSVVVFVAEHFVRPVL 325

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W + + 
Sbjct: 326 IGSSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTDLVQ 372


>gi|222110889|ref|YP_002553153.1| phytochrome sensor protein [Acidovorax ebreus TPSY]
 gi|221730333|gb|ACM33153.1| putative phytochrome sensor protein [Acidovorax ebreus TPSY]
          Length = 830

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 106/350 (30%), Gaps = 21/350 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +I  +++  LYF +    P+  A ++ F   P+ +    +         +   +
Sbjct: 55  RFMIGLVIAALVVAGLYFGRTLLVPLALAFLLSFVLEPLVAQL-KRMGLPRLPSVIAVVM 113

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ +  V  LF+      E +EL +++           R L          +   +   
Sbjct: 114 AMLMVLGVGALFVG----NEARELSAQLPSYQSTIRKKLRSLRQELRAPGMFDGAKRTFD 169

Query: 129 HPQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMIIALF 175
             Q     +   L                                         +++ + 
Sbjct: 170 IVQREVEAAAPALSGATRAPAVQKVQVQPPVLSPANQLMAALSAVSGPLTQAGLVLVFVI 229

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +  +L  L                   I        ++ +  G+ + +  WL
Sbjct: 230 FILLDRVDLRDRLLRLWGGNL-HRATDAMDEAGDRITRYLTMQLLVNVTYGIPMAAGLWL 288

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVD 293
            GVP  V  G + A+M  +P   P    A  + L    +      L+  G I L   + +
Sbjct: 289 IGVPGAVLWGSLAAVMRFVPYLGPFIAAAFPLTLAFAVDPGWDLVLWTLGLIVLLELVSN 348

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + P+L G    L  L             G +GL +   L   + VI +
Sbjct: 349 NVIEPWLYGSSTGLSALSLIVAATFWAALWGPVGLIMSTPLTVCLLVIGR 398


>gi|110634314|ref|YP_674522.1| hypothetical protein Meso_1964 [Mesorhizobium sp. BNC1]
 gi|110285298|gb|ABG63357.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 378

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 114/354 (32%), Gaps = 9/354 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L        +   I+++ LY       P L+ +++ +   PI      +   S    
Sbjct: 14  RRALVRHVSFWLIAAAILILFLYVFSSILLPFLAGMVLAYFLDPIADRLE-RVGLSRLAA 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+   + + L ++ L+ +      ++ +   ++         +   +            
Sbjct: 73  TVLILCAFIILLVIALMVIIPVLGNQLTDFTMRLPDYLTRLQALITNIDPGWFEERIGVN 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    +L      F+ T     + +     G+  ++     +   +  F+   D  
Sbjct: 133 PQSLREGLSTLLTQGAGFVAT-----LFKSIWSSGVALVNLVSLFVVTPVVAFYMLLDWD 187

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  ++DS          ++I+R +         G   I +  G        L G+   +
Sbjct: 188 HMVSKVDSWVPRKQVETVRQIARDINTATAGFVRGQGTICLILGCFYAVGLTLVGLNFGL 247

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +G    +++ IP    +   A+SI +         +    + +      F+    L+P 
Sbjct: 248 LIGFFAGLISFIPFVGSLVGLALSIGVALVQFWPEWYWVLAVAVIFFAGQFVEGNILQPK 307

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG  + L  +   F L       G +GL I     A IAV+ + +I     + 
Sbjct: 308 LVGRSVGLHPVWLMFALYAFGFLFGFVGLLIAVPASAAIAVLVRFAISRYLASP 361


>gi|317121059|ref|YP_004101062.1| hypothetical protein Tmar_0210 [Thermaerobacter marianensis DSM
           12885]
 gi|315591039|gb|ADU50335.1| protein of unknown function UPF0118 [Thermaerobacter marianensis
           DSM 12885]
          Length = 510

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 109/335 (32%), Gaps = 5/335 (1%)

Query: 14  WMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
                +  ++ + L  F      +  A ++ F   P  S         +    ++    V
Sbjct: 54  LAAAGVAWLAWWVLSHFARTLTLLGLAGVLAFLLEPAVSFLERGMRSRALAALLLYLAFV 113

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L +  +         + +EL   V    Q        L      + A          P
Sbjct: 114 ALLALGVVYLAGP-IKEQAQELFWAVPQYRQQVEQAVPLLQTYMEALQAYLSRYGVSLEP 172

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           + L       +  N  + I    +           + + +++   +   DG  +++Q+  
Sbjct: 173 RDLASQFLERVAGN-TNRILAGVTAVVTGVGTTLANALLVLVISIYLVVDGGGLNRQMLG 231

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                +    ++   +  +V      G  ++ +  G+ +G      G+P    LGVI  +
Sbjct: 232 YLPRRYRGPVRRAQAVALRVFGGYLRGQLLLGLIIGVAVGIGMSALGMPYPALLGVIAGV 291

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           M ++P    +     +I + +         + L+  +   +    L P + G  + L  L
Sbjct: 292 MELVPIVGAVLGAIPAILVALFQPWPAVLYVTLFFVVVQQVEGNVLVPRITGQAVGLHPL 351

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            T   L+ G    G+LG  +   ++A +  + +E 
Sbjct: 352 ATLLALLAGYEIAGILGAILAVPVVAFVQALLREF 386


>gi|163792846|ref|ZP_02186822.1| hypothetical protein BAL199_23694 [alpha proteobacterium BAL199]
 gi|159181492|gb|EDP66004.1| hypothetical protein BAL199_23694 [alpha proteobacterium BAL199]
          Length = 369

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 11/348 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   + + ++L+  Y L+    P ++ + + +   P+      +          I  
Sbjct: 5   ERSVFWALFLALLLLGFYVLRDVLVPFVAGMAVAYLLDPVVDRLE-RVRVPRGLATFIVL 63

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L I  LL L      + ++L S +                I      + +     
Sbjct: 64  LGFFALAIGLLLLLIPLLQSQFEKLASTLPGYVDMV--------RIRLAPLLAHVNEGLD 115

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 K+   T    +    +       G    +    ++   I  F+  RD   I   
Sbjct: 116 RQAALQKVTGMTGDLVSWAGGVISRVISGGFAIANLLSLLLITPIVSFYLLRDWDRIVAA 175

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D           +     V + + +   G   + +  G+       +AG+   + +G+ 
Sbjct: 176 VDGWLPREQAPMIRSQVAAVDRTLAAFVRGQGTVCLILGVFYAVGLTVAGLNFGLVIGLF 235

Query: 248 TAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + +++ +P    +      V + L    +      +    A    +    L P LVG  +
Sbjct: 236 SGLISFVPFIGALLGGVLSVGLALAQFDSWQAVAIVAAVFAAGQMLEGNFLTPNLVGEAV 295

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   FGL+ G    G +G+ +   + A+I V+ + ++    ++ 
Sbjct: 296 GLHPVWVIFGLLAGGTLFGFVGVLLAVPVAAVIGVLTRFALAQYLDSP 343


>gi|258625580|ref|ZP_05720466.1| putative lipoprotein [Vibrio mimicus VM603]
 gi|258582133|gb|EEW06996.1| putative lipoprotein [Vibrio mimicus VM603]
          Length = 361

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 142/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++   L   + ++ +   ++ A II    +PI+  F  K      F A
Sbjct: 6   KLASSHRVLVVALLASALACYWLVEPYINSIVMAFIISLLMFPIHEWFEKKLPSHDNFAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
            ++ V +  + ++PLLF+F   + +  +    +     HG I        I  G+  +  
Sbjct: 66  FLSCVVLTVIIVIPLLFIFGAIVQQGSKFSQNLYAWVTHGGIQELFSHPWIVKGLSLANH 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++       + ++   M+  LFF  RD  
Sbjct: 126 YLPFEEISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   ++   +  V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRLLSEIENVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   ++YL + G    A  L +W    +  +   LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATLYLFLTGETTWAIFLAIWSIAVVGSIYNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEEEFRGFLDQQDKS 361


>gi|260463360|ref|ZP_05811561.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259030950|gb|EEW32225.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 402

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 113/349 (32%), Gaps = 9/349 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       + ++ + LY       P ++ +++ +   P+      +   S     V+  
Sbjct: 33  RQIFFWLAGLAVLALFLYVFSDILLPFVAGMVLAYFLDPVADRLQ-RLGLSRFMATVVIL 91

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + + ++  + L      +M +   K+         +                     
Sbjct: 92  ITFLIVLVLAFVILIPVLATQMADFAGKLPEYLTRLQSLITSFDPKWLEEKFGVNANGLR 151

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               SL       + T     +       GM  +      +   +  F+   D   +   
Sbjct: 152 DGLNSLLTSGFGLITT-----VFTSLWSSGMALVSVVSLFVVTPVVAFYMLLDWDRMVAV 206

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS       A  + I+R +         G   + +  G +  +   L G+   + +G+ 
Sbjct: 207 IDSWVPRDNVATVRAIARDINTATAGFVRGQGTLCLVLGAMYATGLTLTGLNFAILIGLF 266

Query: 248 TAIMAMIPGGAPISFTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP    ++   +++ +       +      + +   I  FI    L+P LVG  
Sbjct: 267 AGLISFIPYVGSLTGLVLAVGVAFVQFWPDWTMIVAVAVVFFIGQFIEGNILQPRLVGKS 326

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + L  +   F L       G +GL I     A +AV+ + +I    E+ 
Sbjct: 327 VGLHPVWLMFALFAFGALFGFVGLLIAVPASAAVAVLVRFAIARYLESP 375


>gi|296535339|ref|ZP_06897542.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
 gi|296264338|gb|EFH10760.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
          Length = 357

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 152/332 (45%), Gaps = 3/332 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L+ F + +L A I+ F +WP Y +   +   S    A++     M L  +PLLF
Sbjct: 27  IGCFLVLRPFLSALLWAAILAFCTWPAYRTLRDRLRLSPGLAALLMVTLEMLLVGLPLLF 86

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                  +++ L S V      G+P    LSD  G +     + +       L     T 
Sbjct: 87  ATPIRAEDIEGLRSSVENLIASGLP---GLSDWLGRIPWVGEFLRERWDALQLDFTPLTD 143

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +       I + A    +  L     +I  I+  FFFYRDG  ++  L+ L   +  A  
Sbjct: 144 MLRPYAGVIAQQALGVLLAVLSGLAELILAILLSFFFYRDGPRMAAGLEGLVVRIAGAQA 203

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +++ ++   V      G+   A+ +GL+ G   W++GVP    L VI  I++++P GAP+
Sbjct: 204 RRLVQLTANVTTGVVYGLLGTAVAQGLMTGFGLWISGVPQPALLAVIAGIISVLPVGAPL 263

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   +++L  +G+      L ++GA  +  VD  +RP+L+     LP L T  G +GGV
Sbjct: 264 VWLPAALWLFSQGSTGWGLFLLVYGAGGISSVDNVIRPWLISRGADLPLLLTILGALGGV 323

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              G LGLF+GPVL+A+   + ++      + 
Sbjct: 324 FAFGFLGLFLGPVLLAVGFTLLRDWAEEEPQT 355


>gi|317405134|gb|EFV85477.1| hypothetical protein HMPREF0005_04798 [Achromobacter xylosoxidans
           C54]
          Length = 373

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 154/353 (43%), Positives = 220/353 (62%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   +++    +   
Sbjct: 2   QPVLPAYLIARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVARCGGRTALA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +A + V+ + IVPL     Y + E     +  + AN+HG+ VP W++ +P        
Sbjct: 62  ASLALLVVIVVLIVPLSLALSYAIKEASTFFAWAIAANRHGVDVPNWITSMPVVGDRLSE 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +               +    +  I R             L+++FM+I LFF Y+DG 
Sbjct: 122 YWQAYIGQPHALGALVEAVSGEHLGNIYRMVLAATGNVFQLLLTVLFMLITLFFVYKDGM 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  QLD LGE + PA W++ SR+VP  I ST  GM +IA+GEG+VLG AYW+AGVPS V
Sbjct: 182 RMVAQLDVLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGVVLGIAYWVAGVPSPV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LVG
Sbjct: 242 LLGVVTGFMALIPGGAPLSFTLVSLYLVGSGHVVAGIALMVWGSVELFIVDKTLRPRLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           GP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  +W+E +   +  ++ 
Sbjct: 302 GPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAVWREWVHHEEAERDT 354


>gi|227552502|ref|ZP_03982551.1| permease [Enterococcus faecium TX1330]
 gi|257888263|ref|ZP_05667916.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896848|ref|ZP_05676501.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257899696|ref|ZP_05679349.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293378524|ref|ZP_06624687.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium PC4.1]
 gi|293571451|ref|ZP_06682478.1| transport protein [Enterococcus faecium E980]
 gi|227178352|gb|EEI59324.1| permease [Enterococcus faecium TX1330]
 gi|257824317|gb|EEV51249.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833413|gb|EEV59834.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257837608|gb|EEV62682.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|291608456|gb|EFF37751.1| transport protein [Enterococcus faecium E980]
 gi|292642853|gb|EFF61000.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium PC4.1]
          Length = 388

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 104/331 (31%), Gaps = 5/331 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +      FL     P++ A I+ +   P+   F  + +    +  +   V V+ L +   
Sbjct: 46  LFAPIWQFLAIVGLPIILAGILYYLMNPVVDYFEKR-KVPRLYSIIGLFVLVVALIVWGS 104

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +      +    +S               +   P      E          +      
Sbjct: 105 VVIIPKIQEQTVSFISNFPQYVDTIDNKLTEILRDPLFNQFREQLETAGDKFMNSAGDMI 164

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  + +  +  F      I +        M   LF+  +DG  ++             
Sbjct: 165 QDISKSTVQSLGSFVGAVATILVALLT----MPFILFYLLKDGKRLAPYFVKFLPTRMQK 220

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   +   + S   G   +A    ++    + + G+   V LG+I   + +IP   
Sbjct: 221 PTLNVLSEMNSQVSSYIRGQLTVAFAVAIMFMIGFAIIGLEYAVTLGIIAGFLNLIPYLG 280

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                  +I+L I    F    + +  A+E  I  + + P ++G  + +  +     L+ 
Sbjct: 281 SFLAMIPAIFLAIVAGPFMIIKVLIVFAVEQTIEGRLISPLVLGNQLAIHPVTILLVLLT 340

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             +  G++G+ +G  + A   V+        
Sbjct: 341 SGKLFGIVGVILGIPVYAAAKVVITHVFEWY 371


>gi|54027201|ref|YP_121443.1| hypothetical protein nfa52270 [Nocardia farcinica IFM 10152]
 gi|54018709|dbj|BAD60079.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 390

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 104/335 (31%), Gaps = 13/335 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +    L  L+G    ++ +L + F   P  +   ++          +  + ++ + + 
Sbjct: 27  LVLGFWVLQRLQGLLTVLMISLFLAFAIEPAVNWLAAR-GMRRGPATGLVFLGLVAVVVA 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L    + ++  LV          +                   T+           
Sbjct: 86  FFGALGALLVDQVTTLVQNAPDYADQVVDWIN-----------RTFRTQLSGEDIEKYAT 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             +      +      A   G   +      + +++  F+F  DG      + SL     
Sbjct: 135 EWSDKLEGYLVGFAGNAWGIGTAAVGALFQALGVLLFTFYFAADGPRFRNAVCSLLPPRR 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP 255
             +  +   I  +          ++A+   +   +A  + GVPS +AL +   +++  IP
Sbjct: 195 QVHVLRAWDIAVEKTGGYIYSRGLLALCSAIAHYAALRVLGVPSALALALWVGVVSQFIP 254

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                   A+ I + +  +  +A  L  +  +     +  L+P +    + +     F  
Sbjct: 255 TVGTYLAGAIPIVVALVHDPGSALWLLGFIVLYQQFENYVLQPRITATTLDMHPAVAFGA 314

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++ G   +G  G  +   + A +       +   +
Sbjct: 315 VLAGAALLGATGALLAIPVTATVQAFAGAYVRRYE 349


>gi|226953805|ref|ZP_03824269.1| protein of hypothetical function UPF0118 [Acinetobacter sp. ATCC
           27244]
 gi|294651707|ref|ZP_06729009.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835444|gb|EEH67827.1| protein of hypothetical function UPF0118 [Acinetobacter sp. ATCC
           27244]
 gi|292822426|gb|EFF81327.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 366

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 7/350 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVI 65
            + ++  +   ++ +    LK F  PVL A II + +WP+Y     +       T  A I
Sbjct: 10  QRVLLFGLFFVLMFLGFNILKYFIVPVLWAAIIAYMTWPVYLWVQRRFFGENRPTLNATI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWT 124
               V+ +  VP +F  +   LE + L   +        I VP ++ ++P          
Sbjct: 70  MISLVILVIGVPFIFAIFLLQLEGRNLYMNLQKQLFSGHIQVPDFIRNLPVIGEDISHTI 129

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             LS   +    S      +       +            + + F ++ LFFFYRDG +I
Sbjct: 130 NELSGDPNSITRSIAEWIQSH----LSYGRFVLSEISRNLVKLTFALMTLFFFYRDGQTI 185

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             Q+    E +         + + +  R+   G+ + A+ + L+ G +Y++AGVP+ + L
Sbjct: 186 LAQVSRALEMVIGPRVHHYLQTISETTRAVVYGIGLTAVAQALLAGLSYFVAGVPNPMLL 245

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T I+A+IP G P+S+  V ++L  +G    A  +  WG + +   D  +RP ++ G 
Sbjct: 246 TIVTFILALIPFGTPVSYLGVGLWLFAQGQTVEAIGVVTWGVLIVSSADNVIRPLVISGA 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            ++PFL   FG++GG+ + GL+GLFIGPV++A++  IW+E +    E + 
Sbjct: 306 TQIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLAIWREWLHENVEQQP 355


>gi|262375590|ref|ZP_06068823.1| sporulation integral membrane protein YtvI [Acinetobacter lwoffii
           SH145]
 gi|262309844|gb|EEY90974.1| sporulation integral membrane protein YtvI [Acinetobacter lwoffii
           SH145]
          Length = 406

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 123/348 (35%), Gaps = 6/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    + +IL  LY LK    P ++A +I +   P+ +    +   +      I  +
Sbjct: 7   RRILILAGIALILWVLYLLKPVVVPFVAAFLIAYLFSPLVNVLH-RIGLARWLSISIVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  + + +L      ++      +            +L  +        +      
Sbjct: 66  GIGIVVTLVMWYLVPLVWQQLMYARDSIPAGIHWINYT--FLPWLSDSFNLVPMEIDTDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    +T    + I  +    ++ G+ F+    +I+ + I  F+F  D   +   L
Sbjct: 124 ISSVVMDYVQTNYSADSIQAMLLKLAQSGLNFIQIGGTIVLIPIIAFYFLLDWDRMLDSL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +      I      V+ +   G  ++ +  G+V      L G+   + +G+I 
Sbjct: 184 RRLIPRPYEKTTLNIVSECHSVLGAFVKGQFLVMVLLGVVYAVGLQLIGLEIGLIIGMIA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++         + +    + +   +   +    L+PFL+G  I
Sbjct: 244 GLCSIIPYLGFAVGIIAAVIATFFQFGIDWWQLVLVGIVFMVGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ I   + A+I V+ +      +   
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLRHIREYYEHTP 351


>gi|323466958|gb|ADX70645.1| Permease [Lactobacillus helveticus H10]
          Length = 369

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/343 (16%), Positives = 116/343 (33%), Gaps = 4/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++  +  F      P+L A+I  +   P+   F  K +       ++  + V+   I
Sbjct: 12  ISFVLNPAWVFFSAILPPLLLAVIQYYVMNPVVDWFEKKFKVPRVVTILVLFLFVLIALI 71

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L      ++  L+          +   +     P            + + Q    
Sbjct: 72  WIINILVPIAQNQINSLIKNWPNIWNDAVNATQEALRDPRLHEVKGSLQNMIDNTQKTLF 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S        I  I    S   MI +            LFF  +DG  +   +       
Sbjct: 132 KSGQSTINATIGNISSAVSIITMIVMTLLT----APFILFFMLKDGHQLRPYITKFAPEH 187

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + + + ++   +   + S   G   +A   G++    Y + G+P  +AL ++   M +IP
Sbjct: 188 WQSSFSQLLYDINYALASYIRGQITVAFWVGVMFVVGYMIIGLPYGLALAILAGFMNLIP 247

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                        + I  +      + +   IE  I  + L P ++G  +++  + T   
Sbjct: 248 YFGTPLALIPVFVIAIMTSGSMVIKVLVVFLIEQAIETRILSPLVMGNKMEMHPVTTILL 307

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+G     GL G+F G  + A++ +I        +   E  S 
Sbjct: 308 LIGASSVWGLWGVFFGIPIYAILKIIVSRVYNYYRRESEIFSE 350


>gi|282862278|ref|ZP_06271340.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282562617|gb|EFB68157.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 394

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 97/338 (28%), Gaps = 14/338 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +   + Y L G    ++ A  +     P       +          +  ++V+   +  +
Sbjct: 21  LGSWAFYQLIGLLTNIVIAFFLALAVEPAVGRMADR-GMRRGLATFLVFLAVLIAGVGFV 79

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L      ++  ++          I                + +   LS       L  
Sbjct: 80  VLLGSMLAGQIANMIEDFPKYLDSVINWIN------------QTFHTELSRVGVQDSLLH 127

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           +      +              L     ++ + +  F+F  DG  + + L S+      A
Sbjct: 128 SDWLQRYVQNSATGVLDVSTTVLGGLFRLLTIFLFSFYFAADGPRLRRALCSVLPPARQA 187

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGG 257
              +   I             ++A+  G+          VP   AL V   +++  IP  
Sbjct: 188 EVLRAWEIAVDKTGGYLYSRGLMALISGIAHYVLLVFLDVPYAPALAVWVGLVSQFIPTI 247

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                 A+ + +    + + A  +  +  +     +  L+P L    + +     F  ++
Sbjct: 248 GTYLAGALPMLIAFTVDPWYAVWVLAFVVVYQQFENYVLQPKLTSKTVDIHPAVAFGSVI 307

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G   MG +G  +    +A +       +       + 
Sbjct: 308 AGTALMGAVGALVAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|253577881|ref|ZP_04855153.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850199|gb|EES78157.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 485

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/359 (10%), Positives = 105/359 (29%), Gaps = 19/359 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------------STFL 62
           ++V +    G  AP++  +I+ +   P+ + F  K                         
Sbjct: 36  LIVGIKTFLGIMAPIIYGVILAYILSPLINLFEQKLIYPQLEKHNIKLQKKGKRAIRWGC 95

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWAS 120
            + +      +    L+ +    +  +  ++       +          +          
Sbjct: 96  VLFSMFLFWIIIYALLMMVLPQLIRSIMSIIYSFPYYVKVIEKWLNSFVEHGWKLNPEML 155

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++  ++    Q            + +  +        +   ++ +  I  +  L    + 
Sbjct: 156 DMINQYSVKAQEYLTTDILPQMQDMLKNVSAGIFDILIFMKNFLIGAIVALYVLADKEKF 215

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  + ++  H +     ++ R   K       G  + +   G++      L  +P 
Sbjct: 216 VAKSKMMVYAILPHKWANMLIRVMRFTDKTFGGFIYGKLLDSAIIGILCYFGMLLLDLPY 275

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + VI  +  +IP   P       I L++  +        ++  +        L P +
Sbjct: 276 PILISVIIGMTNVIPFFGPYIGAIPCILLILVVDPIKGLYFAIFILLLQQFDGNILGPKI 335

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G    L        ++ G    G+ G+  G  + A++  +    I     +K+  +  
Sbjct: 336 LGESTGLSSFMVIVAIMIGGGLFGVPGMIAGVPVFAVLYALIWRLINHSLNDKKMPAEE 394


>gi|75676666|ref|YP_319087.1| hypothetical protein Nwi_2482 [Nitrobacter winogradskyi Nb-255]
 gi|74421536|gb|ABA05735.1| Protein of unknown function UPF0118 [Nitrobacter winogradskyi
           Nb-255]
          Length = 662

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 105/359 (29%), Gaps = 27/359 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   +I  +++  LY  +  F P++ A+++ F   P+              + V+  
Sbjct: 8   DRALASAVIAALVICGLYVGREIFVPIVLAVLLSFVLAPLVDILERWHFPRFASVPVVVL 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + +F      L    + E++ L   +    Q      + L  +              
Sbjct: 68  LAFIAIFA-----LGGLIVREVRGLADSLPSYQQTMQQKIQSLRALTATGPLDRAAEILQ 122

Query: 128 SHPQSLKILSETFLKTNGI--------------------DFIPRFASRFGMIFLDYCLSI 167
           +  + +                                        S      L    +I
Sbjct: 123 NLGKEISGPQSPPPPAEISPSSRTAEPVKPIPVEVRTPPQSALENISALISPLLHPLATI 182

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +++ + F       +  +   L                   +    L   ++  G G+
Sbjct: 183 GIVVVFVIFILFQREDLRNRFIKLAGSNDLQSATAAIDDAAGRLSRLLLMQVLLNTGFGV 242

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWG 285
           ++ S   L GVPS +  G++ AIM  +P   P       +++ + +              
Sbjct: 243 IVASGLLLIGVPSAILWGILAAIMRFVPYVGPFIAAFFPLTLAVAVDPGWSMLLWSGALI 302

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   IV +   P LVG    L  +             G +GL +   L   + V+ + 
Sbjct: 303 LLTELIVGQVFDPLLVGHSSGLSPVAVVVSATFWTALWGPIGLVLATPLTICLVVLGRH 361


>gi|121603896|ref|YP_981225.1| hypothetical protein Pnap_0987 [Polaromonas naphthalenivorans CJ2]
 gi|120592865|gb|ABM36304.1| protein of unknown function UPF0118 [Polaromonas naphthalenivorans
           CJ2]
          Length = 394

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/357 (23%), Positives = 149/357 (41%), Gaps = 3/357 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  +          +++ + L   + L  ++  V    I      PI+  F+SK  +  T
Sbjct: 37  MARSSTLEDRSFLLLLVLVSLAFFWVLWPYYGAVFWGAIFALMFSPIFLRFMSKLSQRRT 96

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+     ++ L I+P+  +      E   +  +V   +       + + D     W +
Sbjct: 97  LSALFTVSIILVLVILPVGLISALLTQEAAGVYQRVQSGDLSFGRYFQQIYDALPA-WIT 155

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L  +   +   L     +   T G  FI   A   G    D+ +S   M+  +FFF RD
Sbjct: 156 SLLNRSGLNNLGLIQERVSDSLTKGSQFIATQALNIGQNAFDFFVSFFIMLYLMFFFLRD 215

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G ++S+++      L     + +      VIR+T  G   +A+ +G + G  +W   + +
Sbjct: 216 GAALSRRIKQAIP-LEEDIKRNLFSKFTTVIRATVRGNIAVAVMQGALGGLIFWFLNIHA 274

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G + A ++++P  GA + +  V+IY L  G I+    L  +G + + +VD  LRP 
Sbjct: 275 PVLWGTLMAFLSLLPAVGAALVWIPVAIYFLATGAIWQGVVLIAFGVLVIGLVDNVLRPV 334

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           LVG   K+P        +GG+   GL G  IGPV+ A+    W     A ++   + 
Sbjct: 335 LVGKDTKMPDYVVLVSTIGGMSLFGLNGFVIGPVIAAMFMAAWDIFSKARQDAPVEP 391


>gi|192292736|ref|YP_001993341.1| hypothetical protein Rpal_4370 [Rhodopseudomonas palustris TIE-1]
 gi|192286485|gb|ACF02866.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 652

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 101/353 (28%), Gaps = 28/353 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  II+ +LY  +  F PV  A+++ F      +   S +   +         +   +F
Sbjct: 23  ILAVIIISALYVGREVFVPVALAILLSFVLARPVNFLQSLRVPRAIAAITTVLFAFAVIF 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 L      ++  L   +             L  + GG    E     L +     
Sbjct: 83  A-----LGSLIATQLSRLADDLPQYQSTIQSKITSLRGVTGGSTTLERAEGMLQNLSKEL 137

Query: 135 ILSETFLKTNGID---------------------FIPRFASRFGMIFLDYCLSIIFMIIA 173
              +     +  +                                  +    +   ++I 
Sbjct: 138 NKPKNAPAPSLSNPPTTSSRPVTPVPVEVLQPDPGTLANLRSLIAPLISPLATTGIIVIF 197

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           + F       +  +L  L                   +   FL   +I  G G+++G+  
Sbjct: 198 VIFILLQREDLRNRLIRLAGTRDLQRTTAALDDAASRLSRLFLNQLLINSGFGVLIGTGL 257

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           W+ GVPS    G++ A++  +P    I      +++ + +           +   +    
Sbjct: 258 WIIGVPSPALWGILAAVLRFVPYIGSIISAAFPLTLAVAVDPGWSMLVWTAILFFVIEPA 317

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +   + P + G    L  +             G +GL +   L   + V+ + 
Sbjct: 318 IAHVVEPMVYGRSTGLSPVAVVISATFWTALWGPIGLVLATPLTVCLVVLGRH 370


>gi|239833729|ref|ZP_04682057.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239821792|gb|EEQ93361.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 375

 Score =  143 bits (362), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 138/353 (39%), Gaps = 3/353 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  +++ VL A+I+     P+               A+
Sbjct: 21  MSVQRASFYILLALVTIAFAWLLLPYYSAVLWAVILAVVFSPVQQRLERLLGGRKNIAAL 80

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E  T
Sbjct: 81  LSVLMCICLVIIPMLAIFGSLVQEGNSLYQRLSSREFDLNSYISRILGALPDS-LEEWLT 139

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      +     G          FG   L + +    M+  LFF +RDG  +
Sbjct: 140 RFELGDFAEWRSRISSAIMQGSQLFAGRLVSFGQNTLQFFIGFGIMLYLLFFLFRDGAEL 199

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G + G  +WL GV + +  
Sbjct: 200 GRKIRQAIP-LNDDYTRQFLEKFTAVIRATVKGNIIIAIIQGTIGGVTFWLLGVEAALLW 258

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GV+   ++M+P  GA + +   + +    G   +   L   G   + +VD  LRP LVG 
Sbjct: 259 GVMMTFLSMLPAVGAALVWIPAAAWFFASGEWISGAVLIFVGVFVIGLVDNLLRPPLVGK 318

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             ++P        VGG+  +G+ G  +GP++ A+    W       K N    
Sbjct: 319 GTRMPDYVVLISTVGGISLIGINGFVVGPLIAAMFIAAWSLLAEEQKGNGPAQ 371


>gi|320532667|ref|ZP_08033462.1| hypothetical protein HMPREF9057_01338 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135113|gb|EFW27266.1| hypothetical protein HMPREF9057_01338 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 486

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 106/336 (31%), Gaps = 11/336 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   + + +++ +   +   F  +  AL+      P+ + F             +A ++
Sbjct: 141 GLGIVIAIGLVVYATSQVIPVFIGLFMALVFTSILQPMVNLFAR--IMPRYPATFLALLT 198

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +      + ++      +   L S+        +                 L  + + H
Sbjct: 199 TIGAIAGLVTYVVTSVTSQWSSLASQFGDGLNTIMEFLE--------NGPLHLTQQQIYH 250

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L +        +    +           +D    +   +    FF   G  + +   
Sbjct: 251 QFQLWLRQGQHYLQSNAPSLASELLSNASAVVDVLTVLALALFVTIFFLASGGRMWRWFL 310

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +           + +            G  ++A+ + ++ G    L G+P    L V+  
Sbjct: 311 NELPATMRESTHRAAGAGWYTFAGYARGTVLVALTDAIMAGIFLQLVGIPLAAPLAVLVF 370

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A IP    P++     +  L  G       + +  A    I    L+P ++G  + L 
Sbjct: 371 IGAFIPIIGAPLAMIVAMVVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIMGRQVSLH 430

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    G+  G    GLLG  +   L++++  ++ E
Sbjct: 431 PVVVIIGVALGTYAAGLLGAIVAVPLISVLWSVYSE 466


>gi|237749388|ref|ZP_04579868.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380750|gb|EEO30841.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 367

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/335 (20%), Positives = 139/335 (41%), Gaps = 2/335 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +  + ++ + L     L  F+  +    ++     P+   F+ K        A++     
Sbjct: 10  VFLFFLLIVTLAFFSILLPFYGGIFWGFVLAILFMPLNDFFLRKMPAKKNLAALLTLAIC 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + I+PL+ +    + E   L  K++                        L    +S  
Sbjct: 70  LLIVIIPLIVVAGSLVEESSVLYQKILNQKIDSDASFHHFISQLPDWAVDVLNHFGISTF 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L+  +   +   G  ++       G   LD+ +    M+  LFF  RDG  ++ ++ S
Sbjct: 130 AELQKEATRLILVTG-QYLGSRVFIIGQNVLDFTVGFFVMLYLLFFLLRDGHDLADKIRS 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L      ++      VIR+T  G  ++A+ +G + G  +W  G+ + +  G I ++
Sbjct: 189 KIP-LADNQKTRLLTKFMGVIRATVKGNLVVALVQGGLGGLIFWFLGIEAALLWGAIMSV 247

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++++P G+ + +  V+IY L+ G+I     L  +G + + ++D  LRP LVG   ++P  
Sbjct: 248 LSLLPAGSGVVWAPVAIYFLLTGSILKGVILLAFGILVIGLIDNFLRPLLVGKDTQMPDY 307

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                 +GG+   GL G  IGP++ AL    W   
Sbjct: 308 LVLISTIGGMALFGLNGFIIGPMIAALFLTAWDLF 342


>gi|188583917|ref|YP_001927362.1| hypothetical protein Mpop_4731 [Methylobacterium populi BJ001]
 gi|179347415|gb|ACB82827.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 649

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/366 (12%), Positives = 104/366 (28%), Gaps = 27/366 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +   + 
Sbjct: 11  LRQALPVVTTLASLLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRLRVPRAA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---------- 110
            + ++  ++        L  +      E  +L + +   +         L          
Sbjct: 71  AVLLVVLLAF-----GMLGAVGSLIAREAAQLAADLPRYSLTLRDKITALRAATAERGGL 125

Query: 111 ----------SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                     ++  G                                 + +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTDSDSQLGTAERPMQVEIHAPRSGVLKTLGSVAGGV 185

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           L    ++  +++   F       +  +   L                   +   F+   I
Sbjct: 186 LHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFIAQLI 245

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNA 278
           + +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +      A
Sbjct: 246 LNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVISAVLPLAIAVAVDPGWSMA 305

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +   I   I    + P L G    +  +             G +GL +   L   +
Sbjct: 306 IQVAILFLIVEPIAGHVVEPLLYGHSTGISPVAVILAATLWTFLWGPIGLLLATPLTVCL 365

Query: 339 AVIWKE 344
            V+ + 
Sbjct: 366 VVLGRH 371


>gi|296157947|ref|ZP_06840780.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295891715|gb|EFG71500.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 368

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 162/351 (46%), Gaps = 6/351 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           TM + + +++ +++  ILV  Y  L  F  PV  ALII + +WP+Y    +     +   
Sbjct: 6   TMPDRKRVIQAVLLAAILVLGYVVLWPFVIPVAWALIIAYVTWPLYCRLHALIRGRAWIS 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASE 121
           A++ T+ V  +  +P+  L      E   L   V      G   +P +++ IP    A +
Sbjct: 66  ALLMTLLVGMIAFIPIASLISPVFREFLALYRNVAEYAASGPLRIPDFIARIPWLGHALQ 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +          T      I  +       G   +       F  + LFF YRDG
Sbjct: 126 QLVSEFADDPQRLHAYITQSGDRWIGELASMVGSVGRNAIKL----GFATLTLFFAYRDG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++ +Q+  +   +           +  V RS   G+ + AI +G + G  YW AGV + 
Sbjct: 182 HTLLRQVQRVMRPVLGDRLDGYLSAIGGVTRSVVYGLALTAIVQGALAGLGYWAAGVEAP 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L +IT + A+IP G P  +  V I L+  GN F    L LWGA+ +  VD  +RP ++
Sbjct: 242 LLLTIITTLAALIPFGTPFVWIPVGIGLIANGNTFAGVGLLLWGALVVSWVDNLIRPVVI 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +++PFL   FG++GG+   G +GLF+GPV++A++  +W+E   +  E 
Sbjct: 302 SNAVRVPFLLVLFGVLGGIGAFGFIGLFVGPVVVAILLALWREWCTSEPET 352


>gi|310767844|gb|ADP12794.1| hypothetical protein EJP617_31130 [Erwinia sp. Ejp617]
          Length = 372

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/354 (20%), Positives = 138/354 (38%), Gaps = 4/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G   +++    L  L+ L  +F+ +L A I+     P+ S       + +   +++  +
Sbjct: 8   KGFFIFILAITTLGFLHILGPYFSAILWAAILAIIFHPLKSKIGKYCGDRNGLASMLTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  +PL  +     +E   L +++         V   + +     W      ++  
Sbjct: 68  IICLIVFIPLAVVASSLAVEFNALYNRIQANQTELTTVATSVVNHLP-EWLRHFLAENNL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  F        G     + +    M+  LFF  +DG  +    
Sbjct: 127 TDANAIQQKLSGVAMKGGQFFAGSLMMIGKSTFSFTIGFGIMLYLLFFLLKDGAYLVGMA 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G   +A+ +G + G A+W AG+   +  G + 
Sbjct: 187 LDAIP-LSRFVKHHLFVKFAAVSRATVKGTVAVAVVQGTLGGIAFWCAGIQGSILWGSLM 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +  V I+LL  G +     L  +  + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLIPAVGSAIIWLPVVIWLLFSGAMVKGLALTFFFVVVIGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           P        +GG+   G+ G  IGP++ AL    W        + N ++I S+F
Sbjct: 306 PDYLILISTLGGMEIYGINGFVIGPLIAALFISCWNLLSGRESRGNTDEIDSDF 359


>gi|240143512|ref|ZP_04742113.1| membrane protein [Roseburia intestinalis L1-82]
 gi|257204547|gb|EEV02832.1| membrane protein [Roseburia intestinalis L1-82]
          Length = 442

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 99/336 (29%), Gaps = 17/336 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------------EESSTFLAVIAT 67
               L     P++  ++I +   PI                       + S       + 
Sbjct: 63  FWKKLSLILQPIIIGVVIAYLLNPIMKFLEGHLLKFLEPRMKSKRKAKKTSRGIAITGSL 122

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTK 125
           V ++ + ++ +  +       ++ +++      +        +++          +   K
Sbjct: 123 VFLVGICVLLVAAIVPSISASIQSMITSFPQEAKDLTKWVDEVTNGDTELASMIQQGVDK 182

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                ++             +  I           L+  + +I  +  +           
Sbjct: 183 ITDTVETFFEDDIFSKVQTYLTSITSGVIYGVKFVLNVIVGLIISVYVMADQEHFAGQAK 242

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + ++ + +         R   ++      G  + +   G++      +  +P  V + 
Sbjct: 243 KIVYAMFKPVRANVIVDTVRKSNEIFSGFISGKILDSAIIGVLAYIVLAIMKMPDTVLVA 302

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  +IP   P      S  +++  N        ++  +   I    + P ++G   
Sbjct: 303 VIIGVTNVIPFFGPFIGAVPSFIIIVLQNPIQGLYFLIFIVVLQQIDGNIIGPKILGSST 362

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L      F ++      G  G+ +G  LMA+I  +
Sbjct: 363 GLSAFWVVFAILVFGGLWGFPGMLLGVPLMAVIYYV 398


>gi|239831547|ref|ZP_04679876.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
 gi|239823814|gb|EEQ95382.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301]
          Length = 413

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 93/300 (31%), Gaps = 9/300 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P ++ + + +   P+      +   S     V+  +  +   ++ L+ +      ++ + 
Sbjct: 69  PFVAGMALAYFLDPVADRLE-RLGLSRLAATVVILLIFLMALVLGLMIVVPILATQLADF 127

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +SK+         +              + +    S      + S        +  + + 
Sbjct: 128 ISKIPEYITQLQSLLAN-----EDSQWLKKYIGIDSSVIQQNLSSLLQQGAGFLSTLLQS 182

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
               G   +D     +   +  F+   D   +   +DS          ++I+R +   + 
Sbjct: 183 LWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVSSIDSWVPRRQLHTVRRIAREMNAAVA 242

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL-- 270
               G   + +  G        L G+   + +G    +++ IP        A++I +   
Sbjct: 243 GFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFFAGLISFIPYIGSFVGLALAIGVALV 302

Query: 271 -IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
               +      +     +  F+    L+P LVG  + L  +   F L       G  G+ 
Sbjct: 303 QFWPDWIMICAVAGVFFLGQFVEGNILQPKLVGSSVGLHPVWLMFALFAFGSLFGFTGML 362


>gi|13473951|ref|NP_105519.1| integral membrane transport protein [Mesorhizobium loti MAFF303099]
 gi|14024702|dbj|BAB51305.1| integral membrane transport protein [Mesorhizobium loti MAFF303099]
          Length = 662

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 104/352 (29%), Gaps = 20/352 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +     +   +V+LYF +  F P+  AL++ F   P+ S+   +         + + 
Sbjct: 28  RTALPTVGTIVTAVVALYFGREVFLPIAIALLLTFALAPLVSTL-RRVGIPRIIAVIGSV 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                   +    +      ++  L   +     + +     L    G        ++ +
Sbjct: 87  FGAFAALGLFSFIVA----TQVSVLAQNIPGYQTNILTKIHSLKKTGGEGGIVARLSRVI 142

Query: 128 SHPQSLKILSETFLKTN-------------GIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                     E                     +             +    S   +II +
Sbjct: 143 ERVGQEIDQQEPPAPAADKPQREPVPVEVVARERPLEVLQSLVGTLISPLASAGLIIIVV 202

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F   +   +  +   L  +       +  +   K +    L   ++     + +    W
Sbjct: 203 IFMLLEREELRDRFIRLVGYGDLHRTTQALQDAGKRVGQYLLMQLVVNTVYAIPIAIGLW 262

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IV 292
           + G+P+ +  G++   +  +P   P+    + ++L +      +  L+  G   +   + 
Sbjct: 263 ILGIPNALLWGMLALALRFVPYIGPVIGALLPLFLALAVAPGWSLVLWTAGLFVVMELVT 322

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              + P+L G    L  L      +      G LGL +   L   + V+ + 
Sbjct: 323 GNVVEPWLYGSRTGLSPLAIIVAAIFWTWLWGPLGLVLSTPLTVCLVVLGRH 374


>gi|259506962|ref|ZP_05749862.1| membrane protein [Corynebacterium efficiens YS-314]
 gi|259165414|gb|EEW49968.1| membrane protein [Corynebacterium efficiens YS-314]
          Length = 470

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 99/339 (29%), Gaps = 18/339 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R + + +     + + G       PV+ ALI+             K +      AV   
Sbjct: 42  LRILFIAVAAYVGWLILGQLWRGVLPVILALIVCTVLSTPNMWL-RKLKFPPALAAVTTI 100

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +            +      + + L  +V           +              + + +
Sbjct: 101 IIFFAAIAGVFWLIAPSIARQSQTLYYQVFDGILSVQLWLQGDPFNLDANDVDNFFNEVV 160

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q+                I         +     +++  +++  FFF +DG      
Sbjct: 161 GWLQNQ------------AGTIAGEIFSGLGMATSVIITLGVVLVLTFFFLKDGDRFLSW 208

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                      +  ++       +        I++  + + +G    + GVP   AL VI
Sbjct: 209 GRQAVGETSGWHLTELLTRAWNTLAGFIRAQAIVSAVDAVFIGIGLVIVGVPMAFALSVI 268

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   IP     +      I  L+      A  + +       +    L P L    + 
Sbjct: 269 TFVAGFIPIVGAFTAGALAVIVALVSLGFTEAVIVLIIVVAVQQLEGNILSPILQSKAMN 328

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  +     +  G    G++G F+   + A+IAV ++  
Sbjct: 329 LHPVIVLLSVTVGGTLFGIIGAFLAVPVAAMIAVAFRYF 367


>gi|23013849|ref|ZP_00053702.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 360

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 115/349 (32%), Gaps = 9/349 (2%)

Query: 4   TMLNPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +M + Q +  W+I   + LV LY L+    P ++ + + +   P+      +   S T  
Sbjct: 2   SMSSGQRLRFWLIGGTVFLVLLYLLRSVMLPFVAGMAVAYFLDPLADRME-RAGLSRTLA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I  +    +  + L  L      ++   V KV    +           +P        
Sbjct: 61  TGIICLVFFGIMGLGLTLLAPIIQQQVVTFVHKVPAYAEALQT-----RAMPLLEEVYRH 115

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +          + S           + +     G+  +     +    +  F+  RD  
Sbjct: 116 LSADDLEKLRSSVGSYAGTAVGWGMGVLKGVLSGGIAVMSILSLLFITPVVTFYMLRDWD 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  ++D+          +   R + + I     G   + +   +  G    L G+   +
Sbjct: 176 HMIAKVDTWLPRHHAEVIRFELREIDRTIAGFVRGQATVCMVLAVFYGVGLTLTGLDLGL 235

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC--LFLWGAIELFIVDKTLRPFL 300
            +G+ T + A +P    +     S+ L +           + +   +   +    L P L
Sbjct: 236 MIGLGTGLGAFVPYVGMLIGLIASVGLALAQGGEWHLLGGVGIVFLVGNVLEGNFLTPKL 295

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           VG  + L  +   F L+ G    G +G+ +     ++I V+ + ++   
Sbjct: 296 VGDRVGLHPVWIIFSLLAGGALFGFVGILLAVPAASVIGVLTRFALENY 344


>gi|289433861|ref|YP_003463733.1| hypothetical protein lse_0494 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170105|emb|CBH26645.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 389

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 129/364 (35%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  ++ + ++  +I  ++ + +Y               LK   AP++ A I  +   P+
Sbjct: 9   KQLFIDNKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIVLAGISYYLFNPV 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 K +    +   +  V ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKK-KWKRGWAIALLYVVIIGLIILLFSFVIPAVKDQIISLFKTFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +  + ++S          T +  + I  +         + L    + 
Sbjct: 128 NEFSQSSLFDQLKDKLSTNMSDIMKTLSEKGTSVLNSAITSVGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLVKLVIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILIAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|251810791|ref|ZP_04825264.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805719|gb|EES58376.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|329735852|gb|EGG72131.1| putative membrane protein [Staphylococcus epidermidis VCU028]
          Length = 405

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 124/354 (35%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
            ++  +++ I++       Y  + F         P++ +L++ +   PI +     +   
Sbjct: 34  ALIALVLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYR-IP 92

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  V+++ +  + +  L      +++  +                L++      
Sbjct: 93  RLLGITIIYVAIIGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNN----NT 148

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++            + ++  D      + F     +  + I      LFF  
Sbjct: 149 ILSGYMGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFFML 208

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    F   +  +   +   + S   G  I++   GL+L   Y + G+
Sbjct: 209 KDGHKFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSIIGL 268

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P
Sbjct: 269 KYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFISP 328

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  K  
Sbjct: 329 NVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRR 382


>gi|260909414|ref|ZP_05916122.1| membrane protein [Prevotella sp. oral taxon 472 str. F0295]
 gi|260636506|gb|EEX54488.1| membrane protein [Prevotella sp. oral taxon 472 str. F0295]
          Length = 371

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 44/366 (12%), Positives = 117/366 (31%), Gaps = 17/366 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW I  ++++++YF    +     P   A ++ +  +P+         
Sbjct: 1   MLEEKITLDKLVRWTISGLLILAVYFVTNSMSEVLLPFFIACLLAYLLYPLVKFTEKYLH 60

Query: 57  ES-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   +   + +  L     L +    + +  ++            P     S I  
Sbjct: 61  IRIRALSILFVVLVLAGLLTGIGLLIVPSMIEQFDKISELAARYLGSSTPASDLSSYIQN 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +   +         +       T +                   +   ++    ++ +F
Sbjct: 121 WLREHQEDIDRFVRSKDFNETLRTTMPKLF------NLLGQTASVVVSIVASCITLLYMF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   +++    +       +W ++++   + + +   G  ++++  G++    + +
Sbjct: 175 FILLDYEFLTENWVRIFPKKHRPFWNELAQDASRELNNYIRGQGLVSLIMGIMFCIGFTI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIEL 289
              P  + LG++  +M ++P     +    +   L       +          L   +  
Sbjct: 235 IDFPMAIGLGILIGVMNLVPYLHTFALIPTAFLALLKAGDTGQNFWVIFGMAILVFIVVQ 294

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I D  + P ++G  + L        L      +G +GL I   L  LI   W+  +   
Sbjct: 295 IISDMVVTPRVMGKAMGLNPAIILLSLSVWGSLLGFIGLIIALPLTTLIMAYWQRYVTKE 354

Query: 350 KENKEK 355
           + + E 
Sbjct: 355 EVDDEP 360


>gi|238854901|ref|ZP_04645231.1| transport protein [Lactobacillus jensenii 269-3]
 gi|282931613|ref|ZP_06337106.1| permease [Lactobacillus jensenii 208-1]
 gi|238832691|gb|EEQ24998.1| transport protein [Lactobacillus jensenii 269-3]
 gi|281304224|gb|EFA96333.1| permease [Lactobacillus jensenii 208-1]
          Length = 401

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 106/302 (35%), Gaps = 4/302 (1%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   PI   F  K +   T   ++  + V+   I  +  L      ++  L+       
Sbjct: 67  YYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALIWIINSLLPIIQNQVDALIKNWPNIW 126

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
              +   + L   P            +   +     S     T  +  I    S   MIF
Sbjct: 127 DTSVKTIQNLLHDPHLKGVKSNINSVIDSIEKTLFKSWQDTGTAALTNISSAVSVITMIF 186

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +            LF+  +DG  ++  L       +   + ++   + + I +   G   
Sbjct: 187 MTLLT----APFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQIT 242

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +A+  G++    Y + G+P   AL V+ A M +IP           + +    +      
Sbjct: 243 VAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGMLIN 302

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +  AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + A++ +
Sbjct: 303 VLIVFAIEQTIETRFISPIIVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIYAVVKI 362

Query: 341 IW 342
           + 
Sbjct: 363 VV 364


>gi|115360276|ref|YP_777414.1| hypothetical protein Bamb_5533 [Burkholderia ambifaria AMMD]
 gi|115285564|gb|ABI91080.1| protein of unknown function UPF0118 [Burkholderia ambifaria AMMD]
          Length = 355

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 141/357 (39%), Gaps = 7/357 (1%)

Query: 1   MRETMLNP----QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           MRE  ++     Q    +++  + +   + L  F   V    I+     P+     ++  
Sbjct: 1   MREPSMDSGHDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFG 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
           +     A+++   ++ + I+PL+F+    + E+  +  ++  A  +       +      
Sbjct: 61  KRRNLAALVSMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSRYFHDIIHALPT 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              + L    LS+   ++             F    A   G     + +S   M+  LFF
Sbjct: 121 SIQNLLQKYGLSNIPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMLFF 179

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             RDG  I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ 
Sbjct: 180 LLRDGGEIGRRVRRSIP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWIL 238

Query: 237 GVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+   V  G + A ++++P     + +   ++Y L  G I+    L  +    + +VD  
Sbjct: 239 GIEGVVLWGALMAFLSLLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNL 298

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 299 LRPILVGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 355


>gi|69245324|ref|ZP_00603368.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257880028|ref|ZP_05659681.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257882264|ref|ZP_05661917.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257885461|ref|ZP_05665114.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257891119|ref|ZP_05670772.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257893933|ref|ZP_05673586.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614642|ref|ZP_05712412.1| hypothetical protein EfaeD_02925 [Enterococcus faecium DO]
 gi|260560358|ref|ZP_05832534.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|261208296|ref|ZP_05922969.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289565616|ref|ZP_06446062.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293553298|ref|ZP_06673934.1| transport protein [Enterococcus faecium E1039]
 gi|293563029|ref|ZP_06677495.1| transport protein [Enterococcus faecium E1162]
 gi|293567678|ref|ZP_06679021.1| transport protein [Enterococcus faecium E1071]
 gi|294614303|ref|ZP_06694221.1| transport protein [Enterococcus faecium E1636]
 gi|294619152|ref|ZP_06698640.1| transport protein [Enterococcus faecium E1679]
 gi|294623073|ref|ZP_06701959.1| transport protein [Enterococcus faecium U0317]
 gi|314938320|ref|ZP_07845612.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a04]
 gi|314941803|ref|ZP_07848679.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133C]
 gi|314948645|ref|ZP_07852019.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0082]
 gi|314952572|ref|ZP_07855568.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133A]
 gi|314992262|ref|ZP_07857698.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133B]
 gi|314997473|ref|ZP_07862420.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a01]
 gi|68195854|gb|EAN10289.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257814256|gb|EEV43014.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257817922|gb|EEV45250.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257821317|gb|EEV48447.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257827479|gb|EEV54105.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830312|gb|EEV56919.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073703|gb|EEW62029.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|260077553|gb|EEW65271.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289162584|gb|EFD10438.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291589613|gb|EFF21418.1| transport protein [Enterococcus faecium E1071]
 gi|291592857|gb|EFF24448.1| transport protein [Enterococcus faecium E1636]
 gi|291594577|gb|EFF25966.1| transport protein [Enterococcus faecium E1679]
 gi|291597442|gb|EFF28607.1| transport protein [Enterococcus faecium U0317]
 gi|291602522|gb|EFF32738.1| transport protein [Enterococcus faecium E1039]
 gi|291604943|gb|EFF34411.1| transport protein [Enterococcus faecium E1162]
 gi|313588482|gb|EFR67327.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a01]
 gi|313593167|gb|EFR72012.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133B]
 gi|313595341|gb|EFR74186.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133A]
 gi|313599419|gb|EFR78262.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133C]
 gi|313642318|gb|EFS06898.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0133a04]
 gi|313644898|gb|EFS09478.1| putative sporulation integral membrane protein YtvI [Enterococcus
           faecium TX0082]
          Length = 388

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 103/331 (31%), Gaps = 5/331 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +      FL     P++ A I+ +   P+   F  + +    +  +   V V+ L     
Sbjct: 46  LFAPIWQFLAIVGLPIILAGILYYLMNPVVDYFEKR-KVPRLYSIIGLFVLVVALIAWGS 104

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +      +    +S               +   P      E          +      
Sbjct: 105 VVIIPKIQEQTVSFISNFPQYVDTIDNKLTEILRDPLFNQFREQLETAGDKFMNSAGDMI 164

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  + +  +  F      I +        M   LF+  +DG  ++             
Sbjct: 165 QDISKSTVQSLGSFVGAVATILVALLT----MPFILFYLLKDGKQLAPYFVKFLPTRMQK 220

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   +   + S   G   +A    ++    + + G+   V LG+I   + +IP   
Sbjct: 221 PTLNVLSEMNSQVSSYIRGQLTVAFAVAIMFMIGFAVIGLEYAVTLGIIAGFLNLIPYLG 280

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                  +I+L I    F    + +  A+E  I  + + P ++G  + +  +     L+ 
Sbjct: 281 SFLAMIPAIFLAIVAGPFMIIKVLIVFAVEQTIEGRLISPLVLGNQLAIHPVTILLVLLT 340

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             +  G++G+ +G  + A   V+        
Sbjct: 341 SGKLFGIIGVILGIPVYAAAKVVITHVFEWY 371


>gi|315646978|ref|ZP_07900092.1| hypothetical protein PVOR_16529 [Paenibacillus vortex V453]
 gi|315277630|gb|EFU40955.1| hypothetical protein PVOR_16529 [Paenibacillus vortex V453]
          Length = 383

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 121/337 (35%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++      +K    P++ + I+ +   P+      +      +  +I  +++  +  
Sbjct: 40  ISFVLHPLAVLIKTIVLPIILSGILYYLLNPLVDIMEKR-NIKRGWSILILYLAIAGILT 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +L +      ++  L+      +++       L+         +  + +     +   
Sbjct: 99  VVVLAVIPVLRNQITGLIDNFPRYSENVRLQFEELTGSQLFSQLQDAVSINSQDWWNTLT 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T +  +    +  F   F  I L        +   LF+  +DG  + Q++ S     
Sbjct: 159 QKATEIFNHTWARVGGFLGAFTEIVLSIVT----VPFVLFYMLKDGKKLPQKILSFLPTK 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +    + + +   I S   G  I++   G++L   Y + G+   + L +I +  +++P
Sbjct: 215 SRSGIFHVLQDINHQISSFIRGQIIVSFCIGILLYIGYMIIGLDYALILAIIASFTSIVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++ + +  +      +     I   I  K + P ++G  +K+  +   F 
Sbjct: 275 YLGPAIAITPALIVALVTSPVMLLKMVAVWTIVQLIEGKFISPQIMGKTLKIHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++      G++G+ +     A++ V         K+ 
Sbjct: 335 ILTSGNLFGVVGILLAVPGYAVLKVCATHIFKWFKDT 371


>gi|317495386|ref|ZP_07953755.1| hypothetical protein HMPREF0432_00357 [Gemella moribillum M424]
 gi|316914445|gb|EFV35922.1| hypothetical protein HMPREF0432_00357 [Gemella moribillum M424]
          Length = 381

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 127/330 (38%), Gaps = 11/330 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P++ A I  +   P+ + F  K        +++A V  + + +V ++ +    
Sbjct: 60  IVSSIMTPIIVAYIFYYILNPLVNFFSKKM--PRFLASLLAIVVGVIVILVVIIGMVPIV 117

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + + K L++ +    +         SD        E    +L+          + L +  
Sbjct: 118 VEQTKNLITSLPRYIEIVKGYLDTYSDNAYVQVVIEYINNNLNI---------SQLSSKA 168

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           ++     A             +I M   LFF  +D  + ++   S+          +   
Sbjct: 169 VEVATLVAQNIASSLSSTASVLITMPFVLFFLLKDATTFNKYFISILPKKLEKPVAETIE 228

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  ++++  G++L   Y + G+    +L  I A ++++P   P+     
Sbjct: 229 EIDDKVGSYIQGQMLVSLCIGVMLFIGYNIIGLHYAFSLATIAAFLSIVPYLGPVIAITP 288

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    +      + +   I  F+    + P ++G  +K+  L   F ++ GV   G+
Sbjct: 289 AMLVAASTSWVMVIKMLVVWGIVQFLEGNIISPNIMGRSMKMHPLTVIFVILIGVNMAGV 348

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  +G  + +++ V+  + + ++K   +K
Sbjct: 349 VGAILGIPVYSILKVLIVKLLTSLKNRYDK 378


>gi|311693484|gb|ADP96357.1| protein belonging to uncharacterized protein family UPF0118 [marine
           bacterium HP15]
          Length = 371

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/353 (22%), Positives = 147/353 (41%), Gaps = 5/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                  +++ + L  ++ +K FF P+  A+ I     P+      K  +     A+I  
Sbjct: 6   ETRTFLALLVGVSLAFVFLMKPFFGPIFWAVAIALIFHPVQQLLERKLGDRPNVNALITL 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              M + ++P+L L    + E   L  ++       I    ++  +     A + +    
Sbjct: 66  CICMFIVVIPVLVLVTSLVAEGVALYQQIQSGE---IRPGEYIDRVNQSFPAIQAFLAQF 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +        +   G  F+ R A   G     + L +  M+   FF  RDG ++ + 
Sbjct: 123 DISFAELRDRAVSIFVGGSQFLGRQALGVGQNTFQFFLGLALMVYLAFFLLRDGRALVEL 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +     +V R+T  G  +IAI +G + G  +W+ G+   +  GV+
Sbjct: 183 MIRALP-LGDERERLLFAKFAEVTRATVKGNLLIAIIQGALGGLIFWILGISGALLWGVV 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            AI++++P  GA + +   +IYL   G++  A  L  +G + + + D  LRP LVG   K
Sbjct: 242 MAIVSLLPAVGAALVWVPAAIYLAAVGDVVEAVVLTAFGVVVIGLADNLLRPVLVGRDTK 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LP        +GG+   G+ G  +GP++ AL    W   I    E   + +++
Sbjct: 302 LPDYIVLLSTLGGIVMFGINGFVMGPLVAALFMAFWGIFIREFSEEAHRPAAS 354


>gi|304309717|ref|YP_003809315.1| Predicted permease PerM family [gamma proteobacterium HdN1]
 gi|301795450|emb|CBL43648.1| Predicted permease PerM family [gamma proteobacterium HdN1]
          Length = 414

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 140/359 (38%), Gaps = 5/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       +     +++ +    ++ LK FF  +  A+ I     P+      +    ++
Sbjct: 1   MYYRERLERRTFLLLLLIVSFSFMWLLKPFFGAIFWAVAIALIFSPVQRRLNQRWPSRNS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  +  + + ++P+LF+    + E   L  ++            +L+ +       
Sbjct: 61  GNAMLTLLLCVVVLVLPMLFVVGSLVSEGAGLYQRINAGQ---FDPAHYLARLREAFPMV 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   +  +            L   G   +       G       L+ +  +   FFF RD
Sbjct: 118 EELFRRANIDMQSLQEKLAELGMAGSKLLAGQVVALGQNTFSVVLNAVLALYVGFFFLRD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++ QL      L  A  + +      V+R+T  G  ++A+ +G + G A+   G+  
Sbjct: 178 GEQLTVQLIRALP-LGDARERLLLDRFAGVMRATIKGTLVVALVQGALGGLAFAALGISG 236

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G +  I ++IP  GA + +  V++Y L  G+  +   L + G   + +VD  LRP 
Sbjct: 237 ALLWGGVMVIASLIPAVGAALIWAPVAVYSLATGDWVSGVVLIVVGVGVIGMVDNLLRPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LVG   ++P        +GG+   G+ GL IGP++ AL    W+  +            
Sbjct: 297 LVGRDTQMPDYLVLLSTLGGLALFGMNGLIIGPIIAALFIAFWEIFMREFNAPDATAPE 355


>gi|58038598|ref|YP_190562.1| putative permease [Gluconobacter oxydans 621H]
 gi|58001012|gb|AAW59906.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 374

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 4/342 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +    ++ +F + + LY LKGF   +L   +   + WP+Y     +   S     ++
Sbjct: 23  TIQRRARGFLALFFVAIGLYTLKGFLPALLWGCVFAISIWPLYRRTELRFGRSDWLP-MV 81

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T++V  +F+VP+  +      E +  +  +     +GIP+P W+  +P     +  W +
Sbjct: 82  FTLAVALIFLVPVSLVGVKVADEARSALEWIDDVRNNGIPMPEWVPHLPFLSAQATNWWQ 141

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +              L +  +    +   + G           F ++ LFF  +DG S+ 
Sbjct: 142 NHMTSPQRLSHL---LHSVDVGHGMQMTKQVGSQLARRGTLFAFSLLTLFFLLKDGDSVI 198

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++     + LF    + +++ +   +  T  G+ ++ +GEG ++G  Y   G P  +   
Sbjct: 199 RKCLLGSQRLFGEQGESLAKQMISSVHGTLAGLVLVGLGEGAIMGIVYMATGAPQPLLFA 258

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++TA+ AMIP  A  +   V++ LL K ++  A  +   G++ +FI D  +RP L+GG  
Sbjct: 259 MVTAVAAMIPFLAWPTVGLVALLLLAKSSMIGAIVVSAVGSVVIFIADHFIRPALIGGST 318

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           K+PFL    G++GG  T GLLGLF+GP +MA + ++W     
Sbjct: 319 KMPFLWVLLGILGGAETWGLLGLFLGPAIMAALHLLWTLWTE 360


>gi|308185989|ref|YP_003930120.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
 gi|308056499|gb|ADO08671.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
          Length = 412

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/335 (20%), Positives = 128/335 (38%), Gaps = 3/335 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G    ++    +     L  +F+P+L A I+     P+ +   S+  + +   A+I    
Sbjct: 9   GFFILILAIATVAFFEVLSPYFSPILWAAILAVIFHPLKTWLRSRLGDRNGVAALITLFC 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +   PL  +    ++E   +  K+   +     V   L       WA     ++   
Sbjct: 69  ICLIVFTPLAIIASSLVVETNAVYHKLQTNSSQFPAVFADLLQHLP-RWAKHFLAENNLD 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                    +     G  ++   A   G     + +    M+  LFF  +DG  +   + 
Sbjct: 128 NAEQIQQKLSSFALKGGQYVAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGSYLVHLIL 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L       +      V R+T  G  ++ I +G++ G A+W  G+   +  G + A
Sbjct: 188 EALP-LSTYVKHHLMVKFAAVARATVKGTVVVGIVQGILGGLAFWFTGIDGSLLWGALMA 246

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +++IP     I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P
Sbjct: 247 FLSLIPAVGSAIIWVPAAIFFFATGALWKGLFLVGFFVVIVGLVDNILRPLLVGKDTKMP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                   +GG+   G+ G  IGPV+ AL    W 
Sbjct: 307 DYMILIATLGGMEIYGINGFVIGPVIAALFIACWN 341


>gi|290580177|ref|YP_003484569.1| hypothetical protein SmuNN2025_0651 [Streptococcus mutans NN2025]
 gi|254997076|dbj|BAH87677.1| putative membrane protein [Streptococcus mutans NN2025]
          Length = 389

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 105/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L FL     P++ + ++ +   PI      +   S      I  V +  L +  +   F
Sbjct: 49  LLSFLAVIMLPLVISALLYYLLKPIVDFIERR-GTSRVMAITIVFVIIAGLLVWGIANFF 107

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++   +  +    +        L                +++     +       
Sbjct: 108 PMLNEQLTSFIKYLPSYVRSVDAQVSKLLRNDLLASFRPQIEDAVTNFSQKAVDYAETFS 167

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              + +   FAS    + +   +S   +     +  RD   + +   S           +
Sbjct: 168 KGAVTWAGNFASLIARVTVAIIISPFIVF----YLLRDSSKMQEAFVSYLPTKMRQPIHR 223

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   V + +     G   +AI  G +    + + G+   V  G+I   + MIP       
Sbjct: 224 ILGDVNRQLAGYVQGQVTVAIIVGFMFSIMFTIIGLRYAVTFGIIAGFLNMIPYLGSFLA 283

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T     L +         + L   +E  I  + + P ++G  + +  +   F L+     
Sbjct: 284 TIPVFILALVEGPVMVVKVALVFIVEQTIEGRFVSPLVLGSKLSIHPITIMFILLTAGSM 343

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G+ G+F+G  + A I V+ KE     K
Sbjct: 344 FGVWGVFLGIPVYASIKVVVKEIFEWYK 371


>gi|39936906|ref|NP_949182.1| membrane transporter [Rhodopseudomonas palustris CGA009]
 gi|39650763|emb|CAE29286.1| possible membrane transport protein [Rhodopseudomonas palustris
           CGA009]
          Length = 652

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 101/353 (28%), Gaps = 28/353 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  II+ +LY  +  F PV  A+++ F      +   S +   +         +   +F
Sbjct: 23  ILAVIIISALYVGREVFVPVALAILLSFVLARPVNFLQSLRVPRAIAAISTVLFAFAVIF 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 L      ++  L   +             L  + GG    E     L +     
Sbjct: 83  A-----LGSLIATQLSRLADDLPQYQSTIQSKITSLRGVTGGSTTLERAEGMLQNLSKEL 137

Query: 135 ILSETFLKTNGIDFIPRF---------------------ASRFGMIFLDYCLSIIFMIIA 173
              +     +  +                                  +    +   ++I 
Sbjct: 138 NKPKNAPAPSLSNPPTSSSRPVTPVPVEVLQPDPGTLANLRSLIAPLISPLATTGIIVIF 197

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           + F       +  +L  L                   +   FL   +I  G G+++G+  
Sbjct: 198 VIFILLQREDLRNRLIRLAGTRDLQRTTAALDDAASRLSRLFLNQLLINSGFGVLIGTGL 257

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           W+ GVPS    G++ A++  +P    I      +++ + +           +   +    
Sbjct: 258 WIIGVPSPALWGILAAVLRFVPYIGSIISAAFPLTLAVAVDPGWSMLVWTAILFFVIEPA 317

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +   + P + G    L  +             G +GL +   L   + V+ + 
Sbjct: 318 IAHVVEPMVYGRSTGLSPVAVVISATFWTALWGPIGLVLATPLTVCLVVLGRH 370


>gi|330428410|gb|AEC19744.1| membrane protein [Pusillimonas sp. T7-7]
          Length = 361

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 162/347 (46%), Positives = 213/347 (61%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I RW+++ +ILV LYFL GF  PVL+ALII   SWP+Y   + +    +   A +A + V
Sbjct: 10  IARWLLVLLILVGLYFLSGFLVPVLAALIISLASWPLYQRLLRRCHGRNALAASLALIIV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + IVPL     Y + E    ++  + AN+HG+PVP W+  +P        +       
Sbjct: 70  IIVLIVPLSLALSYAVQEASNFIAWALAANRHGMPVPAWILALPLVGARLAEYWTTYLGE 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     +    +  I R             L +IFM+I LFF Y+DG  I  QLD 
Sbjct: 130 PHALGEMVEIVSGEHLGNIYRMLLSATGDVFRLLLGVIFMLITLFFVYKDGAHILGQLDI 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +G+ + P  W++ SR+VP  I ST  GM +IA+GEG+VLG AYW+AGVPS V LGVIT  
Sbjct: 190 VGDRILPGRWRRFSRVVPATINSTVTGMGLIALGEGVVLGLAYWIAGVPSPVLLGVITGF 249

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           MA+IPGGAP+SF+ VS+YL+  G       LFLWG +ELFIVDKTLRP LVGGP+KLPFL
Sbjct: 250 MALIPGGAPLSFSVVSLYLVGSGEPMAGLGLFLWGTVELFIVDKTLRPRLVGGPVKLPFL 309

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           PTFFGL+GGV+TMGL+GLF+GPVLMAL+  IW+E I        K+S
Sbjct: 310 PTFFGLIGGVQTMGLVGLFVGPVLMALLVAIWREWIHEDDNKIAKLS 356


>gi|264678266|ref|YP_003278173.1| hypothetical membrane protein [Comamonas testosteroni CNB-2]
 gi|262208779|gb|ACY32877.1| hypothetical membrane protein [Comamonas testosteroni CNB-2]
          Length = 368

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 132/335 (39%), Gaps = 3/335 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ +   +   ++      P++   + +     T  A+   +  + + I+PL  +    
Sbjct: 2   VLEEYAVAIFWGVVFAIVFAPLHRKLLMRMPNKPTLAALATLLISLVMVILPLSLIGLSL 61

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   +  ++   N         + +     W +    K             + +    
Sbjct: 62  IKETAAIYDRISSGNLSAGSYVEQVFNALPS-WLTPWMEKLHLGTLEEIQTKLSNIALQA 120

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                  A   G   L + +    M+  +FF  RDG  +  ++ +    L P + ++++ 
Sbjct: 121 SKLAATKAVGLGQNTLGFVVGFGVMLYLIFFLLRDGKELVARIWAATP-LAPEHKRELAI 179

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
               VIR+T  G   +A  +G + G  +WL G+   V   V+ A ++++P     + +  
Sbjct: 180 KFITVIRATVKGNLAVAAAQGALGGLIFWLLGIQGAVLWAVVMAFLSLLPAVGAGLVWGP 239

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+IY L  G +     L  +G + + +VD  LRP LVG   K+P        +GG+   G
Sbjct: 240 VAIYFLATGAVTKGLILAAYGVLVIGLVDNVLRPLLVGKDTKMPDYVVLISTLGGMALFG 299

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L G  +GP + AL    W+      ++ ++ ++  
Sbjct: 300 LSGFVLGPAIAALFMAAWELFATMQEQEEKLLNRE 334


>gi|325568437|ref|ZP_08144804.1| permease [Enterococcus casseliflavus ATCC 12755]
 gi|325158206|gb|EGC70359.1| permease [Enterococcus casseliflavus ATCC 12755]
          Length = 393

 Score =  143 bits (360), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 98/327 (29%), Gaps = 5/327 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              FL     P++ A I+ +   P       K      +      V V+ L +  ++ + 
Sbjct: 48  VWQFLAIVGLPIILAGILYYLMNPTVDYLERK-GIKRIYSIFGLFVLVVGLIVWGVVVII 106

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +       +             +   P      +          S        L 
Sbjct: 107 PKIQEQSMSFADNLPGYLTIIENKVNEILSDPIFSQVQDQIEASNEKLISSLTDIVQNLS 166

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + I  +  F      I L        M   LF+  +DG  ++                 
Sbjct: 167 RSTIQNLGSFFGAVATIVLAVIT----MPFILFYLLKDGRKLAPYFVKFLPTKMRQPSLI 222

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   + S   G   +A    ++    + + G+   + LG+    + +IP       
Sbjct: 223 VLKEMNDQVSSYIRGQLTVAFAVAVMFMIGFSIIGLDYAITLGIAAGFLNLIPYLGSFLA 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I G       + +   IE  I  + + P ++G  + +  +     L+   + 
Sbjct: 283 MIPAVFLGIVGGPVLLIQVLIVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKL 342

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            GL+G+ +G  + A   VI        
Sbjct: 343 FGLVGVILGIPVYAAAKVIITHVFEWY 369


>gi|85715997|ref|ZP_01046974.1| hypothetical protein NB311A_14310 [Nitrobacter sp. Nb-311A]
 gi|85697195|gb|EAQ35076.1| hypothetical protein NB311A_14310 [Nitrobacter sp. Nb-311A]
          Length = 683

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 110/362 (30%), Gaps = 28/362 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +   ++  +++  LY  +  F P++ A+++ F   P+           +  + V+
Sbjct: 18  IGDRALTAVVVAALVICGLYVGREIFVPIVLAVLLSFVLAPLVDILERWHFPRAASVPVV 77

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + +F      L    + E++ L   + L  Q      + L  +            
Sbjct: 78  VLLAFIAIFA-----LGGLIVREVRGLAESLPLYQQTMQQKIQSLRALTMTGPLDRAAEL 132

Query: 126 HLSHPQSLKILSET---------------------FLKTNGIDFIPRFASRFGMIFLDYC 164
             +  + +                            L  +         S      L   
Sbjct: 133 LQNLDKEISGPQNQPSPSAAGSPSSKTADHVEPIPVLVRSPPQSALENISALISPLLHPL 192

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
             +  +I+ + F       +  +   L                   +   FL   ++  G
Sbjct: 193 AIVGIVIVFVIFILFQREDLRNRFIKLAGSNDLQSATAAIDDAAGRLSRLFLMQVLLNAG 252

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLF 282
            G+++ +   L GVPS +  G++ AIM  +P   P       +++ + +           
Sbjct: 253 FGVIVAAGLLLIGVPSAILWGILAAIMRFVPYVGPFIAAFFPLTLAIAVDPGWSMLLWSG 312

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +   +V +   P LVG    L  +             G +GL +   L   + V+ 
Sbjct: 313 ALILLTELVVGQVFDPLLVGHSSGLSPVAVVVSATFWTALWGPIGLVLATPLTICLVVLG 372

Query: 343 KE 344
           + 
Sbjct: 373 RH 374


>gi|149190146|ref|ZP_01868422.1| predicted permease [Vibrio shilonii AK1]
 gi|148836035|gb|EDL52996.1| predicted permease [Vibrio shilonii AK1]
          Length = 357

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 139/351 (39%), Gaps = 2/351 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++F        ++ +   ++ A I+    +PI+    SK  +    +A+++ + 
Sbjct: 8   WVLILALLFAAFACYLLVEPYMNSIVMAFILSLLMFPIHEWIESKMPKHKNVVALLSCIV 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLS 128
           +  + ++PLL +F   + +       +      G I        +  G+     +    +
Sbjct: 68  LTFIIVMPLLLVFSAIVQQGSVFSQNMYQWVTGGGIQEVIAHPWVKKGLSFINDYLPFDA 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         T+    +   +++      ++ ++   M+  LFF  RD   I   +
Sbjct: 128 INAQDIAQKAAEFATSLGSNLVATSAKILGDATNFLMNFFLMLFVLFFLLRDHDKIIAAI 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +      +   ++   + KV +S  +G  + AI +G   G   W+AG P      ++ 
Sbjct: 188 RHILPFS-RSQEDRLLNEIEKVSKSAVMGSFLTAIAQGAAGGFGMWMAGFPGLFWGTMMG 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               +   G  + +   + YLLI G+      L +W    +  +D  LRP L+ G   + 
Sbjct: 247 FASFIPVVGTALIWIPATAYLLITGDTTWGLFLAVWSIAVVGSIDNVLRPLLMQGSAGMN 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L  FF L+GG+   GL+GL  GP++ A+  V++       K+  +   ++
Sbjct: 307 TLMIFFSLLGGIHLFGLIGLIYGPLIFAITMVLFNMYEEEFKDFLDGQDNS 357


>gi|92114233|ref|YP_574161.1| hypothetical protein Csal_2111 [Chromohalobacter salexigens DSM
           3043]
 gi|91797323|gb|ABE59462.1| protein of unknown function UPF0118 [Chromohalobacter salexigens
           DSM 3043]
          Length = 363

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 117/350 (33%), Gaps = 8/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +        +    ++  L  L+    P    +I+ +   P+     ++   S      +
Sbjct: 1   MTRIQWWGLLGAAGLVWLLVLLEPILMPFFVGMILAYLGDPVTDWLEAR-GLSRRLSVSV 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +    ++  L L      ++ +L                    +P     + +   
Sbjct: 60  VFLVLALNIVLACLVLIPLLGRQLAQLAESFPAIFNWVQTTV-----LPEVQSLTGVDLS 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    ++            +   AS+ GM    +  ++  + +  F+F  D   + 
Sbjct: 115 ADFDQLRSTLMDNWRETGTVAAAVLAQASKSGMAVAVWLGNLALIPVTTFYFLLDWDRLK 174

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L  L          ++ R   +V+ +   G  ++ +   ++      L G+   + +G
Sbjct: 175 ARLRDLMPRHVEPTITRLGRECDEVLSAFLRGQLLVMLSLAVIYAVGLSLLGLRFGLLIG 234

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++  + +++P    I   +++  +     G       + L   +   +    L+P L+G 
Sbjct: 235 LVAGLASIVPYLGVIVGISIAALVAFFQFGEWLPLLGVALVFGVGQVVESTLLQPVLLGD 294

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  +   F ++ G +  G  G+ +   + A++ V+ +      K ++
Sbjct: 295 KIGLHPIAVIFAVLAGGQLFGFTGILLALPVAAIVMVVLRYLHERYKNSR 344


>gi|330993492|ref|ZP_08317427.1| UPF0118 membrane protein yrrI [Gluconacetobacter sp. SXCC-1]
 gi|329759522|gb|EGG76031.1| UPF0118 membrane protein yrrI [Gluconacetobacter sp. SXCC-1]
          Length = 374

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 108/343 (31%), Gaps = 10/343 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   + + I+++ ++ +      + +A ++      +      +             V +
Sbjct: 40  LRLTLAITIVVMLIWVVGDVLMVIFAATLVAVILHNLAGIVERRTHMPYWLALGAVVVVL 99

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      +         +  +L + +               ++  GM  S      L + 
Sbjct: 100 IGALTGLIWSSGPEISEQAVKLRTALS----------EQAHNLRNGMGDSSTGRMILDNL 149

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +    +E     +G   +    + F         ++  ++IA  +F          +  
Sbjct: 150 PTTLGGNEATSGNSGFGSLAGSMTGFVSSAFGAAGTLAVILIAGLYFAISPELYVNGMLR 209

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +  H +    +++     + + +   G  +     GL+     W  GVP  +ALGV+  +
Sbjct: 210 MVPHPYRMTARELLLTAGRTLWAWTAGQALDMTVVGLLSFIGLWCIGVPLALALGVVAGL 269

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
              IP          ++ + +         +    A   F     + P +    +++P  
Sbjct: 270 ANFIPYIGAFVGAVPAVLIALSQGTREGFMVMGLYAAIQFFEGNVMAPLIQRHAVQMPPG 329

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            T          +G+ GL +   L A +  +   +   +KE++
Sbjct: 330 LTILSQTIFGTILGIPGLILASPLTAALLAVADRATPELKEDE 372


>gi|316932016|ref|YP_004106998.1| hypothetical protein Rpdx1_0627 [Rhodopseudomonas palustris DX-1]
 gi|315599730|gb|ADU42265.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           DX-1]
          Length = 381

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/351 (19%), Positives = 150/351 (42%), Gaps = 3/351 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +       +++ +  +  + L   ++ VL  ++I     P+               A+ +
Sbjct: 4   SENKFFILLLVTVTGLFGWILWPLYSAVLWGMVIAILFAPLNRWLNQAFGFRRNLAALTS 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++ + ++PL  L      E   + +K+   N   +   R L       W  +L  + 
Sbjct: 64  VTIIVLMVLLPLSLLGAALAREAAGMYTKIESGNLDLLNTLRELLAARP-DWIGDLLGRF 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      + +   G  ++   A   G    D+ +++  M+  LFF  RDG  ++ 
Sbjct: 123 GVGNLADLQQRLSAVLLRGSQYLAGQALGIGQSTFDFTVNLFVMVYLLFFLLRDGDLVAG 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L   +  ++      VIR+T  G  +IA+ +G + G A+++ G+   +   V
Sbjct: 183 RIRRATP-LGVDHQTRLLDKFTVVIRATVKGNMLIALIQGSLGGLAFYVLGISGALMWAV 241

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P     + +  +++YL+  G+I++   L +WGA+ + +VD  LRP LVG   
Sbjct: 242 VMAFLSLLPAVGAGLVWLPMALYLIFTGSIWHGIGLIVWGALVIGMVDNVLRPILVGKDT 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           ++P        +GG+   GL G  +GPV+ A+    W     + +E  +  
Sbjct: 302 RMPDYVVLISTLGGLEVFGLNGFVVGPVIAAMFIAAWDIYSTSREEAGDTP 352


>gi|295699526|ref|YP_003607419.1| hypothetical protein BC1002_3896 [Burkholderia sp. CCGE1002]
 gi|295438739|gb|ADG17908.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 688

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 42/357 (11%), Positives = 105/357 (29%), Gaps = 26/357 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++ +++  I +  LYF      P+  A+++ F   P+  +    K        V +  
Sbjct: 26  EGLVTFVVAVIAVACLYFASAVMIPITLAILLSFLVAPLADALCRLKLGH-----VASVC 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + + +  +  L      ++ +L + +             +  +  G           +
Sbjct: 81  AAVLISVSVIALLCAVIATQLTDLAAGMPRYQATIQHKLDTVHSLTIGKLNRFASEAGQA 140

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASR-------------------FGMIFLDYCLSIIF 169
             ++     +              AS                         +    +   
Sbjct: 141 LQRATIEPPQLRAPNGAAAATSPQASTAVPVEVREPVPTPFELARRVLSPAISPLETAFI 200

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + +           +  +   L           +     + +   F+    +  G G+V+
Sbjct: 201 VFVVTIVILLQRDDLRDRAIRLFGSRDLHRTTTVMDETARRLSRYFVSQLGVNTGVGVVI 260

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAI 287
           G+   L GVPS +  G++ A++ ++P         +   L   +      A    +   +
Sbjct: 261 GAGLLLIGVPSPILWGILAALLRLVPYVGIWIAAILPTALAAAVSPGWEMAIWSLVLFVV 320

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               V + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 321 AELAVGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRH 377


>gi|302335911|ref|YP_003801118.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
 gi|301319751|gb|ADK68238.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
          Length = 476

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 124/336 (36%), Gaps = 2/336 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  +  ++L  + G    +L   + GF   P+ +             A+ A + ++  
Sbjct: 39  AVVFVLATLALGKIWGAVELLLVGALFGFICSPMTNGLERH-GVPRGLAALAALLVMVAA 97

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +V L+ LF   + E  E++ +V               D  G    SE+  ++L    + 
Sbjct: 98  LVVLLVLLFPPFVREAIEVLQQVPSYVSQARGAIASFWDAYGSSKTSEV-QQNLDQMVNA 156

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                    ++ ++ +        M      +++   ++  ++F +D   I+++   +  
Sbjct: 157 ASNLGISASSDLLEKLSSGLMDNVMSLFSNTVTLFLGLVLGYWFAKDYPRIAREFRIVAG 216

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +  ++ + +     G+ I ++ +G++    + L G P    +  +  ++  
Sbjct: 217 PDHERSLSVMLCVMSRSMGGYMRGIVITSLLDGILSFVGFSLIGNPYAGLMATLAGVLHF 276

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P   P    A++  L +      A    +   I   +VD  + P ++   +K+    + 
Sbjct: 277 VPVIGPWVSAAMATSLALFVGPLLAIETLMVAVIATNVVDNVISPLVMQSAVKVHPALSL 336

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            G++ G    G LG+ +   L A I  ++     + 
Sbjct: 337 LGIMVGSALGGTLGMILAIPLTAAIRSVFVYYFESR 372


>gi|227494765|ref|ZP_03925081.1| integral membrane protein [Actinomyces coleocanis DSM 15436]
 gi|226831765|gb|EEH64148.1| integral membrane protein [Actinomyces coleocanis DSM 15436]
          Length = 411

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 103/325 (31%), Gaps = 9/325 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+I   + ++  F  P+L AL+      P       K +      A ++ +  + + + 
Sbjct: 2   IFLIGYLVSYVYIFVVPILLALLFAVLLDPFNRMLKRKLKFPPALAAGVSLIFGLGIVVG 61

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +         + K+L  +        I   R             + + ++       + 
Sbjct: 62  LISAASTQIAFQFKDLAGRAQQGADKLIAWIRT--------EPFGIDSSYIDTHLEDLVD 113

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + T L       +     +            I  +  LFFF ++G +I      +     
Sbjct: 114 AITGLVKGNSSTLATGVLQVSTSIGTILTGAILSLFVLFFFLKEGRTIWLWFVRILPEGA 173

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                + +      +         +A  + L +G   +  GVP  + LGV+  + + IP 
Sbjct: 174 REPLHESAIRGWLTLGGYVRAQITVAAIDALGIGLGAYFLGVPLAIPLGVLVFVGSFIPI 233

Query: 257 GAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               I+ +   +  L+      A  + +       I    L+P+L+   + L  L     
Sbjct: 234 IGAMITGSIAVLVALVDQGPQTAVIMIVVILAVQQIEGNLLQPWLMSSAVSLHPLAVLLS 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV 340
           +  G    G+ G      + A I  
Sbjct: 294 VACGSFLFGISGALFAVPIAAFINT 318


>gi|53722867|ref|YP_111852.1| hypothetical protein BPSS1848 [Burkholderia pseudomallei K96243]
 gi|52213281|emb|CAH39324.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 364

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 124/327 (37%), Gaps = 3/327 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  FF  +    I+     P+     ++  +     A++    ++ + I+PL F+   
Sbjct: 36  WILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLAALVTLSLIILIVILPLAFVTAT 95

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+     ++     +     +             L    L+    ++          
Sbjct: 96  LVQEIAYAYQQIKTMQPNMTQYFQEFMHALPSSVHRVLHNYGLTDIAGIQKKLTDG-AAA 154

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F+   A   G     + +S   M+  +FF  RDG  I +++      L   + + + 
Sbjct: 155 ISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALP-LDEEHKQHLL 213

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
                V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P     + + 
Sbjct: 214 TKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVWV 273

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +GG+   
Sbjct: 274 PAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALF 333

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G  IGP++ AL    W       +
Sbjct: 334 GINGFVIGPLVAALFMASWDIFARTEQ 360


>gi|145296788|ref|YP_001139609.1| hypothetical protein cgR_2691 [Corynebacterium glutamicum R]
 gi|140846708|dbj|BAF55707.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 476

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 110/339 (32%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF----FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++++ I  V    + GF      PV+ AL++    WP         +  +    VI
Sbjct: 88  WALRFIVLVIAGVIALRMLGFIWVGILPVVLALLVCTVLWPPVKWLREH-KIPAALAVVI 146

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L       +      + K++V +  +  +  +             W       
Sbjct: 147 TILGFFALIGGVFAAIAPSVSSQTKQVVDQATVGIEDLMD------------WVQGPPFN 194

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    +   T +  +    I               +++  M++  FFF +DG    
Sbjct: 195 FDISQFEGALNDLTSMLQSQSSTIASGVFSGLSTASSIVVTLAVMLVLTFFFLKDGPRFL 254

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +          +  ++       +        ++++ + + +G    L GVP  +AL 
Sbjct: 255 PWMRGFTGENAGWHLTEVLTRTWNTLAGFIRAQALVSMVDAVFIGIGLLLLGVPMALALA 314

Query: 246 VITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT     IP    + +     I  L+   + NA  + +       I    L PFL    
Sbjct: 315 VITFFAGFIPIVGAVSAGALAVIIALVTNGVANALLVLVLILAVQQIEGNILSPFLQSKA 374

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A +AV  +
Sbjct: 375 MNLHAAVVLLSVTVGSTMFGIIGAFLAVPVAATLAVWVR 413


>gi|293604365|ref|ZP_06686772.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292817242|gb|EFF76316.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 365

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 135/346 (39%), Gaps = 3/346 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E+          +++ + +   + L  F+  V    I+     P+    + +      
Sbjct: 1   MSESSSLHHRTFLLLLVVVSIAFGWLLWPFYGAVFWGAILAIIFGPLQRRLVKRMGGRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+I  + V+ L I+PL+ +    + E   L   +     +     +            
Sbjct: 61  LSALITLLGVLLLVILPLVAISGSLVREGANLYQSIKSGELNFGAYFQQAMAALPPSVHD 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L+   SL+             F+   A   G     + +S   M+  LFF  RD
Sbjct: 121 VLARFDLADIPSLQEKLSAGAMQ-ASQFLATQALSIGQDTFQFVISFGIMLYLLFFLLRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S ++      L  A+ + + R    V+R+T  G   +A  +G + G  + +  +  
Sbjct: 180 GPELSARIKRAMP-LSEAHKQHLFRKFTTVVRATVKGNIAVAAAQGALGGIIFSVLSIQG 238

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI   ++++P     + +  V+IY L+ G +     L  +G + + +VD  LRP 
Sbjct: 239 ALLWGVIMGFLSLLPAVGAGLIWAPVAIYFLLTGAVVKGAVLIAFGVLVIGMVDNVLRPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   K+P        +GG+   GL G  IGP++ AL    W   
Sbjct: 299 LVGKDTKMPDYVVLISTLGGMALFGLNGFVIGPLIAALFMASWDLF 344


>gi|329769779|ref|ZP_08261180.1| hypothetical protein HMPREF0433_00944 [Gemella sanguinis M325]
 gi|328838141|gb|EGF87759.1| hypothetical protein HMPREF0433_00944 [Gemella sanguinis M325]
          Length = 386

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 116/316 (36%), Gaps = 11/316 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +    APV+ A +  +   P+ + F  K        +++A +    + +V ++ +    
Sbjct: 65  IVSSIIAPVILAYVFYYILNPLVNLFSKKL--PRFASSLLAMLVGFVIILVVIIGMVPII 122

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + + + L+  +    +         SD        E    +L+          + + +  
Sbjct: 123 VEQTQTLIISIPKYIEMVRDYLDAYSDNAYMQVVIEYINNNLNT---------SKMSSEA 173

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +      A             ++ M   LFF  +D  +  + L SL              
Sbjct: 174 VTIATSVAQGVASSLSATATILMTMPFVLFFLLKDASNFKEYLVSLLPKKLKKPVVDTID 233

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  ++++  G++L   Y + G+    +L  I A ++++P   PI     
Sbjct: 234 EIDNKVGSYIQGQMLVSLCIGVMLYIGYTIIGLHYGFSLATIAAFLSIVPYIGPIIAITP 293

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    +      + +   I  F+    + P ++G  + +  L   F ++ GV   G+
Sbjct: 294 AMLVAASTSWIMVVKMLVVWGIVQFLEANIISPNIMGKSMDMHPLTVIFVILIGVNLAGV 353

Query: 326 LGLFIGPVLMALIAVI 341
           +G  +G  + +++ V+
Sbjct: 354 VGAILGIPVYSMLKVL 369


>gi|297243766|ref|ZP_06927696.1| permease of the PurR regulon [Gardnerella vaginalis AMD]
 gi|296888187|gb|EFH26929.1| permease of the PurR regulon [Gardnerella vaginalis AMD]
          Length = 529

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 105/348 (30%), Gaps = 19/348 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      + ++   I+  + + L+F           V+ ++ I     P+    I     
Sbjct: 38  RPPDWLGRALIYVAIVTFVSIFLWFAWNSISFIVFDVVISIFIALAMEPLVVRLIKH-GW 96

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                +      ++ +  + L         ++  +V  +                     
Sbjct: 97  RRGVASGFTLTGLLVVISLLLALFGNLFAQQVVSMVMGLPDLYNQFANF----------- 145

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    + + + L +     ++T+ +      A       +   L ++ +I+  ++ 
Sbjct: 146 -VLHYTGFKMPNIEQLGMEILKHVQTSWVVDFAGQALNTTWGLMTVLLDLLTIIMVTYYI 204

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G ++ + +           +  I  +V + I S      I+A    +       +  
Sbjct: 205 SAAGPAMRRSMCRWMNPQAQRRFLFIWSVVQEQISSFLFSRIILAAINAVGTAIFLIVMN 264

Query: 238 VPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +P  + L +   I++  +P  G  +      +          A    ++  I   I +  
Sbjct: 265 IPYWLPLSLFCGIVSQFVPTIGGYLGGALPILVAWGSNGFGAAVATLIFITIYQQIENMV 324

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + P +    + L     F  ++      G LG F+   + A +  I++
Sbjct: 325 ISPKISEKTMDLNPAVAFISVLVMGAVFGALGAFLALPVTASLQAIFR 372


>gi|172062740|ref|YP_001810391.1| hypothetical protein BamMC406_3708 [Burkholderia ambifaria MC40-6]
 gi|171995257|gb|ACB66175.1| protein of unknown function UPF0118 [Burkholderia ambifaria MC40-6]
          Length = 355

 Score =  143 bits (360), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 141/357 (39%), Gaps = 7/357 (1%)

Query: 1   MRETML----NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           MRE  +    + Q    +++  + +   + L  F   V    I+     P+     ++  
Sbjct: 1   MREPSMESGHDHQKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFG 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
           +     A+++   ++ + I+PL+F+    + E+  +  ++  A  +       +      
Sbjct: 61  KRRNLAALVSMSLIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSRYFHDIIHALPT 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              + L    LS+   ++             F    A   G     + +S   M+  +FF
Sbjct: 121 SIQNLLQKYGLSNIPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMVFF 179

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             RDG  I +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ 
Sbjct: 180 LLRDGGEIGRRVRRSIP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWIL 238

Query: 237 GVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           G+   V  G + A ++++P     + +   ++Y L  G I+    L  +    + +VD  
Sbjct: 239 GIEGVVLWGALMAFLSLLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNL 298

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LRP LVG   K+P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 299 LRPILVGKDTKMPDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 355


>gi|309810412|ref|ZP_07704246.1| putative membrane protein [Dermacoccus sp. Ellin185]
 gi|308435652|gb|EFP59450.1| putative membrane protein [Dermacoccus sp. Ellin185]
          Length = 494

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 110/340 (32%), Gaps = 18/340 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +  +R  I+ +    ++           P++  L I    WP  +    ++       A+
Sbjct: 79  RWSLRISIIIVTFYLVWRALTPFWVIILPLILGLFITTVLWPPAAWL-RRRGVRPALAAL 137

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            + +  + +    +  +      E  EL  K +          +                
Sbjct: 138 SSVLGGLLVVGGIIAAIVPTVAAEAPELARKSMEGVSQIQRWLQ------------GPPL 185

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K  +      +           D I               ++++  +I  FFF +DG   
Sbjct: 186 KIPATQIDNAVNVINEKLKTSGDAIASGVFSGVTTVGSILVTLVLSLILAFFFIKDGDRF 245

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  +      A+  ++     + +        I++  + + +G      GVP  + L
Sbjct: 246 LPWVRLVTGERTGAHVTEVFTRAWQTLSGFIRTQAIVSAIDSVCIGIGLIACGVPLALPL 305

Query: 245 GVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VIT     IP     ++     +  L+   +  A  + +   +   +    L+P L   
Sbjct: 306 CVITFFGGFIPIVGATVAGALAVLVALVTKGVTTAIIVLVIIILVQQLEGHILQPLLQSR 365

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L  +    G+  G    G++G F+   ++A +AV+++
Sbjct: 366 SMSLHPVLVLLGIAAGSEDHGVIGGFLAVPVVATLAVLFR 405


>gi|227819774|ref|YP_002823745.1| ABC transporter transmembrane protein [Sinorhizobium fredii NGR234]
 gi|227338773|gb|ACP22992.1| integral membrane transport protein [Sinorhizobium fredii NGR234]
          Length = 672

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF    F P+  A+++ F   P+      +     +   +    +        L      
Sbjct: 55  YFASEVFLPLAIAILLTFALAPVVFRL-RRAGLPRSVAVIGTVATAFL----FLSAFSII 109

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             +++ E+   +     + I   R L +        E  ++ +    +     +     +
Sbjct: 110 LAMQVSEVAQNLPTYQYNIIEKIRVLKEAGSESQIFERLSRVVERISTEISRPKPETPVS 169

Query: 145 ---------------GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                            +   +         L    +   +I+ + F   +   +  +  
Sbjct: 170 PAPEPEQEPLLVEIFAPERPLQTLRNIIDPLLGPLATTGLVIVVVIFMLFEREELRDRFI 229

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  +       +  +     +    L   ++ +  G+ L    WL G+P+ +  G++  
Sbjct: 230 RLVGYGDLHRTTEALQDAGARVGQYLLMQLVVNVTYGIPLAIGLWLLGIPNAILWGMLAI 289

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++  +P   P+   A+ ++L        +  +           + +  + P+L G    L
Sbjct: 290 VLRFVPYIGPVIAAALPLFLAFAAAPGWSLLVWTAALFIALELLSNNVVEPWLYGSRTGL 349

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L      +      G +GL +   L   + V+ + 
Sbjct: 350 SPLAIIVSAIFWAWLWGPVGLVLSTPLTVCLVVLGRH 386


>gi|319779612|ref|YP_004130525.1| hypothetical protein TEQUI_1468 [Taylorella equigenitalis MCE9]
 gi|317109636|gb|ADU92382.1| membrane protein, putative [Taylorella equigenitalis MCE9]
          Length = 387

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 153/355 (43%), Gaps = 3/355 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+       G    +++ I +  ++ L  +F+ +  A+I      PIY   + K      
Sbjct: 1   MQSKNRVFYGFYMGLLLLITIGFIWVLAPYFSALFWAVIFAVLFRPIYLKLLEKMPGKRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  +  + L I+P+  +      +  +L  KV     +       + +       S
Sbjct: 61  LSALLTLILAIILGIIPIGIIATSLTSQAVDLYQKVESGQINFGEYVDLVYNNLPSPIHS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   H++   S +      L   G   +             + + +  M+  ++FF RD
Sbjct: 121 FLEKFHITSEFSFREKLLQ-LFNQGSKMMATELVNISQNTFTFIMDLGIMLYLMYFFIRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +I + +      L   +  K+      V+R+T  G  ++AI +G + G  + + G+PS
Sbjct: 180 GETIKEYIKRFTP-LSGNHKIKLFSKFLTVVRATVKGNMLVAIAQGALGGFIFAVLGIPS 238

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI A ++++P  GA + +  V+IYLL+ G++     L +WG + + + D  LRP 
Sbjct: 239 PILWGVIMAFLSLLPAIGAALVWLPVAIYLLVSGSLVEGIILMVWGVVVIGMSDNLLRPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LVG   +LP        +GG+   GL G  IGP+L AL    W E   A+   +E
Sbjct: 299 LVGKDTRLPDYLILITTIGGMAVFGLNGFVIGPLLAALFITFWGELPNAVGLLEE 353


>gi|308176535|ref|YP_003915941.1| putative permease [Arthrobacter arilaitensis Re117]
 gi|307743998|emb|CBT74970.1| putative permease [Arthrobacter arilaitensis Re117]
          Length = 443

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 105/349 (30%), Gaps = 13/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + +++ +L  +     PVL + ++     P+ ++  S+          I  +
Sbjct: 53  RFLIVVAALGVLVWALSKISLLVIPVLVSALLAGLLSPVVNAMNSRLAVPRGLAVGITLI 112

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L    L             L ++ +   +                W      K  +
Sbjct: 113 GFFALVTAGLSLAGQRLTAGFNALWTQALAGIEQVQN------------WLFNGPLKLTN 160

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +             I   A  +           +  I AL F   DG  I   L
Sbjct: 161 DDLQSVLDDTLAQLRGNATNILSEAISWTSAIGQILTGTLLAIFALIFLLLDGRKIGLFL 220

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L                   + S      ++A+ + + +G   +  GVP  + LGV+ 
Sbjct: 221 INLLPRRARPAMDGALTRGWASLVSYVRVQMVVAMIDAIGIGLGAFFLGVPLAMPLGVLV 280

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I + IP     I+     +  L+     NA  +     +        L+P ++G  + L
Sbjct: 281 FIGSFIPIVGALITGALAVLLALVANGWINALIMLAVVLLVQQAESNILQPLIMGKAVSL 340

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             L     + GG    G+ G      L+A++  + +       E    +
Sbjct: 341 HPLAVVLAVAGGTMLAGIPGALFAVPLLAVLNAVIRYLSHRSWETDAHV 389


>gi|282600569|ref|ZP_05979073.2| putative membrane protein [Subdoligranulum variabile DSM 15176]
 gi|282572006|gb|EFB77541.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
          Length = 424

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 106/338 (31%), Gaps = 7/338 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFI 75
            +     L    +P    ++I F   P+   F                +++ +    L  
Sbjct: 58  FVGGFRELLRILSPFAGGVVIAFVLNPMAMWFHRVLLKQDPRLRWVAILLSYIVAALLLA 117

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +    +    +  +  L + +    +       +L D  G    + L    +       +
Sbjct: 118 LLAWLVVPQIISSIAILFNSLPGYFEGLQNTLLYLQDHYGLQMQNVLR---ILDDSEAMM 174

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    +  I          F+    ++   +  L    +    I   + +     
Sbjct: 175 RELYNVAVAAMPQIVTTIGSVASNFVAVFTAVASSVYMLSGKDKLIHQIKTLVHAFLPES 234

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +   +I     +     F+G  I +   G++      +  +   + + V   I  +IP
Sbjct: 235 VASNTLRICHYANENFTGFFVGKIIDSAIIGVLTFVLMSILRLDFALLVSVFVGITNIIP 294

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      SI++L+  +   A    +       +    + P ++G  I +  L   F 
Sbjct: 295 VFGPFIGAIPSIFILLLVDPVQALIFAVLILFIQQLDGNFIGPKILGQSIGISSLWVLFS 354

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +V G    GL+G+ +G  L A +  +  E ++ + + +
Sbjct: 355 IVVGGDLFGLVGMVVGVPLFATLYGLLHEVVVYLLDRR 392


>gi|126728913|ref|ZP_01744728.1| hypothetical protein SSE37_08798 [Sagittula stellata E-37]
 gi|126710843|gb|EBA09894.1| hypothetical protein SSE37_08798 [Sagittula stellata E-37]
          Length = 385

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 111/353 (31%), Gaps = 15/353 (4%)

Query: 5   MLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +   + +  W I   I    L+FL     P +    I +   P+      +   S     
Sbjct: 3   LPVRKQLKYWGIAAAIFAVTLWFLGNVLLPFVLGGAIAYCLDPVADRLE-RAGLSRNASV 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + TV+ + +F+V  L +    + +   L        +                      
Sbjct: 62  GVITVAGVLIFVVLTLAIIPLLIGQATALFETAPQLFRDLQAFL----------TEKFPN 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      + S           +   A       L+  +  + + +   +   D  +
Sbjct: 112 LMTEGGVVQQSLASLGETIKTKGAAVAETALASVGSLLNVLMLFLIVPVVAVYMLIDWDN 171

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  Q+D+L         ++++R V  V+     GM  + +  G       W  G+   + 
Sbjct: 172 MVAQIDTLVPLDHRETVRELARSVDSVLAGFIRGMGSVMLILGTYYAVLLWAVGLQFGLV 231

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +GV+   +  IP    I    ++I L      G  +    ++       FI    + P L
Sbjct: 232 VGVVAGFLTFIPYVGAIVGGGLAIGLALFQFWGEWWWIVAVWAIFQSGQFIEGNIVTPRL 291

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG  + L  +     L       G +GL +   L A I VI +      +E+K
Sbjct: 292 VGSSVGLHPVWLLLALSVFGALFGFIGLLVAVPLAAAIGVIVRFLGDRYRESK 344


>gi|270291466|ref|ZP_06197688.1| permease [Pediococcus acidilactici 7_4]
 gi|304385181|ref|ZP_07367527.1| membrane protein [Pediococcus acidilactici DSM 20284]
 gi|270280312|gb|EFA26148.1| permease [Pediococcus acidilactici 7_4]
 gi|304329375|gb|EFL96595.1| membrane protein [Pediococcus acidilactici DSM 20284]
          Length = 381

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 107/317 (33%), Gaps = 4/317 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F K    P++ A ++ +   P+     S+ +        I  V V  L +  ++ +    
Sbjct: 53  FFKIVGFPIILAGVLYYLLNPLVDRLESRFKMKRVVSISIIFVGVAILIVAGVVAVIPVI 112

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +   L+          I     + + P      + +    S          T +  N 
Sbjct: 113 REQTAALIQNWPDYWNAAIEKINGILNDPRLGDFQKQFHGVSSETIQSWSKKVTSVANNT 172

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +    S    + +        M   LF+  RDG  + + L       +   + +I  
Sbjct: 173 VTSLGSVLSLITKVVIGIIT----MPFILFYLLRDGHDLPEYLAKAFPVRYRPQFLQILG 228

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +     G  ++A    L+    Y + G+   + L V    + +IP          
Sbjct: 229 EINTQLSQYIRGQLVVAFFVALMFFIGYLVIGLKFALTLAVAAGFLNLIPYLGSFLAMVP 288

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SI +    +      + +  AIE  +  + + P ++G  + +  +     L+   +  GL
Sbjct: 289 SIVIGAFISPVMLVKVLIVFAIEQTLEGRFISPLVLGSNLAIHPVTILVVLLASGQMFGL 348

Query: 326 LGLFIGPVLMALIAVIW 342
           +G+  G    A++ V++
Sbjct: 349 VGVIFGIPAYAVLKVLF 365


>gi|27467958|ref|NP_764595.1| hypothetical protein SE1040 [Staphylococcus epidermidis ATCC 12228]
 gi|27315503|gb|AAO04637.1|AE016747_134 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
          Length = 409

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 124/354 (35%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
            ++  +++ I++       Y  + F         P++ +L++ +   PI +     +   
Sbjct: 38  ALIALVLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYR-IP 96

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 I  V+++ +  + +  L      +++  +                L++      
Sbjct: 97  RLLGITIIYVAIIGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNN----NT 152

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++            + ++  D      + F     +  + I      LFF  
Sbjct: 153 ILSGYMGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFFML 212

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG         +    F   +  +   +   + S   G  I++   GL+L   Y + G+
Sbjct: 213 KDGHKFKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSIIGL 272

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P
Sbjct: 273 KYALVLASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFISP 332

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     MG++G+ IG  L A++ V+     M  K  
Sbjct: 333 NVMGKTLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRR 386


>gi|213691447|ref|YP_002322033.1| protein of unknown function UPF0118 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522908|gb|ACJ51655.1| protein of unknown function UPF0118 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 550

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 109/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAVIVFMFCWRSWGDISYLVFDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +                        +  T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYGQIREFAD------------QYTT 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+   +       +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINAICTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLSVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|46190495|ref|ZP_00206488.1| COG0628: Predicted permease [Bifidobacterium longum DJO10A]
 gi|189440703|ref|YP_001955784.1| permease [Bifidobacterium longum DJO10A]
 gi|189429138|gb|ACD99286.1| Hypothetical permease [Bifidobacterium longum DJO10A]
          Length = 563

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 108/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAVIVFMFCWRSWGDISYLVFDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +              +            T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYGQIREFVDQHA------------T 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLSVLAFGSLFGAFGAFLALPVTASLQAIFRAYTRRYE 386


>gi|290508508|ref|ZP_06547879.1| hypothetical protein HMPREF0485_00279 [Klebsiella sp. 1_1_55]
 gi|289777902|gb|EFD85899.1| hypothetical protein HMPREF0485_00279 [Klebsiella sp. 1_1_55]
          Length = 369

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 76/355 (21%), Positives = 142/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A I+     P+ +   ++  E +   A++  
Sbjct: 7   TKGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALLTI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  +   PL  +      E+  + SK+   +     V   L     G   S L   +L
Sbjct: 67  VIICLIVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLFAHLPGWARSFLAEHNL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q ++         +G  ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 127 DSAQQIQQQLSDVALKSG-QYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                  L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 186 TLESLP-LSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWVAGLDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +IYL   G ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W          N +++   F
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWNLLSGREHAGNTDELDEEF 359


>gi|19553991|ref|NP_601993.1| permease [Corynebacterium glutamicum ATCC 13032]
 gi|62391636|ref|YP_227038.1| permease [Corynebacterium glutamicum ATCC 13032]
 gi|41326978|emb|CAF20822.1| Predicted permease [Corynebacterium glutamicum ATCC 13032]
          Length = 476

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 53/339 (15%), Positives = 110/339 (32%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF----FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++++ I  V    + GF      PV+ AL++    WP         +  +    VI
Sbjct: 88  WALRFIVLVIAGVIALRMLGFIWVGILPVVLALLVCTVLWPPVKWLREH-KIPAALAVVI 146

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L       +      + K++V +  +  +  +   +                 
Sbjct: 147 TILGFFALIGGVFAAIAPSVSSQTKQVVDQATVGIEDLMDWVQ------------GPPFN 194

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    +   T +  +    I               +++  M++  FFF +DG    
Sbjct: 195 LDISQFEGALNDLTSMLQSQSSTIASGVFSGLSTASSIVVTLAVMLVLTFFFLKDGPRFL 254

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +          +  ++       +        ++++ + + +G    L GVP  +AL 
Sbjct: 255 PWMRGFTGENAGWHLTEVLTRTWNTLAGFIRAQALVSMVDAIFIGIGLLLLGVPMALALA 314

Query: 246 VITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT     IP    + +     I  L+   + NA  + +       I    L PFL    
Sbjct: 315 VITFFAGFIPIVGAVSAGALAVIIALVTNGVTNALLVLVLILAVQQIEGNILSPFLQSKA 374

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A +AV  +
Sbjct: 375 MNLHAAVVLLSVTVGSTMFGIIGAFLAVPVAATLAVWVR 413


>gi|315639996|ref|ZP_07895123.1| membrane protein [Enterococcus italicus DSM 15952]
 gi|315484258|gb|EFU74727.1| membrane protein [Enterococcus italicus DSM 15952]
          Length = 395

 Score =  142 bits (359), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 112/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I +++     FL     PV+ A I+ +   P       +      +  +   + V+ L +
Sbjct: 50  ISYLLTPVWQFLSIVGLPVVLAGILYYLMNPTVDFLEKR-GVKRIYSIIGLFLLVIGLIV 108

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++ +      +    V++          V   L   P                 +   
Sbjct: 109 WGVVVIIPEIRDQTISFVNQFPSYVDTAEKVMNDLFSDPVFHQFQAQVASSSEKLMNSLT 168

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +  +    I  F      IF+        M   LF+  +DG  ++  L       
Sbjct: 169 DIIKNVSKSTFQNIGNFFGAVATIFVAVIT----MPFILFYLLKDGKKLAPYLVDFLPTK 224

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + + + S   G   +A    ++    + + G+   + LG++  ++ +IP
Sbjct: 225 MRKSTLRVLTEMNQQVSSYIRGQLTVAFAVAVMFMIGFSIIGLEYSITLGIVAGVLNLIP 284

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     +I+L I G       + +   IE  +  + + P ++G  + +  +   F 
Sbjct: 285 YLGSFLAMIPAIFLGIVGGPVLLLKVIIVFVIEQTLEGRFVSPLVLGSQLSIHPITILFV 344

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+   +  GL+G+ +G  + A   VI        K+
Sbjct: 345 LLTSGKLFGLVGVILGIPVYAAAKVIITNVFQWYKQ 380


>gi|170751399|ref|YP_001757659.1| hypothetical protein Mrad2831_5018 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170657921|gb|ACB26976.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 372

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 94/330 (28%), Positives = 154/330 (46%), Gaps = 5/330 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIATVSVMCLFIVPLLFLF 82
           + L  F   +  A+++    WPIY     +      +  L  + T +V  +F+ PL  L 
Sbjct: 45  WILHEFLPALAWAVVLAIALWPIYQRLEHRFPPGKHNILLPTLMTAAVALVFLAPLAILG 104

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E  ++   V  A  +GIP P +L  +P G   +  W                  +
Sbjct: 105 IQAAREAHDVAEFVRNAEANGIPAPEFLQHLPYGAAQATAWWNDNLGHAQAGSDLLRRFE 164

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +    +   +   G   +   +   F ++ALFF +RD  ++  Q  +    LF    ++
Sbjct: 165 NH---SVLGASRNVGREVVHRIVLFGFSLVALFFLFRDWRTVRDQSLTACHRLFGPRGER 221

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++R +   +  T  G+ ++ +GEG VLG  Y  AGVP  V LG  TA+ AMIP GA ++ 
Sbjct: 222 VARQMVASVHGTVDGLVLVGLGEGFVLGIVYHFAGVPHPVLLGAFTAVAAMIPFGAAVAI 281

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L+  G++  A  +   G +  F+ D  +RP L+GG  KLPFL    G++GGV T
Sbjct: 282 AVAALLLVAAGSVTAALVVAAAGLVVTFVADHFIRPALIGGTTKLPFLWVLLGILGGVET 341

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            GLLGLF+GP +MA + ++W+E        
Sbjct: 342 FGLLGLFVGPAVMAALVLLWREFTEGQDAT 371


>gi|308174870|ref|YP_003921575.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607734|emb|CBI44105.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 449

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 109/332 (32%), Gaps = 6/332 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI      F+   F P+L + I+ F   PI      K     T   ++  +  + L  
Sbjct: 107 VSFIFQPFFGFISTLFFPILISGILFFIFNPIVRLLEKK--IPRTLAILLIYLVFIGLIA 164

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +      ++  L +           +   LS      W                 
Sbjct: 165 FMFTAIGPIVASQVTGLFNNFPDYINQIQSLTTQLSHSKWFTW----MMTQDYVSIEKIQ 220

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S T    +    I    S    +  +  L +I +   LF+  +DG         +    
Sbjct: 221 QSLTGFLQSLPQNITASLSAVFGVVTNITLVVITVPFILFYMLKDGRRFPLLAVKILPSS 280

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A  +KI   +   + + F G  +I +  G      YW+ G+P  + LG++ A+  +IP
Sbjct: 281 YRAEGRKIFNDLYVTLAAYFQGQLLICLFVGTACFIGYWIIGLPYALILGMVIAVTNIIP 340

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +    +   A    +   +   +    L P ++G  +    L     
Sbjct: 341 YLGPFLGAAPAVIIAFMDSPAKALFAVIVVVVVQQLDGNLLSPLVIGKRLNTHPLTIILL 400

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           LVG     G+L + +   + A++       + 
Sbjct: 401 LVGAGSFGGILAMILAVPVYAVLKAFVLNIVR 432


>gi|241763379|ref|ZP_04761434.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
 gi|241367421|gb|EER61732.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
          Length = 357

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 137/343 (39%), Gaps = 3/343 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             L    +   ++  + L     L  F   V   +++     P +   + +   S    A
Sbjct: 3   PTLFQNRVFLILLTLVTLAFGAILWQFHGAVFWGVVLAILFTPFHRKLLRRMPGSPNLAA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +      + + I+P+  +    + E   +  ++     +     + + D     WA+ L 
Sbjct: 63  LATLGLCLVIVILPMTLISLSLVQEATGIYDRLKSGQLNFGQYLQQILDAMPA-WAAGLL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +             + +      F    A   G   L++ +    M+  LFF  RDG +
Sbjct: 122 DRFNLTTLGELQEKLSSVAVQASQFFATKALSIGQNTLEFVVGFGVMLYLLFFLLRDGSA 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++ +++     L   + ++++     VIR+T  G  ++A  +G + G  +W+ G+   V 
Sbjct: 182 LAARINRATP-LDTEHKRQLASKFTTVIRATVKGNIVVAASQGALGGLIFWILGIQGPVL 240

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GV  A ++++P     + +  V++Y L  G ++    L L+G   + +VD  LRP LVG
Sbjct: 241 WGVAMAFLSLLPAVGAGLVWGPVALYFLATGAVWQGVVLALYGVGVIGLVDNILRPLLVG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              K+P        +GG+   GL G  IGP + AL    W   
Sbjct: 301 KDTKMPDYVVLISTLGGMALFGLTGFVIGPAIAALFIASWDLF 343


>gi|254248847|ref|ZP_04942167.1| hypothetical protein BCPG_03698 [Burkholderia cenocepacia PC184]
 gi|124875348|gb|EAY65338.1| hypothetical protein BCPG_03698 [Burkholderia cenocepacia PC184]
          Length = 353

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 136/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A++   
Sbjct: 11  QKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVTMS 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +       +         + L    L+
Sbjct: 71  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLLQKYGLT 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 131 NIPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 190 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 248

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L+ G I+    L  +    + +VD  LRP LVG   K+
Sbjct: 249 AFLSLLPAIGASLVWVPAALYFLMIGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 309 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 353


>gi|319786686|ref|YP_004146161.1| hypothetical protein Psesu_1080 [Pseudoxanthomonas suwonensis 11-1]
 gi|317465198|gb|ADV26930.1| protein of unknown function UPF0118 [Pseudoxanthomonas suwonensis
           11-1]
          Length = 398

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 125/348 (35%), Gaps = 8/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++  + L  +  L     P +   ++G+   P+      +   S      +   
Sbjct: 16  QQLKWIVLALVALWMVGLLAPILTPFVLGALLGWMGDPLVDRLE-RAGRSRNVAVTLVFG 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L ++ LL L      +++ LV  +    +                   EL      
Sbjct: 75  LMTLLLVLALLILVPMLERQVRTLVETLPEYREW---FVDTAVPWLEARTGLELSVWLDP 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +             +  + SR G   + + ++++ + I  F+F RD   + +++
Sbjct: 132 ERAVNWVREHWQQAGGVATSVAGYISRSGFAMVAWVVNLVLLPILTFYFLRDWDLLVERV 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L          +++R    V+ +   G  ++ I  G +      L+G+   + +G+I 
Sbjct: 192 AALVPRDHLDTVTRLARESNDVLGAFLRGQFVVMIALGAIYAIGLQLSGLKLGLLIGLIA 251

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP     +   +++   +      +      + +   +   +    L P +VG  
Sbjct: 252 GLISFIPYLGATTGIVLAVVAALVQAQGFDTRLLVLVGVVFTVGQLLESYVLTPRIVGDK 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           I L  +   F ++ G +  G LG+ I     A+I V+ + +    +++
Sbjct: 312 IGLHPVAVIFAVMAGGQLFGFLGMLIALPAAAVINVLLRYAAERYRQS 359


>gi|309777687|ref|ZP_07672637.1| putative membrane protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914591|gb|EFP60381.1| putative membrane protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 395

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 111/341 (32%), Gaps = 8/341 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCLF 74
           +  ++  + G   P +  +++ F        F+ K             AV + + +  + 
Sbjct: 37  VFDTITMVIGMLRPFIYGIMMAFVFNIPMKFFLKKLPDSLGRWKKALAAVCSFLIIFGIL 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  +    +  +  L + +    +        ++ +       +   + +    +  
Sbjct: 97  AFIIRIVMPQVIDSIASLANSLPGYIEDAQKT---ITAMIEKQQIPDEVLRQVDTYSAQL 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   L  NGI  +   AS F     +  ++++  +       +      + L +    
Sbjct: 154 QDTLVNLLKNGIPHLLTMASGFASSLANVFMALVIAVYLTVSKDKLLEQSHRFLYAFTSQ 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +++R+      +   G  + A+  G++      + G P    LGVI     +I
Sbjct: 214 RVNHNVLRVARLTNTTFSAFITGQLVEAVIIGVLCYIGCLVLGFPYAPILGVIIGCTNII 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I    +   L+   N        ++G          + P +VG  + L  L   F
Sbjct: 274 PIFGAIFGVVLCALLVAFVNPLQGVFFVIFGICLQQFESNLIYPRVVGTSVGLSGLWVLF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +  G    G  G+ +G    ++I  + +E +      K++
Sbjct: 334 AITVGGGLFGFAGMLLGLPTFSVIYSLLREEMNRRVRMKQE 374


>gi|315149437|gb|EFT93453.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
          Length = 404

 Score =  142 bits (358), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 55  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 113

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 114 LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 167

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 168 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRK 227

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 228 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVHYAFLFGVIAGFTNLIPYL 287

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      A    L   +   +    + P ++G  +K+  L     L+
Sbjct: 288 GPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 347

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG+F+G    A+   I    I  +K  + +  +N
Sbjct: 348 VAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 389


>gi|296454763|ref|YP_003661906.1| hypothetical protein BLJ_1638 [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296184194|gb|ADH01076.1| protein of unknown function UPF0118 [Bifidobacterium longum subsp.
           longum JDM301]
          Length = 563

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 109/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAIIVFMFCWRSWGDISYLVFDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +              +            T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYGQIREFVDQHA------------T 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+   +       +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINAICTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLSVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|108757825|ref|YP_632271.1| hypothetical protein MXAN_4093 [Myxococcus xanthus DK 1622]
 gi|108461705|gb|ABF86890.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 385

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 136/350 (38%), Gaps = 10/350 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++      +   +    +++    L  F  PVL    +     P+  S   K     +
Sbjct: 1   MADSRRWSNFVFAGLFALALILFSRILLPFLMPVLLGGFLVVLFMPVQDSLCQKLGGRKS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A ++TV+V  L + PL  + +    E+ + V +  +  +       +L+ +P G+   
Sbjct: 61  LSAGVSTVTVFVLILAPLALVGWMVAREVFQFVGQAQVLLEQQHLRHPFLASLPLGLE-- 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                       +            +               D  +++  M +A+++F+ D
Sbjct: 119 ------RYLRLGVDSAETERALLAAMTGGASLLRDVAAAGTDLVINLFLMSVAMYYFFLD 172

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +  ++  L   L   Y++  +R    V  +   G T+ A+ +G V      +AGVP 
Sbjct: 173 GRRLVAEVMRLIP-LDRRYFEAFAREFTDVAYAIIYGNTVTALIQGAVGFVGLLIAGVPH 231

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G    ++A++P G   + +  + + L+    +     L  WGA  +  +D  +RP 
Sbjct: 232 AGVWGAAMVLVALVPVGGTALVWGPIGVVLIAANQVSEGVFLLAWGAFLVGSIDNVIRPR 291

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L G  + L  L  F  + GG+   G++GL +GP++ ++   + +      
Sbjct: 292 LCGSRMALHPLLVFLSMFGGLAVFGMMGLLVGPLIASIFMAMVRIYRRDF 341


>gi|56461267|ref|YP_156548.1| PerM family permease [Idiomarina loihiensis L2TR]
 gi|56180277|gb|AAV82999.1| Predicted permease PerM family [Idiomarina loihiensis L2TR]
          Length = 348

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 140/350 (40%), Gaps = 7/350 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MRE++   +      ++ + +   + L  F+  +  A ++    +P+         +   
Sbjct: 1   MRESL--ERRSFLLTLILVSIAFAWVLIPFWGAIFWACVVTVIFYPLQQKLKKTFGDKPN 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  +  + + ++P L + Y  + E      ++     +   +   +          
Sbjct: 59  RAALVTLLIALVIVVIPALGISYSFVQEGVSFYQRLDEGKINPGKLFDDIQKAFP---VI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      S      +    +G  F+   A   G     + +S+  MI   FF  RD
Sbjct: 116 SDLLAQFDIKASDVREKISSGAVSGSKFLAEEALSIGQNTFSFIISLSLMIYLTFFLLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   L      L     +K+     +V R+T  G  ++AI +G + G  + L G+P 
Sbjct: 176 GHLLIDLLVKALP-LGDERERKLFTKFAEVTRATVKGNIVVAIVQGTLGGIIFALLGIPG 234

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+ A +++IP     + +  VSIYL   GN    T L  +GAI + + D  LRP 
Sbjct: 235 ALLWGVVMAFLSLIPAVGASLVWLPVSIYLYATGNWIAGTILVAYGAIVIGLADNVLRPV 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           LVG   KLP     F  +GG+   G+ G  +GP++ AL  V W   +   
Sbjct: 295 LVGRDTKLPDYLVLFSTLGGLSLFGITGFVLGPLVAALFLVFWDIFMNEF 344


>gi|269928592|ref|YP_003320913.1| hypothetical protein Sthe_2677 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787949|gb|ACZ40091.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 468

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 113/337 (33%), Gaps = 17/337 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     P + A +  +   P+ +               +  V +  +  V  + +     
Sbjct: 31  VAHILPPFVWAAVTAYLLHPVVNRVQRGLRIPRPVAIAMVFVLIAGILGVVGVRVVPTLY 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++ L++ +                I  G          ++   +        +  +  
Sbjct: 91  EQLRSLIASLPSLIDTARQELVRNERISIGG---------VTIDTAAINAQIEEVSKDVA 141

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
               R A    +  + + + ++  ++A ++F   G  + Q+L +L        ++++S  
Sbjct: 142 ARFSREAPSLVLQTVGFLIHLLVYLLATYYFLLQGSRLVQRLSNLLPPRHHQTFERVSGQ 201

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V     +      I+     +    A  +  V   +AL + T  + +IP   P +   ++
Sbjct: 202 VNATFGAYIRAQVILFAIMSVATFIALSILKVQYALALAIATGALELIPIIGPWTAGGIA 261

Query: 267 IYLLIKGNIFN--------ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           + + +              A  + L       + D  + P LVG  ++L  L   FG++ 
Sbjct: 262 VTVALSQGSTPFGWTPVQLAAVVGLTYLALRLMEDHFVIPQLVGRIVRLHPLMVIFGVLA 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G    G LGL +   L+A   +I    +  ++    +
Sbjct: 322 GASIGGALGLVLAVPLLAASKLIVLAVLEELRHPPAR 358


>gi|326773454|ref|ZP_08232737.1| permease [Actinomyces viscosus C505]
 gi|326636684|gb|EGE37587.1| permease [Actinomyces viscosus C505]
          Length = 485

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 99/325 (30%), Gaps = 11/325 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +   +   F  +  AL+      P+ + F             +A ++ +      + +
Sbjct: 151 FYATSQVIPVFIGLFMALVFTSILQPMVNLFAK--IMPRYPATFLALLTTIGAIAGLVTY 208

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +      +   L S+        +                 L  + + H   L +     
Sbjct: 209 VVTSVTSQWSSLASQFGDGLNTIMDFLE--------NGPLHLTQQQIYHQLQLWLRQGQH 260

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +    +           +D    +   +    FF   G  + +   +          
Sbjct: 261 YLQSNAPSLASELLSNASAVIDVLTVLALALFVTIFFLASGGRMWRWFLNELPATMREST 320

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-P 259
            + +            G  ++A+ + ++ G    L G+P    L V+  I A IP    P
Sbjct: 321 HRAAGAGWYTFAGYARGTVLVALTDAIMAGIFLQLVGIPLAAPLAVLVFIGAFIPIIGAP 380

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++     +  L  G       + +  A    I    L+P ++G  + L  +    G+  G
Sbjct: 381 LAMLVAMVVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIMGRQVSLHPVVVIIGVALG 440

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               GLLG  +   L++++  ++ E
Sbjct: 441 TYAAGLLGAIVAVPLISVLWSVYSE 465


>gi|85710071|ref|ZP_01041136.1| membrane protein, putative [Erythrobacter sp. NAP1]
 gi|85688781|gb|EAQ28785.1| membrane protein, putative [Erythrobacter sp. NAP1]
          Length = 400

 Score =  142 bits (358), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/347 (20%), Positives = 139/347 (40%), Gaps = 3/347 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++  + ++ ++    F  PV+ A +      P+Y   ++K        A ++ + + 
Sbjct: 28  FLLILAVVSILFVWVTWPFVGPVMWAALAAIMFQPLYKWSLTKTRGRRNIAASLSLLIIF 87

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++P L++    + E   +++ +             +  I        +  ++     
Sbjct: 88  VAVLLPALWIGSLVLDEAVGVINALQANPIDIAQTVNSIFSILPDS-LQRMALENGWTNV 146

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S+       L       I + A   G   L + LS    +  LFF  RDG  I + +   
Sbjct: 147 SVMQDRLESLLGESAGLIAQSAVSIGSGALGFFLSFGIGLYVLFFLLRDGSRIGETILHS 206

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +++     ++R+   G  ++ + +G + G    LAGVPS + LGV+ AI+
Sbjct: 207 APIE-REIADRLADRFLGIVRAVIKGSGVVGLVQGTLGGIMLALAGVPSALLLGVLMAIL 265

Query: 252 AMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A+IP     + +    I+L+I G ++    +   G I +  VD  LRP LVG    +P  
Sbjct: 266 ALIPAVGTALVWAPAGIWLIIAGEVWTGAFVLAAGTIVIASVDNVLRPILVGRDTGIPDW 325

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                 +GG+   G  G+ +GP++  L    W        E++E I+
Sbjct: 326 IVLVTTLGGISLAGFSGIVLGPLVAGLFLASWSILQEQRAEDEEAIA 372


>gi|289423261|ref|ZP_06425072.1| putative permease [Peptostreptococcus anaerobius 653-L]
 gi|289156361|gb|EFD05015.1| putative permease [Peptostreptococcus anaerobius 653-L]
          Length = 424

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/374 (12%), Positives = 111/374 (29%), Gaps = 21/374 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK- 55
           R + +    ++ ++ + I+  +     L  L    +P++   +I F    I +    K  
Sbjct: 5   RISTIKTIFLIAFLALVILNFTNILNNLGILLEVLSPIMMGCVIAFVLNTIVTPIEDKLL 64

Query: 56  ---------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
                    +       V+A +    L  + +  +       +   V ++    +     
Sbjct: 65  SRIDNKFINKIKRMVSIVLALLISFSLVFLIMKLIVPEVKNSLATFVVQLPDIYEIVKKE 124

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                     + +++      +              +     I    +    +     ++
Sbjct: 125 I------IKIIPSAQENLSSTNLNVQEIANKGFETVSAWAGGIFSLVNSVFGVLASVVMA 178

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
            I  I  +           +                   +     ++ F G  I AI  G
Sbjct: 179 SILAIYIVSSKETLTRQFDKLFKKFIPERIIKPMYYFFDVSNSTFKAFFTGQFIEAIILG 238

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++         +P    +G    + A++P             +L+  + F A    ++  
Sbjct: 239 VLCTLGMAALRLPYASMVGSFVGLTALVPMVGAYLGCIFGFLMLLPVSPFKAMVFIIFLL 298

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I    + P +VG  + LP +     ++ G     ++G+F G  + A+I  I K+ +
Sbjct: 299 VLQQIEGNVIYPRVVGSSVGLPGMWVLVSVIVGGGLFNMVGIFFGVPVTAVIYKILKDQV 358

Query: 347 MAIKENKEKISSNF 360
            +          NF
Sbjct: 359 NSGSTKIADRVENF 372


>gi|146329499|ref|YP_001209560.1| hypothetical protein DNO_0651 [Dichelobacter nodosus VCS1703A]
 gi|146232969|gb|ABQ13947.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 353

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 109/337 (32%), Gaps = 7/337 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +     ++  +    LY L     P L A ++ +   P+     +  +    +  V   
Sbjct: 2   QERFFWLIVFVMSGFLLYLLSPVLTPFLFAAVLAYLGDPLVDRIEA-CKIPRLWAVVTLF 60

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++  F V +L +      ++ ++  +V     H     + +                 
Sbjct: 61  ALLLIGFAVIVLVIIPMIDQQVDQISGRVPNYLNHV----QKVMTPTIQKLFDISPETIN 116

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +      +       +  ++ +     +     +   + +  + +  F+  RD   +  +
Sbjct: 117 ADNAQKFLQDNIKSASAVLNGLFSSLKKPARAVITGVMYLFLIPVVTFYLLRDWDKLLAK 176

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L    +      ++R   +V+     G  I+    G++      + G+   + +G  
Sbjct: 177 FQALLPRKYHDDICLLARRSDEVLGGFLRGQFIVMCCLGIIYAIGLSIVGLDLGILIGFF 236

Query: 248 TAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + +++ +P    +     +  + L+   +  +   +         +    L P  VG   
Sbjct: 237 SGLVSFVPYLGLVVGMSISALVALIQFQDWLHLFAIAAVFICGQMMEGMFLTPKFVGDRT 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L  +   F ++ G +  G +G+ +     A+I V  
Sbjct: 297 GLHPVAVLFAVLTGGQFFGFMGVLLALPCAAVINVFL 333


>gi|39997096|ref|NP_953047.1| transporter [Geobacter sulfurreducens PCA]
 gi|39983986|gb|AAR35374.1| transporter, putative [Geobacter sulfurreducens PCA]
 gi|298506109|gb|ADI84832.1| membrane protein UPF0118 [Geobacter sulfurreducens KN400]
          Length = 370

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 110/331 (33%), Gaps = 4/331 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L   F PVL ALI+ +   P+ +   +++        ++    ++ +    + F    
Sbjct: 37  WSLGSTFLPVLLALILAYVLNPLVTWLEARRV-PRVAAVLLVMALIVVVTAGAVTFFAVS 95

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E+  +   +         +    +     +   +     +         +   L   
Sbjct: 96  IQKEVARVEINLPAYATRLYDLIPGQAKAYLEIETPDKLYARIDSLVDELRGASFDLVKG 155

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  + + A    + FL          + L++F  D   +   + +L           + 
Sbjct: 156 ALG-VVQRAFSSTLGFLLTVAGYFITPVYLYYFLADLPRLRDGIMALVPGRARDRAAMLG 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  V+     G   +     ++      + G+   + +G ++  + +IP    +    
Sbjct: 215 SEIDGVLSGFVRGQLAVCAILAVLYSIGLVMIGIDLAIVIGSLSGFLFIIPYVGTVFGIV 274

Query: 265 VSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           VS+ +  L   ++ +      W AI   I    + P +VG  + L  +     L  G + 
Sbjct: 275 VSMIMAFLKFHDMLHPLLCLGWFAIVQAIEGALITPAVVGNTVGLHPVVAILALFIGGQW 334

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+ G+ +   + A+I V+ +  +   +   
Sbjct: 335 FGIFGMLLAVPVAAVIKVLLRHGVEWYRATP 365


>gi|315150243|gb|EFT94259.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0012]
          Length = 394

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 108/337 (32%), Gaps = 2/337 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI             PVL  +I+ +   P+      K      +   I  V ++ L +
Sbjct: 37  VSFIFKPIFVIFSAVLGPVLFGIILFYLLNPMVKRLEKK--IPRVWAIAILYVLIIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L LF     + +EL+ +     +  +   +            E   + ++       
Sbjct: 95  LAGLQLFPIIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S      + +    +             L++    I  FF  +D     + +  +    
Sbjct: 155 NSFKDFAGDYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + + S+I    I     G  I ++  G++    + L G+     L +   I+ +IP
Sbjct: 215 FRPDFDEYSQIANIQIGDYLKGQVIASLVLGIMYWPTFLLIGLQFGSILALAAGILCIIP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F      +       I    + P ++G  +K+  +     
Sbjct: 275 YIGPFIAFIPGLIIAFQDSTFMVIKFVIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+      GL+G+  G  +  L+ V         K+ 
Sbjct: 335 LLVMGELFGLMGVIFGIPMYCLVKVTVIYLFRKFKQR 371


>gi|326381378|ref|ZP_08203072.1| hypothetical protein SCNU_00465 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199625|gb|EGD56805.1| hypothetical protein SCNU_00465 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 435

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 107/341 (31%), Gaps = 14/341 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++    +F +   L        PV+  +++    WP     +SK+         +  +
Sbjct: 68  QMLLVMAFLFALFWVLSKFWVILLPVILGIVVATVLWPPVRWLLSKRV-PPAAATFVVLL 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + +    +  +    + +  +L  + V   +      +                    
Sbjct: 127 AAIAVIGGVVALIVPSVVDQAPQLADRAVDGVKRVQDWIQ------------GPPLNVGD 174

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T         I         +     +++   ++ LFFF +DG      L
Sbjct: 175 DQLTSLVNEITSKLQKSASTIATGVFNGVGVATSALITLFTTVVLLFFFLKDGPKFLPWL 234

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D         +  +I R + + +        I++  +  ++G    +  VP    L VIT
Sbjct: 235 DRTMGKEGAVHVSEILRRMWETLGGFIRTQAIVSFVDAALIGIGLLILDVPLAGVLIVIT 294

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP     ++     +  L+   + +A  +         +    L P+L    + L
Sbjct: 295 FMGGFIPIVGAFVAGALAVLIALVSNGLTSALIVLGIILAVQQLEGNVLSPWLQAKSMNL 354

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             +     +  G    G+ G F+     + +AV  +  +  
Sbjct: 355 HAVIVLLSVTLGGSLFGITGAFLAVPAASCLAVALRYILEQ 395


>gi|254563547|ref|YP_003070642.1| membrane transport protein [Methylobacterium extorquens DM4]
 gi|254270825|emb|CAX26830.1| putative membrane transport protein [Methylobacterium extorquens
           DM4]
          Length = 652

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 100/368 (27%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++  ++        L  +      E  +L + +   +         L        + 
Sbjct: 71  AVLLVVVLAF-----GLLGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGID----------------------FIPRFASRFGM 158
                                                             +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTESETNAPLGTAERPMQVEIHAPRTGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|222149993|ref|YP_002550950.1| permease [Agrobacterium vitis S4]
 gi|221736975|gb|ACM37938.1| permease [Agrobacterium vitis S4]
          Length = 349

 Score =  142 bits (358), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 163/349 (46%), Positives = 218/349 (62%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M+ P    RW+++ +++ S YF  GF  P+L+A++IGF SWPIY   +S    + T  A 
Sbjct: 1   MVAPTSAARWLLLAVLMASAYFFYGFIVPLLAAMVIGFASWPIYRRILSLARGNRTIGAT 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA + V+   +VP+     Y + E+K      + AN+ G PVP+WL  +P          
Sbjct: 61  IAIILVVSFIVVPISLAGIYAVDEVKSWGVWALRANEVGAPVPQWLIQVPLAGAWLSEHW 120

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                           +    I  I R     G       L+++FM+IALFF YRDG  I
Sbjct: 121 DQYVGHPGALGELVQLISGANIGTIYRGLLVVGSSAFHSFLTLLFMLIALFFVYRDGERI 180

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             Q+D +GE + P  W+++SR+VP  I ST  GMTIIA+GEG+VLG AYW+AGVPS V L
Sbjct: 181 VAQVDIVGERILPGRWERVSRLVPLTISSTVTGMTIIAVGEGIVLGLAYWIAGVPSPVTL 240

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+IT  MA+IPGGAP+SFT VSIYL+  G+      L  WG +ELFIVDKTLRP LVGGP
Sbjct: 241 GIITGFMALIPGGAPLSFTLVSIYLVASGSTIAGVGLLAWGTVELFIVDKTLRPRLVGGP 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           IKLPFLPTFFGL+GGV+TMG+LGLF+GPVLMA++  IW+E ++  K+ +
Sbjct: 301 IKLPFLPTFFGLIGGVKTMGMLGLFVGPVLMAILVAIWREWLLEAKQPE 349


>gi|170736099|ref|YP_001777359.1| hypothetical protein Bcenmc03_3717 [Burkholderia cenocepacia MC0-3]
 gi|169818287|gb|ACA92869.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 350

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 136/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A++   
Sbjct: 8   QKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVTMS 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +       +         + L    L+
Sbjct: 68  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLLQKYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NIPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 187 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 350


>gi|329578114|gb|EGG59526.1| hypothetical protein HMPREF9520_00101 [Enterococcus faecalis
           TX1467]
          Length = 394

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F            ++ I M   LF+  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVAT----IFVATITMPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|315162842|gb|EFU06859.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
          Length = 394

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 105/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   L +  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVATIFVAIIT----MPFILSYLLKDGKNLAPYLMKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|288940576|ref|YP_003442816.1| hypothetical protein Alvin_0838 [Allochromatium vinosum DSM 180]
 gi|288895948|gb|ADC61784.1| protein of unknown function UPF0118 [Allochromatium vinosum DSM
           180]
          Length = 401

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 152/353 (43%), Gaps = 6/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  M + I  + L  ++ F   +L A I    + P+Y    ++   S +  +++  
Sbjct: 7   TKATVILMTLAISALFLAMIQPFLMTLLLAGIFSALARPLYLRLQARLGCSESIASLLTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  + ++P +FL    + +  ++   + +  +  I  P         +   +   +  
Sbjct: 67  LLIAVMVLIPSVFLITILIGQALDVSELISIWVRGVIEDPTDFLAALQHLPFYDEVIE-- 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              + L +       T     +  + S   +  +++      ++ +LFF   DG     +
Sbjct: 125 --HRGLILEQAGQAATLVSKLLVDWVSSVTLKTVNFVFLTFVLLYSLFFLLMDGPKFILK 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L            + +      V R+T  G  +I + +G + G A+ +AG+ + V  G +
Sbjct: 183 LLYYLPLHTRDE-RLMLDKFTSVTRATLKGSFLIGVLQGGLAGIAFAVAGIDNAVFWGTL 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A++++IP  GA + +    I L+ +G +  A  L L+  + +  +D  LRP LVG   +
Sbjct: 242 MALLSIIPNVGAALVWIPAVIILIAQGAVLTAILLALFCGLIVGSLDNVLRPILVGKDTR 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +  L  FF  +GG+   GL GLFIGPV+ +L+  IW+   +   +   ++  +
Sbjct: 302 MHELMIFFSTLGGLLMFGLPGLFIGPVIASLLISIWEIYGVEFADVLPEVDES 354


>gi|304391982|ref|ZP_07373924.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
 gi|303296211|gb|EFL90569.1| ATP/GTP-binding protein [Ahrensia sp. R2A130]
          Length = 369

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 111/349 (31%), Gaps = 9/349 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q         + ++ L   +    P ++ + + +   P+      K   S      I  
Sbjct: 13  RQLFFWLGAFVVTVLFLIVFRSILLPFIAGMALAYMLDPVADKLE-KLGASRLLATTIIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + +F + L+ L      +   L+ ++         +   +          E      
Sbjct: 72  FVFIIMFALALILLVPVLSNQFSGLIQRMPSYVTSLQSLIASVEKPWLRDLVGESADNIR 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L               +     + G   +D    ++   I  F+   D   ++ +
Sbjct: 132 ENLDGLLQQ-----GAGWASTVLGSIWQSGKALVDVLSLLVITPIVAFYLLLDWDRMTAK 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++S            I+  +   I     G   + +  G        LAG+   + +G+I
Sbjct: 187 VESWLPRQHKGELTGIADDMNAAIAGFVRGQGTVCLILGTFYALGLTLAGLNFGLLIGMI 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL---FLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP    I    ++I + +     +   +       A+  F     L+P LVG  
Sbjct: 247 AGLISFIPFVGSIIGAILAIGVALVQFWPDYIWIGVIAGIFAVGQFFEGNFLQPKLVGES 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + L  +   F L      MG  GL I   + A I V+ + ++    +++
Sbjct: 307 VGLHPVWLMFSLSAFGALMGFTGLLIAVPVAAAIGVLVRYTLGRYLQSQ 355


>gi|320008172|gb|ADW03022.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 377

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 104/338 (30%), Gaps = 14/338 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +   + Y L G    +L A  +     P  S    +          +  ++V+   I  +
Sbjct: 21  LGSWAFYQLIGLLTNILIAFFLALAMEPAVSRMAGR-GIRRGLATFLVFIAVLVAAIGFV 79

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L      ++ ++V +        I             W ++ +   LS  +    L  
Sbjct: 80  VLLGSMLAGQIVDMVEEFPKYLDSVIN------------WVNQTFHTELSRVEVQDSLLH 127

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           +      +              L     ++ + +  F+F  DG  + + L S+      A
Sbjct: 128 SDWLQRYVQNSATGVLDVSTTVLGGLFRLLMIFLFSFYFAADGPRLRRALCSVLPPSRQA 187

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGG 257
              +   I             ++A+  G+       +  VP   AL V   +++  IP  
Sbjct: 188 EVLRAWEIAVDKTGGYIYSRGLMALISGVAHYVLLVVLDVPYAPALAVWVGLVSQFIPTI 247

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                 A+ + +    + + A  +  +  +     +  L+P L    + +     F  +V
Sbjct: 248 GTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYALQPKLTSKTVDIHPAVAFGSVV 307

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G   MG +G  I    +A +       +       + 
Sbjct: 308 AGTALMGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|313113534|ref|ZP_07799123.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624261|gb|EFQ07627.1| conserved hypothetical protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 425

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 109/348 (31%), Gaps = 13/348 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFI---------SKKEESSTFLAVIATVSVMCL 73
           ++  L G   P +   +I +   P+ ++                 +     +  +  + L
Sbjct: 45  AISTLTGILMPFIYGAVIAYLLKPVCNTIESFLRRFIPEKMHGLVNVLSITLTILFGLLL 104

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                + +    +  +  L           +     +  I       ++     +   + 
Sbjct: 105 IYALCMMIIPQLITSVTTLYYTAQRNLAKFVQWANHVEFIENNQQIMDMLNSAYATISTN 164

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  I   A+   +  +    ++I  II   +         QQ   +  
Sbjct: 165 IDDLIKTRLLPSMQNIVSGAAAGVLNVVTMAKNLIIGIIVAVYMLASRKRFVQQAKLVLY 224

Query: 194 HLFPAYWKKISRI----VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +F   W ++ +       K+      G  + +   G++      +   PS + + VI  
Sbjct: 225 SIFKPRWAELIKEEVKYADKMFGGFINGKIMDSAIIGVLCYIGCLIFKFPSALLVSVIIG 284

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP   P      +  L++  N   A    L+  +   +    + P ++G    L  
Sbjct: 285 VTNVIPFFGPFIGAVPATLLILIQNPIKALWFVLFVLVLQQLDGNVIGPKILGNTTGLSS 344

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               F ++      G +G+ +G  L A+I  + K+ ++   +  ++I 
Sbjct: 345 FWVLFAILLFGGLWGFVGMIVGVPLFAVIYDVIKKLVVHGLKRNKEID 392


>gi|197335578|ref|YP_002156935.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
 gi|197317068|gb|ACH66515.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
          Length = 361

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 140/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +  P++ A I+     P+++    +   S    A
Sbjct: 6   KLNSSHWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASEL 122
           +++ +++  +  +PL F+F   + +               GI        +   +     
Sbjct: 66  ILSCMALTFIIAIPLFFVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAKALSFINK 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +   +        L +     I   +++      +  ++   M+  LFF  RD  
Sbjct: 126 YLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVGDVTNVLMNFFLMLFVLFFLLRDQD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I      +   L  +   ++   + +V +S  LG  + AI +G+  G A WLAG P   
Sbjct: 186 KIISAFRHVLP-LSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYLL+      A  L  WG + +  +D  +RP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ AL  V++       K   ++   N
Sbjct: 305 GNSGMNTLLIFFSLLGGIQLYGLIGLIYGPIIFALTLVLFNMYETEFKTFLDQQDKN 361


>gi|59712743|ref|YP_205519.1| permease [Vibrio fischeri ES114]
 gi|59480844|gb|AAW86631.1| predicted permease [Vibrio fischeri ES114]
          Length = 361

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 140/357 (39%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +  P++ A I+     P+++    +   S    A
Sbjct: 6   KLNSSHWVLIAALLAAGYACFLLIEPYLNPIILAFIMSLLFAPLHNKISDRLPNSPNSAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASEL 122
           +++ +++  +  +PL F+F   + +               GI        +   +     
Sbjct: 66  ILSCMALTFIIAIPLFFVFIAIVQQGATFSKDAYHWVIDGGIQTLFQHPFVAKVLSFINK 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +   +        L +     I   +++      +  ++   M+  LFF  RD  
Sbjct: 126 YLPFDAIDPAEVTQKVAQLASQIGTRIVGMSAQIVGDVTNVLMNFFLMLFVLFFLLRDQD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I      +   L  +   ++   + +V +S  LG  + AI +G+  G A WLAG P   
Sbjct: 186 KIISAFRHVLP-LSRSQEDRLLDEIEQVSKSAVLGSFLTAIAQGIAGGFAMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYLL+      A  L  WG + +  +D  +RP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWVPATIYLLLTNQWEWAIFLTAWGVLVVGSIDNIVRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG++  GL+GL  GP++ AL  V++       K   ++   N
Sbjct: 305 GNSGMNTLLIFFSLLGGIQLYGLIGLIYGPIIFALTLVLFNMYETEFKSFLDQQDKN 361


>gi|29375032|ref|NP_814185.1| hypothetical protein EF0396 [Enterococcus faecalis V583]
 gi|227553764|ref|ZP_03983813.1| permease [Enterococcus faecalis HH22]
 gi|229547716|ref|ZP_04436441.1| permease [Enterococcus faecalis TX1322]
 gi|255970953|ref|ZP_05421539.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255973465|ref|ZP_05424051.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256617319|ref|ZP_05474165.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256852374|ref|ZP_05557750.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957715|ref|ZP_05561886.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256963168|ref|ZP_05567339.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257083480|ref|ZP_05577841.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257085756|ref|ZP_05580117.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257088896|ref|ZP_05583257.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415129|ref|ZP_05592123.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257418175|ref|ZP_05595169.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257420681|ref|ZP_05597671.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294780634|ref|ZP_06745995.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1]
 gi|300862228|ref|ZP_07108308.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TUSoD
           Ef11]
 gi|307270055|ref|ZP_07551377.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248]
 gi|307272207|ref|ZP_07553467.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0855]
 gi|307275216|ref|ZP_07556362.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2134]
 gi|307282402|ref|ZP_07562609.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0860]
 gi|307290690|ref|ZP_07570596.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0411]
 gi|312900525|ref|ZP_07759825.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0470]
 gi|312904906|ref|ZP_07764045.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635]
 gi|312952033|ref|ZP_07770917.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0102]
 gi|29342491|gb|AAO80256.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227177146|gb|EEI58118.1| permease [Enterococcus faecalis HH22]
 gi|229307208|gb|EEN73195.1| permease [Enterococcus faecalis TX1322]
 gi|255961971|gb|EET94447.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255966337|gb|EET96959.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256596846|gb|EEU16022.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256712228|gb|EEU27260.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256948211|gb|EEU64843.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256953664|gb|EEU70296.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256991510|gb|EEU78812.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256993786|gb|EEU81088.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256997708|gb|EEU84228.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257156957|gb|EEU86917.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257160003|gb|EEU89963.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162505|gb|EEU92465.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294452244|gb|EFG20685.1| putative ATP synthase F0, A subunit [Enterococcus faecalis PC1.1]
 gi|295114222|emb|CBL32859.1| Predicted permease [Enterococcus sp. 7L76]
 gi|300848753|gb|EFK76510.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TUSoD
           Ef11]
 gi|306498242|gb|EFM67753.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0411]
 gi|306503765|gb|EFM72992.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0860]
 gi|306508084|gb|EFM77208.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2134]
 gi|306511096|gb|EFM80106.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0855]
 gi|306513631|gb|EFM82241.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4248]
 gi|310630033|gb|EFQ13316.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0102]
 gi|310631790|gb|EFQ15073.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0635]
 gi|311292350|gb|EFQ70906.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0470]
 gi|315026218|gb|EFT38150.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2137]
 gi|315028476|gb|EFT40408.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4000]
 gi|315032188|gb|EFT44120.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0017]
 gi|315035401|gb|EFT47333.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0027]
 gi|315144063|gb|EFT88079.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX2141]
 gi|315146781|gb|EFT90797.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX4244]
 gi|315153792|gb|EFT97808.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0031]
 gi|315154921|gb|EFT98937.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0043]
 gi|315158896|gb|EFU02913.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0312]
 gi|315161137|gb|EFU05154.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0645]
 gi|315167780|gb|EFU11797.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1341]
 gi|315170577|gb|EFU14594.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1342]
 gi|315574799|gb|EFU86990.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0309B]
 gi|315576390|gb|EFU88581.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0630]
 gi|315582246|gb|EFU94437.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0309A]
 gi|327534136|gb|AEA92970.1| hypothetical protein OG1RF_10283 [Enterococcus faecalis OG1RF]
 gi|329574935|gb|EGG56492.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1467]
          Length = 394

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 109/337 (32%), Gaps = 2/337 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI             PVL  +I+ +   P+      K      +   I  V ++ L +
Sbjct: 37  VSFIFKPIFVIFSAVLGPVLFGIILFYLLNPMVKRLEKK--IPRVWAIAILYVLIIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L LF     + +EL+ +     +  +   +            E   + ++       
Sbjct: 95  LAGLQLFPIIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S      + +    +             L++    I  FF  +D     + +  +    
Sbjct: 155 NSFKDFAGDYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + + S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP
Sbjct: 215 FRPDFDEYSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F      +       I    + P ++G  +K+  +     
Sbjct: 275 YIGPFIAFIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+      GL+G+  G  +  L+ V         K+ 
Sbjct: 335 LLVMGELFGLMGVIFGIPMYCLVKVTVIYLFRKFKQR 371


>gi|330447452|ref|ZP_08311101.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491643|dbj|GAA05598.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 361

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 143/353 (40%), Gaps = 2/353 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   +      S   ++ +  P++ A II     P++   ++     +   A+++ 
Sbjct: 10  RHWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSC 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPGGMWASELWTKH 126
             +  + ++PLL +F   + +   +  +       G P   +        +   + ++  
Sbjct: 70  FILTVIIVIPLLIVFSSIVHQGTTVSKESYEWITSGGPKELFAHPYAQKALGFIDKYSPF 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +    + I       +         ++R         ++ + M+  LFF  RD   +  
Sbjct: 130 HNFDPQVIIQKIATTASQVGSQALNISARILGDATSILVNFMMMLFVLFFLLRDNDKMIA 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +   +I   V +V +S  LG  + A+ +G+  G A WL G P      +
Sbjct: 190 AIRHVIP-LSRSQEDEIMNEVEQVAKSAVLGSFLTAVAQGIAGGFAMWLCGFPGLFWGSM 248

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +     +   G  + +   S+YLL+ G    A  L  WG I +  +D  +RP L+ G   
Sbjct: 249 MAFASLIPVVGTALIWLPASLYLLLIGQWEWALFLAGWGVIVVGSIDNVVRPLLMQGSSS 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +  L  FF ++GG++  GL+G+  GP++  +  V++K   +  K+  E+   N
Sbjct: 309 MNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMYEVEFKDFLEQQDKN 361


>gi|289550856|ref|YP_003471760.1| UPF0118 membrane protein YrrI [Staphylococcus lugdunensis HKU09-01]
 gi|289180388|gb|ADC87633.1| UPF0118 membrane protein YrrI [Staphylococcus lugdunensis HKU09-01]
          Length = 406

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 116/330 (35%), Gaps = 5/330 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +       AP++ +LI+ +   PI +              VI  ++++ L  + +  L 
Sbjct: 59  FIIVFNTIVAPIILSLILFYLINPIINLMERY-NIPRLLGIVIVFLAIVGLIALIVNLLI 117

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  L+                ++         +    +L             + 
Sbjct: 118 PVIGSQVTRLIHNAPAYVTKFNDTLDKVTHFSFLSSFYDQIQTNLDS----LSKKIPSIV 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T+  D        F    ++  + +I     LFF  +DG    +    +    F   +  
Sbjct: 174 TDYFDGFGTKLRTFAEAIVNVGVVLITTPFVLFFMLKDGHKFKEYTTKIMPPKFRKDYHD 233

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   + S   G  I++   G++L   Y + G+   + L  I A+ +++P   P   
Sbjct: 234 LLEKMSVQVGSYIQGQIIVSFCIGILLFIGYTIIGLDYSLILASIAAVTSVVPYLGPTIA 293

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            + +I + +  +      L +   +  FI    + P ++G  +K+  L   F L+     
Sbjct: 294 ISPAIIIALITSPLMLLKLAVVWTLVQFIEGHFISPNIMGKTLKIHPLTIIFILLSAGNL 353

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G++G+ +G    A++ V+     +  K  
Sbjct: 354 LGIVGVILGIPAYAILKVLVSHIFLIFKRR 383


>gi|330684507|gb|EGG96222.1| putative membrane protein [Staphylococcus epidermidis VCU121]
          Length = 406

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
           G++  +++ I++       Y  + F         P++ +LII +   P+ +     +   
Sbjct: 39  GLLALVLLGIVIFIFDKVSYVFEPFIIIFNTIAAPIIVSLIIFYLFNPLVNLMERYR-IP 97

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                +I  ++++ +  + +  L      ++   ++      +        L+       
Sbjct: 98  RLVGIMIIYIAIVGIIALIVNLLIPVIGSQLGSFINNSPQYFKKFTNTINKLTS----NS 153

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++   +        + ++  D      + F     +  + I+     LFF  
Sbjct: 154 IFAGYYSQINDQLNSLTKKIPTMLSDYFDGFGSKLATFAEAVANVGVVIVTTPFVLFFML 213

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG        ++    F   +  +   +   + S   G  I++   G++L   Y + G+
Sbjct: 214 KDGHKFKDFTTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLFIGYSIIGL 273

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P
Sbjct: 274 KYSLILACIAAVTSVVPYLGPTIAISPAIVIAIITSPLMVLKLAIVWTLVQFFEGHFISP 333

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K  
Sbjct: 334 NIMGKTLKIHPLTIIFILLCAGNLLGIVGVILGIPGYAVLKVLVSHVFLLFKRR 387


>gi|227550549|ref|ZP_03980598.1| possible permease [Enterococcus faecium TX1330]
 gi|227180450|gb|EEI61422.1| possible permease [Enterococcus faecium TX1330]
          Length = 362

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/330 (18%), Positives = 114/330 (34%), Gaps = 7/330 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F    FAPVL A  + +   PI    + K +    +   I  + ++   I  LL +    
Sbjct: 30  FFSTLFAPVLIAGFLYYLLNPIVKLLM-KAKIKRIWAVAIVLLLLVAAIIWILLSVIPSL 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++  L S +    +      + ++++P            ++       +S   +    
Sbjct: 89  VQQISSLASSMPDFIKQVESWLKEVAELPVFKEVD------INKYFEQLDISYGTIIQQF 142

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +               + II     LF+  +DG  +   +             ++  
Sbjct: 143 LSGVSNSLGSIVGTIASATVVIITAPFILFYMLKDGEKLVPNIQQFFPEKRRNQIVELLG 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K + +   G  I  +  G      Y + GV      GVI  +  +IP   P    A 
Sbjct: 203 QLNKTLANYISGQAIECLFVGTFTFLGYMIIGVDYAFLFGVIAGLTNLIPYLGPYLGLAP 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  + I  +   A    L   I   +    + P ++G  +K+  L     L+      GL
Sbjct: 263 AFLVTIFNDPIKALLCCLVVLIVQQLDGNIIYPNVIGKSLKIHPLTIIIVLLVAGNIAGL 322

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LG+F+G    A+   I    I  IKE+K+ 
Sbjct: 323 LGIFLGVPFYAICKTIISYIIKIIKEDKQN 352


>gi|83718340|ref|YP_438729.1| hypothetical protein BTH_II0529 [Burkholderia thailandensis E264]
 gi|167577075|ref|ZP_02369949.1| hypothetical protein BthaT_02997 [Burkholderia thailandensis TXDOH]
 gi|167615244|ref|ZP_02383879.1| hypothetical protein BthaB_03087 [Burkholderia thailandensis Bt4]
 gi|257141807|ref|ZP_05590069.1| hypothetical protein BthaA_21719 [Burkholderia thailandensis E264]
 gi|83652165|gb|ABC36229.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 352

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 124/327 (37%), Gaps = 3/327 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  FF  +    I+     P+     ++  +     A++    ++ + I+PL F+   
Sbjct: 24  WILTPFFGAIFWGTILAILFQPVQRWLAARLGKRRNLAALVTLTLIILIVILPLAFVTAT 83

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+     ++     +     +             L    L+    ++          
Sbjct: 84  LVQEIAYAYQQIKTMQPNMTQYFQEFMHALPTSVHRVLHNYGLTDIAGIQKKLTDG-AAA 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F+   A   G     + +S   M+  +FF  RDG  I +++      L   + + + 
Sbjct: 143 ISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALP-LDEEHKQHLL 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
                V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P     + + 
Sbjct: 202 TKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVWV 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + Y  + G ++    L  +    + +VD  LRP LVG   K+P        +GG+   
Sbjct: 262 PAAGYFAVTGQVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALF 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G  IGP++ AL    W       +
Sbjct: 322 GINGFVIGPLVAALFMASWDIFARTEQ 348


>gi|325528611|gb|EGD05706.1| hypothetical protein B1M_05106 [Burkholderia sp. TJI49]
          Length = 350

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 135/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +     L  F   V    I+     P+     ++  +     A++   
Sbjct: 8   QKFFYFLLFAVTVGLCGILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVTMT 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +     + +           L    L+
Sbjct: 68  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFQDIIHALPTSIQHLLQKYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NIPGIQKKLTDGAAQ-ISQFAASQALSIGQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 187 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIQGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWVPAALYFLMTGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     A +  
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQGE 350


>gi|257080808|ref|ZP_05575169.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256988838|gb|EEU76140.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 394

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 108/337 (32%), Gaps = 2/337 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI             PVL  +I+ +   P+      K      +   I  V ++ L +
Sbjct: 37  VSFIFKPIFVIFSAVLGPVLFGIILFYLLNPMVKRLEKK--IPRVWAIAILYVLIIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L LF     + +EL+ +     +  +   +            E   + ++       
Sbjct: 95  LAGLQLFPIIQDQTEELIKQFPSFWKSTLQAVQEFMAKTPFAKDLESANESINQLWGKLA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S      + +    +             L++    I  FF  +D     + +  +    
Sbjct: 155 NSFKDFAGDYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + + S+I    I     G  I ++  G++    + L G+     L +   I+ +IP
Sbjct: 215 FRPDFDEYSQIANIQIGDYLKGQVIASLVLGIMYWPTFLLIGLQFGSILALAAGILCIIP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F      +       I    + P ++G  +K+  +     
Sbjct: 275 YIGPFIAFIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+      GL+G+  G  +  L+ V         K+ 
Sbjct: 335 LLVMGELFGLMGVIFGIPMYCLVKVTVIYLFRKFKQR 371


>gi|323702193|ref|ZP_08113860.1| protein of unknown function UPF0118 [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532880|gb|EGB22752.1| protein of unknown function UPF0118 [Desulfotomaculum nigrificans
           DSM 574]
          Length = 343

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 123/334 (36%), Gaps = 9/334 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +I+ +++  LY ++G F P + A+++ +   P+      +   S     +I  +
Sbjct: 11  RILFIALIIGVVIYFLYLIRGLFLPFILAIVLVYLLNPLVDRMECR-GSSRVAAILILYL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +    L++     + ++++L++ + + +     +   +              + + 
Sbjct: 70  GVIIIVTSLLMYGVPRIINQLEKLLTTIPIYSSQVEDMVNRIQQRFADSTVPPGIQQIVD 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        +     D +    S           +I    +  F+  +D   I  + 
Sbjct: 130 ERINWAEARLLEIVRTAADLLLALVSN--------LFNIALAPVLAFYIMKDLQYIKGRG 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L      +   +++R +  VI +   G  I+     ++   A  L G+      G+I 
Sbjct: 182 ATLIPPRCFSDTCRLAREIDHVIANFVRGHLIVVAIVTVLTSLALALVGLEFAAMFGIIA 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   P       + L +  + + A  + +   I   +    + P ++G  + L 
Sbjct: 242 GLAELIPYFGPFIGAVPPVALALLQSKWLALKVIVALFIVQQLEGNIISPKILGDSVGLH 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L     L+ G +  GL G+ +   L A+  ++ 
Sbjct: 302 PLTIIIALLAGGQLFGLAGMLLAVPLTAIARILV 335


>gi|86747614|ref|YP_484110.1| hypothetical protein RPB_0488 [Rhodopseudomonas palustris HaA2]
 gi|86570642|gb|ABD05199.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           HaA2]
          Length = 371

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/345 (20%), Positives = 148/345 (42%), Gaps = 3/345 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                 +++    +  ++ L  F+  +L  ++I     P+Y              AV+  
Sbjct: 5   DNKFFIFLLAAASVAFVWILLPFYGALLWGVVIAILFAPLYRQLNRAFGFRRNLAAVVGV 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++ L ++P   +      E   L +++   N   +   R   + P   W ++L  +  
Sbjct: 65  TVIVLLVLLPFSAIGTALAKEATGLYARIESGNLALLNNLRNFIEQPPS-WINDLLERFG 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++   A   G   +D+ +++  M+  LFF  RDG  I+ +
Sbjct: 124 IGSVAELQQRLSSVLMRGSQYLAGQALTIGQSTVDFTVNLFVMLYLLFFLLRDGDLIAGR 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L              +      VIR+T  G  +IA+ +G + G A+++ G+   +   V+
Sbjct: 184 LRRGLPLSVDQQNL-LLNKFTVVIRATVKGNMLIALIQGALGGLAFYVLGIGGALLWAVV 242

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     + +  V++YL+  G+++    L  +GA+ + +VD  LRP LVG   +
Sbjct: 243 MAFVSLLPAVGAGLVWAPVAVYLIATGSMWQGILLIAYGALVIGMVDNVLRPVLVGKDTR 302

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +P        +GG++  GL G  IGPV+ A+   +W     + ++
Sbjct: 303 MPDYVVLISTLGGLQVFGLNGFVIGPVIAAMFIAVWDIYSASRED 347


>gi|220912007|ref|YP_002487316.1| hypothetical protein Achl_1236 [Arthrobacter chlorophenolicus A6]
 gi|219858885|gb|ACL39227.1| protein of unknown function UPF0118 [Arthrobacter chlorophenolicus
           A6]
          Length = 439

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 110/344 (31%), Gaps = 17/344 (4%)

Query: 15  MIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +I+ +    ++ L        PV+ A ++     P+ +    ++   +     I  +  +
Sbjct: 51  LILLMAGTLIWLLSHITFLIIPVMVAALLAGLLSPVTAWL-KRRGLPAGLAVAITVLGFI 109

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L  +    ++   EL  + +   +                W S+      +   
Sbjct: 110 AVISGALALVGRQLVIGFGELWQQALEGVRQVQT------------WLSDGPLHLTAAQI 157

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   +    N    I   A  FG     +   ++  +  L FF  +G  I   L  L
Sbjct: 158 DQYVKEASDALQNNSSSILSGALSFGSTAGHFAAGLLLALFILIFFLLEGDRIWAFLVRL 217

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A      R     + S       +A  + + +G    + GVP  + LGV+  + 
Sbjct: 218 LPRRARAAAFGAGRKGWASMVSYARIQMFVAAVDAIGIGVGAAIIGVPLALPLGVLVFLG 277

Query: 252 AMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP    + +     +  L+     NA  +         +    L+P ++G  + L  +
Sbjct: 278 SFIPVVGALVTGVIAVLLALVANGPVNALIMLAIVLAVQQLEGHILQPLVMGKAVSLHPV 337

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +  G    G+ G      ++A+     +       E+++
Sbjct: 338 AVILSVAAGSYLAGIPGALFSVPILAVANSAIRYIAARTWEHEQ 381


>gi|160893763|ref|ZP_02074547.1| hypothetical protein CLOL250_01317 [Clostridium sp. L2-50]
 gi|156864748|gb|EDO58179.1| hypothetical protein CLOL250_01317 [Clostridium sp. L2-50]
          Length = 432

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 113/366 (30%), Gaps = 20/366 (5%)

Query: 8   PQGIMRWMIMFIILVSLY----------FLKGFFAPVLSALIIGFTSWPIYSSFI----- 52
            + I   +I  +++  ++          ++ G   P +    I F        F      
Sbjct: 24  KKLIKLIIITVLVVFCVFRFDKIYACGTWIIGLLMPFVIGFAIAFILNVPMKGFENLLFR 83

Query: 53  ----SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                          V++ + V+ +    +  L       +  +  +     +       
Sbjct: 84  NEKSRWYRFRRPVCMVLSIICVVLVIAFVITMLIPEVSRTVTAIGQQFPSTMEAIKNWAV 143

Query: 109 WLSD-IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            L+   P  +                 I        + +     FA+      +D+ + +
Sbjct: 144 NLAAGYPDIVDRIMEIDIAWDKVSESAINLIKNGSGSLLSSTFNFATSVVSGIVDFVVGL 203

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
            F I  L             + +L +        K   +  +   +   G  + A   GL
Sbjct: 204 FFAIYILAQKENLKRQTKGLIYALFKEKTADKIIKTCVMADETFANFITGQCLEACILGL 263

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +   +  +  +P  + + V   + A+IP         V  +L++  +        +   +
Sbjct: 264 MFFVSMSVLSIPYALTVSVTIVVTALIPVFGAFIGCGVGAFLILVDDPKKVLVFLILFIV 323

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    + P +VGG + LP +     ++ G   MG+LG+ I   L +++  + KE ++
Sbjct: 324 LQQVEGNLIYPHVVGGSVGLPSIWVLVAVIIGGDLMGILGMLIFVPLSSVLYALVKEFVL 383

Query: 348 AIKENK 353
                K
Sbjct: 384 MRLREK 389


>gi|116691904|ref|YP_837437.1| hypothetical protein Bcen2424_3807 [Burkholderia cenocepacia
           HI2424]
 gi|116649904|gb|ABK10544.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           HI2424]
          Length = 353

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 136/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A++   
Sbjct: 11  QKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVTMS 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +       +         + L    L+
Sbjct: 71  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLLQKYGLT 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 131 NIPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 190 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 248

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 249 AFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 309 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 353


>gi|328955593|ref|YP_004372926.1| protein of unknown function UPF0118 [Coriobacterium glomerans PW2]
 gi|328455917|gb|AEB07111.1| protein of unknown function UPF0118 [Coriobacterium glomerans PW2]
          Length = 458

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 125/347 (36%), Gaps = 2/347 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +     +   +I   ++  L  L      +    ++ F + P+  +   K       
Sbjct: 23  RIALRVWIAVGAIVIAVAVMRVLGVLAAVVEFLAVGSLVAFIASPMVRALERK-GVPRGI 81

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+I  + +  + I   + L      +  E+++++    +        +S     +  S 
Sbjct: 82  GALIGLLVIAAVVICIGVVLVPVFAQQSLEILTRLPEQLRSLGEWVVSVSQEFRSLSQSA 141

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             ++      SL  ++ ++++    D +      F   F          ++  ++  RD 
Sbjct: 142 WASQLDMALSSLADVASSYMRQVASD-VGEGVFPFISAFAWQLFIFFLGLVLAYWLARDY 200

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +++  L        +  +  I+ + +     GM I ++  G++  + + + G P  
Sbjct: 201 PRIHREIGILVGERHELNYHFMIAIIARSVGGYMRGMVITSLINGVLAYAGFLIIGHPYA 260

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             + V+ A+  ++P   P    +++  + +  +   A    +   +   I D  + P ++
Sbjct: 261 ALMAVLAALFHLVPVVGPWVSCSIATLIAVFYSPALAAWTLVVAVVSQNITDNVISPKIM 320

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +++    +   +V G   MG LG+ I   L A +  ++      
Sbjct: 321 QSAVQVHPAMSLTAIVAGSALMGALGMVIAIPLCAALKGLFIFYFEG 367


>gi|92118409|ref|YP_578138.1| hypothetical protein Nham_2910 [Nitrobacter hamburgensis X14]
 gi|91801303|gb|ABE63678.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14]
          Length = 660

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/361 (11%), Positives = 104/361 (28%), Gaps = 29/361 (8%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   ++  +++  LY  +  F P+  A+++ F   P+           +  + ++  
Sbjct: 19  DRALTSAIVAALVICGLYVGREIFVPIALAVLLSFVLAPLVDILERWHSPRAASVPLVVV 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + LF      L      E++ L   +    Q      + L  +              
Sbjct: 79  LAFVALFA-----LGSLIANEVRHLAEGLPRYQQTMQQKIQSLRALTATGPLDRAADILQ 133

Query: 128 SHPQSLKILSETFLKTNGI----------------------DFIPRFASRFGMIFLDYCL 165
           +  + + +        +                               S      L    
Sbjct: 134 NLGKEINVPQGQPPSPSAATSPPSKTPGEVEPIPVQVRPPPQSALENISALITPLLHPLA 193

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           ++  +I+ + F       +  +L  L                   +   FL    +    
Sbjct: 194 TVGVVIVFVVFILFQREDLRNRLIKLAGSNDLQSATAAIDDAAGRLSRLFLMQVALNTSF 253

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFL 283
           G+++     + GVPS +  G++ AIM  +P           +++ + +            
Sbjct: 254 GVIVAIGLLVIGVPSAILWGILAAIMRFVPYVGVFIAAFFPLTLAVAVDPGWSMLLWSGA 313

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +   ++ +   P LVG    L  +             G +GL +   L   + V+ +
Sbjct: 314 LILLTELVIGQVFEPLLVGHSSGLSPVAVVASATFWTALWGPIGLVLATPLTICLVVLGR 373

Query: 344 E 344
            
Sbjct: 374 H 374


>gi|227517666|ref|ZP_03947715.1| possible permease [Enterococcus faecalis TX0104]
 gi|227074875|gb|EEI12838.1| possible permease [Enterococcus faecalis TX0104]
          Length = 404

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 55  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 113

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 114 LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 167

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 168 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRK 227

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 228 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYL 287

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      AT   L   +   +    + P ++G  +K+  L     L+
Sbjct: 288 GPYLGLAPAVLVTIFNEPVKATLCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 347

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG+F+G    A+   I    I  +K  + +  +N
Sbjct: 348 VAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 389


>gi|221195860|ref|ZP_03568913.1| putative membrane protein [Atopobium rimae ATCC 49626]
 gi|221184334|gb|EEE16728.1| putative membrane protein [Atopobium rimae ATCC 49626]
          Length = 470

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 119/347 (34%), Gaps = 2/347 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++    +    +  +++++L  +      +    I+ F   P+ +   +  +     
Sbjct: 21  RRGIVAWALLGMAGVFVVVIMALGSVSQAVELLAIGGIVAFICAPLTNKLETW-KVPRAL 79

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+IA + V+ + +  +  +    + E   L+    L  +    + +  + I      + 
Sbjct: 80  SALIALIVVLLILVGFIALIAQPLIDESLILLRNAPLYARQIQDMVQE-AWITYDAIGNS 138

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++                   ++   A        ++ +S    ++  ++  +D 
Sbjct: 139 AVRSTVNSIILQASNLGVSFAGEAFRWLSANALSNISTLGEHFMSFFLGLVLAYWLAKDY 198

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + ++L  +         + +  I+ + +        + +I  G++          P  
Sbjct: 199 PVMVRELAVIAGPQRDDEVRLLLAILSRSVGGYMRSTIVTSIANGVLAYVGCLCIQNPYA 258

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             +G I  ++ +IP   P+    +++ L +  +        L   +   + D  L P ++
Sbjct: 259 GLIGTIVGVLHIIPVVGPVFSAGIALILSVLQSPMLGLWTLLVLVVAQNVTDNVLSPVVM 318

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +K+    +  G++ G    G++G  +   + A +  ++     A
Sbjct: 319 ASSVKVHPGLSLVGIMIGGALGGIVGTILAIPITAALRGVFVYYFEA 365


>gi|254481300|ref|ZP_05094545.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
 gi|214038463|gb|EEB79125.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
          Length = 360

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 122/344 (35%), Gaps = 7/344 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   +  +I V+LY L+   +P +   +I +   P+     S+     T    I  +   
Sbjct: 17  VAIALAAVICVALYLLQPILSPFVLGGLIAYLGDPLVDRLESR-GVGRTLGVAIVFLLFS 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + ++F     + ++  L+SKV    +               +    L     S   
Sbjct: 76  AIITLAIIFALPMLLHQLDALISKVPEIYRWLTQDALPWLQQRLAIPERRLPQVDWSGQL 135

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    S        +  I       G   L    ++  + +  F+  RD   +  +   +
Sbjct: 136 ADNWQSVGKFTAQSLKRITGS----GANLLLSLANLALVPVVAFYLMRDWNLLLDKALGI 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +++    +V+ +   G  ++    G +  +  WL G+   + LG+I  + 
Sbjct: 192 VPLSWQQRTSELAGEADEVVGAFLRGQFLVMCALGAIYSAGLWLVGLQLAMLLGLIAGLS 251

Query: 252 AMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++P    +     S+        +      + L   +   +    L P LVG  I L  
Sbjct: 252 SIVPYLGFMVGIVASLIAAYAQFNDWTMLLWVVLVFGVGQAVESMLLTPILVGDRIGLHP 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   F L+ G +  G +G+ +   + A+I V  + ++   + ++
Sbjct: 312 VAVIFVLMAGAQVAGFVGVVLALPVGAVIMVFLRHALQHYRSSE 355


>gi|206562699|ref|YP_002233462.1| hypothetical protein BCAM0842 [Burkholderia cenocepacia J2315]
 gi|198038739|emb|CAR54700.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 350

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 136/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A++   
Sbjct: 8   QKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVTMS 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +       +         + L    L+
Sbjct: 68  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSQYFHDIIHALPTSIQNLLQKYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NIPGIQKKLTDGAAQ-ISQFAAAQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 187 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L+ G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWVPAALYFLMIGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 350


>gi|312112992|ref|YP_004010588.1| hypothetical protein Rvan_0199 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218121|gb|ADP69489.1| protein of unknown function UPF0118 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 376

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 118/351 (33%), Gaps = 10/351 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+P      +I+ +  + L        P  +  ++ +   P+     ++        A  
Sbjct: 7   LSPHATFWVVIVALATMGLMVFSDVLMPFAAGFVLAYLFQPLVERL-NRIGVHRGAAAFA 65

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               +  +FI     L    + ++++    + +  Q          + P  + + +   +
Sbjct: 66  IIAVLSLIFIAIFALLIPPLVDQLRQFAQDLPVYYQRARAYL--WENYPQYLRSLQSTVQ 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 + +      +    +  +   +  F     +    +    I  FF  RD   + 
Sbjct: 124 QQEGGAAGQAQDVAGMVAGYLKGLAESSLAF----FNTLALLFLTPIVTFFLLRDWDQMF 179

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +DSL         +K++  V   I     GM I+     +       L G+   + +G
Sbjct: 180 ASIDSLLPKRDAPTIRKLAGEVDDTISGYLRGMFIVLSILSIFYMVTLGLIGLNYGLLIG 239

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   I++ +P     S   V+  + +     +      +         I    L P +VG
Sbjct: 240 LFAGIISFVPYLGSTSGLLVAGGVALAQFAPDYSMVALVIGVFIFGQIIEGNVLTPNIVG 299

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             ++L  +   F LV     +G  GL I   L A+I V+ + +I   +E++
Sbjct: 300 NQVRLHPVWLLFALVAAGYLLGFTGLLISVPLAAVIGVLVRFAIRKYQESE 350


>gi|227554814|ref|ZP_03984861.1| possible permease [Enterococcus faecalis HH22]
 gi|229546528|ref|ZP_04435253.1| possible permease [Enterococcus faecalis TX1322]
 gi|229548646|ref|ZP_04437371.1| possible permease [Enterococcus faecalis ATCC 29200]
 gi|307269734|ref|ZP_07551064.1| hypothetical protein HMPREF9498_01861 [Enterococcus faecalis
           TX4248]
 gi|307272513|ref|ZP_07553766.1| hypothetical protein HMPREF9514_01277 [Enterococcus faecalis
           TX0855]
 gi|307274712|ref|ZP_07555884.1| hypothetical protein HMPREF9521_00331 [Enterococcus faecalis
           TX2134]
 gi|307284538|ref|ZP_07564700.1| hypothetical protein HMPREF9515_02473 [Enterococcus faecalis
           TX0860]
 gi|307289607|ref|ZP_07569551.1| hypothetical protein HMPREF9505_02968 [Enterococcus faecalis
           TX0109]
 gi|307296548|ref|ZP_07576370.1| hypothetical protein HMPREF9509_03208 [Enterococcus faecalis
           TX0411]
 gi|312900294|ref|ZP_07759606.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|312904281|ref|ZP_07763443.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|312953084|ref|ZP_07771934.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|227176113|gb|EEI57085.1| possible permease [Enterococcus faecalis HH22]
 gi|229306277|gb|EEN72273.1| possible permease [Enterococcus faecalis ATCC 29200]
 gi|229308340|gb|EEN74327.1| possible permease [Enterococcus faecalis TX1322]
 gi|306496021|gb|EFM65607.1| hypothetical protein HMPREF9509_03208 [Enterococcus faecalis
           TX0411]
 gi|306499421|gb|EFM68794.1| hypothetical protein HMPREF9505_02968 [Enterococcus faecalis
           TX0109]
 gi|306503215|gb|EFM72469.1| hypothetical protein HMPREF9515_02473 [Enterococcus faecalis
           TX0860]
 gi|306508641|gb|EFM77739.1| hypothetical protein HMPREF9521_00331 [Enterococcus faecalis
           TX2134]
 gi|306510798|gb|EFM79815.1| hypothetical protein HMPREF9514_01277 [Enterococcus faecalis
           TX0855]
 gi|306513844|gb|EFM82446.1| hypothetical protein HMPREF9498_01861 [Enterococcus faecalis
           TX4248]
 gi|310628993|gb|EFQ12276.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|310632377|gb|EFQ15660.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|311292655|gb|EFQ71211.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|315025697|gb|EFT37629.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
 gi|315029067|gb|EFT40999.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
 gi|315034473|gb|EFT46405.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|315145308|gb|EFT89324.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
 gi|315146984|gb|EFT91000.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
 gi|315154004|gb|EFT98020.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
 gi|315156647|gb|EFU00664.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
 gi|315157763|gb|EFU01780.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
 gi|315162015|gb|EFU06032.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
 gi|315164523|gb|EFU08540.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
 gi|315170734|gb|EFU14751.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
 gi|315173965|gb|EFU17982.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
 gi|315575328|gb|EFU87519.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315578722|gb|EFU90913.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
 gi|315581495|gb|EFU93686.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
 gi|327534290|gb|AEA93124.1| putative permease [Enterococcus faecalis OG1RF]
 gi|329576852|gb|EGG58337.1| hypothetical protein HMPREF9520_01311 [Enterococcus faecalis
           TX1467]
          Length = 404

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 55  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 113

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 114 LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 167

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 168 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRK 227

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 228 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYL 287

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      A    L   +   +    + P ++G  +K+  L     L+
Sbjct: 288 GPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 347

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG+F+G    A+   I    I  +K  + +  +N
Sbjct: 348 VAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 389


>gi|227519073|ref|ZP_03949122.1| permease [Enterococcus faecalis TX0104]
 gi|227073421|gb|EEI11384.1| permease [Enterococcus faecalis TX0104]
 gi|315173850|gb|EFU17867.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1346]
 gi|323479551|gb|ADX78990.1| conserved hypothetical protein [Enterococcus faecalis 62]
          Length = 394

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 109/337 (32%), Gaps = 2/337 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI             PVL  +I+ +   P+      K      +   I  V ++ L +
Sbjct: 37  VSFIFKPIFVIFSAVLGPVLFGIILFYLLNPMVKRLEKK--IPRVWAIAILYVLIIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L LF     + +EL+ +     +  +   +            E   + ++       
Sbjct: 95  LAGLQLFPIIQDQTEELIKQFPSFWKSTLQAVQEFMAKTPFAKDLESANESINQLWGKLA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S      + +    +             L++    I  FF  +D     + +  +    
Sbjct: 155 NSFKDFAGDYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + + S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP
Sbjct: 215 FRPDFDEYSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F      +       I    + P ++G  +K+  +     
Sbjct: 275 YIGPFIAFIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+      GL+G+  G  +  L+ V         K+ 
Sbjct: 335 LLVMGELFGLMGVIFGIPMYCLVKVTVIYLFRKFKQR 371


>gi|315658357|ref|ZP_07911229.1| YubA like protein [Staphylococcus lugdunensis M23590]
 gi|315496686|gb|EFU85009.1| YubA like protein [Staphylococcus lugdunensis M23590]
          Length = 407

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 116/330 (35%), Gaps = 5/330 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +       AP++ +LI+ +   PI +              VI  ++++ L  + +  L 
Sbjct: 60  FIIVFNTIVAPIILSLILFYLINPIINLMERY-NIPRLLGIVIVFLAIVGLIALIVNLLI 118

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  L+                ++         +    +L             + 
Sbjct: 119 PVIGSQVTRLIHNAPAYVTKFNDTLDKVTHFSFLSSFYDQIQTNLDS----LSKKIPSIV 174

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T+  D        F    ++  + +I     LFF  +DG    +    +    F   +  
Sbjct: 175 TDYFDGFGTKLRTFAEAIVNVGVVLITTPFVLFFMLKDGHKFKEYTTKIMPPKFRKDYHD 234

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   + S   G  I++   G++L   Y + G+   + L  I A+ +++P   P   
Sbjct: 235 LLEKMSVQVGSYIQGQIIVSFCIGILLFIGYTIIGLDYSLILASIAAVTSVVPYLGPTIA 294

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            + +I + +  +      L +   +  FI    + P ++G  +K+  L   F L+     
Sbjct: 295 ISPAIIIALITSPLMLLKLAVVWTLVQFIEGHFISPNIMGKTLKIHPLTIIFILLSAGNL 354

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G++G+ +G    A++ V+     +  K  
Sbjct: 355 LGIVGVILGIPAYAILKVLVSHIFLIFKRR 384


>gi|27383175|ref|NP_774704.1| hypothetical protein blr8064 [Bradyrhizobium japonicum USDA 110]
 gi|27356349|dbj|BAC53329.1| blr8064 [Bradyrhizobium japonicum USDA 110]
          Length = 387

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 163/342 (47%), Gaps = 4/342 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-KEESSTFLAVIA 66
            +       + I+ +SL+   GF + ++ A I+    WP+Y +F ++     S + A   
Sbjct: 41  RKNARVVFALAIVALSLWTAAGFLSALIWATILAIALWPLYVAFANRVMSGPSGWSAFAF 100

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T  V  +   P+    Y    +  E+ + +  A + GI VP W++ +P     ++ W + 
Sbjct: 101 TCFVAVILFTPMALAIYQVAQQSGEIAAWLKKARESGIEVPDWIARLPIAAEIAQQWWRA 160

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                         +  +    +       G   L     ++F ++ALF    +G S++ 
Sbjct: 161 NLSDPQAATGWLKAISADNASDLFN---SLGGQLLHRMFMLLFSLVALFVLLSNGRSVAS 217

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +     E +     + +   +   IR T  G  ++A+GEGL++G  Y +AGVP+ V   +
Sbjct: 218 RFLETSERILGHPGEGVVEKIVDSIRGTVNGTVVVAVGEGLLIGVGYLVAGVPNAVMFTI 277

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            T   AM+P GA  +F+A ++ L+  GN   A  +F WGA+ +   D  + P LVGG  +
Sbjct: 278 FTTAFAMLPFGAWAAFSAAALTLISNGNEAAAAGVFCWGAVIMLAGDHFVWPVLVGGSAR 337

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           LPFL  F G+ GG+   GL+GLF+GPV+MA +  +W+E +  
Sbjct: 338 LPFLFAFVGIFGGLAAFGLIGLFLGPVVMAALLTVWREWVFR 379


>gi|331000798|ref|ZP_08324444.1| hypothetical protein HMPREF9439_02096 [Parasutterella
           excrementihominis YIT 11859]
 gi|329570326|gb|EGG52059.1| hypothetical protein HMPREF9439_02096 [Parasutterella
           excrementihominis YIT 11859]
          Length = 402

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 146/337 (43%), Gaps = 4/337 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +      FI +     +  F   +  A +I   SWP++     +    +    +I    
Sbjct: 13  VVRFLFGSFIAIGCFLVVWPFATAMSVAAVIAIVSWPLFKRVRKEVGGRNLVATLIMVSL 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L ++P+  L      E+  L+  V      G  VP  L +IP        W    + 
Sbjct: 73  LAILIVLPIAGLSLVSAQEIPTLIRYVREWIASGFTVPEELKEIPFVG----EWAYTQAA 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +     D + R A    ++  D  L +  M+  +FFFYRDG  +SQ+  
Sbjct: 129 HLLGNKEELAAIAQKLFDPVSRAALAGAVMLGDGLLQLFLMLFVIFFFYRDGEVLSQKSL 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L   +  +   ++  I+    RS   G+   A G+G+V    +W+AGVP  + LGV   
Sbjct: 189 ALLTRMSGSIGAEVRDIIVNTTRSVVFGIVGSAAGQGVVALIGFWIAGVPGAITLGVAVF 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++ +P G P+ +   + +L  KG +  A  L LWG++ +  VD  L+P L+     LP 
Sbjct: 249 VLSAVPIGPPLVWGPAAFWLYYKGEVGMAIFLVLWGSLAVSSVDNFLKPILISKGASLPL 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              + G+ GGV   G +G+ +GPV++A+   + K  +
Sbjct: 309 SLIYLGVFGGVLAFGFMGIILGPVVIAVGIAMSKTWL 345


>gi|77164922|ref|YP_343447.1| hypothetical protein Noc_1428 [Nitrosococcus oceani ATCC 19707]
 gi|76883236|gb|ABA57917.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
          Length = 547

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 45/312 (14%), Positives = 98/312 (31%), Gaps = 10/312 (3%)

Query: 5   MLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+I F++ +  +Y L+    P ++ +++ +   P+      K   S T   
Sbjct: 1   MSARRQLRFWLIGFLLFLISVYLLREILLPFVAGMVVAYLIDPLCDWLERK-GCSRTAAT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T   + +  + LL L      E+  L+  +                    +   +  
Sbjct: 60  SLVTAGFILVVSMVLLLLVPLLRSEIVHLIETLPSLIARAQD------STWPWLQLLQER 113

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                         +  +    I          G+   +    +  M +  F+  RD   
Sbjct: 114 WSIDMSQIQNAAKDQAGILIKWIGKTVGTILSSGLALANLLSLVFIMPVVAFYLLRDWDK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  Q+DSL         ++  +++  V+     G   + +  G        L G+   + 
Sbjct: 174 LIAQIDSLLPRKHAPVIREQVKLIDTVLSGFIRGQVSVCLLLGTFYAVGLALIGLDFGLM 233

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G++  +++ IP    I      I L             +     I   +    L P LV
Sbjct: 234 VGMLAGLLSFIPYVGTIVGFIAGIGLAFVQFSEWTPIFLVAGVFVIGQVVEGNVLTPRLV 293

Query: 302 GGPIKLPFLPTF 313
           G  + L  +   
Sbjct: 294 GNRVGLHPVMVI 305


>gi|328885460|emb|CCA58699.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
          Length = 374

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 101/340 (29%), Gaps = 14/340 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +   + + L G    +L A  +     P      ++          +   +V+   + 
Sbjct: 19  FLLGSWAFHQLVGLLVNILLAFFLALAIEPAVGRMAAR-GMRRGLATFLVFFAVLIFGVG 77

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ L      ++ ++V          I                E +   LS  +    +
Sbjct: 78  FVVLLGSMLAGQIVDMVENFPQYLDSLINWIN------------ENFHTDLSRVEVQDSV 125

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             +      +              L     ++ + +  F+F  DG  + + L S+     
Sbjct: 126 LSSEWLQKYVQNSAAGVLDVSATVLGGLFRLLTIFLFSFYFAADGPRLRRALCSVLPPAR 185

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIP 255
                +   I             ++A+  G+     + + GVP   AL V   +++  IP
Sbjct: 186 QTEVLRAWEIAVDKTGGYLYSRGLMALISGVAHFVLFEILGVPYAPALAVWVGLVSQFIP 245

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                   A+ + +    N + A  +  +  +     +  L+P L    + +     F  
Sbjct: 246 TIGTYLAGALPMLIAFTVNPWYALWVLGFVVVYQQFENYVLQPKLTSKTVDIHPAVAFGS 305

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++ G   +G +G  I    +A +       +       + 
Sbjct: 306 VIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|311898722|dbj|BAJ31130.1| hypothetical protein KSE_53550 [Kitasatospora setae KM-6054]
          Length = 463

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 39/357 (10%), Positives = 103/357 (28%), Gaps = 17/357 (4%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ I+  ++   +      + + L   F  +L A  +     P      ++     
Sbjct: 69  PRWLPRAILLALLGVGLFQLADWAFHQLIDLFVMLLVAFFLSLAMEPAVDRMAAR-GVRR 127

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + V       L  L    + ++ ++  ++    Q  I               
Sbjct: 128 GLGTFLVFIGVGLAVAGFLAALGTLLVDQITQIAGRLPQLLQDLINWINH---------- 177

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               T         ++L ++                     +        + +  F+F  
Sbjct: 178 -TFHTDLSLDQLQHQVLKDSGTIEKYAQQAADNVWGVTGTVVGGLFQAFTVGLFTFYFTA 236

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  + + + SL          +   I             ++A+       + +   G+P
Sbjct: 237 EGPRVRRTVCSLLPPSKQGEVLRAWEIALAKTGGYLYSRALLALVSTFAHWAFFAAIGLP 296

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              AL V   +M+  +P        A+ + + +     +A  + ++  +   I +  L P
Sbjct: 297 YAAALAVWVGVMSQFVPTIGTYLAGALPVLVGLTVRPVDALWVLVFVTVYQQIENYLLHP 356

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +    + +     F  ++ G   +G +G  I   + A +       +   +   + 
Sbjct: 357 RITARTVDVHPAVAFGSVIAGAALLGAVGALIAIPVAATLQGFVGTYVRRYEVEDDP 413


>gi|167850688|ref|ZP_02476196.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           B7210]
          Length = 352

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 124/327 (37%), Gaps = 3/327 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  FF  +    I+     P+     ++  +     A++    ++ + I+PL F+   
Sbjct: 24  WILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLAALVTLSLIILIVILPLAFVTAT 83

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+     ++     +     +             L    L+    ++          
Sbjct: 84  LVQEIAYAYQQIKTMQSNMTQYFQEFMHALPSSVHRVLHNYGLTDIAGIQKKLTDG-AAA 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F+   A   G     + +S   M+  +FF  RDG  I +++      L   + + + 
Sbjct: 143 ISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALP-LDEEHKQHLL 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
                V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P     + + 
Sbjct: 202 TKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVWV 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +GG+   
Sbjct: 262 PAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALF 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G  IGP++ AL    W       +
Sbjct: 322 GINGFVIGPLVAALFMASWDIFARTEQ 348


>gi|58336979|ref|YP_193564.1| permease [Lactobacillus acidophilus NCFM]
 gi|227903538|ref|ZP_04021343.1| permease [Lactobacillus acidophilus ATCC 4796]
 gi|58254296|gb|AAV42533.1| putative permease [Lactobacillus acidophilus NCFM]
 gi|227868425|gb|EEJ75846.1| permease [Lactobacillus acidophilus ATCC 4796]
          Length = 395

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 102/314 (32%), Gaps = 4/314 (1%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   P+   F  K         ++  + V+   I  +  L      ++  LV       
Sbjct: 66  YYIMNPVVDWFEKKFRVPRVLTIIVLFLFVVIAMIWIINILVPIAQHQINSLVKNWPHIW 125

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
              +   +     P            +   Q     S      + +  I    S   MI 
Sbjct: 126 NDAVNATQNALRDPRLHSVKGSIQGMIDDTQKTLFKSGQNTVNSTLGNISSAVSIITMIV 185

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +            LFF  +DG  +   +       +   + K+   +   + S   G   
Sbjct: 186 MTLLT----APFILFFMLKDGHQLRPYITKFVPETWQQSFSKLLYDINYAVASYIRGQIT 241

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +A   G++    Y + G+P  +AL ++   M +IP           I + I  +      
Sbjct: 242 VAFWVGVMFTIGYIIIGLPYGLALAILAGFMNLIPYFGTPLALIPVIVISIMTSGSMLVK 301

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +  AIE  I  + L P ++G  +++  + T   L+G     GL G+  G  + A++ +
Sbjct: 302 VLIVFAIEQTIETRILSPLVMGNKMQMHPVTTILLLIGASSVWGLWGVIFGIPIYAVLKI 361

Query: 341 IWKESIMAIKENKE 354
           I        +   +
Sbjct: 362 IVSRVYNYYRRESD 375


>gi|288958154|ref|YP_003448495.1| hypothetical protein AZL_013130 [Azospirillum sp. B510]
 gi|288910462|dbj|BAI71951.1| hypothetical protein AZL_013130 [Azospirillum sp. B510]
          Length = 355

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 115/348 (33%), Gaps = 9/348 (2%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  W+I + + +++L+ L     P +  L I +   P        +        
Sbjct: 1   MTPAKQLRFWLIGLGLFVLALWLLSDMLLPFVVGLAIAYLLDPAVDRLEVAR-LPRWLGT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +  + + ++  L L      ++  L+  +                IP         
Sbjct: 60  TLVLLGFLLVMVMMALLLLPLLQGQIAHLLEVLPTYATLVKERL-----IPALNRFIHRL 114

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +           +      + +  I       G+   D    +    +  F+  RD   
Sbjct: 115 PQDDVERLRAAAGAYAGELASLVGNIVTRILSGGLALFDIVTLMFITPVVAFYILRDWDL 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++DS          ++ +R V   +     G   + +  G+    A  +AG+   + 
Sbjct: 175 MVGKVDSWLPRQHAETVREQAREVNATLSGFLRGQATVCVVLGVFYALALSVAGLDFGLV 234

Query: 244 LGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G++  +++ IP    +        + LL    ++    +         +    L P LV
Sbjct: 235 IGLLAGLLSFIPYVGTLFGFVSSTGLALLQFDELWRVGIVVGIFLFGQAVEGNVLTPKLV 294

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G  + L  +   F L+ G    G +G+ +   + A+I V+ + ++   
Sbjct: 295 GDKVGLHAVWVMFALLAGGSLFGFVGVLLAVPVAAVIGVLTRFALRQY 342


>gi|227519714|ref|ZP_03949763.1| permease [Enterococcus faecalis TX0104]
 gi|227554097|ref|ZP_03984144.1| permease [Enterococcus faecalis HH22]
 gi|229545030|ref|ZP_04433755.1| permease [Enterococcus faecalis TX1322]
 gi|229549274|ref|ZP_04437999.1| permease [Enterococcus faecalis ATCC 29200]
 gi|255971986|ref|ZP_05422572.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256616886|ref|ZP_05473732.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256763240|ref|ZP_05503820.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256957841|ref|ZP_05562012.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256961160|ref|ZP_05565331.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256963721|ref|ZP_05567892.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257079779|ref|ZP_05574140.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257087584|ref|ZP_05581945.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257090743|ref|ZP_05585104.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257416791|ref|ZP_05593785.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|293384106|ref|ZP_06630000.1| membrane protein [Enterococcus faecalis R712]
 gi|293386921|ref|ZP_06631490.1| membrane protein [Enterococcus faecalis S613]
 gi|307270682|ref|ZP_07551973.1| hypothetical protein HMPREF9498_02775 [Enterococcus faecalis
           TX4248]
 gi|307271668|ref|ZP_07552939.1| hypothetical protein HMPREF9514_00419 [Enterococcus faecalis
           TX0855]
 gi|307276850|ref|ZP_07557961.1| hypothetical protein HMPREF9521_02462 [Enterococcus faecalis
           TX2134]
 gi|307287573|ref|ZP_07567616.1| hypothetical protein HMPREF9505_01021 [Enterococcus faecalis
           TX0109]
 gi|312902373|ref|ZP_07761579.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|312907943|ref|ZP_07766926.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312953633|ref|ZP_07772470.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|312978529|ref|ZP_07790267.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|227072802|gb|EEI10765.1| permease [Enterococcus faecalis TX0104]
 gi|227176723|gb|EEI57695.1| permease [Enterococcus faecalis HH22]
 gi|229305511|gb|EEN71507.1| permease [Enterococcus faecalis ATCC 29200]
 gi|229309922|gb|EEN75909.1| permease [Enterococcus faecalis TX1322]
 gi|255963004|gb|EET95480.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|256596413|gb|EEU15589.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684491|gb|EEU24186.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256948337|gb|EEU64969.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256951656|gb|EEU68288.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256954217|gb|EEU70849.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256987809|gb|EEU75111.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256995614|gb|EEU82916.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256999555|gb|EEU86075.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257158619|gb|EEU88579.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|291078586|gb|EFE15950.1| membrane protein [Enterococcus faecalis R712]
 gi|291083591|gb|EFE20554.1| membrane protein [Enterococcus faecalis S613]
 gi|306501311|gb|EFM70614.1| hypothetical protein HMPREF9505_01021 [Enterococcus faecalis
           TX0109]
 gi|306506487|gb|EFM75646.1| hypothetical protein HMPREF9521_02462 [Enterococcus faecalis
           TX2134]
 gi|306511546|gb|EFM80545.1| hypothetical protein HMPREF9514_00419 [Enterococcus faecalis
           TX0855]
 gi|306512992|gb|EFM81633.1| hypothetical protein HMPREF9498_02775 [Enterococcus faecalis
           TX4248]
 gi|310626034|gb|EFQ09317.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|310628471|gb|EFQ11754.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|310634043|gb|EFQ17326.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|311288678|gb|EFQ67234.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|315025258|gb|EFT37190.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
 gi|315032735|gb|EFT44667.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
 gi|315035807|gb|EFT47739.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|315143766|gb|EFT87782.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
 gi|315148577|gb|EFT92593.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
 gi|315150014|gb|EFT94030.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
 gi|315151900|gb|EFT95916.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
 gi|315155484|gb|EFT99500.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
 gi|315159219|gb|EFU03236.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
 gi|315164970|gb|EFU08987.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
 gi|315168593|gb|EFU12610.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
 gi|315170147|gb|EFU14164.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
 gi|315173354|gb|EFU17371.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
 gi|315576206|gb|EFU88397.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315579217|gb|EFU91408.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
 gi|315582922|gb|EFU95113.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
 gi|327535833|gb|AEA94667.1| permease protein [Enterococcus faecalis OG1RF]
          Length = 394

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|229548324|ref|ZP_04437049.1| permease [Enterococcus faecalis ATCC 29200]
 gi|256959606|ref|ZP_05563777.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|293384273|ref|ZP_06630161.1| putative membrane protein [Enterococcus faecalis R712]
 gi|293386996|ref|ZP_06631564.1| putative membrane protein [Enterococcus faecalis S613]
 gi|307288769|ref|ZP_07568747.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0109]
 gi|312906294|ref|ZP_07765305.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           512]
 gi|312909640|ref|ZP_07768494.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           516]
 gi|229306540|gb|EEN72536.1| permease [Enterococcus faecalis ATCC 29200]
 gi|256950102|gb|EEU66734.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|291078421|gb|EFE15785.1| putative membrane protein [Enterococcus faecalis R712]
 gi|291083538|gb|EFE20501.1| putative membrane protein [Enterococcus faecalis S613]
 gi|306500238|gb|EFM69577.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX0109]
 gi|310627669|gb|EFQ10952.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           512]
 gi|311290042|gb|EFQ68598.1| putative ATP synthase F0, A subunit [Enterococcus faecalis DAPTO
           516]
 gi|315166095|gb|EFU10112.1| putative ATP synthase F0, A subunit [Enterococcus faecalis TX1302]
          Length = 394

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 109/337 (32%), Gaps = 2/337 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI             PV+  +I+ +   P+      K      +   I  V ++ L +
Sbjct: 37  VSFIFKPIFVIFSAVLGPVIFGIILFYLLNPMVKRLEKK--IPRVWAIAILYVLIIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L LF     + +EL+ +     +  +   +            E   + ++       
Sbjct: 95  LVGLQLFPIIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S      + +    +             L++    I  FF  +D     + +  +    
Sbjct: 155 NSFKDFAGDYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + + S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP
Sbjct: 215 FRPDFDEYSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F      +       I    + P ++G  +K+  +     
Sbjct: 275 YIGPFIAFIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+      GL+G+  G  +  L+ V         K+ 
Sbjct: 335 LLVMGELFGLMGVIFGIPMYCLVKVTVIYLFRKFKQR 371


>gi|163853947|ref|YP_001641990.1| hypothetical protein Mext_4551 [Methylobacterium extorquens PA1]
 gi|163665552|gb|ABY32919.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 359

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 99/331 (29%), Positives = 162/331 (48%), Gaps = 5/331 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +            + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      E  +L++    A ++GIPVP +++ +P G  A   W         L       
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTEWWNAHLAHAGLAHELSER 149

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L T     + R     G   +   +   F ++ALFF +R+G ++  Q       LF    
Sbjct: 150 LNTTSNRDLTR---SLGAGLVHRAVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPRG 206

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP+
Sbjct: 207 ERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAPL 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV
Sbjct: 267 AFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGGV 326

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            T GLLGLF+GP +MA + ++W+E     +E
Sbjct: 327 ETFGLLGLFVGPAVMAALILLWREFTEGSEE 357


>gi|219669593|ref|YP_002460028.1| hypothetical protein Dhaf_3575 [Desulfitobacterium hafniense DCB-2]
 gi|219539853|gb|ACL21592.1| protein of unknown function UPF0118 [Desulfitobacterium hafniense
           DCB-2]
          Length = 344

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 110/323 (34%), Gaps = 9/323 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++   +P + A ++ +   P+  + + +          +  V ++    + +  +     
Sbjct: 25  VRPILSPFMLAFVLAYLLAPVVEALVRR-GVGRKISIALVFVGILLSLALLIFIVIPKLY 83

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +E+ +L   +    +    V +                  L    S             +
Sbjct: 84  IELSKLSQVLPETVRTLELVIQDFRANFRATGLPHQVVSVLDEHLSEGESFLIHWLEEFL 143

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D +P+  +   +  L          +   +   D   +      L        W+++ + 
Sbjct: 144 DNLPKALTSMSLFILS--------PVIAIYLLADWQRLQAGFLRLVPQRKRVAWQRVVQD 195

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +  ++RS   G  I+A+  G++ G    L G+   + +GVI  +  +IP   P+     S
Sbjct: 196 ISHIVRSFIRGNVIVALIVGILTGVGVKLVGMDYALLIGVICGVFDLIPYFGPLIGAVPS 255

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + L +  +   A  + +   I   +    + P L+G  + L  L   F L+ G    G  
Sbjct: 256 VLLGLIQSPMMALKVAIVILIVQQLESSIISPKLMGDSVGLHPLWIIFALLAGGEIAGFW 315

Query: 327 GLFIGPVLMALIAVIWKESIMAI 349
           G+       A++ VI +     +
Sbjct: 316 GMLFAVPFAAVLRVIIRHIYFWL 338


>gi|218532471|ref|YP_002423287.1| hypothetical protein Mchl_4584 [Methylobacterium chloromethanicum
           CM4]
 gi|218524774|gb|ACK85359.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 652

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 100/368 (27%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++  ++        L  +      E  +L + +   +         L        + 
Sbjct: 71  AVLLVVVLAF-----GLLGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGID----------------------FIPRFASRFGM 158
                                                             +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTESETNAPLGTAERPMQVEIHAPRTGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|255975043|ref|ZP_05425629.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|307285552|ref|ZP_07565691.1| hypothetical protein HMPREF9515_02935 [Enterococcus faecalis
           TX0860]
 gi|255967915|gb|EET98537.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|306502776|gb|EFM72041.1| hypothetical protein HMPREF9515_02935 [Enterococcus faecalis
           TX0860]
          Length = 394

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNHQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|255068161|ref|ZP_05320016.1| acetyltransferase, GNAT family [Neisseria sicca ATCC 29256]
 gi|255047588|gb|EET43052.1| acetyltransferase, GNAT family [Neisseria sicca ATCC 29256]
          Length = 356

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 129/346 (37%), Gaps = 8/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   ++   +  LY L     P + A ++ +   P+      K+       +++  V 
Sbjct: 12  WIIMGCVIAAFVWLLYALGDILTPFIVAAVLAYVLNPLVEWLQKKR-IKRGPASMMVMVF 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L +  +L +    + +   +VS++                +P     +  +      
Sbjct: 71  ALLLLLSLMLIIVPMLINQFNNMVSRIPQIVDFTQNRL-----LPWLNHVAGNYVHIDQA 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                + S T   +N +        R     +    ++I + + L++F  D    S  + 
Sbjct: 126 SVVKWLQSHTGELSNTLKAWVPTLMRQSGNVISGMSNLILLPLLLYYFLLDWKRWSYGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 ALVPRRFIDTYTRITSNMDEVLGEFLRGQLMVMLIMGLVYGVGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGN--IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++    +           +++   I  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATIAALLQFSTWHGLVMVWIVFGIGQFLESFIVTPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 F L+   + MG +G+  G  L A+  V+ +E + A   ++
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVNAYFHSR 351


>gi|257084417|ref|ZP_05578778.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256992447|gb|EEU79749.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
          Length = 394

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQIEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|240141033|ref|YP_002965513.1| putative membrane transport protein [Methylobacterium extorquens
           AM1]
 gi|240011010|gb|ACS42236.1| putative membrane transport protein [Methylobacterium extorquens
           AM1]
          Length = 652

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 100/368 (27%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLAGALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++  ++        L  +      E  +L + +   +         L        + 
Sbjct: 71  AVLLVVVLAF-----GLLGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGID----------------------FIPRFASRFGM 158
                                                             +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTKSETNAPLGTAERPMQVEIHAPRTGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|92109323|ref|YP_571611.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
 gi|91802405|gb|ABE64779.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
          Length = 801

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 99/354 (27%), Gaps = 11/354 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   +     +   ++L  LY+ +    P+  A +I F   P  +   ++        
Sbjct: 24  RELDIVKVAAALVSGGVLLTGLYYGRQILIPLAIAFLITFALNPPVTWL-ARLGLPRLLA 82

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-------IPG 115
             +  V+V+C  +     L         EL +           + + L         +  
Sbjct: 83  TSLVMVTVVCALVGLGTILGTQVRSIAVELPAYQSTILTKLADLRQNLKAPGLFDGVLKI 142

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                +        P     L +              A  + +   +   +   ++I +F
Sbjct: 143 FERVQKEVELKDDRPAEGSPLPQRVEIVPEPQTPFEQAFAWLVRSAEPLATSGIILIFVF 202

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
               D   +  +   L    F        +     I    L   ++ +  G+ L +  W+
Sbjct: 203 LALLDSADLRDRFLRLLGGNF-HRSTDAIQEAGARISRYLLMQLLVNVSYGVPLATGLWI 261

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVD 293
            GVP  +  G + AIM  +P   P+      I L                   +   I  
Sbjct: 262 IGVPGALLWGAVGAIMRFVPYIGPLIAAIFPIALAFAVDSGWSMLLWSVALIVMLELISS 321

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             + P L G    L  +             G LGL +   L   + V+ +    
Sbjct: 322 NIVEPLLYGSSTGLSAISLIAAATLWTVLWGPLGLILSTPLTVCLLVLGRNLPQ 375


>gi|15888479|ref|NP_354160.1| permease [Agrobacterium tumefaciens str. C58]
 gi|15156177|gb|AAK86945.1| permease [Agrobacterium tumefaciens str. C58]
          Length = 385

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 109/325 (33%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++ + ++ L        P ++ + + +   P+      +   S     V+
Sbjct: 10  LRRQVFFWIGVLAVFVLFLMVFSSILLPFVAGMALAYFLDPVADWLERR-GLSRLMATVV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             VS + +F + L+ +    + +  E ++++         +           W S     
Sbjct: 69  ILVSFVLIFALSLIIIIPLIVAQASEFITRIPQYISSLQQLIAGADTNLLPDWVSGQINS 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   L            I  +       G   +D    ++   +  F+   D   + 
Sbjct: 129 VKENFSKLLTE-----GAGFIGTLLTQIWNSGKSLVDVLSLLVVTPVVAFYLLLDWDRMI 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++DS     +    ++I+R + K I     G   + +  G+       L G+   + +G
Sbjct: 184 DKVDSWIPRDYVHTVRQIARDMDKTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL---FLWGAIELFIVDKTLRPFLVG 302
           + + +++ IP    +    +++ + I     +   +    +      FI    L+P LVG
Sbjct: 244 LFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLVVFFSGQFIEGNILQPKLVG 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L       G +G
Sbjct: 304 KSVGLHPVWLMFALFAFGALFGFVG 328


>gi|154686617|ref|YP_001421778.1| hypothetical protein RBAM_021860 [Bacillus amyloliquefaciens FZB42]
 gi|154352468|gb|ABS74547.1| hypothetical membrane protein [Bacillus amyloliquefaciens FZB42]
          Length = 360

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 111/342 (32%), Gaps = 17/342 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++ ++I+++  +  +  +           P++ + ++ +   P+     +K +      
Sbjct: 13  VLLLFLIIYLGTLIDFLFQPVVITVKTLFPPIVLSGVLYYLCRPLVRLLHAKLKLPEGIA 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +        LF++ L         +       +   +         L D          
Sbjct: 73  ILAIYAGTAGLFVLFLYTAGPAVQKQFTAFTDHIPELSAKAENWIGHLQDSKWFSRLQH- 131

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                                N    I    S       +  ++   +  AL++  ++G 
Sbjct: 132 ---------GDSFKKLADKAANYSGSIADSLSSLAGTAANAAITAAIIPFALYYMLKEGN 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              ++L  L         K+I R + + + S   G  +++   G+++   Y++ G+   +
Sbjct: 183 KAPRRLLQLLPEKHQKEGKQILRDMDEALSSYIQGQLLVSFCVGVLVTIGYFIIGLDYPL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG    +  +IP   P   T   + + +  +   A  +     I   +  + + P ++G
Sbjct: 243 VLGAFAMVTNLIPFIGPWIGTFPGVIVGLFDSPTEAVLVITVVVIVQQLESQLISPQIMG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + +  L   F L+   +  G+ G+ +     A   V+   
Sbjct: 303 RKLDIHPLTIIFLLLAAGKFSGIAGMLLAIPGYAAAKVVISH 344


>gi|218532888|ref|YP_002423704.1| hypothetical protein Mchl_5011 [Methylobacterium chloromethanicum
           CM4]
 gi|218525191|gb|ACK85776.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 359

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 99/331 (29%), Positives = 162/331 (48%), Gaps = 5/331 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +            + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      E  +L++    A ++GIPVP +++ +P G  A   W         L       
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVAHLPYGAAAITEWWNAHLAHAGLAHELSER 149

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L T     + R     G   +   +   F ++ALFF +R+G ++  Q       LF    
Sbjct: 150 LNTTSNRDLTR---SLGAGLVHRVVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPRG 206

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP+
Sbjct: 207 ERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAPL 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV
Sbjct: 267 AFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGGV 326

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            T GLLGLF+GP +MA + ++W+E     +E
Sbjct: 327 ETFGLLGLFVGPAVMAALILLWREFTEGSEE 357


>gi|33593825|ref|NP_881469.1| hypothetical protein BP2885 [Bordetella pertussis Tohama I]
 gi|33600943|ref|NP_888503.1| hypothetical protein BB1958 [Bordetella bronchiseptica RB50]
 gi|33563898|emb|CAE43157.1| putative exported protein [Bordetella pertussis Tohama I]
 gi|33575378|emb|CAE32455.1| putative exported protein [Bordetella bronchiseptica RB50]
          Length = 358

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 144/346 (41%), Gaps = 3/346 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++ L        +++ + +   + L  F+  V    I+     P++     +      
Sbjct: 1   MSQSSLFNSRAFVGLLIVVTIAFAWLLWPFYGAVFWGAILAIIFAPVHRRIAVRLAPRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + V+ + I+PL+F+    + E   L  ++   N +     +   D        
Sbjct: 61  LAALLTLLMVLLVVIIPLIFITGSLVQEGANLYQRLKSGNLNFGAYLQQAIDALPPTVHD 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L+   S++      +      FI   A   G     + +    M+  LFF  RD
Sbjct: 121 VLARFDLADLGSIQEKLTAGMMQ-ASQFIATQAFNIGQDTFQFLIGFGVMLYLLFFLLRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S++L      L   + + + R    VIR+T  G   +A  +G + G  + + G+  
Sbjct: 180 GSQLSRRLRRAVP-LDEHHKQHLFRKFTTVIRATVKGNIAVAAAQGALGGVMFSVLGIQG 238

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI A ++++P     + +  V++Y L+ G I+    L L+G + + +VD  LRP 
Sbjct: 239 ALLWGVIMAFLSLLPAIGAGLIWAPVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   KLP        +GG+   GL G  IGP++ AL    W   
Sbjct: 299 LVGKDTKLPDYVVLISTLGGMALFGLNGFVIGPLIAALFVACWDLF 344


>gi|134292899|ref|YP_001116635.1| hypothetical protein Bcep1808_4190 [Burkholderia vietnamiensis G4]
 gi|134136056|gb|ABO57170.1| protein of unknown function UPF0118 [Burkholderia vietnamiensis G4]
          Length = 350

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 134/345 (38%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A++   
Sbjct: 8   QKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLTLS 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +       +           L    L+
Sbjct: 68  LIILIVILPLVFVAGTLVQEIAYVYQELKDAPPNYSKYVHDIIQALPTSIQHLLQKYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NVPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 187 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L  G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVGFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     A +  
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQGE 350


>gi|303257155|ref|ZP_07343169.1| putative membrane protein [Burkholderiales bacterium 1_1_47]
 gi|302860646|gb|EFL83723.1| putative membrane protein [Burkholderiales bacterium 1_1_47]
          Length = 402

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 146/337 (43%), Gaps = 4/337 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +      FI +     +  F   +  A +I   SWP++     +    +    +I    
Sbjct: 13  VVRFLFGSFIAIGCFLVVWPFATAMSVAAVIAIVSWPLFKRVRKEVGGRNLVATLIMVSL 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  L ++P+  L      E+  L+  V      G  VP  L +IP        W    + 
Sbjct: 73  LAILIVLPIAGLSLVSAQEIPTLIRYVREWIASGFTVPEELKEIPFVG----EWAYTQAA 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +     D + R A    ++  D  L +  M+  +FFFYRDG  +SQ+  
Sbjct: 129 HLLGNKEELAAIAQKLFDPVSRAALAGAVMLGDGLLQLFLMLFVIFFFYRDGEVLSQKSL 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L   +  +   ++  I+    RS   G+   A G+G+V    +W+AGVP  + LGV   
Sbjct: 189 ALLTRMSGSIGAEVRDIIVNTTRSVVFGIVGSAAGQGVVALIGFWIAGVPGAITLGVAVF 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++ +P G P+ +   + +L  KG +  A  L LWG++ +  VD  L+P L+     LP 
Sbjct: 249 VLSAVPIGPPLVWGPAAFWLYYKGEVGMAIFLVLWGSLAVSSVDNFLKPILISKGASLPL 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              + G+ GGV   G +G+ +GPV++A+   + K  +
Sbjct: 309 SLIYLGVFGGVLAFGFMGIILGPVVIAVGIAMSKTWL 345


>gi|33597100|ref|NP_884743.1| hypothetical protein BPP2512 [Bordetella parapertussis 12822]
 gi|33566551|emb|CAE37807.1| putative exported protein [Bordetella parapertussis]
          Length = 358

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 145/346 (41%), Gaps = 3/346 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++ L        +++ + +   + L  F+  V    I+     P++     +      
Sbjct: 1   MSQSSLFNSRAFVGLLIVVTIAFAWLLWPFYGAVFWGAILAIIFAPVHRRIAVRLAPRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + V+ + I+PL+F+    + E   L  ++   N +     +   D        
Sbjct: 61  LAALLTLLMVLLVVIIPLIFITGSLVQEGANLYQRLKSGNLNFGAYLQQAIDALPPTVHD 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L+   S++      +      FI   A   G     + +    M+  LFF  RD
Sbjct: 121 VLARFDLADLGSIQEKLTAGMMQ-ASQFIATQAFNIGQDTFQFLIGFGVMLYLLFFLLRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S++L      L   + + + R    VIR+T  G  ++A  +G + G  + + G+  
Sbjct: 180 GSQLSRRLRRAVP-LDEHHKQHLFRKFTTVIRATVKGNIVVAAAQGALGGVMFSVLGIQG 238

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI A ++++P     + +  V++Y L+ G I+    L L+G + + +VD  LRP 
Sbjct: 239 ALLWGVIMAFLSLLPAIGAGLIWAPVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   KLP        +GG+   GL G  IGP++ AL    W   
Sbjct: 299 LVGKDTKLPDYVVLISTLGGMALFGLNGFVIGPLIAALFVACWDLF 344


>gi|53716720|ref|YP_105073.1| hypothetical protein BMAA0253 [Burkholderia mallei ATCC 23344]
 gi|67643155|ref|ZP_00441903.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121597560|ref|YP_991032.1| hypothetical protein BMASAVP1_1436 [Burkholderia mallei SAVP1]
 gi|124382408|ref|YP_001025433.1| hypothetical protein BMA10229_1633 [Burkholderia mallei NCTC 10229]
 gi|126442642|ref|YP_001063635.1| hypothetical protein BURPS668_A2642 [Burkholderia pseudomallei 668]
 gi|126446184|ref|YP_001077494.1| hypothetical protein BMA10247_A0289 [Burkholderia mallei NCTC
           10247]
 gi|126456863|ref|YP_001076534.1| hypothetical protein BURPS1106A_A2503 [Burkholderia pseudomallei
           1106a]
 gi|134278524|ref|ZP_01765238.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167002310|ref|ZP_02268100.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|167724720|ref|ZP_02407956.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           DM98]
 gi|167743670|ref|ZP_02416444.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           14]
 gi|167820858|ref|ZP_02452538.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           91]
 gi|167829215|ref|ZP_02460686.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           9]
 gi|167899287|ref|ZP_02486688.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           7894]
 gi|167907623|ref|ZP_02494828.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167915960|ref|ZP_02503051.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           112]
 gi|167923807|ref|ZP_02510898.1| Predicted permease PerM family protein [Burkholderia pseudomallei
           BCC215]
 gi|217422033|ref|ZP_03453536.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|226195553|ref|ZP_03791140.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237508341|ref|ZP_04521056.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|242313791|ref|ZP_04812808.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254177421|ref|ZP_04884077.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254184824|ref|ZP_04891413.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254186044|ref|ZP_04892562.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254194276|ref|ZP_04900708.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254203008|ref|ZP_04909370.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254208340|ref|ZP_04914689.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254263546|ref|ZP_04954411.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254301103|ref|ZP_04968547.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|52422690|gb|AAU46260.1| putative membrane protein [Burkholderia mallei ATCC 23344]
 gi|121225358|gb|ABM48889.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|126222133|gb|ABN85638.1| putative membrane protein [Burkholderia pseudomallei 668]
 gi|126230631|gb|ABN94044.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126239038|gb|ABO02150.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|134250308|gb|EBA50388.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|147746053|gb|EDK53131.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147751027|gb|EDK58095.1| putative membrane protein [Burkholderia mallei JHU]
 gi|157811370|gb|EDO88540.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157933730|gb|EDO89400.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|160698461|gb|EDP88431.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|169651027|gb|EDS83720.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184215416|gb|EDU12397.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217394264|gb|EEC34283.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|225932038|gb|EEH28038.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|235000546|gb|EEP49970.1| conserved hypothetical protein [Burkholderia pseudomallei MSHR346]
 gi|238524422|gb|EEP87855.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|242137030|gb|EES23433.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|243061963|gb|EES44149.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254214548|gb|EET03933.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|261826786|gb|ABN00128.2| putative membrane protein [Burkholderia mallei NCTC 10229]
          Length = 352

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 124/327 (37%), Gaps = 3/327 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  FF  +    I+     P+     ++  +     A++    ++ + I+PL F+   
Sbjct: 24  WILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLAALVTLSLIILIVILPLAFVTAT 83

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+     ++     +     +             L    L+    ++          
Sbjct: 84  LVQEIAYAYQQIKTMQPNMTQYFQEFMHALPSSVHRVLHNYGLTDIAGIQKKLTDG-AAA 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F+   A   G     + +S   M+  +FF  RDG  I +++      L   + + + 
Sbjct: 143 ISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALP-LDEEHKQHLL 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
                V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P     + + 
Sbjct: 202 TKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVWV 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + Y  + G I+    L  +    + +VD  LRP LVG   K+P        +GG+   
Sbjct: 262 PAAGYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALF 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G  IGP++ AL    W       +
Sbjct: 322 GINGFVIGPLVAALFMASWDIFARTEQ 348


>gi|325962604|ref|YP_004240510.1| permease [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468691|gb|ADX72376.1| putative permease [Arthrobacter phenanthrenivorans Sphe3]
          Length = 444

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 110/347 (31%), Gaps = 14/347 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++   ++  L  +     PV+ A ++     P+      +    S     +  V  +
Sbjct: 54  LILLVGGALVWLLSKISFLIIPVMVAALLAGLLNPVVGWL-KRYRLPSGLAVAVTVVGFI 112

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    L  +    +    EL S+ +   +                W ++      +   
Sbjct: 113 GLIAGSLALVGRQLVSGFGELWSEALAGVKQIQD------------WLADGPLHLTAAQM 160

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   T    +    I   A  FG     +   +I  +  L FF  +G  I   L  L
Sbjct: 161 DQYLKEATTALQDNTSSIVSGALSFGSTAGHFAAGLILALFILIFFLLEGDRIWAFLVRL 220

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A      R     + S       +A  + + +G+   + GVP  + L V+  I 
Sbjct: 221 LPRKARAAAFGAGRKGWTSMVSYARIQMFVAFVDAVGIGAGAAIIGVPLALPLSVLVFIG 280

Query: 252 AMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + IP    + +     +  L+     NA  +     +   +    L+P ++G  + L  +
Sbjct: 281 SFIPIVGALVTGAIAVLLALVANGPINALIMLGIVLLVQQLESHILQPLVMGKAVALHPV 340

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                +  G    G+ G      ++A+     +       E+++  +
Sbjct: 341 AVILSVAAGSYLAGIPGALFSVPILAVANSAVRYIAARTWEHEQVPA 387


>gi|225017521|ref|ZP_03706713.1| hypothetical protein CLOSTMETH_01448 [Clostridium methylpentosum
           DSM 5476]
 gi|224949671|gb|EEG30880.1| hypothetical protein CLOSTMETH_01448 [Clostridium methylpentosum
           DSM 5476]
          Length = 409

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 110/349 (31%), Gaps = 15/349 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--------------KKEESSTFLAVI 65
           +L  +  +     P +    + +   P+   F                K++       + 
Sbjct: 35  VLGVIRTIVRLMMPFMIGFALAYLLNPVMKFFERNLFERAFRNSRLKKKRKLVRGLSVLT 94

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWT 124
             V  +  F V LL L       +  +++ +    ++       L +         +   
Sbjct: 95  TVVVALAAFTVVLLLLIPQLAYSLMGILNNLPEYMKNLGNYVEGLVAGNQELANFVDTQM 154

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++      I +     T  +  +            D  L II  +  L+   +     
Sbjct: 155 TTINDTIQDFIATAMPSITKLLGNVTVGVIGVVNALKDSILGIIISVYVLYAKEQFIAQA 214

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + +L    F   +  + R    V      G  I ++  G++      + G+P  V +
Sbjct: 215 KKVIVALTPDSFSKPFISLVRETHGVFGGFISGKIIDSLIIGVLCFIGTSILGMPYAVLV 274

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI  +  +IP   P      S  L++  +        ++  +        L P+++GG 
Sbjct: 275 SVIVGVFNVIPFFGPFIGAIPSALLILMVDPLKCLWFVIFIIVLQQFDGNILGPYILGGT 334

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L      F ++      G +G+F+G  + A+I  +    I    E K
Sbjct: 335 TGLSAFWVIFAILTFGGLFGFIGMFVGVPVFAVIYTLISRGINKKLEKK 383


>gi|90419523|ref|ZP_01227433.1| putative permease [Aurantimonas manganoxydans SI85-9A1]
 gi|90336460|gb|EAS50201.1| putative permease [Aurantimonas manganoxydans SI85-9A1]
          Length = 386

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 105/329 (31%), Gaps = 9/329 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++  Q +   +   + ++ L+   G   P L  ++I +   P+   F  +   S   
Sbjct: 4   RSALIRRQVLFWSVAALVSILLLWVFSGILLPFLVGMVIAYFLDPVADWFERR-GFSRLM 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  +  F   +L +      ++   V ++         +       P     + 
Sbjct: 63  ATIVILILFVLFFAAAILVVVPVVGSQIASFVERIPDYLDRLQAIAVSARSGPLAFLFTG 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                                T  +           +  +++    I   +  F+   D 
Sbjct: 123 EEMNFKQDFAQFASE-----GTGIVTSFLGGLWSSSLAVVNFVSLFIVAPVVAFYLLLDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  ++D+          ++++R + + +     G   + +  G + G    L G+   
Sbjct: 178 DRMVDKIDAWTPRQHVDTVRRLAREIDRSVAGFVRGQGSVCLILGTIYGVGLTLTGLNFG 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRP 298
           + +G+   +++ IP         +++ +       +  +   + +   +  F     L+P
Sbjct: 238 LLIGLFAGLISFIPYVGSAIGLILALGVALVQFWPDWVSILMVAVVFFVGQFFEGNILQP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LVG  + L  +   F L       G +G
Sbjct: 298 KLVGASVGLHPVWLMFALFAFGALFGFVG 326


>gi|134298635|ref|YP_001112131.1| hypothetical protein Dred_0768 [Desulfotomaculum reducens MI-1]
 gi|134051335|gb|ABO49306.1| protein of unknown function UPF0118 [Desulfotomaculum reducens
           MI-1]
          Length = 343

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 120/341 (35%), Gaps = 9/341 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +IL  LY ++G F P + A+++ +   P+      +         +I  +
Sbjct: 11  RYLFLSFLIGLILFFLYLIRGLFVPFILAIVLVYMLNPLVERMEKR-GSPRVVAILILYL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +    L++     + +++++V  + L       + R +              + + 
Sbjct: 70  GVVIVATSLLMYGVPRMVNQLEKMVENIPLYTDQVEEIVRNIQKRFADSSMPPGVQQIVD 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       +    +D +    S            I    +  F+  +D   I    
Sbjct: 130 ERIRWVESRVLAIVRKSMDLLMALLSN--------LFYIALAPVLAFYIMKDLKLIKNWT 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+           ++R V  V  +   G   + +  G++   A+ + G+      G+I 
Sbjct: 182 RSIVPKELVEDVFYLARKVDDVFSNFIRGHLTVVVIVGILSSLAFMVIGLEFAAMFGIIA 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  +IP   P+   A ++ + +  + +    + L   I   +    + P ++G  + L 
Sbjct: 242 GIAELIPYFGPLIGAAPAVGIALLHSKYMTLKVILAVLIIQQVEGNIISPKIMGNCMGLH 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L     L+ G    G+ G+ +   L A+I +I       +
Sbjct: 302 PLVIIVALLAGGHLFGIAGMLLAVPLAAIIKIIVSFVWRKL 342


>gi|239816920|ref|YP_002945830.1| hypothetical protein Vapar_3950 [Variovorax paradoxus S110]
 gi|239803497|gb|ACS20564.1| protein of unknown function UPF0118 [Variovorax paradoxus S110]
          Length = 360

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/344 (22%), Positives = 141/344 (40%), Gaps = 3/344 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G+   ++  + +  L+ L  FF  VL  + +     P+Y   +          A+   
Sbjct: 7   QRGVFLALLAAVTVAFLWVLMPFFGAVLWGVALAILFTPLYKRLLKAMPGKPNAAALSTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + I+PL  +    + E+ ++   +     +     + + +     W   L+ +  
Sbjct: 67  AICLFIVILPLAMVGVSLVQEIVQVTQSIRSGQINFAAYFQQILNAVP-QWLLNLFDRFN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      +     G   I   A   G    D+ +S   M+  L+F  RDG ++S+ 
Sbjct: 126 LGDMEAWQARISAGAAQGSQLIAGQALTIGQNTFDFVISFFVMLYLLYFLVRDGSALSKS 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L   +   +      VIR+T  G   +AI +G + G A+WL GV   +   V+
Sbjct: 186 MREAVP-LARPHTHYLLNKFTTVIRATVKGNVAVAIAQGAIGGLAFWLLGVQGALLWAVL 244

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P  GA + +  V+IY L  G+ +    L   G   + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAVGAALIWGPVAIYFLATGHFWQGGILVFVGVFVIGLVDNILRPVLVGKDTQ 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +P        +GG+   G+ G  IGPV+ AL    W   + + +
Sbjct: 305 MPDYIVLMSTIGGMAIFGINGFVIGPVIAALFMAAWSLFVESGQ 348


>gi|257081875|ref|ZP_05576236.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256989905|gb|EEU77207.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
          Length = 394

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSIIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|239944747|ref|ZP_04696684.1| hypothetical protein SrosN15_27395 [Streptomyces roseosporus NRRL
           15998]
 gi|239991212|ref|ZP_04711876.1| hypothetical protein SrosN1_28166 [Streptomyces roseosporus NRRL
           11379]
 gi|291448209|ref|ZP_06587599.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
 gi|291351156|gb|EFE78060.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
           15998]
          Length = 388

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 107/353 (30%), Gaps = 18/353 (5%)

Query: 8   PQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           P+ ++  + ++        +   L G    VL A  +     P      S+         
Sbjct: 6   PRAMVLALALYACFQLSSWAFDQLIGLLTNVLIAFFLALAIEPAVGRMASR-GIRRGLAT 64

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  + +    +  ++ L      ++ ++V +        I             W ++ +
Sbjct: 65  FLVFLGLTIFGVGFVVLLGSMLAGQIVDMVDEFPKYIDSVIN------------WVNQTF 112

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              LS  +    L  +      +              +     ++ + +  F+F  DG  
Sbjct: 113 HTELSRVEVQDSLLHSDWLQKYVQNSATGVLDVSTTVIGGLFRLLTIFLFSFYFAADGPR 172

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + L S+          +   I             ++A+  G+       + GVP   A
Sbjct: 173 LRRALCSVLPPARQTEVLRAWEIAVDKTGGYIYSRGLMALISGVAHYILLVILGVPYAPA 232

Query: 244 LGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V   +++  IP        A+ + +    + + A  +  +  I     +  L+P L  
Sbjct: 233 LAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVIYQQFENYVLQPKLTA 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             + +     F  ++ G   +G +G  +    +A +       +       + 
Sbjct: 293 KTVDIHPAVAFGSVIAGTALLGAVGALVAIPAIATLQAFLGAYVKRYDVTDDP 345


>gi|297583809|ref|YP_003699589.1| hypothetical protein Bsel_1511 [Bacillus selenitireducens MLS10]
 gi|297142266|gb|ADH99023.1| protein of unknown function UPF0118 [Bacillus selenitireducens
           MLS10]
          Length = 367

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 115/318 (36%), Gaps = 4/318 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +  F P L A ++ +   P+ +  + + +       ++  ++ + L    +  +     
Sbjct: 37  FQTMFLPFLLAGVLFYLLRPVVN-LMERFKVPRVVSILLIYIAGIGLMTFIVFLIGPTLQ 95

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++  LV    +  +    +   + + P   W  + +    +        +         
Sbjct: 96  EQVMNLVDNAPMLFEEVRKLIINIENNP---WVQDQFQPSETFSIENLTENIADYMAAAF 152

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           DF+    + F      + L II +   LFF  +DG     Q+            K+I   
Sbjct: 153 DFLGNNIAGFIGAVTSFVLVIIVLPFILFFLLKDGDKAPDQVLRFLPEKQQVEGKRILSD 212

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   + S   G  I+++  G ++  +Y + GV   + L +   +  ++P   P   T  +
Sbjct: 213 MDSKLSSYIQGQLIVSLFVGTLMYISYLIIGVDYSLILALFAMVTNVVPFVGPWIGTIPA 272

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +      + +   I   I    + P ++G  +K+  L     ++   R  GL+
Sbjct: 273 VIVAVIDSWVTMLWVIVAIVIVQQIESNLISPNVMGKKLKVHPLTIIVLILVAGRFGGLI 332

Query: 327 GLFIGPVLMALIAVIWKE 344
           GL +   L A+  V+   
Sbjct: 333 GLILAVPLYAVTKVVVSH 350


>gi|288905039|ref|YP_003430261.1| hypothetical protein GALLO_0834 [Streptococcus gallolyticus UCN34]
 gi|306831112|ref|ZP_07464273.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325978008|ref|YP_004287724.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731765|emb|CBI13326.1| hypothetical membrane protein [Streptococcus gallolyticus UCN34]
 gi|304426678|gb|EFM29789.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           TX20005]
 gi|325177936|emb|CBZ47980.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 395

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/361 (16%), Positives = 125/361 (34%), Gaps = 19/361 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
            LN Q ++  +I F++ ++LY              F+     P++ + I+ +   P+   
Sbjct: 18  FLNNQAVVAVLITFLVFLTLYLFTKISFLFTPIISFIAIIMLPLVISAILYYLIKPLVDF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +   S T    I    ++ L I  +         ++   V  +    +         
Sbjct: 78  IEKR-GVSRTTSIFIVFAIIIALLIWAVASFIPTIQEQLTSFVENLPSYVRSINVEANKF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P      E   + LS+  +  I        N ID+   FAS    + +   +S   +
Sbjct: 137 LESPWLANYQEELEEMLSNVSTKAIDYAESFSKNAIDWASNFASAIARVTVAIIMSPFIL 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +F RD   + + L             ++   + K +     G   +AI  G++  
Sbjct: 197 F----YFLRDSGKMKEGLLKTLPTRMRRPISRVLGDINKQLAGYVQGQVTVAIVVGIMFT 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+      G+I   + MIP           + + +         + +   +E  
Sbjct: 253 IFFNIIGLRYAATFGIIAGFLNMIPYLGSFLAMVPVVIMGVVQGPIMLIKVLITFVVEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+F+G  + A I V+ KE     K
Sbjct: 313 IEGRFVSPLVLGSKLSIHPITIMFILLTSGSMFGVWGVFLGIPIYASIKVVVKEIFEWYK 372

Query: 351 E 351
            
Sbjct: 373 R 373


>gi|311109042|ref|YP_003981895.1| hypothetical protein AXYL_05884 [Achromobacter xylosoxidans A8]
 gi|310763731|gb|ADP19180.1| hypothetical protein AXYL_05884 [Achromobacter xylosoxidans A8]
          Length = 366

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 155/357 (43%), Positives = 221/357 (61%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +L    I RW+++ ++L  +YFL GF  P L+ALIIG  SWP+Y   +++    +   
Sbjct: 2   QPVLPAYLIARWLLLLVLLAGVYFLSGFLVPALAALIIGLASWPLYQRLVARCGGRTALA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +A + V+ + IVP+     Y + E     +  + AN+HG+ VP W++ +P        
Sbjct: 62  ASLALLVVIVVLIVPMSLALSYAIKEASTFFAWAIAANRHGVDVPNWITSMPVVGERLGQ 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +               +    +  I R             L+++FM+I LFF Y+DG 
Sbjct: 122 YWEAYIGQPHALGALVEAVSGEHLGNIYRMVLAATGNVFQLLLTVLFMLITLFFVYKDGI 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  QLD LGE + PA W++ SR+VP  I ST  GM +IA+GEGLVLG AYW+AGVPS V
Sbjct: 182 RMVAQLDVLGERILPARWQRFSRVVPATINSTVTGMGLIALGEGLVLGIAYWVAGVPSPV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LGV+T  MA+IPGGAP+SFT VS+YL+  G++     L +WG++ELFIVDKTLRP LVG
Sbjct: 242 LLGVVTGFMALIPGGAPLSFTLVSLYLVGSGHLVAGIALMVWGSVELFIVDKTLRPRLVG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GP+KLPFLPTFFGLVGGV+TMG++GLF+GPVLMAL+  +W+E +    + ++    N
Sbjct: 302 GPVKLPFLPTFFGLVGGVKTMGIVGLFVGPVLMALLVAVWREWVHHEVQERDAARIN 358


>gi|163853611|ref|YP_001641654.1| hypothetical protein Mext_4214 [Methylobacterium extorquens PA1]
 gi|163665216|gb|ABY32583.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 652

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 43/368 (11%), Positives = 100/368 (27%), Gaps = 29/368 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++  +  +LYF +    PV  A+++ F   P   +    +     
Sbjct: 11  LRQALPVVTTLASMLLVVTLASALYFGRDILVPVALAILLSFVLVPAVRALRRVRVPRVA 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++  ++        L  +      E  +L + +   +         L        + 
Sbjct: 71  AVLLVVVLAF-----GLLGAIGSLIAREAAQLATDLPRYSLTLRDKITALRAATAERGSL 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGID----------------------FIPRFASRFGM 158
                                                             +         
Sbjct: 126 SDTFSGFFDMAEEIGKELQPPAAKTESETNAPLGTAERPMQVEIHAPRSGLLTTLGSVAG 185

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L    ++  +++   F       +  +   L                   +   F+  
Sbjct: 186 GVLHPLATLGLILLFTIFILLQREDLRNRAIRLAGSSDLRRTTAAIDDATSRLSRFFVAQ 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIF 276
            I+ +  GLV+G   W  GVPS +  GVI  I   +P    +      ++I + +     
Sbjct: 246 LILNVAFGLVIGVGLWFIGVPSPILFGVIAGISRFVPYVGAVLSAALPLAIAVAVDPGWS 305

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A  + +   +   I    + P L G    +  +             G +GL +   L  
Sbjct: 306 MAIQVAILFVVIEPIAGHVVEPLLYGHSTGISPIAVILAATIWTFLWGPIGLLLATPLTV 365

Query: 337 LIAVIWKE 344
            + V+ + 
Sbjct: 366 CLVVLGRH 373


>gi|70726551|ref|YP_253465.1| hypothetical protein SH1550 [Staphylococcus haemolyticus JCSC1435]
 gi|68447275|dbj|BAE04859.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 409

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 115/330 (34%), Gaps = 5/330 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +       AP++ +LI+ +   P+ +              +I  ++++    + +  L 
Sbjct: 59  FIIIFNTIVAPIILSLILFYLINPVINLMERY-NIPRLLGIIIVFLAIVGGATLIINLLI 117

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  L +               ++           +   +             + 
Sbjct: 118 PLIGDQITRLANNFPKYVDKFNNAIDQVTH----FSFLSSFYTQIQDWLDSVSNKIPSMV 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           ++  D        F    ++  + ++     LFF  +DG    +    +    F   +  
Sbjct: 174 SSYFDGFGTKIRSFAEAIVNVGVVLVTTPFVLFFMLKDGHKFKEYSTKIMPPKFRKDYHD 233

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   + S   G  I++   G++L   Y + G+   + L  I A+ +++P   P   
Sbjct: 234 LMEKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIGLDYGLVLACIAAVTSVVPYLGPTIA 293

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            + +I + I  + F    L +   +  FI    + P ++G  +K+  L   F L+     
Sbjct: 294 ISPAIIIAIITSPFMLLKLIVVWTLVQFIEGHFISPNVMGKTLKIHPLTIIFILLSAGNL 353

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G++G+ +G    A++ V+     +  K  
Sbjct: 354 LGIVGVILGIPGYAILKVLVSHLFLLFKRR 383


>gi|300743806|ref|ZP_07072826.1| putative permease [Rothia dentocariosa M567]
 gi|300380167|gb|EFJ76730.1| putative permease [Rothia dentocariosa M567]
          Length = 448

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 115/354 (32%), Gaps = 17/354 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW---PIYSSFISKKEESSTFLAVIATV 68
            R +++   +  ++      + ++ + ++              + K    +     IA +
Sbjct: 48  WRLIVVVGAVWLVWQGLSKVSLLIISAMVAALLAALLSPAVYAMRKHGIRAGGATAIAEL 107

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++      L       +     L +  +   Q  +   + +    G    +++  +   
Sbjct: 108 GMILGIAALLALTGQQLVRGFVSLTNNAIQGYQQLVDWLKGMGYELGADQLNQILNQI-- 165

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +N    + R  S  G    ++   ++  +  L FF  +G  I   +
Sbjct: 166 ----------EQAVSNNPSTVLRSVSEVGSTAAEFATGVLITLFTLVFFLMEGERIWLFI 215

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             R   K + +      ++A  + + +G    + GVP  + LGV+ 
Sbjct: 216 VKLFPKQARDAVNGAGRAGWKSLGAYVRVQILVAAIDAVGIGVGAAILGVPLAIPLGVLV 275

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP     IS     +  L+      A  +     +   +    L+P ++G  + L
Sbjct: 276 FLGSFIPVIGALISGAVAVLLALVALGPVQALIMIGIVLLVQQLESHILQPLIMGKAVSL 335

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE-SIMAIKENKEKISSNF 360
             L   F + GG    G  G      ++A++  + +  +    +++ E     F
Sbjct: 336 HPLAVIFAVAGGSMIFGAAGALFAVPVLAVVNSVVRYLAARQWEDDPELRREEF 389


>gi|293385024|ref|ZP_06630858.1| membrane protein [Enterococcus faecalis R712]
 gi|293389294|ref|ZP_06633756.1| membrane protein [Enterococcus faecalis S613]
 gi|312906013|ref|ZP_07765026.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312909359|ref|ZP_07768215.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|291077702|gb|EFE15066.1| membrane protein [Enterococcus faecalis R712]
 gi|291081458|gb|EFE18421.1| membrane protein [Enterococcus faecalis S613]
 gi|310628008|gb|EFQ11291.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|311290383|gb|EFQ68939.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
          Length = 404

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 107/323 (33%), Gaps = 7/323 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 55  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 113

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 114 LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 167

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 168 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAVQRFLPEKRK 227

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 228 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYL 287

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      A    L   +   +    + P ++G  +K+  L     L+
Sbjct: 288 GPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 347

Query: 318 GGVRTMGLLGLFIGPVLMALIAV 340
                 GLLG+F+G    A+   
Sbjct: 348 VAGNLAGLLGIFLGVPFYAICRT 370


>gi|307290384|ref|ZP_07570299.1| hypothetical protein HMPREF9509_00687 [Enterococcus faecalis
           TX0411]
 gi|312899976|ref|ZP_07759294.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|306498577|gb|EFM68079.1| hypothetical protein HMPREF9509_00687 [Enterococcus faecalis
           TX0411]
 gi|311292972|gb|EFQ71528.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|315030341|gb|EFT42273.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
          Length = 394

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLIKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|209965732|ref|YP_002298647.1| hypothetical protein RC1_2451 [Rhodospirillum centenum SW]
 gi|209959198|gb|ACI99834.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 362

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/356 (22%), Positives = 146/356 (41%), Gaps = 3/356 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L  + +    ++ +    +  +K F + +L A+I+ + +WP Y            
Sbjct: 1   MATDKLVERALGMAALVVLGTAIILVVKPFLSALLLAVILVYATWPAYLWVERTCGGRKN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A + T     + + P   +       +  + S +    ++G P P       G +   
Sbjct: 61  LAAFLMTALSSLVIVAPFAIVGATLADSVGGISSGIRQIIENGPPPP---PVWLGDVPLV 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W        +        L  +GI      A   G +     L ++  +   FF YR 
Sbjct: 118 GPWAVGYWADLTAGGQDLLTLLRSGIRPATDLALAAGSVIGAGVLELMAAVFIAFFLYRG 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I++Q+    E         +  +    ++    G+   A+ +G++ G  + +AG+P 
Sbjct: 178 GRDIARQVAYAIERFTGPRVHHLLEVAGGTVQGVIYGILGTALAQGILAGLGFVVAGIPW 237

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG +T ++++IP G P+ +  VS++L  +G I  A  +  WG   +  VD  LRP+L
Sbjct: 238 GPFLGFMTFVVSVIPMGPPLIWVPVSVWLATEGEIGWAVAMAAWGFFVVSSVDNVLRPYL 297

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +  F G++GGV   G++G+FIGPVL+AL   + +E            
Sbjct: 298 ISRGSALPLVLVFMGVLGGVLAFGVIGIFIGPVLLALGYALMREWTAQAMSRPPDP 353


>gi|170701167|ref|ZP_02892139.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|171317430|ref|ZP_02906622.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
 gi|170133910|gb|EDT02266.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|171097385|gb|EDT42228.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
          Length = 350

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 136/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  F   V    I+     P+     ++  +     A+++  
Sbjct: 8   QKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWLAARFGKRRNLAALVSMS 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +       +         + L    LS
Sbjct: 68  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSRYFHDIIHALPTSIQNLLQKYGLS 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NIPGIQKKLTDGAAQ-ISQFAATQALSIGQNTFQFVVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V  G + 
Sbjct: 187 RRSIP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L  G I+    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWIPAALYFLAIGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQGE 350


>gi|320352416|ref|YP_004193755.1| hypothetical protein Despr_0280 [Desulfobulbus propionicus DSM
           2032]
 gi|320120918|gb|ADW16464.1| protein of unknown function UPF0118 [Desulfobulbus propionicus DSM
           2032]
          Length = 404

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 79/357 (22%), Positives = 151/357 (42%), Gaps = 7/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  ++N + ++  +++ I  + L  ++ F  P+  A I      P +    ++      
Sbjct: 1   MKRELIN-KSVLLALVLLISALFLDMIRQFLMPMFMAGIFSAILSPAHRWLTARIGNREN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++  V ++ L + PL  L    + +   +   V    Q  I  P  ++         
Sbjct: 60  IASILVIVGIVVLVLAPLSILVGVVVGQAISVSQSVTPWVQSFINEPTAITAYMEKF--- 116

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + K +   +++ I     +  N   F+    S    + ++   S + M+  +F+F   
Sbjct: 117 -PYYKEILPYRAVIIEKAGMMVGNLSTFLINSLSEVTKLTVNAVFSSVIMLYVMFYFLTM 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +  ++      L     +++ R    V ++T  G  II   +G + G A+ LAG+  
Sbjct: 176 GEVLLTKILYFLP-LQDRDERRLLRRFTSVTKATLKGTLIIGALQGFICGVAFALAGIQG 234

Query: 241 HVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G + A+M++IP  G  I +    I L +KG  F A  L +        +D  LRP 
Sbjct: 235 PVFWGTVMAVMSIIPAFGTAIVWVPALIILALKGQFFGAVILGVLCGAVAGNLDNLLRPR 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           LVG   ++  L   FG +GG+   G+LG+ IGP++ AL   IW+    A +     +
Sbjct: 295 LVGKDTEMHDLFVLFGTLGGISMFGVLGIIIGPIVAALFITIWEIYGKAFEAYLPDV 351


>gi|329120004|ref|ZP_08248676.1| permease [Neisseria bacilliformis ATCC BAA-1200]
 gi|327463917|gb|EGF10231.1| permease [Neisseria bacilliformis ATCC BAA-1200]
          Length = 356

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 120/346 (34%), Gaps = 8/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+           +  L+    P + A ++ +   P+      K        +++  + 
Sbjct: 12  WIIGTAFFLACGALVLALRDILMPFIVAAVLAYILNPLVEKLRDK-GVPRGAASMLVMLF 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L +  LL L    + + + L +++                   G             
Sbjct: 71  ALLLLLALLLILVPMLITQFENLTNRLPQLIDFAQNKALPWLHAHFGGSLP-----LNKE 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +  + + +         I       G        + + + + L++F  D    S  + 
Sbjct: 126 AAANWLKNHSGTVQQAASQIAPALMAQGGALAVGVSNFVLLPLLLYYFLFDWQRWSHGIR 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    F   + +ISR +  V+     G  ++ +  GLV G+   L G+ S  A+G+I  
Sbjct: 186 ALIPRRFIDTYTRISREMDDVLGEFLRGQLMVMLIMGLVYGTGLMLTGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  +P     +   ++         +      ++   A+  F+    + P +VG  I L
Sbjct: 246 ILVFVPYLGAFTGLLLATVAALLQFNSWHGMVAVWSVFAVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 F L+   + MG +G+ +G  L A+  V+ +E   A   ++
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLVGLPLAAVCLVLLREGSQAYFASR 351


>gi|326332948|ref|ZP_08199205.1| putative permease [Nocardioidaceae bacterium Broad-1]
 gi|325949306|gb|EGD41389.1| putative permease [Nocardioidaceae bacterium Broad-1]
          Length = 400

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 105/333 (31%), Gaps = 17/333 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L  +      V+ +L I     P+      +      +  +   + V+    +  + L 
Sbjct: 83  LLTTMGSVILQVVVSLFIAAGINPMVVFLQRRGFARP-WAVLTVILGVLGALALFFVALV 141

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++ ++ + V    +                  ++   +     Q L  + E    
Sbjct: 142 PVISDQVAKISANVPDWIEELQR--------------NQRIQQLNEDYQILDKVQEYVAS 187

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +      A   G+  ++  ++   +I+   +F          +  L          K
Sbjct: 188 GDFVSSAFGGALGVGLAVINVLVTAFIVIVLTLYFIAAYDQTKNAIYRLAPASRRDRVSK 247

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAP-I 260
           +   V   I     G  I+A+  GL      ++ G+    VAL  +  I  +IP     I
Sbjct: 248 LGDRVFDGIGGYVSGAFIVALCAGLSTLVLLFVIGMGEYAVALAFVVMITDVIPMIGATI 307

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               V        ++       ++        +  + P ++   + +P + T    + G 
Sbjct: 308 GAVIVCAITFATTDVKTGLIAVVFYIAYQQFENYVVYPRVMSRSVDIPGVVTVIAALIGA 367

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +G++G  +     A I ++ +E  +  ++ +
Sbjct: 368 SLLGVVGALLAIPTAAAILMLIREVYVRAQDER 400


>gi|260664188|ref|ZP_05865041.1| permease [Lactobacillus jensenii SJ-7A-US]
 gi|260562074|gb|EEX28043.1| permease [Lactobacillus jensenii SJ-7A-US]
          Length = 395

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 106/302 (35%), Gaps = 4/302 (1%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   PI   F  K +   T   ++  + V+   I  +  L      ++  L+       
Sbjct: 61  YYMMNPIVDFFEQKLKVPRTVTILVLFLLVLGALIWIINSLLPIIQNQVDALIKNWPNIW 120

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
              +   + L   P            +   +     S     T  +  I    S   MIF
Sbjct: 121 DTSVKTIQNLLHDPHLKGVKSNINSVIDSIEKTLFKSWQDTGTAALTNISSAVSVITMIF 180

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +            LF+  +DG  ++  L       +   + ++   + + I +   G   
Sbjct: 181 MTLLT----APFVLFYMLKDGHQLNGYLTKFAPRRWQDSFSRLLHDINEAISAYIRGQIT 236

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +A+  G++    Y + G+P   AL V+ A M +IP           + +    +      
Sbjct: 237 VAVWVGIIYAIGYNIIGLPYGSALAVLAAFMLLIPYFGTFIALIPVLIIASITSWGMLIN 296

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +  AIE  I  + + P +VG  +K+  + T   L+G     GL G+  G  + A++ +
Sbjct: 297 VLIVFAIEQTIETRFISPIIVGNKMKMHPITTILLLIGASAVWGLWGVIFGIPIYAVVKI 356

Query: 341 IW 342
           + 
Sbjct: 357 VV 358


>gi|227821507|ref|YP_002825477.1| putative permease protein [Sinorhizobium fredii NGR234]
 gi|227340506|gb|ACP24724.1| putative permease protein [Sinorhizobium fredii NGR234]
          Length = 388

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 110/351 (31%), Gaps = 8/351 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++   +  L        P L+ + + +   P+      +   S     + 
Sbjct: 10  LQRQIFFWLLVLAAFIAFLMVFSSILLPFLAGMALAYFLDPVADRLQ-RLGLSRLMATIA 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + LF + L+ +      +  + + K+              +           W +
Sbjct: 69  ILVTFIVLFALSLIIVIPLIFTQAADFIQKMPGYVARLQAFVADTTQ----STLVPDWLE 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                               +  + +     GM  LD     I   +  F+   D   + 
Sbjct: 125 AQMAAIKQNSAKLLEQGATFLGTLFQQLWNSGMALLDILSLFIITPVVAFYLLLDWDHMV 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q++DS          ++I+R +   I     G   + +  GL       L G+   + +G
Sbjct: 185 QKVDSWVPRDHVDVVRQIARDMNTTIAGFVRGQGSLCVILGLYYAIGLSLVGLNFGLLIG 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
               +++ IP    +    +++ +       +      +        F+    L+P LVG
Sbjct: 245 FFAGMISFIPYVGSLVGLVLAVGVAVVQFWPDYIWILLVLAVFFTGQFLEGNILQPKLVG 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L+      G +GL +     A I V+ +  I    ++ 
Sbjct: 305 KSVGLHPVWLMFALLAFGALFGFVGLLVAVPAAAAIGVLVRFGIQRYLDSD 355


>gi|302342979|ref|YP_003807508.1| hypothetical protein Deba_1546 [Desulfarculus baarsii DSM 2075]
 gi|301639592|gb|ADK84914.1| protein of unknown function UPF0118 [Desulfarculus baarsii DSM
           2075]
          Length = 366

 Score =  140 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 138/349 (39%), Gaps = 3/349 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +      I+F++  +   ++ F   +  A+++     P+Y   +    +     + +
Sbjct: 10  STSRWFFAACILFVLYCAYLLVEPFLTSIFLAIVLVVVGGPVYDLMLKLTRQRRGLASAL 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + +VPL+ +      +  +L + V            + S +       +   +
Sbjct: 70  TCLLFILIIVVPLVLITGVITSQALDLYNTVSAMLAGNSLSEMFNSGMGRLGPFLDKLEE 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           H    +   +           + +    +       +  +    M+   F+   DG S++
Sbjct: 130 HTGITRMDILQHAAEALKYVSNLLYSNLTDLLRGATNLAIGFALMMFVAFYLLMDGQSMA 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q+   L   L      +I   +   +R+T  G   +A+ +G   G  + + GVP  +  G
Sbjct: 190 QKAIRLSP-LPADTTNQIRDDILSTLRTTMRGTVFLAVIQGTAGGLGFGVFGVPHALFWG 248

Query: 246 VITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +    +++P     + F     YL++ G++F    + +W      I D  LRP L+GG 
Sbjct: 249 TVMVFASVVPLVGTALLFIPAGTYLILSGDVFQGVGVMIWCEASQVICDNFLRPRLIGGG 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +  L TFF ++GG+   G++GL +GP+++A++  + +       ++ 
Sbjct: 309 -NIHPLLTFFSVLGGLSVFGMVGLILGPLVLAVLISLLEVYEHYFMDSP 356


>gi|296112637|ref|YP_003626575.1| hypothetical protein MCR_0410 [Moraxella catarrhalis RH4]
 gi|295920331|gb|ADG60682.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
 gi|326560897|gb|EGE11262.1| hypothetical protein E9G_03549 [Moraxella catarrhalis 7169]
 gi|326563867|gb|EGE14118.1| hypothetical protein E9M_02983 [Moraxella catarrhalis 46P47B1]
 gi|326566876|gb|EGE17015.1| hypothetical protein E9K_01168 [Moraxella catarrhalis 103P14B1]
 gi|326569796|gb|EGE19846.1| hypothetical protein E9U_05771 [Moraxella catarrhalis BC8]
 gi|326571292|gb|EGE21314.1| hypothetical protein E9Q_00168 [Moraxella catarrhalis BC1]
 gi|326571600|gb|EGE21615.1| hypothetical protein E9S_03234 [Moraxella catarrhalis BC7]
 gi|326575122|gb|EGE25050.1| hypothetical protein E9W_03963 [Moraxella catarrhalis CO72]
 gi|326576792|gb|EGE26699.1| hypothetical protein E9Y_02270 [Moraxella catarrhalis 101P30B1]
 gi|326577531|gb|EGE27408.1| hypothetical protein EA1_02057 [Moraxella catarrhalis O35E]
          Length = 390

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 147/330 (44%), Gaps = 3/330 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               ++ F  P L A I+ + ++PIY+ F +K   S +F A + T  +  +  VPL+   
Sbjct: 27  CFKVVRFFIVPALWAGILAYVTFPIYTFFHTKVRLSPSFSAFLMTFCISLMIGVPLIVGV 86

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +Y   E+   V  V    +        L      +       K      +    +     
Sbjct: 87  FYLQHEVLSFVGMV---IRRLQAGYLDLPSQIKDLPVIGQTIKDTLWEINKNPETTMEAV 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +     +        L     +   ++ LFFFYRDG S+ +Q+     ++       
Sbjct: 144 RAWVQSHLYYGKMAFDAVLKNLAKLGMALMTLFFFYRDGKSLVRQIRQAMRNIIGDRIDD 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               V    ++   G+ + A+ + ++ G  Y     P+ + L +IT ++A+IP G P ++
Sbjct: 204 YIDSVGATTQAVVYGIGLTALAQAILAGMGYAFTNAPNPILLTLITFVVALIPFGTPFAW 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+++LL +G+      L LWG + +  VD  +RP ++ G  K+PF+  F G++GG+  
Sbjct: 264 GGVAVWLLSQGHTTEGIGLGLWGILVISWVDNLIRPIVISGATKIPFIIIFIGVLGGLTA 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G +GLFIGPV++A+   +W+E I   K  
Sbjct: 324 FGFVGLFIGPVVLAIGLAVWREWISQHKNE 353


>gi|257420008|ref|ZP_05597002.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257161836|gb|EEU91796.1| conserved hypothetical protein [Enterococcus faecalis T11]
          Length = 394

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 55  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 114 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 174 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 230 VLAEVNDQVASYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 290 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 350 FGIVGVILGIPVYAAAKVIITHIFEWYQ 377


>gi|261364622|ref|ZP_05977505.1| acetyltransferase, GNAT family [Neisseria mucosa ATCC 25996]
 gi|288567211|gb|EFC88771.1| acetyltransferase, GNAT family [Neisseria mucosa ATCC 25996]
          Length = 356

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 132/346 (38%), Gaps = 8/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   ++   +  LY L     P + A ++ +   P+      K+       ++I  V 
Sbjct: 12  WIIMGCVIAAFVWLLYALGDILTPFIVAAVLAYVLNPLVEWLQKKR-IKRAPASMIVMVL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L +  +L +    + +   +VS++                +P    A+  + +    
Sbjct: 71  ALLLLLSLMLIIVPMLINQFNNMVSRIPQIVDFTQNKL-----LPWLNNAAGDYMQIDQE 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                + S T   +N +        R     +    ++I + + L++F  D    S  + 
Sbjct: 126 SVIAWLQSHTGELSNTLKAWMPTLMRQSGNVISGMSNLILLPLLLYYFLLDWKRWSYGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 ALVPRRFIDTYTRITSNMDEVLGEFLRGQLMVMLIMGLVYGVGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++    +           +++  AI  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATVAALLQFSTWNGLIMVWVVFAIGQFLESFIVTPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 F L+   + MG +G+  G  L A+  V+ +E + A   ++
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVNAYFHSR 351


>gi|194335494|ref|YP_002017288.1| protein of unknown function UPF0118 [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307971|gb|ACF42671.1| protein of unknown function UPF0118 [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 363

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 141/357 (39%), Gaps = 6/357 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   Q I+  +++ I +  +  ++ F   ++ A +    + P+++ F    +   +  A
Sbjct: 3   SIKTNQLILLVLLLVISVTFVAMIRYFLMAIVLAALFSALAMPVFNRFERWFKGRKSLSA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  ++++ +  +P   L      +   +    V   Q  I  P         +      
Sbjct: 63  SMTMLTLLLIVFLPFAALLGIVAKQAIRISRIAVPWVQQQILEPGAFDQQLRSLSFYPE- 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L   ++          ++    +    S F    +         +  +FFF RDG  
Sbjct: 122 ---LLLYRTEIFQKVGEFASSTGTMLFNTISTFTYSAVSDLFLFFLFLYTMFFFIRDGKQ 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +     S    L      ++      V R+T  G  ++   +G + G A   AG+ S + 
Sbjct: 179 LLAHFLSYLP-LRQTDQNRLLDKFISVTRATIKGTMVVGAVQGSLAGLALHFAGIDSALF 237

Query: 244 LGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G I ++ +++P     + +    IYL   G    A  + L+ +I +  +D  LRP L+G
Sbjct: 238 WGTIMSLFSILPVLGSALVWVPAVIYLAATGQYPQAIGVLLFCSIVVGQIDNILRPMLIG 297

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++P L  FFG +GG+   G+ G  +GP++ AL   IW+      KE   +I S+
Sbjct: 298 RDTQMPELLIFFGTLGGISLFGVFGFILGPIVAALFMTIWEMYGETFKEYLSEIKSD 354


>gi|322832729|ref|YP_004212756.1| hypothetical protein Rahaq_2014 [Rahnella sp. Y9602]
 gi|321167930|gb|ADW73629.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 369

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 140/354 (39%), Gaps = 4/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + L     L+ +++ VL A+I+     P+ +       + +  ++++  +
Sbjct: 8   KGFFIAILFIVTLAFFDVLRPYYSSVLWAIILAVIFNPLKNRLKQVVGDRNGVVSLLTVL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +   PL  +     LE   + +K+         +           WA    + H  
Sbjct: 68  IICLIVFTPLAIITSSLALEFNAVYTKLQGNQTQLPVILADFIHHLPR-WARHFLSDHDL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  ++       G     + +    M+  LFF  +DG  +    
Sbjct: 127 DSTAEIQKKLSDVALQGSQYLAGSVFVIGKSTFGFVVGFGIMLYILFFLIKDGAYLVNLT 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +    L       +      V R+T  G  ++A+ +G + G A+++AG+   +  G + 
Sbjct: 187 LATLP-LSRYVKHHLFMKFAAVSRATVKGTVVVAVVQGALGGIAFYIAGLDGSLLWGALM 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +   +IY    G ++    +  +  + + IVD  LRP LVG   K+
Sbjct: 246 AFLSIIPAVGSAIIWVPAAIYFFASGMLWQGIFIVAFFVVVIGIVDNVLRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           P        +GG+   G+ G  IGP++ AL    W        + N ++I+ +F
Sbjct: 306 PDYLILVTTLGGMEVYGINGFVIGPLIAALFIACWNILSGRDHQNNTDEINEDF 359


>gi|222150878|ref|YP_002560031.1| hypothetical protein MCCL_0628 [Macrococcus caseolyticus JCSC5402]
 gi|222120000|dbj|BAH17335.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 376

 Score =  140 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 97/320 (30%), Gaps = 10/320 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P+L    + +   P       K+         +  +++  +  +   F+      +   
Sbjct: 52  LPLLLGGFLYYIVVPFQDKLEEKRHLKRWQSVTLIMIALCLIIGLLFSFVGPIVSKQTNN 111

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +       +                  +      L       I +           I  
Sbjct: 112 FIHNYPAIQREFQSYVS----------LALDQRDKLPENVKDGINNGIEKLNEYSGKIVT 161

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A  F   F+     +I +   L +  +D       + +        +   + + + K +
Sbjct: 162 NAFSFITQFISTLFLLILVPFFLIYMLKDHDRFVPFVSAPFTGKRKVFVVNLFKDIDKTL 221

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           RS   G   ++I  GL+L + Y + G+   V L +   +  +IP   P      +I + +
Sbjct: 222 RSYIQGQVTVSIILGLLLLAGYLVIGLDYAVILAMWGMVTNLIPFLGPYMAVIPAIIIAL 281

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +   A  + +   +   +    + P ++G  + +  L     ++      G   + + 
Sbjct: 282 IQDPVMAIYVIIIMFVAQQLEGNVITPNIMGKTLNMHPLTIITVILAAGNLGGFFAILVA 341

Query: 332 PVLMALIAVIWKESIMAIKE 351
               A++  I +   M  +E
Sbjct: 342 VPTYAVLKTIVRNFYMHRQE 361


>gi|258542772|ref|YP_003188205.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633850|dbj|BAH99825.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636909|dbj|BAI02878.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639962|dbj|BAI05924.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256643018|dbj|BAI08973.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256646073|dbj|BAI12021.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256649126|dbj|BAI15067.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256652113|dbj|BAI18047.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655170|dbj|BAI21097.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 390

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 102/346 (29%), Positives = 166/346 (47%), Gaps = 6/346 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SS 59
           + +    +     + +FI+ V++Y ++GF   +    +    +WP+Y+   +K     S 
Sbjct: 40  QRSRRGQEMARTVLALFIVGVAVYTIQGFLPALAWGSVFAIATWPLYTRACNKWPHAASG 99

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T L ++ T ++  LF++PL  +    + E +  +  V  A ++G+PVP  +  +P G  A
Sbjct: 100 TLLPLLFTAAMALLFVIPLTLVTLEAVGEAQSALEWVSHAREYGVPVPDAIHRLPFGSSA 159

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W +               L + G+          G           F I+ LFF Y+
Sbjct: 160 ISKWWEAHLSDPRDLSGMLGNLDSKGVA----VTRAVGSQVAHRATLFCFSILTLFFLYK 215

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG S+ +Q   +    F    + + R +   I  +  G+ ++ IGEGL+LG  Y  A  P
Sbjct: 216 DGLSVIRQCRVVSCRAFGKRGESVGRQIVASIHGSVQGLVLVGIGEGLLLGVVYVFAHAP 275

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                GVITA+ AMIP  A I+   VS+ +L++G+   A   F  GA+ +F  D  +RP 
Sbjct: 276 HPALFGVITAVAAMIPFCAMIAVGLVSLLILVQGSSVAAITTFCIGAVIIFTADHFIRPA 335

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+GG  KLPFL    G++GG  T GL+GLFIGP  MA + ++W   
Sbjct: 336 LIGGSTKLPFLWVLLGILGGAETWGLIGLFIGPAAMAALNLLWCRW 381


>gi|189501154|ref|YP_001960624.1| hypothetical protein Cphamn1_2238 [Chlorobium phaeobacteroides BS1]
 gi|189496595|gb|ACE05143.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           BS1]
          Length = 379

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 6/330 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  +  F   +L A I    + P++  F S      +  + +  +++  + I PLL L 
Sbjct: 34  FISMIYDFLMVILIAAIFSGLAMPLFRWFESLFRGRRSISSAMTILTMALILIFPLLALL 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E  ++   V    +  +  P    DI   +  SE   +         +     L 
Sbjct: 94  GIVAAEAIKVSRSVGPWIEQRVEQPTAFDDIFSSLPYSETIIQ----YSDEILQRLGELV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N   F+    S F +  +     +      +FFF +DG  + + +             +
Sbjct: 150 GNMSTFLFENLSSFTLSTVHTLFMMFVFFYTMFFFLKDGRDMLESVLYYLPLGERDQ-SR 208

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PIS 261
           +      V  +T  G  +I I +G + G A  +AG+ S +  G +  ++++IP     + 
Sbjct: 209 MLDKFTSVTGATIRGTFVIGILQGTLAGLALKVAGIESAIFWGAVMTVLSIIPIIGSGLV 268

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +    +YL   G   +AT L L+  + +  VD  LRP LVG   K+  L  FFG  GG+ 
Sbjct: 269 WGPAVLYLYATGEYVSATGLLLFCGLLVSSVDNILRPILVGRDTKMHELLIFFGTFGGIS 328

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             G+ G  +GPV+ AL   +W+      K+
Sbjct: 329 LFGISGFIVGPVIAALFITVWEIYGETFKD 358


>gi|90580617|ref|ZP_01236422.1| putative permease [Vibrio angustum S14]
 gi|90438275|gb|EAS63461.1| putative permease [Photobacterium angustum S14]
          Length = 361

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/353 (19%), Positives = 143/353 (40%), Gaps = 2/353 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   +      S   ++ +  P++ A II     P++   ++     +   A+++ 
Sbjct: 10  RHWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSC 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPGGMWASELWTKH 126
             +  + ++PLL +F   + +   +  +       G P   +        ++  + ++  
Sbjct: 70  FVLTVIIVIPLLVVFSSIVHQGTTVSKESYQWITSGGPKELFAHPYAQKVLFYIDKYSPF 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 + I       +         ++R         ++ + M+  LFF  RD   +  
Sbjct: 130 HDFDPQVIIQKIATTASQVGSQAINISARILGDATSILVNFMMMLFVLFFLLRDNDKMIA 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +    I   V +V +S  LG  + A+ +GL  G A WL G P      +
Sbjct: 190 AIRHVIP-LSRSQEDAIMEEVEQVAKSAVLGSFLTAVAQGLAGGFAMWLCGFPGLFWGSM 248

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +     +   G  + +   S+YLL+ G    A  L  WG + +  +D  +RP L+ G   
Sbjct: 249 MAFASLIPVVGTALIWLPASLYLLLVGQWEWALFLAGWGVLVVGSIDNVVRPLLMQGSSS 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +  L  FF ++GG++  GL+G+  GP++  +  V++K   +  K+  E+  SN
Sbjct: 309 MNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMYEVEFKDFLEQQDSN 361


>gi|238061336|ref|ZP_04606045.1| hypothetical protein MCAG_02302 [Micromonospora sp. ATCC 39149]
 gi|237883147|gb|EEP71975.1| hypothetical protein MCAG_02302 [Micromonospora sp. ATCC 39149]
          Length = 459

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 105/349 (30%), Gaps = 18/349 (5%)

Query: 12  MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++ ++  +L      +     P+  A+++     P     +  +    +    +  
Sbjct: 114 WRLIVIGVVFWALLKVVATISIVIIPLAVAMLLSALLAPAVGWLLRAR-FPRSLATAVVL 172

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  +   +  L  +    +  + EL  K     +                W         
Sbjct: 173 VGGLAAVVGTLTLVVNEFIQGVPELSKKSSEGVRQIQD------------WLKTGPLHLS 220

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  I        N  +     A        +    I+ ++ A FFF RDG  I + 
Sbjct: 221 DSQLDRYIEEAPTWINNNTERFTSGAVSTAATLAEVLTGIVLVLFATFFFLRDGNRIWRF 280

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L             R   + + +      ++A  + + +G+   +  +P    L  +
Sbjct: 281 LVRLLPVAARWKVDDAGRASWETLGAYVRATVLVAFIDAVGIGTFLVIFDIPFAFPLAAL 340

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP     +S     +  L+      A  +         +    L+P ++G  + 
Sbjct: 341 VFLGAFIPIVGAALSGGVAVLVALVDSGPVTALIILGVVIGVQQVEGHVLQPLIMGRAVA 400

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  L    G+  GV   G+ G  +   L+A++    +        +   
Sbjct: 401 IHPLAVIIGIAAGVVLAGITGALVSVPLIAVLNTAVRRLAARTVPDTPP 449


>gi|311113049|ref|YP_003984271.1| integral membrane protein [Rothia dentocariosa ATCC 17931]
 gi|310944543|gb|ADP40837.1| integral membrane protein [Rothia dentocariosa ATCC 17931]
          Length = 448

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 113/352 (32%), Gaps = 16/352 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW---PIYSSFISKKEESSTFLAVIATV 68
            R +++   +  ++      + ++ + ++              + K    +     IA +
Sbjct: 48  WRLIVVVGAVWLVWQGLSKVSLLIISAMVAALLAALLSPAVYAMRKHGIRAGGATAIAEL 107

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++      L       +     L +  +   Q  +   + +    G    +++  +   
Sbjct: 108 GMILGIAALLALTGQQLVRGFVSLTNNAIQGYQQLVDWLKGMGYELGADQLNQILNQI-- 165

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +N    + R  S  G    ++   ++  +  L FF  +G  I   +
Sbjct: 166 ----------EQAVSNNPSTVLRSVSEVGSTAAEFATGVLITLFTLVFFLMEGERIWLFI 215

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             R   K + +      ++A  + + +G    + GVP  + LGV+ 
Sbjct: 216 VKLFPQQARDAVNGAGRAGWKSLGAYVRVQILVAAIDAVGIGVGAAILGVPLAIPLGVLV 275

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP     IS     +  L+      A  +     +   +    L+P ++G  + L
Sbjct: 276 FLGSFIPVIGALISGAVAVLLALVALGPVQALIMIGIVLLVQQLESHILQPLIMGKAVSL 335

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L   F + GG    G  G      ++A++  + +       EN  ++   
Sbjct: 336 HPLAVIFAVAGGSMIFGAAGALFAVPVLAVVNSVVRYLAARQWENDPELRRE 387


>gi|114706428|ref|ZP_01439330.1| hypothetical protein FP2506_01550 [Fulvimarina pelagi HTCC2506]
 gi|114538289|gb|EAU41411.1| hypothetical protein FP2506_01550 [Fulvimarina pelagi HTCC2506]
          Length = 400

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 105/345 (30%), Gaps = 11/345 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P+  +  +   ++   LY    F  PV+ A++      PI      + +      A    
Sbjct: 33  PRWAVIGIFFMMLFGGLYLTASFVLPVIIAVLFALVMSPIVRFLRRRLKIWEPVSAFFLV 92

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  +         L       +          ++    V      +              
Sbjct: 93  IGSLTFLTFGFYMLSDPIANIISNAPEYARAVDKEIRTVQARFQRLQEASENVGEGGTDD 152

Query: 128 SHP--------QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                      Q              +   P               S++F ++ LFF   
Sbjct: 153 GVNRLPPSPFAQPEPEPENDDEPQEVVVKNPGLVDNAANELPTILASVLFALVFLFFLLA 212

Query: 180 DGFSISQQLDSLGEHL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            G     +L  L   L        I+  + + +   FL +T+I  G G+ +G+  W  G+
Sbjct: 213 SGDMFYAKLVRLMPTLEDKKRALHIAHDIERELSRYFLTITLINTGLGIAVGTGLWYVGM 272

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTL 296
           PS V  G +  ++  IP    +    +     L   G++  A    L       I  + L
Sbjct: 273 PSPVVFGALATLLNFIPYLGALFGMGLVGVIALAEFGSLAEAAIPVLIYLAVTTIEGQFL 332

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            P +VG  +++     F  +       G+LG+F+   LM  I V 
Sbjct: 333 TPMIVGRRLQMNAAAVFLSVAFWGWIWGVLGMFLAVPLMVAIKVF 377


>gi|302554573|ref|ZP_07306915.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
 gi|302472191|gb|EFL35284.1| membrane protein [Streptomyces viridochromogenes DSM 40736]
          Length = 388

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/357 (11%), Positives = 105/357 (29%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +  +      + + L G    +L A  +     P  S   S+     
Sbjct: 2   PRWLPRAMVLALTLVAVFQLGSWAFHQLTGLLINILIAFFLALAIEPAVSWMASR-GVRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  + V+ +    +  L      ++ +++          I               
Sbjct: 61  GLATFVVFIGVIIVAAGFVTLLGSILADQIIKMIEGFPAYLDSVIHWINTH--------- 111

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +   L      + L  +    N +              +     ++ + +  F+F  
Sbjct: 112 ---FNTDLKRVDIQEGLLRSDWLRNYVQNSATGVLDVSAQVIGGLFQLLTIALFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + + S+      A   +   I             ++A+  G+          VP
Sbjct: 169 DGPRLRRAICSVLPPARQAEVLRAWEIAVNKTGGYIYSRGLMALISGVAHFVLLQALDVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               L V   +++  IP        A+ + +    + + A  + ++  +     +  L+P
Sbjct: 229 YAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLMFVVVYQQFENYVLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +    +F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTSRTVDIHPAVSFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|154687289|ref|YP_001422450.1| YueF [Bacillus amyloliquefaciens FZB42]
 gi|154353140|gb|ABS75219.1| YueF [Bacillus amyloliquefaciens FZB42]
          Length = 450

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 108/332 (32%), Gaps = 6/332 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI      F+   F P+L + I+ F   PI      K     T   ++  +  + L  
Sbjct: 108 VSFIFQPFFGFITTLFFPILISGILFFIFNPIVRLLEKK--IPRTLAILLIYLVFIGLIA 165

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +      ++  L++           +   LS      W                 
Sbjct: 166 FMFTAIGPIVASQVTGLINNFPDYIHQIQVLTAQLSHSKWFTW----MMTQDYVSIEKIQ 221

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S T    +    I    S    +  +  L +I +   LF+  +DG         +    
Sbjct: 222 QSLTGFLQSLPQNITASLSAVFGVVTNITLVVITVPFILFYMLKDGRRFPLLAVKILPTS 281

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A  +KI   +   + + F G  +I +  G      Y + G+   + LG++ A+  +IP
Sbjct: 282 YRAEGRKIFNDLYVTLAAYFQGQLLICLFVGTACFIGYSIIGLQYALILGMVIAVTNIIP 341

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +    +   A    +   +   +    L P ++G  +    L     
Sbjct: 342 YLGPFLGAAPAVIIAFMDSPAKALFAVIVVVVVQQLDGNLLSPLVIGKRLNTHPLTIILL 401

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L+G     G+L + +   + A++       + 
Sbjct: 402 LIGAGSFGGILAMILAVPVYAVLKAFVLNIVR 433


>gi|139436945|ref|ZP_01771105.1| Hypothetical protein COLAER_00078 [Collinsella aerofaciens ATCC
           25986]
 gi|133776592|gb|EBA40412.1| Hypothetical protein COLAER_00078 [Collinsella aerofaciens ATCC
           25986]
          Length = 469

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 129/351 (36%), Gaps = 6/351 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVL----SALIIGFTSWPIYSSFISKKE 56
           +R+T +    I   +   +I   ++ L G  APV+       II F   PI +       
Sbjct: 12  LRDTRILTLRIWAVVGCIVIAAVIFNLMGILAPVIEFLAVGSIIAFVMSPITNWLEHH-G 70

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            +    +++A + V+ + +  +  L      ++ E++S++    +        +      
Sbjct: 71  VNRGIGSLVALIVVVAVLVGVVCILSPILFGQIMEVLSRLPEQLRVAGGDLNEMISHAKT 130

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  + L      +  SL  ++  ++     + + R               I   ++  ++
Sbjct: 131 LNNTPLKEYLDDNLSSLVTVASKYVSQIAAE-LGRGVFPLITNTASQLFVIFLGLVLAYW 189

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   +  ++ ++        ++ +  I+ + +     GM + +I  G +    + + 
Sbjct: 190 MACDYPRMHHEICTIIGQEKETSYRFMVAILSRSVGGYMRGMVVTSICGGFLAFIGFMII 249

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G P    + + T IM ++P   P    A++  L    +   A    +   I   + D  +
Sbjct: 250 GHPYAALMAIFTGIMHLVPVVGPWVSAAIATVLGFMFSPMLALWTLIVTMIAQNVTDNVI 309

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            P ++   +++  + +   LV G   MG +G+ I   L A +  I+     
Sbjct: 310 SPKVMQSSVQVHPIMSLTALVIGSALMGPIGMIIAIPLCAALKGIFVYYFE 360


>gi|158423889|ref|YP_001525181.1| putative membrane transport protein [Azorhizobium caulinodans ORS
           571]
 gi|158330778|dbj|BAF88263.1| putative membrane transport protein [Azorhizobium caulinodans ORS
           571]
          Length = 618

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 51/361 (14%), Positives = 102/361 (28%), Gaps = 24/361 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +      + ++    ++  +Y  +  F PV  A+++ F   P+       +   +  +
Sbjct: 12  RPVHRESRTLVFLGALALIAVVYIGREVFVPVALAVLLSFVLSPVLLVLRRLRIPRTLGV 71

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +  ++ + L       L      ++ +L S +     +     R L     G    E 
Sbjct: 72  AGVVMLTFIGLLA-----LGAVVATQVGQLASDLPHYQANVRDKIRDLKSTASGSATMER 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPR-----------------FASRFGMIFLDYCL 165
               L    S     +   K                               G   L    
Sbjct: 127 VAGMLQDLSSELDRPDPQPKFQLDAAAAAQRPIPVEIRAPELGTLAMLRSLGEPLLHPLA 186

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +   + I L F       +  +   L                   +    L   ++  G 
Sbjct: 187 TTGIIFIFLIFILLQREDLRNRFIRLAGAHDIQRTTAALDDAGARLSRFLLTQVVLNAGF 246

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFL 283
           G V+G    L GVPS +  G++ A++  +P    I    +   L +             +
Sbjct: 247 GCVIGLGLGLIGVPSAMLWGLLAAVLRFVPYIGAIIAALLPSALALAVDPGWSMVVWCIV 306

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             A+   +V   + P L G    L  +             G +GL +   L   + V+ +
Sbjct: 307 LFAVVEPVVGHIIEPLLYGRSTGLSPVAVIASATFWTWLWGPIGLVLATPLTLCLVVLGR 366

Query: 344 E 344
            
Sbjct: 367 H 367


>gi|303237018|ref|ZP_07323590.1| putative membrane protein [Prevotella disiens FB035-09AN]
 gi|302482798|gb|EFL45821.1| putative membrane protein [Prevotella disiens FB035-09AN]
          Length = 376

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 122/354 (34%), Gaps = 13/354 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           + ++   ++F IL  + +L     P   A ++ +   P+ +    K +        +I  
Sbjct: 13  RWVLIAALVFSILYIVNYLSHVLLPFFIAWLLAYLLNPVVNFVQHKMKVKVRALAVIITM 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ +    +  +    + + ++L +      Q   P     + I   +          
Sbjct: 73  LLVVAIITGVMYTIIPPMVDQFEKLGAVANRYVQQNTPSNNLTAWIKDWIQEYLPQINEY 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +      +  +                   +   ++ +  ++ LFF   D   + + 
Sbjct: 133 FKSKDFTETIKNAIPKLFT------VVGQTASIVLSIVASLITLLYLFFILLDYDYLVKN 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +      ++WK + + V   +     G  ++A+  G++    + + G P  + +G++
Sbjct: 187 FVRIFPKKHRSFWKDLMQDVETEMNKYIRGQGLVALTMGILFCIGFTIIGFPMAIGMGIL 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             I+ +IP    ++   ++   L       +          L  AI   + D  + P ++
Sbjct: 247 IGILTLIPYLHSLALIPMAFLSLLEAADKGQNFWVVFGTAILVFAIIQLLCDLVVTPRIM 306

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G  + L        L      +G +GL I   L  LI   WK  +    ENK+K
Sbjct: 307 GKTMNLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWKRYVTKEDENKQK 360


>gi|322389894|ref|ZP_08063434.1| membrane protein [Streptococcus parasanguinis ATCC 903]
 gi|321143330|gb|EFX38768.1| membrane protein [Streptococcus parasanguinis ATCC 903]
          Length = 391

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +    F      PV+ + ++ +   PI      K      F        +  L I
Sbjct: 42  ITFIFIPIFEFAGAVMLPVIISGLLYYLLNPIVDFLERK-GLKRIFAISFVFFLIAVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +          D            +      +   
Sbjct: 101 WGLAVVIPSVQRQVVSFFHNLPTYLEKANATIDDFLDNRVSSDIKPQLDEITKELSANIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +    ++++         + +        M   +F+  RDG ++   +       
Sbjct: 161 SWASSISGRAVNWVSNLIGVASQVIVALI----IMPFIVFYLLRDGKNLKGHIVRFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++   V   + +   G   +AI   ++    + + G+   V LG+   I+ +IP
Sbjct: 217 IRKSAEQVLSDVNTQLSNYVRGQITVAIVVAIMFIIFFKIIGLRYAVTLGISAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +  A+E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLVAGPEMFIKVLIVFAVEQTIEGRFVSPLVLGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+F+G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVFLGIPVYASAKVVIGAIFEWYK 371


>gi|116334148|ref|YP_795675.1| permease [Lactobacillus brevis ATCC 367]
 gi|116099495|gb|ABJ64644.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 380

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 108/332 (32%), Gaps = 10/332 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVM 71
           I F+      FL   F P+L + ++ +   P+          K   + T    I  + ++
Sbjct: 29  ISFLFSPIGVFLSTIFIPLLLSGVLFYLLNPVVKLLEKIRWKKFHVNRTGAVAIVFLLLI 88

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +   ++L    + ++  LV  +    +    V   L   P             S   
Sbjct: 89  GILVAGGVWLIPRLVNQVSTLVGSIPDFAKSSEAVLAKLMKHPLLQNVD------FSKYL 142

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    +        +  +               ++ I + + LF+  +DG      +   
Sbjct: 143 NQIQSAFAKYAEGFMSGLTTGIGAVIGTVTTVTVTAITVPVMLFYMLKDGERFMPAVQRW 202

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++   + + I     G  +  +  G      Y L G+   + LGV + + 
Sbjct: 203 LPAKHADQTVELLSRMNQTIARYVGGQIVECLFVGTFTAIGYMLFGLKYALLLGVFSGLC 262

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ +    +      + +   +   +    + P ++G  +++  L 
Sbjct: 263 NLIPYVGPYIGILPALIVAFTISTNMVLYVVIVVVVVQQVDGNLVYPNIIGRSLQIHPLT 322

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               L+      GL+G+ +   L A++  + +
Sbjct: 323 IIIILLAAGNIAGLMGMILAIPLYAVVKTVVQ 354


>gi|118478248|ref|YP_895399.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|118417473|gb|ABK85892.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
          Length = 373

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 37  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 96  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 151

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 152 KNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y++  +P    LG+I A   +IP
Sbjct: 212 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 272 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 332 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 369


>gi|330718081|ref|ZP_08312681.1| integral membrane protein [Leuconostoc fallax KCTC 3537]
          Length = 342

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 109/326 (33%), Gaps = 10/326 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKE----ESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P++SA  + +   PI       K            ++  +  + + ++ L  L
Sbjct: 7   FISTVFVPIVSAGFLYYVLKPILGLIEKIKIKGKAIPHRLAVIMTFLLFIGVIVLALALL 66

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +             L+               L+        + +  
Sbjct: 67  VPTLVKEISNLITALPAFVNDLQKFVNELTAERWFRALD------LNVNVDQIKGTVSKY 120

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +                  ++I+ + I LF+   DG  +   L            +
Sbjct: 121 AASVLTGTASTLGVVISTVTSVTINIVTIPIVLFYMLNDGDKLVPTLKKNFASRHADNIE 180

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  + + I     G  I  +  G+ +   Y + G P    L VI  I  ++P   P  
Sbjct: 181 ELTDKMDRTIERYISGQAIEMLFVGIAMAIGYLIIGQPYAWLLAVIAGITNIVPYIGPWL 240

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    ++     + +   I   I    + P ++G  +K+  L     L+    
Sbjct: 241 GVIPALVVASTQSMQQVIFVIIVMTIVQQIDGNFIYPNVIGKSLKIHPLTIMILLMVAGN 300

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
             G++G+ +   + A+I  I K ++ 
Sbjct: 301 LWGIVGMILIVPVYAVIREIVKYALK 326


>gi|289664536|ref|ZP_06486117.1| permease [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289667897|ref|ZP_06488972.1| permease [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 388

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 126/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S     ++  V
Sbjct: 14  RRLKWAAVIVGVLWVVSLLAPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNVAVMLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LF++ L+ L      ++  L+  +       I                +L      
Sbjct: 73  LATLLFVLALMILVPMIERQIMTLIDALPQMRNWAIGTA---IPWLEAKTGMQLMAWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S           +  + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     ++++    V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTVSRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +      + 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHQQYTRSD 358


>gi|264677725|ref|YP_003277631.1| GAF sensor protein [Comamonas testosteroni CNB-2]
 gi|262208237|gb|ACY32335.1| putative GAF sensor protein [Comamonas testosteroni CNB-2]
          Length = 808

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 112/352 (31%), Gaps = 15/352 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + E +   + ++  MI  I++++LYF +    P+  A++ GF   P  S    +      
Sbjct: 16  LAEMLPALRLLIGLMIASIVILALYFGRDMLIPLALAMLFGFLLDPAVSKL-KRWGLPRM 74

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-------I 113
             A++     +       ++L      ++++L + +           R L          
Sbjct: 75  ASAIVVVAFSLAALGGLGMYLGS----QVQQLSADLPTYQSTIRDKLRSLRKSANMPSAW 130

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G         K ++   + +   +                ++     +   +   +++ 
Sbjct: 131 DGVFKTYNTVEKEIASVDNARARVQKVEVQPPESKPTTRMLQWLGRIAEPVTTAGIVLLF 190

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +     D   +  +L  L                 + I        I+ +  G+ L    
Sbjct: 191 VILILLDRDELRDRLLRLVGGNL-NVATDALDEASQRIGKYLRMQFIVNVSYGVPLAMGL 249

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV- 292
            L GVP  +  GV+ AIM  +P   P+      + L    +      L   G I L  + 
Sbjct: 250 LLIGVPGAILWGVLGAIMRFVPYVGPMMSAVFPLALAFAVDPSWDMFLMTLGLILLLELI 309

Query: 293 -DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  + P+L G    L  L             G +GL +   L   + V+ +
Sbjct: 310 SNNVIEPWLYGSSTGLSTLSIIVAATFWTALWGPIGLILSTPLTVCLLVLGR 361


>gi|300780351|ref|ZP_07090207.1| permease [Corynebacterium genitalium ATCC 33030]
 gi|300534461|gb|EFK55520.1| permease [Corynebacterium genitalium ATCC 33030]
          Length = 506

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 92/323 (28%), Gaps = 17/323 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++++ I    L+ + GF      P+L ALI     WP      +  +        I
Sbjct: 76  WALRFIVVVIATAFLFKIIGFVWVGVLPLLLALIFCTVLWPPVRWLRNH-KVPGALAVFI 134

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++           +      +  EL  +     Q  +               +     
Sbjct: 135 VLLAFFGAIGGLFAAMAPTIKTQSVELYHQAEEGVQRILDWVE-----------TSAPFD 183

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I             I                ++  M++  FFF +DG    
Sbjct: 184 VDTSQIEQAISQAGDFVRGQASNIASGVVTGVGAVASIGTTLALMLVLTFFFLKDGDRFL 243

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L          +  ++       +        I+++ + + +G    L GVP    L 
Sbjct: 244 PWLRKYTGVKAGWHLTEVLMRSWNTLSGFIRTQAIVSLVDAIFIGLGLVLLGVPLAPVLA 303

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT     IP     +      +  L+ G +  A  +     +   +    L+P L    
Sbjct: 304 VITFFGGFIPIIGAFTAGALAVVVALVSGGVTKALLVLALVILVQQLEGNVLQPVLQSQA 363

Query: 305 IKLPFLPTFFGLVGGVRTMGLLG 327
           + L        +  G    G++G
Sbjct: 364 MGLHAAIVLLAVAVGGTVFGIIG 386


>gi|222151264|ref|YP_002560420.1| hypothetical protein MCCL_1017 [Macrococcus caseolyticus JCSC5402]
 gi|222120389|dbj|BAH17724.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 380

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 123/337 (36%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +        PV+ A I+ +   P+ +     +  +  +  +I   +++ LF 
Sbjct: 37  ISFIFKPFIVIFNTVIGPVILAFILYYLLNPLVNLMERYR-INRLWGIIILIATIISLFA 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + + +L     +++  LV        H +     LS+          + +++    +  +
Sbjct: 96  LLITWLIPVIEVQVTGLVHNAPDYLNHLLKDFNRLSN----DSKFAPFLQNIQEWVNTNL 151

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     +                  + I+     LFF  +DG      +  L    
Sbjct: 152 SDLPKKVGEYLGNFSTRLRSVVDTVASVAIVIMTFPFVLFFLLKDGEQFKNYVLKLTPPK 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F      I   +   + S   G   +A   G++L   Y + G+   + L  I A+ +++P
Sbjct: 212 FRKDLHDILDKMNVQVGSYIQGQMFVAFCIGVLLFIGYMIIGLEYALILACIAAVTSVVP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+   + +I + +  + F    L +      F+    + P ++G  +++  L   F 
Sbjct: 272 YLGPMIAISPAIIIALVDSPFMLLKLAIVWMAVQFLEGHFISPNIMGKTMQIHPLTIIFV 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     +GL+G+ +G  L A++ V+ +      K+ 
Sbjct: 332 LLCAGNLLGLIGVILGIPLYAILKVLTQYIFDKFKKR 368


>gi|229018227|ref|ZP_04175099.1| hypothetical protein bcere0030_27580 [Bacillus cereus AH1273]
 gi|229024411|ref|ZP_04180862.1| hypothetical protein bcere0029_27280 [Bacillus cereus AH1272]
 gi|228736872|gb|EEL87416.1| hypothetical protein bcere0029_27280 [Bacillus cereus AH1272]
 gi|228742995|gb|EEL93123.1| hypothetical protein bcere0030_27580 [Bacillus cereus AH1273]
          Length = 373

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 124/338 (36%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 37  ISFLFQPIGIFISTLFFPILIALFLYFIFNPLLVFLENK-KVPRGLAILLLYLFIITLTG 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S      +   +   I
Sbjct: 96  VAIGVVVPTISQQLMDLVKNMPTYIKEGKVYIQDLSHHRLFEWLSTQNYVSIETIEKNAI 155

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +       +   A+    I  +  L I  +   LF+ ++DG +   +  S+    
Sbjct: 156 EYLKEIPNT----LTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSVLPES 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G    + Y + G+P    LG+I A+  +IP
Sbjct: 212 YREEGLRIIKETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAALTNIIP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 272 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 332 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 369


>gi|291297772|ref|YP_003509050.1| hypothetical protein Snas_0238 [Stackebrandtia nassauensis DSM
           44728]
 gi|290566992|gb|ADD39957.1| protein of unknown function UPF0118 [Stackebrandtia nassauensis DSM
           44728]
          Length = 421

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 110/331 (33%), Gaps = 10/331 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +  +L     L     P+L +L++     P+ +  + K     +  A I  +
Sbjct: 77  RALVIAAAVVGVLYLASILSFVVIPILVSLLLAAMLQPLVALLV-KAHVPRSIAAAIVLI 135

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +      L  +    +  +  LV  V     +     ++          +  +++  +
Sbjct: 136 AGIAAVAGVLTLVINQFVANIDTLVDSVQKGLLNLQDWAKYGPLHLEQKQINNFFSEFQT 195

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +++ L    ++ +         I  +       ++   FFF RDG  I   L
Sbjct: 196 VITDWLSDNQSILAGTAVESLG--------IVFNILTGAFLVLFTTFFFMRDGRRIWTFL 247

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +                 + + S      ++A  + + +G+      +   + L  + 
Sbjct: 248 VRMLPERAHEPLLHAGFASWRTLVSFVRATILVAFIDAVGIGAWLMFLDIELAIPLAALV 307

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     +S     +  L+  +   A  +     +   +    L+P L+G  + +
Sbjct: 308 FLGAFIPIIGATVSGIVAVLVALVGDDWVTALLVLAGVIVVQQVEGHLLQPLLMGRAVSV 367

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     +  GV   G +G  I   ++A++
Sbjct: 368 HPLAIVLAVAAGVVLAGPIGALIAVPIVAVL 398


>gi|331269100|ref|YP_004395592.1| permease [Clostridium botulinum BKT015925]
 gi|329125650|gb|AEB75595.1| permease [Clostridium botulinum BKT015925]
          Length = 368

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 117/336 (34%), Gaps = 1/336 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I+  S   +     P   A  I +   PI   F  K +    F  +I  + ++    + +
Sbjct: 30  ILAGSFGVILAILTPFFWAFGIAYILNPIMVYFERKFKFKRNFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  + +L + +    +       + +     +  +    +  +   S    + 
Sbjct: 90  TIISPAIINNVDQLANNIPTYVRKTQTWF-YETITRFNLSNNTTLIQFANKSLSSITATL 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           T    + ++     A      FL      I  +  L        +I   L SL +     
Sbjct: 149 TASLNSFLNVALTKAIDITSSFLKMIFGFIISVYILKDKEVFQKNIKDFLYSLFKKKSVD 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +      V  +     +G +I ++  GL+      +   P  + + ++  +  MIP   
Sbjct: 209 SFLIFGCEVNTIFSQYIIGKSIDSLIIGLLCAIGLGILKTPYVLLISLLVGVTNMIPYFG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ + +  +   A  +F++  +        L P ++G  + +        +  
Sbjct: 269 PFIGMIPAVLITLFSSPIKALWVFIFILVLQQFDGWVLGPKILGDKVGVSPFWIILAITV 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  T G+LG+F+G  ++A+I  + ++ ++    NK 
Sbjct: 329 GGGTFGVLGMFLGVPIIAVIKTLLQKFVLNRLNNKN 364


>gi|299530278|ref|ZP_07043703.1| putative GAF sensor protein [Comamonas testosteroni S44]
 gi|298721649|gb|EFI62581.1| putative GAF sensor protein [Comamonas testosteroni S44]
          Length = 808

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 112/352 (31%), Gaps = 15/352 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + E +   + ++  MI  I++++LYF +    P+  A++ GF   P  S    +      
Sbjct: 16  LAEMLPALRLLIGLMIASIVILALYFGRDMLIPLALAMLFGFLLDPAVSKL-KRWGLPRM 74

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-------I 113
             A++     +       ++L      ++++L + +           R L          
Sbjct: 75  ASAIVVVAFSLAALGGLGMYLGS----QVQQLSADLPTYQSTIRDKLRSLRKSANMPSAW 130

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G         K ++   S +   +                ++     +   +   +++ 
Sbjct: 131 DGVFKTYNTVEKEIASVDSARARVQKVEVQPPESKPTTRMLQWLGRIAEPVTTAGIVLLF 190

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +     D   +  +L  L                 + I        I+ +  G+ L    
Sbjct: 191 VILILLDRDELRDRLLRLVGGNL-NVATDALDEASQRIGKYLRMQFIVNVSYGVPLAMGL 249

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV- 292
            L GVP  +  GV+ AIM  +P   P+      + L    +      L   G I L  + 
Sbjct: 250 LLIGVPGAILWGVLGAIMRFVPYVGPMMSAVFPLALAFAVDPSWDMFLMTLGLILLLELI 309

Query: 293 -DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  + P+L G    L  L             G +GL +   L   + V+ +
Sbjct: 310 SNNVIEPWLYGSSTGLSTLSIIVAATFWTALWGPIGLILSTPLTVCLLVLGR 361


>gi|148656415|ref|YP_001276620.1| hypothetical protein RoseRS_2291 [Roseiflexus sp. RS-1]
 gi|148568525|gb|ABQ90670.1| protein of unknown function UPF0118 [Roseiflexus sp. RS-1]
          Length = 424

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 106/355 (29%), Gaps = 11/355 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + ++II   L+  +    P +  L++ +   P    F            +    
Sbjct: 48  RWSLVALALYIIGSMLWSTRPVLIPFVIGLVLAYLMAPAVDFFDRWM--PRWLAILAVYA 105

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                       +    + ++  L+ ++   ++        +           L      
Sbjct: 106 LGFLGIAATFALIIPPLVEQVARLIRQLPSFSE-VQMFVDSVVKQYRDQVPPSLQQPIED 164

Query: 129 HPQSLKILSETFLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
              +L    +  + T                +  + + L  I + I LF+   D      
Sbjct: 165 SLANLLRSLQNNIDTYLQRGGAFLLNQLIQLLNTVTFILGFISLPIWLFYVLYDKQQGRV 224

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV------PS 240
             + L      A +  +  I+  V+     G  I+ +  GL +G       +        
Sbjct: 225 FFNQLVHPRARADFWNVWEIINNVLGGYIRGQIILCVAVGLAVGIGLVGLEMLGFPLGDY 284

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L +I  +   IP   P       + L    +      + +       + +  L P +
Sbjct: 285 VLVLALIAGVTEFIPVLGPTIGAIPGVILGFGISPTAGFAVLILYIAVQQLENSLLVPRI 344

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  + +        ++      GLLG+ +    +A    ++K + + ++ +  +
Sbjct: 345 IGESVGVHPAVLTVAMIVMGTLFGLLGILLAAPAVATTRDLFKYAYLRLEGHSPE 399


>gi|90581674|ref|ZP_01237463.1| putative permease PerM [Vibrio angustum S14]
 gi|90437158|gb|EAS62360.1| putative permease PerM [Vibrio angustum S14]
          Length = 361

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 111/343 (32%), Gaps = 12/343 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +   +I+    +++YF      P+L A+++ +      +   +K     T 
Sbjct: 10  QRRFSDPHAVSLVVILLGGFLTIYFFGSLITPLLVAIVLAYLLEWPVARL-NKLGMPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +    L ++ L  L      ++  L + V             L +         
Sbjct: 69  SVAIVLLVFAGLMVLALFGLVPTIWHQITNLSADVPKMFNDLQIYVSSLPERYPDFVQPA 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  +   +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 QVVDLMNTLREKVLGLGESVVKGSLASLVSLAT--------IGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + L ++          K+   + + I +   G     I  G+     + +  +   
Sbjct: 181 DEMLRTLLNVLP-KNRRLASKVGSEMNQQISNYIRGKVTEIIIVGIASYVTFEVMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V LGV+  +  +IP     + T     + L   G   +   L L   I   +    L P 
Sbjct: 240 VLLGVLVGLSVLIPYIGAAAVTVPVAMVGLFQWGWTPDFWWLLLAYGIIQMLDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    + L  +     ++      G  G+F    L  L+  +W
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342


>gi|299533519|ref|ZP_07046896.1| hypothetical membrane protein [Comamonas testosteroni S44]
 gi|298718477|gb|EFI59457.1| hypothetical membrane protein [Comamonas testosteroni S44]
          Length = 359

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 132/335 (39%), Gaps = 3/335 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ +   +   ++      P++   + +     T  A+   +  + + I+PL  +    
Sbjct: 2   VLEEYAVAIFWGVVFAIVFAPLHRKLLMRMPNKPTLAALATLLISLVMVILPLSLIGLSL 61

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   +  ++   N         + +     W +    K             + +    
Sbjct: 62  IKETAAIYDRISSGNLSAGSYVEQVFNALPS-WLTPWMEKLHLGTLEEIQTKLSNIALQA 120

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                  A   G   L + +    M+  +FF  RDG  +  ++ +    L P + ++++ 
Sbjct: 121 SKLAATKAVGLGQNTLGFVVGFGVMLYLIFFLLRDGKELVARIWAATP-LAPEHKRELAI 179

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
               VIR+T  G   +A  +G + G  +W+ G+   V   V+ A ++++P     + +  
Sbjct: 180 KFITVIRATVKGNLAVAAAQGALGGLIFWILGIQGAVLWAVVMAFLSLLPAVGAGLVWGP 239

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+IY L  G +     L  +G + + +VD  LRP LVG   K+P        +GG+   G
Sbjct: 240 VAIYFLATGAVTKGLILAAYGVLVIGLVDNVLRPLLVGKDTKMPDYVVLISTLGGMALFG 299

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L G  +GP + AL    W+      ++ ++ ++  
Sbjct: 300 LSGFVLGPAIAALFMAAWELFATMQEQEEKLLNRE 334


>gi|261209892|ref|ZP_05924193.1| permease PerM [Vibrio sp. RC341]
 gi|260841078|gb|EEX67603.1| permease PerM [Vibrio sp. RC341]
          Length = 358

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 115/356 (32%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITTLPERFPELAHLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVINNAKNKVLGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMLRMASGILP-RNRKLATKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPPFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +WK      +E  ++
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEPNKE 355


>gi|225568272|ref|ZP_03777297.1| hypothetical protein CLOHYLEM_04346 [Clostridium hylemonae DSM
           15053]
 gi|225162991|gb|EEG75610.1| hypothetical protein CLOHYLEM_04346 [Clostridium hylemonae DSM
           15053]
          Length = 457

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/382 (12%), Positives = 115/382 (30%), Gaps = 30/382 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLK-------------GFFAPVLSALIIGFTSWPIYSS---- 50
            +G+  ++++   ++  + L                  PV+   +  +   PI       
Sbjct: 45  NRGMTAFLVVAASILFYFALLRLTNLSEGFTKIFDVLKPVIYGCVFAYLMNPIVKQVDNY 104

Query: 51  ----FISK-------KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
                  K       ++ S      ++ + +  L I     L       ++ LV  +   
Sbjct: 105 LRPVLEKKIKKHDGARKLSRACGIFLSIIILFVLIITLCNLLIPELYSSIRNLVFTLPGQ 164

Query: 100 NQHGIPVPR--WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
               +       L D   G        +     Q+           + +  +        
Sbjct: 165 LNELVDKLNNVKLEDSTTGALIKTAVEEGTDMLQTWLRTDLLTRANDIMSNLTVGVISII 224

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              ++  + II  I  LF          + + +L +         ++    ++     +G
Sbjct: 225 SEIINALIGIIISIYILFSKETFSRQSKKTVYALMKPEHGNMLLHLATKSNEIFGGFIIG 284

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
             I ++  G++      +  +P  V + VI  +  +IP   P      S  L++  +   
Sbjct: 285 KIIDSLIIGVLCFMGLSILNMPYTVLVSVIIGVTNVIPFFGPYIGAIPSAVLILLSDPVK 344

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
                L+  +        L P ++G    L        ++ G    G +G+ +G    A+
Sbjct: 345 GIYFILFVLLLQQFDGNILGPKILGDSTGLSAFWVIVAILLGGGLFGFVGMIMGVPTFAV 404

Query: 338 IAVIWKESIMAIKENKEKISSN 359
           I  I +  +    E K+  + +
Sbjct: 405 IYYIVQMILNNKLERKKLPADS 426


>gi|187927640|ref|YP_001898127.1| hypothetical protein Rpic_0540 [Ralstonia pickettii 12J]
 gi|187724530|gb|ACD25695.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
          Length = 349

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 136/347 (39%), Gaps = 3/347 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + Q  +  ++  + L   + L  FF  V   +I+     P+  + +++  +     A++
Sbjct: 5   NDHQKFLYLLLFAVTLGLCWILSPFFGAVFWGVILAILFQPVQRALVARMGKRRNLAALV 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ + I+P++F+    + E+     ++  A  +               W  +L  K
Sbjct: 65  TLALIILIVILPVIFVAATIVQEIGVAYQEIQSAQPNYSRYLSEAVHALP-TWVQQLLAK 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +               F    A   G     + +    M+  +FF  RDG  I 
Sbjct: 124 AGLTNIAGIQKKLADGAAQISQFAATKALSIGQNTFQFVVGFGVMLYMVFFLLRDGTEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++          + + +      V+R+T  G   +A+ +G + G  +W+ G+   V  G
Sbjct: 184 RRVRRALPMD-EEHKRLLLSKFTTVVRATVKGNIAVALVQGALGGLIFWILGIDGVVLWG 242

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P     + +  V++Y L+ G I+    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGASLVWIPVAVYFLMVGAIWKCVILVAFCGGVIGLVDNLLRPLLVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            K+P        +GG+   G+ G  IGP++ AL    W        E
Sbjct: 303 TKMPDWVVLISTLGGMELFGITGFVIGPLVAALFMASWDIFARGQNE 349


>gi|197301411|ref|ZP_03166492.1| hypothetical protein RUMLAC_00143 [Ruminococcus lactaris ATCC
           29176]
 gi|197299568|gb|EDY34087.1| hypothetical protein RUMLAC_00143 [Ruminococcus lactaris ATCC
           29176]
          Length = 459

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 107/356 (30%), Gaps = 17/356 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE---------------SSTFLAV 64
           I  ++        P++  L I +   PI     SK                  S     +
Sbjct: 66  ISYAVKSFLSVAKPIIYGLAIAYLLNPIVKVIDSKLVPFFEKKCPKMKRKETFSRGVGIL 125

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS--DIPGGMWASEL 122
           ++ V ++ + +  L  +       +++++  V       +     +   D   G     +
Sbjct: 126 VSLVLLVAVIVALLNMMIPQLYTSIRDMIVNVPSQMNRFVKAFNEMHSSDSTVGKILENV 185

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +  +  Q+             +  +           L++ + +I  I  LF   +   
Sbjct: 186 MKEATTFIQNWMRTDLMDKVNEWMTQLTAGVILMVREILNFIIGMIVSIYVLFSKEKFMC 245

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              + + ++           +     ++     +G  I +   G++      +  +P  +
Sbjct: 246 QAKKLVYAIFRPTKANLILHVGSKSNEIFGGFIIGKIIDSAIIGVLCFIGLSILNIPYTL 305

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + VI  +  +IP   P      S  L+   +        ++  +        L P ++G
Sbjct: 306 LVSVIVGVTNVIPFFGPYIGAIPSALLIFLADPVKGVYFVIFIILLQQFDGNILGPKILG 365

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               L      F ++      G+ G+ +G    A+I  I    +      K+  + 
Sbjct: 366 NSTGLSAFWVVFSILIAGGLFGIPGMLLGVPTFAVIYYIISMVVNRKLRKKQLPTD 421


>gi|221068171|ref|ZP_03544276.1| putative phytochrome sensor protein [Comamonas testosteroni KF-1]
 gi|220713194|gb|EED68562.1| putative phytochrome sensor protein [Comamonas testosteroni KF-1]
          Length = 871

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 109/351 (31%), Gaps = 13/351 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + E +   + ++  MI  I++++LYF +    P+  A++ GF   P  S    +      
Sbjct: 79  LAEMLPALRLLIGLMIASIVILALYFGRDLLIPLALAMLFGFLLDPAVSRL-KRWGLPRM 137

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---SDIPGGM 117
             A++     +       ++L      ++++L + +           R L   +++P   
Sbjct: 138 ASAIVVVAFALAALGGLGMYLGS----QVQQLSADLPTYQSTIRDKLRSLRKSANMPSAW 193

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    +    +    +   ++   +       +   + +L      +     +  F
Sbjct: 194 DGVFKTYNTVEKEIASVDSARARVQKVEVQTPDSKPTTRMLQWLGRIAEPVTTAGIVLLF 253

Query: 178 YRDGFSISQQLDSLGEHLFP---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                     L      L                + I        I+ +  G+ L     
Sbjct: 254 VILILLDRDDLRDRLLRLVGGNLNLATDALDEASQRIGKYLRMQFIVNVSYGVPLAMGLL 313

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           L GVP  +  GV+ AIM  +P   P+      +++   +               +   I 
Sbjct: 314 LIGVPGAILWGVLGAIMRFVPYVGPMMSAVFPLALAFAVDPGWNMFLLTLGLILLLELIS 373

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  + P+L G    L  L             G +GL +   L   + V+ +
Sbjct: 374 NNVIEPWLYGSSTGLSTLSIIVAATFWTALWGPIGLILSTPLTVCLLVLGR 424


>gi|150390221|ref|YP_001320270.1| hypothetical protein Amet_2457 [Alkaliphilus metalliredigens QYMF]
 gi|149950083|gb|ABR48611.1| protein of unknown function UPF0118 [Alkaliphilus metalliredigens
           QYMF]
          Length = 411

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 115/324 (35%), Gaps = 4/324 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L    +P + A++I +   P+      K      +  ++  + + C+ ++  L L    
Sbjct: 88  LLMEILSPFIIAIVIAYILNPLIHYLQVK-GIDRMWGVLLVYLFISCMILILSLTLVPRI 146

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E++ L++ +   +         L ++      +              +          
Sbjct: 147 TEEVRNLMAFLPQYSNDS---YEHLHNLYLRYNQNLESLPTEFESVKELLRLNIDRIQEI 203

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I    +   +      ++++ + I +F+F +D     + +  L           I++
Sbjct: 204 VFGIASSFTSTLLGLFSRLVNLVLIPILVFYFLKDAKGFKKAIILLIPRYLRKNVMHIAK 263

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V  V+     G  I+A   G++   +  +  V   V +G+I  I  ++P   P+     
Sbjct: 264 DVDSVLGGFIRGQLIVAGFVGILTMISLLVLRVEFAVLVGLIAGIANIVPYFGPVVGIVP 323

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +   +      A  + +   +   I    L P +VG  + L  +     L+ G R +G+
Sbjct: 324 GVLFALLDGPIKAIWVVVVFTVIQQIESAILAPKIVGKSVGLHPVLVILALLVGGRFLGI 383

Query: 326 LGLFIGPVLMALIAVIWKESIMAI 349
           +GL I   +   I V+ K  I  +
Sbjct: 384 VGLLIAVPVAGTIKVLGKHLISHV 407


>gi|254253542|ref|ZP_04946859.1| hypothetical protein BDAG_02809 [Burkholderia dolosa AUO158]
 gi|124898187|gb|EAY70030.1| hypothetical protein BDAG_02809 [Burkholderia dolosa AUO158]
          Length = 350

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 137/345 (39%), Gaps = 3/345 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +    +++  + +   + L  F   V    I+     P+   F ++  +     A++   
Sbjct: 8   EKFFYFLLFAVTVGLCWILAPFSGAVFWGTILAILFQPVQRWFAARFGKRRNVAALLTLT 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +     + +           L    L+
Sbjct: 68  LIVLIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDIIHALPTSIQHLLAKYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++             F    A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NIPGIQKKLTEGAAQ-ISQFAAAQALSIGQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G + 
Sbjct: 187 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L  G I+    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWVPAALYFLATGAIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        +GG+   G+ G  IGP++ AL    W     + +  
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARSEQSE 350


>gi|54026317|ref|YP_120559.1| hypothetical protein nfa43460 [Nocardia farcinica IFM 10152]
 gi|54017825|dbj|BAD59195.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 408

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 101/310 (32%), Gaps = 14/310 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            ++  L     PV  AL++    WP      +         A ++ +  + +    +  +
Sbjct: 74  WTIALLWVIVLPVALALVVATVLWPPTRWLTNH-GVRPGLAATLSVLGFLGILAGVIALI 132

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 +  +L  K            R                +         + +    
Sbjct: 133 VPSVADQAPDLADKASEGINKVRDWLR------------GPPLRIRDEQLDQAVDTIGNR 180

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  + I               +++  +++  FFF +DG      L S+       +++
Sbjct: 181 LQSSAEQIATGVFSGVTTATSALITLFLVLVLAFFFIKDGPKFLPWLHSVTGAGAGRHFE 240

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +        ++++ + +++G+   + GVP  + L V+T I   IP      
Sbjct: 241 EVLNRIWVTLGGFIRTQALVSLIDAVLIGAGLVILGVPLSLVLAVLTFIGGFIPIVGAFV 300

Query: 262 FTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             A+++ + +    +  A  +         +    L+P L    ++L  +     +  G 
Sbjct: 301 AGALAVLVALVANGVTTALIVLAIIIAVQQLEGNILQPVLQSRSMQLHAVVVLLAVTAGG 360

Query: 321 RTMGLLGLFI 330
              G++G F+
Sbjct: 361 SLYGIVGAFL 370


>gi|89075007|ref|ZP_01161452.1| putative permease PerM [Photobacterium sp. SKA34]
 gi|89049246|gb|EAR54810.1| putative permease PerM [Photobacterium sp. SKA34]
          Length = 361

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 111/343 (32%), Gaps = 12/343 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +   +I+    +++YFL     P+L A+++ +      +   +K     T 
Sbjct: 10  QRRFSDPHAVSLVVILLGGFLTIYFLGSLITPLLVAIVLAYLLEWPVARL-NKLGMPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +    L ++ L  L      ++  L + V             L +         
Sbjct: 69  SVAIVLLVFASLMVLALFGLVPTIWHQITNLSADVPKMFNDLQIYVSSLPERYPDFVQPA 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  +   +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 QVVDLMNTLREKVLGLGESVVKGSLASLVSLAT--------IGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + L ++          K+   + + I +   G     I  G+     + +  +   
Sbjct: 181 DEMLRTLLNVLP-KNRRLASKVGSEMNQQISNYIRGKVTEIIIVGIASYVTFEVMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+  +  +IP     + T     + L   G   +   L L   I   +    L P 
Sbjct: 240 VLLSVLVGLSVLIPYIGAAAVTVPVAMVGLFQWGWTPDFWWLLLAYGIIQMLDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    + L  +     ++      G  G+F    L  L+  +W
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342


>gi|145596127|ref|YP_001160424.1| hypothetical protein Strop_3615 [Salinispora tropica CNB-440]
 gi|145305464|gb|ABP56046.1| protein of unknown function UPF0118 [Salinispora tropica CNB-440]
          Length = 412

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 110/335 (32%), Gaps = 16/335 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            + + L    G   PV+ A+ +    +P  +    +          +  ++++ LF   +
Sbjct: 94  ALFLGLRNAAGLLVPVVIAVFLAVGLYPAVARL-RRLGLPHGLAVAVVMLTLLLLFCSGV 152

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + +  + + +     +                         L     L   ++
Sbjct: 153 VALVPPVVTQSNQFIEQFPSYLEALQR---------------NETVNELIERYDLVERAQ 197

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T+ +            +        + +++   +F      +     +L       
Sbjct: 198 QAADTDALGQALGGVLGGAQLIFGTAFRTLTVLVLTTYFLAYFNRLRSLGYALVPRSRRD 257

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             + I   +   + +  +G  IIAI  G        +A +P   AL V+ A+  +IP   
Sbjct: 258 RVRLIGDEIIVKVGAYIVGALIIAILAGTTTFVFALIAELPYPFALAVVVAVTDLIPQIG 317

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 +   +    ++       L+  I   + +  + P ++   +++  +      + 
Sbjct: 318 ATLGAVIVSLVGFATDLPVGIACVLFFLIYQQVENYLIYPKVMRRSVQVNEVAALVAALL 377

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GV  +G++G  I    +A   +I +E ++  ++++
Sbjct: 378 GVALIGVVGALIAIPTVAAFQLILREVVIPRQDSR 412


>gi|312867392|ref|ZP_07727601.1| putative membrane protein [Streptococcus parasanguinis F0405]
 gi|311097093|gb|EFQ55328.1| putative membrane protein [Streptococcus parasanguinis F0405]
          Length = 391

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +    F      PV+ + ++ +   PI      K      F        +  L I
Sbjct: 42  ITFIFIPIFEFAGAVMLPVIISGLLYYLLNPIVDFLERK-GLKRIFAISFVFFLIAVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +          D            +      +   
Sbjct: 101 WGLAVVIPAVQRQVVSFFHNLPTYLEKANATIDDFLDNRVSSDVKPQLDEITKELSANIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +    ++++         + +        M   +F+  RDG ++   +       
Sbjct: 161 SWASSISGRAVNWVSNLIGVASQVIVALI----IMPFIVFYLLRDGKNLKGHIVRFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++   V   + +   G   +AI   ++    + + G+   V LG+   I+ +IP
Sbjct: 217 IRKSAEQVLSDVNTQLSNYVRGQITVAIVVAIMFIIFFKIIGLRYAVTLGISAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +  A+E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLVAGPEMFIKVLIVFAVEQTIEGRFVSPLVLGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+F+G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVFLGIPVYASAKVVIGAIFEWYK 371


>gi|256761322|ref|ZP_05501902.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256682573|gb|EEU22268.1| conserved hypothetical protein [Enterococcus faecalis T3]
          Length = 394

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 109/337 (32%), Gaps = 2/337 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI             PVL  +I+ +   P+      K      +   I  V ++ L +
Sbjct: 37  VSFIFKPIFVIFSAVLGPVLFGIILFYLLNPMVKRLEKK--IPRVWAIAILYVLIIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L LF     + +EL+ +     +  +   +            E   + ++       
Sbjct: 95  LAGLQLFPIIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S      + +    +             L++    I  FF  +D       +  +    
Sbjct: 155 NSFKDFAGDYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYSFVKGIIPPA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + + S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP
Sbjct: 215 FRPDFDEYSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F      +       I    + P ++G  +K+  +     
Sbjct: 275 YIGPFIAFIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     +GL+G+  G  +  L+ V         K+ 
Sbjct: 335 LLVMGELLGLMGVIFGIPMYCLVKVTVIYLFRKFKQR 371


>gi|50085703|ref|YP_047213.1| PerM family permease [Acinetobacter sp. ADP1]
 gi|49531679|emb|CAG69391.1| putative permease (PerM family) [Acinetobacter sp. ADP1]
          Length = 396

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 121/348 (34%), Gaps = 6/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + ++L  LY LK    P + A +I +   P+      K          I  +
Sbjct: 7   RRVFILAGIALLLWVLYLLKPVVIPFVGAFLIAYLFSPLVEKLS-KIGLPRWLSISIVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L    + ++      ++      +            +L  +        +      
Sbjct: 66  GIGVLLTWAMWYVVPLVWQQLMYARDSIPSGIHWVNAT--FLPWVSHTFNVERMEIDTDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    +T    + I  +    ++ G+ F+    +I+ + I  F+F  D   +   L
Sbjct: 124 ISTVVMEYIQTNYSADSIQTMALRLAQSGLNFIQIGGTIVLIPIISFYFLLDWDRMLNSL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +     +I      V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEESTLRIVYECHSVLGAFVKGQFLVMLLLGIVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +      + +   I   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVIATVFQFGVDWMQLALVGVVFMIGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ I   + A+I V+ +    A +  +
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLRHLREAYEHTQ 351


>gi|329114629|ref|ZP_08243388.1| UPF0118 membrane protein [Acetobacter pomorum DM001]
 gi|326696109|gb|EGE47791.1| UPF0118 membrane protein [Acetobacter pomorum DM001]
          Length = 398

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 101/346 (29%), Positives = 166/346 (47%), Gaps = 6/346 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SS 59
           + +    +     + +FI+ V++Y ++GF   +    +    +WP+Y+   +K     S 
Sbjct: 48  QRSRRGQEMARTVLALFIVGVAVYTIQGFLPALAWGSVFAIATWPLYTRACNKWPHAASG 107

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T L ++ T ++  LF++PL  +    + E +  +  +  A ++G+PVP  +  +P G  A
Sbjct: 108 TLLPLLFTAAMALLFVIPLTLVTLEAVGEAQSALEWLSHAREYGVPVPDTIHRLPFGSAA 167

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W +               L + G+          G           F I+ LFF Y+
Sbjct: 168 ISKWWEAHLSDPRDLSGMLGNLDSKGVA----VTRAVGSQVAHRATLFCFSILTLFFLYK 223

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG S+ +Q   +    F    + I R +   I  +  G+ ++ IGEGL+LG  Y  A  P
Sbjct: 224 DGLSVIRQCRVVSCRAFGKRGESIGRQIVASIHGSVQGLVLVGIGEGLLLGIIYVFAHAP 283

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                GVITA+ AMIP  A I+   VS+ +L++G+   A   F  GA+ +F  D  +RP 
Sbjct: 284 HPALFGVITAVAAMIPFCAMIAVGLVSLLILVQGSSVAAITTFCIGAVIIFTADHFIRPA 343

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+GG  KLPFL    G++GG  T GL+GLF+GP  MA + ++W   
Sbjct: 344 LIGGSTKLPFLWVLLGILGGAETWGLIGLFVGPAAMAALNLLWCRW 389


>gi|302558032|ref|ZP_07310374.1| membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302475650|gb|EFL38743.1| membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 399

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 104/359 (28%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + ++ +      + + L G    VL A  +     P  S   ++   
Sbjct: 12  RMPRWLPRAMVLALALYAVFQLGSWAFHQLIGLLINVLIAFFLALAVEPAVSWMAAR-GV 70

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +  + V+      +  L      ++ ++V          I             
Sbjct: 71  RRGLGTFLVFLGVLIAAAGFVTLLGSMLAGQIIKIVEDFPDYLDSVINWINGH------- 123

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +   L      + L  +    N +              L     ++ + +  F+F
Sbjct: 124 -----FHTELRRVDIQEGLLRSDWLRNYVQNSATGVLDVSTQVLGGLFQLLTIGLFSFYF 178

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + + SL      A   +   I             ++A+  GL          
Sbjct: 179 AADGPRLRRTVCSLLPPARQAEVLRAWEIAVNKTGGYLYSRGLMALVSGLAHYVLLEFLE 238

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP    L V   +++  IP        A+ + +    + + A  + ++  I     +  L
Sbjct: 239 VPYAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLVFVVIYQQFENYVL 298

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P L    + +     F  +V G   +G +G  I     A +       +       + 
Sbjct: 299 QPKLTSRTVDIHPAVAFGSVVAGTALLGAVGALIAIPATATLQAFLGAYVRRYDVTDDP 357


>gi|240141401|ref|YP_002965881.1| hypothetical protein MexAM1_META1p5000 [Methylobacterium extorquens
           AM1]
 gi|240011378|gb|ACS42604.1| Conserved hypothetical protein, putative inner membrane protein,
           putative permease [Methylobacterium extorquens AM1]
          Length = 359

 Score =  140 bits (352), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 5/331 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLF 80
            LY L GF   ++ A+++    WP++     +            + T  V  + ++P+  
Sbjct: 30  GLYILSGFLRALVWAVVLAIALWPLFVRAHRRFPPGRHNILWPAVFTGLVALVLLLPIAV 89

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      E  +L++    A ++GIPVP +++ +P G  A   W         L       
Sbjct: 90  LAVEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTDWWNAHLAHAGLAHELSER 149

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L T     + R     G   +   +   F ++ALFF +R+G ++  Q       LF    
Sbjct: 150 LNTTSNRDLTR---SLGAGLVHRAVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPRG 206

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP+
Sbjct: 207 ERVARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAPL 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +F   ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV
Sbjct: 267 AFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGGV 326

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            T GLLGLF+GP +MA + ++W+E      E
Sbjct: 327 ETFGLLGLFVGPAVMAALILLWREFTEGSGE 357


>gi|84686212|ref|ZP_01014107.1| Lipocalin-related protein and Bos/Can/Equ allergen [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665739|gb|EAQ12214.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacterales
           bacterium HTCC2654]
          Length = 362

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 110/344 (31%), Gaps = 14/344 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +   +  V L+FL     P L    I +   P+     +       +  +  ++  + 
Sbjct: 12  WAIAAVVFFVLLWFLGDVIMPFLIGGAIAYFLDPVADKLEAW-GFKRIWATITISILALI 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +F++ +L +    + +  +L++      Q+                              
Sbjct: 71  VFVILILLIVPSLVNQAGQLINLAPQIAQNLRDFL----------IERFPDVVDQDSVLR 120

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +        +    +        M  ++  L  + + +  F+   D   +   +D L 
Sbjct: 121 QSLDQIGKTIQDRGAELVDAVLSSAMGIVNIALLFVIVPVVTFYLLWDWDRMVAAIDDLL 180

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   + ++  + + +     G   + +  G     A  LAG+   + +G +   + 
Sbjct: 181 PRDHAPVIRDLASQIDRTLAGFIRGQGTVCLILGTFYAVALMLAGLQFGLIVGAVAGALT 240

Query: 253 MIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            IP    +   A++I L      G  ++   +     +  F     L P LVG  + L  
Sbjct: 241 FIPYIGALVGGALAIGLALFQFWGEWWHIAIVAGIFMVGQFFEGNILTPNLVGTSVGLHP 300

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   F L       G +G+ +   + A + V+ +  I   KE +
Sbjct: 301 VWLIFALSAFGTVFGFVGMLVAVPVAAALGVVTRYLIQRYKEGR 344


>gi|294626250|ref|ZP_06704853.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|294664600|ref|ZP_06729940.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
 gi|292599396|gb|EFF43530.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
 gi|292605628|gb|EFF48939.1| permease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
          Length = 388

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 126/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S     ++  V
Sbjct: 14  RRLKWAAVIVGVLWVVSLLAPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNVAVMLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LF++ L+ L      ++  L+  +       I                +L      
Sbjct: 73  LATLLFVLALMILVPMIERQIMTLIDALPQMRNWAIGTA---IPWLEAKTGMQLMAWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S           +  + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     ++++    V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTASRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +      + 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHEQYTRSD 358


>gi|42782011|ref|NP_979258.1| hypothetical protein BCE_2955 [Bacillus cereus ATCC 10987]
 gi|42737935|gb|AAS41866.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 373

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 37  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEEK-KVPRNLAILLLYLFIITLTA 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 96  VGVGVVVPTISQQLMDLVKNMPGYIKEGKLYIQDLSHHRLFEWLSTQNY----VSIETIE 151

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 152 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 212 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 272 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 332 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 369


>gi|17232430|ref|NP_488978.1| hypothetical protein alr4938 [Nostoc sp. PCC 7120]
 gi|17134076|dbj|BAB76637.1| alr4938 [Nostoc sp. PCC 7120]
          Length = 379

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 106/337 (31%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ +K     + +A+++  T   +   F  +      +  ++A     
Sbjct: 7   IGLIALILSLYILWQIKEVLLLMFAAVVLATTLNRLAKRFQ-RSGMKRGWAVMLAVAIFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +     +      +  EL  +V    +        L           +   +    Q
Sbjct: 66  AVVVGFFWLIVPPFAEQFNELTYRVPQGFERFNAWINELRTRIPAQLVPYIPDLNSLIQQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         I+ +   +       L+  L ++ +++       D  +  +    L
Sbjct: 126 ----------AQPFINRVLGSSFAIVSGSLEVVLKVLLVLVLTGMLLADPIAYRKVFVRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      I       +     G  I     GL+      + GV + +ALGV+   +
Sbjct: 176 FPSFYRRRVDGILDQCEVSLEGWVTGAVIAMGVVGLMSVVGLSILGVKAALALGVLAGFL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ + +  + +    + +   I        + P ++   + L    
Sbjct: 236 NLIPNLGPTLSVVPAMAIALLDSPWKVVAVLILYFIIQQAESNFITPIVMAQQVSLLPAV 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +  V   G LGLF+   L  +  +  +E ++ 
Sbjct: 296 TLISQLFFVTFFGFLGLFLALPLTVVAKIWVQEVLIK 332


>gi|254501255|ref|ZP_05113406.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222437326|gb|EEE44005.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 371

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 105/351 (29%), Gaps = 9/351 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     + +F     LY   G   P ++   + +   P+      K      +    
Sbjct: 3   LRRQIQFWLISLFAFCAFLYVFSGVLLPFVAGAAVAYLLDPVCDRLE-KLGMGRLWATFT 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + L I+  + L      ++   + +     +    +            A      
Sbjct: 62  ILLAFVFLLILFFILLLPVLGNQLASFLERFPELVRQLQGLVNDQMGQRLAEAAGINLAD 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +            +  + +     G   L      +   +  F+   D   + 
Sbjct: 122 LQASMAEMVGQ-----GAAFVGKLAQSVWSGGQALLSILSLFVITPVVAFYLLLDWDHMI 176

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D           + ++R +   +     G   + +  G     A  +AG+   + +G
Sbjct: 177 AKIDGWLPRDHLEEIRGLAREMDGAVAGFVRGQLSVCLLLGAFYAIALAVAGLNFGLLIG 236

Query: 246 VITAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP         VS+    +           +    A+  F+    L+P LVG
Sbjct: 237 MGAGLVSFIPFVGAGLGFIVSMGVGVVQFWPEWPMILVIGAVFAVGQFLEGNILQPKLVG 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L  +   F L       G +G+ I     A+I V+ + ++     + 
Sbjct: 297 NSTGLHPVTLMFALFAFGYLFGFVGMLIAVPAAAMIGVLARFALKQYLASP 347


>gi|163745974|ref|ZP_02153333.1| hypothetical protein OIHEL45_10318 [Oceanibulbus indolifex HEL-45]
 gi|161380719|gb|EDQ05129.1| hypothetical protein OIHEL45_10318 [Oceanibulbus indolifex HEL-45]
          Length = 360

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 112/341 (32%), Gaps = 14/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   + +V+L+F+     P L    I +   P+      +   S      + TV+ + +F
Sbjct: 14  IAAAVFMVALWFMGDVLLPFLLGGAIAYFLDPVADRLE-RLGLSRVMATALITVAAILIF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +    + +   L+       ++                                
Sbjct: 73  VLMALLVVPTLVNQTVNLIETAPQVTRNFTDFI----------TDRFPSLLDDDSTLRTS 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +           + + A       ++  L  + + +   +   D   +   +D L   
Sbjct: 123 LTTLGTTIQERGGELFQTALASFASLINILLLFVIVPVVAVYLLLDWDRMVAGIDRLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++R +   + S   GM  + +  G     A  L G+   + +G I  ++  I
Sbjct: 183 DHAPTIRQLAREIDATLASFVRGMGTVCLILGTYYAVALMLVGLQFGLVVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+  +   +     +   +    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWLSIGLVAGIFVLGQIVEGNLLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               L       G +GL +   + A I VI + +    +E+
Sbjct: 303 LLLALSVFGTLFGFVGLLVAVPVAAAIGVIARFATARYRES 343


>gi|167747388|ref|ZP_02419515.1| hypothetical protein ANACAC_02107 [Anaerostipes caccae DSM 14662]
 gi|167653366|gb|EDR97495.1| hypothetical protein ANACAC_02107 [Anaerostipes caccae DSM 14662]
          Length = 387

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 108/331 (32%), Gaps = 10/331 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSF----------ISKKEESSTFLAVIATVSVMCLFIV 76
           L     P     +I +   P+ + F            +K        +   + ++    +
Sbjct: 46  LWNTIFPFFIGFLIAYVMNPVVTFFNEKVFSSLFGEKRKRLCRACAILTTYIILVGALTI 105

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+F+       +KEL S++ + +   + +     +   G++ +EL     +      + 
Sbjct: 106 CLIFIVPQLYDSIKELSSQIPVISDQIMGLLDHYKESGSGVFPAELMETLETKSLPKLVQ 165

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               + T  I  +  F+  F     +  ++ +  I           +  + + ++  +  
Sbjct: 166 LSNQMLTEAIPMLYNFSVSFVKWLFNLFIAFVVSIYMTADKQLLKSACRRLIFAVFPYDA 225

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                   +    +     +G ++ ++  G +      L  +P  V + VI  +  MIP 
Sbjct: 226 AVPVIHGLKECHNIFSGYIIGKSLDSLIIGFLCFLLMSLLNLPYTVLISVIVGVTNMIPY 285

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P        ++L   + +          +        L P ++G    +  +   F +
Sbjct: 286 FGPFIGAVPGAFILFIVSPYKTLIFLGMILVLQQFDGLVLGPKILGNSTGVRPILILFSI 345

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             G    G LG+F+G    A++  +    + 
Sbjct: 346 TVGGAYFGPLGMFLGVPFFAVVQYLVNNWVN 376


>gi|307544883|ref|YP_003897362.1| hypothetical protein HELO_2293 [Halomonas elongata DSM 2581]
 gi|307216907|emb|CBV42177.1| conserved hypothetical protein [Halomonas elongata DSM 2581]
          Length = 359

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 128/350 (36%), Gaps = 9/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  QG +  ++  + L  L  ++    P   ++++ +   P+      K   S      +
Sbjct: 1   MRRQGWIAAVLAALGLWFLISIEPVLMPFFVSMVLAYLGDPLADRLEDK-GLSRRLSVSL 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  + ++ LL +      ++ +L+  +                   GM  S  + +
Sbjct: 60  VFLLLTLVIVLSLLLVIPILGRQIGQLIESLPAILGWVQSTVVPRIQSMTGMDLSTDFDQ 119

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                      + TF  T     +    S+ G+  +    ++  + +  F+   D   + 
Sbjct: 120 MRETLVDNWKETGTFAAT-----LLAQVSKSGLALVALVGNLALIPVVTFYLLLDWDDLV 174

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++       +     +++    +V+ +   G  I+ +  G++      L GV   + +G
Sbjct: 175 AKVRGSLPRRWEPTVVRLAGECDEVLSAFLRGQLIVMLCLGIIYAIGLTLLGVKFGLLIG 234

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +++ + +++P    I   +VS  +      G I+    +        FI    L+P L+G
Sbjct: 235 LLSGLASIVPYLGVIVGISVSGLVAFFQSGGEIWMLLGVAAVFGFGQFIESIVLQPKLLG 294

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             I L  +   F ++ G +  G  G+ +   + A++ V+ +      K +
Sbjct: 295 DKIGLHPVAVIFAVLAGGQLFGFTGVLVALPVAAMVMVVLRYLHERYKNS 344


>gi|296330760|ref|ZP_06873236.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675767|ref|YP_003867439.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296152074|gb|EFG92947.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414011|gb|ADM39130.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 369

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/351 (16%), Positives = 118/351 (33%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKE 56
                Q +   +I+++     +  + F         P+L A I+ F   P+      K  
Sbjct: 7   HFWTLQILFVLLIIYVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKK-- 64

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              T   ++  +  + L       +      ++  L + +    +    + + LS     
Sbjct: 65  IPRTLSILLIYLLFIGLLAFVSASVGPVITSQVTGLFNNLPDYIKQIQSLTKDLSHSQWF 124

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            W             S    S T    N    I    S    +  +  L II +   LF+
Sbjct: 125 TW----MMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFY 180

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG         +    +     KI + +   + + F G  +I +  G      Y +A
Sbjct: 181 MLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA 240

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+P  + LG++ AI  +IP   P    A ++ +    +   A    +   I   +    L
Sbjct: 241 GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLL 300

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            P ++G  +    L     L+G     G+LG+ +   + A++   +   + 
Sbjct: 301 SPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVR 351


>gi|307320954|ref|ZP_07600362.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306893438|gb|EFN24216.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
          Length = 371

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 153/339 (45%), Gaps = 3/339 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L  F + +L A +I F++WP Y  F           A   TV V+ + + PL  
Sbjct: 22  IGCTLVLWPFLSAILWAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLAL 81

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L       +  LV+ V    + G P P    D    +  +           +    + T 
Sbjct: 82  LATTLADNISSLVAGVTHVLEQGPPAP---PDWVRELPIAGEGLATYWEGLAHNAPAFTI 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                I      A   G +F    L +   I   FF +  G  ++     + E +  A  
Sbjct: 139 ELKKVIGPFADVALIGGTLFGAGLLELALSIFIGFFLFLHGRRMTALTRQIAERVAGARA 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +++  +V   +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G P 
Sbjct: 199 RRLLSVVGVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGPPF 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+++L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+GGV
Sbjct: 259 VWGPVALWLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIGGV 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              GL+GLF+GP L+A+   +++E I A  E + +  S+
Sbjct: 319 LAFGLIGLFLGPTLLAVAHSLFREWIAAELEERRQPPSS 357


>gi|218528263|ref|YP_002419079.1| hypothetical protein Mchl_0209 [Methylobacterium chloromethanicum
           CM4]
 gi|218520566|gb|ACK81151.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 651

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 103/355 (29%), Gaps = 24/355 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +              V + +
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVN-----LLRRLRLGRVPSVI 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +  +      ++  L   +             L     G  +      +  
Sbjct: 78  VAVLLALAVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQ 137

Query: 129 HPQSLKILSETFLKTNGID-----------------FIPRFASRFGMIFLDYCLSIIFMI 171
              + +         +                         A +     ++   ++  ++
Sbjct: 138 VHNATQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVL 197

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + + F       +  ++  L                 + + + FL    +    G ++G 
Sbjct: 198 VVVVFLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAARRLGTYFLAQLGMNATFGFIIGL 257

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIEL 289
             W  GVP+ +  GV +A+M  +P           + L               +   +  
Sbjct: 258 GLWFIGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVE 317

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    + P L G    L         +      G +GL +       + V+ + 
Sbjct: 318 PLFGHVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|16262687|ref|NP_435480.1| hypothetical protein SMa0447 [Sinorhizobium meliloti 1021]
 gi|14523310|gb|AAK64892.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 373

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 154/339 (45%), Gaps = 3/339 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L  F + +L A +I F++WP Y  F           A   TV V+ + + PL  
Sbjct: 24  IGCTLVLWPFLSAILWAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLAL 83

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L       +  LV+ V    + G P P    D   G+  +           +    + T 
Sbjct: 84  LATTLADNISSLVAGVTHVLEQGPPAP---PDWVRGLPIAGEGLATYWEGLAHNAPAFTI 140

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                I      A   G +F    L +   I   FF +  G  ++     + E +  A  
Sbjct: 141 ELKKVIGPFADVALIGGTLFGAGLLELALSIFIGFFLFLHGRRMTALTRQIAERVAGARA 200

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +++  +V   +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G P 
Sbjct: 201 RRLLSVVGVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGPPF 260

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+++L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+GGV
Sbjct: 261 VWGPVALWLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIGGV 320

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              GL+GLF+GP L+A+   +++E I A  E + +  S+
Sbjct: 321 LAFGLIGLFLGPTLLAVAHSLFREWIAAELEERRQPPSS 359


>gi|305682180|ref|ZP_07404984.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
 gi|305658653|gb|EFM48156.1| putative membrane protein [Corynebacterium matruchotii ATCC 14266]
          Length = 472

 Score =  139 bits (351), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 112/337 (33%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +I+      ++ +         P++ A+I+    WP  +    K    +   A+IA 
Sbjct: 41  LRLLIIAAAAFVIWHILSQVWRGGLPIVLAIIVCTVLWPPVAWL-RKHGIPAGLAAMIAI 99

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +     F   +  +    + + + L  +     Q               +W         
Sbjct: 100 LGSFGGFGFLIWLIAPSVVNQSQTLYFQAFEGVQRLQ------------LWLQGPPMNLD 147

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 +I +      +    I         I     ++++ +++  FFF +DG      
Sbjct: 148 PSDLDDRIDTAAQWLQSKAGSIASEVFSGLGIASSVMVTMLVVLVLTFFFLKDGDKFLPW 207

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +       +  ++       +        ++++ + + +GS   + GVP  +AL V+
Sbjct: 208 LRGMVGQRAGWHLTELLTRGWITLSGFIRAQALVSLVDAVFIGSGLIILGVPLALALAVL 267

Query: 248 TAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T I   IP         +S+   L+   +  A    +   +   +    L P L    + 
Sbjct: 268 TFITGFIPIVGAFIAGTLSVTVALVSLGVTEAVITLIIVLLVQQLEGNILSPLLQSKAVN 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  +     +  G     + G F+     A+ AV+++
Sbjct: 328 LHPVVVLISVTVGGSLFNIAGAFLAVPFAAMAAVLFR 364


>gi|241889494|ref|ZP_04776793.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
 gi|241863801|gb|EER68184.1| conserved hypothetical protein [Gemella haemolysans ATCC 10379]
          Length = 382

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 124/327 (37%), Gaps = 11/327 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     P++ A +  +   P+ + F  K   S    +++A    + L ++ ++ +    
Sbjct: 61  IVSSIITPIIVAYVFYYMLNPLVNFFEKKM--SRFIASLLAIFVGIILILIVIIGVVPII 118

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + + + L++ +    +         SD        E    +L+          + +    
Sbjct: 119 VEQTQNLITALPRYIEVVKGYLETYSDNAYVQVVVEYVNNNLNV---------SKISEKL 169

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +      A             ++ M   LFF  +D    ++ + SL          +   
Sbjct: 170 VSVATSIAQGVVSSISSTASVLVTMPFVLFFLLKDASHFNKFVISLLPKKLKQPVAETID 229

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + S   G  ++++  G++L   Y + G+    +L  I A ++++P   P+     
Sbjct: 230 EIDGKVGSYIQGQMLVSLCIGVMLFIGYNIIGLHYAFSLATIAAFLSIVPYLGPVIAITP 289

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    +      + +   I  F+    + P ++G  + +  L   F ++ GV   G+
Sbjct: 290 AMLVAASTSWIMVLKMLVVWGIVQFLEGNIISPNIMGRSMNMHPLTVIFVILIGVNIAGV 349

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G  IG  + +++ V+  + +++I++ 
Sbjct: 350 VGAIIGIPVYSILKVLVGKLLLSIRDR 376


>gi|116050638|ref|YP_790543.1| hypothetical protein PA14_29820 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296388888|ref|ZP_06878363.1| hypothetical protein PaerPAb_12095 [Pseudomonas aeruginosa PAb1]
 gi|313107690|ref|ZP_07793872.1| putative exported protein [Pseudomonas aeruginosa 39016]
 gi|115585859|gb|ABJ11874.1| putative exported protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310880374|gb|EFQ38968.1| putative exported protein [Pseudomonas aeruginosa 39016]
          Length = 352

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 132/332 (39%), Gaps = 3/332 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + L  F+  V    I+     P+      +  +     A+I  +  + + I+P++F+ 
Sbjct: 22  FGWLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAALITLLICVLIVIIPVIFIA 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E   +  +V     +     +            +   +      S      + + 
Sbjct: 82  GSLVQEGASVYQRVKSGELNFAAYLQQAVAALP-PSVHQWLERFDLANLSSLQEKLSSVA 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   A   G   LD+ +S   M+  LFF  RDG  + +++      L   +   
Sbjct: 141 MQASQVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHH 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +      VIR+T  G   +A  +G + G  +W+ G+   +  G + A ++++P  GA + 
Sbjct: 200 LFAKFTTVIRATVKGNIAVAATQGALGGLIFWVLGIEGALLWGTLMAFLSLLPAIGAALI 259

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+ 
Sbjct: 260 WAPVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMA 319

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             GL G  IGP++ AL    W       +E +
Sbjct: 320 LFGLNGFVIGPLIAALFMASWDLFTGREEEPQ 351


>gi|239637047|ref|ZP_04678041.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239597397|gb|EEQ79900.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 413

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 128/354 (36%), Gaps = 16/354 (4%)

Query: 10  GIMRWMIMFIILVSL----YFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
           G++  +++ I++       Y  + F         P++ +LII +   P+ +     +   
Sbjct: 43  GLLALVLLGIVIFIFDKVSYVFEPFIIIFNTIAAPIIVSLIIFYLFNPLVNLMERYR-IP 101

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                +I  ++++ +  + +  L      ++   ++      +        L+       
Sbjct: 102 RLVGIMIIYIAIVGIIALIVNLLIPVIGSQLGSFINNSPQYFKKFTNTINKLTS----NS 157

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   ++   +        + ++  D      + F     +  + I+     LFF  
Sbjct: 158 IFAGYYSQINDQLNSLTKKIPTMLSDYFDGFGSKLATFAEAVANVGVVIVTTPFVLFFML 217

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG        ++    F   +  +   +   + S   G  I++   G++L   Y + G+
Sbjct: 218 KDGHKFKDFTTNIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGVLLFIGYSIIGL 277

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  +      L +   +  F     + P
Sbjct: 278 KYSLILACIAAVTSVVPYLGPTIAISPAIIIAIITSPLMVLKLAIVWTLVQFFEGHFISP 337

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K  
Sbjct: 338 NIMGKTLKIHPLTIIFILLCAGNLLGIVGVILGIPGYAVLKVLVSHVFLLFKRR 391


>gi|134293526|ref|YP_001117262.1| hypothetical protein Bcep1808_4840 [Burkholderia vietnamiensis G4]
 gi|134136683|gb|ABO57797.1| protein of unknown function UPF0118 [Burkholderia vietnamiensis G4]
          Length = 379

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 158/344 (45%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              Q     +   +++++L+ ++ F   +  A +I    WP+   F       +  T +A
Sbjct: 39  RAQQIARVVLYAALLVLALWVIRDFLPAIAWACVIAIALWPLLKRFESNRWFRDRPTLIA 98

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T  V  L ++P+       + +  +L   +     +GI +P  +S +P G      W
Sbjct: 99  TVVTAGVSLLVVLPVAIALGQAIAQAHDLRIWLHSIQDNGIALPDVVSRLPYGSTQIADW 158

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + T +     + +  F  +FG           FM++ LF   R G  
Sbjct: 159 WQANLGHP---LHAGTAMHGANGEKVIAFGRQFGTKLAHALFEFGFMLVTLFVIMRAGHQ 215

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F      +   +   +  T  G+ ++ +GEG +LG AY LAG+P    
Sbjct: 216 LSGALLLGARRAFGRGGAALIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGLPHAAL 275

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG +TA+ AM+P  API F   +++L ++G    A  +   G + +F+ +  +RP L+G 
Sbjct: 276 LGFVTAVAAMLPFCAPIVFCGAALWLFVQGATAWAIVVLALGIVVVFVAEHFVRPVLIGN 335

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E + 
Sbjct: 336 STRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWSEWVA 379


>gi|210620795|ref|ZP_03292246.1| hypothetical protein CLOHIR_00189 [Clostridium hiranonis DSM 13275]
 gi|210155145|gb|EEA86151.1| hypothetical protein CLOHIR_00189 [Clostridium hiranonis DSM 13275]
          Length = 340

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 113/329 (34%), Gaps = 2/329 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL G   P + A ++ +   PI   F +K +        I    ++ + +  L+      
Sbjct: 4   FLIGLLMPFVIAFVLAYIFNPIIKFFENKFKAKRGASLFITYGGLIVVLLTILVMTLPVI 63

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  + ++V+               +S             + +    S  + + + L    
Sbjct: 64  IESIIDIVNNAPTYFAETEQFLINVSRHLEN--IDAATMQEIWDKISNMLPNLSSLFVGS 121

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  I +    FG    ++ L+ I     L    +    + + +  +      ++   +SR
Sbjct: 122 IGEIFKKTFSFGKFIFNFVLAFIICFYILLEKEKIFDFLKKAVYVVLGDKKASFVLTVSR 181

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +   F G    +I  G++ G   ++      +  G +  +M MIP   P      
Sbjct: 182 DLNDNVGKYFTGKIFDSIIVGVLSGIGLFVLKSKYALLFGTLMGLMNMIPYFGPAIGMTP 241

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + + +  +   A    ++  +   +    + P +VGG + L    T   +  G    G+
Sbjct: 242 VVLINLFNDPKIALFSLIYLLVVQQVEVAFIEPKVVGGQLGLSPFLTILAVTVGGGFFGI 301

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G+ +   +M ++ V   E +    +  +
Sbjct: 302 PGMILSTPIMGVLKVYITEYVETKSQEIQ 330


>gi|323530014|ref|YP_004232166.1| hypothetical protein BC1001_5738 [Burkholderia sp. CCGE1001]
 gi|323387016|gb|ADX59106.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 381

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 120/347 (34%), Gaps = 8/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q ++   +     + ++ L+    P L   +I +   P     + ++    T  A+   
Sbjct: 23  RQAMLWGALAVGAGLLMWILRPVLTPFLLGGLIAYMLQPGVEWLVRRR-IPRTLAALAMM 81

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + ++  L +F     E+  L S++           +     P         +  L
Sbjct: 82  LLFALVIVLLGLLVFAVIQKELPALASQIPGFTARINAWLQ-----PKLGLVGLESSFDL 136

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S  +++          +      R+    G   +    +++ + + L++   D   +  +
Sbjct: 137 SSLRNVLTSRLAGGGQSIEVAAWRYVRTGGSALVTVVGNVVVVPLVLYYLLYDRRKVFAR 196

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++SL    +    + +   + +++     G  ++ +        A  LAG+   + +G+ 
Sbjct: 197 IESLVPRPWLGKTRALVTEMDQMLSQYLRGQLLVMVVLATFYPIALSLAGLGVALPVGLF 256

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +   +++       G+ +    + L  A+   +    L P L+G  I
Sbjct: 257 TGLAVFIPYVGFATGLLLAMLAALLQFGDWYGFGAVALIYAVGQVLETAFLTPRLIGERI 316

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  L   F L+      G  G+ +   + A++    +E       +
Sbjct: 317 GLHPLAVIFALLAFGEMFGFFGVLLALPVSAILVTALREVRRRYLAS 363


>gi|134096432|ref|YP_001101507.1| hypothetical protein HEAR3279 [Herminiimonas arsenicoxydans]
 gi|133740335|emb|CAL63386.1| Conserved hypothetical protein, putative permease [Herminiimonas
           arsenicoxydans]
          Length = 369

 Score =  139 bits (351), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 3/348 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             Q     +++   L  +  L  F+  V  A ++     P Y   + K  + S   A+  
Sbjct: 16  IQQKTFLGLLIIFSLAFIGILLPFYGAVFWAAVLAILFSPFYRKLLIKMNQHSNLAALAT 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + + I+PL+ +    + E   L + +           + +         S+L    
Sbjct: 76  LGMCLVVVIIPLVLISISLVHEASALYANIRSGQIDFGVFFQKVISALPSWVVSQLERFG 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L+   SL+          G +FI + A   G    ++ +S   M+  LFF  RDG  I+ 
Sbjct: 136 LTDMTSLQAKLSNAAVQ-GSEFITKQAISIGQNTFNFLVSFTIMLYILFFLLRDGDRIAT 194

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L   + + +   +   IR+T  G  I+A  +G + G A+W  GV   +  GV
Sbjct: 195 RIKQAAP-LNAEHKRLLFNNLTTAIRATVKGNIIVAAVQGALGGIAFWFLGVQGALLWGV 253

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  GA + +  V+IY L+ G ++    L  +G + + +VD  LRP LVG   
Sbjct: 254 LMAFLSLLPAVGAALIWVPVAIYFLLTGAVWQGVTLIAFGVLVIGLVDNILRPMLVGKDT 313

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +LP        VGG+  +GL G  IGPV+ AL   +W+      ++ +
Sbjct: 314 QLPDFVVLISTVGGMAWLGLNGFVIGPVIAALFISLWEIFSSGKQKQE 361


>gi|330821282|ref|YP_004350144.1| hypothetical protein bgla_2g21980 [Burkholderia gladioli BSR3]
 gi|327373277|gb|AEA64632.1| hypothetical protein bgla_2g21980 [Burkholderia gladioli BSR3]
          Length = 350

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 135/343 (39%), Gaps = 3/343 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     ++  + +   + L  FF  +    I+     P+   F +   +     A++   
Sbjct: 8   QKFFHLLLAIVTIGFCWILLPFFGAIFWGTILAILFQPVQRWFAAHFGKRRNLAALVTLS 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL F+    + E+     ++  A  +     + +           L +  L+
Sbjct: 68  LIVLIVILPLSFVAGTLVQEIAFAYQQIKAAQPNMTGWLQEIVHALPASLQRILHSYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               ++             F+   A   G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 DIAGIQKKLTDG-AAAISQFVAAQAFSIGQNTFQFIVSFGIMLYLVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   + + +      V+R+T  G   +AI +G + G  +W+ G+   +  G + 
Sbjct: 187 RRALP-LDEDHKQLLLTKFTTVVRATVKGNIAVAIVQGALGGLIFWILGIEGVLLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y  + G I+    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGAGLVWAPAAVYFAVTGQIWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           P        +GG+   G+ G  IGP++ AL    W     A +
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIFARADQ 348


>gi|312959876|ref|ZP_07774391.1| hypothetical protein PFWH6_1780 [Pseudomonas fluorescens WH6]
 gi|311285823|gb|EFQ64389.1| hypothetical protein PFWH6_1780 [Pseudomonas fluorescens WH6]
          Length = 353

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 157/352 (44%), Gaps = 5/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ +   S + +  F++ +    ++ F SWP+            +  A 
Sbjct: 2   LNNDRLLVQILLLVLFGASFWVMAPFWSALFWGAVLAFASWPLMVLLTRWLGGRESLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           I T+  M L  VPL++L +     +++ V+ +           P WL  IP         
Sbjct: 62  ILTLGWMLLVAVPLVWLGFNLADHVRDAVALIKDIQVDGLPEAPTWLGSIPFVGERLVGM 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  ++S         +++   +++ G   L+  LS++F+     FFYRDG  
Sbjct: 122 WNSIDQQGAALMVSIKPYLGQVGNWLLARSAQIGGGILELTLSLVFVF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  +  L E L          +V   ++    G+   A  + ++    + +AGVP  + 
Sbjct: 178 LAMFVHRLLERLIGDRAGYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T ++++IP G P+ +   + +L  KG+   A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGIVTFLLSLIPMGPPLVWIPATAWLAWKGDYTYAVFLGVWGTFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              LP +    G+ GG+   G +GLFIGP L+A+   +  +        + +
Sbjct: 298 GGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLMDWSATHAPRRPE 349


>gi|167034729|ref|YP_001669960.1| hypothetical protein PputGB1_3734 [Pseudomonas putida GB-1]
 gi|166861217|gb|ABY99624.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 350

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 77/333 (23%), Positives = 149/333 (44%), Gaps = 5/333 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +  F + +L   I+ F SWP+            T  A + T + + +  +PL++L + 
Sbjct: 22  WVMAPFISALLWGAILAFASWPLMRLLTRLLGGRETLAASLLTTAWILIVALPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +++  + V           P WL  IP        W + L    +  + S      
Sbjct: 82  LADHIRDATAFVRDVQVDGLPEAPAWLGGIPFVGERLVNWWQSLDQQGAALLASAKPYFG 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +++   +++ G   L+  LS++F+     FFYRDG  ++  +  L   L     +  
Sbjct: 142 QVGNWLLARSAQIGSGVLELTLSLVFVF----FFYRDGPRLAAFVLRLLHRLMGERAEYY 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            ++V   ++    G+   A  +GL+    + +AGVP  + LG++T ++++IP G P+++ 
Sbjct: 198 LQLVAGTVQRVVNGVIGTAAAQGLLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPPLAWI 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + +L+ KG    A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   
Sbjct: 258 PATGWLVWKGEYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAF 317

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           G +GLFIGP L+A+   +  +      +   + 
Sbjct: 318 GFIGLFIGPTLLAVGYSLLLDWSRNAAQQPPQQ 350


>gi|15597847|ref|NP_251341.1| hypothetical protein PA2651 [Pseudomonas aeruginosa PAO1]
 gi|107102172|ref|ZP_01366090.1| hypothetical protein PaerPA_01003222 [Pseudomonas aeruginosa PACS2]
 gi|218891187|ref|YP_002440053.1| hypothetical protein PLES_24531 [Pseudomonas aeruginosa LESB58]
 gi|254235633|ref|ZP_04928956.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254241080|ref|ZP_04934402.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|9948721|gb|AAG06039.1|AE004694_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|126167564|gb|EAZ53075.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126194458|gb|EAZ58521.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218771412|emb|CAW27179.1| putative exported protein [Pseudomonas aeruginosa LESB58]
          Length = 352

 Score =  139 bits (350), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 132/332 (39%), Gaps = 3/332 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + L  F+  V    I+     P+      +  +     A+I  +  + + I+P++F+ 
Sbjct: 22  FGWLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAALITLLICVLIVIIPVIFIA 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E   +  +V     +     +            +   +      S      + + 
Sbjct: 82  GSLVQEGASVYQRVKSGELNFAAYLQQAVAALP-PSVHQWLERFDLANLSSLQEKLSSVA 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   A   G   LD+ +S   M+  LFF  RDG  + +++      L   +   
Sbjct: 141 MQASQVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHH 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +      VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + 
Sbjct: 200 LFAKFTTVIRATVKGNIAVAATQGALGGLIFWLLGIEGALLWGTLMAFLSLLPAIGAALI 259

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+ 
Sbjct: 260 WAPVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMA 319

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             GL G  IGP++ AL    W       +E +
Sbjct: 320 LFGLNGFVIGPLIAALFMASWDLFTGREEEPQ 351


>gi|256833416|ref|YP_003162143.1| hypothetical protein Jden_2203 [Jonesia denitrificans DSM 20603]
 gi|256686947|gb|ACV09840.1| protein of unknown function UPF0118 [Jonesia denitrificans DSM
           20603]
          Length = 397

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 59/338 (17%), Positives = 115/338 (34%), Gaps = 16/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q I   +++ + L ++ +L   F PV+ ALII    +P+     ++   SS     +   
Sbjct: 48  QTIAVLLVVGLTLWAMAYLGVVFIPVVLALIISSAVFPLMRWLRAR-GMSSLLATWLVLF 106

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    L  +      +  +LVS                      +           
Sbjct: 107 SAFAVVGGLLTAIVQAVRSQWSDLVSSAQDG--------------FDELLVLLEDLPFEV 152

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P  L    ++ +           A         +       +I  FFF +DG +I + L
Sbjct: 153 DPAQLDDAKQSAIDFVTSSQFGSGAVAGLSATGTFFTGFFLTLIITFFFMKDGPAIWEFL 212

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +  +    ++I     + +     G   +A  + L +G       VP  + L VI 
Sbjct: 213 LRPLDGQYYDRARRIGDRSVRTMGDYIRGTATVAAVDALGIGLGLAFLQVPLALPLAVIV 272

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     ++    ++  L+ G I+ A  +     +   +    L+P ++G  + L
Sbjct: 273 FLTAFIPLVGATLAGFLAALVALVDGGIWPALAVVGIVIVVNQLEGNFLQPKIMGKTLSL 332

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             L    GL  G    G++G  +   + A+   I +  
Sbjct: 333 HPLVILIGLTAGTIIGGIVGAVLSVPIAAVAWGILQVW 370


>gi|184201420|ref|YP_001855627.1| hypothetical protein KRH_17740 [Kocuria rhizophila DC2201]
 gi|183581650|dbj|BAG30121.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 455

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 118/351 (33%), Gaps = 18/351 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  +++L G       PVL A +I     P      ++    S   A+   
Sbjct: 46  WRVLLIVAGVGVVWWLLGHVTTVLIPVLLAALIAGPLSPAVRWLRAR-HFPSALAAITVE 104

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ + +  L+      ++   +L  K V   Q  + +              +   K  
Sbjct: 105 LGLILVVLGLLVLSGQQIVVGFAQLSDKAVAGFQKLLGMLE------------DSPLKLT 152

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   S              + I   A  FG          I M+  L FF  DG +I   
Sbjct: 153 TDSMSQWFSELGNTLQENSNAILSGAMTFGSTAGSILTGTILMLFVLLFFLFDGENIWLF 212

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L      A      R     +         +A  + L +G   +L GVP  + +GV+
Sbjct: 213 LVKLFPRRARAAVNGAGRRGWISLAQYVRIQVFVAFVDALGIGLGAFLLGVPLALPIGVL 272

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP     ++     +  L+  +   A  +     +   I    L+P ++G  + 
Sbjct: 273 VFLASFIPIVGAVVTGAVAVLVALVAVSPGIALAMLGVVLLVQQIESNILQPLIMGKAVS 332

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L  +     +  G    G++G      +MA    I +       E+ ++I+
Sbjct: 333 LHPVAVLLAVATGSMLFGIVGALFAVPVMAFANTIVRYLAARSWEHDDQIA 383


>gi|260596705|ref|YP_003209276.1| hypothetical protein CTU_09130 [Cronobacter turicensis z3032]
 gi|260215882|emb|CBA28407.1| hypothetical protein CTU_09130 [Cronobacter turicensis z3032]
          Length = 367

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/338 (19%), Positives = 138/338 (40%), Gaps = 3/338 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     ++  + ++    +K + + VL A+I+    +P+           +   +++  V
Sbjct: 8   RAFFILILFIVSILFFNLVKPYLSAVLWAVILAVIFYPVKRRLCHMMNGRNNIASLLTVV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L  VPL  +    + E   L + +   +     +      I    WA ++  ++  
Sbjct: 68  LICVLVFVPLAVVASSLVREFNTLYTDLQANDTTFPTLLADGVRILP-DWAQQMLAENHL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  ++               +    M+  LFF  +DG  +   +
Sbjct: 127 DSAAAIQKKISGVALKGSQYVAGSIFLISRNTFSVVIGFGIMLYLLFFLLKDGSRLVAVV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +    L     +++ R    V R+T  G  ++AI +GL+ G A++ AG+ + +  G + 
Sbjct: 187 LNAVP-LSDKVKQRLFRRFAAVSRATVKGTVVVAIVQGLLGGVAFYFAGIGASILWGSLM 245

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P  GA + +    IYL   G I  A  L  +  + + + D  LRP LVG  I++
Sbjct: 246 AFLSLVPAVGAALIWVPAVIYLFTTGAIIKAVLLTAFFVVVVGLADNLLRPLLVGKDIRM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P        +GG+   G+ G  +GP++ AL    W   
Sbjct: 306 PDWLILLATLGGLEVYGINGFVVGPLIAALFVTCWNTF 343


>gi|257869140|ref|ZP_05648793.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803304|gb|EEV32126.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 374

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 119/342 (34%), Gaps = 6/342 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   PI    +   +    +  ++  + ++   ++ 
Sbjct: 32  FLFAPVGTFFSTLFAPVLIAGFLYYLLNPIVVFLMKTTKIKRIYAVILVLLLLVAAIVLT 91

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +    + ++ +L   +    ++       ++D P             +       LS
Sbjct: 92  VVSVIPNLINQISQLAENIPTFAKNMETWISKIADDPVFKQID------FAQQLENLNLS 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L    +  +               + I+ +   LF+  +DG  +   + S+      
Sbjct: 146 YGSLLQQFLSGLSTSLGSIVGTIASATMIIVTVPFILFYMLKDGEKLVPNIQSVLPEKRR 205

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               ++   + K + +   G  I  I         YWL GV      GVI  I  +IP  
Sbjct: 206 NQIIELLGDLNKTLSNYISGQAIECIFVATFTFIGYWLVGVNYAFLFGVIAGITNLIPYL 265

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + I  + F A    +   +   +    + P ++G  + +  L     L+
Sbjct: 266 GPYLGLIPAVLVTIFDDPFRALLCGVVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLL 325

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG+F+G    A+   I    I  I+++K K +  
Sbjct: 326 VAGNIAGLLGIFLGVPFYAICRTIVIFVIRLIRDDKSKKNQE 367


>gi|89895168|ref|YP_518655.1| hypothetical protein DSY2422 [Desulfitobacterium hafniense Y51]
 gi|89334616|dbj|BAE84211.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 344

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 119/341 (34%), Gaps = 9/341 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +I+ + L+ +  ++   +P + A ++ +   P+  + + +          +  V
Sbjct: 7   RWIFLIIIVLLSLLLILSVRPILSPFMLAFVLAYLLAPVVEALVRR-GVGRKISIALVFV 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++    + +  +     +E+ +L   +    +    V +                  L 
Sbjct: 66  GILLSLALLIFIVIPKLYIELSKLSQVLPETVRTLELVIQDFRANFRATGLPHQVVSVLD 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S             +D +P+  +   +  L          +   +   D   +    
Sbjct: 126 EHLSEGESFLIHWLEEFLDNLPKALTSMSLFILS--------PVIAIYLLADWQRLQAGF 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L        W+++ + +  ++RS   G  I+A+  G++ G    L G+   + +GVI 
Sbjct: 178 LRLVPQRKRVAWQRVVQDISHIVRSFIRGNVIVALIVGILTGVGVKLVGMDYALLIGVIC 237

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   P+     S+ L +  +   A  + +   I   +    + P L+G  + L 
Sbjct: 238 GVFDLIPYFGPLIGAVPSVLLGLIQSPMMALKVAIVILIVQQLESSIISPKLMGDSVGLH 297

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L   F L+ G    G  G+       A++ VI +     +
Sbjct: 298 PLWIIFALLAGGEIAGFWGMLFSVPFAAVLRVIIRHIYFWL 338


>gi|293374565|ref|ZP_06620884.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325845421|ref|ZP_08168715.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|292646814|gb|EFF64805.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325488553|gb|EGC90968.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 376

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 117/334 (35%), Gaps = 2/334 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +   S   +    +P L A II +   P+      + +        +     + L  + +
Sbjct: 33  VFFASFKDILATLSPFLLAFIIAYIFNPVMMFIEKRFKVKRNLSLSLTYFGFLLLCYLMI 92

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+F        +L+ ++              ++   G    EL            I   
Sbjct: 93  SFIFPVIYHSASDLIKQIPSYATEIQTWINGWTNQMSGFDFGEL--NEFKTQLLSMIPKV 150

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           T + T+ I  +         +  +  L+ I  I  L    +      + +  +       
Sbjct: 151 TEILTSSIGSLVSITYGAVTLTGNVLLAFIISIYILVEKEKFTEMSKKLIYIIFRPKNAG 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           Y  + SR+  + I    +G +I +I  G+       L G    V LGVI  +  M+P   
Sbjct: 211 YILQTSRLFHENIGKYLIGKSIDSIFVGICATIGLALMGAKYAVLLGVIFGLTNMVPFVG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           PI  T +++ + +  N   A    ++  I   +    + P +VG  + L    T   +  
Sbjct: 271 PIFGTLIAVGINLFYNPIVAIIALIFLLIVQQVESLIIDPKVVGQKMGLNPFFTLLAVTV 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G + MG++G+ +G  +M ++ +    +I    + 
Sbjct: 331 GGKLMGIVGMILGVPIMGVLKLYASNAINYYYDK 364


>gi|169828348|ref|YP_001698506.1| hypothetical protein Bsph_2843 [Lysinibacillus sphaericus C3-41]
 gi|168992836|gb|ACA40376.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 399

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 125/341 (36%), Gaps = 5/341 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI        +    P + A+I  +   P+ +  +  +     +  +I  ++V+ +  
Sbjct: 46  VSFIFTPLQVLFEVVILPGVLAVIGYYLLRPLLAILVRWR-IPRIWGILILYIAVVGVIT 104

Query: 76  VPLLFLFYYGMLEMKELVSKVVLAN----QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           + ++ ++ +   +   LV +         +  +               +  + + + +  
Sbjct: 105 LLVVLVYPFLRDQFTNLVQEFPEYFMKFTEKFVAFFNHSRFNDYLDKINFDYNEVVKNFT 164

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  + +     TN    +    + F        LS++ +   LF+  ++G  + + +  +
Sbjct: 165 TDMVKTVKDTATNIAQGVASGITGFLSTLTGIVLSLVTVPFILFYLLKEGEKLPKFMLKV 224

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I   + K I S   G  ++++  G ++   + + G+   + LG +  I 
Sbjct: 225 CPPRMRKEVTEIFHDMDKQISSYIQGQILVSMCIGAMVTIGFLIIGMKYALLLGFLAMIT 284

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +++P   P+     ++ + +  +      L +   I   I  K + P ++G  + +  + 
Sbjct: 285 SVVPYLGPVIAITPAVIIALVTSPLMLIKLAIVWTIVQLIEGKFISPQIMGKSLSIHPIT 344

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             F L+      G+ G+ +G    A+  V+        K+ 
Sbjct: 345 IIFVLLTAGSLFGVPGVILGIPGYAIFKVLVTHLFKLFKQR 385


>gi|239928556|ref|ZP_04685509.1| hypothetical protein SghaA1_10043 [Streptomyces ghanaensis ATCC
           14672]
 gi|291436882|ref|ZP_06576272.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291339777|gb|EFE66733.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 390

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 44/359 (12%), Positives = 103/359 (28%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +  +      + + L G    VL A  +     P  S   ++   
Sbjct: 7   RMPRWLPRAMVLALALVAVFQLGSWAFHQLTGLLINVLIAFFLALAVEPAVSWMAAR-GV 65

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +  ++V+      +  L      ++ ++V          I             
Sbjct: 66  RRGLGTFLVFLAVLIGAAGFVTLLGSMLAGQIIKIVEDFPEYLDSVINWFNTH------- 118

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +   L      + L  +      +              L     ++ + +  F+F
Sbjct: 119 -----FHTELRRVDIQEGLLRSDWLRTYVQNSATGVLDVSAQVLGGLFQLLTIGLFSFYF 173

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+          +   I             ++A+  GL          
Sbjct: 174 AADGPRLRRALCSVLPPARQVEVLRAWEIAVNKTGGYLYSRGLMALVSGLAHYVLLEFLE 233

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP    L V   +++  IP        A+ + +    + + A  + ++  +     +  L
Sbjct: 234 VPYAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLIFVVVYQQFENYVL 293

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P L    + +     F  +V G   +G +G  I    +A +       +       + 
Sbjct: 294 QPKLTSKTVDIHPAVAFGSVVAGTALLGAVGALIAIPAIATLQAFLGAYVKRYDVTDDP 352


>gi|75908450|ref|YP_322746.1| hypothetical protein Ava_2233 [Anabaena variabilis ATCC 29413]
 gi|75702175|gb|ABA21851.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 379

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 105/337 (31%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ +K     + +A+++  T   +   F  +         V+A V   
Sbjct: 7   IGLIAIVLSLYILWQIKEVLLLMFAAVVLATTLNRLAKRFQ-RSGVKRGLAVVLAVVIFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I     +      +  EL  +V    +        L           +   +    Q
Sbjct: 66  AIVIGFFWLIVPPFAEQFNELTYRVPQGFERFNGWINELRTRIPAQLVPYIPDLNSLIQQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         I+ +   +       L+  L ++ +++       D  +  +    L
Sbjct: 126 ----------AQPFINRVLGSSFAIVSGSLEVVLKVLLVLVLTGMLLADPIAYRKVFVRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      I       +     G  I     GL+      + GV + +ALGV+   +
Sbjct: 176 FPSFYRRRVDGILDKCEVSLEGWVTGAVIAMGVVGLMSVVGLSILGVKAALALGVLAGFL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ +    + +    + +   I        + P ++   + L    
Sbjct: 236 NLIPNLGPTLSVVPAMAIAFLDSPWKVVAVLILYFIIQQTESNFITPIVMAQQVSLLPAV 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +  V   G LGLF+   L  +  +  +E ++ 
Sbjct: 296 TLISQLFFVTFFGFLGLFLALPLTVVAKIWVQEVLIK 332


>gi|283458643|ref|YP_003363278.1| putative permease [Rothia mucilaginosa DY-18]
 gi|283134693|dbj|BAI65458.1| predicted permease [Rothia mucilaginosa DY-18]
          Length = 429

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 117/354 (33%), Gaps = 17/354 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS---SFISKKEESSTFLAVIATV 68
            R +++      ++   G  + ++ A+++      + S     + KK   +   A IA +
Sbjct: 36  WRLIVIAGAGWVVWKGLGHVSLLVIAMMVAMLLAALLSPTVMLLRKKGVRAGGAAAIAEI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    +       +     +  K +   Q  I             W  +L  +  +
Sbjct: 96  GMILVLAGIISLTGQQILRGFVSMADKAMQGYQQLI------------GWLKDLGYEFGA 143

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +       TN    +    SR G    D    ++  +  L FF  +G  I   +
Sbjct: 144 DQLNQLLEQMESAATNNPSSVLNGVSRVGSTAADVATGVLLTLFTLLFFLMEGERIWLFV 203

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             R   K + +      ++A  + + +G    + GVP  + LGV+ 
Sbjct: 204 VGLFPKDAREAVNGAGRAGWKSLGAYVRVQILVAAIDAIGIGLGAAILGVPLAIPLGVLV 263

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP    +       +  L+      A  +     +   +    L+P ++G  + L
Sbjct: 264 FLGSFIPVIGALFSGAVAVLLALVALGPVQALIMLGIVLLVQQVESHILQPLIMGKAVSL 323

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI-SSNF 360
             L   F + GG    G +G       +A++  + +       E+   +    F
Sbjct: 324 HPLAVIFSVAGGSMIFGAVGALFAVPTLAVVNSVVRYLADRGWEHDPNLRDEEF 377


>gi|241760550|ref|ZP_04758643.1| putative membrane protein [Neisseria flavescens SK114]
 gi|241319054|gb|EER55556.1| putative membrane protein [Neisseria flavescens SK114]
          Length = 356

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 120/337 (35%), Gaps = 8/337 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   ++   +  LY L     P + A ++ +   P+      K+       ++I    
Sbjct: 12  WIIMACVIAAFIWLLYALGDVLTPFIVAAVLAYVLNPLVEWLQLKR-IRRAPASMIIMAF 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  +L +    + +   L  ++               +   G +        ++ 
Sbjct: 71  ALLVLLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKLLPWLNSVSGDYIQIDQESIIAW 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            QS        LK      + +         +    ++  + + L++F  D    S  + 
Sbjct: 131 LQSHTDELSNTLKEWIPTLMRQS-----GNVISGVSNLALLPLLLYYFLLDWKRWSSGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIETYTRISGNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++        G+      ++    +  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATIAALLQYGSWQGLLMVWAVFGVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   + MG +G+  G  L A+  VI +E
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVILRE 342


>gi|319638220|ref|ZP_07992983.1| GNAT family Acetyltransferase [Neisseria mucosa C102]
 gi|317400493|gb|EFV81151.1| GNAT family Acetyltransferase [Neisseria mucosa C102]
          Length = 356

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 123/337 (36%), Gaps = 8/337 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   ++   +  LY L     P + A ++ +   P+      ++       ++I    
Sbjct: 12  WIIMACVIAAFIWLLYALGDVLTPFIVAAVLAYVLNPLVEWLQLRR-IRRAPASMIIMAF 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  +L +    + +   L  ++                +P     S  + +    
Sbjct: 71  ALLVLLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKL-----LPWLNSVSGDYIQIDQE 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                + S T   +N +        R     +    +++ + + L++F  D    S  + 
Sbjct: 126 SIIAWLQSHTDELSNTLKAWIPTLMRQSGNVISGVSNLVLLPLLLYYFLLDWKRWSSGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIETYTRISSNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++        G+      ++    +  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATVAALLQYGSWQGLLMVWAVFGVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L   F L+   + MG +G+  G  L A+  V+ +E
Sbjct: 306 SPLWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLRE 342


>gi|227834149|ref|YP_002835856.1| permease of the major facilitator superfamily [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183363|ref|ZP_06042784.1| permease of the major facilitator superfamily protein
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227455165|gb|ACP33918.1| permease of the major facilitator superfamily [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 411

 Score =  139 bits (350), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 109/334 (32%), Gaps = 14/334 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+    + +    L F+     PV+ A+++    +P+ +   +  +      ++   +  
Sbjct: 49  IIVVAGVGLAGYLLKFIWVGLLPVILAILVCTVLFPVTNWLRAH-KFPRALASITTLLGF 107

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +       +      +   LVS+        + +            A +L  +  +  
Sbjct: 108 LAIIGGVFAAMAPVVSSQGASLVSQAEGGLNKLVDM------------AKDLPFEIDAAK 155

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               +             I         +     + +  M+   FF  +DG      L +
Sbjct: 156 VQEVLDDAMTFIKGQASNIATGVISGVSMASSIAMELAIMLFVAFFILKDGDKFLPWLRT 215

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +  ++   V   +         +A  +GL++G   W   VP  + +GV+T  
Sbjct: 216 YTGYSAGWHATELLTRVWNTLSGFIQAQAAVAAVDGLLIGLGLWALQVPLALVIGVVTFF 275

Query: 251 MAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP    ++      I  L+   +  A        I   +    L+P L    + L  
Sbjct: 276 ASFIPVIGAVTAGALAVIIALVSDGLTKALLALALIIIVQQVEGNVLQPMLQSKAMGLHA 335

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +  G    G++G F+   + A IAV+++
Sbjct: 336 AMVLLSVTVGSALAGIIGAFLAVPVAATIAVVFR 369


>gi|29377087|ref|NP_816241.1| hypothetical protein EF2602 [Enterococcus faecalis V583]
 gi|257421813|ref|ZP_05598803.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294781398|ref|ZP_06746740.1| membrane family protein [Enterococcus faecalis PC1.1]
 gi|300860994|ref|ZP_07107081.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29344553|gb|AAO82311.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|257163637|gb|EEU93597.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294451525|gb|EFG19985.1| membrane family protein [Enterococcus faecalis PC1.1]
 gi|295113582|emb|CBL32219.1| Predicted permease [Enterococcus sp. 7L76]
 gi|300850033|gb|EFK77783.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
          Length = 389

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 50  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 108

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 109 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 168

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 169 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 224

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 225 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 284

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 285 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 344

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 345 FGIVGVILGIPVYAAAKVIITHIFEWYQ 372


>gi|49086714|gb|AAT51373.1| PA2651 [synthetic construct]
          Length = 353

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 132/332 (39%), Gaps = 3/332 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + L  F+  V    I+     P+      +  +     A+I  +  + + I+P++F+ 
Sbjct: 22  FGWLLLPFYGAVFWGTILAIIFAPVQRRLQVRLRDRKNLAALITLLICVLIVIIPVIFIA 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E   +  +V     +     +            +   +      S      + + 
Sbjct: 82  GSLVQEGASVYQRVKSGELNFAAYLQQAVAALP-PSVHQWLERFDLANLSSLQEKLSSVA 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   A   G   LD+ +S   M+  LFF  RDG  + +++      L   +   
Sbjct: 141 MQASQVVATKAFSIGQNTLDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHH 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +      VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + 
Sbjct: 200 LFAKFTTVIRATVKGNIAVAATQGALGGLIFWLPGIEGALLWGTLMAFLSLLPAIGAALI 259

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+ 
Sbjct: 260 WAPVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMA 319

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             GL G  IGP++ AL    W       +E +
Sbjct: 320 LFGLNGFVIGPLIAALFMASWDLFTGREEEPQ 351


>gi|319934792|ref|ZP_08009237.1| hypothetical protein HMPREF9488_00068 [Coprobacillus sp. 29_1]
 gi|319810169|gb|EFW06531.1| hypothetical protein HMPREF9488_00068 [Coprobacillus sp. 29_1]
          Length = 381

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 116/352 (32%), Gaps = 8/352 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-----SSTFLAVI 65
           I+  M    I+  +  L     P +   I+ F        FI K             A++
Sbjct: 26  ILCLMNFGTIMSFIGTLISIIKPFIIGFILAFIFNIPMKYFIKKLPIENDKTRKLISAIL 85

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + + VM +  + ++ +    +  ++ L+  +    +       WL+     +  S     
Sbjct: 86  SVLLVMLVIAIVIMVVLPQVIENVRTLIDNLPEIFKQIE---EWLNYFLKEVKISPDIMT 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +   Q     +     +  +  I    S F    ++  +  +  I  LF   +    + 
Sbjct: 143 KVEEFQQTLGQTILSKLSTWVPGIALGVSHFTTGVINIFMGFVMAIYMLFSKDKLMRQVK 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   +        +   ++++      +   G    ++  G++      L  +P      
Sbjct: 203 RVGKAFLTEKQFYHATDVAQLTSSTFENFLAGQLTESVIIGVLCYIGCILLDIPYASIAA 262

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+     +IP   PI    +S  L++  +   A    ++  +        + P +VG  +
Sbjct: 263 VVIGFTNIIPYFGPIIGAFISSVLIVFVSPMKAVIFLIFSTLLQQFESNLIYPHVVGNSV 322

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L  L   F +  G    G+ G+  G    ++I  + +         K+++S
Sbjct: 323 GLSALWVLFAVSAGGGLFGIPGMIFGLPTFSVIYELLRRWTNHRLNQKKQLS 374


>gi|321312725|ref|YP_004205012.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
 gi|291485630|dbj|BAI86705.1| hypothetical protein BSNT_04678 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018999|gb|ADV93985.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
          Length = 369

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 118/351 (33%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKE 56
                Q +   +I+F+     +  + F         P+L A I+ F   P+      K  
Sbjct: 7   HFWTLQILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKK-- 64

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              T   ++  +  + L       +      ++  L + +    +    + + LS     
Sbjct: 65  IPRTLSILLIYLLFIGLLAFISASVGPIITSQVTGLFNNLPDYIKQIQALTKDLSHSQWF 124

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            W             S    S T    N    I    S    +  +  L II +   LF+
Sbjct: 125 TW----MMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFY 180

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG         +    +     KI + +   + + F G  +I +  G      Y +A
Sbjct: 181 MLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA 240

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+P  + LG++ AI  +IP   P    A ++ +    +   A    +   I   +    L
Sbjct: 241 GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLL 300

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            P ++G  +    L     L+G     G+LG+ +   + A++   +   + 
Sbjct: 301 SPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVR 351


>gi|225075831|ref|ZP_03719030.1| hypothetical protein NEIFLAOT_00847 [Neisseria flavescens
           NRL30031/H210]
 gi|224952777|gb|EEG33986.1| hypothetical protein NEIFLAOT_00847 [Neisseria flavescens
           NRL30031/H210]
          Length = 356

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 125/345 (36%), Gaps = 8/345 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++T      I+   ++   +  LY L     P + A ++ +   P+      K+      
Sbjct: 4   KKTRSVKPWIIMACVVAAFIWFLYALGDVLTPFIVAAVLAYVLNPLVEWLQLKR-IRRAP 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            ++I     + + +  +L +    + +   L  ++                +P     S 
Sbjct: 63  ASMIIMALALLILLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKL-----LPWLNSISG 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            + +         + S T   +N +        R     +    +++ + + L++F  D 
Sbjct: 118 DYIQIDQESIIAWLQSHTDELSNTLKAWIPTLMRQSGNVISGVSNLVLLPLLLYYFLLDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  +  L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S 
Sbjct: 178 KRWSSGISKLVPRRFIETYTRISGNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSG 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            A+G+I  I+  IP     +   ++        G+      ++    +  F+    + P 
Sbjct: 238 FAIGMIAGILVFIPYLGAFTGLLLATVAALLQYGSWQGLLMVWAVFGVGQFLESFFITPK 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +VG  I L      F L+   + MG +G+  G  L A+  V+ +E
Sbjct: 298 IVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLRE 342


>gi|313901320|ref|ZP_07834807.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312953928|gb|EFR35609.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 394

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 108/330 (32%), Gaps = 8/330 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCLF 74
           +  ++  + G   P +  +++ F        F+ K             AV + + +  + 
Sbjct: 37  VFDTVSMIIGMLRPFIYGIMMAFVFNIPMKFFLKKLPDNLGRWKKALAAVCSLLIIFGIL 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  +    +  +  L + +    +        ++ +       +   K +    +  
Sbjct: 97  AFIVRIVMPQVIESIASLANSLPGYIEDAQKT---ITSMIEKQQIPQDVLKQVDTYSAQL 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +   L  NGI  +   AS F     +  ++++  +       +      + L +    
Sbjct: 154 QDTLVNLLKNGIPHLLTMASGFASSLANVFMALVIAVYLTVSKDKLLEQSHRFLYAFTSS 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              A+  +++ +      +   G  + A+  G++      + G P    LGVI     +I
Sbjct: 214 RANAFVLRVAHLTNTTFSAFITGQLVEAVIIGVLCYIGCLVLGFPYAPILGVIIGCTNII 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I    +   L+   N        ++G          + P +VG  + L  L   F
Sbjct: 274 PIFGAIFGVVLCALLVAFVNPLQGVFFVIFGICLQQFESNLIYPRVVGTSVGLSGLWVLF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +  G    G  G+ +G    ++I  + +E
Sbjct: 334 AITVGGGLFGFAGMLLGLPTFSVIYSLLRE 363


>gi|257080067|ref|ZP_05574428.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256988097|gb|EEU75399.1| conserved hypothetical protein [Enterococcus faecalis JH1]
          Length = 394

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 108/337 (32%), Gaps = 2/337 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI             PVL  +I+ +    +      K      +   I  V ++ L +
Sbjct: 37  VSFIFKPIFVIFSAVLGPVLFGIILFYLLNSMVKRLEKK--IPRVWAIAILYVLIIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L LF     + +EL+ +     +  +   +            E   + ++       
Sbjct: 95  LAGLQLFPIIQDQTEELIKQFPSFWKSTLQTVQEFMAKTPFAKDLESANESINQLWGKLA 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S      + +    +             L++    I  FF  +D     + +  +    
Sbjct: 155 NSFKDFAGDYLQTGAQGLGSVFSAVSSTFLTLFTGPIIAFFLLKDKEKFYRFVKGIIPPA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + + S+I    I     G  I ++  G++   A+ L G+     L +   I+ +IP
Sbjct: 215 FRPDFDEYSQIANIQIGDYLKGQVIASLVLGIMYWPAFLLIGLQFGSILALAAGILCIIP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F      +       I    + P ++G  +K+  +     
Sbjct: 275 YIGPFIAFIPGLIIAFQDSTFMVVKFVIVWFAIQLIHGDFVIPRVMGDKLKVHPITILLV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+      GL+G+  G  +  L+ V         K+ 
Sbjct: 335 LLVMGELFGLMGVIFGIPMYCLVKVTVIYLFRKFKQR 371


>gi|147677394|ref|YP_001211609.1| permease [Pelotomaculum thermopropionicum SI]
 gi|146273491|dbj|BAF59240.1| predicted permease [Pelotomaculum thermopropionicum SI]
          Length = 349

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 119/336 (35%), Gaps = 9/336 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +   ++  +     YF++G     + A  I +   P+ ++   +     T   ++A 
Sbjct: 13  RSILFFAVMAVMAAGLFYFMRGLVFSFVLAAFITYLLNPLVNAIEKR-GAPRTSAILMAY 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +++        ++     + ++  L   + +       +   +     G+   +   + +
Sbjct: 72  LALFIFVAGVFMYGMPRIIEQLNVLAETLPVYTGRAREIIDSIQARYTGLGIPDGVRQII 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               S        L    +  +   A         Y   I+   +  F+F +D   I ++
Sbjct: 132 DEWVSSLEGGIMHLLKEAVAALIGMA--------GYIFKILLAPVLAFYFLKDFDLIKRK 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +       +     ++ R + KV+ S   G  ++A   G +   A  + GV   + LG+ 
Sbjct: 184 ITMFIPESYREEVFELFREIDKVLGSFIKGYILVAAMVGGLSAIAMAVLGVEFALMLGLF 243

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +IP   P+     ++ L    + + A  + +   +   +    + P ++G  + L
Sbjct: 244 AGLTELIPYFGPVIGAVPAVGLAALKSKWLAVKVAIAFFVIHQLEGNIISPKILGNKVGL 303

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L   F L+ G +  GL G+ +     A+  V+  
Sbjct: 304 HPLVIIFSLLAGEKLYGLTGMLLAVPAAAVFRVVLN 339


>gi|170690529|ref|ZP_02881696.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170144964|gb|EDT13125.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 690

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 101/350 (28%), Gaps = 15/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIAT 67
            ++   +    +  LYF +    P+  A+++ F   P+       K     S F AV+ +
Sbjct: 27  ALIALAVGAGFVACLYFARAVLIPMTLAILLSFLVAPLVKWLGRLKLGHVASVFAAVVMS 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +SV+ +    +          M    + +    +    +     D         L    +
Sbjct: 87  ISVIGVLGAVITMQLSDLAAGMPRYQATIERKMEAAHTLTVGKLDRFAKAAGQALQRATV 146

Query: 128 SHPQSLKILSETFLKTNGIDFI-----------PRFASRFGMIFLDYCLSIIFMIIALFF 176
             PQ       +         +              A R     +    +   + + +  
Sbjct: 147 EPPQPEPRHDASSSDGRAPAAVPVEVREPVPTPLEVARRVLSPAISPLETAFIVFVVMVV 206

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +   L           +     + +   F+    +    G+ +G+  +  
Sbjct: 207 ILLQRDDLRDRAIRLFGSRDLHRTTMVMDEAARRLSRYFVSQLGLNAALGVAIGAGLFFI 266

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDK 294
           GVPS +  G++ A++ ++P         ++  L          A            +V +
Sbjct: 267 GVPSPILWGILAALLRLVPYVGIWIAGGLATALAAAVSPGWDMAIWSIALFVTVELLVGQ 326

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 327 VVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRH 376


>gi|167840497|ref|ZP_02467181.1| Predicted permease PerM family protein [Burkholderia thailandensis
           MSMB43]
          Length = 352

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 125/327 (38%), Gaps = 3/327 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  FF  +    I+     P+     ++  +     A++    ++ + I+PL F+   
Sbjct: 24  WILTPFFGAIFWGTILAILFQPVQRWLAARFGKRRNLAALVTLSLIILIVILPLAFVTAT 83

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+     ++     +     +             L    L+    ++          
Sbjct: 84  LVQEIAYAYQQIKTLQPNMTQYFQEFMHALPSSVHRVLHNYGLTDIAGIQKKLTDG-AAA 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              F+   A   G     + +S   M+  +FF  RDG  I +++      L  A+ + + 
Sbjct: 143 ISQFVAAQALSIGQNTFQFVVSFGVMLYLVFFLLRDGGEIGRRVRRALP-LNEAHKQHLL 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
                V+R+T  G   +A  +G + G  +W+ G+   +  G + A ++++P     + + 
Sbjct: 202 TKFTTVVRATVKGNIAVAAVQGALGGLIFWILGIEGVILWGALMAFLSLLPAIGAGLVWV 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + Y  + G ++    L  +    + +VD  LRP LVG   K+P        +GG+   
Sbjct: 262 PAAGYFAVTGQVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKMPDWVVLISTLGGMALF 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIK 350
           G+ G  IGP++ AL    W       +
Sbjct: 322 GINGFVIGPLVAALFMASWDLFARTEQ 348


>gi|313499673|gb|ADR61039.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 354

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 141/339 (41%), Gaps = 3/339 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  ++  + +   + L  ++  +  A+I+G    P+    + +        A  +T
Sbjct: 7   QNKALAVLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRCGRRRNLAAGTST 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+P++      + E   L  ++               D+        L    +
Sbjct: 67  LVCLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQRGLDNMGM 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF RDG  ++++
Sbjct: 127 GNLDGLRDKITKW-ATQGSQALASQAFSFGQGTFEFLISFGIMMYLLFFFLRDGPEVARR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     +++     +V+R+T  G  ++AI +G + G  +W   +PS +   V+
Sbjct: 186 VRMAVP-LPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWALDIPSALVWAVL 244

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAVGAGIIWAPVAAYFLLTGAILQGVVLTAFGVLVIGLVDNVLRPILVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P        +GG+   GL G  IGP++ AL    W   
Sbjct: 305 MPDYLILVSTLGGLAVFGLNGFVIGPLIAALFVSSWAIF 343


>gi|227832774|ref|YP_002834481.1| transporter of the putative permease family [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262182735|ref|ZP_06042156.1| transporter of the putative permease family protein
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227453790|gb|ACP32543.1| transporter of the putative permease family [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 497

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/340 (18%), Positives = 111/340 (32%), Gaps = 17/340 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +   +I   +  S   L  F     PVL ALII     PI S+   +K   S   A + 
Sbjct: 64  ALRLTIIGIFLYASFRMLGNFWRGILPVLIALIICTVLAPIASAM-RRKGLPSALAAAVT 122

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +          +F+      + + L  + V   Q               +WA       
Sbjct: 123 ILVSFTAVGALFMFIAPDFARQSQTLYLQTVEGIQRLQ------------LWAQGPPLNL 170

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +      I             I               +++  +++  FFF +DG +   
Sbjct: 171 DADEIGGYIDEIALWLQRQAGSIAGSVFTGIGTATSIVVTLFIIVVLTFFFLKDGHNFLP 230

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L          +  ++   V   +        +++  + + +G    L GVP  +AL +
Sbjct: 231 WLRQATGRRTGWHLTELLTRVWSTLGGFVRAQAVVSAVDAVFIGLGLALIGVPLAMALAI 290

Query: 247 ITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT I   IP    I   A+S+   L+      A  +     +   +    L P+L    +
Sbjct: 291 ITFIAGFIPFVGAIVAGALSVTIALVSLGFTKALLVLGLVLLVQQLEGNVLSPWLQSKAM 350

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L  +     +  G    GL+G F+     A IAV+++  
Sbjct: 351 NLHPVIVLISVTVGSALFGLIGGFLAVPAAATIAVVYRYF 390


>gi|306825324|ref|ZP_07458666.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432760|gb|EFM35734.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 388

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFAKNVPTYLEDADRVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L  + + +  ++++  F S    + +        +   LF+  RDG  +   L     + 
Sbjct: 161 LWASKISSQAVNWVSAFISSVSQVIVAVI----IVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|104782634|ref|YP_609132.1| hypothetical protein PSEEN3611 [Pseudomonas entomophila L48]
 gi|95111621|emb|CAK16342.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 350

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 148/332 (44%), Gaps = 5/332 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +  F + +L   I+ F SWP+            T  A + T   + L  +PL++L + 
Sbjct: 22  WVMAPFISALLWGAILAFASWPLMRLLTRLLGGRETLAASLLTTVWILLVALPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +++  + V           P W+  IP        W + L    +  + S      
Sbjct: 82  LADHIRDATAFVRDVQVDGLPDAPAWVGSIPFVGGRLVSWWESLDQQGAALLASAKPYLG 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +++   +++ G   L+  LS++F+     FFYRDG  ++  +  L   L     +  
Sbjct: 142 QVGNWLLARSAQIGSGVLELTLSLVFVF----FFYRDGPRLAAFVHRLLHRLVGERAEYY 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +V   ++    G+   A  + L+    + +AGVP  + LG++T ++++IP G P+++ 
Sbjct: 198 VDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPPLAWI 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + +L+ KG+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   
Sbjct: 258 PATAWLVSKGDYGMAVFLGIWGTFVISGVDNVLKPYLISRGGNLPLVIVLLGVFGGLIAF 317

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G +GLFIGP L+A+   +  +      ++  +
Sbjct: 318 GFIGLFIGPTLLAVGYSLLLDWSRNSAQHTPQ 349


>gi|186682624|ref|YP_001865820.1| hypothetical protein Npun_R2290 [Nostoc punctiforme PCC 73102]
 gi|186465076|gb|ACC80877.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 383

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 105/337 (31%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ ++     + +A+++  T   +   F  +      F  ++A     
Sbjct: 7   IGLIAIVLSLYILWQIREVLLLMFAAVVLATTLNRLAKRFQ-RFGMKRGFAVLLAVAIFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     +      + +EL  +V             L           +   +    Q
Sbjct: 66  AGIVGFFWLIVPPFAQQFQELTYQVPKGFGRFNTWLDALRTHIPNELVPYIPDINSLIQQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         ++ +   +  F    L+  L I+ +++       D  +  +    L
Sbjct: 126 ----------AQPFVNRLLGNSFAFVSGSLEVVLKILLVLVLTGMMLADPLAYRKVFVRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    + I       +     G  I     G++      + GV + +AL ++    
Sbjct: 176 FPSFYRRRVEGILNKCEVSLEGWITGAFIAICVVGVMSLVGLSILGVKAALALAILAGFF 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ +      + A  + +   I   +    + P ++   + L    
Sbjct: 236 NLIPNLGPTMSVIPAMAIAFLDEPWKAIAVLILYFIIQQVESNFITPVVMAHQVSLLPAI 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +  V   G LGLF+   L  +  +  +E ++ 
Sbjct: 296 TLIAQLFFVTFFGFLGLFLALPLTVVAKIWLQEVLIK 332


>gi|296876177|ref|ZP_06900231.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
 gi|296432888|gb|EFH18681.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
          Length = 391

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 106/335 (31%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +    F      PV+ + ++ +   PI      K      F   +    +  L I
Sbjct: 42  ITFIFIPIFEFAGAVMLPVIISGLLYYLLNPIVDFLERK-GLKRIFAISLVFFLIAVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +          D            +      +   
Sbjct: 101 WGLAVVIPAVQRQVVSFFHNLPTYLEKANATIDDFLDNRVSSDIKPQLDEITKELSANIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +    ++++         + +        M   +F+  RDG ++   +       
Sbjct: 161 SWASSISGRAVNWVSNLIGVASQVIVALI----IMPFIVFYLLRDGKNLKGHIVRFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++   V   + +   G   +AI   ++    + + G+   V LG+   I+ +IP
Sbjct: 217 IRKSAEQVLSDVNTQLSNYVRGQITVAIVVAIMFIVFFKIIGLRYAVTLGISAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +  A+E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLVAGPEMFIKVLIVFAVEQTIEGRFVSPLVLGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+F+G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVFLGIPVYASAKVVIGAIFEWYK 371


>gi|240850720|ref|YP_002972120.1| permease protein [Bartonella grahamii as4aup]
 gi|240267843|gb|ACS51431.1| permease protein [Bartonella grahamii as4aup]
          Length = 403

 Score =  138 bits (349), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 104/327 (31%), Gaps = 11/327 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   ++ ++       P ++ +++ +   PI      +      F  V+ T
Sbjct: 47  RQIFFWLSTLIFFVLFMFVFGSILLPFVAGIVLAYFLNPIVQLLE-RFGIRRVFGTVLIT 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + ++  F+  L+ L      ++++ +S  + +                   +      + 
Sbjct: 106 LFIVITFVAALVILIPVISWQIQQFMSDGLPVYINRIQTFFVEHDFDWIRRYFGSDPNEL 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ +           ++ I  +     + G   ++     +   +  F+   D   +  
Sbjct: 166 RNNIKGFLGE-----GSDFITSLLNSLLKSGKSIVNIVSLFVVAPVVAFYMLLDWPRMVT 220

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DSL         + I   + + I     G   + +  G        +AG+   + +G+
Sbjct: 221 AIDSLIPRDHLETVRSIFHEMDRAIAGFVRGQGTVCLILGGYYAIGLTIAGLNFGLLIGM 280

Query: 247 ITAIMAMIPGGAPISFTAVS----IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ +P    +S   +S           N      +     I  FI    L+P LVG
Sbjct: 281 FIGLISFVPYIGTMSGLVLSVGIAWVQFYPNNWGGIIVVMALFLIGQFIEGYILQPKLVG 340

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             + L  +   F L       G  G+ 
Sbjct: 341 SSVGLHPVWLMFSLFAFSSLFGFTGML 367


>gi|256828705|ref|YP_003157433.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256577881|gb|ACU89017.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 365

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 126/326 (38%), Gaps = 5/326 (1%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            F+  +  A IIG    P+Y   +   +      A+   +    + I+P LF+      E
Sbjct: 37  PFWGAIFWACIIGLIFSPMYQRLLRMGKPKPNLAALGTLLICFVIGIIPSLFVIISFFRE 96

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L +++             +      +     +        +      +        +
Sbjct: 97  GASLYNRLKSGEFDIADRIDKVQTAFPSIKN---FFDRFDLDINSIQAQLSDFALTSSGY 153

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I + A   G   L + +++  M+   FF  RDG  +   L      L       +     
Sbjct: 154 IAQNALALGQGTLQFFVALGLMLYMAFFMLRDGDKLVATLVRALP-LGNEREYLLFNKFA 212

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSI 267
           +V+R+T  G  ++A  +G++ G  +W+  +   +  GV+  ++++IP     + +  V+I
Sbjct: 213 EVVRATVKGNLLVAAVQGILGGFIFWVLDIHGALLWGVVMTLLSLIPVIGAGLIWGPVAI 272

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL   G + +   L  +GA  + + D  LRP LVG   KLP        +GG    G+ G
Sbjct: 273 YLFAIGELSHGVILVAYGAGVIGLADNILRPLLVGRDTKLPDYIVLLSTLGGFSLFGMNG 332

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
             +GP++ AL    W+  I     +K
Sbjct: 333 FVLGPLVAALFIAFWEIFIREFNTSK 358


>gi|84501590|ref|ZP_00999762.1| membrane protein [Oceanicola batsensis HTCC2597]
 gi|84390211|gb|EAQ02770.1| membrane protein [Oceanicola batsensis HTCC2597]
          Length = 357

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 116/342 (33%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I L++L+++     P L    + +   P+          S      I T+  + +F
Sbjct: 14  IAAAIFLLALWWMGDVILPFLLGGAVAYFLDPVADRIED-AGASRAVATAIITLFGLLIF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +    + +  +L   V     +                +               
Sbjct: 73  VLLALLVIPNLIDQAIQLFDTVPKVLHNFQAFL----------TSRFPELLDDGSTIRRS 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + S      +    +   A       ++  +  + + +  F+   D   + + +D L   
Sbjct: 123 LTSVGETIQSRGGQLLETALTSVGSLINIVMLFVIVPVVAFYLLYDWDRMMEDIDDLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++R + + + S   GM  + +  G     A  L G+   + +G +  ++  I
Sbjct: 183 EHAPAIRRLAREIDETLASFIRGMGTVCLILGTYYAIALMLVGLQFGLVVGAVAGLITFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+  +   +     +   +    L P LVG  + L  + 
Sbjct: 243 PYVGALVGGALAIGLALFQFWGDWVSIGLVAGIFVLGQVVEGNILTPKLVGDSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F L       G +G+ +   + A I V+ +  +   KE++
Sbjct: 303 LIFALSVFGSLFGFVGMLVAVPVAAAIGVLMRFVVSQYKESR 344


>gi|330875659|gb|EGH09808.1| hypothetical protein PSYMP_10962 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 348

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 157/350 (44%), Gaps = 5/350 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVAL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         +++   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMATLKPHLGQVGNWVLARSAQIGSGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +   
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARN 347


>gi|313887849|ref|ZP_07821529.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846192|gb|EFR33573.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 402

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 109/349 (31%), Gaps = 14/349 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVS 69
           I   L  L G  AP +   +I F      + F  K           +   T    I+ + 
Sbjct: 46  IFSGLGVLLGVIAPFILGGVIAFIMKIPLNFFERKVLDKIKNEKFQKHKRTISIAISFIV 105

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++    +    +    +    EL   +    Q  I   R +  +       +    +LS 
Sbjct: 106 IILAIFIITAIIVPQLINSFNELRKSLPSFLQMAIDKTREIPYLSNYSDKLQAEYDNLSW 165

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +    +           +I   A       L   +S    +I   +   D   +  Q  
Sbjct: 166 NEIFNRVRSFVKSDEQSSYILNSALSTASSILGGLVSFFLALITSIYILADKERLGYQAT 225

Query: 190 SL----GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +      +        ++ ++ +       G   ++   G+       L  +P+   +G
Sbjct: 226 RICYSCFNNKVANKILHVAHLLHENFFGFIRGQLTVSSFIGIATFVCCLLLRIPNAATIG 285

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  ++P   P    A++  +++  +        +   I   I    + P LVG  +
Sbjct: 286 VIVGVTDLVPIIGPFIGGAMAFVMIVIEDPTKGLMFIVLILILQQIESNLVYPKLVGNEV 345

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP L T   +  G    G++G++    L + +  + KE        K 
Sbjct: 346 GLPSLWTLVAITIGGSLFGVVGMWAFIPLASTLYALMKEYTEYKINEKN 394


>gi|269202981|ref|YP_003282250.1| hypothetical protein SAAV_1339 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|262075271|gb|ACY11244.1| hypothetical protein SAAV_1339 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940856|emb|CBI49238.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|283470573|emb|CAQ49784.1| membrane protein YubA [Staphylococcus aureus subsp. aureus ST398]
 gi|298694658|gb|ADI97880.1| probable membrane protein [Staphylococcus aureus subsp. aureus
           ED133]
 gi|312829754|emb|CBX34596.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|323441143|gb|EGA98850.1| hypothetical protein SAO11_0210 [Staphylococcus aureus O11]
 gi|323444011|gb|EGB01622.1| hypothetical protein SAO46_0121 [Staphylococcus aureus O46]
 gi|329314036|gb|AEB88449.1| Membrane protein YubA [Staphylococcus aureus subsp. aureus T0131]
 gi|329727689|gb|EGG64145.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329730893|gb|EGG67269.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21189]
 gi|329733547|gb|EGG69875.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21193]
          Length = 382

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 121/330 (36%), Gaps = 5/330 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +   K   AP++ +LI+ +   PI +     +         I  ++V+ +  + +  L 
Sbjct: 36  FIIVFKTIAAPIIVSLILFYLFNPIVNMMERYR-IPRVAGISIIYLAVVGVITLIVNLLI 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  LV       +  I     +++          +   ++   +        + 
Sbjct: 95  PIIGSQVDSLVKNSPQYLEKLINSIDKIAN----NTFFSSYYSQINDWLNSLPKKIPSML 150

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +   D      + F     +  + I+     LFF  +DG    +   ++    F   +  
Sbjct: 151 SEFTDGFGSKIATFAETIANIGVVIVTTPFVLFFMLKDGHHFKEFSTNIMPPKFRKDFHD 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   + S   G  I++   G++L   Y + G+   + L  I A+ +++P   P   
Sbjct: 211 LLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYSLVLASIAAVTSVVPYLGPTIA 270

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            + +I +    + +    L +   +  F+    + P ++G  +K+  L   F L+   + 
Sbjct: 271 ISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHPLTIIFILLCAGKL 330

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +G++G+ +G    A++ V+        K  
Sbjct: 331 LGIVGVILGIPGYAILKVLVTHLFQLFKRR 360


>gi|58580922|ref|YP_199938.1| permease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84622857|ref|YP_450229.1| permease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188578098|ref|YP_001915027.1| permease [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58425516|gb|AAW74553.1| permease [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84366797|dbj|BAE67955.1| permease [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|188522550|gb|ACD60495.1| permease [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 388

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 125/345 (36%), Gaps = 8/345 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S     ++  V
Sbjct: 14  RRLKWAAVIVGVLWVISLLAPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNAAVMLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LF++ L+ L      ++  L+  +       I                +L      
Sbjct: 73  LATLLFVLALMILVPMIERQIMTLIEALPQMRNWAIGTA---IPWLEAKTGMQLMAWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S           +  + SR G   +++ +++  + I  F+F RD   + ++ 
Sbjct: 130 ERLIDWIRSHWEQAGGVAKTLFGYVSRSGFAMVNWVINLALLPILAFYFLRDWDRLVERG 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     +++R    V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVVPRAYIGTVSRLARESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +    
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHEQY 354


>gi|306833219|ref|ZP_07466348.1| membrane protein [Streptococcus bovis ATCC 700338]
 gi|304424586|gb|EFM27723.1| membrane protein [Streptococcus bovis ATCC 700338]
          Length = 395

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 61/361 (16%), Positives = 125/361 (34%), Gaps = 19/361 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
            LN Q ++  +I F++ ++LY              F+     P++ + I+ +   P+   
Sbjct: 18  FLNNQAVVAVLITFLVFLTLYLFTKISFLFTPIISFIAIIMLPLVISAILYYLIKPLVGF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +   S T    I    ++ L I  +         ++   V  +    +         
Sbjct: 78  IEKR-GVSRTTSIFIVFAIIIALLIWAVASFIPTIQEQLTSFVENLPSYVRSINVEANKF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            + P      E   + LS+  +  I        N ID+   FAS    + +   +S   +
Sbjct: 137 LESPWLANYQEELEEMLSNVSTKAIDYAESFSKNAIDWASNFASAIARVTVAIIMSPFIL 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +F RD   + + L             ++   + K +     G   +AI  G++  
Sbjct: 197 F----YFLRDSGKMKEGLLKTLPTRMRRPISRVLGDINKQLAGYVQGQVTVAIVVGIIFT 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+      G+I   + MIP           + + +         + +   IE  
Sbjct: 253 IFFNIIGLRYAATFGIIAGFLNMIPYLGSFLAMVPVVIMGVVQGPIMLIKVLIAFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+F+G  + A I V+ KE     K
Sbjct: 313 IEGRFVSPLVLGSKLSIHPITIMFILLTSGAMFGVWGVFLGIPIYASIKVVVKEIFEWYK 372

Query: 351 E 351
            
Sbjct: 373 R 373


>gi|295836186|ref|ZP_06823119.1| membrane protein [Streptomyces sp. SPB74]
 gi|295825895|gb|EDY42221.2| membrane protein [Streptomyces sp. SPB74]
          Length = 411

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 111/359 (30%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  +++         + + L G    VL A  +     P  S   ++   
Sbjct: 37  RMPRWLPRAMVSALLLIACFQLGTWAFHRLTGLLINVLIAFFLALAIEPAVSWMSAR-GM 95

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  I  + V+      +  L      +++ +V          I             
Sbjct: 96  RRGAATGIVFLGVLIFAAGFVTLLGSMLAGQIQNMVEDFPKYLDSVIK------------ 143

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           W +  +   LS  +    +  +      +              L     ++ +++  F+F
Sbjct: 144 WVNGTFHTDLSRLEVQDSVLHSDWLQRYVRNSASGVLDVSAQVLGGLFQLLTLLLFAFYF 203

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+      A   +   I             ++A+  G+     +   G
Sbjct: 204 AADGPRLRRALCSVLPPAKQAEVVRAWEIAVDKTGGYLYSRGLMALISGIAHYILFQALG 263

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P   ALGV   +++  IP        A+ + +    + + A  + ++  +     +  L
Sbjct: 264 IPYAPALGVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYAVWVLVFVVVYQQFENYLL 323

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 324 QPKLTARTVDIHPAVAFGSVIAGTALLGAVGALISIPAVATLQAFLAAYVKRYDVTDDP 382


>gi|254563129|ref|YP_003070224.1| hypothetical protein METDI4791 [Methylobacterium extorquens DM4]
 gi|254270407|emb|CAX26407.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens DM4]
          Length = 651

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 103/355 (29%), Gaps = 24/355 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +              V + +
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVN-----LLRRLRLGRVPSVI 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L +  +  +      ++  L   +             L     G  +      +  
Sbjct: 78  AAVLLALAVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQ 137

Query: 129 HPQSLKILSETFLKTNGID-----------------FIPRFASRFGMIFLDYCLSIIFMI 171
              + +         +                         A +     ++   ++  ++
Sbjct: 138 VHNATQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVL 197

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + + F       +  ++  L                   + + FL    +    G ++G 
Sbjct: 198 VVVVFLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAAGRLGTYFLAQLGMNATFGFIIGL 257

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIEL 289
             W  GVP+ +  GV +A+M  +P           + L               +   +  
Sbjct: 258 GLWFIGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVE 317

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    + P L G    L         +      G +GL +       + V+ + 
Sbjct: 318 PLFGHVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|315641494|ref|ZP_07896566.1| conserved hypothetical protein [Enterococcus italicus DSM 15952]
 gi|315482782|gb|EFU73306.1| conserved hypothetical protein [Enterococcus italicus DSM 15952]
          Length = 391

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 108/337 (32%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F        L     P + A+++ +   P+             +   +  ++V+ L +
Sbjct: 37  ISFFFTPFAIILFAILPPAIFAIVLYYMFHPLVHQLERFL--PRIWAVSLLFLAVIALLV 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + +F     ++ +L+ +          + +          A       L+   S   
Sbjct: 95  LGGVLIFPSIQEQLHQLIDEFPTIFSDVQQLVQNFFAKTPFADAINQSQSSLNEVWSKVG 154

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G   +    S      +      I       F  +D     +    +   +
Sbjct: 155 NFLENYLQKGAQGVGSVFSAVSTTLITLVTGPIIAF----FLLKDNHRFYETSKKILPPV 210

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I++IV + I +   G  I+++  G++    + L G+P    L +   I+ +IP
Sbjct: 211 MRKDANEIAQIVNQQIGAYLKGQIILSVILGIMYWPFFLLIGLPFSGILAIAAGILCIIP 270

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + + ++ +   A    +       +    + P ++G  +++  +   F 
Sbjct: 271 YIGPFVVFLPGLIIALQVSWMMAIKFLIVWFAVQAVHGHLVVPRVMGDKLQIHPVTIIFV 330

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+      GL+G+  G  +   I V+        K  
Sbjct: 331 LLVMAELFGLVGVIFGIPIYCFIKVLVIYLFRRFKRR 367


>gi|295681206|ref|YP_003609780.1| hypothetical protein BC1002_6421 [Burkholderia sp. CCGE1002]
 gi|295441101|gb|ADG20269.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 387

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 111/344 (32%), Gaps = 8/344 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q ++   +     + L+ L+    P L   +I +   P        +       A++  
Sbjct: 42  RQSLIWGAVALSAGILLWSLRAVLTPFLLGAMIAYILQPGVEWLARHR-TPRGLAALLMI 100

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                +     L  F     E+ E   +V         + +     P   W    ++  L
Sbjct: 101 SVFALVITSVALLAFLVIQQEVPEFARQVPSLAAKLEAILK-----PRLAWLGVSYSLDL 155

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  +   +      +      + R+    G + +    + + + + LF+   D      +
Sbjct: 156 ASVRDWVVAHLIASEQGAALTVWRYLGTSGNLMIAVVGNAVLVPLVLFYLLYDRHEAFTR 215

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L+S     +    +     + +++     G  ++          A  LAG+   + +G++
Sbjct: 216 LESFVPRRWLDRTRDFVAEIDRMMSQYLRGQLLVVAILAAFYPVALALAGLSVALPIGLL 275

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           TA+   IP     S  ++++        + +    + +   +   +    L P  VG  I
Sbjct: 276 TAVAVFIPYVGFASALSLALLAALLQFHDWYGLGAVIVVYGVGQILESAILTPRFVGERI 335

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L  L   F L+   +  G  G+ +     A+ A   +E     
Sbjct: 336 GLHPLAVIFSLLAFGKLFGFFGVLLALPASAVFASALRELRRRY 379


>gi|254284432|ref|ZP_04959400.1| permease [gamma proteobacterium NOR51-B]
 gi|219680635|gb|EED36984.1| permease [gamma proteobacterium NOR51-B]
          Length = 356

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 112/345 (32%), Gaps = 8/345 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +      I ++  Y L     P +   ++G+   P+     ++   S +       V  +
Sbjct: 12  LVIGAFAIAVLLFYVLHPILMPFVVGGLLGYLGDPVVDRLEAR-GWSRSGGVAAVFVIFI 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                 L FL    + ++ +LV ++    Q               +   +L         
Sbjct: 71  LGLSAILAFLIPMLLSQLDQLVRQIPEIYQWLAGDALPWFQSKMSLSPVKLPNIDWEQEL 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    S   L T+ +  +                +I  + +  F+  RD   + +    L
Sbjct: 131 AANWQSLGKLITDTLRRLTTSGIDVAT----ILFNIALIPVVAFYLMRDWDRLMEATLDL 186

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      +      V+ +   G  ++ + + L+      + G+   V LG    + 
Sbjct: 187 IPRPWQENLSLMVAEADDVLGAFLRGQFLVMLAQALMYSVGLLIVGLDVAVVLGTAAGLA 246

Query: 252 AMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++IP    +     S+ +      G       + L   +   I    L P LVG  I L 
Sbjct: 247 SIIPYAGAVVGVGSSLAVAWFQFGGEWLPLIWVALVFGVGQTIESWFLTPLLVGDRIGLH 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +   F L+ G +  G  G+ +   + A++ V  + +I   + + 
Sbjct: 307 PVAVIFALMAGGQVAGFTGVLVALPVAAVLLVFTRHAITHYRASD 351


>gi|329908669|ref|ZP_08274912.1| hypothetical protein IMCC9480_3662 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546658|gb|EGF31619.1| hypothetical protein IMCC9480_3662 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 352

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 142/335 (42%), Gaps = 3/335 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + L   + L  F   V  A ++     P++   +++  +  T  A+   +
Sbjct: 8   QKFFLFLLAAVTLAFGWILLPFIGAVFWAAVLALLFAPLHRRLLNRFGQRHTLSALATLM 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + I+PL  +      E   +  K+   +       + +         ++L    ++
Sbjct: 68  VVLFIVILPLTLIGVSLAQEGTLVYHKIRTGSLDFGTYFQQILAALPQWLVTQLQRVGMA 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L+      ++  G   I            D+ +    M+  LFF  RDG ++S ++
Sbjct: 128 DFTELQDKVSQVIRQ-GSQTIASQVLNITQNTFDFVIGFGMMLYLLFFLLRDGAALSARI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L     K++      VIR+T  G  ++A  +G + G  +W  G+   +  GV+ 
Sbjct: 187 RHAIP-LEREQKKQLVAKFATVIRATVKGNIVVAASQGTLGGLMFWFLGIQGALLWGVLM 245

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A+++++P  GA + +  V+IY L+ G I+    L  +G + + +VD  LRP LVG   ++
Sbjct: 246 AVLSLLPAIGAALIWGPVAIYFLLTGAIWQGVTLIAFGVLVIGLVDNILRPVLVGKDTQM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P        +GG+   GL G  +GP + A+    W
Sbjct: 306 PDYVVLISTIGGISVFGLSGFVVGPSIAAMFMAAW 340


>gi|281421273|ref|ZP_06252272.1| putative membrane protein [Prevotella copri DSM 18205]
 gi|281404808|gb|EFB35488.1| putative membrane protein [Prevotella copri DSM 18205]
          Length = 375

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 119/360 (33%), Gaps = 16/360 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY---FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M + +   + I    +  I+L  LY   +L     P   A    +  +P+     +K   
Sbjct: 1   MGKEITFDKFIRWAGVTLIVLAVLYMTNYLSSVLLPFFIAWFFAYLLYPVVKFIENKLHV 60

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +IA  + + +    L  +    + +  +L   +              + I   
Sbjct: 61  RIRALSILIAMGTAIAVIGGVLWLIIPPMIDQFDKLGEVLTRWLHQTTHTNNLTALIKDW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           + A++   +H    +      +T +                   L   ++ +  ++ +FF
Sbjct: 121 LQANQEQIEHFLKSKDFSDAIKTTMPKVFS------VVSQTATVLMSIVASMITLLYMFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D  +++     +       +W  + + V + + +   G  ++A+  G++    + + 
Sbjct: 175 ILLDYETLTANWVRIFPKKNRPFWSALMKDVERELNNYIRGQGLVALCMGIMFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELF 290
           G P  + LG++  IM ++P     +    +   +       +          L   +   
Sbjct: 235 GFPMAIGLGILIGIMDLVPYLHTFALIPTAFLAMLKAADTGQNFWLVFGLAVLVFCVVQV 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I D  + P ++G  + L        L      +G LGL +   L  LI   W+  +   K
Sbjct: 295 ITDMVVTPKIMGKAMGLNPAILLLSLSVWGALLGFLGLIVALPLTTLIIAYWQRYVTKEK 354


>gi|222085484|ref|YP_002544014.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722932|gb|ACM26088.1| permease protein [Agrobacterium radiobacter K84]
          Length = 376

 Score =  138 bits (349), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 108/325 (33%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++ I +V LY       P ++ + + +   P+      +   S     V+
Sbjct: 10  LKRQVTFWVVVLAIFIVFLYLFSSILLPFIAGMAVAYFLDPVADRLE-RIGLSRLMATVV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ +  F + L  +    + +  + V  +    Q    +      +    W       
Sbjct: 69  ILVAFVLFFALALTIVIPIIINQFNDFVQHIPGYVQQLQQLIAKTQTMVLPDWVRNQLGV 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +  ++     +F+       +       G   ++    ++   +  F+   D   + 
Sbjct: 129 IKDNFSNIMSEGLSFV-----GGLFAQIWSSGKALVNIISLMVVTPVVAFYMLLDWDRMI 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D+       A  ++I+  + + I     G   + I  G+  G    L G+   + +G
Sbjct: 184 AKVDAWVPRDQVATVRQIATEIDQSIAGFIRGQGSLCIILGVYYGVGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL---FLWGAIELFIVDKTLRPFLVG 302
               +++ IP    +    +++ + +     +   +           F+    L+P LVG
Sbjct: 244 FFAGMISFIPYVGSLVGLFIAVSVALVQFWPDYIWVGLTLAVFFTGQFLEGNVLQPKLVG 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L       G +G
Sbjct: 304 ESVGLHPVWLMFALFAFGALFGFVG 328


>gi|225022952|ref|ZP_03712144.1| hypothetical protein CORMATOL_02998 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944175|gb|EEG25384.1| hypothetical protein CORMATOL_02998 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 472

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 112/337 (33%), Gaps = 18/337 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +R +I+      ++ +         P++ A+I+    WP  +    K    +   A+IA 
Sbjct: 41  LRLLIIAAAAFVIWHILSQVWRGGLPIVLAIIVCTVLWPPVAWL-RKHGIPAGLAAMIAI 99

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +     F   +  +    + + + L  +     Q               +W         
Sbjct: 100 LGSFGGFGFLIWLIAPSVVNQSQTLYFQAFEGVQRLQ------------LWLQGPPMNLD 147

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 +I +      +    I         I     ++++ +++  FFF +DG      
Sbjct: 148 PSDLDDRIDTAAQWLQSKAGSIASEVFSGLGIASSVMVTMLVVLVLTFFFLKDGDKFLPW 207

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +       +  ++       +        ++++ + + +GS   + GVP  +AL V+
Sbjct: 208 LRGMVGQRAGWHLTELLTRGWITLSGFIRAQALVSLVDAVFIGSGLIILGVPLALALAVL 267

Query: 248 TAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T I   IP         +S+   L+   +  A    +   +   +    L P L    + 
Sbjct: 268 TFITGFIPIVGAFIAGTLSVTVALVSLGVTEAVITLIIVLLVQQLEGNILSPLLQSKAVN 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  +     +  G     + G F+     A+ AV+++
Sbjct: 328 LHPVVVLISVTVGGSLFNIAGAFLAVPFAAMAAVLFR 364


>gi|228901451|ref|ZP_04065636.1| hypothetical protein bthur0014_26410 [Bacillus thuringiensis IBL
           4222]
 gi|228965851|ref|ZP_04126925.1| hypothetical protein bthur0004_26730 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793842|gb|EEM41371.1| hypothetical protein bthur0004_26730 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228858159|gb|EEN02634.1| hypothetical protein bthur0014_26410 [Bacillus thuringiensis IBL
           4222]
          Length = 373

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 37  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 96  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 151

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 152 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 212 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 272 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 332 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 369


>gi|89095235|ref|ZP_01168157.1| transporter, putative [Oceanospirillum sp. MED92]
 gi|89080489|gb|EAR59739.1| transporter, putative [Oceanospirillum sp. MED92]
          Length = 366

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 123/350 (35%), Gaps = 7/350 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   Q     +   ++   +Y L    +P L   ++ + S PI     +    S T   +
Sbjct: 1   MTESQRWFFLIFALVMAGLVYLLAPILSPFLVGALLAYLSDPIADRLEA-AGLSRTTSVI 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  +++  + ++  L       ++++ L+ ++  A                 + AS    
Sbjct: 60  IVFIAMTAIVVMMFLLFIPKLGMQIQLLLERIPQAISLFENQVLPWLMSTFSLEASAFEF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +L       +   + +    +  + R +        +  L    + +  F+  RD   +
Sbjct: 120 SNLKSILIGDLQKTSDIMAQLLGGLTRSSMAIVAWVANLVL----IPVVTFYLLRDWDVM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++  L            +R   +V+ +   G  ++ +  G+V     W+ G+   + +
Sbjct: 176 MDKVKRLLPRNIEPKVSLWARECDEVLGAFMKGQLLVMVALGVVYAVGLWIVGLDLALLV 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+I  + +++P    I    V+         +      +     +   +    L P LVG
Sbjct: 236 GMIAGLASIVPYMGFIIGIVVAGVAAFMQFQDPIVLGYVGAVFIVGQMLEGMLLTPLLVG 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             I L  +   F ++ G +  G +G+ +   + A+I V+ +      K +
Sbjct: 296 DRIGLHPVAVIFAIMAGGQLFGFVGVLLALPVAAVIMVLLRHLHEGYKSS 345


>gi|319950224|ref|ZP_08024151.1| permease [Dietzia cinnamea P4]
 gi|319436128|gb|EFV91321.1| permease [Dietzia cinnamea P4]
          Length = 511

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 14/302 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP+    +   +   T  A+++ +  + L    +  +    + +  +L  +   A   
Sbjct: 71  VLWPVTGWMVRH-KVPKTLAALLSIIGSLGLLTGVIALIAPSIVSQSVQLADQTSEAITE 129

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                R                          +   +    +  D I             
Sbjct: 130 VQDWLR------------GPPLNIRDEQLDGLLDQLSSTLQDRGDQIASGVFSGVSAVGS 177

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + ++++ +++  FFF +DG      +          +  ++       +        I++
Sbjct: 178 FVVTLVLVLVLTFFFIKDGPRFLPFVRRNTGRTAGRHLTEVLTRAWNTLGGYIRAQAIVS 237

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCL 281
             + +++G A  + GVP   AL VIT I   IP     +      +  L+      A  +
Sbjct: 238 FVDAVLIGLALVILGVPLAWALAVITFIAGFIPIVGAFTAGALAVLIALVANGFTTAIIV 297

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +       +    L+P L    + L       G+  G    G++G F+   ++A++AV+
Sbjct: 298 LVVIIAVQQLEGNVLQPILQSRAMNLHPGVILLGVAAGSTLFGIIGAFLAVPILAVVAVV 357

Query: 342 WK 343
            +
Sbjct: 358 IR 359


>gi|240140619|ref|YP_002965099.1| hypothetical protein MexAM1_META1p4181 [Methylobacterium extorquens
           AM1]
 gi|240010596|gb|ACS41822.1| conserved hypothetical protein; putative membrane protein
           [Methylobacterium extorquens AM1]
          Length = 651

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 102/355 (28%), Gaps = 24/355 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +              V + +
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVN-----LLRRLRLGRVPSVI 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +  +      ++  L   +             L     G  +      +  
Sbjct: 78  VAVLLALAVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQ 137

Query: 129 HPQSLKILSETFLKTNGID-----------------FIPRFASRFGMIFLDYCLSIIFMI 171
              + +         +                         A +     ++   ++  ++
Sbjct: 138 VHNATQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVL 197

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + + F       +  ++  L                   + + FL    +    G ++G 
Sbjct: 198 VVVVFLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAAGRLGTYFLAQLGMNATFGFIIGL 257

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIEL 289
             W  GVP+ +  GV +A+M  +P           + L               +   +  
Sbjct: 258 GLWFIGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVE 317

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    + P L G    L         +      G +GL +       + V+ + 
Sbjct: 318 PLFGHVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|92114935|ref|YP_574863.1| hypothetical protein Csal_2818 [Chromohalobacter salexigens DSM
           3043]
 gi|91798025|gb|ABE60164.1| protein of unknown function UPF0118 [Chromohalobacter salexigens
           DSM 3043]
          Length = 363

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 111/353 (31%), Gaps = 12/353 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M     + + ++  +++ +   ++  L    AP  +AL++ F    + + F  +      
Sbjct: 11  MERYFSDEEAVVLLIVLVLGFAAVICLGQMLAPFFTALVLAFLLEGVVAWFERR-GLPRL 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  +  +   +   L +      +  ELV +       G      L      +   
Sbjct: 70  ASVLLVFLFFIGALLALALIIMPLVWNQTVELVQEAPRMFASGQAWLDGLQSRYPTLITP 129

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++              T         +       L   + ++ + I +FF  +D
Sbjct: 130 AQIEDWIATAGRE--------ATQLGQRALTLSLASLGNLLGLLIYLVLVPILVFFLLKD 181

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++Q L SL          +I   +   I +   G  I  +  G+   + +W  G+P 
Sbjct: 182 RERLTQFLLSLLPRK-RVLMTRIWHEMDDQIANYIRGKAIEILIVGVAAFATFWAFGLPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L +I  +  ++P       T     +     G       + +  A+   +    L P
Sbjct: 241 TALLALIVGLSVLVPYIGAAVATLPVAAVAGFHFGISEQFAYVLIAYAVLQALDGNVLVP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L    + L  +     ++      G  G+F    L  L+  + +     +++
Sbjct: 301 ILFSEAVNLHPVSIILAVLFFGGIWGFWGVFFAIPLATLLKALVQAWPRGVRD 353


>gi|237808109|ref|YP_002892549.1| hypothetical protein Tola_1348 [Tolumonas auensis DSM 9187]
 gi|237500370|gb|ACQ92963.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 365

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 164/353 (46%), Gaps = 5/353 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + I+  ++  ++++    ++ F  PV  A+II + SWP+Y       +   T  A++ 
Sbjct: 10  IRRIIVGLLLGGLVMLGYTVVQPFIIPVAWAMIIAYASWPLYCLLRQSIKLRPTLSALLM 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTK 125
           T+ V   FI+P L++      E+    +        G P +P ++  +P      +    
Sbjct: 70  TLLVTTAFILPTLWVISLLRDEVGIAYTHFNSRIAEGPPKLPEYIRTLPWLGSWLDGLIT 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +      +     G + +       G           F +I LFF +RDG  I 
Sbjct: 130 QSIGDPAAFQDKISTWLQEGSNQLVSVLGDVGRNAAKV----GFALITLFFMFRDGEHIL 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+  +      A        V ++  +   G+ + A+ +G V G  YW   + + + LG
Sbjct: 186 TQVHKVLFRFLGARIDNYLAAVGEMTIAVVWGLILTALAQGFVAGLGYWWLDLSAPMLLG 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            ITA+++MIP GAP ++ +++++LLI G   N   L LWGA+ +  VD  +RP ++    
Sbjct: 246 AITALVSMIPFGAPFAWGSITVFLLIDGQYLNGIILLLWGALAVSSVDNLVRPMVISSAT 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++PFL   FG++GG+   GL+GLF+GPV++A++  IW+E +          SS
Sbjct: 306 QIPFLLVMFGVLGGLAAFGLVGLFMGPVILAVLMAIWQEWLEESDLESATDSS 358


>gi|295395792|ref|ZP_06805980.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971327|gb|EFG47214.1| integral membrane protein [Brevibacterium mcbrellneri ATCC 49030]
          Length = 465

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 103/335 (30%), Gaps = 10/335 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + +    L  +     P L AL++     P  S      +   T   +   +
Sbjct: 78  RSLIVIAAVAVAFWGLSKVSILVLPCLIALLLAALMAPAVSFLDRH-KWPHTLSVITTFL 136

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  L F     ++    L  +VVL         +             + +  ++
Sbjct: 137 GFILVVLGLLAFTGQQIVVGFPALAHQVVLGVNKLNAFVQ--------NNPFGIDSTVIT 188

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A        ++   ++  + A FFF  DG  I Q  
Sbjct: 189 SYLDELSGKALDWLQKSQGKIASGALGAASSIGNFVTGLLITLFASFFFLYDGGRIFQWF 248

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L            +      +        ++A  + + +G   +  G+P    L V+ 
Sbjct: 249 VRLLPKPAQPKSVAAAVNGWSTLVQYVRVQVLVAGIDAVGIGIGAFALGIPLAFPLTVLV 308

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP     ++     +  L+   +  A  + +       +    L+PFL+G  + +
Sbjct: 309 FLASFIPLVGAVLTGVIAVLVALVSKGLVTAIIMLIVVVGVQQLEGNVLQPFLMGKAVAV 368

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L     + GG    G+ G       +A++  + 
Sbjct: 369 HPLAVVLAVTGGGVLYGIPGALFAVPFVAMLNTVV 403


>gi|94498879|ref|ZP_01305417.1| hypothetical protein RED65_08834 [Oceanobacter sp. RED65]
 gi|94428511|gb|EAT13483.1| hypothetical protein RED65_08834 [Oceanobacter sp. RED65]
          Length = 356

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 122/345 (35%), Gaps = 7/345 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + + +I      L+    P +   +  +   P+     +    S T    I  + +
Sbjct: 12  LVILISIALIGWLFANLEPVLMPFIVGALFAYLGDPVADRLEN-IGLSRTSAVCICFLVI 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  + LL +    + ++K L   +               +   G+   +   +++   
Sbjct: 71  LAVIAIFLLLVVPTIVHQVKVLYGFLPDILNWLQKNVMPWLNSNMGIKVEDFNFQNIREE 130

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     +  + +  I      F    + +  ++  + +  F+  RD   I ++   
Sbjct: 131 IVQNWGGLQKVMKDVLAGIGNSTGSF----VAFLANLAIVPVVGFYLLRDWDVIMEKALK 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L    +     +++     V+ + F G   +     ++ G   WL G+     +G+   +
Sbjct: 187 LLPGRYQQATHELAAECDDVVGAFFKGQLWVMTALAIIYGFGLWLVGLKLAFLIGLFAGL 246

Query: 251 MAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +++P          ++       G  +    + +   +   I    L P LVG  I L 
Sbjct: 247 ASIVPYLGAALGIVAAMVAGAFQFGMGWELLLIGVVFGVGQAIESMILTPILVGDKIGLH 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +   F ++ G +  G +G+ +   + A+IAV+ + +    K+++
Sbjct: 307 PVAVIFAIMAGGQLFGFIGVLVALPVAAVIAVLLRHAHDFYKDSE 351


>gi|326316808|ref|YP_004234480.1| hypothetical protein Acav_1999 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323373644|gb|ADX45913.1| protein of unknown function UPF0118 [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 350

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 144/346 (41%), Gaps = 4/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+ T+L  +  +  +I  + L  L  L  F   V   +I+     P++   +      + 
Sbjct: 1   MKTTLLQNRTFIALLI-AVSLAFLAILWPFHGAVFWGIILAILFAPMHRRLLRYMPRRAN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+      + + I+P+  +    + E   +  ++             +       WA 
Sbjct: 60  LAALCTLSLCLLVVILPMTLITVSLVQEASLVYERIRSGQLDFTAYFHQVMQAMPS-WAM 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++  +      S      + +      F+   A  FG   L + +S   M+  LFF  RD
Sbjct: 119 QILDRLNLTTASELQARLSSVTVQATQFVGSKAIDFGQNTLQFVVSFGIMLYLLFFLLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +++ ++      L   + ++++     VIR+T  G   +A  +G + G A+W  G+ +
Sbjct: 179 GPALAARIREATP-LDEGHKRQLATKFTTVIRATVKGNIAVAAAQGALGGLAFWFLGIQA 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  GV+ A ++++P     + +  V+IYLL  G ++    L  +G   + +VD  LRP 
Sbjct: 238 PVLWGVLMAFLSLLPAVGAGLIWAPVAIYLLATGAVWQGAGLAAFGIGVIGLVDNVLRPV 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   K+P        +GG+   GL G  IGPV+ AL    W   
Sbjct: 298 LVGKDTKMPDYIVLISTLGGMSLFGLTGFVIGPVIAALFIATWDLF 343


>gi|213968162|ref|ZP_03396307.1| lipoprotein [Pseudomonas syringae pv. tomato T1]
 gi|301383833|ref|ZP_07232251.1| lipoprotein, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302133398|ref|ZP_07259388.1| lipoprotein, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213927142|gb|EEB60692.1| lipoprotein [Pseudomonas syringae pv. tomato T1]
          Length = 349

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 160/352 (45%), Gaps = 5/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++  + +           P+WL+ IP        +
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGF 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         +++   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMTTVKPYLGEVGNWLLARSAQIGGGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + L+    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|330965376|gb|EGH65636.1| lipoprotein [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 349

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 159/352 (45%), Gaps = 5/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++  + +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGV 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         +++   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMTTVKPYLGEVGNWLLARSAQIGGGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + L+    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|104782535|ref|YP_609033.1| hypothetical protein PSEEN3498 [Pseudomonas entomophila L48]
 gi|95111522|emb|CAK16242.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 354

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/352 (21%), Positives = 153/352 (43%), Gaps = 4/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET+L  + +   ++  + +  L+ L  +   +  A+I+G    P+    + +      
Sbjct: 1   MNETVLQNKALT-VLLALVTVAFLWILLPYAGAIFWAVILGILFSPLQRHLLLRFGGRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                A V+ + + ++P++ +    + E   L  ++               D+       
Sbjct: 60  LATATALVTCLLIAVLPVIVISALLVQEGAALYQRIESGQLDIAGYIERGKDMLPAYAQH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    + +   L+     +  T G  F+   A  FG    ++ +S   M+  LFFF R+
Sbjct: 120 FLDRMGMGNLDGLREKISKW-ATEGSQFLAGQAFSFGQGTFEFLVSFGIMLYLLFFFLRE 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++      L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS
Sbjct: 179 GAEVARKVRQAVP-LPEQQKRRLQLKFKRVVRATVKGNLLVAITQGALGGLIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P     I +  V++Y L+ G  +    L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVLMAFLSLLPAVGAGIVWGPVAVYFLLTGATWQGVVLIAFGVLVIGLVDNLLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LVG   ++P        +GG+   GL G  IGP++ AL    W   + +  +
Sbjct: 298 LVGKDTRMPDYLVLVSTLGGLAVFGLNGFVIGPLIAALFVSSWAIFVSSKPQ 349


>gi|26988931|ref|NP_744356.1| hypothetical protein PP_2207 [Pseudomonas putida KT2440]
 gi|24983744|gb|AAN67820.1|AE016413_2 membrane protein, putative [Pseudomonas putida KT2440]
          Length = 354

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 143/339 (42%), Gaps = 3/339 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  ++  + +   + L  ++  +  A+I+G    P+    + +        A  +T
Sbjct: 7   QNKALAVLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRCGRRRNLAAATST 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+P++ +    + E   L  ++               D+        L    +
Sbjct: 67  LVCLLVAILPVIIISALLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQRGLDNMGM 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF RDG  ++++
Sbjct: 127 GNLDGLRDKITKW-ATQGSQVLASQAFSFGQGTFEFLISFGIMMYLLFFFLRDGPEVARR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+
Sbjct: 186 VRMAVP-LPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPSALVWAVL 244

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAVGAGIIWAPVAAYFLLTGAILQGVVLTAFGVLVIGLVDNVLRPILVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P        +GG+   GL G  IGP++ AL    W   
Sbjct: 305 MPDYLILVSTLGGLAVFGLNGFVIGPLIAALFVSSWAIF 343


>gi|307709047|ref|ZP_07645507.1| conserved hypothetical protein [Streptococcus mitis SK564]
 gi|307620383|gb|EFN99499.1| conserved hypothetical protein [Streptococcus mitis SK564]
          Length = 388

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWLEKH-KINRVIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVINDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|153010748|ref|YP_001371962.1| hypothetical protein Oant_3427 [Ochrobactrum anthropi ATCC 49188]
 gi|151562636|gb|ABS16133.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 355

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 136/347 (39%), Gaps = 3/347 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  +++ VL A+I+     P+               A+
Sbjct: 1   MSVQRASFYILLALVTIAFAWLLLPYYSAVLWAVILAVVFSPVQQRLERLLGGRKNIAAL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E  T
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVQEGNSLYQRLSSREFDLNSYISRILGALP-DSLEEWLT 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      +     G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGDFAEWRARISSAIMQGSQLFAGKLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADL 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G + G  +W  GV + +  
Sbjct: 180 GRKIRQAIP-LNDDYTRQFLEKFIAVIRATVKGNIIIAIIQGTIGGVTFWSLGVEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GV+   ++M+P  GA + +   + +    G   +   L   G   + +VD  LRP LVG 
Sbjct: 239 GVLMTFLSMLPAVGAALVWVPAAAWFFASGEWISGGILVFVGVFVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             ++P        VGG+  +G+ G  +GP++ A+    W       K
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVVGPLIAAMFIAAWSLLAEEQK 345


>gi|166711227|ref|ZP_02242434.1| permease [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 388

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 125/345 (36%), Gaps = 8/345 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S     ++  V
Sbjct: 14  RRLKWAAVIVGVLWVISLLAPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNAAVMLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LF++ L+ L      ++  L+  +       I                +L      
Sbjct: 73  LATLLFVLALMILVPMIERQIMTLIEALPQMRNWAIGTA---IPWLEAKTGMQLMAWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S           +  + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGVAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     ++++    V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVVPRAYIGTVSRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +    
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHEQY 354


>gi|4098497|gb|AAD00285.1| putative membrane protein [Streptococcus mutans]
          Length = 395

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 105/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L FL     P++ + ++ +   PI      +   S      I  V +  L +  +   F
Sbjct: 55  LLSFLAVIMLPLVISALLYYLLKPIVDFIEIR-GTSRVMAITIVFVIIAGLLVWGIANFF 113

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++   +  +    +        L                +++     +       
Sbjct: 114 PMLNEQLTSFIKYLPSYVRSVDAQVSKLLRNDLLASFRPQIENAVTNFSQKAVDYAEPFS 173

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              + +   FAS    + +   +S   +     +  RD   + +   S           +
Sbjct: 174 KGAVTWAGNFASLIARVTVAIIISPFIVF----YLLRDSSKMKEAFVSYLPTKMRQPIHR 229

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   V + +       + +AI  G +    + + G+   V  G+I   + MIP       
Sbjct: 230 ILGDVNRQLAGYVQRSSTVAIIVGFMFSIMFTIIGLRYAVTFGIIAGFLNMIPYLGSFLA 289

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T     L +         + L   +E  I  + + P ++G  + +  +   F L+     
Sbjct: 290 TIPVFILALVEGPVKVVKVALVFIVEQTIEGRFVSPLVLGSKLSIHPITIMFILLTAGSM 349

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G+ G+F+G  + A I V+ KE     K
Sbjct: 350 FGVWGVFLGIPVYASIKVVVKEIFEWYK 377


>gi|323481538|gb|ADX80977.1| PerM family permease [Enterococcus faecalis 62]
          Length = 389

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 107/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 50  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 108

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 109 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 168

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F     MIF+        M   LF+  +DG +++  L             K
Sbjct: 169 TFTVQGIGNFFGAVAMIFVAIIT----MPFILFYLLKDGKNLAPYLMKFLPVKMRKPTLK 224

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 225 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 284

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 285 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 344

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 345 FGIVGVILGIPVYAAAKVIITHIFEWYQ 372


>gi|291544868|emb|CBL17977.1| Predicted permease [Ruminococcus sp. 18P13]
          Length = 439

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 116/375 (30%), Gaps = 31/375 (8%)

Query: 10  GIMRWMIMFIILVSLYF---------LKGFFAPVLSALIIGFTSWPIYSSFISKKE---- 56
            ++  + + ++ V   F         L    AP+   ++I + S P+ + F    +    
Sbjct: 17  VLVFAVCLALVAVVFRFSTLMEYVHRLFKVIAPITWGIVIAYLSTPLLTFFEKYLKKWIN 76

Query: 57  -------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR- 108
                          +    ++   +  +  +    +  MK + + +     +       
Sbjct: 77  RKKEHNKLIRVISIFLCMSILILSIVGIVYAVIPEIISSMKNIFTLLPDYLNNLQQYLTN 136

Query: 109 ----------WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
                      L +     ++S          +    L     K   +  +   A  F +
Sbjct: 137 RFNSFIQDNPELGEKLTNSFSSMQDMLLGLADEYSPKLDSLLDKDGVVANVTSSAYAFLI 196

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
              D+CL +   +  L+        I + + +L       +  +I+          F G 
Sbjct: 197 TLKDFCLGLFVSVYLLYSKELFLAQIKKVVHALFSKRHCEFIFRIASRTNYTFMHFFSGK 256

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            + ++  G++      +  +P  + + ++  +  M+P   PI     S  L++       
Sbjct: 257 AVDSLIIGMLCFIILTIMKMPYVLLISILVGVTNMLPFFGPIIGAVPSGLLILLSEPDRT 316

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               ++  +        L P ++G  + L      F +  G      LG+     L A++
Sbjct: 317 LAFVIFIILLQQFDGNILGPKILGNSLGLSPFWIMFAIFLGGGMFNFLGMVAFVPLFAVL 376

Query: 339 AVIWKESIMAIKENK 353
              +++S+      K
Sbjct: 377 YAFFRDSVNQRLSKK 391


>gi|256853913|ref|ZP_05559278.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256710856|gb|EEU25899.1| conserved hypothetical protein [Enterococcus faecalis T8]
          Length = 389

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 5/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F      PV+ A I+ +   PI      K + S  +  +   + ++ L I   + + 
Sbjct: 50  VWQFFGVVGLPVIMAGILYYLLNPIVDYLEKK-QISRVWSIIGLFILIVALLIWGGIVIV 108

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V+             + +   P      E          S        + 
Sbjct: 109 PKIREQSVSFVNHFPQYIDTIDQKSQEILSDPLFAQFREQLEAAGDKVVSSLGTIIKNVS 168

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  +  I  F      IF+        M   LF+  +DG +++  L             K
Sbjct: 169 TFTVQGIGNFFGAVATIFVAIIT----MPFILFYLLKDGKNLAPYLIKFLPVKMRKPTLK 224

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   + S   G   +A    ++    + + G+   V LG+    + +IP       
Sbjct: 225 VLAEVNDQVSSYIRGQLTVAFAVAIMFMIGFSVIGLDYAVTLGIAAGFLNLIPYLGSFLA 284

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I         + +  AIE  +  + + P ++G  + +  +     L+   + 
Sbjct: 285 MIPAVFLGIVSGPALLIKVLIVFAIEQTVEGRFISPLVLGSQLSIHPVTILVVLLTSGKL 344

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G++G+ +G  + A   VI        +
Sbjct: 345 FGIVGVILGIPVYAAAKVIITHIFEWYQ 372


>gi|307301008|ref|ZP_07580777.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307317742|ref|ZP_07597180.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306896504|gb|EFN27252.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306903963|gb|EFN34549.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 379

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 115/351 (32%), Gaps = 9/351 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++   +  L        P L+ + + +   P+      +   S     + 
Sbjct: 18  LQRQIFFWLLVLVGFIAFLLVFSSILLPFLAGMALAYFLDPVADRLE-RLGLSRLMATIA 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + +  + L+ +    + +  E + K+                     W +   T 
Sbjct: 77  ILVAFVVVLALSLMIIVPLVVTQAAEFIQKMPGYITRLQEFLTDSQSTLLPDWLAGQMTT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   L          + +  + +     G+  L+     +   +  F+   D   + 
Sbjct: 137 IKQNSAKLLEQ-----GASFLGTLFQQIWNSGLALLNILSLFVITPVVAFYLLLDWDRMV 191

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++DS     +    ++I+R +   I     G   + +  GL  G    + G+   + +G
Sbjct: 192 DRVDSWIPRDYVEVVRQIARDMNTTIAGFVRGQGSLCLILGLYYGIGLTMVGLNFGLLIG 251

Query: 246 VITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++ +       +      +        F+    L+P LVG
Sbjct: 252 LFAGMISFIPYVGSLVGLVLALGVALVQFWPDYVWILLVLAVFFSGQFLEGNILQPKLVG 311

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L+      G +GL +     A I V+ +  I    ++ 
Sbjct: 312 KSVGLHPVWLMFALLAFGALFGFVGLLVAVPAAAAIGVLVRFGIQRYLDSD 362


>gi|81428086|ref|YP_395085.1| putative transport protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78609727|emb|CAI54773.1| Putative transport protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 379

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 109/320 (34%), Gaps = 4/320 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A ++ +   P+      +   +      +  + ++ L    +  +      +   
Sbjct: 58  LPIIIAAVLYYLINPLIDWLEHRWHLNRVLSITLIFIVIVALLAWGVATIIPIIQSQTTS 117

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L+ +      +         + P      +      +   S        + T+ +  I  
Sbjct: 118 LIKQWPSYWANIQKQTMSWFNDPSFKSLQKQLDDINTDMLSNLSGKVNKMLTSTVTHIGT 177

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                     +  ++I+ M   LFF  +DG  +   L             ++   +   +
Sbjct: 178 AVGVVT----NIVIAIVTMPFILFFMLKDGHRLKGYLVKFFPVRIRETTSQVLEEINGQV 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                G   +A    ++    YW+ G+   + LG++  ++ +IP          S+ +  
Sbjct: 234 SQYIRGQLTVAFWVAVMFTIGYWIVGMKYGLTLGILAGLLNLIPYLGSFLALVPSVVIAA 293

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +      + L  A+E  +  + + P ++G  + +  + T   L+   +  GL+G+ +G
Sbjct: 294 FISPILLIKVLLVFAVEQTLEGRVVSPLVLGSKMSMYPVTTIIVLLASGKLFGLVGVIVG 353

Query: 332 PVLMALIAVIWKESIMAIKE 351
             + A+I ++        K+
Sbjct: 354 IPVYAIIKILVTHLFEWFKK 373


>gi|257877173|ref|ZP_05656826.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811339|gb|EEV40159.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 393

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 98/327 (29%), Gaps = 5/327 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              FL     P++ A I+ +   P       K      +      + V+ L +  ++ + 
Sbjct: 48  VWQFLAIVGLPIILAGILYYLMNPTVDYLERK-GIKRIYSIFGLFILVVGLIVWGVVVII 106

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +       +             +   P      E          S        L 
Sbjct: 107 PKIQEQSMSFADNLPSYLTIIENKVNEILSDPIFSQVQEQIEASNEKLISSLTDIVQNLS 166

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + I  +  F      I L        M   LF+  +DG  ++                 
Sbjct: 167 RSTIQNLGSFFGAVATIVLAVIT----MPFILFYLLKDGRKLAPYFVKFLPTKMRQPSLV 222

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   + S   G   +A    ++    + + G+   + LG+    + +IP       
Sbjct: 223 VLKEMNDQVSSYIRGQLTVAFAVAVMFMIGFSIIGLDYAITLGIAAGFLNLIPYLGSFLA 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I G       + +   IE  I  + + P ++G  + +  +     L+   + 
Sbjct: 283 MIPAVFLGIVGGPVLLIQVLIVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKL 342

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            GL+G+ +G  + A   V+        
Sbjct: 343 FGLVGVILGIPVYAAAKVVITHVFEWY 369


>gi|28869423|ref|NP_792042.1| lipoprotein [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28852664|gb|AAO55737.1| lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331016291|gb|EGH96347.1| lipoprotein, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 349

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/352 (20%), Positives = 159/352 (45%), Gaps = 5/352 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++  + +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATALIKDIQVDGLPDPPQWLAGIPLVGERLVGL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         +++   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMTTVKPYLGEVGNWLLARSAQIGGGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + L+    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|16080231|ref|NP_391058.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311123|ref|ZP_03592970.1| hypothetical protein Bsubs1_17271 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315450|ref|ZP_03597255.1| hypothetical protein BsubsN3_17187 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320366|ref|ZP_03601660.1| hypothetical protein BsubsJ_17155 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324650|ref|ZP_03605944.1| hypothetical protein BsubsS_17306 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8928521|sp|O32095|YUEF_BACSU RecName: Full=UPF0118 membrane protein yueF
 gi|2635675|emb|CAB15168.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 369

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 118/351 (33%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKE 56
                Q +   +I+F+     +  + F         P+L A I+ F   P+      K  
Sbjct: 7   HFWTLQILFVLLIIFVATKVSFVFQPFIVFISTLFFPMLIAGILYFIFNPVVRLLEKK-- 64

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              T   ++  +  + L       +      ++  L + +    +    + + LS     
Sbjct: 65  IPRTLSILLIYLLFIGLLAFISASVGPIITAQVTGLFNNLPDYIKQIQALTKDLSHSQWF 124

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            W             S    S T    N    I    S    +  +  L II +   LF+
Sbjct: 125 TW----MMNQDYVSISKIEQSLTSFLQNLPQNITSSLSAVFGVVTNITLVIITVPFILFY 180

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG         +    +     KI + +   + + F G  +I +  G      Y +A
Sbjct: 181 MLKDGHRFPHLAVKILPASYRTEGLKIFKDLSDTLAAYFQGQLLICLFVGTACFIGYLIA 240

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+P  + LG++ AI  +IP   P    A ++ +    +   A    +   I   +    L
Sbjct: 241 GLPYALILGIVMAITNIIPYVGPFLGAAPAVIVGFMDSPAKALFAIIVVVIVQQLDGNLL 300

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            P ++G  +    L     L+G     G+LG+ +   + A++   +   + 
Sbjct: 301 SPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVVKAFFLNIVR 351


>gi|257870978|ref|ZP_05650631.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257805142|gb|EEV33964.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 387

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 99/327 (30%), Gaps = 5/327 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              FL     P++ A I+ +   P       K      +      + V+ L +  ++ + 
Sbjct: 48  IWQFLAIVGLPIILAGILYYLMNPAVDYLERK-GIKRIYSIFGLFILVIGLIVWGVVVIV 106

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +    V  +             +   P      +          +        L 
Sbjct: 107 PKIQEQSMSFVENLPGYLDIIENKVNEILSDPIFSQVQDQLEASNEKLIASMTDIIQNLS 166

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + I  I  F      + L        M   LF+  +DG  ++                 
Sbjct: 167 RSTIQNIGSFFGAVATVVLAVIT----MPFILFYLLKDGRQLAPYFVKFLPTKMRKPSLT 222

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   + S   G   +A    ++    + L G+   + LG+    + +IP       
Sbjct: 223 VLKEMNDQVSSYIRGQLTVAFAVAIMFMVGFSLIGLDYAITLGIAAGFLNLIPYLGSFLA 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I G       + +   IE  I  + + P ++G  + +  +     L+   + 
Sbjct: 283 MVPAVFLGIVGGPVLLVKVLVVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKL 342

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            GL+G+ +G  + A   VI        
Sbjct: 343 FGLVGVILGIPVYAAAKVIITHIFEWY 369


>gi|126651797|ref|ZP_01723999.1| hypothetical protein BB14905_15335 [Bacillus sp. B14905]
 gi|126591475|gb|EAZ85582.1| hypothetical protein BB14905_15335 [Bacillus sp. B14905]
          Length = 399

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 124/341 (36%), Gaps = 5/341 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI        +    P + A+I  +   P+ +  +  +     +  +I  ++V+ +  
Sbjct: 46  VSFIFTPLQVLFEVVILPGVLAVIGYYLLRPLLAILVRWR-IPRIWGILILYIAVIGVIT 104

Query: 76  VPLLFLFYYGMLEMKELVSKVVLAN----QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           + ++ ++ +   +   LV +         +  +               +  + + + +  
Sbjct: 105 LLVVLVYPFLRDQFTNLVQEFPEYFMKFTEKFVAFFNHSRFNDYLDKINFDYNEVVKNFT 164

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  + +      N    +    + F        LS++ +   LF+  ++G  + + +  +
Sbjct: 165 TDMVKTVKDTAANIAQGVASGITGFLSTLTGIVLSLVTVPFILFYLLKEGEKLPKFMLKV 224

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I   + K I S   G  ++++  G ++   + + G+   + LG +  I 
Sbjct: 225 CPPRMRKEVTEIFHDMDKQISSYIQGQILVSMCIGAMVTIGFLIIGMKYALLLGFLAMIT 284

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +++P   P+     ++ + +  +      L +   I   I  K + P ++G  + +  + 
Sbjct: 285 SVVPYLGPVIAITPAVIIALVTSPLMLIKLAIVWTIVQLIEGKFISPQIMGKSLSIHPIT 344

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             F L+      G+ G+ +G    A+  V+        K+ 
Sbjct: 345 IIFVLLTAGSLFGVPGVILGIPGYAIFKVLVTHLFKLFKQR 385


>gi|330980752|gb|EGH78855.1| hypothetical protein PSYAP_19606 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 348

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 157/350 (44%), Gaps = 5/350 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVAL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         ++I   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMATLKPHLGQVGNWILARSAQIGSGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +   
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARP 347


>gi|307727746|ref|YP_003910959.1| hypothetical protein BC1003_5755 [Burkholderia sp. CCGE1003]
 gi|307588271|gb|ADN61668.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 369

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 174/347 (50%), Gaps = 5/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 26  ERVKKQKAASLALYIGLVLLALWVVRDFLPVVGWAGVLAIALWPLLRKVEGSRWLSGRTT 85

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A   T+++  L ++P+       + E  +L      A ++GI +P ++  +P G+  +
Sbjct: 86  LIAAALTLAIALLVVLPVGVGIAQALREAHDLSEWFKAAQENGIAMPDFIHRLPFGVQQA 145

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E W +    P      +   L +     +      FG   +       FM++ LF  ++ 
Sbjct: 146 EAWWQAYLAPPLRDSAAMKGLHS---TTVVTLGRHFGARAVHAVTVFAFMLVTLFVIFQA 202

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S  L    +  F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P 
Sbjct: 203 GPRLSGALARGLQRGFGEDGAQLVQRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPH 262

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L +IT+I AM+P  API+F+  +++L  +G++  A  L ++G+I +F+ +  +RP L
Sbjct: 263 VALLALITSIAAMLPFCAPITFSLAALWLFSQGSVAGAIGLLVFGSIVVFVAEHFVRPVL 322

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W + + 
Sbjct: 323 IGNSTRLPFLLVLFGILGGAETFGLLGLFIGPALMTVLMVLWTDLVQ 369


>gi|307701966|ref|ZP_07638974.1| transport protein [Streptococcus mitis NCTC 12261]
 gi|307616611|gb|EFN95800.1| transport protein [Streptococcus mitis NCTC 12261]
          Length = 388

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KVNRVIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|186474126|ref|YP_001861468.1| hypothetical protein Bphy_5344 [Burkholderia phymatum STM815]
 gi|184196458|gb|ACC74422.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 647

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/349 (11%), Positives = 97/349 (27%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +   +++  LYF +    P+  A+++ F   P+      +          +A ++
Sbjct: 40  GLTSVITFVVVVCGLYFAREVLIPITLAVLLSFLLAPLVGLL-RRLHFGQLPSIFVAVLT 98

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA---------- 119
            +   +     +          L        +    V          + +          
Sbjct: 99  AVVALLAVSTLIGAQVAQLAGSLPQYQAAIERKVETVQEKTVGRADALLSRAATALARVA 158

Query: 120 ---SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                   +     +              I    + A R     +    ++  +++   F
Sbjct: 159 PERPAPAHEAGRSQKPTVAAPLPVEVHEPIPSPLQLAQRVFSPVVGPLETMFIVLVVTIF 218

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L  L                   +   F+    + +G G  +     + 
Sbjct: 219 ILLQREDLRDRLIRLFGARDLHRTTTAINDAASRLSRYFVAQLGVNLGAGATIAIGLAII 278

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GV+TA++  +P         +++ L   I+     A    +       +  +
Sbjct: 279 GVPGALLFGVLTALLRFVPYIGTWIAGLLAVILAAAIQPQWTMAVWTIVLFVSIDVVAGQ 338

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 339 VVEPLLYGHSSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCLVTLGR 387


>gi|322385122|ref|ZP_08058769.1| membrane protein [Streptococcus cristatus ATCC 51100]
 gi|321270746|gb|EFX53659.1| membrane protein [Streptococcus cristatus ATCC 51100]
          Length = 410

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 108/336 (32%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + F+     PV+ A ++ +   PI      + + +      I  V +  L +
Sbjct: 63  ISFIFTPVIEFIGVIMLPVILAGLLYYLLNPIVDWMEKR-KINRVAGITIVFVLIGVLIV 121

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    +   +              +      +   
Sbjct: 122 WGLAVAIPNLQHQVVSFSKNVPAYLKQANKMIDDVLTNHISDDLKPQIEQV----TNKLS 177

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +N       +AS          ++II M   LF+  RDG ++   +       
Sbjct: 178 TQITSWASNFSSKAVNWASNLISTASQIIVAIIIMPFILFYLLRDGKNLKGYVVQFLPTK 237

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + ++   V   + +   G   +AI    +    + + G+   V L V+  ++ ++P
Sbjct: 238 FRESFGQVMTDVNTQLANYVRGQVTVAIIVAFMFMILFKIIGLRYGVTLAVVAGVLNLVP 297

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 298 YLGSFLAMLPALVLGLIAGPIMLLKVIIVFIVEQTIEGRFVSPLILGSQLSIHPITILFV 357

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G    A   V         K+
Sbjct: 358 LLTSGTMFGIWGVLLGIPAYASAKVAITALFKWYKK 393


>gi|228953248|ref|ZP_04115302.1| hypothetical protein bthur0006_26330 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228959134|ref|ZP_04120833.1| hypothetical protein bthur0005_26260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229110365|ref|ZP_04239937.1| hypothetical protein bcere0018_26180 [Bacillus cereus Rock1-15]
 gi|228673105|gb|EEL28377.1| hypothetical protein bcere0018_26180 [Bacillus cereus Rock1-15]
 gi|228800523|gb|EEM47441.1| hypothetical protein bthur0005_26260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228806475|gb|EEM53040.1| hypothetical protein bthur0006_26330 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 373

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 37  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 96  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 151

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 152 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 211

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 212 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 271

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 272 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 332 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 369


>gi|229815208|ref|ZP_04445544.1| hypothetical protein COLINT_02254 [Collinsella intestinalis DSM
           13280]
 gi|229809218|gb|EEP44984.1| hypothetical protein COLINT_02254 [Collinsella intestinalis DSM
           13280]
          Length = 455

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/327 (11%), Positives = 110/327 (33%), Gaps = 2/327 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L      +    I  F + PI +    +        A+I  + V+  F++    +     
Sbjct: 39  LSNVLIFLSVGAISAFMASPIVNFLERR-GLPRAGGALIGLLVVIVGFVLLFALVIPMVT 97

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L+                + +    +          S   S + +    L +  +
Sbjct: 98  GQLIDLLRDAPAKLAALSSWAMRMENKFAIVEHLNDVVNIESLFASAQDMINQAL-SGLL 156

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +                ++    +  F+   D   I++++  +        ++ +  +
Sbjct: 157 SAVRDGIVPMVNNIASMVFTVFLGFVLAFWLACDYPRINEEICRILPEDKADDYRLMVAV 216

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + + +        I ++ +G +    + + G P  + +G+++ I+ +IP   P     ++
Sbjct: 217 LSRSVGGYLRSTLINSMIQGFLAFVGFMIVGHPYAITMGILSGILNIIPVVGPSISAIIA 276

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +  +   A    +   +   I D  + P +    +++  + +   LV G    G +
Sbjct: 277 TLIALVYSPIMAIWTMVMAMLSQNITDNVIAPKINQSTMQVHPVLSLTALVVGSTFGGAI 336

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENK 353
           G+ +   L+A+I  ++          +
Sbjct: 337 GMIVALPLVAVIKSLFIFYFETRTGEQ 363


>gi|121998980|ref|YP_001003767.1| hypothetical protein Hhal_2201 [Halorhodospira halophila SL1]
 gi|121590385|gb|ABM62965.1| protein of unknown function UPF0118 [Halorhodospira halophila SL1]
          Length = 365

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 122/357 (34%), Gaps = 11/357 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R T  +PQ     ++M + L +L  L    APV++A++I +    +   F  +      
Sbjct: 8   LRRTFNDPQIAAFIVLMVVGLGALLMLGSILAPVIAAVVIAYLLEGVVRGFE-RAGVPRM 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              VI  + +    ++ L  L      ++ +LV ++      G  +   L +    +++ 
Sbjct: 67  LAVVIVILFLTTFLVLVLFALIPLLYRQVGQLVDQLPAILAQGQMLLLQLPEHYPQLFSE 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + L         +   +   G   +     +  MI     +  + +   +FF  +D
Sbjct: 127 AQIREMLD-------TARREITDLGQRVVASVTVQSLMILGTLVIYAVLVPFLVFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + Q + +       A+  ++   V + I +   G  I  +    V    + L GVP 
Sbjct: 180 KRLLLQWVSNHMP-RHRAFASEVWLDVDQQIGNYVRGKFIEILIVWAVTYITFSLLGVPF 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V T +  +IP       T     +     G       + +   I   +    L P
Sbjct: 239 AMLLAVATGLSVIIPYVGAFVMTVPVALIAYFHFGVSQELVYVLVAYTIIQVLDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + L  +     ++      G  G+F    L   I  I K  +   K   ++
Sbjct: 299 LLFSEVVNLHPVAIIVSILVFGGIWGFWGIFFAIPLATFIQAIIKAWVRRRKPPDDE 355


>gi|89097465|ref|ZP_01170354.1| hypothetical protein B14911_27740 [Bacillus sp. NRRL B-14911]
 gi|89087761|gb|EAR66873.1| hypothetical protein B14911_27740 [Bacillus sp. NRRL B-14911]
          Length = 372

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 121/343 (35%), Gaps = 5/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P++ +  + F   P+ +   ++ +   T   +I  + ++ L +
Sbjct: 29  ISFLFEPIGIFVSTLFFPIIISGFLYFLLNPVVNFLQAR-KLPRTLAIIIIYLIIIGLIV 87

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      ++  L + +    Q        LS      W           P     
Sbjct: 88  LVIGSLVPIISKQVTALFNDLPTYAQRTRIYLENLSSSQQFKWVMNQ----DYVPIENLE 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S         D +    S    +  +  ++I+ +   LF+ ++DG      +       
Sbjct: 144 RSLMEFANTIPDRVTNGISNVFSLVANITVTIVTVPFLLFYMFKDGGRFPAAISKFLPLS 203

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + +   K  +   + + +   G   +A+  G +    Y +  +P  + L +I A+  +IP
Sbjct: 204 YRSEGLKTLKETGETLAAYIQGQVTVALFVGTLAFIGYMIIDLPYALVLALIVAVTNIIP 263

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A    +  A+   +    L P ++G  +          
Sbjct: 264 YVGPFLGGAPAVLIALFDSPAKAILAIIVIAVAQQVEGNILSPLILGKRLDTHPATIIIL 323

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+      G+LG+ +     A++  I    +  ++  +E + S
Sbjct: 324 LLVAGNLAGILGMILAIPTYAVVKTIVMNFVRFLRAKRESVVS 366


>gi|89072498|ref|ZP_01159070.1| putative permease [Photobacterium sp. SKA34]
 gi|89051602|gb|EAR57055.1| putative permease [Photobacterium sp. SKA34]
          Length = 361

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/352 (19%), Positives = 142/352 (40%), Gaps = 2/352 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   +      S   ++ +  P++ A II     P++   ++     +   A+++ 
Sbjct: 10  RHWLLIIALFVAAFASYKLIEPYLGPIVLAFIISLLFAPLHKRLLALMPTRANTAAMLSC 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPGGMWASELWTKH 126
             +  + ++PLL +F   + +   +  +       G P   +        ++  + ++  
Sbjct: 70  FVLTVIIVIPLLVVFSSIVHQGTTVSKESYQWITSGGPKELFAHPYAQKALFYIDKYSPF 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 + I       +         ++R         ++ + M+  LFF  RD   +  
Sbjct: 130 HDFDPQVIIQKIATTASQVGSQAINISARILGDATSILVNFMMMLFVLFFLLRDNDKMIA 189

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L  +    I   V +V +S  LG  + A+ +GL  G A WL G P      +
Sbjct: 190 AIRHVIP-LSRSQEDAIMEEVEQVAKSAVLGSFLTAVAQGLAGGFAMWLCGFPGLFWGSM 248

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +     +   G  + +   S+YLL+ G    A  L  WG I +  +D  +RP L+ G   
Sbjct: 249 MAFASLIPVVGTALIWLPASLYLLLVGQWEWALFLAGWGIIVVGSIDNVVRPLLMQGSSS 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +  L  FF ++GG++  GL+G+  GP++  +  V++K   +  K+  E+  S
Sbjct: 309 MNTLLIFFSIIGGIQLFGLIGMIYGPIIFGVTLVLFKMYEVEFKDFLEQQDS 360


>gi|289209151|ref|YP_003461217.1| hypothetical protein TK90_1990 [Thioalkalivibrio sp. K90mix]
 gi|288944782|gb|ADC72481.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. K90mix]
          Length = 372

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 115/359 (32%), Gaps = 12/359 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ ++   ++    + + F     AP+L++LII +         I +       
Sbjct: 10  RRHFTDPQVVILAFLLLAGFLIIVFAGRILAPLLASLIIAYLLEGAVQKLI-RLHVPRLL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + L +  L  +      ++ +LV ++    + G  +   L +    +   E
Sbjct: 69  AVTIVLLVFLALTVAALFSVVPLMSAQVTQLVRELPGMIREGQALLLQLPERYPQLITDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   Q+          T     +  F+       +D  + +I + + +FF  +D 
Sbjct: 129 QVRELMGAIQAE--------ATMLGQRVVSFSLAGARHLVDVVIYLIVVPLMVFFMLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   + S           ++ R V   I S   G  I  +    V    +   G+   
Sbjct: 181 DLILDWVRSFMP-RDSHLASEVWREVNVKIASYVRGKFIEILIVWAVSFLTFNWFGLEYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L  +  I  +IP       T     +     G       L +   +  F+    L P 
Sbjct: 240 VLLSFMVGISVIIPYIGAAVVTIPVAAVAYFQFGLSSEFAWLLIAYGVIQFLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    + L  +     +       GL G+F    L  L+  + K      K    + + 
Sbjct: 300 LFSEVVNLHPVAIIAAVFVFGGIWGLWGVFFAIPLATLVHAVIKSWPRTDKLEARREAE 358


>gi|302058489|ref|ZP_07250030.1| lipoprotein, putative [Pseudomonas syringae pv. tomato K40]
          Length = 349

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 69/351 (19%), Positives = 150/351 (42%), Gaps = 3/351 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  M L   PL++L +     +++  + +      G+P P        G+       
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATALIKDIQVDGLPDP---PQWLAGIQLVGERL 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                    +  +        +  +  +            L +   I+  FFFYRDG  +
Sbjct: 119 VGFWTTIDQQGAAFMTTVKPYLGEVGNWLLARSAQIGGGILELTLSIVFAFFFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  + SL E L     +    +V   ++    G+   A  + L+    + +AG+P  + L
Sbjct: 179 AAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQALLALIGFLIAGIPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFVISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +    +
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARNPR 349


>gi|259416188|ref|ZP_05740108.1| membrane protein [Silicibacter sp. TrichCH4B]
 gi|259347627|gb|EEW59404.1| membrane protein [Silicibacter sp. TrichCH4B]
          Length = 380

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 123/367 (33%), Gaps = 29/367 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +   + +  W +  +I   + + L     P +    I +   P+      +   S     
Sbjct: 3   LPARKQLKYWGLAAVIFAVIMWALGNVLMPFILGGAIAYIIDPLADRLE-RAGLSREGAT 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + TV  + +F++ LL +    + +M +LV  +  A  +     +               
Sbjct: 62  AVITVGAVLIFLIMLLLIVPALINQMIDLVQTLPQAMSNLRSFAQEHF----------PS 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +      +     +  +    + +      M  L+  + ++ + +   +   D   
Sbjct: 112 LFEDNSQVREALAGLWKIVQDKSVTLLQTFVGSAMSLLNIVVLLVIVPVVAVYLLVDWDR 171

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++D L         + ++R + +V+ S   GM ++ +  G     A  L G+   +A
Sbjct: 172 MVARIDDLLPRDHAPVVRHLAREIDRVLSSFIRGMGMVCVILGSYYAVALMLVGLNFGLA 231

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKG-----------------NIFNATCLFLWGA 286
           +G +  ++  IP    I    ++I L +                   +      +     
Sbjct: 232 VGFVAGLVTFIPYLGAIIGGVLAIGLALFQFWGAVEGADGEMIRQGTDWLRIALVAGIFV 291

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           I   +    L P LVG  + L  +     L       G +G+ I   + A+I V+ + ++
Sbjct: 292 IGQMVEGNFLTPKLVGNSVGLHPVWLLLALSVFGALFGFVGMLIAVPVAAVIGVVARFAV 351

Query: 347 MAIKENK 353
                ++
Sbjct: 352 DQYLHSR 358


>gi|170746926|ref|YP_001753186.1| hypothetical protein Mrad2831_0492 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170653448|gb|ACB22503.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 374

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 119/350 (34%), Gaps = 10/350 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +  + + +Y L+    P ++ + + +   P+      +        +++   
Sbjct: 4   RAVIGLAAVVALGLIVYLLREVMLPFVAGITLAYLLDPLADRLE-RLGLGRLAASLLILA 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +V LL L      ++  LV+ +         +         G     +   ++ 
Sbjct: 63  LFVVALVVTLLILIPLTANQVVALVNALPGMVSRLQAIIAE----RSGTLLERVGGANVL 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +        +    +         +     ++   +  F+   D   +   +
Sbjct: 119 NELQSSVGTLATQAGTWLLAFLKSLWSGSQALISIASLLVVTPVVAFYILVDWDRMVAAI 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D        A  ++++R +   +     G T++ +  G       WL G+   V +G+I 
Sbjct: 179 DGWVPPRHRATVRELARQIDGAVTGYVRGQTLVCLILGSFYAIGLWLVGLNFGVLIGLIA 238

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-----FLWGAIELFIVDKTLRPFLVGG 303
             +  IP    ++   +S+ + +     +A  L          +  F+    + P LVG 
Sbjct: 239 GFLTFIPYVGTLTGFLLSVGVALVQFWPSADWLHLGLTVGVFLVGQFLEGNVISPKLVGD 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              L  +   F L+      G +GL +   + A I V+ + ++    E++
Sbjct: 299 STGLHPVWLMFALLAFGTLFGFVGLLLAVPIAASIGVLVRFALARYLESR 348


>gi|88800192|ref|ZP_01115760.1| hypothetical protein MED297_13882 [Reinekea sp. MED297]
 gi|88777038|gb|EAR08245.1| hypothetical protein MED297_13882 [Reinekea sp. MED297]
          Length = 368

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 120/358 (33%), Gaps = 7/358 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               + + ++ +++  I  + +Y   G   P+L+A+I+ +   P+     S +       
Sbjct: 15  RYFSDEEAVIVFLLFLICFILIYMFGGILTPLLAAVILSYLLSPLVDKLQSYRVPH-GLS 73

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  +    + +V LL +    + ++  LVS V    +        L +    + + EL
Sbjct: 74  VIIVFLVFFGVLLVSLLTMVPALIKQISALVSDVPGMMRTFQSQLELLPEKYPDLLSQEL 133

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    SL +       +  +  +  F+       +   + +I + + +FF  +D  
Sbjct: 134 ---VGHWSGSLDLSQIGQQLSAWLPNVVSFSLNTLPAIISVLIYVIVVPLMVFFILKDRD 190

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +     S+          +I+  + + I +   G  I  I  G V    + L G+    
Sbjct: 191 ELWSGFKSMLP-DQRRLMNEIAIEMNQQIANYIRGKAIEIIIVGGVTFITFTLLGLNYAA 249

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+     +IP       T       +   G       + +   +   +    L P L
Sbjct: 250 LLSVLVGFSVLIPYIGATVVTIPVFAIGVFQWGFAPELYWVLIAYLVIQVLDGNVLVPLL 309

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               + L  +     ++      G  G+F    L  L+  I      ++  +  + + 
Sbjct: 310 FSEAVNLHPVSIIAAVLVFGGLWGFWGIFFAIPLATLVKAIVNAWPSSVISDPTEPAD 367


>gi|170722651|ref|YP_001750339.1| hypothetical protein PputW619_3487 [Pseudomonas putida W619]
 gi|169760654|gb|ACA73970.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 354

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 158/351 (45%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N + +++ +++ ++  +L+ +  F + +L   I+ F SWP+            T  A +
Sbjct: 7   NNDRLLIQIILLTLLGAALWVMAPFISALLWGAILAFASWPLMRLLTRALGGRETLAAGL 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWT 124
            T + + +  +PL++L +     +++  + V           P WL  IP          
Sbjct: 67  LTSAWILIVALPLVWLGFNLADHVRDATAFVRDVQVDGLPDAPAWLGGIPLVGERLVSGW 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L    +  I S         +++   +++ G   L+  LS++F+     FFYRDG  +
Sbjct: 127 QSLDQQGAALIASVKPHLGQVGNWLLARSAQIGSGVLELTLSLVFVF----FFYRDGPRL 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +  L   L     +    +V   ++    G+   A  + L+    + +AGVP  + L
Sbjct: 183 AAFVLRLLNRLVGERAEYYLELVAGTVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVL 242

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T ++++IP G P+++   + +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 243 GLVTFMLSLIPMGPPLAWIPATAWLVWQGEYGMAVFLGIWGTFVISGVDNVLKPYLISRG 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             LP +    G+ GG+   G +GLFIGP L+A+   +  +      +   +
Sbjct: 303 GNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVGYSLLLDWSRNAGQPTPQ 353


>gi|313885148|ref|ZP_07818900.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619839|gb|EFR31276.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 421

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 110/323 (34%), Gaps = 4/323 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P+++A I+ +   P+      +          I  +S++ L +  +L L      + + 
Sbjct: 58  LPLIAAAILYYLLAPVVRWMTGQ-GIERNVSIWILFISLVLLIVWGILSLVPILRTQFQG 116

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L   +    +    +   +   P       L +   S  +     + +      I     
Sbjct: 117 LAENLPYYAKQLDKLLDTI---PIDWSNDPLLSGIGSFVEDFDFSALSSRMETIISTTFG 173

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                        L ++ M I L++   +G  + + +     + +     +I       I
Sbjct: 174 SLGTVIGNITQVVLGLLTMPIVLYYMLLEGNKLPKHVLYYLPNRYRETAARIIYESHSQI 233

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                G  I+AI   ++    Y + G+   ++  +      +IP           I + +
Sbjct: 234 SRYIRGQIIVAIIVAIIFAVGYSIIGLDYGISFAIFAGFCNVIPYLGSFIAVIPVIIIAV 293

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +      + +  +IE FI  + + P ++G  +++  +     L+G  R  G+ G+ +G
Sbjct: 294 LTSPLMLLKVLIVMSIEQFIEGRFVSPQILGSNLQIHPVTILVVLLGAGRLFGIAGVILG 353

Query: 332 PVLMALIAVIWKESIMAIKENKE 354
               A++ V   E     + + E
Sbjct: 354 VPGYAVVKVFVSELYQVYRNHSE 376


>gi|152980908|ref|YP_001355199.1| hypothetical protein mma_3509 [Janthinobacterium sp. Marseille]
 gi|151280985|gb|ABR89395.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 359

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 84/350 (24%), Positives = 146/350 (41%), Gaps = 3/350 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             Q     +++   L  +  L  F+  V  A ++     P Y   + K  + S   A+  
Sbjct: 6   IQQKTFLALLIAFSLAFIGILLPFYGAVFWAAVLAILFSPFYRKLLIKMNQRSNLAALTT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + + I+PL+ +    + E   L S +     +       +       W      K 
Sbjct: 66  LGICLVVVILPLVLISISLVHEATNLYSNIRSGQLNFSVYFEKVVAALP-TWVVNQMDKF 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +      +     G +FI + A   G    ++ +S   M+  LFF  RDG  I+ 
Sbjct: 125 GLTNIATLQAKLSQAAVQGSEFITKQAISIGQNTFNFLISFTIMLYMLFFLLRDGDKIAA 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L P + + +   +   IR+T  G  I+A  +G + G A+W  GV   +  GV
Sbjct: 185 RIRQAAP-LNPDHKRTLFNNLTTAIRATVKGNIIVAAVQGALGGVAFWFLGVQGALLWGV 243

Query: 247 ITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P  GA + +  V+IY L+ G I+    L  +G + + +VD  LRP LVG   
Sbjct: 244 LMAFLSLLPAVGAALIWVPVAIYFLLTGAIWQGVTLIAFGVLVIGLVDNILRPILVGKDT 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            LP        VGG+  +GL G  IGPV+ AL   +W       ++ + +
Sbjct: 304 ALPDFVVLISTVGGMALLGLNGFVIGPVIAALFMTLWDIFSSGKQKQEAE 353


>gi|85703786|ref|ZP_01034890.1| membrane protein [Roseovarius sp. 217]
 gi|85672714|gb|EAQ27571.1| membrane protein [Roseovarius sp. 217]
          Length = 347

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 109/342 (31%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
               +  V L+FL     P +    I +   P+      +   S      + T+  +  F
Sbjct: 6   AAAVVAFVLLWFLGDVILPFVLGGAIAYFLDPVADRLE-RLGLSRATSVGVITLLAILAF 64

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +    + +   L +                                     +  
Sbjct: 65  VIIALLVIPSLVNQAVALFNIAPELANDLHRFLTTHF----------PSLFEADSALNKT 114

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +LS           +           ++  + ++ + +   +   D  ++  ++D L   
Sbjct: 115 LLSVGETIRERGGQLLETVLSSAASMVNILILLVIVPVVSVYLLYDWDNMVAEIDRLLPR 174

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++R +   + S   GM  + +  G     A  L G+   + +G I  ++  I
Sbjct: 175 DHAPVIRRLARQIDNTLASFIRGMGTVCLILGTYYAVALMLVGLQFGLVVGAIAGLITFI 234

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    I    +++ L      G+  +   +         I    L P LVG  + L  + 
Sbjct: 235 PYVGSIVGGVLAVGLALFQFWGDWVSVGLVAAVFVSGQIIEGNFLTPKLVGSSVGLHPVW 294

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F L       G +G+ +   + A + VI + +I   ++++
Sbjct: 295 LIFALSAFGALFGFVGMLVAVPVAAALGVIARFAIDQYRDSR 336


>gi|114328699|ref|YP_745856.1| hypothetical protein GbCGDNIH1_2035 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316873|gb|ABI62933.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 438

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 117/348 (33%), Gaps = 7/348 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +   ++F + ++L+       P + A  I +   P+      +        A +  
Sbjct: 88  QRVALIGGVLFAVWLTLHLFASILLPFVMAGGIAYFLDPLAGRLE-RLGLPRGVAAGLLI 146

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +++ L ++  L L+   + ++  L+S++         + R  +    G     L    +
Sbjct: 147 AAMILLGLLFALLLYPLIVAQLGILLSRLPAYV----ALVRDTAIDWLGRVQERLGPGFV 202

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +  +                  G    +    ++   +  F+  RD      +
Sbjct: 203 DAKLQDVVSVQAGSLLTVFGRALSRVIGGGFALFNVLTVLVVTPVVAFYLLRDWPKAVAR 262

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D      +    +  +R + +++ +   G  +  +  G+         G+   + LG+ 
Sbjct: 263 VDLWLPRRYAGVVRAQAREINRILSAWLRGQALCCLMLGVFYAVGLSFVGLDLGLLLGLA 322

Query: 248 TAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T I++ IP    +   A   ++ +    +      +         + +  + P  +G  +
Sbjct: 323 TGILSFIPYVGTVLGGAGSFALAMAQFHDWNRVALVAGVFLAGQILENYVIYPRFLGDRV 382

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +L  +   F L  G    G LG+ +   + A+I V+ +  +     + 
Sbjct: 383 ELHAVWVIFALFAGGAAFGFLGVLLAVPMAAVIGVLSRFWLRRYLASP 430


>gi|325267983|ref|ZP_08134630.1| permease [Kingella denitrificans ATCC 33394]
 gi|324980524|gb|EGC16189.1| permease [Kingella denitrificans ATCC 33394]
          Length = 358

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 123/337 (36%), Gaps = 8/337 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   ++   L ++Y L     P + A ++ +   P+      K   + +  ++   + 
Sbjct: 13  WIIGIAVIGSFLFAVYHLSDVLTPFIVAAVLAYILNPLVCKIE-KLGINRSRASMWVMLF 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              L +  LL +    + ++  ++ ++     +          +P      +       +
Sbjct: 72  TFFLIVALLLVIVPMLLQQLHLIIQRIPKLVDYVQT-----QALPWLNQKFDKHIILDEN 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +  + +   +    +        + G        ++I + + L++F  D       + 
Sbjct: 127 TITAWLRANASVIQGNLQKTLPAVMQSGGALASGLSNLILLPLLLYYFLLDWSHWEDGVR 186

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++    +   + +I+  +  V+     G  ++ +  G++ G+   L G+ S  A+G++  
Sbjct: 187 TMIPRRYLDGYNRIAGNMDTVLGEFLRGQLMVMLIMGMLYGTGLMLTGLDSGFAIGMVAG 246

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA--IELFIVDKTLRPFLVGGPIKL 307
           I+  +P     +   ++    +         L +WG   +   +    + P +VG  I L
Sbjct: 247 ILVFVPYLGAFTGLLLATLAAVLQFNTWGGLLAVWGVFAVGQLLESFLITPKIVGDRIGL 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   +  G +G+ I   L A+  V+ +E
Sbjct: 307 SPFWVIFSLMAFGQLFGFVGMLIALPLAAICLVLIQE 343


>gi|163853214|ref|YP_001641257.1| hypothetical protein Mext_3812 [Methylobacterium extorquens PA1]
 gi|163664819|gb|ABY32186.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 651

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 102/355 (28%), Gaps = 24/355 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++   +  +++ +LYF +  F P++ A+++ F   P+ +              V + +
Sbjct: 23  RGLLTLAVGVVLVTALYFGREVFIPLVLAVLLSFVLAPVVN-----LLRRLRLGRVPSVI 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +  +      ++  L   +             L     G  +      +  
Sbjct: 78  VAVLLALTVIGGIGAVIGTQVAGLAGDLPQYQATVQKKFAGLQAGWLGNASRIFQRFNHQ 137

Query: 129 HPQSLKILSETFLKTNGID-----------------FIPRFASRFGMIFLDYCLSIIFMI 171
              + +         +                         A +     ++   ++  ++
Sbjct: 138 VHNATQKADAAGTAASTGPAGDTPKAQLVKVQEPDPSPFTLAEKVLGPIVEPLTTVGIVL 197

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + + F       +  ++  L                   + + FL    +    G ++G 
Sbjct: 198 VVVVFLLLQREDLRNRMIRLFGSGDLHRTTMAMDDAAGRLGTYFLAQLGMNATFGFIIGL 257

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIEL 289
             W  GVP+ +  GV +A+M  +P           + L               +   +  
Sbjct: 258 GLWFIGVPNPLLWGVFSALMRFVPYIGAFLSALFPLALAAAVDPGWSMVIATAILFLVVE 317

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    + P L G    L         +      G +GL +       + V+ + 
Sbjct: 318 PLFGHVIEPLLYGHSTGLSPFAVIVSTLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|260587474|ref|ZP_05853387.1| sporulation integral membrane protein YtvI [Blautia hansenii DSM
           20583]
 gi|331084128|ref|ZP_08333234.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|260541739|gb|EEX22308.1| sporulation integral membrane protein YtvI [Blautia hansenii DSM
           20583]
 gi|330401983|gb|EGG81556.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 385

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 110/336 (32%), Gaps = 2/336 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   + + +  +  +    FF P +   +I   + P+      + + +    +++  ++V
Sbjct: 14  IFTLLAVVLGGLIAFKFIRFFMPFVIGWLIALIANPLVRMLERRMKVARKHTSMLLIIAV 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLS 128
           +   I  + F+    + E   L+ +            +   +          +   K ++
Sbjct: 74  LAAIIGGIYFIGMKTLQEASSLIEQAPEIYSSFREDFQEAGENLSMIIEELPDGVQKGIA 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q                     AS F        ++IIF I++ +FF  D   I +  
Sbjct: 134 DFQDSLGNMIGTAVGKISQITVDQASNFAKNLPSIIIAIIFTILSSYFFIADRDKILEFG 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L    WK + R    +    F     I     ++L   + +  V   + +  + 
Sbjct: 194 REHTPQLIQEKWKILERCFRSIFGGYFKAQFKIMGVVFVILCIGFLILKVNFAIVVAFLV 253

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + + M+P     +         I           +   +   ++ + + P +VG  I + 
Sbjct: 254 SFLDMLPFFGTGTALIPWALFKILSGDMQYAVGLIILYLTTQLIRRIIEPKVVGDSIGID 313

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L T   +  G R  G+LG+ +   + A+I   +  
Sbjct: 314 PLWTLICMYTGYRFAGVLGMILAVPVGAIIVNFYHA 349


>gi|237785193|ref|YP_002905898.1| hypothetical protein ckrop_0588 [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758105|gb|ACR17355.1| putative membrane protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 453

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 100/323 (30%), Gaps = 14/323 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L  +     PV+ ++I+    WP         +      A++  +    + I  L  +
Sbjct: 83  YGLGLIWSALLPVMISIIVCTLLWPPVHWLTKH-KVPHALSAIVVILGAAVIVIGTLSLV 141

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + + + L  +   + +                  ++   +  +H Q       + +
Sbjct: 142 TTSVIDQSESLAHRASHSLRETKEALNGPPLNIKDAQLNQALDQAAAHIQEHSGSLVSSV 201

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            +          +            +  +++  FFF  DG      +D         +  
Sbjct: 202 LSGASAASSVAVT------------LGIVLMLTFFFLNDGHKFLPWIDRQFSGSIGTHLH 249

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I     K +        II+    + +     +  VP  +AL V+      IP    + 
Sbjct: 250 EIFARSWKTLGGFIRAQAIISFLNSVFIAIGLSILHVPLALALAVLNFFCGFIPIFGALV 309

Query: 262 FTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             AV++ +        +A    L   +   I    L P L    + L  +     +  G 
Sbjct: 310 AGAVAVVIAFVANGWISALLTALLILLVHQIEGNVLSPILQSRAMNLHPVIILASVAIGG 369

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
              G++G F+   L A+ AV+ +
Sbjct: 370 SVYGVVGAFLAVPLAAVGAVLLR 392


>gi|255656234|ref|ZP_05401643.1| hypothetical protein CdifQCD-2_11174 [Clostridium difficile
           QCD-23m63]
 gi|296450331|ref|ZP_06892090.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296878743|ref|ZP_06902746.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296260824|gb|EFH07660.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296430250|gb|EFH16094.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 364

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 111/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
               +  L     P + A ++ +   P+     SK      +  ++    ++ + I  +L
Sbjct: 30  FFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVLIVILISFIL 89

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           F     +  + +LV+++             L      +  + L  K         +   +
Sbjct: 90  FTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTL--KEYGDKIMSVMPKFS 147

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    +  I       G   + + L  I     L    +      + +       +  +
Sbjct: 148 NLLIGSLGGIFSTTFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDF 207

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++ + +   I   F G  + +   G++ G   +       +  G I  +M M+P   P
Sbjct: 208 IIELCQSLNLNIGKYFTGKILDSFIVGVLSGIGLYFLKSEYALLFGTIMGVMNMVPYFGP 267

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +   A  + + +  N   A    ++  I   +    + P +VGG + L    T   +  G
Sbjct: 268 VIGMAPVVIINLFSNPTTALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFTILAVTVG 327

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G+ G+ +   +M +I + + E +    +  +
Sbjct: 328 GGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQ 362


>gi|71734505|ref|YP_274223.1| putative lipoprotein [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|71555058|gb|AAZ34269.1| lipoprotein, putative [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 349

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 157/349 (44%), Gaps = 5/349 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALIWGAVLAFASWPLMRLLNRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVAL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         +++   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMATLKPHLGQVGNWVLARSAQIGSGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +  
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERAR 346


>gi|84393813|ref|ZP_00992559.1| putative permease [Vibrio splendidus 12B01]
 gi|84375553|gb|EAP92454.1| putative permease [Vibrio splendidus 12B01]
          Length = 361

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 131/334 (39%), Gaps = 2/334 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+     K       +++++ V +  + ++PLL +F   +
Sbjct: 29  IEPYVNSIVMAFIISLLMFPIHEWLEKKLPNKENIVSLLSCVILTFIIVIPLLAVFAAIV 88

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +             HG I        +   +     +    +              T+ 
Sbjct: 89  QQGSLFSQNTYQWVTHGGIQTLFAHPLVVKALSFVNNYLPFDNIEPQAIAQKVGEFATSF 148

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +++      ++ +    M+  LFF  RD   I   +  +   L  +   K+  
Sbjct: 149 GSKLVGISAKILGDATNFLMDFFLMLFVLFFLLRDHDKIISVVRHILP-LSRSQEDKLLT 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +V +S  +G  + AI +G   G   W+AG P      ++     +   G  + +   
Sbjct: 208 EIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGFPGLFWGTMMGFASFIPVVGTALIWIPA 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + YL + G+   A  L ++    +  +D  LRP L+ G   +  L  FF L+GG++  GL
Sbjct: 268 ATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGIQLFGL 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GL  GP++ A+  V++       K+   +   +
Sbjct: 328 IGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDKS 361


>gi|330469819|ref|YP_004407562.1| hypothetical protein VAB18032_29456 [Verrucosispora maris
           AB-18-032]
 gi|328812790|gb|AEB46962.1| hypothetical protein VAB18032_29456 [Verrucosispora maris
           AB-18-032]
          Length = 425

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/344 (11%), Positives = 108/344 (31%), Gaps = 16/344 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  +  + + + L    G    V+ AL +     P      +             T++
Sbjct: 98  GALGVLSAYAVYLGLRNAAGILVLVVIALFLAVGLHPAVVRLCAW-GLPRGLAVAAVTLT 156

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L    +L L    + +  + + ++                              L  
Sbjct: 157 VLALLAAGVLALVPPIVTQSGQFLDQLPSYLDTLRR---------------NEAVNDLVV 201

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L   ++     + +            +       ++ +++   +F      + +   
Sbjct: 202 RFDLMRRAQEAANADVVGRALGGVLGGAQLVFGTVFRVLTVLVLTIYFLVYFDRMRELGY 261

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L         + I   +   + +  +G   IA+  G+       + G+P   AL V+ A
Sbjct: 262 ALVPRSRRERVQLIGDEILTKVGAYMVGALSIAVLAGVTTFVFALIVGLPYPFALAVVVA 321

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP         +   +    +        ++  +   I +  + P ++   + +  
Sbjct: 322 VTDLIPQIGATLGAVIVSLVGFATDPSVGIACVVFFVVYQQIENYLIYPKIMRRSVHVNE 381

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +      + GV  +G++G  I    +A   +I +E ++  ++ +
Sbjct: 382 VAALVAALLGVSLLGVIGALIAIPTVAATQLILREVVLPRQDAR 425


>gi|299537107|ref|ZP_07050410.1| hypothetical protein BFZC1_13853 [Lysinibacillus fusiformis ZC1]
 gi|298727348|gb|EFI67920.1| hypothetical protein BFZC1_13853 [Lysinibacillus fusiformis ZC1]
          Length = 399

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 126/341 (36%), Gaps = 5/341 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI        +    P + A+I  +   P+ +  +  +     +  +I  ++V+ +  
Sbjct: 46  VSFIFTPLQVLFEVVILPGVLAVIGYYLLRPLLAILVRWR-IPRIWGILILYIAVIGVIT 104

Query: 76  VPLLFLFYYGMLEMKELVSKVVLAN----QHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           + ++ ++ +   +   L  +         Q+ +               S  + + L++  
Sbjct: 105 LLVVLVYPFLRDQFTNLAQEFPEYFMAFTQNIVEFLNHSRFNEYLDKISFNFDEVLNNFT 164

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  + +   + TN    +    + F        LS++ +   LF+  ++G  + + +  +
Sbjct: 165 TDMVKTVKDMATNVAQGVASGITGFLSTLTGILLSLVTVPFILFYLLKEGEKLPKFMLKV 224

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      I   + K I S   G  ++++  G ++   + + G+   + LG +  I 
Sbjct: 225 CPPRMRKEVTDIFHDMDKQISSYIQGQILVSMCIGAMVTIGFLIIGMKYALLLGFLAMIT 284

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +++P   P+     ++ + +  +      L +   I   I  K + P ++G  + +  + 
Sbjct: 285 SVVPYLGPVIAITPAVIIALVTSPLMLIKLAIVWTIVQLIEGKFISPQIMGKSLSIHPIT 344

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             F L+      G+ G+ +G    A+  V+        K+ 
Sbjct: 345 IIFVLLTAGSLFGVPGVILGIPGYAIFKVLVTHLFKLFKQR 385


>gi|217968723|ref|YP_002353957.1| hypothetical protein Tmz1t_0268 [Thauera sp. MZ1T]
 gi|217506050|gb|ACK53061.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 363

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 168/344 (48%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + I+ +++  ++++S   L  F  PV  A+II F +WP+Y    ++     T  A++
Sbjct: 9   IVRRVILGFLLGGLLVLSYAVLHVFIVPVAWAIIIAFATWPLYRKLRARLRRYPTVSALL 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
            T+ +   FI+P L++      E+   ++ V    + G + +P ++  +P      +   
Sbjct: 69  MTLLLSAAFILPALWMGALLRTEVGVAIATVTAQIKAGSLALPDFIRSMPWVGDWLQSLL 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+          T     G D         G           F +I +FF YRDG  +
Sbjct: 129 DSLTGDPDAFRAQLTEWVRQGSDQAVALIGDVGRNAAKL----GFALITVFFLYRDGDRV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             Q+  +               V  + ++   G+   A+G+GLV G  YW AG+P+ V L
Sbjct: 185 LAQVQVVLHRFLGERVDAYLAAVGGMTKAVVWGLIATALGQGLVAGLGYWWAGLPAPVLL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G +TA++AMIP G P ++ ++ ++LL+ G+      L LWG + +  VD  +RP ++   
Sbjct: 245 GAVTALIAMIPFGTPFAWGSLGVWLLVSGDTAAGIGLLLWGTLVVSWVDNLIRPLVISNA 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            ++PFL   FG++GG+   GL+GLF+GPV++A++  +W+E I  
Sbjct: 305 TQIPFLLVMFGVLGGLAAFGLVGLFLGPVVLAVLMAVWREWIEE 348


>gi|21323795|dbj|BAB98421.1| Predicted permease [Corynebacterium glutamicum ATCC 13032]
          Length = 440

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 104/345 (30%), Gaps = 14/345 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R +M + + +     +FI+   +        PV  A+II        S    K    S  
Sbjct: 9   RVSMWSLRLVFVAAAVFILWWVIGRFWQGVLPVTLAIIICTVLSSPNSWL-RKHGVPSVV 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I   +   +    L  +      + + L  +                     +W   
Sbjct: 68  SAFITIGTFFAVVGAILWLIAPSIAQQSQVLYFQAFEGILSIQ------------LWLQG 115

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S   S           N    I               +++  +++  FFF +DG
Sbjct: 116 PPLNLDSGDLSRYFNEAAAWLQNQAGAIAGEIFSGLGAATSVIVTLGVVLVLTFFFLKDG 175

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                    +G      +  ++       +        +++  + + +G    + GVP  
Sbjct: 176 HRFLPWTRKIGGKQAGWHVTELLTRAWTTLSGFVRAQALVSAVDAVFIGIGLLIVGVPMA 235

Query: 242 VALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +AL VIT +   IP     +      +  L+      A  + +       +    L P L
Sbjct: 236 LALSVITFVAGFIPIIGAFTAGALAVLVALVSLGFTEAVIVLVIVVAVQQLEGNILSPLL 295

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               + L  +     +  G    G++G F+   + A+IAV ++  
Sbjct: 296 QSKAMNLHPVIVLLSVTVGGTLFGIVGAFLAVPVAAMIAVFFRYF 340


>gi|330987461|gb|EGH85564.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 349

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 149/348 (42%), Gaps = 3/348 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  M L   PL++L +     +++    +      G+P P        G+       
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDP---PQWLAGIPLVGERL 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L      +  +        +  +  +            L +   I+  FFFYRDG  +
Sbjct: 119 VALWTTIDQQGAAFMATLKPHLGQVGNWVLARSAQIGSGILELTLSIVFAFFFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + L
Sbjct: 179 AAFVLSLLERLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +  
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERAR 346


>gi|92119311|ref|YP_579040.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
 gi|91802205|gb|ABE64580.1| putative GAF sensor protein [Nitrobacter hamburgensis X14]
          Length = 782

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 103/353 (29%), Gaps = 10/353 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   +     +   ++L  LY+ +    P+  A +I F   P  +   ++        
Sbjct: 24  RELDIVKVAAALVSGGVLLGGLYYGRQILIPLAIAFLITFALNPPVTWL-ARLGLPRLLA 82

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  V+V+C  +     L         EL +           + + L          ++
Sbjct: 83  TSLVMVTVVCTLVGLGTILGTQVRSIAVELPAYQSTVLTKLADLRQNLKAPGLFDRVLKI 142

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPR------FASRFGMIFLDYCLSIIFMIIALFF 176
           + +     +              ++ +P        A  + M   +   +   ++I +F 
Sbjct: 143 FERVQKEVELKDNRPAEGSLPQRVEIVPEPQTPFEQAFAWLMRSAEPLATSGIILIFVFL 202

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   +  +   L    F        +     I    L   ++ I  G++L +  W+ 
Sbjct: 203 ALLDFADLRDRFLRLLGGNF-HRSTDAIQEAGARISRYLLMQLLVNISYGVLLATGLWII 261

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDK 294
            VP  +  G + AIM  +P   P+      I L                   +   I   
Sbjct: 262 AVPGALLWGAVGAIMRFVPYIGPLIAAIFPITLAFAVDSGWSMLLWSVALIVMLELISSN 321

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            + P L G    L  +             G LGL +   L   + V+ +    
Sbjct: 322 IVEPLLYGSSTGLSAISLIAAATLWTVLWGPLGLILSTPLTVCLLVLGRNLPQ 374


>gi|255022095|ref|ZP_05294099.1| Putative permease often clustered with de novo purine synthesis
           [Acidithiobacillus caldus ATCC 51756]
 gi|254968453|gb|EET26011.1| Putative permease often clustered with de novo purine synthesis
           [Acidithiobacillus caldus ATCC 51756]
          Length = 372

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 117/346 (33%), Gaps = 10/346 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +     + +    LY L     P L A I+ +   P+ S        S T    +  V
Sbjct: 12  QRLYVLAALVVAAYLLYRLGAVLTPFLIAGILAYLGNPLVSRLQRW-GLSRTVGTTLVFV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +    +  L      +    +       +                 ++ L  +  S
Sbjct: 71  LVLLVVAGIVTALLPAIRHQALLFLDYTRQYAELLQRQI-------VPELSARLGIQLDS 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +      + +    R A       L   L I+ + +  F+  RD   + +++
Sbjct: 124 QTITHYASANAQKLADWLGKSLRIAVSSSSGILATLLDIVLIPVLGFYLLRDWPQLLERI 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         + ++R    ++ +   G  ++ +  G        + G+ + + +G++ 
Sbjct: 184 RELIPRRRLPTVELLARDANTMLMAFLRGQILVMLALGTSYAIGLSIVGLQTAILIGLLA 243

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++ +P    IS  +++     +  G       +++   I   +      P+LVG  I 
Sbjct: 244 GFLSFVPYLGVISGISMATLAMYIQTGAFLPMVGVWVVFGIGQILESMVYTPYLVGERIG 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L  +   F ++ G    G +GL +   + A++  + + +     ++
Sbjct: 304 LHPVLVIFAVLAGGELFGFVGLLLALPVTAVLIALLRHAQRWYLDS 349


>gi|296535051|ref|ZP_06897315.1| possible permease [Roseomonas cervicalis ATCC 49957]
 gi|296264622|gb|EFH10983.1| possible permease [Roseomonas cervicalis ATCC 49957]
          Length = 370

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 116/354 (32%), Gaps = 7/354 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    N +  +   ++   L  L+       P + A  I +   P+ +    +       
Sbjct: 12  RTATRNQRLALVLGLLGAALFLLWLFSAILTPFVLAACIAYFLDPLATRLS-RLGVPRGL 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++    +M L ++ LL L+   + ++  L++++           +             
Sbjct: 71  AALVLVTGLMGLALLALLLLYPLIIAQVGTLLARLPSYAAGIASALQE----ALAGLEER 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +          +S+     + +          G         ++   +  F+  RD 
Sbjct: 127 FGPEVFDTRLRDLAVSQIGAILSFLGAAATRLIGGGYALFSVFTLVVVTPVVAFYLLRDW 186

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I  +L+S       A  ++++R   +V+ +   G  +                G+   
Sbjct: 187 PRIMLRLESWLPRRSAAVLRQLARDTDRVLSAWLRGQLLCCALLAAYYAVGLSAVGLELG 246

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + +G+ + +++ IP     +  A ++ L     G       +         I    + P 
Sbjct: 247 LMVGLASGLLSFIPYVGSATGLATALLLAVGQFGTWDGVGLVAAVYVAGQTIEGYIIYPR 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+G  ++L  +   F L  G    G LG+ +   + A + V+ +  +    E+ 
Sbjct: 307 LLGDRVELHAVWVIFALFAGGVAFGFLGVLLAVPMAAALGVLARYWLRRYLESP 360


>gi|289168140|ref|YP_003446409.1| hypothetical protein smi_1301 [Streptococcus mitis B6]
 gi|288907707|emb|CBJ22544.1| conserved hypothetical protein [Streptococcus mitis B6]
          Length = 388

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVINDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|206563261|ref|YP_002234024.1| hypothetical protein BCAM1409 [Burkholderia cenocepacia J2315]
 gi|198039301|emb|CAR55266.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 356

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 163/344 (47%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              Q     +   +++++L+ ++ F   +  A +I    WP+   F       +  T +A
Sbjct: 16  RAQQIARVALYAALLVLALWVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRDRPTLIA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T ++  L ++P+       + +  +L   +     +GIP+P  +S +P G      W
Sbjct: 76  TVITAAISLLVVLPVAVATTQAIAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEW 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + T +     +    F  +FG       L   FM++ LF   R G  
Sbjct: 136 WQANLGHP---LHAATAMHGVNSEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHK 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F     ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    
Sbjct: 193 LSGALLQGARRAFGRNGAELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAAL 252

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++TA+ AM+P  AP+ F   +++L ++G    A  +   G I +F+ +  +RP L+GG
Sbjct: 253 LGLVTAVAAMLPFCAPVVFCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGG 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E I 
Sbjct: 313 STRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|257486360|ref|ZP_05640401.1| putative lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628087|ref|ZP_06461041.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289646709|ref|ZP_06478052.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str. 2250]
 gi|320324915|gb|EFW80987.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. B076]
 gi|320329281|gb|EFW85278.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. race
           4]
 gi|330867463|gb|EGH02172.1| putative lipoprotein [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|331010639|gb|EGH90695.1| putative lipoprotein [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 349

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 149/348 (42%), Gaps = 3/348 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  M L   PL++L +     +++    +      G+P P        G+       
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDP---PQWLAGIPLVGERL 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L      +  +        +  +  +            L +   I+  FFFYRDG  +
Sbjct: 119 VALWTTIDQQGAAFMATLKPHLGQVGNWVLARSAQIGSGILELTLSIVFAFFFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + L
Sbjct: 179 AAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +  
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERAR 346


>gi|325292516|ref|YP_004278380.1| permease [Agrobacterium sp. H13-3]
 gi|325060369|gb|ADY64060.1| putative permease [Agrobacterium sp. H13-3]
          Length = 379

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 106/325 (32%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++ + +  L        P ++ + + +   P+      +   S     V+
Sbjct: 10  LRRQVFFWIGVLAVFIFFLMVFSSILLPFVAGMALAYFLDPVADWLERR-GLSRLMATVV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + +F + L+ +      +  E ++++         +           W S     
Sbjct: 69  ILVTFVLIFALSLIIIIPLIAAQASEFITRIPQYISSLQQLIAGADANLLPDWVSNQINA 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   L            I  +       G   +D    ++   +  F+   D   + 
Sbjct: 129 VKENFSKLLTE-----GAGFIGTLLTQIWNSGKSLVDVMSLLVVTPVVAFYLLLDWDRMI 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++DS     +    ++I+R + + I     G   + +  G+       L G+   + +G
Sbjct: 184 DKVDSWIPRDYVHTVRQIARDMDRTIAGFVRGQGSLCLILGVYYAVGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL---FLWGAIELFIVDKTLRPFLVG 302
           + + +++ IP    +    +++ + I     +   +           FI    L+P LVG
Sbjct: 244 LFSGLISFIPYIGSMVGLILAVGVAIVQFWPDYIYVFLTLAVFFSGQFIEGNILQPKLVG 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L       G +G
Sbjct: 304 SSVGLHPVWLMFALFAFGALFGFVG 328


>gi|330959036|gb|EGH59296.1| putative lipoprotein [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 349

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 158/350 (45%), Gaps = 5/350 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           + ++  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMSLCWMLLVAAPLVWLGFNLADHVRDATGLIKNIQVDGLPDPPQWLAGIPLVGERLVAL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         +++   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMTTVKPYLGEVGNWLLARSAQIGGGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  + +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAVFMGIWGMFVISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +   
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARN 347


>gi|146310488|ref|YP_001175562.1| hypothetical protein Ent638_0826 [Enterobacter sp. 638]
 gi|145317364|gb|ABP59511.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 369

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 143/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +F+ VL A I+     P+ +   S   E +   +++  
Sbjct: 7   TKGFFILILAIVSLAFFDILAPYFSAVLWASILAVIFHPVKNKLRSMMGERNGLASLLTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  +   PL+ +     +E+  + +K+   N     V   L       WA      H 
Sbjct: 67  VIICLIVFTPLIVILSSLAIELNVVYTKLQHTNSQFPEVVASLFAHLP-EWARNFLVDHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      +     G  ++   A   G     + +S   MI  LFF  +DG  + +Q
Sbjct: 126 LDNAAQIQQKLSDAALKGGQYLAGSAFLIGKGTFGFAISFGIMIYLLFFLLKDGPYLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G++ G A+++AG+   +  G +
Sbjct: 186 ILDSLP-LSDFVKQHLFAKFAAVSRATVKGTVVVALVQGILGGIAFYIAGIDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +++L     ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAVFLFATQQLWQGFFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W          N ++I   F
Sbjct: 305 MPDYLILISTLGGMEIYGINGFVIGPLIAALFIACWNILSGRDHAGNSDEIDEAF 359


>gi|54307733|ref|YP_128753.1| putative permease [Photobacterium profundum SS9]
 gi|46912156|emb|CAG18951.1| putative permease [Photobacterium profundum SS9]
          Length = 361

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 144/354 (40%), Gaps = 2/354 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +   ++   +   +  S   ++ +  P++ A II    +P+++   SK        A+++
Sbjct: 9   SRHWMLIVALGIAVYASYRLIEPYIGPIVMAFIISLLYYPLHARIESKISNKPNSAAILS 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
            + +  + ++PLL +F   + +              G          +   +   E W+ 
Sbjct: 69  CILLTFIIVIPLLIVFSSIVHQGTTFSKDSYTWFSSGGAKELLAHPYVQKVLLLIEKWSP 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    +       +     +   +++      ++ +S + M+  LFF  RD   + 
Sbjct: 129 FEGIDTQAILQKIASAASKFGAQLLNISAKILGDATNFVISFMLMLFVLFFLLRDHTKMV 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +   L  +    +   V +V +S  LG  + A+ +G   G A WLAG P      
Sbjct: 189 NAVRHVLP-LSRSQEDVLLTEVEQVAKSAVLGSFLTALAQGFAGGFAMWLAGFPGLFWGS 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++     +   G  + +   ++YLL+      A  L  WG I +  +D  LRP L+ G  
Sbjct: 248 MMAFASFIPVFGTALIWLPATLYLLLINQWEWALFLSGWGIIVVGSIDNILRPLLMQGNS 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +  L  FF ++GG+   GL+GL  GP++ A+  V++K   +  K+  ++ + +
Sbjct: 308 GMNTLLIFFSILGGLHLFGLIGLIYGPIIFAVTLVLFKLYEVEFKDFLDQQNQS 361


>gi|152988070|ref|YP_001347913.1| hypothetical protein PSPA7_2549 [Pseudomonas aeruginosa PA7]
 gi|150963228|gb|ABR85253.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 352

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 130/330 (39%), Gaps = 3/330 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + L  F+  V    I+     P+      + ++     A+I     + + I+P++F+ 
Sbjct: 22  FGWLLLPFYGAVFWGTILAIIFAPVQRRLQVRLKDRKNLAALITLSICVLIVIIPVIFIA 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E   +  +V     +     +            +   +      +      + + 
Sbjct: 82  GSLVQEGASVYQRVKSGELNFAAYLQQAVAALP-PSVHQWLERFDLTNLASLQEKLSSVA 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   A   G    D+ +S   M+  LFF  RDG  + +++      L   +   
Sbjct: 141 MQASQVVATKAFSIGQNTFDFVISFGIMLYLLFFLLRDGRVLGRRIKQAVP-LSQEHKHH 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPIS 261
           +      VIR+T  G   +A  +G + G  +WL G+   +  G + A ++++P  GA + 
Sbjct: 200 LFAKFTTVIRATVKGNIAVAATQGALGGLIFWLLGIEGALLWGTLMAFLSLLPAIGAALI 259

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ Y L+ G I+    L L+  + + +VD  LRP LVG   K+P        +GG+ 
Sbjct: 260 WAPVAAYFLLTGAIWQGVVLILFCVVVIGLVDNILRPILVGKDTKMPDYVVLISTLGGMA 319

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL G  IGP++ AL    W       +E
Sbjct: 320 LFGLNGFVIGPLIAALFMASWDLFTGREEE 349


>gi|90413138|ref|ZP_01221134.1| putative permease [Photobacterium profundum 3TCK]
 gi|90325829|gb|EAS42281.1| putative permease [Photobacterium profundum 3TCK]
          Length = 361

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 144/354 (40%), Gaps = 2/354 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +   ++   +   +  S   ++ +  P++ A II    +P++    SK        A+++
Sbjct: 9   SRHWMLIVALGIAVYASYRLIEPYIGPIVMAFIISLLYYPLHIRIESKIPSKPNSAAILS 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
            + +  + ++PLL +F   + +              G          +   +   + W+ 
Sbjct: 69  CILLTFIIVIPLLIVFSSIVHQGTTFSKDSYTWFSSGGAKELLAHPYVQKVLLLIDKWSP 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +       +     +   +++      ++ +S + M+  LFF  RD   + 
Sbjct: 129 FESIDTQAILQKIASAASKFGAQLLNMSAKILGDATNFIISFMLMLFVLFFLLRDHAKMV 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +   L  +    +   V +V +S  LG  + A+ +G   G A WLAG P      
Sbjct: 189 NAVRHVLP-LSRSQEDALLTEVEQVAKSAVLGSFLTALAQGFAGGFAMWLAGFPGLFWGS 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++     +   G  + +   ++YLL+      A  L  WG I +  +D  LRP L+ G  
Sbjct: 248 MMAFASFIPVFGTALIWLPAALYLLLINQWEWALFLSGWGIIVVGSIDNILRPLLMQGNS 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +  L  FF ++GG+   GL+GL  GP++ A+  V++K   +  K+  ++ + +
Sbjct: 308 GMNTLLIFFSILGGLHLFGLIGLIYGPIIFAVTLVLFKLYEVEFKDFLDQQNQS 361


>gi|330888175|gb|EGH20836.1| putative lipoprotein [Pseudomonas syringae pv. mori str. 301020]
          Length = 349

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 149/348 (42%), Gaps = 3/348 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  M L   PL++L +     +++    +      G+P P        G+       
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDP---PQWLAGIPLVGERL 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L      +  +        +  +  +            L +   I+  FFFYRDG  +
Sbjct: 119 VALWTTIDQQGAAFMATLKPHLGQVGNWVLARSAQIGSGILELTLSIVFAFFFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + L
Sbjct: 179 AAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGIFIISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +  
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERAR 346


>gi|56963356|ref|YP_175087.1| transporter [Bacillus clausii KSM-K16]
 gi|56909599|dbj|BAD64126.1| transporter [Bacillus clausii KSM-K16]
          Length = 358

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 101/315 (32%), Gaps = 11/315 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P+  A +  +   PI   F+ +          +  ++ +      L +     
Sbjct: 39  ILATLLGPLCVAFVSAYLLHPIVEWFV-RLGLPRALATFMLFLAFILAIAAMLFWGLPAL 97

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++KE +  +             L              ++L +P    +   +    + 
Sbjct: 98  AAQVKEAMDVLPGQLAEVKKSLLNLQRT----------AENLPNPLDDHVGEWSVKIESF 147

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                    +  +  L   ++ I +   +F+  +D   + +    L    +       + 
Sbjct: 148 AKAGLDQIEQVIIRMLQSFMTWIVVPFLVFYLLKDYELLKRVAFYLTPRKWRKGLTAYAN 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V +   S   G  ++A   G++   A W+ GVP  + LG        IP    I     
Sbjct: 208 DVDRTFGSYVRGQLLVAFCVGVLSTVALWILGVPYPIVLGFFVGATDFIPYFGAIIGAIP 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++   +  +        +   I   I    L P +VG  + L  +     L+ GV   G+
Sbjct: 268 AVGAALLESTTLGLYTVIALVIIQQIEGNLLSPVIVGRTVHLHPMIIIIALLIGVEAGGI 327

Query: 326 LGLFIGPVLMALIAV 340
           +GL I   + A++ V
Sbjct: 328 VGLLIAVPVAAILKV 342


>gi|29829036|ref|NP_823670.1| hypothetical protein SAV_2494 [Streptomyces avermitilis MA-4680]
 gi|29606142|dbj|BAC70205.1| putative membrane protein [Streptomyces avermitilis MA-4680]
          Length = 383

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/357 (12%), Positives = 101/357 (28%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +         + + L G    +L A  +     P  S          
Sbjct: 2   PRWLPRAMVLALALIAGFQFGSWAFHQLTGLLINILIAFFLALAIEPAVSWMAGY-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  +  M +    +  L      ++ ++V          I             W 
Sbjct: 61  GLATFLVFLGAMIVTAGFVTLLGSMLAGQIIKMVEGFPDYLDSVIS------------WV 108

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  +   L        L  +      +              L     ++ + +  F+F  
Sbjct: 109 NTTFHTDLRRVDIQDSLVHSDWLRRYVQNSATGVLDVSAQVLGGLFQLLTIALFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+         G+P
Sbjct: 169 DGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGIAHYILLQSLGIP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               L V   +++  IP        A+ + +    N + A  + ++  +     +  L+P
Sbjct: 229 YAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLIFVVVYQQFENYMLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|329939947|ref|ZP_08289229.1| putative membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329300773|gb|EGG44669.1| putative membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 415

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 100/359 (27%), Gaps = 18/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +         + + L G    +L A  +     P  S   S    
Sbjct: 36  RMPRWLPRAMVLALALIAAFQLGSWAFHQLTGLLINILIAFFLALAIEPAVSWMASH-GL 94

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +  + ++ L    +  L      ++ +++          I             
Sbjct: 95  RRGLATFLVFLCLLLLTAGFVALLGSMLAGQIIKIIEGFPEYLDSLIQWTNT-------- 146

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +   L        L  +      +              L     ++ + +  F+F
Sbjct: 147 ----TFHTELRRVDVQNNLVHSDWLRKYVQNSATGVLDVSAQVLGGLFRLLTITLFSFYF 202

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+      A   +   I             ++A+  G           
Sbjct: 203 AADGPRLRRGLCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALISGAAHYVLLQALE 262

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +P    L V   +++  IP        A+ + +    + + A  +  +  +     +  L
Sbjct: 263 IPYAPVLAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALWVLGFVVVYQQFENYML 322

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P L    + +     F  ++ G   +G +G  +    +A +  +    +       + 
Sbjct: 323 QPKLTARSVDIHPAVAFGSVIAGTALLGAVGALVAIPAIATLQALLGAYVKRYDVTDDP 381


>gi|257867093|ref|ZP_05646746.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257873428|ref|ZP_05653081.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257801149|gb|EEV30079.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257807592|gb|EEV36414.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 393

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 98/327 (29%), Gaps = 5/327 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              FL     P++ A I+ +   P       K      +      + V+ L +  ++ + 
Sbjct: 48  VWQFLAIVGLPIILAGILYYLMNPTVDYLERK-GIKRIYSIFGLFILVVGLIVWGVVVII 106

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +       +             +   P      E          S        L 
Sbjct: 107 PKIQEQSMSFADNLPGYLTIIENKVNEILSDPIFSQVQEQIEASNEKLISSLTDIVQNLS 166

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + I  +  F      I L        M   LF+  +DG  ++                 
Sbjct: 167 RSTIQNLGSFFGAVATIVLAVIT----MPFILFYLLKDGRKLAPYFVKFLPTKMRQPSLV 222

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   + S   G   +A    ++    + + G+   + LG+    + +IP       
Sbjct: 223 VLKEMNDQVSSYIRGQLTVAFAVAVMFMIGFSIIGLDYAITLGIAAGFLNLIPYLGSFLA 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L I G       + +   IE  I  + + P ++G  + +  +     L+   + 
Sbjct: 283 MIPAVFLGIVGGPVLLIQVLIVFVIEQTIEGRLISPLVLGNELSIHPVTILLVLLTSGKL 342

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            GL+G+ +G  + A   V+        
Sbjct: 343 FGLVGVILGIPVYAAAKVVITHVFEWY 369


>gi|322381290|ref|ZP_08055293.1| hypothetical protein PL1_0204 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154866|gb|EFX47137.1| hypothetical protein PL1_0204 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 390

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 124/339 (36%), Gaps = 5/339 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +     +K    P++ A I  +   PI        + +  +  +   + ++ +  
Sbjct: 52  ISFIFVPIGIIVKTVMLPLILAGIAFYLLNPIVDLLERH-KINRIYSIIGLFLVIIGVVT 110

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +L +F +   ++  LV  +    Q         +        ++      +   +   
Sbjct: 111 ILILTVFPFVKDQVLNLVDNLPKYGQQVAEKFNEFAGTSLFHQFNDKLNNVSTDIMNYIS 170

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +  N    +            +  L+I  +   LF+  +DG  + + + ++    
Sbjct: 171 EKSSVILQNAWASVSGVVGTVT----EIVLAIATLPFILFYLLKDGRKLPRFILNMLPVK 226

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +  ++   +   I S   G  I++   G +L   Y + G+   + L +I ++ +++P
Sbjct: 227 TREHTYQMMYEMHHQISSYIRGQIIVSFCIGFLLFVGYLVIGLNYALVLAIIASLTSIVP 286

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     +I +    +      L +   I   I  K + P ++G  + +  +   F 
Sbjct: 287 YLGPVIAITPAIIISAVTSPAMLVKLAVVWIIVQSIEGKFISPQVMGKNLSVHPITIIFV 346

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++ G    G+LG+       A++ VI    +  +K  ++
Sbjct: 347 ILIGGNLFGILGIIFAVPGYAVLKVIVLHILSGLKAIRD 385


>gi|296101461|ref|YP_003611607.1| hypothetical protein ECL_01097 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055920|gb|ADF60658.1| hypothetical protein ECL_01097 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 369

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 146/355 (41%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G   +++  +       L  +F+ +L A I+     P+ +   +   + +   +++  
Sbjct: 7   TKGFFIFILALVTWAFFDVLSPYFSAILWAAILTVIFNPVKNKLRAALGDRNGLASLLTI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +  +PL+ +F    +E+  + +K+   N     V   + +     WAS     H 
Sbjct: 67  GIICLIVFIPLMVIFSSLAIELNVVYTKLQENNTQFPEVVASIFNHLP-DWASGFLADHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +Q
Sbjct: 126 LTNAAQIQKKLSDVALQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPFLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G + G A+ +AG+   +  G +
Sbjct: 186 ILDSLP-LSDFAKQHLFAKFVGVSRATVKGTAVVAVVQGTLGGIAFAIAGIDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +   +I+L     I+    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLVPAVGSAIVWVPAAIFLFATHQIWQGLFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W          N E++ + F
Sbjct: 305 MPDYLILISTLGGMELYGINGFVIGPLIAALFIACWNLFSGRDHAGNAEELDAAF 359


>gi|66045269|ref|YP_235110.1| hypothetical protein Psyr_2029 [Pseudomonas syringae pv. syringae
           B728a]
 gi|302187399|ref|ZP_07264072.1| hypothetical protein Psyrps6_13658 [Pseudomonas syringae pv.
           syringae 642]
 gi|63255976|gb|AAY37072.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330973446|gb|EGH73512.1| hypothetical protein PSYAR_23439 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 348

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 73/349 (20%), Positives = 157/349 (44%), Gaps = 5/349 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVAL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         ++I   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMATLKPHLGQVGNWILARSAQIGSGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +  
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERAR 346


>gi|300214220|gb|ADJ78636.1| Hypothetical membrane spanning protein [Lactobacillus salivarius
           CECT 5713]
          Length = 376

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 121/345 (35%), Gaps = 6/345 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    + F    F PV+ +  + +   P+    +     K + + T    I  ++V  +
Sbjct: 29  FVFQPVVAFFSTLFIPVIISGFLYYMLLPLVKLLMKVKIGKFKINRTGAVAIVFIAVFAI 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + + FL    +++++ L++K            +    +     +S L    L    + 
Sbjct: 89  IAMSIAFLLPKIIVQVENLITKSPTYVSQLEKNFQHF--LKYDSRSSWLKDIDLQSYLNR 146

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S + +    +  +            +  ++++ +   LF+  +DG+ +   +     
Sbjct: 147 FEGSGSEMIAKFMKSLTNSLGSIISAITNITVTVLTVPFMLFYMLKDGYKLMPSILKFVP 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A  + + + +   +     G  I  I  G+     Y LAGVP  +  G+      +
Sbjct: 207 RKRTAQVEAMLQDMSNTLSKYISGQAIECIFVGICTAIGYGLAGVPYALLTGIFAGATNI 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      ++ L +  +   A    +   I   I    + P ++G  + +  L   
Sbjct: 267 IPYIGPYIGLVPALILSLTDSFNTAVMAIIVCIIVQQIDGNLIYPNVIGKSVDIHPLTII 326

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L+   +  GLLG+ +     A+I VI K     I    E    
Sbjct: 327 LLLLVAGKIAGLLGIILCIPFYAIIKVIVKHVREVIILENESSDE 371


>gi|54310026|ref|YP_131046.1| putative permease PerM [Photobacterium profundum SS9]
 gi|46914465|emb|CAG21244.1| putative permease PerM [Photobacterium profundum SS9]
          Length = 356

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 104/352 (29%), Gaps = 12/352 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P  +    I+    +++YF     AP+L A+++ +           +     T  
Sbjct: 11  RRFSDPHAVSLIAILLGGFLTIYFFGNLIAPLLVAIVLAYLLEWPVMRLE-RLGLPRTVA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++  +    L ++    L      ++    S V             L +          
Sbjct: 70  VLVVLLIFAGLMVMAFFGLVPTIWHQVGNFASDVPTMFNDLQHYVSSLPERYPDFVQPHQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +   +   +     +    +  +   A+          + +I + + +FF  +D  
Sbjct: 130 AITFMETLREKVMGLGESVVKGSLASLVSLAT--------IAVYLILVPLLVFFLLKDKD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +  +          K+   + + I +   G        G+     + +  +   V
Sbjct: 182 EMLATMSGILP-KNRRLTSKVGAEMNEQISNYIRGKVTEIFIIGIASYITFAVMDLRYAV 240

Query: 243 ALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  +IP     + T     + L   G   +   L     +   +    L P L
Sbjct: 241 LLSVLVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPDFWWLLAAYGVIQALDGNVLVPVL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               + L  +     ++      G  G+F    L  L+  +W     +  ++
Sbjct: 301 FSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWGALPSSEPDD 352


>gi|282600568|ref|ZP_05979072.2| putative membrane protein [Subdoligranulum variabile DSM 15176]
 gi|282572005|gb|EFB77540.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
          Length = 374

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 101/336 (30%), Gaps = 3/336 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-ISKKEESSTFLAVIATVSVMCLFIVP 77
            I   +       +P    +++ +        F          F  V++ + +  +  + 
Sbjct: 27  AIAGGVQKFMDILSPFAWGIVLAYVLDIPARFFAEKLFGGKRGFAVVLSYLLLFSVVGLL 86

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L  +       +   V ++    +       W+    G     E    ++          
Sbjct: 87  LSLVVPQLAESISSFVGRLSTYEKDIQNALDWVRQTFGIDT--ETLEGYVGELTRELQNW 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +           A+      +D  +++   I  L        ++   L +       
Sbjct: 145 FKSVSGQAAQAAADAAAGVAGAAMDAFVTLAVSIYLLGSKDLLLRAVRTCLRAALPPRQA 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +  +  +       G  + A+  G+       L  +     + V+  +  +IP  
Sbjct: 205 GSLFSVCTMANRTFSGYIGGQLVDALLVGVETFVLMSLFRLDYAPLIAVLVGVTNIIPVL 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P         +L+  +   A    L   +   I    + P ++GG   LP L     ++
Sbjct: 265 GPFIGAVPGAVILLLESPLQAVEFVLIILVVQQIDGNFIAPRIIGGATGLPGLGVLLAII 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G    G+ G+ IG   +A+I  + KE++ A  + +
Sbjct: 325 VGGSLFGIPGMVIGVPTLAVIVTLLKEAVGAGLQAR 360


>gi|83942871|ref|ZP_00955331.1| membrane protein [Sulfitobacter sp. EE-36]
 gi|83845879|gb|EAP83756.1| membrane protein [Sulfitobacter sp. EE-36]
          Length = 359

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 110/350 (31%), Gaps = 14/350 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     +   + LV L+F      P L    I +   P+     +    S     ++
Sbjct: 5   IRDQMKYWGVAGALFLVFLWFTGDVLLPFLIGAAIAYFLDPVADRLEA-MGLSRAMATMV 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + +F++  L +    + +   L        ++                       
Sbjct: 64  ITLVALLIFVLMALLVIPTLINQAINLFEVAPELTRNFTNFL----------TERFPALL 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I S           +   A       L+  +  + + +   +   D   + 
Sbjct: 114 DEGSTLRSSINSIGSTIQERGGEVLNTAISSAASLLNVMVLFVIVPVVAVYLLLDWDRMV 173

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+D L         ++++R + + +     GM  + +  G     A  L G+   + +G
Sbjct: 174 AQIDRLLPRDHAPVIRRLARDIDRTLAGFIRGMGTVCLILGAYYAIALMLVGLQFGLVVG 233

Query: 246 VITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            I  ++  IP    +   A++I L      G+ F+   +     +   I    L P LVG
Sbjct: 234 FIAGLVTFIPYLGAVLGGALAIGLALFQFWGDWFSIGMVAGIFVLGQMIEGNFLTPKLVG 293

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + L  +     L       G +G+     + A + VI + +     E+
Sbjct: 294 NSVGLHPVWLILALSVFGSLFGFVGMLAAVPIAAALGVIARFATEQYVES 343


>gi|27365255|ref|NP_760783.1| putative permease PerM [Vibrio vulnificus CMCP6]
 gi|27361402|gb|AAO10310.1| Putative permease PerM (= YfgO) [Vibrio vulnificus CMCP6]
          Length = 356

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 114/356 (32%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    V++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFVTIYFFGHLLAPLLVAIVLAYLLEWPVAQL-RRFGVPRTV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +  + L ++ L  L      ++  L++ V             L +    +   +
Sbjct: 69  GVIAVILLFIGLMLIALFGLIPTIWTQVGNLINDVPNMYNGLQQFIASLPERYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVEAIVTNAKNKVLGMGESVVKGSLASLISIAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    L          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMMRMASGLLP-KNRNLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGISTEFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +WK      +   + 
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSQDEHEAQP 355


>gi|307705142|ref|ZP_07642018.1| conserved hypothetical protein [Streptococcus mitis SK597]
 gi|307621303|gb|EFO00364.1| conserved hypothetical protein [Streptococcus mitis SK597]
          Length = 388

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KVNRVIAITIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPIYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGISQVIVALI----IVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPIMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|91778031|ref|YP_553239.1| hypothetical protein Bxe_B2098 [Burkholderia xenovorans LB400]
 gi|91690691|gb|ABE33889.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 368

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 160/343 (46%), Gaps = 6/343 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ML+ + +++ M++  ILV  Y  L  F  PV  ALII + +WP+Y    +     +   A
Sbjct: 7   MLDRKRVIQAMLLAAILVLGYVVLWPFVIPVAWALIIAYVTWPLYCRLHALIRGRAWISA 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASEL 122
           ++ T+ V  +  +P+  L      E   L   V      G   VP +++ IP    + + 
Sbjct: 67  LLMTLLVGVVAFIPIASLISPVFREFLALYRNVAEYAASGPLRVPDFIARIPWLGHSLQQ 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +          T      +  +       G   +       F  + LFF YRDG 
Sbjct: 127 LVSEFADDPQRLHAYITQSGDRWVGELASMVGSVGRNAVKL----GFATLTLFFAYRDGR 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++  Q+  +   +           +  V RS   G+ + A+ +G + G  YW AGV + +
Sbjct: 183 ALLLQVQGVMRPVLGDRLDGYLSAIGGVTRSVVYGLALTAVVQGALAGLGYWAAGVKAPL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L +IT + A+IP G P  +  V + L+  GN+F    L LWGA+ +  VD  +RP ++ 
Sbjct: 243 LLTIITTLAALIPFGTPFVWIPVGVGLIANGNMFAGVGLLLWGALVVSWVDNLIRPMVIS 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             +++PFL   FG++GG+   G +GLF+GPV++A++  +W+E 
Sbjct: 303 NAVRVPFLLILFGVLGGIGAFGFIGLFVGPVVVAILLALWREW 345


>gi|116871971|ref|YP_848752.1| hypothetical protein lwe0551 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740849|emb|CAK19969.1| putative membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 389

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/364 (14%), Positives = 128/364 (35%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 K +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKK-KWKRGWAIALLYIVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQRF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +  + ++S          T +  + I  I         + L    + 
Sbjct: 128 NEFSRSSLFDQLKDKLSTNMSDIMKTISTKGTSVVNSAISSIGNIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|241895354|ref|ZP_04782650.1| permease [Weissella paramesenteroides ATCC 33313]
 gi|241871328|gb|EER75079.1| permease [Weissella paramesenteroides ATCC 33313]
          Length = 384

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 105/322 (32%), Gaps = 11/322 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISK-----KEESSTFLAVIATVSVMCLFIVPLLF 80
           F+   F P++ +  + +   P+  +         K  S  +   I  + ++ + +  +L 
Sbjct: 40  FIGAVFVPLIISGFLYYILNPVVVALQKIPLGKVKHVSRGWAITIVMLLLLGILVALVLT 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + ++  L+  + +           LS I             +             
Sbjct: 100 LLPALVDQISGLIKNIPVLVDTIQHWGNQLSKINFSKEYG------IDFNLDKLQQEVQN 153

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    S        + ++ I + +   +   DG  ++  +  +      +  
Sbjct: 154 IGKTVVSGMATSLSAVIAKLTGFTVTAITVPVMTIYMLNDGHKLAPFVQKVFPERQRSRI 213

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I   + K +     G  +  I  G+     Y++ G    + LGV   I  MIP   P 
Sbjct: 214 SDILGRLNKTLAQYISGQVVEMIFVGVFTAVGYFVIGQKYALLLGVFAGITNMIPYVGPY 273

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                ++++ I  +I+    +     I   I    + P ++G  + +  L     L+   
Sbjct: 274 IGLVPALFVAITDSIWQVVWVIAVVLIVQQIDSNLIYPRVMGASLHIHPLTIIVLLLAAG 333

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              G+ G+ +     A+I  I 
Sbjct: 334 NIAGIAGMILAVPFYAVIRTII 355


>gi|148548739|ref|YP_001268841.1| hypothetical protein Pput_3531 [Pseudomonas putida F1]
 gi|148512797|gb|ABQ79657.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 354

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 142/339 (41%), Gaps = 3/339 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  ++  + +   + L  ++  +  A+I+G    P+    + +        A  +T
Sbjct: 7   QNKALAVLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRCGRRRNLAAATST 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+P++      + E   L  ++               D+        L    +
Sbjct: 67  LVCLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQRGLDNMGM 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF RDG  ++++
Sbjct: 127 GNLDGLRDKIAKW-ATQGSQVLASQAFSFGQGTFEFLISFGIMMYLLFFFLRDGPEVARR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+
Sbjct: 186 VRMAVP-LPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPSALVWAVL 244

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAVGAGIIWAPVAAYFLLTGAILPGVVLTAFGVLVIGLVDNVLRPILVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P        +GG+   GL G  IGP++ AL    W   
Sbjct: 305 MPDYLILVSTLGGLAVFGLNGFVIGPLIAALFVSSWAIF 343


>gi|229589365|ref|YP_002871484.1| hypothetical protein PFLU1848 [Pseudomonas fluorescens SBW25]
 gi|229361231|emb|CAY48095.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 353

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 154/342 (45%), Gaps = 5/342 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ +   S + +  F++ +    ++ F SWP+            +  A 
Sbjct: 2   LNNDRLLVQILLLVLFGASFWVMAPFWSALFWGAVLAFASWPLMVLLTRWLGGRESLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           I T+  M L  +PL++L +     +++  + +           P WL  IP         
Sbjct: 62  ILTLCWMLLVALPLVWLGFNLADHVRDATALIKDIQVDGLPAAPTWLGSIPFVGERLVAM 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  ++S         +++   +++ G   L+  LS++F+     FFYRDG  
Sbjct: 122 WDSIDQQGAALMVSIKPYLGQVGNWLLARSAQIGGGILELTLSLVFVF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  +  L E L          +V   ++    G+   A  + ++    + +AGVP  + 
Sbjct: 178 LAMFVHRLLERLIGDRAGYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T ++++IP G P+ +   + +L  KG+   A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGIVTFLLSLIPMGPPLVWIPATAWLAWKGDYTYAVFLGVWGTFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              LP +    G+ GG+   G +GLFIGP L+A+   +  + 
Sbjct: 298 GGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLMDW 339


>gi|227431381|ref|ZP_03913432.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227352844|gb|EEJ43019.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 369

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 116/336 (34%), Gaps = 10/336 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P++ A  + +   P+ +          +       +I  V  + +    L+ L
Sbjct: 40  FISTVFVPLIVAGFLYYVLKPVLTLLKKITVKGHKIPHQLAVIITFVLFLAVIAGSLILL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q+              + +  L   +LS        +    
Sbjct: 100 IPTLVAEITNLITALPEFAQNVQRFVT------DSLQSKWLSNLNLSIDIDEVKSAVGKY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +            +     ++++ + + LF+   DG  +   +  L    F    K
Sbjct: 154 SASFLTITAGTLGSAVSMVTSVTINVVTIPVVLFYMLSDGDRLLPAIQKLFPVRFADNVK 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  + K I     G  +  +  G+ +   Y + G P    LGVI  I  ++P   P  
Sbjct: 214 ELTLKMDKTIERYISGQALEMLFVGMTMAVGYLIIGEPYAWLLGVIAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      + +   +   +    + P ++G  +++  L     L+    
Sbjct: 274 GVIPALIVASTQSWKQMLLVMIVMMVVQQLDGNFIYPNVIGKSLQIHPLTIMILLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G+ G+ +   + A+   + K +I   +  KE + 
Sbjct: 334 LWGIFGMILIVPMYAVARTVVKFAIEMRQLTKESLE 369


>gi|153940198|ref|YP_001391112.1| hypothetical protein CLI_1854 [Clostridium botulinum F str.
           Langeland]
 gi|170754473|ref|YP_001781400.1| hypothetical protein CLD_2788 [Clostridium botulinum B1 str. Okra]
 gi|152936094|gb|ABS41592.1| putative membrane protein [Clostridium botulinum F str. Langeland]
 gi|169119685|gb|ACA43521.1| putative membrane protein [Clostridium botulinum B1 str. Okra]
 gi|295319158|gb|ADF99535.1| putative membrane protein [Clostridium botulinum F str. 230613]
          Length = 364

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 109/328 (33%), Gaps = 1/328 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I   +        P + A  I +   P+   F +K + +     ++  + V+ L  + + 
Sbjct: 32  IYSFIKSFLSILVPFIWAFGIAYMLNPLMKYFQNKFKLNRILSIILTYIIVIGLLTLFIN 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  + +L +         I                   ++  ++  +L     +
Sbjct: 92  TFVPKIIKNVGDLFAHSPDYINKTIQWFNENIKYSKAYDMLMENSQISNNIPNLINKI-S 150

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    I+       +F    + +   +I  I  L        +  + + +L      + 
Sbjct: 151 NLTNTFINTFLNTTIKFTSSLVKFVFGLIISIYLLLDKESLIENFKKFILALTGEKIYSK 210

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                + V  V     +G  I ++  GL+  +   +  VP    +  I  I  MIP   P
Sbjct: 211 TLSFFKEVDLVFSKFIIGKAIDSLIIGLMCFAGLNIMKVPYAALIAFIVGITNMIPYFGP 270

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +  + +  N   A  + ++  I        L P ++G  + L  +   F +  G
Sbjct: 271 FIGMIPAFVITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIG 330

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIM 347
             T G++G+F+   + A+I +   + I 
Sbjct: 331 GGTFGVMGMFLSVPIAAIIKIYLDKYIE 358


>gi|26990854|ref|NP_746279.1| hypothetical protein PP_4162 [Pseudomonas putida KT2440]
 gi|24985865|gb|AAN69743.1|AE016611_1 membrane protein, putative [Pseudomonas putida KT2440]
          Length = 350

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 158/352 (44%), Gaps = 5/352 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N + +++ +++ ++   L+ +  F + +L   I+ F SWP+            T  A +
Sbjct: 3   NNDRLLVQILLVALLGAGLWVMAPFISALLWGAILAFASWPLMRFLTRLLGGRETLAAGL 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWT 124
            T++ + +  +PL++L +     +++  + V           P WL  IP          
Sbjct: 63  LTMAWILIVALPLVWLGFNLADHIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNGW 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L    +  + S         +++   +++ G   L+  LS++F+     FFYRDG  +
Sbjct: 123 QSLDQKGAALLTSIKPYFGQVGNWLLARSAQIGSGVLELTLSLVFVF----FFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +  L   L     +    +V   ++    G+   A  + L+    + +AGVP  + L
Sbjct: 179 AAFVLRLLHRLVGERAEYYLDLVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T ++++IP G P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GLVTFMLSLIPMGPPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             LP +    G+ GG+   G +GLFIGP L+A+   +  +      +   + 
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVGYSLLLDWSRNAAQQPPQQ 350


>gi|90961351|ref|YP_535267.1| hypothetical protein LSL_0371 [Lactobacillus salivarius UCC118]
 gi|301301071|ref|ZP_07207231.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|90820545|gb|ABD99184.1| Hypothetical membrane spanning protein [Lactobacillus salivarius
           UCC118]
 gi|300851341|gb|EFK79065.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 376

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 120/345 (34%), Gaps = 6/345 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+      F    F PV+ +  + +   P+    +     K + + T    I  ++V  +
Sbjct: 29  FVFQPVAAFFSTLFIPVIISGFLYYMLLPLVKLLMKVKIGKFKINRTGAVAIVFIAVFAI 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + + FL    +++++ L++K            +    +     +S L    L    + 
Sbjct: 89  IAMSIAFLLPKIIVQVENLITKSPTYVSQLEKNFQHF--LKYDSRSSWLKDIDLQSYLNR 146

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S + +    +  +            +  ++++ +   LF+  +DG+ +   +     
Sbjct: 147 FEGSGSEMIAKFMKSLTNSLGSIISAITNITVTVLTVPFMLFYMLKDGYKLMPSILKFVP 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A  + + + +   +     G  I  I  G+     Y LAGVP  +  G+      +
Sbjct: 207 RKRTAQVEAMLQDMSNTLSKYISGQAIECIFVGICTAIGYGLAGVPYALLTGIFAGATNI 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      ++ L +  +   A    +   I   I    + P ++G  + +  L   
Sbjct: 267 IPYIGPYIGLVPALILSLTDSFNTAVMAIIVCIIVQQIDGNLIYPNVIGKSVDIHPLTII 326

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L+   +  GLLG+ +     A+I VI K     I    E    
Sbjct: 327 LLLLVAGKIAGLLGIILCIPFYAIIKVIVKHVREVIILENESSDE 371


>gi|172058669|ref|YP_001815129.1| hypothetical protein Exig_2664 [Exiguobacterium sibiricum 255-15]
 gi|171991190|gb|ACB62112.1| protein of unknown function UPF0118 [Exiguobacterium sibiricum
           255-15]
          Length = 385

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 107/327 (32%), Gaps = 2/327 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+       L+    P+  A I+ +   PI      K +       ++  + ++ +  
Sbjct: 29  VTFLFRPIAILLQMVVPPLAIAGILYYVLLPIVELLEKKMKRRP--AVILVLLGLVSILT 86

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                       ++ E V+ +             + D          +        +   
Sbjct: 87  ALGFIFGPMLSDQITEFVNSIPTLASQFQRQLIDVRDQLENSAFFSRFLSGQDDLFNKFS 146

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + +   +  +  I      F  +     ++I+ + I L +   DG  +   L  +    
Sbjct: 147 GNVSEYASTFLKNIGTGVGGFVSVITTTVVTIVIIPIMLIYMLLDGDKLKGNLVKMMPFE 206

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    KKI   V   I S   G  I++IG G++    Y + G+   + L +   +  +IP
Sbjct: 207 YHKETKKILHDVHLTIMSYIRGQVIVSIGVGIIAYIGYLIIGIDYALLLALFATLTNIIP 266

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ +    +   A    +   +   I    + P + G  + +  L     
Sbjct: 267 FLGPVIGVVPALIVGFIQDPILAVYAVIVMTVAQQIDSHIMSPLVQGKTLDVHPLTIIIV 326

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+      G  G+ +G    A++ V+ 
Sbjct: 327 LLVAGNIAGFFGVLLGVPFYAVMKVVI 353


>gi|169632703|ref|YP_001706439.1| PerM family permease [Acinetobacter baumannii SDF]
 gi|169795048|ref|YP_001712841.1| PerM family permease [Acinetobacter baumannii AYE]
 gi|184159168|ref|YP_001847507.1| permease [Acinetobacter baumannii ACICU]
 gi|213158290|ref|YP_002320341.1| permease [Acinetobacter baumannii AB0057]
 gi|215482597|ref|YP_002324789.1| hypothetical protein ABBFA_000876 [Acinetobacter baumannii
           AB307-0294]
 gi|239501015|ref|ZP_04660325.1| hypothetical protein AbauAB_01772 [Acinetobacter baumannii AB900]
 gi|260556531|ref|ZP_05828749.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|294836605|ref|ZP_06781288.1| hypothetical protein A60131_01655 [Acinetobacter sp. 6013113]
 gi|294840701|ref|ZP_06785384.1| hypothetical protein A6014_02507 [Acinetobacter sp. 6014059]
 gi|294860824|ref|ZP_06798593.1| hypothetical protein A6013_19681 [Acinetobacter sp. 6013150]
 gi|301347426|ref|ZP_07228167.1| hypothetical protein AbauAB0_14283 [Acinetobacter baumannii AB056]
 gi|301513661|ref|ZP_07238898.1| hypothetical protein AbauAB05_18835 [Acinetobacter baumannii AB058]
 gi|301596501|ref|ZP_07241509.1| hypothetical protein AbauAB059_11822 [Acinetobacter baumannii
           AB059]
 gi|169147975|emb|CAM85838.1| putative permease (PerM family) [Acinetobacter baumannii AYE]
 gi|169151495|emb|CAP00258.1| putative permease (PerM family) [Acinetobacter baumannii]
 gi|183210762|gb|ACC58160.1| predicted permease [Acinetobacter baumannii ACICU]
 gi|193078086|gb|ABO13021.2| putative permease (PerM family) [Acinetobacter baumannii ATCC
           17978]
 gi|213057450|gb|ACJ42352.1| permease [Acinetobacter baumannii AB0057]
 gi|213987714|gb|ACJ58013.1| conserved hypothetical protein [Acinetobacter baumannii AB307-0294]
 gi|260409790|gb|EEX03090.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|322509082|gb|ADX04536.1| Putative permease [Acinetobacter baumannii 1656-2]
 gi|323519112|gb|ADX93493.1| permease [Acinetobacter baumannii TCDC-AB0715]
          Length = 397

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 127/347 (36%), Gaps = 6/347 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + +++  LY LK    P + A  + +   P+    + K +        I  +
Sbjct: 7   RRIFLLAGIVLLVWVLYLLKPVVIPFIGAFFLAYLFSPLVEVLV-KIKIPRWLAISIVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     V L +L      ++      +             L  I       ++      
Sbjct: 66  GIGVTLTVALWYLVPLIWKQLVYARDSIPAGIHWINA--ELLPWISSTFHVQQMEIDTDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L
Sbjct: 124 MSKAVMDYVQTNYSADSIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A   +I R    V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEATTLQIVRECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +  +   + +   I   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVIASLFQFGMDWTHLLLVGVVFMIGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +   F ++ G +  G LG+ I   + A+I V+ K      + +
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLKHLRENYERS 350


>gi|170738761|ref|YP_001767416.1| hypothetical protein M446_0413 [Methylobacterium sp. 4-46]
 gi|168193035|gb|ACA14982.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 679

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 114/356 (32%), Gaps = 30/356 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I  +I+ +LYF +    P+  A+++ F  WP+ S  + +     T    ++ ++ + +
Sbjct: 33  LLIAALIVAALYFGREILIPIAIAVLLSFVLWPLVSL-LRRLRLGRTASIGLSVLTCLGV 91

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +  L +      ++ +L S +    +        L + P G  A  + +      Q+ 
Sbjct: 92  VGLLTLVIGL----QVADLGSNLPQYQRTIERKLENLREGPVGSIAGYMRSIGKHLQQAG 147

Query: 134 KILSETFLKTNGID-----------------------FIPRFASRFGMIFLDYCLSIIFM 170
            I  +     +                               A R     L    +   +
Sbjct: 148 SIPEDKAKPQDPTAPRPAPSVQNPDKPVLVEVRERELTPLELAERLLSPALAPLATTGIV 207

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            + L F       +  +L  L                 + +   FL    +  G G+ +G
Sbjct: 208 FVVLMFILGQREDLRDRLIRLAGSSDLHRTTVAMNDAARRLSRFFLVQLALNAGFGVAIG 267

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              W+ GVPS +  G+ TA+M  +P         + + L    +      L       + 
Sbjct: 268 IGLWIIGVPSPILWGIFTALMRFVPYVGAFLSALLPLLLAAAVDPGWHMVLATAALFLIL 327

Query: 291 --IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IV + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 328 EPIVGQVVEPLLYGHSTGLSPFAVLVSALFWTWLWGPVGLLLSTPLTVCLVVLGRH 383


>gi|309780687|ref|ZP_07675428.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308920369|gb|EFP66025.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 349

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/344 (19%), Positives = 133/344 (38%), Gaps = 3/344 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     ++  + L   + L  FF  V   +I+     P+  + +++  +     A+    
Sbjct: 8   QKFFFLLLFVVTLGLCWILSPFFGAVFWGVILAILFQPVQRALVARMGKRPNLAALATLT 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+P++F+    + E+     ++  A  +               W  +L  K   
Sbjct: 68  LIILIVILPVIFVTATIVQEIGVAYQQIQGAQPNYSRYLSEAVQALP-TWVQQLLAKAGL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +               F    A   G     + +    M+  +FF  RDG  I +++
Sbjct: 127 TNIAGIQKKLADGAAQISQFAATKALSIGQNTFQFVVGFGVMLYMVFFLLRDGTDIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     + + +      V+R+T  G   +A+ +G++ G  +W  G+   V  G + 
Sbjct: 187 RRALPMD-EEHKRLLLNKFTTVVRATVKGNIAVALVQGVLGGLIFWFLGIDGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +  V++Y L+ G I+    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWIPVALYFLMVGAIWKCVILVAFCGGVIGLVDNLLRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P        +GG+   G+ G  IGP++ AL    W        E
Sbjct: 306 PDWVVLISTLGGMELFGITGFVIGPLVAALFMASWDIFAREQSE 349


>gi|295397118|ref|ZP_06807227.1| possible permease [Aerococcus viridans ATCC 11563]
 gi|294974643|gb|EFG50361.1| possible permease [Aerococcus viridans ATCC 11563]
          Length = 353

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 134/355 (37%), Gaps = 12/355 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+  M   + +    ++ + +V + +    L+    P + AL++ +   P       K +
Sbjct: 1   MKIVMPEKKKLFDIGLVLLGIVIIAYIYNPLRNIINPFIYALVLAYLLNPAVKLLE-KNK 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            +  +  +I  V +  LF +    L      +++  + ++         + +++  I G 
Sbjct: 60  VNRIWAILIVFVLLFFLFSIAFATLIPRLTGDLRVFIDEIP-------NILKFIEKIVGE 112

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           + + ++        + L +  +       +    R      + +    L II   I  F+
Sbjct: 113 LQSGQIPFIPEGVQEFLNLDEQIKNIGEVLRNSLRGVFNRFVSYTGTFLDIIITPIITFY 172

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           + +D   I + +         A  K++   V KV+     G   +A   G++ G   W+ 
Sbjct: 173 YLKDKDRIMKAITGEIPVKRLAKAKELGGEVDKVLGGFIKGQLTVAGFVGILTGMGCWII 232

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP  + +G++  I  +IP   P     + + L    +   A  + +   +   +    L
Sbjct: 233 GVPYSLTIGLVAGITNIIPYFGPWIGGVLPVILAFMESPIMALWVTMLIVVIQQVESAFL 292

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            P ++   + L  L   F ++     +G+LG+ IG  LM L+ +  +       E
Sbjct: 293 SPQIMSHSVGLHPLLVIFSVLFFGNMLGILGMIIGVPLMGLLKIALRYLKEFRSE 347


>gi|192292201|ref|YP_001992806.1| hypothetical protein Rpal_3832 [Rhodopseudomonas palustris TIE-1]
 gi|192285950|gb|ACF02331.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 372

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 106/351 (30%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    I  ++++ L+ L+       +A +I        +    +   S     +I  +
Sbjct: 34  RTLRVSAIALVLMIVLWVLRDILLLGFAAALIACVLRGAANVLHRRTGLSDGLSLLIVVM 93

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++      L +       E+ ++  ++    Q                          S
Sbjct: 94  TIVLALGALLFWRGTAIANEVAQMYDQLTAQMQSL------------------WQQMSGS 135

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L       L  +    +  +        L    S++ ++    F      S     
Sbjct: 136 GWPALLAKQLRNLSESARKNLTGYVPGVASSVLGIGGSVVVVLATALFLAISPRSYMDGA 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +    + +       ++  FLG     +   L++G   +L GVP    L ++ 
Sbjct: 196 LRLLPVQWRPRGRHVMLETGSTLQLWFLGQLADMLIVALLIGVGLYLLGVPMAPTLALLA 255

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++  +P    ++    ++ + +  +   A  + L       +    + P +    + L 
Sbjct: 256 GLLNFVPYVGALAGAVPAVLVALAQSPSLALWVALLFICVQTLEGNVVAPLIQRRTVSLL 315

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              T           G++GL I   L A +    +   +     ++  + +
Sbjct: 316 PALTILSQTILGTLFGVVGLVIATPLTAALMTAVRMIYIEDLLERDCGAED 366


>gi|172040204|ref|YP_001799918.1| hypothetical protein cur_0524 [Corynebacterium urealyticum DSM
           7109]
 gi|171851508|emb|CAQ04484.1| hypothetical protein cu0524 [Corynebacterium urealyticum DSM 7109]
          Length = 421

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 104/318 (32%), Gaps = 13/318 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L    AP+  A++      P+ +    K     +  +++  + ++ L    +       +
Sbjct: 50  LAVVVAPLAIAVLFSAMLTPVVNFLDVKLRLPRSLASLLTVLGLIGLISAGITLFTTQLI 109

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  +           +                    K      S  +       +   
Sbjct: 110 SGVPAMRDSARQGVNQIVDWLE------------NGPFKLTQAKLSEMVSHVQGALSENS 157

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I   A R G   ++   +++  +I LFFF  +G  I   L SL          +  R 
Sbjct: 158 KTIADGAVRTGTTAVNSGAALLIFLITLFFFLYEGRRIWLWLVSLAPQASQVPMDEAFRR 217

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAV 265
               + +      ++A    + +G   W+  VP  + + V+  I + +P     IS    
Sbjct: 218 GWVSLGTFAHVQVLVAALNAVSVGIGCWVMKVPFAIPISVLVFIASFVPIVGALISGAVP 277

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++  L+   +F A  + +       I    L+PFL+G  + L  L     +  G    GL
Sbjct: 278 ALIGLVDQGVFTAIVMVIIVTAVHQIETHVLQPFLMGHAVALHPLAVIVVVAAGTYLFGL 337

Query: 326 LGLFIGPVLMALIAVIWK 343
            G      + AL+  + +
Sbjct: 338 AGAVFAVPVAALVNSVVR 355


>gi|86148147|ref|ZP_01066446.1| putative permease [Vibrio sp. MED222]
 gi|218710464|ref|YP_002418085.1| putative permease [Vibrio splendidus LGP32]
 gi|85834064|gb|EAQ52223.1| putative permease [Vibrio sp. MED222]
 gi|218323483|emb|CAV19660.1| putative permease [Vibrio splendidus LGP32]
          Length = 361

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 131/334 (39%), Gaps = 2/334 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+     K       +++++ V +  + ++PLL +F   +
Sbjct: 29  IEPYVNSIVMAFIISLLMFPIHEWLEKKIPNKENVVSLLSCVILTFIIVIPLLAVFAAIV 88

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +             HG I        +   +     +    +              T+ 
Sbjct: 89  QQGSLFSQNTYQWVTHGGIQTLFAHPLVVKALSFVNNYLPFDNIEPQAIAQKVGEFATSF 148

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +++      ++ +    M+  LFF  RD   I   +  +   L  +   K+  
Sbjct: 149 GSKLVGISAKILGDATNFLMDFFLMLFVLFFLLRDHDKIISVVRHILP-LSRSQEDKLLT 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +V +S  +G  + AI +G   G   W+AG P      ++     +   G  + +   
Sbjct: 208 EIEQVSKSAVMGSFLTAIAQGFAGGLGMWIAGFPGLFWGTMMGFASFIPVVGTALIWIPA 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + YL + G+   A  L ++    +  +D  LRP L+ G   +  L  FF L+GG++  GL
Sbjct: 268 ATYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGIQLFGL 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GL  GP++ A+  V++       K+   +   +
Sbjct: 328 IGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDKS 361


>gi|330470380|ref|YP_004408123.1| hypothetical protein VAB18032_02195 [Verrucosispora maris
           AB-18-032]
 gi|328813351|gb|AEB47523.1| hypothetical protein VAB18032_02195 [Verrucosispora maris
           AB-18-032]
          Length = 433

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 104/349 (29%), Gaps = 18/349 (5%)

Query: 12  MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++ ++  +L      +     P+  A+++     P     +  +    +    +  
Sbjct: 88  WRLIVVGVVFWALVKLVSTISIVIIPLAVAMLLSALLAPAVGWLLRAR-LPKSLATAVVL 146

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V+ +   +  L  +    +  + EL +K     Q      +                +  
Sbjct: 147 VAGLAAVVGTLTLVVNEFIKGVPELAAKSSQGLQQIQDWLKTGPLHLSDNDLDRYLEEAQ 206

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           N  +     A        +     I ++ A FFF RDG  I + 
Sbjct: 207 QW------------VNNNTEQFTSGALSTATTLAEVLTGTILVLFAAFFFLRDGNMIWRF 254

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L             R     + +      ++A  + + +G    +  +P    L  +
Sbjct: 255 VVRLLPVAARWKVDDAGRASWATLVAYVRATVLVAFIDAVGIGIFLVIFDIPFAFPLAAL 314

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP     +S     +  L+      A  +         +    L+P ++G  + 
Sbjct: 315 VFLGAFIPIIGATLSGGVAVLVALVDSGPVTALIILGVVIGVQQVEGHILQPLIMGRAVA 374

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  L    GL  GV   G+ G  +   L+A++    +        +   
Sbjct: 375 IHPLAVIIGLAAGVVLAGITGALVAVPLIAVLNTAVRRLAARTVPDTPP 423


>gi|70729140|ref|YP_258876.1| hypothetical protein PFL_1750 [Pseudomonas fluorescens Pf-5]
 gi|68343439|gb|AAY91045.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 350

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 155/351 (44%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N + +++ +++ +   S + +  F++ +    ++ F SWP+            +  A +
Sbjct: 3   NNDRLLVQILLLVLFGASFWVMAPFWSALFWGAVLAFASWPLMRLLTRWLNGRESLAAAL 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWT 124
            T+  M L   PL++L       +++  + +           P WL ++P          
Sbjct: 63  LTLGWMVLVAAPLVWLGLNLADHVRDATAFIKDVQVDGLPAAPEWLGNLPLVGERLVGLW 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +  +L+         +++   +++ G   L+  LSI+F+     FFYRDG  +
Sbjct: 123 NSIDQQGAALMLAVKPYLGQVGNWLLARSAQIGGGILELTLSIVFVF----FFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +  L E L          +V   ++    G+   A  +GL+    + +AGVP  + L
Sbjct: 179 ALFVHKLLERLIGERAGYYIDLVAGTVQRVVNGVIGTAAAQGLLALIGFLIAGVPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T ++++IP G P+ +   + +L  KG    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GIVTFLLSLIPMGPPLVWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             LP +    G+ GG+   G +GLFIGP L+A+   +  +   +    +E 
Sbjct: 299 GNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLLDWSASQARAQEP 349


>gi|254253952|ref|ZP_04947269.1| hypothetical protein BDAG_03238 [Burkholderia dolosa AUO158]
 gi|124898597|gb|EAY70440.1| hypothetical protein BDAG_03238 [Burkholderia dolosa AUO158]
          Length = 356

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 163/344 (47%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLA 63
              Q     +    +L++L+ ++ F   +  A +I    WP+   F S     +  T +A
Sbjct: 16  RAQQIARAMLYTAFLLLALWVIRDFIPAIAWACVISIAMWPLLERFESHPLFRDRPTLIA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T  +  L I+P+   F   + +  ++   +     +GIP+P  +  +P G      W
Sbjct: 76  TVITTGISLLVILPVAAGFTEAVAQAHDVRMWLHTIQDNGIPLPDVVGRLPYGAAQITEW 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + T +     +    F  +FG       L   FM++ LF   R G  
Sbjct: 136 WQANLGHP---LHAATAMHGVNGEKFIAFGRQFGTKLAHALLEFGFMLVTLFVILRAGHK 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F A   ++   +   +  T  G+ ++ +GEG +LG AY  AGVP    
Sbjct: 193 LSGALLHGARRAFGASGAELIDRMVDAVYGTVTGLVVVGLGEGALLGVAYAFAGVPHAAL 252

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++TA+ AM+P  API F   +++L + G   +A  +  +G + +F+ +  +RP L+GG
Sbjct: 253 LGLVTAVAAMLPFCAPIVFCGAALWLFVHGATVSAVGVAAFGFVVVFVAEHFVRPVLIGG 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E + 
Sbjct: 313 STRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|16802627|ref|NP_464112.1| hypothetical protein lmo0584 [Listeria monocytogenes EGD-e]
 gi|47096877|ref|ZP_00234456.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|224498663|ref|ZP_03667012.1| hypothetical protein LmonF1_02766 [Listeria monocytogenes Finland
           1988]
 gi|224502115|ref|ZP_03670422.1| hypothetical protein LmonFR_06292 [Listeria monocytogenes FSL
           R2-561]
 gi|254828349|ref|ZP_05233036.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254900183|ref|ZP_05260107.1| hypothetical protein LmonJ_10230 [Listeria monocytogenes J0161]
 gi|254911263|ref|ZP_05261275.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935591|ref|ZP_05267288.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284800864|ref|YP_003412729.1| hypothetical protein LM5578_0612 [Listeria monocytogenes 08-5578]
 gi|284994050|ref|YP_003415818.1| hypothetical protein LM5923_0611 [Listeria monocytogenes 08-5923]
 gi|16409960|emb|CAC98663.1| lmo0584 [Listeria monocytogenes EGD-e]
 gi|47014742|gb|EAL05696.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258600742|gb|EEW14067.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258608171|gb|EEW20779.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284056426|gb|ADB67367.1| hypothetical protein LM5578_0612 [Listeria monocytogenes 08-5578]
 gi|284059517|gb|ADB70456.1| hypothetical protein LM5923_0611 [Listeria monocytogenes 08-5923]
 gi|293589194|gb|EFF97528.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 390

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +    ++S          T +  + I  I         + L    + 
Sbjct: 128 DEFSRSSLFDQLKDKLNTNMSDIMKTLSTKGTSVINSAISSIGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|108762102|ref|YP_633773.1| hypothetical protein MXAN_5634 [Myxococcus xanthus DK 1622]
 gi|108465982|gb|ABF91167.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 424

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 98/355 (27%), Gaps = 28/355 (7%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +    P   A +I +   P+           +        ++          + ++ L 
Sbjct: 51  FRSVVMPFAGAALIAYLVQPLVGRISRVKVAGRPVPRWTALLLIYAGFFVGVYLFIVALV 110

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-------------------- 122
                E+  +  + V       P            W S                      
Sbjct: 111 PQLYRELSRVSREAVTFANTLTPEHVQELAQRAETWLSTRGIPVALSNRALEGADAGSSN 170

Query: 123 ----WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               +   L       +   + L    +  I   +             + F+++   FF 
Sbjct: 171 GTFGFALDLEQFLGDAVKRVSILVQENLGDIVNVSRSIVTSVAAGVFMLFFVLMVAAFFS 230

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +I +   +L    +    +++   + + +     G   I I  G++      L GV
Sbjct: 231 IDAHAIRRYFGTLIPPEYAIDARQLLERIDRSLSGVVRGQVTICIVNGILTFMGLLLFGV 290

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                L  I    ++IP    I  +   + + +         +  W      +    L P
Sbjct: 291 KFAFLLATIATFFSLIPIFGTILSSVPIVLIALADGFQKGLAILAWIIGIHAVEAYFLNP 350

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G    L  +   F L+ G R  GL+G      + +++   +  + +  +   
Sbjct: 351 KIMGQAAHLHPVIVAFSLIAGERLFGLVGALFAVPVASVLVACFDYARLKAQPAP 405


>gi|71064848|ref|YP_263575.1| hypothetical protein Psyc_0271 [Psychrobacter arcticus 273-4]
 gi|71037833|gb|AAZ18141.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
          Length = 379

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 159/357 (44%), Gaps = 3/357 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  +  + +   +++ + ++    ++ F  P L   I+ + ++PIY+ F  +   SS F 
Sbjct: 7   KEFIIQRLLAITLLVVLFVLCFQVVRFFIVPALWGAILAYVTFPIYNFFHQRVRFSSNFS 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A I TVS+  +  VPL+   +    E   L+S +             + D    +     
Sbjct: 67  ATIMTVSITLMIGVPLVAGIFILQQEALSLISNL---VYRIKAGYLDVPDSVKDLPVIGQ 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K +    +             +     +      +       +   ++ LFFFYRDG 
Sbjct: 124 QVKDVLWRVNKNPAGTLETFRLWVQSHLYYGKIAFDVVFSSLAKLGMALMTLFFFYRDGT 183

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+ +Q+     ++           V    R+   G+ + A+ + L+ G  Y+ A  PS +
Sbjct: 184 SLVRQIRQALRNIIGNRIDGYIDSVGTTTRAVVYGIGLTALAQALLAGIGYYFASAPSPI 243

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + ++T I+A+IP G P  + ++S++LL +G+      L LWG + +  VD  +RP ++ 
Sbjct: 244 LMTILTFIIALIPFGTPFVWGSISLFLLSQGHTVEGIGLALWGILVISWVDNLIRPIVIS 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G  K+PF+  F G++GG+   G +GLFIGPV++A+   +W+E I   K         
Sbjct: 304 GATKIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIGLAVWREWISQHKNELFAQQEE 360


>gi|37680691|ref|NP_935300.1| permease [Vibrio vulnificus YJ016]
 gi|320155639|ref|YP_004188018.1| putative permease PerM ( YfgO) [Vibrio vulnificus MO6-24/O]
 gi|37199440|dbj|BAC95271.1| predicted permease [Vibrio vulnificus YJ016]
 gi|319930951|gb|ADV85815.1| putative permease PerM (YfgO) [Vibrio vulnificus MO6-24/O]
          Length = 356

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    V++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFVTIYFFGHLLAPLLVAIVLAYLLEWPVAQL-RRFGVPRTV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +  + L ++ L  L      ++  L++ +             L +    +   +
Sbjct: 69  GVIAVILLFIGLMLIALFGLIPTIWTQVGNLINDIPNMYNGLQQFIASLPERYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVEAIVTNAKNKVLGMGESVVKGSLASLISIAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    L          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMMRMASGLLP-KNRNLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGISTEFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +WK      +   + 
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSQDEHEAQP 355


>gi|315281204|ref|ZP_07869881.1| YubA [Listeria marthii FSL S4-120]
 gi|313615146|gb|EFR88614.1| YubA [Listeria marthii FSL S4-120]
          Length = 389

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +    ++S          T +  + I  I         + L    + 
Sbjct: 128 DEFSRSSLFDQIKDKLNTNMSDIMKTVSTKGTSVINSAISSIGSIVGTVTEVILAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGILGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|188584250|ref|YP_001927695.1| hypothetical protein Mpop_5064 [Methylobacterium populi BJ001]
 gi|179347748|gb|ACB83160.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 359

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 100/328 (30%), Positives = 163/328 (49%), Gaps = 5/328 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLFLF 82
           Y L GF   ++ AL++    WP+++    +            + T  V  L ++P+  L 
Sbjct: 32  YILHGFLRALVWALVLAIALWPLFNRARRRFPPGRHNILWPAVFTGLVAGLLLLPIAGLA 91

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E  +L++    A ++GIPVP +++ +P G  A   W         L       L 
Sbjct: 92  VEAGREAHDLLAYAREAERNGIPVPDFVAHLPYGAAAVTEWWNAHLAHAGLAHEVTERLN 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T     + R     G   +   +   F ++ALFF +R+G ++  Q     + LF    ++
Sbjct: 152 TTSNRDLTRTL---GAGLVHRVVLFGFCLLALFFLFREGDAVVAQSLRASQRLFGPRGER 208

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++R +   +  T  G+ ++ IGEG +LG  Y LAGVP  V  G +TA+ AMIP GAP++F
Sbjct: 209 VARQMVASVHGTVDGLVLVGIGEGFLLGIVYALAGVPHPVLFGALTAVAAMIPFGAPLAF 268

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ LL  G +  A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV T
Sbjct: 269 GLAAVLLLAGGAVVPAAIVVAAGFVITFVADHFVRPALIGGTTRLPFLWVLLGILGGVET 328

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            GLLGLF+GP +MA + ++W+E     +
Sbjct: 329 FGLLGLFVGPAVMAALILLWRELTEGPE 356


>gi|78048658|ref|YP_364833.1| putative permease (PerM) family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926062|ref|ZP_08187425.1| putative permease [Xanthomonas perforans 91-118]
 gi|78037088|emb|CAJ24833.1| putative permease (PerM) family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543520|gb|EGD14940.1| putative permease [Xanthomonas perforans 91-118]
          Length = 388

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 124/349 (35%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S     ++  V
Sbjct: 14  RRLKWAAVIVGVLWVVSLLAPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNVAVMLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LF++ L+ L      ++  L+  +       I                +L      
Sbjct: 73  LATLLFVLALMILVPMIERQIMTLIDALPQMRNWAIGTA---IPWLEAKTGMQLMAWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S           +  + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     ++++    V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTVSRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE----LFIVDKTLRPFLVGGP 304
            +++ IP     +   +++   I         L +   +       +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGIVLALLAAIVQAQGLDLKLLVGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +      + 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHEQYTRSD 358


>gi|325916437|ref|ZP_08178709.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325537357|gb|EGD09081.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 389

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 122/349 (34%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S      +  V
Sbjct: 14  RRLKWTAVIVGVLWVVSLLAPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNMAVSLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LF++ L+ L      ++  L+  +       I                EL      
Sbjct: 73  LATLLFVLALMILVPMIERQIMTLIDALPQMRAWAISTA---IPWLEAKTGVELMGWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S              + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGAAKTFFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     +++     V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTVSRLALESNDVLGGFIRGQFLVMLALGAIYATGLSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GFISFIPYLGATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +      + 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHEQYTRSD 358


>gi|16799668|ref|NP_469936.1| hypothetical protein lin0593 [Listeria innocua Clip11262]
 gi|16413033|emb|CAC95825.1| lin0593 [Listeria innocua Clip11262]
 gi|313620258|gb|EFR91707.1| YubA [Listeria innocua FSL S4-378]
 gi|313624816|gb|EFR94748.1| YubA [Listeria innocua FSL J1-023]
          Length = 389

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 128/364 (35%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 K +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKK-KWKRGWAIALLYLVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +  + ++S          T +  + I  I         + L    + 
Sbjct: 128 DEFSRSSLFDQIKDKLSTNMSDIMKTLSTKGTSVINSAITSIGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ V+     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGILGVIFAVPGYAVLKVVVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|161520866|ref|YP_001584293.1| hypothetical protein Bmul_4321 [Burkholderia multivorans ATCC
           17616]
 gi|160344916|gb|ABX18001.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
          Length = 380

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 59  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAMAL 118

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +++  +L         +GIP+P  ++ +P G      W +         + + T + 
Sbjct: 119 TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP---LHAATAMH 175

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               + +  F  +FG           FM++ LF   R G  ++ +L    +  F      
Sbjct: 176 GASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGAH 235

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ F
Sbjct: 236 LIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLVF 295

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 296 CGAALWLFVQGATVWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAET 355

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            GL+GLF+GP LM ++ V+W E 
Sbjct: 356 FGLIGLFVGPALMTVLTVLWAEW 378


>gi|256785494|ref|ZP_05523925.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289769390|ref|ZP_06528768.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289699589|gb|EFD67018.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 466

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 92/321 (28%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +           ++AL+I     P  +    +          +  
Sbjct: 92  WRLLVLAGTVWVLMRVISAVQLVVLAFVAALLITALLQPAVAWL-RRHGVPRGPATALTA 150

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +   F+ +  M  +  L  +V                     W         
Sbjct: 151 ILGFVVMGLIGWFVTWQVMENIDNLSDQVQDGIDELRN------------WLLNSPFHVT 198

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         D I         + ++    I+    +  F   DG  I Q 
Sbjct: 199 DKQINEIAKNLRDAVGANTDQITSAGLEGVTVVVEALTGILLAAFSTLFLLYDGKRIWQW 258

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  I+A+ + + +G   +   VP  V L V 
Sbjct: 259 SLKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVF 318

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   +F A    +       I    L+PF++G  ++
Sbjct: 319 IFLFAFIPLVGAVVSGALAVVVALVTQGVFAAVMTLVVVLAVQQIEGHILQPFILGRAVR 378

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 379 VHPLAVVLSVAAGGMVAGIGG 399


>gi|70731784|ref|YP_261526.1| permease [Pseudomonas fluorescens Pf-5]
 gi|68346083|gb|AAY93689.1| permease, putative [Pseudomonas fluorescens Pf-5]
          Length = 357

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 123/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +   ++ +    +Y L    +P L AL++ +   P+          S T+  V
Sbjct: 1   MADTRRWVWLGVVLLACGFVYLLHPILSPFLVALLLAYLFDPLVDRLEQW-GLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   + +  LL L      ++  L               +  +             
Sbjct: 60  AVFALFTLIVMTLLLVLVPMLAKQLVRLYELAPQML----DWVQHSAMPWVQSKLGLADG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I       T+ +  +   A+  G+  + +  +++ + +  F+  RD   +
Sbjct: 116 FWKFDKVKAAISEHMGQTTDIVGVVLSQATASGLALIGWLANLVLIPVVSFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++ SL           ++    +V+ +   G  ++ +  G++  +   L G+   + +
Sbjct: 176 MAKIRSLLPRSREEQVVSLAGECHEVLGAFVRGQLLVMLALGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G+I  + A++P    +     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GLIAGLAAIVPYMGFVIGIGAALIAGLFQFGGDLYPMIGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K++ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLVRHVHDLYKDSD 347


>gi|148979051|ref|ZP_01815296.1| putative permease [Vibrionales bacterium SWAT-3]
 gi|145962024|gb|EDK27312.1| putative permease [Vibrionales bacterium SWAT-3]
          Length = 361

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/334 (18%), Positives = 133/334 (39%), Gaps = 2/334 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+     K    +  +++++ V +  + ++PLL +F   +
Sbjct: 29  IEPYVNSIVMAFIISLLMFPIHEWLEKKIPNKANLVSLLSCVILTFIIVIPLLAVFAAIV 88

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +             HG I        +   +     +    +              T+ 
Sbjct: 89  QQGSLFSQNTYQWVTHGGIQTLFEHPIVVKALSFVNNYLPFDNIEPKAIAQKVGEFATSF 148

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +++      ++ +    M+  LFF  RD   I   +  +   L  +   K+  
Sbjct: 149 GSKLVGISAKILGDATNFLMDFFLMLFVLFFLLRDHDKIISVVRHILP-LSRSQEDKLLA 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +V +S  +G  + AI +G+  G   W+AG P      ++     +   G  + +   
Sbjct: 208 EIEQVSKSAVMGSFLTAIAQGIAGGFGMWIAGFPGLFWGTMMGFASFIPVVGTALIWIPA 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + YL + G+   A  L ++    +  +D  LRP L+ G   +  L  FF L+GG++  GL
Sbjct: 268 AAYLFLTGDTTWAIFLTVYCVAIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGIQLFGL 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GL  GP++ A+  V++       K+   +   +
Sbjct: 328 IGLIYGPLIFAITIVLFNIYDEEFKDFLNQQDKS 361


>gi|308235343|ref|ZP_07666080.1| hypothetical protein GvagA14_03796 [Gardnerella vaginalis ATCC
           14018]
          Length = 530

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 113/348 (32%), Gaps = 19/348 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      + +M  +I   + + ++F  G        V+ ++ I     P+    I     
Sbjct: 34  RPPDWLSRALMYAVIAAFVAIFVWFAWGNIAFIVFDVVVSIFIALAIEPLVVRLIKH-GW 92

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S  F ++ +   ++ + I+ L+      + +   +V  +                     
Sbjct: 93  SRAFASLASLFGLLVIVILLLVLFGNLFVQQAVSMVLGLPDLYNQFAHF----------- 141

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    + + + L +     ++T+ +      A       L   L ++ +++  ++ 
Sbjct: 142 -VLNSTGFKMPNIEQLGMEILKHVQTSWVVDFAGQAINTTWGLLAVLLDLLTILMVTYYI 200

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G S+ + +  L        +  I  +V + I S     TI+A               
Sbjct: 201 SAAGPSMRRSVCRLLNPKSQRRFLFIWSVVQEQISSFLFSRTILAAINATGTAIFLIFMN 260

Query: 238 VPSHVALGVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           VP  + L +   I++  +P     +      ++        +A  + ++  I   I +  
Sbjct: 261 VPYWLPLSLFCGIVSQFVPTIGTYLGGALPILFAWGSNGFGSAIAVLIFVTIYQQIENMV 320

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + P +    + L     F  ++      G LG F+   + A +  I K
Sbjct: 321 ISPKISEKTMDLNPAVAFLSVLIMGAVFGALGAFLALPVTASLQAILK 368


>gi|329766855|ref|ZP_08258383.1| hypothetical protein HMPREF0428_00080 [Gemella haemolysans M341]
 gi|328837580|gb|EGF87205.1| hypothetical protein HMPREF0428_00080 [Gemella haemolysans M341]
          Length = 382

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 124/320 (38%), Gaps = 11/320 (3%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
            A +  +   P+ + F  K   S    +++A +  +   ++ ++ +    + + + L++ 
Sbjct: 71  VAYVFYYMLNPLVNFFSKK--ISRFSASLLAILVGIITILIVIIGVVPIIVEQTQNLITA 128

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +    +         SD        E    +L+          + +    I  +   A  
Sbjct: 129 MPRYIEIVKGYLEEYSDNAYVQVVVEYVNTNLNA---------SKISARLITIVTSVAQG 179

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                      ++ M   LFF  +D    ++ + SL          +    + + + S  
Sbjct: 180 IVSSISSTASVLVTMPFVLFFLLKDASKFNKFVISLLPKKLEKPVAETIDEIDEKVGSYI 239

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
            G  ++++  G++L   Y + G+    +L  I A ++++P   P+     ++ +    + 
Sbjct: 240 QGQMLVSLCIGVMLFIGYNVIGLHYAFSLATIAAFLSIVPYLGPVIAITPAMLVAASTSW 299

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                + +   +  F+    + P ++G  + +  L   F ++ GV   G++G  +G  + 
Sbjct: 300 VMVVKMLVVWGVVQFLEGNIISPNIMGRSMNMHPLTVIFVILIGVNISGVVGAILGIPVY 359

Query: 336 ALIAVIWKESIMAIKENKEK 355
           +++ V+  + ++++K+  +K
Sbjct: 360 SILKVLISKLLISLKDRYDK 379


>gi|46906829|ref|YP_013218.1| hypothetical protein LMOf2365_0613 [Listeria monocytogenes str. 4b
           F2365]
 gi|47093325|ref|ZP_00231094.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|226223213|ref|YP_002757320.1| hypothetical protein Lm4b_00610 [Listeria monocytogenes Clip81459]
 gi|254824143|ref|ZP_05229144.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254853217|ref|ZP_05242565.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932141|ref|ZP_05265500.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254991724|ref|ZP_05273914.1| hypothetical protein LmonocytoFSL_00397 [Listeria monocytogenes FSL
           J2-064]
 gi|255520994|ref|ZP_05388231.1| hypothetical protein LmonocFSL_07186 [Listeria monocytogenes FSL
           J1-175]
 gi|300765351|ref|ZP_07075334.1| hypothetical protein LMHG_10257 [Listeria monocytogenes FSL N1-017]
 gi|46880095|gb|AAT03395.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47018294|gb|EAL09058.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|225875675|emb|CAS04378.1| Conserved hypothetical membrane protein [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258606571|gb|EEW19179.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293583697|gb|EFF95729.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593375|gb|EFG01136.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513912|gb|EFK40976.1| hypothetical protein LMHG_10257 [Listeria monocytogenes FSL N1-017]
 gi|328467412|gb|EGF38488.1| hypothetical protein LM1816_09972 [Listeria monocytogenes 1816]
 gi|328475871|gb|EGF46607.1| hypothetical protein LM220_07432 [Listeria monocytogenes 220]
          Length = 390

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +    ++S          T +  + I  I         + L    + 
Sbjct: 128 DEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTSVINSAISSIGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|77457862|ref|YP_347367.1| hypothetical protein Pfl01_1635 [Pseudomonas fluorescens Pf0-1]
 gi|77381865|gb|ABA73378.1| putative transmembrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 357

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 121/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + ++   ++ L     P L AL++ +   P+      +   S T+  +
Sbjct: 1   MADTRRWFWLGGVLLLCAFVWLLHPILTPFLVALLLAYLFDPLVDRLE-RLGLSRTWGVI 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   +    LL L      ++  L                  +    G+       
Sbjct: 60  TVFALFTLIVTALLLVLVPMLAKQLLRLYELAPQMLDWLQHTAVPWAQSKLGLSDGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I       T+ +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 ----DKVKAAISEHMGQTTDIVGVVLSQATASSLALIGWLANLVLIPVVSFYLLRDWDVM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++  L           ++    +V+ +   G  ++ +  G++  +   + G+   + +
Sbjct: 176 MARIRGLLPRDREERVVALAGECHEVLGAFVRGQLLVMLALGVIYAAGLMIVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G+I  + A++P    +     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GLIAGLAAIVPYMGFVIGIGAALIAGLFQFGGDLYPMIGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLVRHVHDLYKDSE 347


>gi|91974818|ref|YP_567477.1| hypothetical protein RPD_0338 [Rhodopseudomonas palustris BisB5]
 gi|91681274|gb|ABE37576.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB5]
          Length = 365

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/346 (20%), Positives = 145/346 (41%), Gaps = 3/346 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +       +++   +   + L   ++ VL  ++I     P+Y              A+  
Sbjct: 4   SENRFFILLLLVASIGFGWILLPLYSAVLWGVVIAILFAPLYRQLNRAFGFRRNLAALTT 63

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              ++ + I+P+  +      E + +  ++   N   +   + +   P   W S +  + 
Sbjct: 64  VAIIVTMVILPISLIGAALAQEARAMFLRIESGNLDMLQYLKQVLAEPPA-WISGVLERF 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                S      + +   G  ++   A   G   ++  +++  M+  LFF  RDG  ++ 
Sbjct: 123 SIGNLSDLQERLSAVLMRGSQYLAGQAIGIGQGTVEIVINLGVMVYLLFFLLRDGDLLAA 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++      L      ++ R    VIR+T  G  +IA+ +G + G  +++ GV   +  GV
Sbjct: 183 RIRRAVP-LSVEQESQLLRKFTVVIRATVKGNMLIALIQGALGGVMFYILGVNGALLWGV 241

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A ++++P     + +  V++YLL  G+I+    L  +G + +  VD  LRP LVG   
Sbjct: 242 VMAFLSLLPAVGAGLVWLPVALYLLGTGSIWQGVALIAFGTMVIGTVDNVLRPVLVGKDT 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++P        +GG++  GL G  IGPV+ A+    W     + + 
Sbjct: 302 RMPDYVVLISTLGGIQVFGLNGFVIGPVIAAIFIAAWDIYSASREA 347


>gi|77411721|ref|ZP_00788059.1| membrane protein, putative [Streptococcus agalactiae CJB111]
 gi|77162229|gb|EAO73202.1| membrane protein, putative [Streptococcus agalactiae CJB111]
          Length = 396

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 119/361 (32%), Gaps = 18/361 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++  MI F++ ++++              FL     P++ + ++ +   P+ + 
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         +     ++ L I  +         +++  +  +              
Sbjct: 78  LEKR-GIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D    + +   +   +S   S                +  +A           ++ I  
Sbjct: 137 IDHNPWLKS---YKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVTVATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD   +      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRKMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373

Query: 351 E 351
            
Sbjct: 374 A 374


>gi|226946440|ref|YP_002801513.1| hypothetical protein Avin_44170 [Azotobacter vinelandii DJ]
 gi|226721367|gb|ACO80538.1| Conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 368

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 135/338 (39%), Gaps = 3/338 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   ++  + +      + F   +L ++I+    +P+     ++        A +  V  
Sbjct: 20  IRAGLVAVLTIYCYLVFRPFLELMLWSMILAVMLYPLQRRLAARLGHHEGRTASLIVVVG 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +VP+  L    +   ++++  V   + H  P    +++ P        + +  +  
Sbjct: 80  LLILMVPIYLLGTSLVDSAQQVMETVRSGSLHIPPPSESVANWPVIGQPVHDFWQQAASD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S  I          +  +    +  G  FL +  ++I   I + F      S  +    
Sbjct: 140 LSGSIEKYRPQLRELLLGLLGKIAGIGTGFLLFIAALIIAGIIMAFGELGHRSAHRIAVR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P   + +  +    IR+   G+  IA  + L++G  + L GVP    L +   +
Sbjct: 200 IVG---PERGELLVELCTATIRTVAQGVLGIAFIQMLLVGVGFVLMGVPGAGLLALAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +I   A +    V +Y+         T +F   +I   +VD  L+P L+G  + +P  
Sbjct: 257 LGIIQVPATLITVPVIVYVFSSEGASLTTIVFAVYSILAGLVDNVLKPLLLGRGVDVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               G +GG+   G+LGLFIGP+++A+   ++ + +  
Sbjct: 317 VVLIGALGGMVASGILGLFIGPIVLAVGYRLFWQWVDD 354


>gi|254248509|ref|ZP_04941829.1| hypothetical protein BCPG_03340 [Burkholderia cenocepacia PC184]
 gi|124875010|gb|EAY65000.1| hypothetical protein BCPG_03340 [Burkholderia cenocepacia PC184]
          Length = 356

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 94/344 (27%), Positives = 161/344 (46%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              Q     +   ++L++L+ ++ F   +  A +I    WP+   F          T +A
Sbjct: 16  RVQQIARVALYAALLLLALWVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRNRPTLIA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T S+  L ++P+         +  +L   +     +GIP+P  +S +P G      W
Sbjct: 76  TVITTSISLLVVLPVAVATTQAFAQAHDLREWLHTIQDNGIPLPDVVSRLPYGAAQITEW 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + T +     +    F  +FG       L   FM++ LF   R G  
Sbjct: 136 WQANLGHP---LHAATAMHGVNGEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHK 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F     ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    
Sbjct: 193 LSGALLQGARRAFGRNGAELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAAL 252

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++TA+ AM+P  AP+ F   +++L ++G    A  +   G I +F+ +  +RP L+GG
Sbjct: 253 LGLVTAVAAMLPFCAPVVFCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGG 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E I 
Sbjct: 313 STRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|226952105|ref|ZP_03822569.1| PerM family permease [Acinetobacter sp. ATCC 27244]
 gi|226837161|gb|EEH69544.1| PerM family permease [Acinetobacter sp. ATCC 27244]
          Length = 398

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 127/348 (36%), Gaps = 6/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + ++L  LY LK    P + A +I +   P+    + K +        +  +
Sbjct: 7   RRIFILAGIALLLWVLYLLKPIVIPFVGAFLIAYFFSPLVDVLV-KIKLPRWLAISVVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     V L FL      ++      +            +L  +        +      
Sbjct: 66  GIGVTLTVVLWFLAPLVWKQLIYARDSIPAGIHWVNAT--FLPWMSETFDLVPMEIDTDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + +    +T   ++ I       ++ G+ F+     II + I  F+F  D   + Q L
Sbjct: 124 ISKVVMEYVQTNYSSDSIQTFALRLAQSGLNFIQIGGIIILIPIISFYFLLDWERMLQSL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A   KI R    V+ +   G  ++ +  G++      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEASTLKIIRECHSVLGAFVKGQFLVMLLLGVIYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +      +     +   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVVATLFQFGLDWTQLLLVGAVFLVGQMVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ I   + A+I V+ + +    ++++
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLRHARDNYEKSR 351


>gi|21243684|ref|NP_643266.1| permease [Xanthomonas axonopodis pv. citri str. 306]
 gi|21109264|gb|AAM37802.1| permease [Xanthomonas axonopodis pv. citri str. 306]
          Length = 388

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 126/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S     V+  V
Sbjct: 14  RRLKWAAVIVGVLWVVSLLAPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNVAVVLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LF++ L+ L      ++  L+  +       I                +L      
Sbjct: 73  LATLLFVLALMILVPMIERQIMTLIDALPQMRNWAIGTA---IPWLEAKTGMQLMAWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S           +  + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGAAKTLFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     ++++    V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTASRLAQESNDVLGGFIRGQFLVMLALGAIYATGMSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGIVLALLAAIVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +      + 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHEQYTRSD 358


>gi|118590149|ref|ZP_01547552.1| permease, putative [Stappia aggregata IAM 12614]
 gi|118437121|gb|EAV43759.1| permease, putative [Stappia aggregata IAM 12614]
          Length = 365

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 109/351 (31%), Gaps = 9/351 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     + + +  + LY       P ++ + + +   P+      K      +  + 
Sbjct: 3   LRRQVQFWLISLIVFCLFLYVFSSVLLPFVAGMAVAYLLDPVCDRLE-KLGMGRMWATLC 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              + + + ++  + L      ++   + K     +    +            A      
Sbjct: 62  ILFAFVVILVMFFILLLPLLGNQLSLFLEKFPELIRKLQALLSENFPANLASVAGISAED 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   +L          + I  + +     G   L      +   +  F+   D   + 
Sbjct: 122 LQSSMSNLIGQ-----GASFIGKLAQSLWSGGQALLSILSLFVITPVVAFYLLLDWDRMV 176

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++DS       +  + ++R + + +     G   + +  G     +  L G+   + +G
Sbjct: 177 ARIDSWLPRPHLSEIRGLAREMDQAVAGFVRGQVSVCLILGSFYAISLALVGLNFGLLIG 236

Query: 246 VITAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP         +S+    +           +     +  F+    L+P LVG
Sbjct: 237 MAAGLVSFIPFVGAGLGLVLSLGVAIVQFWPEWPWIVAVAAVFGVGQFLEGNILQPKLVG 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L  +   F L       G +G+ I     A+I V+ + ++     + 
Sbjct: 297 DSTGLHPVALMFALFAFGYLFGFVGMLIAVPAAAMIGVLARFALKQYLASP 347


>gi|229161773|ref|ZP_04289752.1| hypothetical protein bcere0009_25590 [Bacillus cereus R309803]
 gi|228621740|gb|EEK78587.1| hypothetical protein bcere0009_25590 [Bacillus cereus R309803]
          Length = 348

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 125/342 (36%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFVFNPVLVFLENK-KVPRNLAILLLYLFIITLAG 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S      +   +   I
Sbjct: 71  VAIGVVVPTISQQLMDLVKNMPTYIKEGKIYIQELSHHRLFEWVSTQNYVSIETIEKNAI 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +       I   A+    I  +  L I  +   LF+ ++DG +  ++  SL    
Sbjct: 131 ASLKEIPNT----ITSSATAVFGIITNVALVIFTVPFILFYMFKDGHAFPRKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G +++ I  G      Y + G+P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQSLVCIFVGAFTFIGYLIIGLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +   + A+   +    +   K  +    
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKRNNRK 348


>gi|217969998|ref|YP_002355232.1| hypothetical protein Tmz1t_1578 [Thauera sp. MZ1T]
 gi|217507325|gb|ACK54336.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 373

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 5/345 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + I+ +++  ++L+S   L  F  PV  A+II + +W  Y    S+     T  A++ 
Sbjct: 10  VRRVILGFLLGGLLLLSYAVLHLFIVPVAWAVIIAYATWTPYRQLRSRLPRYPTISALLM 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTK 125
           T+ +   F++P L++      E+   ++ V    + G   +P ++  +P      +    
Sbjct: 70  TLLLSAAFVLPALWIGMLLRTEVGVAIAAVTAQIREGAFVLPEFVRTLPWIGDDLQAMVG 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+          T     G D         G           F +I +FF YRDG  + 
Sbjct: 130 ELTREPEALRAQLTEWVRQGSDLALTLIGDVGRNAAKL----GFALITVFFLYRDGERVL 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +Q+ ++               V  + ++   G+   AIG+G V G  YW AGVP+ V +G
Sbjct: 186 EQVVAVLRRFLGERLDPYLSAVGGMTKAVVWGLIATAIGQGFVAGLGYWWAGVPAPVLMG 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            ITA++AMIP G P ++ ++  +LL+ GN      L LWGA+ +  VD  +RP ++    
Sbjct: 246 AITAVIAMIPFGTPFAWGSIGAWLLLTGNTVEGIGLLLWGALVVSWVDNLVRPLVISNAT 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++PFL   FG++GG+   GL+GLF+GPV++A++  +W E +   +
Sbjct: 306 RIPFLLVMFGVLGGLSAFGLVGLFLGPVVLAVLMAVWGEWLEESE 350


>gi|227891763|ref|ZP_04009568.1| permease [Lactobacillus salivarius ATCC 11741]
 gi|227866422|gb|EEJ73843.1| permease [Lactobacillus salivarius ATCC 11741]
          Length = 376

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 120/345 (34%), Gaps = 6/345 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+      F    F PV+ +  + +   P+    +     K + + T    I  ++V  +
Sbjct: 29  FVFQPVAAFFSTLFIPVIISGFLYYMLLPLVKLLMKVKIGKFKINRTGAVAIVFIAVFAI 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + + FL    +++++ L++K            +    +     +S L    L    + 
Sbjct: 89  IAMSIAFLLPKIIVQVENLITKSPTYVSQLEKNFQHF--LKYDSRSSWLKDIDLQSYLNR 146

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              S + +    +  +            +  ++++ +   LF+  +DG+ +   +     
Sbjct: 147 FEGSGSEMIAKFMKSLTNSLGSIISAITNITVTVLTVPFMLFYMLKDGYKLMPSILKFVP 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A  + + + +   +     G  I  I  G+     Y LAGVP  +  G+      +
Sbjct: 207 RKRTAQVEAMLQDMSNTLSKYISGQAIECIFVGICTAIGYGLAGVPYALLTGIFAGATNI 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      ++ L +  +   A    +   I   I    + P ++G  + +  L   
Sbjct: 267 IPYIGPYIGLVPALILSLTDSFNTAVMAIIVCIIVQQIDGNLIYPNVIGKSVDIHPLTII 326

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L+   +  GLLG+ +     A+I VI K     I    E    
Sbjct: 327 LLLLVAGKIAGLLGIILCIPFYAIIKVIVKHVREVIILENESSDE 371


>gi|326940684|gb|AEA16580.1| hypothetical protein CT43_CH2906 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 361

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 84  VGVGVVVPTISQQLMDLVKNMPSYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 140 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 357


>gi|257069438|ref|YP_003155693.1| putative permease [Brachybacterium faecium DSM 4810]
 gi|256560256|gb|ACU86103.1| predicted permease [Brachybacterium faecium DSM 4810]
          Length = 477

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 104/334 (31%), Gaps = 15/334 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+      +IL  L  +     PVL A+++     P+            T  + +A +
Sbjct: 33  RLIVVIAASALILWGLLQITTLVIPVLIAVLLAAMLNPVVKVLTRYTFLGRTAASGVALL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +              +  ++  K V   Q                       +  +
Sbjct: 93  GLLLVIAGMFTLAGRQLFAQFADIQEKAVTGFQSLTDWATS-------------TFQIDA 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I        +  D +   A     +  +    I+  + ALFFF   G SI + +
Sbjct: 140 PMVDAAIDEGLTQLQDNSDQLVSGALGTAAVLGNVATGIVICLFALFFFLAGGSSIWRWV 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP-SHVALGVI 247
             L          +  R   K + +      ++A  +   +       G+    V + ++
Sbjct: 200 VGLLPPAARVPTHEAFRRGWKALSAYIRTQILVAGVDATGISIGMVALGLGSYAVPIWLL 259

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + +P    I       + +L+  +   A  +     +        L+PFL+G  ++
Sbjct: 260 VFLFSFVPLVGAIVSGAIAVLLVLVLNSWIGAIIMLAIVLVVQQAESNILQPFLMGKAVE 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L  L    G+  GV    + G      L+A +  
Sbjct: 320 LHPLAVLLGVAAGVMVANIAGALFAIPLIAFVNA 353


>gi|15964938|ref|NP_385291.1| putative permease protein [Sinorhizobium meliloti 1021]
 gi|15074117|emb|CAC45764.1| Putative permease [Sinorhizobium meliloti 1021]
          Length = 371

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 115/351 (32%), Gaps = 9/351 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++   +  L        P L+ + + +   P+      +   S     + 
Sbjct: 10  LQRQIFFWLLVLVGFIAFLLVFSSILLPFLAGMALAYFLDPVADRLE-RLGLSRLMATIA 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + +  + L+ +    + +  E + K+                     W +   T 
Sbjct: 69  ILVAFVVVLALSLMIIVPLVVTQAAEFIQKMPGYITRLQEFLTDSQSTLLPDWLAGQMTT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   L          + +  + +     G+  L+     +   +  F+   D   + 
Sbjct: 129 IKQNSAKLLEQ-----GASFLGTLFQQIWNSGLALLNILSLFVITPVVAFYLLLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++DS     +    ++I+R +   I     G   + +  GL  G    + G+   + +G
Sbjct: 184 DRVDSWIPRDYVEVVRQIARDMNTTIAGFVRGQGSLCLILGLYYGIGLTMVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++ +       +      +        F+    L+P LVG
Sbjct: 244 LFAGMISFIPYVGSLVGLVLALGVALVQFWPDYVWILLVLAVFFSGQFLEGNILQPKLVG 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L+      G +GL +     A I V+ +  I    ++ 
Sbjct: 304 KSVGLHPVWLMFALLAFGALFGFVGLLVAVPAAAAIGVLVRFGIQRYLDSD 354


>gi|149174467|ref|ZP_01853093.1| hypothetical membrane spanning protein [Planctomyces maris DSM
           8797]
 gi|148846577|gb|EDL60914.1| hypothetical membrane spanning protein [Planctomyces maris DSM
           8797]
          Length = 443

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/370 (18%), Positives = 153/370 (41%), Gaps = 25/370 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  +I+ + ++    +  F  P+  A ++   S P+ + FI +      F A + T  
Sbjct: 8   TVILCLILALGIMFFKVIMPFILPLFLAAVVAMISQPLLNYFIRRTNGHVRFAAGLTTTI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELV-------------SKVVLANQHGIPVPRWLSDIPGG 116
           ++   ++PL    + G L++   +               +    +      +   D    
Sbjct: 68  IVSAILIPLCVGIFLGSLQLFTTIVNTLDEANWNKTVQTIREKVEISNDKFQQFVDWSHE 127

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFI----------PRFASRFGMIFLDYCLS 166
               ++ +   S       +SE F++ N    +                         ++
Sbjct: 128 YLQYDIDSLVTSGKSGEPKISEDFIRKNLQATLVPIAKRSLGVAASTVGLLGTLFSALIA 187

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
            I  IIAL++F  DG+ + +   SL   +   Y +++     KV+R+  +   + AIG+G
Sbjct: 188 WIMFIIALYYFLADGYLLIESTQSLIP-VHVDYQRRLIDQFQKVVRAVVIATFLAAIGQG 246

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWG 285
           L    A  + G    +   ++  I +M+P     + +   +I+L+ +G+  +A  L L G
Sbjct: 247 LTTAIALSIVGFDHFIVFLILATITSMVPLLGSWLIWLPCAIWLMYQGDWGSAIFLILIG 306

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +  +D  +R +++    KL  L  F  ++GG++ MGL G+FIGP++ + +  + +  
Sbjct: 307 TLVVGTMDNIIRTYVLQSDAKLHPLLAFVSVLGGLQVMGLWGVFIGPIVASCLHALIQIF 366

Query: 346 IMAIKENKEK 355
              +K   ++
Sbjct: 367 NTELKAFSQE 376


>gi|116618937|ref|YP_819308.1| permease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097784|gb|ABJ62935.1| Predicted permease [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 369

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 116/336 (34%), Gaps = 10/336 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P++ A  + +   P+ +          +       +I  V  + +    L+ L
Sbjct: 40  FISTVFVPLIVAGSLYYVLKPVLTLLKKITVKGHKMPHQLAVIITFVLFLAVIAGSLILL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q+              + +  L   +LS        +    
Sbjct: 100 IPTLVAEITNLITALPEFAQNVQRFVT------DSLQSKWLSNLNLSIDIDEVKSAVGKY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +            +     ++++ + + LF+   DG  +   +  L    F    K
Sbjct: 154 SASFLTITAGTLGSAVSMVTSVTINVVTIPVVLFYMLSDGDRLLPAIQKLFPVRFADNVK 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  + K I     G  +  +  G+ +   Y + G P    LGVI  I  ++P   P  
Sbjct: 214 ELTLKMDKTIERYISGQALEMLFVGMTMAVGYLIIGEPYAWLLGVIAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      + +   +   +    + P ++G  +++  L     L+    
Sbjct: 274 GVIPALIVASTQSWKQMLLVMIVMMVVQQLDGNFIYPNVIGKSLQIHPLTIMILLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             G+ G+ +   + A+   + K +I   +  KE + 
Sbjct: 334 LWGIFGMILIVPMYAVARTVVKFAIEMRQLTKESLE 369


>gi|156935110|ref|YP_001439026.1| hypothetical protein ESA_02961 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533364|gb|ABU78190.1| hypothetical protein ESA_02961 [Cronobacter sakazakii ATCC BAA-894]
          Length = 362

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 140/352 (39%), Gaps = 3/352 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     ++  + ++    +K + + VL A+I+    +PI           +   +++  V
Sbjct: 8   RAFFILILFIVSILFFNLVKPYLSAVLWAVILAVIFYPIKRRLCHMMNGRNNIASLLTVV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L  VPL  +    + E   + S V   N     +   +  I    WA  +  ++  
Sbjct: 68  LICLLVFVPLAVVASSLVSEFNAVYSDVQANNTTLPTLLADVVRILP-DWAQRMLAENQL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  ++               +    M+  LFF  +DG  +   +
Sbjct: 127 DNAAAIQQKISGVALKGSQYVAGSIFLISRNTFSVVIGFGIMLYLLFFLLKDGSRLVSVV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S    L     +++ R    V R+T  G  ++A+ +G++ G A++ AG+ + +  G + 
Sbjct: 187 LSAVP-LSDKVKQRLFRRFAAVARATVKGTVVVAVVQGILGGVAFYFAGIGASILWGSLM 245

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P  GA + +    IYL   G I  A  L  +  + + + D  LRP LVG  I++
Sbjct: 246 AFLSLVPAVGAALIWVPAVIYLFTTGAIIKAVLLTAFFVVVVGLADNLLRPLLVGKDIRM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           P        +GG+   G+ G  +GP++ AL    W          +     +
Sbjct: 306 PDWLILLSTLGGLEVYGINGFVVGPLIAALFVTCWNTFSAGPGRTRALPEKS 357


>gi|90414071|ref|ZP_01222054.1| putative permease PerM [Photobacterium profundum 3TCK]
 gi|90324866|gb|EAS41394.1| putative permease PerM [Photobacterium profundum 3TCK]
          Length = 356

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 104/352 (29%), Gaps = 12/352 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P  +    I+     ++YF     AP+L A+++ +           +     T  
Sbjct: 11  RRFSDPHAVSLIAILLGGFFTIYFFGNLIAPLLVAIVLAYLLEWPVMRLE-RLGLPRTVA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++  +    L ++    L      ++    + V             L +          
Sbjct: 70  VLVVLLIFASLMVMAFFGLVPTIWHQVGNFAADVPTMFNDLQHYVSSLPERYPDFVQPHQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  +   +     +    +  +   A+          + +I + + +FF  +D  
Sbjct: 130 AITFMTTLREKVMGLGESVVKGSLASLVSLAT--------IAVYLILVPLLVFFLLKDKD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +  +          K+   + + I +   G        G+     + +  +   V
Sbjct: 182 EMLATMSGILP-KNRRLTSKVGAEMNEQISNYIRGKVTEIFIIGIASYITFAVMDLRYAV 240

Query: 243 ALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+  +  +IP     + T     + L   G   +   L     +   +    L P L
Sbjct: 241 LLGVLVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPDFWWLLAAYGVIQALDGNVLVPVL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               + L  +     ++      G  G+F    L  L+  +W     +  + 
Sbjct: 301 FSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWGALPSSEPDE 352


>gi|116491173|ref|YP_810717.1| permease [Oenococcus oeni PSU-1]
 gi|290890689|ref|ZP_06553759.1| hypothetical protein AWRIB429_1149 [Oenococcus oeni AWRIB429]
 gi|116091898|gb|ABJ57052.1| Predicted permease [Oenococcus oeni PSU-1]
 gi|290479664|gb|EFD88318.1| hypothetical protein AWRIB429_1149 [Oenococcus oeni AWRIB429]
          Length = 382

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 112/329 (34%), Gaps = 4/329 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                 APV++A I  +   P  +    K   S   + +I  + V    ++ ++++    
Sbjct: 54  LFSAVGAPVITAGIFYYLLIPSVNWAHDKFHLSKQLIVLIIFLFVALFLVLFVVYIAPII 113

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
                           H     +     PG            ++     I       TNG
Sbjct: 114 RDNFIVFFKHWPDYYSHWSKRLQVWLSYPGLKPIKNWVLDTNNNFNKTIINWSKNYLTNG 173

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  + +      MI +            L++  +DG  + + +             ++  
Sbjct: 174 IAGVGKITRVITMIVITLIT----FPFILYYMLKDGDQLPRYISQFFPARTRPSLLEVLH 229

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K I     G  + A+   ++    + + G+P  + +G++   + +IP          
Sbjct: 230 EINKQISDYLRGQILTAVAVSIMFMIGFSIIGLPYGIWIGLLAGPLNLIPYLGSFLVMVP 289

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + + G I     + +   IE  +  + + P ++G  + +  +     L+G     GL
Sbjct: 290 AIIIALFGGIHLVIAVLIVFVIEQTLESRLIHPKIMGASMNIHPITVLVILLGAGEMFGL 349

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LG+  G    A++ V+   S    +EN E
Sbjct: 350 LGVAFGIPTYAVLKVLIGRSYHWWRENSE 378


>gi|289679981|ref|ZP_06500871.1| hypothetical protein PsyrpsF_42172 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 348

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/350 (20%), Positives = 157/350 (44%), Gaps = 5/350 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVAL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         ++I   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMATLKPHLGQVGNWILARSAQIGSGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +   
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARP 347


>gi|118587353|ref|ZP_01544779.1| transport protein [Oenococcus oeni ATCC BAA-1163]
 gi|118432177|gb|EAV38917.1| transport protein [Oenococcus oeni ATCC BAA-1163]
          Length = 382

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 112/329 (34%), Gaps = 4/329 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                 APV++A I  +   P  +    K   S   + +I  + V    ++ ++++    
Sbjct: 54  LFSAVGAPVITAGIFYYLLIPSVNWAHDKFHLSKQLIVLIIFLFVALFLVLFVVYIAPII 113

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
                           H     +     PG            ++     I       TNG
Sbjct: 114 RDNFIVFFKHWPDYYSHWSKRLQVWLSYPGLKPIKNWVLDTNNNFNKTIINWSKNYLTNG 173

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  + +      MI +            L++  +DG  + + +             ++  
Sbjct: 174 IAGVGKITRVITMIVITLIT----FPFILYYMLKDGDQLPRYISQFFPARTRPSLLEVLH 229

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K I     G  + A+   ++    + + G+P  + +G++   + +IP          
Sbjct: 230 EINKQISDYLRGQILTAVAVSIMFMIGFSIIGLPYGIWIGLLAGPLNLIPYLGSFLAMVP 289

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I + + G I     + +   IE  +  + + P ++G  + +  +     L+G     GL
Sbjct: 290 AIIIALFGGIHLVIAVLIVFVIEQTLESRLIHPKIMGASMNIHPITVLVILLGAGEMFGL 349

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LG+  G    A++ V+   S    +EN E
Sbjct: 350 LGVAFGIPAYAVLKVLIGRSYHWWRENSE 378


>gi|163733469|ref|ZP_02140912.1| hypothetical protein RLO149_17498 [Roseobacter litoralis Och 149]
 gi|161393257|gb|EDQ17583.1| hypothetical protein RLO149_17498 [Roseobacter litoralis Och 149]
          Length = 355

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 118/341 (34%), Gaps = 14/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++LV+L FL     P +    I +   P+      +   S      I T+  M +F
Sbjct: 14  IATAVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLE-RLGLSRVAATAIITLCGMMVF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +  L +    + +  +LV+      ++                                
Sbjct: 73  FIVALLVIPALVEQAVKLVNVAPEYARNITAFL----------TERFPTLLDEDSAMQRS 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + S      +    +   A       L+  + ++ + +   +   D  +++ ++DSL   
Sbjct: 123 LHSLGETIQSRGAELLETALSSAASLLNVLILLVIVPVVAVYLLLDWDNMTAKIDSLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + +V+ S   GM  + +  G     A  LAG+   + +G I  ++  I
Sbjct: 183 DHAPTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMLAGLQFGLVVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+  +   +    A+   +    + P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWVSVGIIAGIFALGQVLEGNVITPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               L       G +G+ +   + A + V+ +  +     +
Sbjct: 303 LLLALSVFGALFGFVGMLVAVPVAAALGVVARFGVAKYTSS 343


>gi|307315631|ref|ZP_07595168.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306898698|gb|EFN29361.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 371

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 153/339 (45%), Gaps = 3/339 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L  F +  L A +I F++WP Y  F           A   TV V+ + + PL  
Sbjct: 22  IGCTLVLWPFLSATLGAAVICFSTWPAYRLFERAVGGYRALAAAAMTVLVVVVIVAPLAL 81

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L       +  LV+ V    + G P P    D   G+  +           +    + T 
Sbjct: 82  LATTLADNISSLVAGVTNVLEQGPPAP---PDWVRGLPIAGEGLATYWEGLAHNAPAFTI 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                I      A   G +F    L +   I   FF +  G  ++     + E +  A  
Sbjct: 139 ELKKVIGPFADVALIGGTLFGAGLLELALSIFIGFFLFLHGRRMTALTRQIAERVAGARA 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +++  +V   +     G+   A+ +GL+ G  +W+AGVP  + LG +T +++ +P G P 
Sbjct: 199 RRLLSVVGVTVTGVVYGLIGTALAQGLLAGVGFWIAGVPQALLLGCLTFVLSFVPAGPPF 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+++L ++ +++    + +WG + +  +D  LRP+L+G    LP L   FGL+GGV
Sbjct: 259 VWGPVALWLFMQESVWWGIFVAIWGLLLVSSIDNFLRPYLLGRNTNLPVLLGLFGLIGGV 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              GL+GLF+GP L+A+   +++E I A  E + +  S+
Sbjct: 319 LAFGLIGLFLGPTLLAVAHSLFREWIAAELEERRQPPSS 357


>gi|282876206|ref|ZP_06285073.1| putative membrane protein [Staphylococcus epidermidis SK135]
 gi|281295231|gb|EFA87758.1| putative membrane protein [Staphylococcus epidermidis SK135]
          Length = 368

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 123/349 (35%), Gaps = 12/349 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  +++FI     Y  + F         P++ +L++ +   PI +     +        
Sbjct: 2   VLLGIVIFIFDKISYVFQPFIIVFNTIAAPIIVSLVLFYLFNPIVNMMERYR-IPRLLGI 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            I  V+++ +  + +  L      +++  +                L++          +
Sbjct: 61  TIIYVAIIGIITLIVNLLIPIIGSQIESFIKNTPNYLHKITRSLDKLNN----NTILSGY 116

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              ++            + ++  D      + F     +  + I      LFF  +DG  
Sbjct: 117 MGQVNEWLESAQKKIPSMVSDYSDGFGSKLATFAEAVANIGIVIGTTPFVLFFMLKDGHK 176

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                  +    F   +  +   +   + S   G  I++   GL+L   Y + G+   + 
Sbjct: 177 FKDYTTKIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGLLLFIGYSIIGLKYALV 236

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  I A+ +++P   P    + +I + I  +      L +   +  F     + P ++G 
Sbjct: 237 LASIAAVTSVVPYLGPTIAISPAIVIAIITSPLMLLKLAVVWTLVQFFEGHFISPNVMGK 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +K+  L   F L+     MG++G+ IG  L A++ V+     M  K  
Sbjct: 297 TLKIHPLTIIFILLCAGNLMGIVGVIIGIPLYAVLKVLVSHIFMLFKRR 345


>gi|271969818|ref|YP_003344014.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270512993|gb|ACZ91271.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 423

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 120/356 (33%), Gaps = 21/356 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISKKE 56
            +M     +  +     +L + + ++           ++ +L +     P   +   +  
Sbjct: 82  RSMRGNPFVFGFTAALGVLTAWWLVQAVMSASSVLILIIVSLFLAIGLNPAVENLQKR-G 140

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            +      +  + V+ +F V  L +      +  + V K+    Q     P         
Sbjct: 141 LARVVAITVVFLGVIAVFAVFGLAVVPPLTTQSTDFVEKLPQYVQELQNNP--------- 191

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +        Q L+ L +     +    +      FG + +    + + +++   +
Sbjct: 192 -----MIRDLDQRFQILEKLQQYVTSGDFGSQMFGGVLGFGQVLIGAVFNALTVLVLTLY 246

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F     S+ +    L           +   +   I     G  II++  G+         
Sbjct: 247 FLGSLNSLKKMAYRLVPKSRRTRAGLLGDKIIDSIGGYVAGNLIISLIAGVTTFFFLIAM 306

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            VP  +AL +I A+  +IP         V+  +    +        ++  +   + +  +
Sbjct: 307 KVPYALALALIVALTDLIPMVGAFIGAGVASLVGFFVSPTVGIICVIFFTVYQQVENYWI 366

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            P ++   + +P L T  G + G   +G++G  +G  L+A + +I +E +M  +E 
Sbjct: 367 APSVMKSSVDVPPLATIVGALVGGALLGVVGALLGIPLVAALLLIVREVVMPRQEQ 422


>gi|170735629|ref|YP_001776889.1| hypothetical protein Bcenmc03_3243 [Burkholderia cenocepacia MC0-3]
 gi|169817817|gb|ACA92399.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 356

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              Q     +   ++L++L+ ++ F   +  A +I    WP+   F          T +A
Sbjct: 16  RVQQIARVALYAALLLLALWVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T ++  L ++P+       + +  +L   +     +GIP+P  +S +P G      W
Sbjct: 76  TVITAAISLLVVLPVAVATTQAIAQAHDLREWLHSIQDNGIPLPDVISRLPYGAAQITEW 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + T +     +    F  +FG       L   FM++ LF   R G  
Sbjct: 136 WQANLGHP---LHAATAMHGVNSEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHK 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F     ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    
Sbjct: 193 LSGALLQGARRAFGRNGAELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAAL 252

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++TA+ AM+P  AP+ F   +++L ++G    A  +   G I +F+ +  +RP L+GG
Sbjct: 253 LGLVTAVAAMLPFCAPVVFCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGG 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E I 
Sbjct: 313 STRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|315221750|ref|ZP_07863664.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315189136|gb|EFU22837.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 392

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +  L F+     PV+ A ++ +   PI        + +      I  + +  L I
Sbjct: 42  ISFIFIPVLEFIGVIMLPVILAGLLYYLLNPIVDWMEKH-KVNRLVAITIVFILIALLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  +    +    + +   +            +  ++      
Sbjct: 101 WGLAVAIPSLQHQIVSFVKNLPANLKKSNKIIQDFLENRISDDVKPQLEEIANNFSDQVT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  ++++    S    + +        M   LF+  RDG ++   L       
Sbjct: 161 AWASNFSSKAVNWVSTLISTASQVIVAII----IMPFILFYLLRDGKNLKSYLTKFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     +I   V   + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 FREPVGQILTDVNTQLANYVRGQVTVAIIVAIMFILFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPIMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTAGSMFGIWGVLLGIPVYASAKVVIAAIFKWYKK 372


>gi|260592635|ref|ZP_05858093.1| putative membrane protein [Prevotella veroralis F0319]
 gi|260535405|gb|EEX18022.1| putative membrane protein [Prevotella veroralis F0319]
          Length = 374

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 117/353 (33%), Gaps = 13/353 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIAT 67
           +  +  + +  + + +  L     P   A  + +  +PI      K    S     ++  
Sbjct: 12  RWSLTALAVVAVFLVIKGLSSVLLPFFIAWFLAYLLYPIVKFVQYKLHVPSRALSIIVTM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ +    L F+    + ++  L++                + I   +  ++   +  
Sbjct: 72  IFVIAIIAGVLYFIVPPMIGQIDRLMTIANRYLHETAHTNNISAMIQQWVSENQYQIERF 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                     ++ +                   +   ++    ++ +FF   D   ++  
Sbjct: 132 LKSPDFTDAIKSVMPKLFS------VIGQTASIVLSIIASFITLLYMFFILLDYEFLTSN 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +       +W+++ + V + + +   G  ++++  G++    + +   P  + LG++
Sbjct: 186 WIRIFPKKARPFWRELEQDVERELNNYVRGQGLVSLCMGVLFCIGFTIIDFPMAIGLGIL 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ +IP     +    +   L       +             AI   ++D  + P ++
Sbjct: 246 IGVLNLIPYLHTFALIPTAFLALLKAADTGQNFWIIFGSALAVFAIVQALMDMVITPKIM 305

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  + L        L      +G +GL I   L  LI   W+  +    E++E
Sbjct: 306 GKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEHEDEE 358


>gi|76788071|ref|YP_329894.1| hypothetical protein SAK_1281 [Streptococcus agalactiae A909]
 gi|76563128|gb|ABA45712.1| membrane protein, putative [Streptococcus agalactiae A909]
          Length = 396

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 119/361 (32%), Gaps = 18/361 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++  MI F++ ++++              FL     P++ + ++ +   P+ + 
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         +     ++ L I  +         +++  +  +              
Sbjct: 78  LEKR-GIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQ---MET 133

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           S         + +   +S   S                +  +A           ++ I  
Sbjct: 134 SSFIDHNPWLKSYKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVTVATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFTLALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373

Query: 351 E 351
            
Sbjct: 374 A 374


>gi|327484686|gb|AEA79093.1| Putative permease PerM [Vibrio cholerae LMA3894-4]
          Length = 354

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 112/352 (31%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELAHLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    + + ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVIGNAKNKVLGMGESVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMLRMASGILP-RNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G  G+F    L  L+  +WK      +E
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEE 351


>gi|320457519|dbj|BAJ68140.1| putative transport protein [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 515

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 109/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 17  RALLYVALAVIVFMFCWRSWGDISYLVFDIIISLFLALAVEPLVVALVAH-GWKRGVASA 75

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +                        +  T
Sbjct: 76  VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYGQIREFAD------------QYTT 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 124 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+   +       +  VP  + L
Sbjct: 184 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINAICTAIFLEILHVPYWLPL 243

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 244 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 304 RTMDINAAVAFLSVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 351


>gi|83954041|ref|ZP_00962761.1| membrane protein [Sulfitobacter sp. NAS-14.1]
 gi|83841078|gb|EAP80248.1| membrane protein [Sulfitobacter sp. NAS-14.1]
          Length = 359

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 110/350 (31%), Gaps = 14/350 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q     +   I LV L+F      P L    I +   P+     +    S     ++
Sbjct: 5   IRDQMKYWGVAGAIFLVFLWFTGNVLLPFLIGAAIAYFLDPVADRLEA-MGLSRAMATMV 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + +F++  L +    + +   L        ++                       
Sbjct: 64  ITLVALLIFVLMALLVIPTLINQAVNLFEVAPELTRNFTNFL----------TERFPALL 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I S           +   A       L+  +  + + +   +   D   + 
Sbjct: 114 DEGSTLRSSINSIGSTIQERGGEVLNTAISSAASLLNVMVLFVIVPVVAVYLLLDWDRMV 173

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+D L         ++++R + + +     GM  + +  G     A  L G+   + +G
Sbjct: 174 AQIDRLLPRDHAPVIRRLARDIDRTLAGFIRGMGTVCLILGAYYAIALMLVGLQFGLVVG 233

Query: 246 VITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            I  ++  IP    +   A++I L      G+ F+   +     +   I    L P LVG
Sbjct: 234 FIAGLVTFIPYLGAVLGGALAIGLALFQFWGDWFSIGMVAGIFVLGQMIEGNFLTPKLVG 293

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + L  +     L       G +G+     + A + VI + +     E+
Sbjct: 294 NSVGLHPVWLILALSVFGSLFGFVGMLAAVPIAAALGVIARFATEQYVES 343


>gi|313497990|gb|ADR59356.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 350

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 158/352 (44%), Gaps = 5/352 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N + +++ +++ ++   L+ +  F + +L   I+ F SWP+            T  A +
Sbjct: 3   NNDRLLVQILLVALLGAGLWVMAPFISALLWGAILAFASWPLMRFLTRLLGGRETLAAGL 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWT 124
            T++ + +  +PL++L +     +++  + V           P WL  IP          
Sbjct: 63  LTMAWILIVALPLVWLGFNLADHIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNGW 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L    +  + S         +++   +++ G   L+  LS++F+     FFYRDG  +
Sbjct: 123 QSLDQQGAALLASIKPYFGQVGNWLLARSAQIGSGVLELTLSLVFVF----FFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +  L   L     +    +V   ++    G+   A  + L+    + +AGVP  + L
Sbjct: 179 AAFVLRLLHRLVGERAEYYLDLVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T ++++IP G P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GLVTFMLSLIPMGPPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             LP +    G+ GG+   G +GLFIGP L+A+   +  +      +   + 
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVGYSLLLDWSRNAAQQPPQQ 350


>gi|325983248|ref|YP_004295650.1| hypothetical protein NAL212_2698 [Nitrosomonas sp. AL212]
 gi|325532767|gb|ADZ27488.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 602

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 121/363 (33%), Gaps = 25/363 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++ +L    +   + + ++L  LY+ +    PV  ++++ F   PI +    +      
Sbjct: 1   MKKNLLVTNNVSMLIALALVLGFLYWARIIVIPVALSILLTFLLTPIVAWLQQRGVARVV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A+ A++++  +         +    ++  L+        + +     +++        
Sbjct: 61  AVALAASLALSSIVGA-----IWGVTSQIGSLLDTYPQYENNILSKLNQITERDRDGILD 115

Query: 121 ELW------------------TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
           +L                      +   +  KI ++     +   F            L+
Sbjct: 116 KLQVVTERITEKLTNNPAIEDNLPIPADKKEKIEAQPVRIVDDGPFQLSQLWSVFGPMLE 175

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
              +   +I+ + F   +   +  ++ SL      A+  +      + +    L   +I 
Sbjct: 176 PLANAGLIIVLVCFMLLNREDLRDRVISLIGVEQLAHTTRAFEDAGERVSRYLLMQLLIN 235

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATC 280
           +G G+ +    WL GVP     G   A++  IP         + I L  L+  +   A  
Sbjct: 236 LGYGIAVALGLWLLGVPYAALWGFFGALLRYIPYLGAWLTAILPITLSLLLSPDWSLAIM 295

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +     +   I +  + P L G  I +        +       G +GL +   L   I V
Sbjct: 296 VLAMFCVLELITNMIIEPMLYGRGIGVSQAALLVCVAFWTWLWGPIGLILASPLTVCIVV 355

Query: 341 IWK 343
           + +
Sbjct: 356 LGR 358


>gi|115376869|ref|ZP_01464091.1| putative exported protein [Stigmatella aurantiaca DW4/3-1]
 gi|310821801|ref|YP_003954159.1| hypothetical protein STAUR_4552 [Stigmatella aurantiaca DW4/3-1]
 gi|115366111|gb|EAU65124.1| putative exported protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394873|gb|ADO72332.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 358

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 137/348 (39%), Gaps = 10/348 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E+      I   +    I++    L  F  PVL    +     P+      K +   +  
Sbjct: 5   ESKRWSNLIFAGLFALAIILFSRILLPFVMPVLLGGFLVVLFMPVQDFLCRKLKGRKSLC 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A + T +V  L +VPL  + +    E+ +L++ +    +        ++++P G+     
Sbjct: 65  AAVCTATVFLLILVPLAGVGWLVGRELLQLMADLPALLERVDLRNELIANLPHGLGRYVR 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                S  + + +        +        A     +  +  + +  M +++++F+ DG 
Sbjct: 125 VDPEGSETERVLL--------SAAAGGAAIAQHVLNMGSELLIDLFLMTVSMYYFFLDGR 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +   L       Y +  +R    V  +   G TI A+ +G V      + GVP   
Sbjct: 177 RLFAEATRLVPLDKR-YIQAFAREFADVAYAIVYGNTITALVQGAVGLVGLLIVGVPHAP 235

Query: 243 ALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G    I A++P G   + +  + + LL+ G +   T +  WGA  +  +D  +RP L 
Sbjct: 236 VWGAAMVIAALVPVGGTTLVWGPIGLLLLLSGKVGEGTFVLAWGAGVVSTIDNFIRPRLC 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G  + L  L  F  + GG+   G++GL +GP++ A+   + +      
Sbjct: 296 GSRMALHPLLVFLSMFGGMAVFGMMGLLVGPLIAAIFMAMVRIYRRDF 343


>gi|307546172|ref|YP_003898651.1| hypothetical protein HELO_3582 [Halomonas elongata DSM 2581]
 gi|307218196|emb|CBV43466.1| conserved hypothetical protein [Halomonas elongata DSM 2581]
          Length = 371

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 112/361 (31%), Gaps = 12/361 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M     + + ++  +++ +    + +L    AP L+AL+I F      +    ++     
Sbjct: 11  MERYFSDEEAVILLLVLILGFAVVIWLGQMLAPFLTALVIAFLLQGAVNGLTRRRVPH-L 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  +  + + +   L L      ++  L+ +       G  +   L      +   
Sbjct: 70  LAVLLVFLGFLGILLAMALILLPLIWNQLVNLLQETPRMFASGQSLLDDLQARYPQLITP 129

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +     +               T         +       L   + ++ + I +FF  +D
Sbjct: 130 DQIQTWIGMAGRE--------VTQLGQRALSLSLSSLGNVLSLIIYLVLVPILVFFMLKD 181

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +     SL          +I   +   I +   G  I  I  G V    +   G+P 
Sbjct: 182 RDRLVGFAVSLLPQR-RELMTRIWHEMDDQIANFVRGKFIEIIIVGSVSFFTFMFFGLPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L V+  +  +IP       T     +     G       + +   +   +    L P
Sbjct: 241 SALLAVLVGLSVLIPYIGAAVATLPVAAVAGFHFGISDQFVYVLIAYGVIQALDGNVLVP 300

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L    + L  +     ++      G  G+F    L  L+  +       I++ +E++S+
Sbjct: 301 VLFSEAVNLHPVSIILAVLFFGGIWGFWGIFFAIPLATLLKALVYAWPRGIQQRREEVSA 360

Query: 359 N 359
            
Sbjct: 361 E 361


>gi|163756542|ref|ZP_02163654.1| permease [Kordia algicida OT-1]
 gi|161323436|gb|EDP94773.1| permease [Kordia algicida OT-1]
          Length = 381

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 122/346 (35%), Gaps = 6/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M          +    +  ++  LY LK    P+L A+I+G   +P+   F  K   S  
Sbjct: 1   MTIQTKTTSRAVGLFTVIAVVFVLYVLKPLVMPLLFAMILGVMIFPVQQFFEKKWRCSRM 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F  + +   +  + ++ L  +F+            V   ++       +L D      + 
Sbjct: 61  FATIFSIFLIFSVTVILLFIIFFQLQEFTNGSEDYVGRISELYENTVAYLGDAFNMSNSK 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +   S    +   L     D I    +R G    D  L    + I LFFF   
Sbjct: 121 TVEGVDNTESSSGVDFNLNNLLKGNFDKITSLLTRSGSFMSDLVL----VPIYLFFFLYY 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +      L +H   ++  K+   +  V ++   G+  + +  G++        G+ +
Sbjct: 177 RRFLRTFAYKLFKHKSQSFVNKMINKIYNVQQNYLAGLLKVMLIVGVLNTITLLALGIEN 236

Query: 241 HVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +  G   AI+ +IP    I        + L+ K +I+ A  +  +     F+    + P
Sbjct: 237 AIFFGFFAAILLLIPYIGVIIGALLPAMVALVTKDSIWYAFGVIGFFGFIQFLEGNFITP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + G  + +        L+      G+ G+ +   ++A + +I+  
Sbjct: 297 KITGSKVNMNSFVAILSLIAFAMLWGISGMIVALPIIASLKIIFDH 342


>gi|77405418|ref|ZP_00782512.1| membrane protein, putative [Streptococcus agalactiae H36B]
 gi|77176000|gb|EAO78775.1| membrane protein, putative [Streptococcus agalactiae H36B]
          Length = 396

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 120/361 (33%), Gaps = 18/361 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++  MI F++ ++++              FL     P++ + ++ +   P+ + 
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         +     ++ L I  +         +++  +  +              
Sbjct: 78  LEKR-GIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D    + +   +   +S   S                +  +A           ++ I  
Sbjct: 137 IDHNPWLKS---YKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVTVATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373

Query: 351 E 351
            
Sbjct: 374 A 374


>gi|307730302|ref|YP_003907526.1| hypothetical protein BC1003_2282 [Burkholderia sp. CCGE1003]
 gi|307584837|gb|ADN58235.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 371

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/354 (20%), Positives = 150/354 (42%), Gaps = 5/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAAVGGRRR 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
           + A +    ++ + + P ++  +     + ++++ V    +     +P W++ IP    +
Sbjct: 61  WAATLMVFVILIVVLGPFVYAGFAFGAHVHDIIALVQRLFEAGLPDLPPWVARIPVVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + + +  +   S  I     L      +I   A             +   I+  FFFY 
Sbjct: 121 IQSFWETATSSNSELIAQLRTLAAPAGKWILSAAIAVT----HGLGLLALSIVLAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G      L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP
Sbjct: 177 GGEGAGAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGVLAGFGCWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG+ T  +++IPGG  I +   +I+L   G    A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLATFFLSVIPGGPVIVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +    ++
Sbjct: 297 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPASR 350


>gi|256832710|ref|YP_003161437.1| hypothetical protein Jden_1485 [Jonesia denitrificans DSM 20603]
 gi|256686241|gb|ACV09134.1| protein of unknown function UPF0118 [Jonesia denitrificans DSM
           20603]
          Length = 455

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/348 (11%), Positives = 106/348 (30%), Gaps = 22/348 (6%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +   +++  + + L+     L G F  ++ AL +     P+    +            
Sbjct: 78  KALWLTVLVVFLAIFLWRAMGSLTGLFINLVIALFLSLALEPMIVWLVRH-GWRRGGATA 136

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +   I  +       + +  +LV  +    +                       
Sbjct: 137 VTLFGSLIAVIGLVSVFGRMFIEQATQLVRTLPDMYESIAAWIEK--------------- 181

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +       +  L    +   G       A   G   + +  ++  +++  ++    G   
Sbjct: 182 RTQYDVPEMSQLQRQLIDQIGSAEAANQALAIGAGLVSFLFNLSVVLLVAYYLSAAGPRF 241

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + +           ++  I  + I        ++A            + GVP  + L
Sbjct: 242 RASICAWLSPAHQTEVLRLWDITQRKIADYINSRVLLAAICSFFTAIFLQIIGVPYALPL 301

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            V T +++  +P     I      ++ L  G++ +A  + ++  +   + +  L P +  
Sbjct: 302 AVFTGVVSQFVPTIGTYIGGALPIVFALTTGDLTDAVAILIFIVVYQQVENLWLSPKISA 361

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             ++L        ++G     G LG F+   + A I  I    +   +
Sbjct: 362 RALELNPAVALIVVLGFGAVFGALGAFLALPVAATITAIASTYLRRHE 409


>gi|262192246|ref|ZP_06050403.1| permease PerM [Vibrio cholerae CT 5369-93]
 gi|262031856|gb|EEY50437.1| permease PerM [Vibrio cholerae CT 5369-93]
          Length = 354

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELAHLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVISNAKNKVLGMGESVVKGSLASLISLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMLRMASGILP-RNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G  G+F    L  L+  +WK      +E
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEE 351


>gi|328554105|gb|AEB24597.1| hypothetical protein BAMTA208_12160 [Bacillus amyloliquefaciens
           TA208]
 gi|328912497|gb|AEB64093.1| UPF0118 membrane protein yueF [Bacillus amyloliquefaciens LL3]
          Length = 356

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 115/342 (33%), Gaps = 17/342 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++ ++I+++  +  +  +           P++ + ++ +   PI      K +      
Sbjct: 13  VLLLFLIIYLGTLIDFLFQPVVITAKTLFPPIVLSGVLYYLCRPIVRVLHEKVKLPEGIA 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +        LF++ L         +       +   +       R L D          
Sbjct: 73  ILAIYAGTAGLFVLFLYTAGPAVQKQFAAFTDHIPELSAKAENWIRHLQDSKWFSRIQHE 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +                   N    I    S       +  ++   +  AL++  ++G 
Sbjct: 133 DSF----------KKAADKAANYSGSIADSLSSLAGAAANAAITAAIIPFALYYMLKEGN 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              ++L  L         K+I + + + + S   G  +++   G+++ + Y++ G+   +
Sbjct: 183 KAPRRLLRLLPEKHQKEGKQILQDMDEALSSYIQGQLLVSFCVGVLVTTGYFIIGLDYPL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG    +  +IP   P   T   + + +  +   A  + +   I   +  + + P ++G
Sbjct: 243 VLGAFAMVTNLIPFIGPWIGTFPGVIVGLFDSPTRAVLVVIVVVIVQQLESQLISPQIMG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + +  L   F L+   +  G+ G+ +     A+  VI   
Sbjct: 303 RKLDIHPLTIIFLLLAAGKFSGIAGMLLAIPGYAVAKVIISH 344


>gi|315031394|gb|EFT43326.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
 gi|315166844|gb|EFU10861.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
          Length = 390

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 41  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 99

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 100 LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 153

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 154 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRK 213

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 214 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYL 273

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      A    L   +   +    + P ++G  +K+  L     L+
Sbjct: 274 GPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 333

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG+F+G    A+   I    I  +K  + +  +N
Sbjct: 334 VAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 375


>gi|269837139|ref|YP_003319367.1| hypothetical protein Sthe_1109 [Sphaerobacter thermophilus DSM
           20745]
 gi|269786402|gb|ACZ38545.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 357

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 114/344 (33%), Gaps = 12/344 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-------EES 58
              + ++    + ++   L+  +    P L   II +   P                  +
Sbjct: 9   RWKRWLLVTAAVLVVFWVLWRTRDALLPFLLGAIIAYLLAPAVDLLQRALPQQGRLARLA 68

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++A V  + +  V   +L    + +  E V  +             L  +     
Sbjct: 69  RPLAILLAYVFALAILTVAGFYLVPPLIDQTVEFVRDLPSYWDDVRRESNALMRLYEARV 128

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++  +  ++  +L     T  +T  +       +  G     +   ++ + + LF+  
Sbjct: 129 PEDMRRQIEANLGALGQQVGTAARTAMMVTFGAVTTIIG-----FAAGLLLLPLWLFYVL 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     +    L    +    + I  +V  V+ +   G   + +  G+V G   WL G+
Sbjct: 184 KDQQRGLEWFYGLWPESWRPDVRAIVGMVDDVMSAYVRGQLFLGVVIGVVTGITMWLIGI 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + LGV+     +IP   P      +  + +         + +       + +  L P
Sbjct: 244 PQSLVLGVLAGFFELIPVLGPWLAFVAAALVTLATEPDRILFVGIAFLAIQQLENTFLVP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + G  +++        LV G    G+LG+     L A++  I+
Sbjct: 304 KIQGDAVRVHPALIMVLLVVGGSLWGVLGMIFIVPLTAVLRDIF 347


>gi|226324526|ref|ZP_03800044.1| hypothetical protein COPCOM_02310 [Coprococcus comes ATCC 27758]
 gi|225206974|gb|EEG89328.1| hypothetical protein COPCOM_02310 [Coprococcus comes ATCC 27758]
          Length = 460

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 50/378 (13%), Positives = 120/378 (31%), Gaps = 29/378 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLK-------------GFFAPVLSALIIGFTSWPIYSSFISK 54
            +GI  ++++   ++  + L                  P+L  ++I +   PI       
Sbjct: 43  RKGITFFLVIAACVIFYFLLLRIEDISVGVSKVIDVLKPILYGMVIAYLLNPIVKQIDRW 102

Query: 55  KEE--------------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
                            S +     A V ++ L +     L       ++++V  +    
Sbjct: 103 LIPQLKKKMSQEKAKKVSRSVGVFAALVMLLALILALCNMLIPELYKSIRDMVQTLPGQI 162

Query: 101 QHGIPVPRWLS--DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
              +     +     P G+ A  L  K     Q+             +  +      F  
Sbjct: 163 SDMVTKIISIQKDTSPAGVMARNLLEKGSDALQNWIKQDLLTKVNEVMSNLTVGIINFVS 222

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             L++ + +I  +  LF          + + ++           +++   ++     +G 
Sbjct: 223 EILNFLIGLIVSVYILFSKETFSAQSKKIVYAVFRTDHANMILHLTKKSNEIFGGFIIGK 282

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            I ++  G++      L  +P  + + VI  +  +IP   P      S  L++  +    
Sbjct: 283 IIDSMIIGVLCFFGLTLLKMPYILLISVIVGVTNVIPFFGPYIGAIPSAVLILLNDPIKG 342

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               ++  +   +    + P ++G    L      F ++ G    G +G+ +G    A++
Sbjct: 343 LSFLIFILVLQQLDGNVIGPKILGNSTGLSAFWVVFSILLGGGLFGFVGMIMGVPTFAVV 402

Query: 339 AVIWKESIMAIKENKEKI 356
             I    I  + E K+  
Sbjct: 403 YYIITMLINHLLEKKKLP 420


>gi|49185715|ref|YP_028967.1| hypothetical protein BAS2709 [Bacillus anthracis str. Sterne]
 gi|49477900|ref|YP_036984.1| permease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|165869183|ref|ZP_02213843.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167632559|ref|ZP_02390886.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167637773|ref|ZP_02396052.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170685430|ref|ZP_02876654.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170704514|ref|ZP_02894980.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177649451|ref|ZP_02932453.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190565161|ref|ZP_03018081.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196032646|ref|ZP_03100060.1| putative membrane protein [Bacillus cereus W]
 gi|196043462|ref|ZP_03110700.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|218904032|ref|YP_002451866.1| hypothetical protein BCAH820_2916 [Bacillus cereus AH820]
 gi|225864884|ref|YP_002750262.1| hypothetical protein BCA_2991 [Bacillus cereus 03BB102]
 gi|227814279|ref|YP_002814288.1| hypothetical protein BAMEG_1687 [Bacillus anthracis str. CDC 684]
 gi|229600254|ref|YP_002867167.1| hypothetical protein BAA_2971 [Bacillus anthracis str. A0248]
 gi|254685473|ref|ZP_05149333.1| permease [Bacillus anthracis str. CNEVA-9066]
 gi|254722880|ref|ZP_05184668.1| permease [Bacillus anthracis str. A1055]
 gi|254737930|ref|ZP_05195633.1| permease [Bacillus anthracis str. Western North America USA6153]
 gi|254742897|ref|ZP_05200582.1| permease [Bacillus anthracis str. Kruger B]
 gi|254752244|ref|ZP_05204281.1| permease [Bacillus anthracis str. Vollum]
 gi|254760761|ref|ZP_05212785.1| permease [Bacillus anthracis str. Australia 94]
 gi|270000556|ref|NP_845252.2| hypothetical protein BA_2916 [Bacillus anthracis str. Ames]
 gi|300117750|ref|ZP_07055521.1| permease [Bacillus cereus SJ1]
 gi|49179642|gb|AAT55018.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49329456|gb|AAT60102.1| conserved hypothetical protein, possible permease [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|164715909|gb|EDR21426.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167514322|gb|EDR89689.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167532857|gb|EDR95493.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170130315|gb|EDS99176.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170670790|gb|EDT21529.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172084525|gb|EDT69583.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190563188|gb|EDV17153.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195995397|gb|EDX59351.1| putative membrane protein [Bacillus cereus W]
 gi|196025771|gb|EDX64440.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|218536656|gb|ACK89054.1| putative membrane protein [Bacillus cereus AH820]
 gi|225787450|gb|ACO27667.1| putative membrane protein [Bacillus cereus 03BB102]
 gi|227006643|gb|ACP16386.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|229264662|gb|ACQ46299.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|269850242|gb|AAP26738.2| putative membrane protein [Bacillus anthracis str. Ames]
 gi|298724850|gb|EFI65521.1| permease [Bacillus cereus SJ1]
          Length = 361

 Score =  137 bits (344), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 84  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 140 KNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y++  +P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 357


>gi|126699868|ref|YP_001088765.1| hypothetical protein CD2250 [Clostridium difficile 630]
 gi|254975843|ref|ZP_05272315.1| hypothetical protein CdifQC_11049 [Clostridium difficile QCD-66c26]
 gi|255093230|ref|ZP_05322708.1| hypothetical protein CdifC_11329 [Clostridium difficile CIP 107932]
 gi|255101394|ref|ZP_05330371.1| hypothetical protein CdifQCD-6_11344 [Clostridium difficile
           QCD-63q42]
 gi|255307268|ref|ZP_05351439.1| hypothetical protein CdifA_11807 [Clostridium difficile ATCC 43255]
 gi|255314972|ref|ZP_05356555.1| hypothetical protein CdifQCD-7_11507 [Clostridium difficile
           QCD-76w55]
 gi|255517647|ref|ZP_05385323.1| hypothetical protein CdifQCD-_11096 [Clostridium difficile
           QCD-97b34]
 gi|260683843|ref|YP_003215128.1| hypothetical protein CD196_2107 [Clostridium difficile CD196]
 gi|260687503|ref|YP_003218637.1| hypothetical protein CDR20291_2150 [Clostridium difficile R20291]
 gi|115251305|emb|CAJ69136.1| putative membrane protein [Clostridium difficile]
 gi|260210006|emb|CBA64041.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213520|emb|CBE05245.1| putative membrane protein [Clostridium difficile R20291]
          Length = 364

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 111/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
               +  L     P + A ++ +   P+     SK      +  ++    ++ + I  +L
Sbjct: 30  FFGVISLLMSLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVLIVILISFIL 89

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           F     +  + +LV+++             L      +  + L  K         +   +
Sbjct: 90  FTVPSIVNSLADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTL--KEYGDKIMSVMPKFS 147

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    +  I       G   + + L  I     L    +      + +       +  +
Sbjct: 148 NLLIGSLGGIFSTTFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDF 207

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++ + +   I   F G  + +   G++ G   +       +  G +  +M M+P   P
Sbjct: 208 IIELCQSLNLNIGKYFTGKILDSFIVGVLSGIGLYFLKSEYALLFGTLMGVMNMVPYFGP 267

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +   A  + + +  N   A    ++  I   +    + P +VGG + L    T   +  G
Sbjct: 268 VIGMAPVVIINLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFTILAVTVG 327

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G+ G+ +   +M +I + + E +    +  +
Sbjct: 328 GGFFGIPGMILSAPVMGVIKIYFCEFVNRRHDKIQ 362


>gi|319946630|ref|ZP_08020864.1| membrane protein [Streptococcus australis ATCC 700641]
 gi|319746678|gb|EFV98937.1| membrane protein [Streptococcus australis ATCC 700641]
          Length = 396

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 109/336 (32%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    L F      PV+ + ++ +   PI       +         I  + +  L +
Sbjct: 49  ISFIFTPLLEFGAAVMLPVIISGLLYYLLNPIVDFLERHRV-KRIIAISIVFILIALLIL 107

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   +  +    +          D       S      L    S   
Sbjct: 108 WGLAVAIPAIQRQVLSFMKNLPDYLEKANMTIDDFLD----NKVSPEIKPQLDEWTSQLS 163

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            + T   ++       + S    +     +++I M   +F+  RDG ++  Q+       
Sbjct: 164 ENITSWASSFSARAVNWVSNLIAVASQVIIALIIMPFIVFYLLRDGKNLKGQIIRFLPTK 223

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+   V   + +   G   +AI   L+    + + G+   V LGV    + +IP
Sbjct: 224 IRESAGKVLSDVNTQLANYVRGQITVAIIVALMFILLFKIIGLRYGVTLGVTAGFLNLIP 283

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 284 YLGSFLAMLPALVLGLVAGPEMFVKVVIVFIVEQTIEGRFVSPLVLGSQLNIHPITILFV 343

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+G  + A   V+        K+
Sbjct: 344 LITSGSMFGIWGVFLGIPVYASAKVVISALFEWYKD 379


>gi|190891171|ref|YP_001977713.1| putative permease protein [Rhizobium etli CIAT 652]
 gi|190696450|gb|ACE90535.1| putative permease protein [Rhizobium etli CIAT 652]
          Length = 374

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 102/325 (31%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     V 
Sbjct: 10  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATVG 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + +F + L+ L    + +  +   ++               +     W       
Sbjct: 69  ILIAFVIVFALALMILIPVLISQFNDFAERLPGYISQLQQFITQTQNSLLPDWVKSQAGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 IKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      +    ++I++ + + I     G   + +  G+   +   L G+   + +G
Sbjct: 184 SKVDQWIPRDYVGDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++    +    +      +        F+    L+P LVG
Sbjct: 244 LFAGMISFIPYVGSLVGLILAVGVAIVQFWPDYPWIGLVLAVFFSGQFLEGNILQPKLVG 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L       G +G
Sbjct: 304 SSVGLHPVWLMFALFAFGALFGFVG 328


>gi|22537352|ref|NP_688203.1| hypothetical protein SAG1194 [Streptococcus agalactiae 2603V/R]
 gi|22534224|gb|AAN00076.1|AE014246_11 membrane protein, putative [Streptococcus agalactiae 2603V/R]
          Length = 396

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/361 (14%), Positives = 120/361 (33%), Gaps = 18/361 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++  MI F++ ++++              FL     P++ + ++ +   P+ + 
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         +     ++ L I  +         +++  +  +              
Sbjct: 78  LEKR-GIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D    + +   +   +S   S                I  +A           ++ I  
Sbjct: 137 IDHNPWLKS---YKGEISSMLSNISSQAVSYAEKFSKNILDWAGNLASTVARVTVATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373

Query: 351 E 351
            
Sbjct: 374 A 374


>gi|93005128|ref|YP_579565.1| hypothetical protein Pcryo_0297 [Psychrobacter cryohalolentis K5]
 gi|92392806|gb|ABE74081.1| protein of unknown function UPF0118 [Psychrobacter cryohalolentis
           K5]
          Length = 379

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 163/357 (45%), Gaps = 3/357 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  +  + +   +++ + ++    ++ F  P L A I+ + ++PIY+ F  +   SS F 
Sbjct: 7   KEFIIQRLLAITLLVVLFVLCFQVVQFFIVPALWAAILAYVTFPIYNFFHQRVRFSSNFS 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A I TVS+  +  VPL+   +    E   L+S +V   + G      + D    +     
Sbjct: 67  AAIMTVSITLMIGVPLVAGIFILQQEALSLISNLVYRIKVG---YLDVPDSVKDLPIIGQ 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K +    +             +     +      +       +   ++ LFFFYRDG 
Sbjct: 124 QVKDVLWRINKNPEGTLEAFRLWVQSHLYYGKIAFDVVFSSLAKLGMALMTLFFFYRDGT 183

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+ +Q+     ++           V    R+   G+ + A+ + L+ G  Y+ A  PS +
Sbjct: 184 SLVRQIRQALRNIIGNRIDGYIDSVGTTTRAVVYGIGLTALAQALLAGIGYYFASAPSPI 243

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + ++T I+A+IP G P  +  VS++LL +G+      L LWG + +  VD  +RP ++ 
Sbjct: 244 LMTIVTFIIALIPFGTPFVWGGVSLWLLSQGHTVEGIGLALWGILVISWVDNLIRPIVIS 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G  K+PF+  F G++GG+   G +GLFIGPV++A+   +W+E I   K +       
Sbjct: 304 GATKIPFIIIFIGVLGGLTAFGFVGLFIGPVVLAIGLAVWREWISQHKNDLFAQQEE 360


>gi|296156032|ref|ZP_06838871.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295893538|gb|EFG73317.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 678

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 105/360 (29%), Gaps = 30/360 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++   +   ++  LYF      P+  A+++ F   P+  +    +        V +  +
Sbjct: 27  GLIALAVGVTVVACLYFASAVLIPMTLAILLSFLVAPLADALTRLRLGH-----VASVFA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  +  L      ++ +L + +               ++  G           + 
Sbjct: 82  AVVISVSVIGMLGAVIATQLTDLAAGMPRYQATIERKMETAHNLTIGKLNRFADAAGQAL 141

Query: 130 PQSLKILSETFLKTNGIDFIPR-----------------------FASRFGMIFLDYCLS 166
            ++     +   + +                               A R     +    +
Sbjct: 142 QRATIEPPQPAPQRDSASPGSTRSTANAPAAVPVEVREPVPTPFELARRVLSPAISPLET 201

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              + + +         +  +   L           +     + +   F+    +  G G
Sbjct: 202 AFIVFVVMVVILLQRDDLRDRAIRLFGSRDLHRTTTVMDEAARRLSRYFVSQLGLNAGVG 261

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLW 284
           +V+G+  +L GVPS +  G++ A++ ++P         ++  L          A      
Sbjct: 262 VVIGTGLFLIGVPSPILWGILAALLRLVPYVGIWISATLATALAAAVSPGWSMAIWSLAL 321

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 +V + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 322 FVTVELLVGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRH 381


>gi|325680866|ref|ZP_08160404.1| putative membrane protein [Ruminococcus albus 8]
 gi|324107646|gb|EGC01924.1| putative membrane protein [Ruminococcus albus 8]
          Length = 439

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/362 (12%), Positives = 99/362 (27%), Gaps = 17/362 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--------------ISKKE 56
           ++       I  S+        PV   L+I F + PI                    +K 
Sbjct: 27  VLALFNFGEIFDSIKNFFTVMEPVTWGLVIAFLTNPIMEKTSALLRKFYKTDEQRTKRKG 86

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I  +  + +    +  +    +  + E+                        
Sbjct: 87  FIKIISVIITELLFLGVMTGLVAIVVPELIKSVMEIFDNTGSIVASVQKWINKFLRNYPS 146

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  +        +     I          ++ I   A     +  ++ L +I  +  L  
Sbjct: 147 LEQAATKWLSDFNTDLGTIYDN---VKPMLENILTGAWGVVTVVKNFLLGLIVSVYMLCS 203

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +    I + + S+ +         +      V      G  I +   GL+      + 
Sbjct: 204 KEKLLAQIKKIIISITKKRTCQKIMSVCSQANTVFSGFITGKLIDSTIIGLICFIGLTIM 263

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+P    + V+  +  +IP   P+     +  L++           ++  +        L
Sbjct: 264 GMPYSTMISVLIGVTNIIPFFGPLIGAVPTSLLILLLEPKKCIIFVIFIIVLQQFDGNIL 323

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P ++G    LP       L+      G +G+ +     AL     + S+      K   
Sbjct: 324 GPKILGDSTGLPGFWVLISLLVFGGLFGFVGMVMAVPTSALAYSFLRSSVEEKLRRKNLP 383

Query: 357 SS 358
            S
Sbjct: 384 VS 385


>gi|260549333|ref|ZP_05823553.1| permease [Acinetobacter sp. RUH2624]
 gi|260407739|gb|EEX01212.1| permease [Acinetobacter sp. RUH2624]
          Length = 397

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 127/347 (36%), Gaps = 6/347 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + +++  LY LK    P L A  + +   P+    + K +        I  +
Sbjct: 7   RRIFLLAGIVLLVWVLYLLKPVVIPFLGAFFLAYLFSPLVDVLV-KIKLPRWLAISIVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     V L +L      ++      +             L  I       ++      
Sbjct: 66  GIGVTLTVALWYLVPLIWKQLVYARDSIPAGIHWINA--ELLPWISSTFHVQQMEIDTDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L
Sbjct: 124 MSKAVMDYVQTNYSADSIQAVLLKLAQSGLNFIQIGGTLVLIPIIAFYFLLDWDRMLQNL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A   +I R    V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEATTLQIVRECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          +I         +  +   + +   I   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAIIASLFQFGMDWTHLLLVGVVFMIGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +   F ++ G +  G LG+ I   + A+I V+ K      +++
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLKHLRDNYEKS 350


>gi|152975747|ref|YP_001375264.1| hypothetical protein Bcer98_1995 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024499|gb|ABS22269.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 361

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 121/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     ++ +       ++  V ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLENQ-KVPRNLAVLLLYVFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ ELV  +    + G    + LS         E  T           
Sbjct: 84  VAIGVVVPTVSQQLMELVKNLPNYIKEGKIYIQELSHHR----LFEWLTTQDYISIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +  ++  S     
Sbjct: 140 KNAVEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPRKAVSFLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G      Y++ G+P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCLFVGAFTFIGYFIIGLPYAFILGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + L   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQAVWVILVVTIVQQFESNIISPRIMSSKLNIHPLTVIVL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +     A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKTKR 357


>gi|206578196|ref|YP_002237378.1| hypothetical protein KPK_1525 [Klebsiella pneumoniae 342]
 gi|206567254|gb|ACI09030.1| putative membrane protein [Klebsiella pneumoniae 342]
          Length = 369

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 72/337 (21%), Positives = 135/337 (40%), Gaps = 3/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A I+     P+ +   ++  E +   A++  
Sbjct: 7   TKGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALLTI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  +   PL  +      E+  + SK+   +     V   L           L   +L
Sbjct: 67  VIICLIVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLIAHLPDWARGFLAEHNL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q ++         +G  ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 127 DSAQQIQQQLSDVALKSG-QYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                  L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 186 TLESLP-LSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWVAGLDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +IYL   G ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|260779371|ref|ZP_05888263.1| permease PerM [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605535|gb|EEX31830.1| permease PerM [Vibrio coralliilyticus ATCC BAA-450]
          Length = 358

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 114/353 (32%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      S    +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSQLS-RLGIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    L +V +  L      ++  L++ +         V   L      +   +
Sbjct: 69  SVILVILGFTSLMMVAVFGLVPTIWQQVGNLINDIPSMYTGLQKVIAELPQRYPELDNFQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I+    +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESLVTNAKNQVIVMGETVVKGSLASLVSIAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   +   I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMIAMASGVLP-RNRKLATKVWHEMNDQISNYIRGKVMEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T     + L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  +     ++      G  G+F    L  L+  +W       ++ 
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSNDEDE 352


>gi|297623384|ref|YP_003704818.1| hypothetical protein Trad_1150 [Truepera radiovictrix DSM 17093]
 gi|297164564|gb|ADI14275.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 390

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 117/341 (34%), Gaps = 4/341 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + + L  L   +  +   L AL++ +   P+      ++   +  +++I T 
Sbjct: 14  RALIIVAGVALALYVLNLTRLAWRSFLIALLVAYLVNPLLVRLERRRVPRAVGVSLIMTA 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--LSDIPGGMWASELWTKH 126
            V+ + +  L  L    ++++ +L + +  +        +     +    +       + 
Sbjct: 74  LVLFVIVALL--LLSSILVDLAQLPAALGRSLTQLPSWLQSEDPPEWLQNLNLLADNQQE 131

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L    S    +           + R   +     +    ++  + + + F      +I Q
Sbjct: 132 LLVFWSDLRQNVLNWLELNARTLVRQIIQGTQGLVTGFFNLFILFVFIAFTMAGFPTIRQ 191

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  L         + +   +   +        + A    +V  +   L GVP+ +ALG+
Sbjct: 192 SLYELFPERRQPLARDLGMKLDAAVGGYLRAKVLEAGIMFVVSATVLSLLGVPNPLALGL 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I A++  +P   PI  T +   + +  +   A    L       I    L P L+   + 
Sbjct: 252 INAMLNPVPYIGPIIATMIEALVALTVSWQLALITALVMFAIEQIDGNILGPMLLSKGVD 311

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +  +     +  G    G  G+     + A + +++++   
Sbjct: 312 VHPVAILSAVTAGGALFGFWGVITAIPVTAFLQLLYRDYYK 352


>gi|154245378|ref|YP_001416336.1| hypothetical protein Xaut_1431 [Xanthobacter autotrophicus Py2]
 gi|154159463|gb|ABS66679.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 606

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 98/352 (27%), Gaps = 22/352 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ +     I+  LY  +  F P+  A+++ F   P+       +   +  +  +  V+
Sbjct: 20  RLVTFFAAIAIVTVLYLGRDVFVPIAVAILLAFVLAPVIMVLRRIRIPRTAAVVTVVLVT 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L       L     L++ +LV+++     +     + L +   G    E     +  
Sbjct: 80  FLGLMA-----LGGMIALQVTDLVAELPQYRMNMRDKIKSLKEAASGSGTFERTMDLVQD 134

Query: 130 PQSLKILSETFLKTNGIDF---------------IPRFASRFGMIFLDYCLSIIFMIIAL 174
                   +                              S      L    +   + I +
Sbjct: 135 LSREIDGPQAGQGLAAGATDGRPVLVEVHEPPPGTLGTISAVVTPLLHPLATFGIVFIFV 194

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F       +  +   L                   +   FL    +    G V+G   W
Sbjct: 195 LFILLQREDLRNRFVRLAGAHDLQRTTAALDDAGSRLSRFFLAQVALNASFGAVIGLGLW 254

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           + GVPS    G+  A++  +P           + + L +               +   +V
Sbjct: 255 IIGVPSPFLWGLAAAVLRFVPYIGAAIAAALPIGLALAVDPGWTMVLSTVALFLVVEPVV 314

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              + P L G    L  +             G +GL +   L   + V+ + 
Sbjct: 315 GHVIEPLLYGRSTGLSPVAVIAAATFWTWLWGPIGLLLSTPLTLCLVVLGRH 366


>gi|294651082|ref|ZP_06728419.1| membrane lipofamily protein [Acinetobacter haemolyticus ATCC 19194]
 gi|292823031|gb|EFF81897.1| membrane lipofamily protein [Acinetobacter haemolyticus ATCC 19194]
          Length = 398

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 127/348 (36%), Gaps = 6/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + ++L  LY LK    P + A +I +   P+    + K +        +  +
Sbjct: 7   RRIFILAGIALLLWVLYLLKPIVIPFVGAFLIAYFFSPLVDVLV-KIKLPRWLAISVVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     V L FL      ++      +            +L  +        +      
Sbjct: 66  GIGVTLTVVLWFLAPLVWKQLIYARDSIPAGIHWVNAT--FLPWMSETFDLVPMEIDTDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + +    +T   ++ I       ++ G+ F+     II + I  F+F  D   + Q L
Sbjct: 124 ISKVVMEYVQTNYSSDSIQTFALRLAQSGLNFIQIGGIIILIPIISFYFLLDWERMLQSL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A   KI R    V+ +   G  ++ +  G++      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEASTLKIIRECHSVLGAFVKGQFLVMLLLGVIYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +      +     +   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVIATLFQFGLDWTQLLLVGAVFLVGQMVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ I   + A+I V+ + +    ++++
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLRHARDNYEKSR 351


>gi|227534424|ref|ZP_03964473.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227187931|gb|EEI67998.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 405

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 114/336 (33%), Gaps = 6/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I ++    L FL     P + A I+ + + PI +    K      +   +  + ++ L  
Sbjct: 54  IAWVFQPVLDFLGIIAPPFIFAGILFYLTVPIINRLE-KFGLHRGWAIGLLFIVLIGLLA 112

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             LL        ++  +V                L+D       + L    L+   +   
Sbjct: 113 WGLLRFIPAVSNQITSIVHSAPQIFDEIGKWLDNLND-----QQNILSQHDLNEIAAEVQ 167

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T  +   +            I  +  ++I    I LFF  +DG   +  +  +    
Sbjct: 168 SFFTGKQGAFVTGTISQLQNLIGIVGNVVITISTAPIILFFMLKDGDKFTPMVLHIVPTK 227

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K++   + + + S   G   +A+   ++    Y + G+   +  G++   + +IP
Sbjct: 228 LRRSVKQMLHEMNEKVGSYVQGQITVALCVAVMFMVGYSVIGLRYGLIFGLLACPLNLIP 287

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + +    +      + +   IE  I  + + P ++G  ++L  +     
Sbjct: 288 YFGSALAMIPPLIMGALTSPRMILAVIIVFFIEWLIETQVISPLVMGSKLELHPITIVVV 347

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      GL+G+ +G    A++ ++        ++
Sbjct: 348 LLTAGNLFGLVGVILGIPGFAVLKIVVTRFFSWYQQ 383


>gi|153213247|ref|ZP_01948659.1| permease PerM, putative [Vibrio cholerae 1587]
 gi|124116047|gb|EAY34867.1| permease PerM, putative [Vibrio cholerae 1587]
          Length = 354

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELAHLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVISNAKNKVLGMGESVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMLRMASGILP-RNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G  G+F    L  L+  +WK      +E
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEE 351


>gi|262203276|ref|YP_003274484.1| hypothetical protein Gbro_3393 [Gordonia bronchialis DSM 43247]
 gi|262086623|gb|ACY22591.1| protein of unknown function UPF0118 [Gordonia bronchialis DSM
           43247]
          Length = 426

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 104/323 (32%), Gaps = 14/323 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q I+    +++++  L  L     P+L A+I+    WP      +         +V+  +
Sbjct: 56  QIILVVATLWVVMWLLAKLWVILLPILLAIIVCTILWPPVRWMRNH-GVPPAAASVVMML 114

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F   +  +    + +  +L ++     +                W          
Sbjct: 115 VAVGVFAGVIGAIVPSVVDQAPDLANRATDGVKKLQD------------WVQGPPLNVRD 162

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + + T    +    I +             ++I   ++ +FFF +DG      L
Sbjct: 163 EQLDNVVHTITDKLQSSSSTIAQGVFSGVGTATSLLVTIFSALVLVFFFLKDGPKFVPWL 222

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    ++  ++   +   +        +++  +  ++G    +  +P    L VIT
Sbjct: 223 ARNLGKPTGSHVGEVLNRMWASLGGFIRTQALVSFVDAALIGIGLVILDIPLAGVLIVIT 282

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP     ++     +  L+   + +A  +         +    L+P+L    + L
Sbjct: 283 FLGGFIPIVGAFVAGALAVLIALVSNGLTSALIVLAIILAVQQLEGNVLQPWLQSKSMDL 342

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             +     +  G    G+ G F+
Sbjct: 343 HAVIVLLSVTLGGTLFGITGAFL 365


>gi|299769104|ref|YP_003731130.1| hypothetical protein AOLE_04300 [Acinetobacter sp. DR1]
 gi|298699192|gb|ADI89757.1| hypothetical protein AOLE_04300 [Acinetobacter sp. DR1]
          Length = 397

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 127/347 (36%), Gaps = 6/347 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    + +++  LY LK    P + A  + +   P+    + K +        +  +
Sbjct: 7   RRILLLAGIVLLVWVLYLLKPVVIPFIGAFFLAYLFSPLVDVLV-KIKLPRWLAISVVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     + L +L      ++      +             L  +       ++      
Sbjct: 66  GIGVTLTIALWYLVPLIWKQLVYARDSIPAGIHWINA--ELLPWVSSTFNVQQMEIDTDQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L
Sbjct: 124 MSKAVMDYVQTNYSADSIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A   +I      V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEATTLQIVGECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +  +   + +   I   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVIASLFQFGLDWMHLLLVGVVFMIGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +   F ++ G +  G LG+ I   + A+I V+ K      + +
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLKHLRENYERS 350


>gi|282879126|ref|ZP_06287885.1| membrane family protein [Prevotella buccalis ATCC 35310]
 gi|281298768|gb|EFA91178.1| membrane family protein [Prevotella buccalis ATCC 35310]
          Length = 372

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 122/357 (34%), Gaps = 13/357 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +     +++F +L  + +L G   P   A +  +  +P+      K          +I  
Sbjct: 13  RIASVLLLIFFVLYLVNYLSGVLLPFFVAWLFAYLLYPLVKFVQYKMHVKVRAIAIIITM 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V  +    +  +    + +  +L   +              S   G   +  +     
Sbjct: 73  LAVAVVIGGLVYAIIPPMIEQFGKLNDILNNWINQ-----STHSSDLGSYISQWITKNRT 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +K    + +   G+  +     +   + +   ++ +  ++  FF  +D   ++  
Sbjct: 128 EIESFMKSKDFSDILKTGMPKVFTLLGQTASVVIS-IIASLITLLYTFFILQDYEFLTDN 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +       +W+++ + V + + +   G  ++++  G++ G    +   P  +ALG++
Sbjct: 187 WIRIFPKKNRPFWEELMKDVERELNNYIRGQGLVSLILGILFGIGLSIINFPMAIALGIM 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              M ++P    ++   +    +       +          L   I   I D  L P ++
Sbjct: 247 MGFMNLVPYLHTLALVPMVFLSMLKAADTGQNFWIVFGLAMLVFLIVQVISDTVLTPKIM 306

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G  + L        L      +G +GL +   L  L+   W++ +   K+  E    
Sbjct: 307 GKAMNLNPAILLLSLSVWGTLLGFIGLIVALPLTTLLIAYWQKYVTREKKQDETTQE 363


>gi|154486832|ref|ZP_02028239.1| hypothetical protein BIFADO_00664 [Bifidobacterium adolescentis
           L2-32]
 gi|154084695|gb|EDN83740.1| hypothetical protein BIFADO_00664 [Bifidobacterium adolescentis
           L2-32]
          Length = 507

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 107/348 (30%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  ++L   +     ++     V+ +L +     P+    +       +F ++
Sbjct: 49  RALLYIAIAIVLLSFCWRSWGKIEYLIIDVVISLFLALAVEPVVIPLVKH-GWKRSFASI 107

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A + +  L  V         + ++  L + +    Q                  ++   
Sbjct: 108 FALLMLGVLLCVMFGLFGNLFVQQVIALCNGLPALYQQICDF------------VAQYTD 155

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    SL       ++T+ +      A      F  + L+++ +I+  F+    G  +
Sbjct: 156 FKLPEINSLGGEILKNIQTSWVTDFAGTAISTVSGFFSFLLNLMTVIMTTFYISAAGPKL 215

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S      I+A+              VP  + L
Sbjct: 216 RRAACQWMAPSAQRRFLFVWTVSQTQISSFLFSRAILAVLNAFFTSICLMALHVPYWMPL 275

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++      ++ A  +  +  +   I +    P +  
Sbjct: 276 ALFCGVVSQFIPMLGTYIGGALPVLFAWGSCGLWQAIAVVAFICVYQQIENLIFAPKISR 335

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G +G F+   ++A I  I +       
Sbjct: 336 RTMDVNDAVAFLAVLAFGSLFGAIGAFLALPIVASIQTIARTYTKRYD 383


>gi|283458312|ref|YP_003362931.1| putative permease [Rothia mucilaginosa DY-18]
 gi|283134346|dbj|BAI65111.1| predicted permease [Rothia mucilaginosa DY-18]
          Length = 428

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 105/346 (30%), Gaps = 11/346 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLS---ALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           G +  + + + L + Y      A V     A+ I     PI     S          +  
Sbjct: 90  GFLMTVGVGLALFAYYIFNNVGALVGWVTGAIFIALGLDPIVRRLESW-GIKRGIGVIAV 148

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
                      ++ +      +  + V       Q+ I                + +   
Sbjct: 149 LAGFAGAVTGLVMTIGPIISEQASKFVQYAPGIYQNTID-------SDWYHELDQRFNIS 201

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +++    E+   ++ ++         G         +I ++    +F     +I  
Sbjct: 202 TWVNENVPKFLESTFSSSQVNSFMSSLVSAGSTLAQSVTGVIIVLFLSLYFLTSMDTIKA 261

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L         K I+  + + + +  +G  ++A+    V        G      + +
Sbjct: 262 WGVRLAPASKRVRVKYITDKITESVGNYVMGQALVAVLNAFVAFLIMAFLGFSFPQLMAL 321

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+A IP    +    ++  +L+      A    +   + L +    + P ++   + 
Sbjct: 322 VVMILAFIPLVGGVIALILTSLILLTQGWSLALWFAVAYFLYLQVEAYLISPRIMARAVS 381

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P       +  G    G+LG  I   + A + ++ +E  +  ++ 
Sbjct: 382 VPAGVAIISVAAGGALWGVLGALIAIPVAASMLILVREVFIPRQDQ 427


>gi|261380754|ref|ZP_05985327.1| acetyltransferase, GNAT family [Neisseria subflava NJ9703]
 gi|284796473|gb|EFC51820.1| acetyltransferase, GNAT family [Neisseria subflava NJ9703]
          Length = 356

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   ++   +  LY L     P + A ++ +   P+      K+       ++I    
Sbjct: 12  WIIMACVIAAFIWLLYALGDVLTPFIVAAVLAYVLNPLVEWLQLKR-IRRAPASMIIMAL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  +L +    + +   L  ++                +P     S  + +    
Sbjct: 71  ALLILLSLVLIIVPMLLNQFNNLAERLPQIVGFVQNKL-----LPWLNSISGDYIQIDQE 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                + S T   +N +        R     +    +++   + L++F  D    S  + 
Sbjct: 126 SIIAWLQSHTDELSNTLKAWIPTLMRQSGNVISGVSNLVLWPLLLYYFLLDWKRWSSGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +IS  + +V+     G  ++ +  GLV G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIETYTRISGNMDEVLGEFLRGQLMVMMIMGLVYGLGLMLVGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++        G+      ++    +  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATIAALLQYGSWQGLLMVWAVFGVGQFLESFFITPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   + MG +G+  G  L A+  V+ +E
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLRE 342


>gi|38234671|ref|NP_940438.1| putative integral membrane protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200935|emb|CAE50652.1| Putative integral membrane protein [Corynebacterium diphtheriae]
          Length = 426

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/339 (15%), Positives = 111/339 (32%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++I+ I  +  +     +     PV+ A+++    WP      SK +       VI
Sbjct: 41  WALRFIIVAIASIMAWRGLGTVWHGVLPVILAILLSTVLWPPVRWLRSK-KVPPALAVVI 99

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    +       +      + K+LV +        +             WA      
Sbjct: 100 VILGFFGIIGGIFAAMAPSVGAQSKDLVDRASDGINRLLD------------WAENSPFD 147

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      + + T         I               +++I M+I  FFF +DG    
Sbjct: 148 IDTSQIDGYLSNITNTLKEQSSNIANGVFTGLSTASTILVTMILMLILSFFFLKDGTRFL 207

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  L       +  ++   +   +        I+++ + +++G    +  VP  + L 
Sbjct: 208 PMVRRLTGPNVGWHLTEVLTRIWNTLAGFIRAQAIVSLVDAVLIGVGLLILKVPLALVLA 267

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+T     IP     +      +  L+   + NA  + +       I    L+P L    
Sbjct: 268 VLTFFGGFIPIVGAFTAGALAVVIALVSNGMSNALMVLVLIIAVQQIEGHILQPVLQSKA 327

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A +AV+ +
Sbjct: 328 MNLHAAVVLLSVTVGSTLFGVIGAFLAVPVAATLAVLVR 366


>gi|254433616|ref|ZP_05047124.1| conserved domain protein [Nitrosococcus oceani AFC27]
 gi|207089949|gb|EDZ67220.1| conserved domain protein [Nitrosococcus oceani AFC27]
          Length = 537

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 92/299 (30%), Gaps = 9/299 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             + L+S+Y L+    P ++ +++ +   P+      K   S T    + T   + +  +
Sbjct: 4   FLLFLISVYLLREILLPFVAGMVVAYLIDPLCDWLERK-GCSRTAATSLVTAGFILVVSM 62

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL L      E+  L+  +                    +   +               
Sbjct: 63  VLLLLVPLLRSEIVHLIETLPSLIARAQD------STWPWLQLLQERWSIDMSQIQNAAK 116

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +  +    I          G+   +    +  M +  F+  RD   +  Q+DSL     
Sbjct: 117 DQAGILIKWIGKTVGTILSSGLALANLLSLVFIMPVVAFYLLRDWDKLIAQIDSLLPRKH 176

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++  +++  V+     G   + +  G        L G+   + +G++  +++ IP 
Sbjct: 177 APVIREQVKLIDTVLSGFIRGQVSVCLLLGTFYAVGLALIGLDFGLMVGMLAGLLSFIPY 236

Query: 257 GAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I      I L             +     I   +    L P LVG  + L  +   
Sbjct: 237 VGTIVGFIAGIGLAFVQFSEWTPIFLVAGVFVIGQVVEGNVLTPRLVGNRVGLHPVMVI 295


>gi|187919985|ref|YP_001889016.1| hypothetical protein Bphyt_5287 [Burkholderia phytofirmans PsJN]
 gi|187718423|gb|ACD19646.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 677

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/360 (10%), Positives = 106/360 (29%), Gaps = 30/360 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +   ++  LYF      P+  A+++ F   P+ ++ +  +        V +  +
Sbjct: 27  SLISLAVGVTVVACLYFASAVLIPITLAILLSFLVAPLANALMRLRLGH-----VASVFA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI---------------- 113
            + + +  +  L      ++ +L + +                +                
Sbjct: 82  AVVISVSVIGMLGAVIATQLTDLAAGMPRYQATIEQKMETAHSLTIGKLNRFASAAGQAL 141

Query: 114 -------PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                  P         ++  +   + +  +        +      A R     +    +
Sbjct: 142 QRATVEPPQPAPQRGPASRDSARSTASEPAAVPVEVREPVPTPFELARRVLSPAISPLET 201

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              + + +         +  +   L           +     + +   F+    +  G G
Sbjct: 202 AFIVFVVMVVILLQRDDLRDRAIRLFGSRDLHRTTTVMDEAARRLSRYFVSQLGLNAGVG 261

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLW 284
           +++G+  ++ GVPS +  G++ A++ ++P         ++  L          A      
Sbjct: 262 VIIGTGLFMIGVPSPILWGILAALLRLVPYVGIWISATLATALAAAVSPGWTMAIWSLAL 321

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 +V + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 322 FVSVEVLVGQIVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRH 381


>gi|229097430|ref|ZP_04228392.1| hypothetical protein bcere0020_26730 [Bacillus cereus Rock3-29]
 gi|228686241|gb|EEL40157.1| hypothetical protein bcere0020_26730 [Bacillus cereus Rock3-29]
          Length = 348

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 120/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLENK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +   + A+   +    +   K  +    
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKRNNRK 348


>gi|330951703|gb|EGH51963.1| hypothetical protein PSYCIT7_10049 [Pseudomonas syringae Cit 7]
          Length = 348

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 149/348 (42%), Gaps = 3/348 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  M L   PL++L +     +++    +      G+P P        G+       
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDP---PQWLAGIPLVGERL 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L      +  +        +  +  +            L +   I+  FFFYRDG  +
Sbjct: 119 VALWTTIDQQGAAFMATLKPHLGQVGNWVLARSAQIGSGILELTLSIVFAFFFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + L
Sbjct: 179 AAFVLSLLERLIGEGAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +  
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERAR 346


>gi|209548699|ref|YP_002280616.1| hypothetical protein Rleg2_1096 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534455|gb|ACI54390.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 374

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 102/325 (31%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +V LY       P ++ + I +   P+      +   S     V 
Sbjct: 10  LKRQIFFWLAVLVFFIVFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGMSRMMATVG 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ +  F + L+ L    + +  +   ++               +     W       
Sbjct: 69  ILIAFVITFALALMILIPVLVSQFNDFAERLPGYISQLQQFIDNSKNSLLPDWVRSQAGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 LKDNFSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      + +  ++I+  + + I     G   + +  G+   +   L G+   + +G
Sbjct: 184 AKVDQWIPRDYISDVRQIASEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++    +    +      +        F+    L+P LVG
Sbjct: 244 LFAGMISFIPYVGSLVGLVLAVGVAIVQFWPDYPWIGLVLAVFFSGQFLEGNILQPKLVG 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L       G +G
Sbjct: 304 SSVGLHPVWLMFALFAFGALFGFVG 328


>gi|294497307|ref|YP_003561007.1| hypothetical protein BMQ_0516 [Bacillus megaterium QM B1551]
 gi|294347244|gb|ADE67573.1| Conserved Hypothetical Protein [Bacillus megaterium QM B1551]
          Length = 380

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 118/335 (35%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI++    F+K    P++ A I  +   P+      K         ++  + ++    
Sbjct: 40  IGFILIPISIFIKTIALPIILAGICFYLFNPLVDFLERK-GVKRIISILVLYIVIIGALA 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      ++  L+  +             LS+        +     L        
Sbjct: 99  IIISSVIPPLKNQVDRLIDNIPELTHDVQHAVTNLSNNRYVEQGLQSANTDLDKLSKDAS 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +     I  F         +  LS+  +   LF+  +DG ++   +  L  + 
Sbjct: 159 KHLSKYVSGFSSGIVNFVGTIT----EIILSVAVLPFILFYLLKDGKNLPNYIVKLLPNR 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +  K I   +   + +   G   +AI  G++L   Y + G+   + L +I  +  ++P
Sbjct: 215 SRSEAKFILADMNHALSAYIRGQIFVAICIGVLLFIGYLIIGLDYALLLAIIAMVTNVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     +I +    + F    L +  A+   +  K + P ++G  + +  +   F 
Sbjct: 275 YLGPIIAIIPAIIIAFITSPFMLVKLAIVWAVVQLLEGKVISPQIMGRSLDIHPITVIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++      G++G+ +     A++ VI       I+
Sbjct: 335 ILTAGNLFGIIGIILAVPGYAVLKVIITHIYQFIR 369


>gi|254563916|ref|YP_003071011.1| hypothetical protein METDI5602 [Methylobacterium extorquens DM4]
 gi|254271194|emb|CAX27206.1| Conserved hypothetical protein, putative inner membrane protein,
           putative permease [Methylobacterium extorquens DM4]
          Length = 359

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 5/329 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLFLF 82
           Y L GF   ++ A+++    WP+ +    +            + T  V  + ++P+  L 
Sbjct: 32  YILSGFLRALVWAVVLAIALWPLLNRAHRRFPPGRHNILWPAVFTGLVALVLLLPIGVLA 91

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E  +L++    A ++GIPVP +++ +P G  A   W         L       L 
Sbjct: 92  VEAGREAHDLLAYAREAERNGIPVPDFVARLPYGAAAVTEWWNAHLAHAGLAHELSERLN 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T     + R     G   +   +   F ++ALFF +R+G ++  Q       LF    ++
Sbjct: 152 TTSNRDLTR---SLGAGLVHRVVLFGFCLLALFFLFREGDTVIAQSLRASHRLFGPRGER 208

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++R +   +  T  G+ ++ IGEG +LG  Y  AGVP  V  G +TA+ AMIP GAP++F
Sbjct: 209 VARQMVASVHGTVDGLVLVGIGEGFLLGIVYAFAGVPHPVLFGALTAVAAMIPFGAPLAF 268

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +  LL  G    A  +   G +  F+ D  +RP L+GG  +LPFL    G++GGV T
Sbjct: 269 GLAAALLLAGGAAVPAAIVVAAGFVVTFVADHFVRPALIGGTTRLPFLWVLLGILGGVET 328

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            GLLGLF+GP +MA + ++W+E     +E
Sbjct: 329 FGLLGLFVGPAVMAALILLWREFTEGSQE 357


>gi|21223403|ref|NP_629182.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|9967657|emb|CAC05875.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
          Length = 465

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 92/321 (28%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +           ++AL+I     P  +    +          +  
Sbjct: 91  WRLLVLAGTVWVLMRVISAVQLVVLAFVAALLITALLQPAVAWL-RRHGVPRGPATALTA 149

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +   F+ +  M  +  L  +V                     W         
Sbjct: 150 ILGFVVMGLIGWFVTWQVMENIDNLSDQVQDGIDELRN------------WLLNSPFHVT 197

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         D I         + ++    I+    +  F   DG  I Q 
Sbjct: 198 DKQINEIAKNLRDAVGANTDQITSAGLEGVTVVVEALTGILLAAFSTLFLLYDGKRIWQW 257

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  I+A+ + + +G   +   VP  V L V 
Sbjct: 258 SLKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVF 317

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   +F A    +       I    L+PF++G  ++
Sbjct: 318 IFLFAFIPLVGAVVSGALAVVVALVTQGVFAAVMTLVVVLAVQQIEGHILQPFILGRAVR 377

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 378 VHPLAVVLSVAAGGMVAGIGG 398


>gi|110679325|ref|YP_682332.1| hypothetical protein RD1_2044 [Roseobacter denitrificans OCh 114]
 gi|109455441|gb|ABG31646.1| membrane protein, putative [Roseobacter denitrificans OCh 114]
          Length = 355

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 117/338 (34%), Gaps = 14/338 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++LV+L FL     P +    I +   P+      +   S      I T+  + +F
Sbjct: 14  IATAVLLVALMFLGDVLLPFVLGGAIAYFLDPVADRLE-RLGLSRVAATAIITLCGLLVF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +  L +    + +  +LV+      ++                         +      
Sbjct: 73  FIVALLVIPALVEQAVKLVNVAPEYARNITAFL----------TERFPTLLDENSAMQRS 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + S      +    +   A       L+  + +I + +   +   D  +++ ++DSL   
Sbjct: 123 LHSLGETIQSRGAELLETALSSAASLLNVLILLIIVPVVAVYLLLDWDNMTAKIDSLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + +V+ S   GM  + +  G     A  +AG+   + +G I  ++  I
Sbjct: 183 DHAPTIRQLASQIDQVLASFIRGMGTVCLILGTYYAIALMVAGLQFGLVVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G   +   +    A+   +    + P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGEWMSVGIIVGIFALGQVLEGNVITPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               L       G +G+ +   L A + V+ +  +   
Sbjct: 303 LLLALSVFGALFGFVGMLVAVPLAAALGVLARFGVAQY 340


>gi|311114317|ref|YP_003985538.1| hypothetical protein HMPREF0421_20433 [Gardnerella vaginalis ATCC
           14019]
 gi|310945811|gb|ADP38515.1| hypothetical integral membrane protein in UPFO118 [Gardnerella
           vaginalis ATCC 14019]
          Length = 533

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 113/348 (32%), Gaps = 19/348 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      + +M  +I   + + ++F  G        V+ ++ I     P+    I     
Sbjct: 37  RPPDWLSRALMYAVIAAFVAIFVWFAWGNIAFIVFDVVVSIFIALAIEPLVVRLIKH-GW 95

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S  F ++ +   ++ + I+ L+      + +   +V  +                     
Sbjct: 96  SRAFASLASLFGLLVIVILLLVLFGNLFVQQAVSMVLGLPDLYNQFAHF----------- 144

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    + + + L +     ++T+ +      A       L   L ++ +++  ++ 
Sbjct: 145 -VLNSTGFKMPNIEQLGMEILKHVQTSWVVDFAGQAINTTWGLLAVLLDLLTILMVTYYI 203

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G S+ + +  L        +  I  +V + I S     TI+A               
Sbjct: 204 SAAGPSMRRSVCRLLNPKSQRRFLFIWSVVQEQISSFLFSRTILAAINATGTAIFLIFMN 263

Query: 238 VPSHVALGVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           VP  + L +   I++  +P     +      ++        +A  + ++  I   I +  
Sbjct: 264 VPYWLPLSLFCGIVSQFVPTIGTYLGGALPILFAWGSNGFGSAIAVLIFVTIYQQIENMV 323

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + P +    + L     F  ++      G LG F+   + A +  I K
Sbjct: 324 ISPKISEKTMDLNPAVAFLSVLIMGAVFGALGAFLALPVTASLQAILK 371


>gi|296111044|ref|YP_003621425.1| transport protein [Leuconostoc kimchii IMSNU 11154]
 gi|295832575|gb|ADG40456.1| transport protein [Leuconostoc kimchii IMSNU 11154]
          Length = 370

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 104/322 (32%), Gaps = 10/322 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKE----ESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P+L A  + +   PI       K            ++  +  + +    ++ L
Sbjct: 40  FISTVFVPLLVAGFLYYVLKPILKLVQKIKIHGWQIPRQAAVILTFLFFLSVIAGVIVVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q          +       +      LS   +    +    
Sbjct: 100 VPTLVREITNLITALPGFAQDMQRFTTETINSKWFENLN------LSINVNQVRDAVGKY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +                  ++++ + + LF+   DG  +   +  +          
Sbjct: 154 AASFLTITAGTLGSIVSTVTSVTINLVTIPVVLFYMLSDGERLVPAIKKMFPERHADKIT 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  +   I     G  I  +  G+ +   Y++ G P    L VI  I  ++P   P  
Sbjct: 214 ELTTKMDNTIERYISGQAIEMLFVGVTMAIGYFIIGQPYAWLLAVIAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      + +   +   +    + P ++G  + +  L     L+    
Sbjct: 274 GVIPALLVASTQSWEQCLFVLIVMTVVQQLDGNFIYPNVIGKSLAIHPLTIMILLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G++G+ +   + A+  VI K
Sbjct: 334 LWGIVGMILVVPVYAVFRVIIK 355


>gi|30021024|ref|NP_832655.1| hypothetical protein BC2907 [Bacillus cereus ATCC 14579]
 gi|206971945|ref|ZP_03232894.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218234607|ref|YP_002367635.1| hypothetical protein BCB4264_A2927 [Bacillus cereus B4264]
 gi|218897990|ref|YP_002446401.1| hypothetical protein BCG9842_B2316 [Bacillus cereus G9842]
 gi|296503446|ref|YP_003665146.1| hypothetical protein BMB171_C2614 [Bacillus thuringiensis BMB171]
 gi|29896577|gb|AAP09856.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206733330|gb|EDZ50503.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218162564|gb|ACK62556.1| putative membrane protein [Bacillus cereus B4264]
 gi|218540616|gb|ACK93010.1| putative membrane protein [Bacillus cereus G9842]
 gi|296324498|gb|ADH07426.1| hypothetical protein BMB171_C2614 [Bacillus thuringiensis BMB171]
          Length = 361

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 84  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 140 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 357


>gi|196042276|ref|ZP_03109555.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196026895|gb|EDX65523.1| putative membrane protein [Bacillus cereus NVH0597-99]
          Length = 361

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 84  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 140 KNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 357


>gi|326201133|ref|ZP_08191005.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
 gi|325988701|gb|EGD49525.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
          Length = 349

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 112/330 (33%), Gaps = 5/330 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              +   +  +     P   A +I +  +P+   F  K     +   ++  V +    I 
Sbjct: 21  AVFVYFYIDKIIKILFPFFIAALIAYIIYPMVIRFERK-GVKRSVSIIMIYVFIALTLIF 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             +++    +   KEL   +                              + +  +    
Sbjct: 80  FGIYIMPEVLSNAKELFKTLPNITNSYQEYFNNCISRIKASKWPPEVKNLIFNEIN---- 135

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             +         I +         +   L+I+  +I  ++F +D  ++      L     
Sbjct: 136 YGSGFLQIYAGRIMKKTLSVLASSIVIILNIVLSMIIAYYFLKDAETLKNSTLMLVPKKM 195

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              +    R +  +      G    A+  G +     +LAG+     LG++  +  MIP 
Sbjct: 196 RNDFINTGRELNAIATHFIQGQLTTALIVGSMETIGLYLAGIKYPFVLGLLGGVANMIPY 255

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P      ++ + +  + + A    L   +   I +  + P ++ G + L  + T   +
Sbjct: 256 FGPFLGAIPAVAVALLQSPYKAALAALVFIVVQQIDNAFISPKIIEGKLGLHPVTTIIAV 315

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + G    G++G+ IG  + A++ VI+K++I
Sbjct: 316 LVGGEFFGIIGMLIGVPVAAMLKVIFKKAI 345


>gi|116692369|ref|YP_837902.1| hypothetical protein Bcen2424_4274 [Burkholderia cenocepacia
           HI2424]
 gi|116650369|gb|ABK11009.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           HI2424]
          Length = 356

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 161/344 (46%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              Q     +   ++L++L+ ++ F   +  A +I    WP+   F          T +A
Sbjct: 16  RVQQIARVALYAALLLLALWVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T ++  L ++P+         +  +L   +     +GIP+P  +S +P G      W
Sbjct: 76  TVITAAISLLVVLPVAVATTQAFAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEW 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + T +     +    F  +FG       L   FM++ LF   R G  
Sbjct: 136 WQANLGHP---LHAATAMHGVNGEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHK 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F     ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    
Sbjct: 193 LSGALLQGARRAFGRNGAELIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAAL 252

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++TA+ AM+P  AP+ F   +++L ++G    A  +   G I +F+ +  +RP L+GG
Sbjct: 253 LGLVTAVAAMLPFCAPVVFCGAALWLFVQGATMWAVVVAALGFIVVFVAEHFVRPVLIGG 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E I 
Sbjct: 313 STRLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|296155958|ref|ZP_06838797.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295893464|gb|EFG73243.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 650

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 100/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +   +++ +LYF +    P+  ++++ F   P+      +          IA + 
Sbjct: 24  GLASVITGVVVVCALYFGRAVLIPITLSVLLSFLLAPLVQML-RRLHMGQLPSIFIAVLF 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +     +    +    +L    V   Q    V          + +          
Sbjct: 83  ALASLLAVGALIGAQLVQLAGDLPQYQVAIEQKIETVQEKTVGRADSLMSRAAVALQRVA 142

Query: 130 PQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMIIALFF 176
           P        T         +              + A R     +    +   +++   F
Sbjct: 143 PSRPNPPRPTGRAARNAPAVPQPVEVHEPSPTPLQLAQRALSPAIAPIETTFIVLVVTIF 202

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G V+     + 
Sbjct: 203 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSRYFVAQLGVNLSAGGVIAIGLAII 262

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++++L   I+     A    +   +   +  +
Sbjct: 263 GVPGALLFGVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVYTLILFIVVDLVAGQ 322

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 323 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCVVTLGR 371


>gi|269101993|ref|ZP_06154690.1| permease PerM [Photobacterium damselae subsp. damselae CIP 102761]
 gi|268161891|gb|EEZ40387.1| permease PerM [Photobacterium damselae subsp. damselae CIP 102761]
          Length = 359

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 109/343 (31%), Gaps = 12/343 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +   MI+    +++YF     AP+L A+++ +          ++     T 
Sbjct: 10  KRRFSDPHAVSLVMILLGGFLTIYFFGHLIAPLLVAIVLAYLLEWPVMRL-NRLGMPRTI 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  V    L ++ +  L      ++  L++ V             L +         
Sbjct: 69  AVAVVLVLFAGLMVMAIFGLVPTIWHQVSNLLADVPNMFNGFQNYISSLPERYPEFVQPH 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +   +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 QVGMFMDTLKGKVLGLGESVVKGSLSSLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  L          K+   + + I +   G        G+V    + L G+   
Sbjct: 181 EEMLNMLRGLLP-KNRRLASKVGVEMNEQISNYIRGKVTEIFIVGIVSYITFVLLGLQYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V LGV+  +  +IP     + T     + L   G       L +   I   +    L P 
Sbjct: 240 VLLGVLVGLSVLIPYIGAAAVTVPVAMVALFQWGLTPEFWWLLVAYGIIQALDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    + L  +     ++      G  G+F    L  L+  +W
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVW 342


>gi|254713835|ref|ZP_05175646.1| hypothetical protein BcetM6_10870 [Brucella ceti M644/93/1]
 gi|254717107|ref|ZP_05178918.1| hypothetical protein BcetM_11925 [Brucella ceti M13/05/1]
 gi|261218920|ref|ZP_05933201.1| permease [Brucella ceti M13/05/1]
 gi|261321581|ref|ZP_05960778.1| permease [Brucella ceti M644/93/1]
 gi|260924009|gb|EEX90577.1| permease [Brucella ceti M13/05/1]
 gi|261294271|gb|EEX97767.1| permease [Brucella ceti M644/93/1]
          Length = 382

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 13  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 72  LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 132 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 187 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 247 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 307 VGLHPVWLMFALFAFGSLFGFTGML 331


>gi|17987522|ref|NP_540156.1| permease [Brucella melitensis bv. 1 str. 16M]
 gi|23501600|ref|NP_697727.1| permease [Brucella suis 1330]
 gi|161618683|ref|YP_001592570.1| hypothetical protein BCAN_A0726 [Brucella canis ATCC 23365]
 gi|163842985|ref|YP_001627389.1| hypothetical protein BSUIS_A0744 [Brucella suis ATCC 23445]
 gi|225852233|ref|YP_002732466.1| hypothetical protein BMEA_A0750 [Brucella melitensis ATCC 23457]
 gi|254693464|ref|ZP_05155292.1| hypothetical protein Babob3T_02119 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254701494|ref|ZP_05163322.1| hypothetical protein Bsuib55_11631 [Brucella suis bv. 5 str. 513]
 gi|254704041|ref|ZP_05165869.1| hypothetical protein Bsuib36_08949 [Brucella suis bv. 3 str. 686]
 gi|254707057|ref|ZP_05168885.1| hypothetical protein BpinM_08751 [Brucella pinnipedialis
           M163/99/10]
 gi|254709833|ref|ZP_05171644.1| hypothetical protein BpinB_06086 [Brucella pinnipedialis B2/94]
 gi|256031323|ref|ZP_05444937.1| hypothetical protein BpinM2_11838 [Brucella pinnipedialis
           M292/94/1]
 gi|256044404|ref|ZP_05447308.1| hypothetical protein Bmelb1R_07888 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060836|ref|ZP_05450996.1| hypothetical protein Bneo5_10797 [Brucella neotomae 5K33]
 gi|256113247|ref|ZP_05454115.1| hypothetical protein Bmelb3E_11062 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159443|ref|ZP_05457215.1| hypothetical protein BcetM4_10813 [Brucella ceti M490/95/1]
 gi|260168461|ref|ZP_05755272.1| hypothetical protein BruF5_08853 [Brucella sp. F5/99]
 gi|261213720|ref|ZP_05928001.1| permease [Brucella abortus bv. 3 str. Tulya]
 gi|261314525|ref|ZP_05953722.1| permease [Brucella pinnipedialis M163/99/10]
 gi|261317372|ref|ZP_05956569.1| permease [Brucella pinnipedialis B2/94]
 gi|261324829|ref|ZP_05964026.1| permease [Brucella neotomae 5K33]
 gi|261752039|ref|ZP_05995748.1| permease [Brucella suis bv. 5 str. 513]
 gi|261754698|ref|ZP_05998407.1| permease [Brucella suis bv. 3 str. 686]
 gi|265988409|ref|ZP_06100966.1| permease [Brucella pinnipedialis M292/94/1]
 gi|265990824|ref|ZP_06103381.1| permease [Brucella melitensis bv. 1 str. Rev.1]
 gi|265994658|ref|ZP_06107215.1| permease [Brucella melitensis bv. 3 str. Ether]
 gi|265997875|ref|ZP_06110432.1| permease [Brucella ceti M490/95/1]
 gi|17983223|gb|AAL52420.1| permease [Brucella melitensis bv. 1 str. 16M]
 gi|23347515|gb|AAN29642.1| permease, putative [Brucella suis 1330]
 gi|161335494|gb|ABX61799.1| protein of unknown function [Brucella canis ATCC 23365]
 gi|163673708|gb|ABY37819.1| Hypothetical protein BSUIS_A0744 [Brucella suis ATCC 23445]
 gi|225640598|gb|ACO00512.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260915327|gb|EEX82188.1| permease [Brucella abortus bv. 3 str. Tulya]
 gi|261296595|gb|EEY00092.1| permease [Brucella pinnipedialis B2/94]
 gi|261300809|gb|EEY04306.1| permease [Brucella neotomae 5K33]
 gi|261303551|gb|EEY07048.1| permease [Brucella pinnipedialis M163/99/10]
 gi|261741792|gb|EEY29718.1| permease [Brucella suis bv. 5 str. 513]
 gi|261744451|gb|EEY32377.1| permease [Brucella suis bv. 3 str. 686]
 gi|262552343|gb|EEZ08333.1| permease [Brucella ceti M490/95/1]
 gi|262765771|gb|EEZ11560.1| permease [Brucella melitensis bv. 3 str. Ether]
 gi|263001608|gb|EEZ14183.1| permease [Brucella melitensis bv. 1 str. Rev.1]
 gi|264660606|gb|EEZ30867.1| permease [Brucella pinnipedialis M292/94/1]
          Length = 382

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 13  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 72  LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 132 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 187 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 247 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 307 VGLHPVWLMFALFAFGSLFGFTGML 331


>gi|288934305|ref|YP_003438364.1| hypothetical protein Kvar_1426 [Klebsiella variicola At-22]
 gi|288889034|gb|ADC57352.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
          Length = 369

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 136/337 (40%), Gaps = 3/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A I+     P+ +   ++  E +   A++  
Sbjct: 7   TKGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALLTI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  +   PL  +      E+  + SK+   +     V   L     G     L   +L
Sbjct: 67  VIICLIVFTPLAIILSSLAYELNVVYSKLQHNDTQFPTVVASLFAHLPGWARGFLAEHNL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q ++         +G  ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 127 DSAQQIQQQLSDVALKSG-QYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                  L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 186 TLESLP-LSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWVAGLDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +IYL   G ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|308174162|ref|YP_003920867.1| hypothetical protein BAMF_2271 [Bacillus amyloliquefaciens DSM 7]
 gi|307607026|emb|CBI43397.1| RBAM_021860 [Bacillus amyloliquefaciens DSM 7]
          Length = 356

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 115/342 (33%), Gaps = 17/342 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++ ++I+++  +  +  +           P++ + ++ +   PI      K +      
Sbjct: 13  VLLLFLIIYLGTLIDFLFQPVVITAKTLFPPIVLSGVLYYLCRPIVRVLHEKVKLPEGIA 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +        LF++ L         +       +   +       R L D          
Sbjct: 73  ILAIYAVTAGLFVLFLYTAGPAVQKQFAAFTDHIPELSAKAENWIRHLQDSKWFSRIQHE 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +                   N    I    S       +  ++   +  AL++  ++G 
Sbjct: 133 DSF----------KKAADKAANYSGSIADSLSSLAGAAANAAITAAIIPFALYYMLKEGN 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              ++L  L         K+I + + + + S   G  +++   G+++ + Y++ G+   +
Sbjct: 183 KAPRRLLRLLPEKHQKEGKQILQDMDEALSSYIQGQLLVSFCVGVLVTTGYFIIGLDYPL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG    +  +IP   P   T   + + +  +   A  + +   I   +  + + P ++G
Sbjct: 243 VLGAFAMVTNLIPFIGPWIGTFPGVIVGLFDSPTRAVLVVIVVVIVQQLESQLISPQIMG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + +  L   F L+   +  G+ G+ +     A+  VI   
Sbjct: 303 RKLDIHPLTIIFLLLAAGKFSGIAGMLLAIPGYAVAKVIISH 344


>gi|260757693|ref|ZP_05870041.1| LOW QUALITY PROTEIN: DUF20 domain-containing protein [Brucella
           abortus bv. 4 str. 292]
 gi|260668011|gb|EEX54951.1| LOW QUALITY PROTEIN: DUF20 domain-containing protein [Brucella
           abortus bv. 4 str. 292]
          Length = 382

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 13  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 72  LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 132 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 187 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 247 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 307 VGLHPVWLMFALFAFGSLFGFTGML 331


>gi|167583840|ref|ZP_02376228.1| hypothetical protein BuboB_00802 [Burkholderia ubonensis Bu]
          Length = 350

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 136/348 (39%), Gaps = 3/348 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + Q     ++  + +   + L  FF  V    I+     P+     ++  +     A++
Sbjct: 5   NDHQKFFYLLLFVVTVGLCWILTPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ + I+PL+F+    + E+  +  ++  A  +     + +           L   
Sbjct: 65  TLSLIILIVILPLVFVTATLVQEIAYVYQEIKTAQPNYTQYYQDIIHALPTSIQRLLAKY 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +++   ++             F+   A   G     + +S   M+  +FF  RDG  I 
Sbjct: 125 GVTNLTGIQKKLTDGAAQ-ISQFVAAQALVIGQNTFQFVISFGVMLYMVFFLLRDGGEIG 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++      L   +   +      V+R+T  G   +A+ +G + G  +W+ G+   V   
Sbjct: 184 RRVRRALP-LDDEHKHLLLSKFTTVVRATVKGNIAVALVQGALGGLIFWILGIEGVVLWS 242

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P     + +   +IY L+   I+    L  +    + +VD  LRP LVG  
Sbjct: 243 ALMAFLSLLPAIGAGLVWVPAAIYFLMIDEIWKCVILVAFCGGVIGLVDNLLRPILVGKD 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            K+P        +GG+   G+ G  IGP++ AL    W     A +  
Sbjct: 303 TKMPDWVVLLSTLGGMALFGINGFVIGPLIAALFMASWDIFARAEQGE 350


>gi|15642161|ref|NP_231793.1| permease PerM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586788|ref|ZP_01676570.1| permease PerM, putative [Vibrio cholerae 2740-80]
 gi|121727178|ref|ZP_01680345.1| permease PerM, putative [Vibrio cholerae V52]
 gi|147673150|ref|YP_001217681.1| putative permease PerM [Vibrio cholerae O395]
 gi|153801642|ref|ZP_01956228.1| permease PerM, putative [Vibrio cholerae MZO-3]
 gi|153818817|ref|ZP_01971484.1| permease PerM, putative [Vibrio cholerae NCTC 8457]
 gi|153822602|ref|ZP_01975269.1| permease PerM, putative [Vibrio cholerae B33]
 gi|153825615|ref|ZP_01978282.1| permease PerM, putative [Vibrio cholerae MZO-2]
 gi|153828640|ref|ZP_01981307.1| putative permease PerM [Vibrio cholerae 623-39]
 gi|227082287|ref|YP_002810838.1| putative permease PerM [Vibrio cholerae M66-2]
 gi|229507757|ref|ZP_04397262.1| hypothetical protein VCF_002986 [Vibrio cholerae BX 330286]
 gi|229512007|ref|ZP_04401486.1| hypothetical protein VCE_003417 [Vibrio cholerae B33]
 gi|229513809|ref|ZP_04403271.1| hypothetical protein VCB_001454 [Vibrio cholerae TMA 21]
 gi|229519143|ref|ZP_04408586.1| hypothetical protein VCC_003171 [Vibrio cholerae RC9]
 gi|229522114|ref|ZP_04411531.1| hypothetical protein VIF_002659 [Vibrio cholerae TM 11079-80]
 gi|229524160|ref|ZP_04413565.1| hypothetical protein VCA_001746 [Vibrio cholerae bv. albensis
           VL426]
 gi|229528829|ref|ZP_04418219.1| hypothetical protein VCG_001917 [Vibrio cholerae 12129(1)]
 gi|229607302|ref|YP_002877950.1| hypothetical protein VCD_002213 [Vibrio cholerae MJ-1236]
 gi|254226899|ref|ZP_04920467.1| permease PerM, putative [Vibrio cholerae V51]
 gi|254291395|ref|ZP_04962188.1| permease PerM, putative [Vibrio cholerae AM-19226]
 gi|254849244|ref|ZP_05238594.1| permease PerM [Vibrio cholerae MO10]
 gi|255745105|ref|ZP_05419054.1| permease PerM [Vibrio cholera CIRS 101]
 gi|262153505|ref|ZP_06028635.1| permease PerM [Vibrio cholerae INDRE 91/1]
 gi|262167515|ref|ZP_06035221.1| permease PerM [Vibrio cholerae RC27]
 gi|297582058|ref|ZP_06943977.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|298497820|ref|ZP_07007627.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9656715|gb|AAF95307.1| permease PerM, putative [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548955|gb|EAX58994.1| permease PerM, putative [Vibrio cholerae 2740-80]
 gi|121630423|gb|EAX62816.1| permease PerM, putative [Vibrio cholerae V52]
 gi|124122819|gb|EAY41562.1| permease PerM, putative [Vibrio cholerae MZO-3]
 gi|125620581|gb|EAZ48947.1| permease PerM, putative [Vibrio cholerae V51]
 gi|126510660|gb|EAZ73254.1| permease PerM, putative [Vibrio cholerae NCTC 8457]
 gi|126519850|gb|EAZ77073.1| permease PerM, putative [Vibrio cholerae B33]
 gi|146315033|gb|ABQ19572.1| putative permease PerM [Vibrio cholerae O395]
 gi|148875911|gb|EDL74046.1| putative permease PerM [Vibrio cholerae 623-39]
 gi|149740766|gb|EDM54865.1| permease PerM, putative [Vibrio cholerae MZO-2]
 gi|150422725|gb|EDN14679.1| permease PerM, putative [Vibrio cholerae AM-19226]
 gi|227010175|gb|ACP06387.1| putative permease PerM [Vibrio cholerae M66-2]
 gi|227014058|gb|ACP10268.1| putative permease PerM [Vibrio cholerae O395]
 gi|229332603|gb|EEN98089.1| hypothetical protein VCG_001917 [Vibrio cholerae 12129(1)]
 gi|229337741|gb|EEO02758.1| hypothetical protein VCA_001746 [Vibrio cholerae bv. albensis
           VL426]
 gi|229341039|gb|EEO06044.1| hypothetical protein VIF_002659 [Vibrio cholerae TM 11079-80]
 gi|229343832|gb|EEO08807.1| hypothetical protein VCC_003171 [Vibrio cholerae RC9]
 gi|229348990|gb|EEO13947.1| hypothetical protein VCB_001454 [Vibrio cholerae TMA 21]
 gi|229351972|gb|EEO16913.1| hypothetical protein VCE_003417 [Vibrio cholerae B33]
 gi|229355262|gb|EEO20183.1| hypothetical protein VCF_002986 [Vibrio cholerae BX 330286]
 gi|229369957|gb|ACQ60380.1| hypothetical protein VCD_002213 [Vibrio cholerae MJ-1236]
 gi|254844949|gb|EET23363.1| permease PerM [Vibrio cholerae MO10]
 gi|255736935|gb|EET92331.1| permease PerM [Vibrio cholera CIRS 101]
 gi|262024087|gb|EEY42782.1| permease PerM [Vibrio cholerae RC27]
 gi|262030742|gb|EEY49376.1| permease PerM [Vibrio cholerae INDRE 91/1]
 gi|297533753|gb|EFH72595.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297542153|gb|EFH78203.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 354

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 112/352 (31%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELAHLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    + + ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVIGNAKNKVLGMGESVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMLRMASGILP-RNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G  G+F    L  L+  +WK      +E
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEE 351


>gi|313634086|gb|EFS00758.1| permease [Listeria seeligeri FSL N1-067]
          Length = 378

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 127/360 (35%), Gaps = 14/360 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    ++FI+L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEVLAVVAVVFILLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 +I  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRILSVIIIFIAFIALIVLAIMQLGPTLADQVTELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    L        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SSLQGVDLKAELEKLNISLPKIMSVVVDGVASSFGAIVSFVSGFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +              K+I + + K I +      I  I  G+     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAAIRTEAKQIIKEMNKTISTYISSQAIDCIVVGMFTFVGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G+I     +IP   P    A ++ + +  +   A  + +   I   +    L 
Sbjct: 246 QPYALLFGLIAGATNIIPYLGPFIGAAPAVIVALFTSPLQALLVIIVVTIVQQLDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P+++G  + +  L     L+      G+ G+ +G  + A++  +       IK  + +++
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPVYAVVKTVIVNVNRLIKLRRNELA 365


>gi|119477091|ref|ZP_01617327.1| hypothetical protein GP2143_02174 [marine gamma proteobacterium
           HTCC2143]
 gi|119449454|gb|EAW30692.1| hypothetical protein GP2143_02174 [marine gamma proteobacterium
           HTCC2143]
          Length = 352

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 115/350 (32%), Gaps = 7/350 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + Q +   ++  +I+     L+    P L A ++ +   P      ++     T    
Sbjct: 1   MNDKQRLWLLLVAVLIIALFLLLEPILTPFLVAGLLAYLGDPFADRLEAR-GMGRTVAVT 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +   +++ L I  ++        ++  L   +    +               +    L  
Sbjct: 60  LVFSALILLLITAVVLTIPLIGRQLDLLAHAIPQWLEQLQLTLIPWLQKTLELPQGSLPI 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  S   ++   +       I   +        +  L    + +  F+  RD  ++
Sbjct: 120 AEFKTAISNNWVTAGSMLGQLWGKIAGSSLAMIAGLANLVL----IPVVTFYLLRDWDTL 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L          K++    ++I +   G  ++ +  G++        G+   + L
Sbjct: 176 MSHIRDLLPRSIEPTVVKLTNECDEIIGAFIRGQLLVMLALGILYSVGLGFVGLDLALIL 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNI--FNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+I  + +++P        A +                + L  A+   +    L P LVG
Sbjct: 236 GLIAGLASIVPYMGFFVGIAAASVAAWFQFHELMPLIGVALVFAVGQLLEGMVLTPLLVG 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             I L  +   F ++ G +  G  G+ +     A+I V+ + +  + K++
Sbjct: 296 DRIGLHPVAVIFAIMAGGQLAGFSGILLALPAAAIIMVLLRHAHRSYKDS 345


>gi|148546943|ref|YP_001267045.1| hypothetical protein Pput_1705 [Pseudomonas putida F1]
 gi|148511001|gb|ABQ77861.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 349

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 77/351 (21%), Positives = 159/351 (45%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N + +++ +++ ++   L+ +  F + +L   I+ F SWP+            T  A +
Sbjct: 3   NNDRLLVQILLVALLGAGLWVMAPFISALLWGAILAFASWPLMRFLTRLLGGRETLAAGL 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWT 124
            T++ + +  +PL++L +     +++  + V           P WL  IP          
Sbjct: 63  LTMAWILIVALPLVWLGFNLADHIRDATAFVRDVQVDGLPDAPAWLGGIPFVGERLVNGW 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L    +  + S         +++   +++ G   L+  LS++F+     FFYRDG  +
Sbjct: 123 QSLDQQGAALLTSIKPYFGQVGNWLLARSAQIGSGVLELTLSLVFVF----FFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +  L   L     +    +V   ++    G+   A  + L+    + +AGVP  + L
Sbjct: 179 AAFVLRLLHRLVGERAEYYLDLVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T ++++IP G P+++   + +L+ KG    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GLVTFMLSLIPMGPPLAWIPATAWLVWKGEYGMAVFLGVWGTFVISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             LP +    G+ GG+   G +GLFIGP L+A+   +  +      +  ++
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVGYSLLLDWSRNAAQPPQQ 349


>gi|312960058|ref|ZP_07774571.1| hypothetical protein PFWH6_1962 [Pseudomonas fluorescens WH6]
 gi|311285715|gb|EFQ64283.1| hypothetical protein PFWH6_1962 [Pseudomonas fluorescens WH6]
          Length = 355

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 136/331 (41%), Gaps = 3/331 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      +   +    ++   +  + + I+P++  
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPLQRRLQQRFGWNRNLTSLTTLMVCLVIAILPVIIT 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V                     +   L    L + + L+       
Sbjct: 81  SALLVQEGATLYKNVESGKLDVAGYIEQFKHFLPPYFQHLLDRFGLGNLEGLREKIVKSA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  F    A  FG    D+ +S   M+  LFF  RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQFFATQAFSFGQGTFDFLVSFFIMLYLLFFLLRDGPELVRKVRTAVP-LAEPQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +P+ +   V+ A ++++P     I
Sbjct: 199 RLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPNALLWAVLMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+ Y L+ G+I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAAYFLLSGSIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGL 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              GL G  IGP++ AL    W   + +   
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSWALFVESKPR 349


>gi|324326884|gb|ADY22144.1| hypothetical protein YBT020_14570 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 361

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEEK-KVPRNLAILLLYLFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 84  VGVGVVVPTISQQLMDLVKNMPGYIKEGKLYIQDLSHHRLFEWLSTQNY----VSIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 140 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 357


>gi|262373577|ref|ZP_06066855.1| permease [Acinetobacter junii SH205]
 gi|262311330|gb|EEY92416.1| permease [Acinetobacter junii SH205]
          Length = 372

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 155/331 (46%), Gaps = 7/331 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIATVSVMCLFIVPLLFLFY 83
            LK F  PVL A II + +WP+Y     +       T  A I    V+ +  +P +F  +
Sbjct: 34  ILKYFIVPVLWAAIIAYMTWPVYLWVQRRFFGENRPTLNATIMITLVILVIGIPFIFAIF 93

Query: 84  YGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              LE + L   +        I VP ++ ++P            LS   +    +     
Sbjct: 94  MLQLEGRNLYFNLQKQLFSGHIQVPDFIRNLPIIGKDISRTVNELSADPNSITKNVAEWI 153

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                    +            + + F I+ LFFFYRDG  I  Q+    E +       
Sbjct: 154 QGH----LSYGRFVLSEISRNLVKLTFAIMTLFFFYRDGQLILSQVSRALEMVIGPRVHH 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               + +  R+   G+ + A+ + ++ G +Y++A VP+ + L ++T I+A+IP G PIS+
Sbjct: 210 YLETISETTRAVVYGVGLTAVAQAILAGLSYFVADVPNPMLLTMVTFILALIPFGTPISY 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            +V ++L  +G    A  + +WG + +   D  +RP ++ G  K+PF+   FG++GG+ +
Sbjct: 270 LSVGLWLFAQGQTVEAIGVVVWGLLVVSSSDNVIRPLVISGATKIPFILIMFGVLGGIAS 329

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            GL+GLFIGPV++A++  IW+E +    +  
Sbjct: 330 FGLVGLFIGPVILAILLAIWREWLHENVQEP 360


>gi|254718848|ref|ZP_05180659.1| hypothetical protein Bru83_04800 [Brucella sp. 83/13]
 gi|265983833|ref|ZP_06096568.1| permease [Brucella sp. 83/13]
 gi|264662425|gb|EEZ32686.1| permease [Brucella sp. 83/13]
          Length = 382

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 13  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 72  LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 132 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 187 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 247 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 307 VGLHPVWLMFALFAFGSLFGFTGML 331


>gi|297202106|ref|ZP_06919503.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197713541|gb|EDY57575.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 459

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 17/320 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +           + AL+I     P  +  +            +  
Sbjct: 93  WRLLVLAGTVWVLMRVISSVQLVVFAFVVALLITALLQPTVARLMRH-GVPRGPATALTA 151

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +   F+ +  M  + +L  ++                     W  +      
Sbjct: 152 ILGFVIIGLMGWFVTWQVMENIDDLSDQIQSGIDDLRN------------WLLKSPFHVT 199

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         D I         + ++    I+    +  F   DG  I   
Sbjct: 200 DKQINQIAKNLREAVGANTDQITSAGLEGVQVVVEALTGILLTFFSTLFLLYDGRRIWNW 259

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                   + +   G  ++A+ + + +G   +   VP  V L V 
Sbjct: 260 TLKLVPAAARPAVAGAGPRAWHTLTAYVRGTVLVALIDAVFIGIGIYFLDVPMAVPLAVF 319

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             + + IP    ++  A+++  L+   +F A            I    L+PF++G  +++
Sbjct: 320 IFLFSFIPLVGAVASGALAVLALVTQGVFTAVMTLAVVLAVQQIEGHILQPFILGRAVRV 379

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  G    G+ G
Sbjct: 380 HPLAVVLTVATGGMVAGIGG 399


>gi|254391817|ref|ZP_05007012.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
 gi|326443835|ref|ZP_08218569.1| hypothetical protein SclaA2_22348 [Streptomyces clavuligerus ATCC
           27064]
 gi|197705499|gb|EDY51311.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 397

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 94/320 (29%), Gaps = 14/320 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A  I     P  +   ++          +    ++   +  ++ L      ++  +V   
Sbjct: 47  AFFIALAIEPAVARMAAR-GVRRGLATFLVFFGLLSAAVGFVVMLGSMLADQIVTMVEDF 105

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
                  I                + +   LS  +    +  +    + ++         
Sbjct: 106 PQYLDSVISWIN------------QTFETELSRVEVQDSVLRSDWLQSYVEDSATGVLDV 153

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               L     ++ + +  F+F  DG  + + + S+      A   +   I          
Sbjct: 154 SATVLGGLFRLLTIFLFSFYFAADGPRLRRTICSVLPPAKQAEVLRAWEIAVDKTGGYIY 213

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNI 275
              ++A+  G        + GVP   AL V   +++  IP        A+ + +    N 
Sbjct: 214 SRGLMALISGGAHYVLLEVLGVPYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVNP 273

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  +  +  +     +  L+P L    + +     F  ++ G   MG +G  I    +
Sbjct: 274 WYAVWVLGFVVVYQQFENYVLQPKLTARTVDIHPAVAFGSVIAGTALMGAVGALIAIPAV 333

Query: 336 ALIAVIWKESIMAIKENKEK 355
           A +       +       + 
Sbjct: 334 ATLQAFLGAYVRRYDVTDDP 353


>gi|182678281|ref|YP_001832427.1| hypothetical protein Bind_1297 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634164|gb|ACB94938.1| protein of unknown function UPF0118 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 382

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 119/350 (34%), Gaps = 9/350 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
                  ++++  +       P  +A+++G+   P+      +   +     ++   + +
Sbjct: 9   FWIAAFLLLILFFWLFSAVILPFAAAVVLGYLLDPVADHLE-RLGLNRLGATLLILAAFV 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-----WTKH 126
            L +  L+ +      ++   +  +         +    SD     +   L      ++ 
Sbjct: 68  LLLVAVLILIVPVLGHQLAGFIQSLPEYIIKLQDLISKESDRLTDQYIGVLVGKLGLSRL 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +                  +     G   +     ++   +  F+   D   +  
Sbjct: 128 SGPELAPPTSDMVSQVVQWGAGFIKSLWTGGAALVSLISLLVVTPVVAFYMLLDWDKMIA 187

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++DSL      A  ++++  +   +     G +++ +  GL  G  + L G+   + +G+
Sbjct: 188 KIDSLIPIRHRATVRELASEIDGAMAGFLRGQSLVCLFLGLWYGIGFTLVGLNFGLLIGI 247

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL---WGAIELFIVDKTLRPFLVGG 303
              I++ IP    ++   V   + +  +  +   L +     A+  F+    L P LVG 
Sbjct: 248 SAGILSFIPYVGSLTALVVGSTVAVVQDWPSWHLLAVTLGVIAVGQFLEGNILSPKLVGE 307

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +   F L+      G  GL     L A + V+ + ++   +++ 
Sbjct: 308 SVGLHPVWVMFSLLAFGSLFGFTGLLTAVPLAAAMGVVLRFAVKRYRDSP 357


>gi|295702680|ref|YP_003595755.1| hypothetical protein BMD_0519 [Bacillus megaterium DSM 319]
 gi|294800339|gb|ADF37405.1| Conserved Hypothetical Protein [Bacillus megaterium DSM 319]
          Length = 380

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 118/335 (35%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI++    F+K    P++ A I  +   P+      K         ++  + ++    
Sbjct: 40  IGFILIPISIFIKTIALPIILAGICFYLFNPLVDFLERK-GVKRIISILVLYIVIIGALA 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      ++  L+  +             LS+        +     L        
Sbjct: 99  IIISSVIPPLKNQVDRLIDNIPELTHDVQHAVTNLSNNRYVEQGLQSANTDLDKISKDAS 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +     I  F         +  LS+  +   LF+  +DG ++   +  L  + 
Sbjct: 159 KHLSKYVSGFSSGIVNFVGTIT----EIILSVAVLPFILFYLLKDGKNLPNYIVKLLPNR 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +  K I   +   + +   G   +AI  G++L   Y + G+   + L +I  +  ++P
Sbjct: 215 SRSEAKFILADMNHALSAYIRGQIFVAICIGVLLFIGYLIIGLDYALLLAIIAMVTNVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI     +I +    + F    L +  A+   +  K + P ++G  + +  +   F 
Sbjct: 275 YLGPIIAIIPAIIIAFITSPFMLVKLAIVWAVVQLLEGKVISPQIMGRSLDIHPITVIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++      G++G+ +     A++ VI       I+
Sbjct: 335 ILTAGNLFGIIGIILAVPGYAVLKVIITHIYQFIR 369


>gi|311032815|ref|ZP_07710905.1| hypothetical protein Bm3-1_20134 [Bacillus sp. m3-13]
          Length = 355

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 115/333 (34%), Gaps = 10/333 (3%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI+   + F+   F P+L A  + +   P+ +     K    T   ++   +++   ++ 
Sbjct: 29  FIVNPIISFITTLFFPILFAGFLFYILKPLVNFLAKSKYVPRTLAIILVFSAIIGGAVLG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +      ++ +         +      + L D       S                 
Sbjct: 89  GFSVGGKIEEQVVQFAEDFPAFLEKNEEQTKELMDDNNFGLISY----------EEAKKR 138

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                      I    S       ++   ++ +   LF+F +DG  +   +  +  +   
Sbjct: 139 GLAFLKEQSQRIGENVSSIISSITNFVTILVVVPFILFYFLKDGHKLLPFILKMLPNKHH 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              K++   + K + +   G  I+A+  G ++   Y + G+   + L +   I A++P  
Sbjct: 199 DEGKRLLTDIDKTLSTYIGGQMIVALVNGFLMYIGYLIIGLDYALVLALFIVITAVVPII 258

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + +  + F    + +  AI   I    + P ++G  + +  L     L+
Sbjct: 259 GPALGVLPAVIIGLMTDPFMVVKILILLAIVQQIEGNLVSPQIIGNKLSIHPLTVILLLL 318

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G +G+ +   + +++ V+ K      +
Sbjct: 319 AAGKLYGFIGILLAVPVYSVLKVVTKNLYEVYR 351


>gi|308048984|ref|YP_003912550.1| hypothetical protein Fbal_1267 [Ferrimonas balearica DSM 9799]
 gi|307631174|gb|ADN75476.1| protein of unknown function UPF0118 [Ferrimonas balearica DSM 9799]
          Length = 355

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 103/349 (29%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           RE   +PQ +   +I+ +    +YF      P+L A++  +           ++    T 
Sbjct: 10  REKFSDPQAVTLAVILLVGFAVIYFYGSLIMPLLVAVVFAYMLESPVGWMT-RQGIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V    L +V    L      +   L +++         +   L +    +    
Sbjct: 69  SASLVLVLFAGLMLVATFGLLPALWRQGVALATELPSMVSQWQNLIMTLPEQYPTLIDEH 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +++  +  + +   L +  +  +               +  I + + +FFF +D 
Sbjct: 129 QLASLMANFNNSLLSTGQNLVSQSLSSLVDLV--------ALMVYAILVPLLMFFFLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                K++   +   I +   G  I  +  G      ++   +   
Sbjct: 181 DELMSSFGRFIP-DNRDLAKQVWGEMNVQIGNYIRGKVIEILIIGTASYLTFFFMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LG +  +  +IP       T     +     G       L L   I   I    L P 
Sbjct: 240 ALLGALVGLSVLIPYIGATVVTVPVALVGFFQWGISPEFGYLMLAYGIIQAIDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  L+  +       
Sbjct: 300 LFSEAVNLHPVAIIVAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPSH 348


>gi|283455471|ref|YP_003360035.1| hypothetical protein BDP_0542 [Bifidobacterium dentium Bd1]
 gi|283102105|gb|ADB09211.1| Conserved hypothetical membrane spanning protein [Bifidobacterium
           dentium Bd1]
          Length = 499

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/348 (9%), Positives = 102/348 (29%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  ++    +     +      ++ +L +     P+    +        F ++
Sbjct: 56  RALLYIAIAIVVFSFCWRSWGQIAYLVMDIVVSLFLALAVEPVVVPLVKH-GWKRAFASL 114

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A V +  +            + ++  +++ +    +         ++            
Sbjct: 115 FALVLLAVILCTLFGLFGNMFVQQVIAMINGLPDLYKQICDFVSQYTN------------ 162

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    SL       ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 163 FELPEINSLGSEILKNIQTSWVTDFAGTALSTVSGLFSFLLNLMTIVMTTYYISAAGPKL 222

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S      I+A+           +  VP  + L
Sbjct: 223 RRAACQWMAPAAQRRFLFVWTVSQGQISSFLFSRAILALLNATFTAICLEVLHVPYWLPL 282

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   + +  IP     I      ++      I+    +  +  +   I +    P +  
Sbjct: 283 ALFCGVTSQFIPMLGTYIGGALPVLFAWGNRGIWYGIAVLAFICVYQQIENLIFAPKISQ 342

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G LG F+   + A I  I++       
Sbjct: 343 RTMNINDAVAFLAVLAFGSLFGALGAFLALPVTASIQTIFRTYTKRYD 390


>gi|187923378|ref|YP_001895020.1| hypothetical protein Bphyt_1381 [Burkholderia phytofirmans PsJN]
 gi|187714572|gb|ACD15796.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 371

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 74/357 (20%), Positives = 151/357 (42%), Gaps = 5/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
             A +  + ++ + + P ++  +     + E+V+ V    +     +P W++ IP     
Sbjct: 61  GAATLIVLIILIVVLGPFVYAGFAFGAHVHEIVALVQRLFEAGLPDLPPWVARIPLVGSN 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + L+   S  I     L      +I   A             +   I+  FFFY 
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAAIAVT----HGLGLLALSIVLAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP
Sbjct: 177 GGEGAAAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLAVGMSDNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +     +  +
Sbjct: 297 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPAARALV 353


>gi|255319430|ref|ZP_05360645.1| permease [Acinetobacter radioresistens SK82]
 gi|262379393|ref|ZP_06072549.1| sporulation integral membrane protein YtvI [Acinetobacter
           radioresistens SH164]
 gi|255303498|gb|EET82700.1| permease [Acinetobacter radioresistens SK82]
 gi|262298850|gb|EEY86763.1| sporulation integral membrane protein YtvI [Acinetobacter
           radioresistens SH164]
          Length = 395

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 122/347 (35%), Gaps = 6/347 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + ++L  LY LK    P L A +I +   P+ +               I  +
Sbjct: 7   RRIFILAAIALLLWVLYLLKPVVIPFLMAFLIAYLFSPLVAWLHKY-HLPRWLSISIVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L ++ + ++      ++      +            +L  +       ++      
Sbjct: 66  GIGILLVLAIWYVVPLVWQQLVYARDSIPAGIHWLNAT--FLPWVSNTFNVEQMEIDTEQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    +T    + I  +    ++ G+ F+    +I+ + I  F+F  D   +   +
Sbjct: 124 ISTVVMDYIQTNYSADSIQTMLLRLAQSGLNFIQIGGTIVLIPIIAFYFLLDWDRMLNSM 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +     ++      V+ +   G  ++ I  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEKNTIQVVHECHNVLGAFVKGQFLVMILLGIVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +      + +   +   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVIATLFQFGLDWTQLILVGVVFMVGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +   F ++ G +  G  G+ I   + A+I V+ +      + +
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFFGMLIALPMAAVIVVLLRHLRECYEHS 350


>gi|25011316|ref|NP_735711.1| hypothetical protein gbs1267 [Streptococcus agalactiae NEM316]
 gi|76798341|ref|ZP_00780585.1| transport protein [Streptococcus agalactiae 18RS21]
 gi|77412788|ref|ZP_00788993.1| putative membrane protein [Streptococcus agalactiae 515]
 gi|23095740|emb|CAD46926.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586292|gb|EAO62806.1| transport protein [Streptococcus agalactiae 18RS21]
 gi|77161084|gb|EAO72190.1| putative membrane protein [Streptococcus agalactiae 515]
          Length = 396

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 120/361 (33%), Gaps = 18/361 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++  MI F++ ++++              FL     P++ + ++ +   P+ + 
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         +     ++ L I  +         +++  +  +              
Sbjct: 78  LEKR-GIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D    + +   +   +S   S                +  +A           ++ I  
Sbjct: 137 IDHNPWLKS---YKGEISSMLSNISSQAVSYAEKFSKNVLEWAGNLASTVARVTVATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGIIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373

Query: 351 E 351
            
Sbjct: 374 A 374


>gi|283833290|ref|ZP_06353031.1| putative membrane protein [Citrobacter youngae ATCC 29220]
 gi|291070927|gb|EFE09036.1| putative membrane protein [Citrobacter youngae ATCC 29220]
          Length = 369

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 142/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G   +++  +       L  +F+ +L A I+     P+ +   S   E +   ++I  
Sbjct: 7   TKGFFIFILAVVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNGLASLITI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +  +PL+ +     +E+  + +K+   +     V   +     G WA     +H 
Sbjct: 67  AIICLIVFIPLMVILSSLAIELNVVYTKLQQNDTQFPEVVTSILSYLPG-WARGFLAEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +Q
Sbjct: 126 LDNAAEIQKKLSNIALQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G++ G A+ +  +   V  G +
Sbjct: 186 ILDSLP-LSDFAKQHLFAKFVGVTRATVKGTAVVALVQGILGGIAFAIVDIDGSVLWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +   +I+L     ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK-EKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        E   E I   F
Sbjct: 305 MPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWNLFSGRDHEGNVEGIDEAF 359


>gi|260575895|ref|ZP_05843890.1| protein of unknown function UPF0118 [Rhodobacter sp. SW2]
 gi|259021821|gb|EEW25122.1| protein of unknown function UPF0118 [Rhodobacter sp. SW2]
          Length = 364

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 117/341 (34%), Gaps = 14/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   +  V L+ L     P +    + +   PI      +   S        ++++M + 
Sbjct: 14  VAALVFFVLLWVLGSVILPFVLGGAVAYFLDPIADRLQ-RLGLSRVAATATISIAMMLIV 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +L +      ++  L++      +                          +      
Sbjct: 73  VLLVLAVIPTLFNQLTALINSAPDIVRKMQAFL----------TERFPELNDRTSTIRQT 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + S           +        +  ++  + I+ + +  F+   D   +  ++D++   
Sbjct: 123 LQSIGDTIKAQGGQLANTLIGSALGVVNAVVFIVVVPVVAFYLLLDWDRMVARIDAVLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++R + +V+ +   G   + +  G     A   AG+   + +GVI   +  I
Sbjct: 183 DHAPVVRQLARDIDRVLAAFVRGQLSVCLALGTFYSVALMAAGLQFGLVVGVIAGAITFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +    ++I L      G+  +   +    A+  F+    + P +VG  I L  + 
Sbjct: 243 PYVGALIGGMLAIGLALFQFWGDWVSIGIVGGIFALGQFLEGNVITPRIVGNSIGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             F L       G +G+ +   + A + V+ + ++   +E+
Sbjct: 303 LLFALSAFGSLFGFVGMLVAVPVAASLGVLARFAVAQYQES 343


>gi|228940031|ref|ZP_04102605.1| hypothetical protein bthur0008_26820 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972926|ref|ZP_04133521.1| hypothetical protein bthur0003_26900 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979509|ref|ZP_04139839.1| hypothetical protein bthur0002_26870 [Bacillus thuringiensis Bt407]
 gi|228780206|gb|EEM28443.1| hypothetical protein bthur0002_26870 [Bacillus thuringiensis Bt407]
 gi|228786799|gb|EEM34783.1| hypothetical protein bthur0003_26900 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819643|gb|EEM65694.1| hypothetical protein bthur0008_26820 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 348

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPSYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|262276464|ref|ZP_06054273.1| permease PerM [Grimontia hollisae CIP 101886]
 gi|262220272|gb|EEY71588.1| permease PerM [Grimontia hollisae CIP 101886]
          Length = 360

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 117/360 (32%), Gaps = 12/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    ++ I  V +YF     AP+L A+++ +      +  + +   + T 
Sbjct: 10  KRRFSDPHAVSLIALLVIGFVVIYFFGNLLAPLLVAIVLAYLLEWPVAKMV-RLGLNRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  +   I+ L  L      ++  L++ +             L +    +    
Sbjct: 69  SVILVLLLFVGFMILALFGLMPTIWNQIINLIADIPTMFSGFQDYVSHLPEAYPELIQPH 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +   QS  +     +  + +  +   A+          + +I + + +FF  +D 
Sbjct: 129 MVNTFIDTVQSRVLGMGETVVKSSLASLVSLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +   SL          K+   + + I +   G     I  G+     + +  +   
Sbjct: 181 EEMMRSFTSLLP-RNRRLTNKVGVEMNEQISNYIRGKVTEIIIVGITSYITFAILDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V T +  +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 VLLSVATGLSVLIPYIGAAAVTLPIFVVALFQWGISPELGYLMLAYGIIQALDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     ++      G  G+F    L  L+  +W        + +    +N
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSHDPDGEVTAETN 359


>gi|146308016|ref|YP_001188481.1| hypothetical protein Pmen_2994 [Pseudomonas mendocina ymp]
 gi|145576217|gb|ABP85749.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 360

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 115/319 (36%), Gaps = 8/319 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              +P L  +++ +   P+       +  S T   V+       + ++ LL L      +
Sbjct: 25  PILSPFLIGILLAYLGDPLVDRLERHR-LSRTGGVVLVFTLFALVLLIMLLVLVPMLGRQ 83

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  L                  S    G+    L    L    S  I       T+ +  
Sbjct: 84  LVRLYQLAPEMLDWLQGTALPWSQSHLGLQNDLLQVDQLKQVFSDNIGK----TTDVLRA 139

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A+  G+  L +  +++ + +  F+  RD   + +++  L      A   K++    
Sbjct: 140 VLAQATSSGLALLAWLGNLLLIPVVSFYLMRDWDVLVERVRRLLPRQREALAVKLAGECH 199

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +V+ +   G  ++ +   ++  +   L G+   + +GV+  +  ++P    I     ++ 
Sbjct: 200 EVLGAFLRGQLLVMLALSIIYSAGLMLVGLELGLLIGVLAGLANIVPYMGFIVGIGAALT 259

Query: 269 LLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             +     + +    + +   +   +    L P LVG  I L  +   F ++ G +  G 
Sbjct: 260 AALFQFGLDPYPLLGIGVVFMVGQMLEGMLLTPLLVGDRIGLHPVAVIFAILAGGQLFGF 319

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   + A+I V+ + 
Sbjct: 320 TGVLLALPVAAVIMVLLRH 338


>gi|306823458|ref|ZP_07456833.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|309802730|ref|ZP_07696834.1| putative membrane protein [Bifidobacterium dentium JCVIHMP022]
 gi|304553165|gb|EFM41077.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
 gi|308220794|gb|EFO77102.1| putative membrane protein [Bifidobacterium dentium JCVIHMP022]
          Length = 500

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/348 (9%), Positives = 102/348 (29%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  ++    +     +      ++ +L +     P+    +        F ++
Sbjct: 60  RALLYIAIAIVVFSFCWRSWGQIAYLVMDIVVSLFLALAVEPVVVPLVKH-GWKRAFASL 118

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A V +  +            + ++  +++ +    +         ++            
Sbjct: 119 FALVLLAVILCTLFGLFGNMFVQQVIAMINGLPDLYKQICDFVSQYTN------------ 166

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    SL       ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 167 FELPEINSLGSEILKNIQTSWVTDFAGTALSTVSGLFSFLLNLMTIVMTTYYISAAGPKL 226

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S      I+A+           +  VP  + L
Sbjct: 227 RRAACQWMAPAAQRRFLFVWTVSQGQISSFLFSRAILALLNATFTAICLEVLHVPYWLPL 286

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   + +  IP     I      ++      I+    +  +  +   I +    P +  
Sbjct: 287 ALFCGVTSQFIPMLGTYIGGALPVLFAWGNRGIWYGIAVLAFICVYQQIENLIFAPKISQ 346

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G LG F+   + A I  I++       
Sbjct: 347 RTMNINDAVAFLAVLAFGSLFGALGAFLALPVTASIQTIFRTYTKRYD 394


>gi|256369147|ref|YP_003106655.1| permease, putative [Brucella microti CCM 4915]
 gi|255999307|gb|ACU47706.1| permease, putative [Brucella microti CCM 4915]
          Length = 382

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 98/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 13  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 72  LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F    D   +   
Sbjct: 132 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFCMLLDWDRMVNS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 187 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLNFGLLIGFF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I +       +      +     +  FI    L+P LVG  
Sbjct: 247 AGLISFIPYIGSFVGLALAIGVALVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 307 VGLHPVWLMFALFAFGSLFGFTGML 331


>gi|323488328|ref|ZP_08093576.1| permease [Planococcus donghaensis MPA1U2]
 gi|323397986|gb|EGA90784.1| permease [Planococcus donghaensis MPA1U2]
          Length = 413

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 106/320 (33%), Gaps = 6/320 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A I+ +   P+ +   +K   S      +  V V  L    +  L      ++  L
Sbjct: 63  PLIMAGILYYLLNPLINWMENK-NISRIASISMVFVVVAGLLAWGIATLIPIIREQLMSL 121

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +          I                      L         S T    N +      
Sbjct: 122 IDNWQDYLNTFISQIDH----FFKNDLLSQLQTQLMGGTEPLSTSITDQTENVVGSTVTG 177

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                 +     L++I     LF+  +DG      +  L       +   + R +   I 
Sbjct: 178 LGSVFGVLSTTLLALITTPFILFYLLKDGHHFPYHIMKLLPSKMREHSYLLLREMNLQIS 237

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLI 271
               G  ++A   GL+    + L G+   + L ++  ++ +IP     I+F  + I  ++
Sbjct: 238 QYIRGQLLVAFFVGLMFWIGFSLVGLKYALTLSIMAGVLNLIPFLGSFIAFIPIVIIAIV 297

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             +      + +   IE  +  +  +P ++G  +++  +     L+      G++G+ +G
Sbjct: 298 VHSPIMLVKVLVVFFIEQTLEGRVFQPLILGSNLQIHPITIIAVLLTAGNLFGVVGVILG 357

Query: 332 PVLMALIAVIWKESIMAIKE 351
               A+I VI+       + 
Sbjct: 358 IPAYAVIKVIFSHLFSWYQR 377


>gi|270292832|ref|ZP_06199043.1| membrane protein [Streptococcus sp. M143]
 gi|270278811|gb|EFA24657.1| membrane protein [Streptococcus sp. M143]
          Length = 387

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 113/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + L++  +   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLKDADMVINDLVTKRLPDDFRPQLEQVLANVSTEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 IWASKISSQAVNWVSAFISSVSQVIVAVI----IVPFMLFYLLRDGKGLRDYLTKFIPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPAGEVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|254509168|ref|ZP_05121267.1| permease PerM [Vibrio parahaemolyticus 16]
 gi|219547919|gb|EED24945.1| permease PerM [Vibrio parahaemolyticus 16]
          Length = 356

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 114/352 (32%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      S    +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSQLS-RLGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    L +V +  L      ++  L++ +             L      +   +
Sbjct: 69  AVILVILGFSSLMLVAVFGLVPTIWQQVGNLINDIPTMYVGLQSFIAELPHRYPELENFQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESLVTNAKNQAIGMGETVVKGSLASLVSLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMIEMASGVLP-RNRRLANKVWHEMNEQISNYIRGKVMEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T     + L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G  G+F    L  L+  +W       +E
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHDEE 351


>gi|167032838|ref|YP_001668069.1| hypothetical protein PputGB1_1830 [Pseudomonas putida GB-1]
 gi|166859326|gb|ABY97733.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 354

 Score =  136 bits (342), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 141/339 (41%), Gaps = 3/339 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  ++  + +   + L  ++  +  A+I+G    P+    + +        A   T
Sbjct: 7   QNKALAVLLALVTIAFFWILLPYYGAIFWAVILGILFAPLQRHLLIRFGRRRNLAAAATT 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+P++      + E   L  ++               D+        L    +
Sbjct: 67  LVCLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVEHGKDMLPAFAQHGLDNMGM 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L+     +  T G   +   A  FG    ++ +S   M+  LFFF R+G  ++++
Sbjct: 127 GNLDGLRDKITKW-ATQGSQALASQAFSFGQGTFEFVISFGIMMYLLFFFLREGPEVARR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS +   V+
Sbjct: 186 VRLAVP-LPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGLIFWVLDIPSALVWAVL 244

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +  V+ Y L+ G I     L  +G + + +VD  LRP LVG   +
Sbjct: 245 MAFLSLLPAVGAGIVWAPVAAYFLLTGAILPGVILTAFGVLVIGLVDNLLRPILVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P        +GG+   GL G  IGP++ AL    W   
Sbjct: 305 MPDYLILVSTLGGLAVFGLNGFVIGPLIAALFMSSWGIF 343


>gi|240080750|ref|ZP_04725293.1| hypothetical protein NgonF_05467 [Neisseria gonorrhoeae FA19]
 gi|240123489|ref|ZP_04736445.1| hypothetical protein NgonP_06040 [Neisseria gonorrhoeae PID332]
 gi|268596868|ref|ZP_06131035.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268682120|ref|ZP_06148982.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
 gi|268550656|gb|EEZ45675.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268622404|gb|EEZ54804.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
          Length = 356

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 118/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  +Y L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        + G   +    +++   + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+     MG +G+  G  L A+  V+ +E     
Sbjct: 311 IFSLMAFGELMGFVGMLAGLPLAAVTLVLLREGAQKY 347


>gi|225854947|ref|YP_002736459.1| transport protein [Streptococcus pneumoniae JJA]
 gi|225722535|gb|ACO18388.1| transport protein [Streptococcus pneumoniae JJA]
          Length = 388

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KVNRVIAITIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    +   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VLASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRNYLTQFIPRK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVIFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|217965322|ref|YP_002351000.1| membrane protein YubA [Listeria monocytogenes HCC23]
 gi|217334592|gb|ACK40386.1| membrane protein YubA [Listeria monocytogenes HCC23]
 gi|307570122|emb|CAR83301.1| conserved hypothetical protein [Listeria monocytogenes L99]
          Length = 390

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +    ++S          T +  + I  I         + L    + 
Sbjct: 128 DEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTSVINSAISSIGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|206973928|ref|ZP_03234846.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217960351|ref|YP_002338911.1| hypothetical protein BCAH187_A2961 [Bacillus cereus AH187]
 gi|206748084|gb|EDZ59473.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217064849|gb|ACJ79099.1| putative membrane protein [Bacillus cereus AH187]
          Length = 361

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 84  VGVGVVVPTISQQLMDLVKNMPGYIKEGKLYIQDLSHHRLFEWLSTQNY----VSIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 140 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 357


>gi|283783584|ref|YP_003374338.1| hypothetical protein HMPREF0424_1139 [Gardnerella vaginalis 409-05]
 gi|298252961|ref|ZP_06976755.1| permease of the PurR regulon [Gardnerella vaginalis 5-1]
 gi|283441589|gb|ADB14055.1| putative membrane protein [Gardnerella vaginalis 409-05]
 gi|297533325|gb|EFH72209.1| permease of the PurR regulon [Gardnerella vaginalis 5-1]
          Length = 526

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 105/348 (30%), Gaps = 19/348 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      + ++   I+  + + L+F           V+ ++ I     P+    I     
Sbjct: 38  RPPDWLGRALIYVAIITFVSIFLWFAWNSISFIVFDVVISIFIALAMEPLVVRLIKH-GW 96

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                +      ++ +  + L         ++  +V  +                     
Sbjct: 97  RRGVASGFTLTGLLVVISLLLALFGNLFAQQVVSMVMGLPDLYNQFANF----------- 145

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    + + + L +     ++T+ +      A       +   L ++ +I+  ++ 
Sbjct: 146 -VLHYTGFKMPNIEQLGMEILKHVQTSWVVDFAGQALNTTWGLMTVLLDLLTIIMVTYYI 204

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G ++ + +           +  I  +V + I S      I+A    +       +  
Sbjct: 205 SAAGPAMRRSMCRWMNPQSQRRFLFIWSVVQEQISSFLFSRIILAAINAVGTAIFLIVMN 264

Query: 238 VPSHVALGVITAIMA-MIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +P  + L +   I++  +P  G  +      +          A    ++  I   I +  
Sbjct: 265 IPYWLPLSLFCGIVSQFVPTIGGYLGGALPILVAWGSNGFGAAVATLIFITIYQQIENMV 324

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + P +    + L     F  ++      G LG F+   + A +  I++
Sbjct: 325 ISPKISEKTMDLNPAVAFISVLVMGAVFGALGAFLALPVTASLQAIFR 372


>gi|116490227|ref|YP_809771.1| permease [Oenococcus oeni PSU-1]
 gi|116090952|gb|ABJ56106.1| Predicted permease [Oenococcus oeni PSU-1]
          Length = 394

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 98/326 (30%), Gaps = 6/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI      F++  F P++ A  + +   P+                 I     + + I
Sbjct: 29  LSFIFEPIGIFIRTIFLPLIVAGFLYYLLHPVVVFLEKHFHFKHLLAVAITFFVFIVILI 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
              +      + ++  ++  +         +              +          S   
Sbjct: 89  SVFVIFVPQLIAQISNMLGSLPKFVDDMRNMTDSWVKSKWFKQLYQ------DVKISNIQ 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  ++               + ++II + I LF+   DG      ++      
Sbjct: 143 KQISKYSSTFLEMSLSSLGNIASFLTTFTINIITIPIMLFYMLADGDKFIPFINRFIFPS 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  ++  +   I     G  I  I     +   Y +   P    LG+   +  +IP
Sbjct: 203 RSKEVNDLAARMNNTISRYIDGQFIEGIFVMFFITGGYLIIRQPFAPLLGIFAGLCVLIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      SI + +  +      + +   I   +    + P ++G  +K+  L     
Sbjct: 263 YLGPFISIIPSILIALTVSGQQVLAVLVVVLIVSQLDGNLIYPNVIGRNLKIHPLTIIII 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+      GL+G+ +G  + A++  +
Sbjct: 323 LLSAGNIWGLIGIILGVPIYAVLRTL 348


>gi|323488048|ref|ZP_08093301.1| hypothetical protein GPDM_01865 [Planococcus donghaensis MPA1U2]
 gi|323398316|gb|EGA91109.1| hypothetical protein GPDM_01865 [Planococcus donghaensis MPA1U2]
          Length = 395

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 124/344 (36%), Gaps = 1/344 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI      F+K    P++ AL+  +   PI      K +    +  +I  + ++ L  
Sbjct: 43  VSFIFHPVTVFMKTVVLPIVLALVFFYLLRPILRLLE-KFKIPRIWGIIIIFLGLVGLIT 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + +F +   + + L++         +                      L    +   
Sbjct: 102 LLSVLVFPFLRSQFQNLIADFPEYFMQLVTAVDGFLRTSLVGDYYSESNFTLDTLLATLP 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      N +  I    +          LSI+ +   LF+  +DG  + +    L    
Sbjct: 162 DNIADTLQNTVTGIISGITGLISTITGVILSIVIVPFILFYLLKDGEKLPEYFLKLLPPR 221

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F    +++     K + +   G  I+A   G+++   + + G+   + LGV+  + +++P
Sbjct: 222 FRDDTREVFSEANKQLGAYIQGQLIVAFCIGVMVYIGFLIIGMEYALLLGVLAMVTSVVP 281

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A +  + +  + F    L +   +   +    + P ++G  + +  +   F 
Sbjct: 282 YIGPAIAIAPAAIIALVTSPFMLVKLAIVWTVVQLVEGNLISPQVMGKTMFIHPVTIIFV 341

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+      G++G+ +G  + AL+ V+        K    +  +N
Sbjct: 342 LLTAGSLFGVVGVILGIPMYALLRVLVSHFYKLFKRRYNRHETN 385


>gi|298291255|ref|YP_003693194.1| hypothetical protein Snov_1260 [Starkeya novella DSM 506]
 gi|296927766|gb|ADH88575.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 370

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 143/342 (41%), Gaps = 3/342 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +++ +    L+ L  ++  +L A+I+     P+     ++        A ++ ++ +
Sbjct: 31  FVVLVIGVTAAFLWLLLPYYGAILWAVILAILFDPLRRRLEARLGGCRNLAAALSVLACI 90

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           C+ ++P   +      E   L +++         +   +             T +L    
Sbjct: 91  CIVVIPGAAILASLAQEAASLYNRINTREFDLATLLGEIQGALPPFVEKAFATLNLGDFV 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++    +FL       +   A   G     + +S+  M+  LFF +RDG  ++  +   
Sbjct: 151 EIRTRLTSFLM-YASQEVATRALSIGQNTAQFFVSLGVMLYLLFFLFRDGRLLANLIRKA 209

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L   +   I      V+ +T  G  IIA  +G + G A+W+ G+ + +  GV+ A +
Sbjct: 210 SP-LSGRHTDHILEKFSSVVAATVKGNIIIAAIQGGIGGIAFWMLGIQAALLWGVLMAFL 268

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P  GA + +  V++Y L+  + F    LF  G + +  VD  LRP LVG   +LP  
Sbjct: 269 SLLPAIGAALVWVPVAVYFLLAADYFRGVVLFAVGVLVISTVDNLLRPPLVGRGTRLPDY 328

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                 VGG+  +G+ G  IGP++ AL   +W         +
Sbjct: 329 VVLISTVGGLSVIGMNGFVIGPLIAALFIAVWSLFSEEQLHS 370


>gi|322392082|ref|ZP_08065544.1| membrane protein [Streptococcus peroris ATCC 700780]
 gi|321144982|gb|EFX40381.1| membrane protein [Streptococcus peroris ATCC 700780]
          Length = 387

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 111/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + FL     PV+ + ++ +   P+        + +      I  V +  L I
Sbjct: 42  ISFLFIPVIDFLSVVMLPVILSGLLFYLLNPLVDFMEKH-KINRVLAISIIFVIIAILLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V L         ++      V    +    V   L              + L+   +   
Sbjct: 101 VGLAVAIPNLQRQVVIFAQNVPSYLEDADKVIDDLVTKRLPDDFRPQLEQVLAQFSTQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + + +  ++++    S    + +        M   LF+  RDG  +   +     + 
Sbjct: 161 AWASNISSKAVNWVSALISGTSQVIVALI----IMPFMLFYLLRDGKGLRNYITQFLPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+   V + + +   G   +A+   ++    + + G+   V LG+    + ++P
Sbjct: 217 LREPVGKVLSEVNQQLANYVRGQITVAVIVAIMFIIFFKIIGLRYGVVLGITAGFLNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMIPALVLGLIAGPIMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+         E
Sbjct: 337 LLTSGSMFGIWGVLLGIPIYASAKVVISAIFDWYTE 372


>gi|300781580|ref|ZP_07091434.1| possible permease [Corynebacterium genitalium ATCC 33030]
 gi|300533287|gb|EFK54348.1| possible permease [Corynebacterium genitalium ATCC 33030]
          Length = 540

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 92/304 (30%), Gaps = 14/304 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +    I  +I    Y +  F     P++ ALI+     P+ S    K        A+++
Sbjct: 78  SLRMVAIFILIGALAYLVGKFWAGILPIVLALIVCTVLEPVTSFL-RKHGLPGALSALMS 136

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + + +  +  +    +   + L  +     Q      +    +P  + A ++    
Sbjct: 137 MLLALAVLVFFVSMILPDIITNSRVLAIQAGQGLQSLALWLQNQDSLPFSVDAEQI---- 192

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +  +        N    I               ++ + +++  FFF  DG     
Sbjct: 193 -----NEVVQDSITWVQNRAGAIAGGIFSGISTATSMMITFVVVVVLTFFFLNDGPKFLP 247

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + S        +  ++   +   +        +++  + + +G   W  GVP    L V
Sbjct: 248 WVRSATGGRAGLHATELLTRIWNTLCGYIRAQAVVSFIDAVCIGVGLWAVGVPMAFTLAV 307

Query: 247 ITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT +   IP    I       I  L+      A  +         +    L P L    +
Sbjct: 308 ITFMAGFIPLVGAIVAGALAVIIALVSLGFTEALIVLGIVIAVQQLEGNVLSPLLQSRAM 367

Query: 306 KLPF 309
            L  
Sbjct: 368 NLHP 371


>gi|47528209|ref|YP_019558.1| hypothetical protein GBAA_2916 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|228915507|ref|ZP_04079096.1| hypothetical protein bthur0012_27260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927960|ref|ZP_04091005.1| hypothetical protein bthur0010_26630 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228934173|ref|ZP_04097012.1| hypothetical protein bthur0009_26320 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229185124|ref|ZP_04312312.1| hypothetical protein bcere0004_26800 [Bacillus cereus BGSC 6E1]
 gi|47503357|gb|AAT32033.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|228598381|gb|EEK56013.1| hypothetical protein bcere0004_26800 [Bacillus cereus BGSC 6E1]
 gi|228825341|gb|EEM71135.1| hypothetical protein bthur0009_26320 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228831650|gb|EEM77242.1| hypothetical protein bthur0010_26630 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228844154|gb|EEM89214.1| hypothetical protein bthur0012_27260 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 348

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y++  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|314936488|ref|ZP_07843835.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655107|gb|EFS18852.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
          Length = 409

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 118/355 (33%), Gaps = 18/355 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWP------------IYSSFISKKEE 57
            ++  +++ I +     +   F P +   I    + P               + + +   
Sbjct: 35  ALVSLVLLGITIFIFDKISYVFQPFVI--IFNTIAAPIILSLILYYLLNPVINLMERYNI 92

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  I  + ++    + +  L      ++K+L +      +        ++ +    
Sbjct: 93  PRLLAITIVFLVIIGGATLIIDLLIPVIGDQIKQLANNFPKYIEKFNRAIDKVTHM---- 148

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +   +             L ++           F    ++  + I      LFF 
Sbjct: 149 SILSSFYNQIQDWLDSTSKKIPSLTSDYFSGFGTKIRTFAEAVVNVGVVIATTPFVLFFM 208

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG         +    F   +  +   +   + S   G  I++   G++L   Y + G
Sbjct: 209 LKDGTKFRDYTTKIVPPKFRKDYHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIG 268

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + L  I A+ +++P   P    + +I + I  + F    L +   +  FI    + 
Sbjct: 269 LDYGLVLASIAAVTSVVPYLGPTIAISPAIIIAIITSPFMLLKLIIVWTLVQFIEGHFIS 328

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K  
Sbjct: 329 PNIMGKTLKIHPLTIIFILLSAGNLLGIVGVILGIPGYAILKVLVSHIFLLFKRR 383


>gi|59801203|ref|YP_207915.1| hypothetical protein NGO0789 [Neisseria gonorrhoeae FA 1090]
 gi|240014126|ref|ZP_04721039.1| hypothetical protein NgonD_05668 [Neisseria gonorrhoeae DGI18]
 gi|240016561|ref|ZP_04723101.1| hypothetical protein NgonFA_05224 [Neisseria gonorrhoeae FA6140]
 gi|240115637|ref|ZP_04729699.1| hypothetical protein NgonPID1_05225 [Neisseria gonorrhoeae PID18]
 gi|240117930|ref|ZP_04731992.1| hypothetical protein NgonPID_05637 [Neisseria gonorrhoeae PID1]
 gi|240121688|ref|ZP_04734650.1| hypothetical protein NgonPI_07968 [Neisseria gonorrhoeae PID24-1]
 gi|240128188|ref|ZP_04740849.1| hypothetical protein NgonS_06047 [Neisseria gonorrhoeae SK-93-1035]
 gi|260440550|ref|ZP_05794366.1| hypothetical protein NgonDG_05586 [Neisseria gonorrhoeae DGI2]
 gi|268601319|ref|ZP_06135486.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268603645|ref|ZP_06137812.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268686588|ref|ZP_06153450.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
 gi|59718098|gb|AAW89503.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|268585450|gb|EEZ50126.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
 gi|268587776|gb|EEZ52452.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
 gi|268626872|gb|EEZ59272.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 356

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 117/337 (34%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  +Y L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             + T   +N +        + G   +    +++   + L++F  D    S  +  L   
Sbjct: 131 FQAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+     MG +G+  G  L A+  V+ +E     
Sbjct: 311 IFSLMAFGELMGFVGMLAGLPLAAVTLVLLREGAQKY 347


>gi|311105126|ref|YP_003977979.1| hypothetical protein AXYL_01931 [Achromobacter xylosoxidans A8]
 gi|310759815|gb|ADP15264.1| hypothetical protein AXYL_01931 [Achromobacter xylosoxidans A8]
          Length = 363

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 134/346 (38%), Gaps = 3/346 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++          +++ + +   + L  F+  V    ++     P+    +++      
Sbjct: 1   MSQSSSVHYRTFLLLLVVVTIAFGWLLWPFYGAVFWGAVLAIIFAPLQRRLVARIGGRRN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+I  + V+ L I+PL+ +    + E   L   V     +     +  +         
Sbjct: 61  LAALITLLLVLLLVILPLIVISGSLVREGANLYQSVKSGQINFGAYFQQ-AMAALPPSVH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L  +             +        F+   A   G     + +S   M+  LFF  RD
Sbjct: 120 DLLARFDLTDIPSLQEKLSAGAMQASQFLATQALNIGQDTFQFVISFGIMLYLLFFLLRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S +L      L   + + + R    V+R+T  G   +A  +G + G  + +  +  
Sbjct: 180 GPLLSARLKRAMP-LSDTHKQHLLRKFTTVVRATVKGNVAVAAAQGALGGIIFSILSIQG 238

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI   ++++P     + +  V+IY L+ G       L L+G + + +VD  LRP 
Sbjct: 239 ALLWGVIMGFLSLLPAIGAGLIWAPVAIYFLLTGATIKGVVLILFGVLVIGMVDNVLRPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   K+P        +GG+   GL G  IGP++ AL    W   
Sbjct: 299 LVGKDTKMPDYVVLISTLGGMALFGLNGFVIGPLIAALFMASWDLF 344


>gi|290889609|ref|ZP_06552699.1| hypothetical protein AWRIB429_0089 [Oenococcus oeni AWRIB429]
 gi|290480807|gb|EFD89441.1| hypothetical protein AWRIB429_0089 [Oenococcus oeni AWRIB429]
          Length = 394

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 98/326 (30%), Gaps = 6/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI      F++  F P++ A  + +   P+                 I     + + I
Sbjct: 29  LSFIFEPIGIFIRTIFLPLIVAGFLYYLLHPVVVFLEKHFHFKHLLAVAITFFVFIVILI 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
              +      + ++  ++  +         +              +          S   
Sbjct: 89  SVFVIFVPQLIAQISNMLGSLPKFVDDMRNMTDSWVKSKWFKQLYQ------DVKISNIQ 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  ++               + ++II + I LF+   DG      ++      
Sbjct: 143 KQISKYSSTFLEMSLSSLGNIASFLTTFTINIITIPIMLFYMLADGDKFIPFINRFIFPS 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  ++  +   I     G  I  I     +   Y +   P    LG+   +  +IP
Sbjct: 203 RSKEVNDLAARMNNTISRYIDGQFIEGIFVMFFITGGYLIIRQPFAPLLGIFAGLCVLIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S+ + +  +      + +   I   +    + P ++G  +K+  L     
Sbjct: 263 YLGPFISIIPSLLIALTVSGQQVLAVLVVVLIVSQLDGNLIYPNVIGRNLKIHPLTIIII 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+      GL+G+ +G  + A++  +
Sbjct: 323 LLSAGNIWGLIGIILGVPIYAVLRTL 348


>gi|257865853|ref|ZP_05645506.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257872187|ref|ZP_05651840.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257799787|gb|EEV28839.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257806351|gb|EEV35173.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 371

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 114/336 (33%), Gaps = 6/336 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   PI    +   +    F  ++  + ++   I+ 
Sbjct: 32  FLFAPIGTFFSTLFAPVLIAGFLYYLLNPIVLFLMKTTKIKRLFAVILVLLLLVAAIILI 91

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + +    + ++  L   +    ++       ++D P            ++       LS
Sbjct: 92  FVSVIPNLVSQITSLAENIPTFAKNMESWISRIADDPFFKQID------IAQQLENLNLS 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L    +  +               + I+ +   LF+  +DG  +   L ++      
Sbjct: 146 YGSLLQQFLSGLSTSLGSIVSTIASATMIIVTVPFILFYMLKDGEKLVPNLKTVFPERRR 205

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + K + +   G  I  I         YW+ GV      GVI  +  +IP  
Sbjct: 206 EQIVGLLGDLNKTLSNYISGQAIECIFVATFTFIGYWMIGVNYAFLFGVIAGVTNLIPYL 265

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + +    F A    +   +   +    + P ++G  + +  L     L+
Sbjct: 266 GPYLGLIPAVLVTVFDEPFRALLCCVVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLL 325

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 GLLG+F+G    A+   I    +  IK++K
Sbjct: 326 VAGNLAGLLGIFLGVPFYAICRTIVVFIVRLIKDDK 361


>gi|319745230|gb|EFV97549.1| membrane protein [Streptococcus agalactiae ATCC 13813]
          Length = 396

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 121/361 (33%), Gaps = 18/361 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++  MI F++ ++++              FL     P++ + ++ +   P+ + 
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         +     ++ L I  +         +++  +  +              
Sbjct: 78  LEKR-GIKRVTAILAVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D    + + +     +    S + +S           +  +A           ++ I  
Sbjct: 137 IDHNPWLKSYKGEISSILSNISSQAVSY---AEKFSKNVLDWAGNLASTVARVTVATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD   +      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRKMKNGFLMVLPTKLRQPTDRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373

Query: 351 E 351
            
Sbjct: 374 A 374


>gi|229589626|ref|YP_002871745.1| hypothetical protein PFLU2129 [Pseudomonas fluorescens SBW25]
 gi|229361492|emb|CAY48368.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 355

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 141/334 (42%), Gaps = 3/334 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + +  ++ L  F+  V  A+I+G    P+      +   +  F ++    + + + I+P+
Sbjct: 18  VTIAFIWILLPFYGAVFWAVILGIIFAPMQRRLQQRFGWNRNFTSLATLSACLIIAILPV 77

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           +      + E   L   V               ++    +   L    + + + L+    
Sbjct: 78  IITSALLVQEGATLYKNVESGKLDVAGYIEQFKNVLPPYFQHLLDRFGMGNLEGLREKIV 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                 G  F    A  FG    D+ +S   M+  LFF  RDG  + +++ +    L   
Sbjct: 138 KSAMQ-GSQFFATQAFSFGQGTFDFLVSFFIMLYLLFFLLRDGPELVRKVRTAVP-LAEP 195

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++     +V+R+T  G  ++A+ +G + G  +W   +PS +   V+ A ++++P   
Sbjct: 196 QKRRLQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAVLMAFLSLLPAVG 255

Query: 259 P-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             I +  V+ Y L+ G+I+    L L+G   + +VD  LRP LVG   K+P        +
Sbjct: 256 AGIVWGPVAAYFLLSGSIWQGVVLALFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTL 315

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           GG+   GL G  IGP++ AL    W   + +   
Sbjct: 316 GGLSVFGLNGFVIGPLVAALFMSSWALFVESKPR 349


>gi|58039452|ref|YP_191416.1| hypothetical protein GOX0988 [Gluconobacter oxydans 621H]
 gi|58001866|gb|AAW60760.1| Hypothetical transmembrane protein [Gluconobacter oxydans 621H]
          Length = 419

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 109/344 (31%), Gaps = 5/344 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +RE +      +  + +  +  SLYF      P + AL++             +      
Sbjct: 44  LREHLNIRDMCVLILTILAVFYSLYFTAPILLPFVFALVLNLLMIAPMRFLTQRLHLPRH 103

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  V +  +       +       +      +         +   +  +       
Sbjct: 104 LAGLMLIVMMFGIVGGIATTISVPAAGWITRAPQTLPALQSKLALLSGPIDVVQRDYMRL 163

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  S            +       + R  S       +       M++ LFF   +
Sbjct: 164 SAMFSGHSGSTHTTHGVSGTIGGE--TALSRLGSSVLAGTRELAGGFFSMLLMLFFLMTE 221

Query: 181 GFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G ++ ++   +           +++  + + +    + +T++ +G GLV     W  G+P
Sbjct: 222 GDTLLRRCVEIMPTYAKKRRLVEMATQIEQNVSLYLVTITMMNLGVGLVNMIQCWATGMP 281

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           + +  GV+  ++  IP   P++   V     L    ++  A        +   +  +T+ 
Sbjct: 282 NPLLWGVLAFLLNYIPIIGPLTGVVVYFVVGLFSFPSLLYALLPPSIYLLIHVLEGETIT 341

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P L+     L  +     L+      G+ G F+   ++A+  ++
Sbjct: 342 PMLLARRFTLNPVFVMGSLLFWDWMWGISGAFLSVPMLAVFKIV 385


>gi|163848208|ref|YP_001636252.1| hypothetical protein Caur_2657 [Chloroflexus aurantiacus J-10-fl]
 gi|222526116|ref|YP_002570587.1| hypothetical protein Chy400_2873 [Chloroflexus sp. Y-400-fl]
 gi|163669497|gb|ABY35863.1| protein of unknown function UPF0118 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222449995|gb|ACM54261.1| protein of unknown function UPF0118 [Chloroflexus sp. Y-400-fl]
          Length = 432

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 107/360 (29%), Gaps = 15/360 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++I   L        P +   ++ +   P+ + F            +   +
Sbjct: 14  RWLLIGFSIYLIGWLLSAAGSAVTPFIFGGVLAYLFLPLVNFFNRWL--PRWLAILTVYL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN------QHGIPVPRWLSDIPGGMWASEL 122
                 +  + F+    + ++ EL+  +             I     L         +E+
Sbjct: 72  LTFGAIVAAIAFVVPPLIAQITELIRALPDIATIQREANRLIDEYEQLLASLPPALQAEV 131

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI--FLDYCLSIIFMIIALFFFYRD 180
            +   S              +          +    +   + + L    +   LF+   D
Sbjct: 132 QSAIASATAEGLSTLRANFVSYLQGVGQFLVNSVLSVVNTVTFLLGFFLVPFWLFYVLMD 191

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-----YWL 235
             +    LD +      A +  +  I+   +     G  I+    GL             
Sbjct: 192 QRAGRAYLDRMIHPRLRADFWAMVTIIDHDLSGYLRGQLILGTSVGLAAWIGLTALNMAG 251

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P  V L V+  +  ++P   PI     +I L +  +   A  + +       + +  
Sbjct: 252 MNIPYTVLLAVVAGVTELVPVIGPIIGAIPAILLGLADSPTTALAVTILYIAIQQLENHI 311

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L P ++G  + +        LV   +  GLLG  +   L A+   ++      + +    
Sbjct: 312 LVPRIIGESVGVHPAILMVVLVVCSQVFGLLGAILSAPLSAMARDLFLYLYGRLSDPPRP 371


>gi|325274729|ref|ZP_08140770.1| hypothetical protein G1E_15893 [Pseudomonas sp. TJI-51]
 gi|324100130|gb|EGB97935.1| hypothetical protein G1E_15893 [Pseudomonas sp. TJI-51]
          Length = 354

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/345 (19%), Positives = 148/345 (42%), Gaps = 3/345 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  ++  + +  ++ L  ++  +  A+++     P+  + + +        A+  T
Sbjct: 7   QNKALAVLLALVTIAFVWILLPYYGAIFWAVVLAILFAPLQRNLVMRFGRRRNLAAITTT 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + ++P++      + E   L  ++               D+      + L    +
Sbjct: 67  MICLLVAVLPVIITSLLLVQEGATLYQRIESGQLDIAGYVERGKDMLPAFAQNGLDHLGV 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L+     +  T G   +   A  FG    ++ +    M+  LFFF R+G  ++++
Sbjct: 127 GNLDGLRDKITKW-ATQGSQVLASQAFSFGQGTFEFLIGFGIMMYLLFFFLREGADVARR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     +++     +V+R+T  G  ++A+ +G + G  +W+  +PS +  GV+
Sbjct: 186 VRLAVP-LPEHQKRRLQLKFNRVVRATVKGNVLVAVTQGALGGFIFWVLDIPSALVWGVL 244

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+++++P     I +  V++Y L+ G I     L  +G + + +VD  LRP LVG   +
Sbjct: 245 MALLSLLPAVGAGIVWAPVAVYFLLTGAILPGIILTAFGVLVIGLVDNLLRPILVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +P        +GG+   GL G  IGP++ AL    W     A  +
Sbjct: 305 MPDYLILVSTLGGLTVFGLNGFVIGPLIAALFMSSWAIFAEAKPQ 349


>gi|91778865|ref|YP_554073.1| membrane transporter [Burkholderia xenovorans LB400]
 gi|91691525|gb|ABE34723.1| Putative membrane transport protein [Burkholderia xenovorans LB400]
          Length = 650

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 100/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +   +++  LYF +    P+  ++++ F   P+      +          IA + 
Sbjct: 24  GLASVITGVVVVCGLYFGRAVLIPITLSVLLSFLLAPLVQML-RRLHMGQLPSIFIAVLF 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-------------LSDIPGG 116
            +   +     +    +    +L    V   Q    V                ++     
Sbjct: 83  ALASLLAIGALIGAQLVQLAGDLPQYQVAIEQKIETVQEKTVGRADSLMSRAAVALQRVA 142

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                         ++   + +            + A R     +    +   +++   F
Sbjct: 143 PSRPNPPRATGRAARNAPAVPQPVEVHEPSPTPLQLAQRALSPAIAPIETTFIVLVVTIF 202

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G V+     + 
Sbjct: 203 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSRYFVAQLGVNLSAGGVIAIGLAII 262

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++++L   I+     A    +   +   +  +
Sbjct: 263 GVPGALLFGVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVYTLILFIVVDLVAGQ 322

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 323 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCVVTLGR 371


>gi|320546512|ref|ZP_08040827.1| membrane protein [Streptococcus equinus ATCC 9812]
 gi|320448897|gb|EFW89625.1| membrane protein [Streptococcus equinus ATCC 9812]
          Length = 395

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 123/369 (33%), Gaps = 19/369 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSSF 51
           LN Q  +  ++ FI+ ++LY              FL     P++ + I+ +   P+ +  
Sbjct: 19  LNSQATVAILVTFIVFLTLYLFTKISFLFEPVLAFLAIIMLPLVISAILYYLIKPLVAFI 78

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
             +   S T    I    ++ L I  +         ++K  +  +    +        L 
Sbjct: 79  ERR-GFSRTTSIFIVFAIIIALIIWAVASFIPMIEGQVKSFIENLPAYVKSVNIEGSKLL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             P            L +  +  +        N  D+   FAS    + +   +S   + 
Sbjct: 138 RSPWLSNYQTELQDMLVNISNKAVDYAESFSKNAFDWASNFASAIARVTVAIIMSPFILF 197

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
               +F RD   +   L             +I   + K +     G   +AI  G++   
Sbjct: 198 ----YFLRDSHKMKDGLIKALPTKMRRPSARILGDINKQLAGYVQGQVTVAIVVGIMFTV 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            + + G+      G+I   + MIP           + + I         + +   IE  I
Sbjct: 254 FFNIIGLRYAATFGIIAGFLNMIPYLGSFLAMVPVVIMGIVQGPIMLVKVLVTFVIEQTI 313

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             + + P ++G  + +  +   F L+      G+ G+F+G  + A I V+ KE     K 
Sbjct: 314 EGRFVAPLVLGSKLSIHPITIMFILLTSGSMFGIWGVFLGIPIYASIKVVVKEIFDWYKG 373

Query: 352 NKEKISSNF 360
                  +F
Sbjct: 374 VSGLYEEDF 382


>gi|291043852|ref|ZP_06569568.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|293399067|ref|ZP_06643232.1| permease [Neisseria gonorrhoeae F62]
 gi|291012315|gb|EFE04304.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|291610481|gb|EFF39591.1| permease [Neisseria gonorrhoeae F62]
          Length = 359

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 117/337 (34%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  +Y L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 20  AAFAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 79  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 133

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             + T   +N +        + G   +    +++   + L++F  D    S  +  L   
Sbjct: 134 FQAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPR 193

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 194 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 253

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 254 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+     MG +G+  G  L A+  V+ +E     
Sbjct: 314 IFSLMAFGELMGFVGMLAGLPLAAVTLVLLREGAQKY 350


>gi|157961796|ref|YP_001501830.1| hypothetical protein Spea_1973 [Shewanella pealeana ATCC 700345]
 gi|157846796|gb|ABV87295.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 369

 Score =  136 bits (342), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 126/360 (35%), Gaps = 11/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +   +I+    +++YF  G  AP+L AL++ F      +   ++   + T 
Sbjct: 10  KDRFSDPQAVTLMLILMGFALAIYFAGGLLAPLLIALVLAFLLEWPVAQM-ARIGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + L ++    L      +   L++ +      G+   +   +         
Sbjct: 69  AASLVLVLFIGLMLLISFGLVPSVWRQGVSLMADLPSMIDKGLHTAQLYINKYPQFVNPS 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     ++    +  L T  +  I +    +    L   + +I + + +FFF +D 
Sbjct: 129 QL-------DTMVAELKKMLDTQHLLDIGKQLLGYSASLLVLMVYVILIPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +              +K+   + + I +   G  I  +  G+     + L  +   
Sbjct: 182 DELIKGSKRFFPT-NRDLARKVWNEMHQQIFNYIRGKIIEIVIIGVASYIFFALMDLRYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L +   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPIALVAFVQWGFSPEFGYLMVGYGIIQALDGNVLVPL 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     ++      G+ G+F    L +L+  +     +    +++KI ++
Sbjct: 301 LFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVINAWPVPNNPDEQKIEAS 360


>gi|77407806|ref|ZP_00784559.1| membrane protein, putative [Streptococcus agalactiae COH1]
 gi|77173553|gb|EAO76669.1| membrane protein, putative [Streptococcus agalactiae COH1]
          Length = 396

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 120/361 (33%), Gaps = 18/361 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++  MI F++ ++++              FL     P++ + ++ +   P+ + 
Sbjct: 18  ILNNQAVIALMITFLVFLTIFIFTKISFMFKPVFDFLAVLILPLVISGLLYYLLKPMVTF 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         +     ++ L I  +         +++  +  +              
Sbjct: 78  LEKR-GIKRVTAILSVFTIIILLLIWAMSSFIPMMSNQLRHFMEDLPSYVNKVQMETSSF 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            D    + +   +   +S   S                +  +A           ++ I  
Sbjct: 137 IDHNPWLKS---YKGEISSMLSNISSQAVSYAEKFSKNVLDWAGNLASTVARVTVATIMA 193

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD  ++      +          +I R +   +     G  I+AI  G++  
Sbjct: 194 PFILFYLLRDSRNMKNGFLMVLPTKLRQPADRILREMNSQMSGYVQGQIIVAITVGVIFS 253

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             Y + G+   V LG+I  ++ M+P             L +         + +   IE  
Sbjct: 254 IMYSIIGLRYGVTLGIIAGVLNMVPYLGSFVAQIPVFILALVAGPVMVVKVAIVFVIEQT 313

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+      G+ G+F+   + A I V+ KE     K
Sbjct: 314 LEGRFVSPLVLGNKLSIHPITIMFILLTSGAMFGVWGVFLSIPIYASIKVVVKELFDWYK 373

Query: 351 E 351
            
Sbjct: 374 A 374


>gi|328544000|ref|YP_004304109.1| Permease, putative [Polymorphum gilvum SL003B-26A1]
 gi|326413744|gb|ADZ70807.1| Permease, putative [Polymorphum gilvum SL003B-26A1]
          Length = 420

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 114/354 (32%), Gaps = 9/354 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L  Q     + +   +V +        P ++ + + +   P+      +   S  + 
Sbjct: 60  RMTLRRQIQFWMLSLLAFIVFMLVFSAVLLPFVAGMALAYLLDPVADRLE-RVGMSRLWA 118

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   +  + LF + LL L      ++   + ++    +    +            A   
Sbjct: 119 TLTILLVFVLLFALFLLLLVPVLGNQLLGFLDRLPGLVRALHTLVTETFGDRLSTLAGLD 178

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                S    +   + ++L       + +     G   +      +   +  F+   D  
Sbjct: 179 IKDLQSSLGDIMSKAASWL-----GGLMQSVWSGGQALVSILSLFVVTPVVAFYLLLDWD 233

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  ++D           ++++R +   +     G   + +  GL       L G+   +
Sbjct: 234 RMVARIDGWLPRPHVETIRRLAREMDAAVAGFVRGQVSVCVLLGLFYAIGLMLVGLNFGL 293

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +G+   +++ IP    I    VS+ +       +      +    A+  F+    L+P 
Sbjct: 294 LIGIGAGLVSFIPFVGAILGFVVSMAVALVQFWPDWPLIAAVAAVFAVGQFLEGNILQPK 353

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG  + L  +   F L       G +G+ +     A++ V+ + ++     + 
Sbjct: 354 LVGDSVGLHPVWLMFALFAFGSLFGFVGMLVAVPAAAMVGVLARFALTQYLASP 407


>gi|225376543|ref|ZP_03753764.1| hypothetical protein ROSEINA2194_02185 [Roseburia inulinivorans DSM
           16841]
 gi|225211580|gb|EEG93934.1| hypothetical protein ROSEINA2194_02185 [Roseburia inulinivorans DSM
           16841]
          Length = 457

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 113/354 (31%), Gaps = 17/354 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE---------------ESSTFLAVIAT 67
               L     PV+  L++ +   P+      K                  S       A 
Sbjct: 69  FWKKLTYILQPVIIGLVVAYLLNPLMKLIDGKLFSLFKGKMKSEKKAKKISRGLAIAGAL 128

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS--DIPGGMWASELWTK 125
           + ++ + ++ +  +    +  ++ ++S +    +  +     ++  D      A E+ T+
Sbjct: 129 LFLVGIIVLLIAAIVPSIIQSIQGIISTLPAEVRSLVDWINDIAKGDSQIADIAEEVITQ 188

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +  ++    +        I  I           ++  + +I  +  +    +      
Sbjct: 189 AGNFFENWMKNTLLPQAEVYISSITSGVITGVKFVINILVGLIISVYVMASQEKFAGQAK 248

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + ++ + +      +  R   ++      G  + +   G++      +  +P  + + 
Sbjct: 249 KIIYAIFKPVRANVVVETVRKSNEIFGGFISGKILDSAIIGVIAYIVLAIMKMPDTMLVA 308

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  +IP   P      S  +++  N        ++  I   +    + P ++G   
Sbjct: 309 VIIGVTNIIPFFGPFIGAIPSFIIIVLQNPVQGLYFLIFVIILQQVDGNIIGPKILGDST 368

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L      F ++      G  G+ +G  +MA+I  I    +    + +    + 
Sbjct: 369 GLSSFWVVFAILVFGGLWGFPGMLLGVPIMAVIYYIVSNVVTYSLKKRGIPETE 422


>gi|148555776|ref|YP_001263358.1| hypothetical protein Swit_2868 [Sphingomonas wittichii RW1]
 gi|148500966|gb|ABQ69220.1| protein of unknown function UPF0118 [Sphingomonas wittichii RW1]
          Length = 358

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 138/350 (39%), Gaps = 3/350 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                  G    +++ + +     +  FF  +L  L++     P++   + +    S   
Sbjct: 8   RRFRFEDGSFLALVLIVTVAFAMVIAPFFGAILWGLVLALMFSPVHRRILDRMPGRSNVA 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A+I  + ++ + I+P  FL    + E   + + V         +   ++      WAS  
Sbjct: 68  ALITLLIIILIVILPAAFLGSAMIQEFLHVYAMVQSGQIDIARMFEQMTGALP-DWASHW 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    +      +   +     I   A + G   L+  L +  M+   FF  RDG 
Sbjct: 127 LAARGLTDFAAARQQISETLSGSFSAIAAHALQVGQGALNLVLMLGVMLYLTFFLIRDGE 186

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++++      L P   + + R    V R+T  G  I+AI +G   G  + L G+   +
Sbjct: 187 ELARRVIESIP-LDPDRRRAVIRNFTVVTRATIKGSLIVAIVQGFTGGVTFALLGIEGAL 245

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G + AI ++IP     I +  V++YL   G +     L + GA+ +  +D  LRP LV
Sbjct: 246 LWGTMMAIFSLIPAIGCGIVWVPVALYLFATGAVVKGIILVVAGALVIGSIDNVLRPLLV 305

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G   ++P        +GG++  G  G  +GPV+ AL    W       + 
Sbjct: 306 GRDTRMPDYVVLISTLGGLQLFGFHGFIVGPVVAALFIGTWNIVTEQRRA 355


>gi|298368747|ref|ZP_06980065.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282750|gb|EFI24237.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 356

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 125/337 (37%), Gaps = 8/337 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   ++  +L  LY L     P + A ++ +   P+      K+       +++  V 
Sbjct: 12  WIIMGCVIAALLWLLYALGDILTPFVIAAVLAYVLNPLVEWLQLKR-FKRGAASMMVMVF 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +   L +    + +   LV+++                +P     +  + +  + 
Sbjct: 71  ALSVLLALTLIIVPMLINQFNNLVARLPQITAFVQNTL-----LPWLSRYAGRYIELDTQ 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                + S T   +  +  I     +     +    ++  +   L++F  D    SQ + 
Sbjct: 126 SIVGWLQSHTGELSGTLQKIMPEVMKQSGNVISGVSNLFLLPFLLYYFLLDWRRWSQGIS 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    F   + +I+  + +V+     G  ++ +  G+V G    L G+ S  A+G+I  
Sbjct: 186 KLVPRRFIDTYSRITGNMDEVLGEFLRGQLMVMLIMGVVYGVGLMLTGLDSGFAIGMIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+  IP     +   ++        G       +++   I  F+    + P +VG  I L
Sbjct: 246 ILVFIPYLGAFTGLLLATVAALLQFGTWHGLIMVWVVFGIGQFLESFIVTPKIVGDRIGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 F L+   + MG +G+  G  L A+  V+ +E
Sbjct: 306 SPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLRE 342


>gi|225870739|ref|YP_002746686.1| membrane protein [Streptococcus equi subsp. equi 4047]
 gi|225700143|emb|CAW94274.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
          Length = 393

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ + + P+      K   + T    I    V+ LF 
Sbjct: 43  ISFLFTPILSFLAIIMLPLVISTILYYLTKPLVDMVE-KLGPNRTASIFIVFGLVILLFF 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         +++  V  +             L +    +         L+      +
Sbjct: 102 WAISGFIPMIQDQLRSFVEDLPKYVAKVNLEANKLLENEWLVSYRSNLQDMLTSMSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +   +S   +     +F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAIIMSPFILF----YFLRDSGHMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  GL+    + L G+   +  G+I   + MIP
Sbjct: 218 LRQPMARVLGEINKQLSGYVQGQVTVAIVVGLMFSVMFSLVGLNYSITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMGMVQGPLMLIKVLIIFVIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPVYASVKVVVKELFDWYKD 373


>gi|21325574|dbj|BAC00195.1| Predicted permease [Corynebacterium glutamicum ATCC 13032]
          Length = 444

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 110/339 (32%), Gaps = 18/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF----FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R++++ I  V    + GF      PV+ AL++    WP         +  +    VI
Sbjct: 56  WALRFIVLVIAGVIALRMLGFIWVGILPVVLALLVCTVLWPPVKWLREH-KIPAALAVVI 114

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L       +      + K++V +  +  +  +             W       
Sbjct: 115 TILGFFALIGGVFAAIAPSVSSQTKQVVDQATVGIEDLMD------------WVQGPPFN 162

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    +   T +  +    I               +++  M++  FFF +DG    
Sbjct: 163 LDISQFEGALNDLTSMLQSQSSTIASGVFSGLSTASSIVVTLAVMLVLTFFFLKDGPRFL 222

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +          +  ++       +        ++++ + + +G    L GVP  +AL 
Sbjct: 223 PWMRGFTGENAGWHLTEVLTRTWNTLAGFIRAQALVSMVDAIFIGIGLLLLGVPMALALA 282

Query: 246 VITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT     IP    + +     I  L+   + NA  + +       I    L PFL    
Sbjct: 283 VITFFAGFIPIVGAVSAGALAVIIALVTNGVTNALLVLVLILAVQQIEGNILSPFLQSKA 342

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L        +  G    G++G F+   + A +AV  +
Sbjct: 343 MNLHAAVVLLSVTVGSTMFGIIGAFLAVPVAATLAVWVR 381


>gi|126739190|ref|ZP_01754884.1| membrane protein [Roseobacter sp. SK209-2-6]
 gi|126719807|gb|EBA16515.1| membrane protein [Roseobacter sp. SK209-2-6]
          Length = 361

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 114/342 (33%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I  + L+FL     P +    I +   PI     +    S      +  +  + +F
Sbjct: 14  ITAVIFALVLWFLGDVLLPFVLGAAIAYMIDPIADRLEA-MGLSRAGSTAVIIIVALVVF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + ++ +L   +  A +      +                          
Sbjct: 73  LATLLVILPTLIYQLIDLTRVLPEAFRDLRSFAQEHF----------PSLFTEGSRAQQT 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I S           +           ++  + ++ + +   +   D   +  ++D L   
Sbjct: 123 IASIAGTLQGKGIELAEGIVGSAASLVNVIVLMVIVPVVAVYLLLDWDRMVDRIDELVPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++R +  V+ S   GM  + +  G     A  + G+   +A+G I  ++  I
Sbjct: 183 DHQPVIRRLARDIDAVLHSFIHGMGTVCLILGSYYAVALMIVGLNFGLAVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+ ++   +    A    I    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWWSIGAVAAIFAFGQVIEGNYLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ +   + A + V+ +  +    E++
Sbjct: 303 LLLALSVFGALFGFVGMLVAVPIAAALGVLARFVVEQYLESR 344


>gi|323496843|ref|ZP_08101880.1| hypothetical protein VISI1226_21744 [Vibrio sinaloensis DSM 21326]
 gi|323318102|gb|EGA71076.1| hypothetical protein VISI1226_21744 [Vibrio sinaloensis DSM 21326]
          Length = 357

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/353 (13%), Positives = 115/353 (32%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      S    +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSQLS-RLGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V+  +    L +V +  L      ++  LV+ +             L      +   +
Sbjct: 69  AVVLVILGFSSLMLVAVFGLVPTIWQQVGNLVNDIPTMYLGLQSFIAELPQRYPELDNFQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESLVTNAKNQAIGMGETVLKGSLASLVSLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMIEMASGILP-RNRRLAYKVWHEMNEQISNYIRGKVMEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T     + L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAMVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  +     ++      G  G+F    L  L+  +W       +++
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHDEDD 352


>gi|290892784|ref|ZP_06555775.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290557596|gb|EFD91119.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 390

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTIAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +    ++S          T +  + I  I         + L    + 
Sbjct: 128 DEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTSVINSAISSIGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|163940666|ref|YP_001645550.1| hypothetical protein BcerKBAB4_2721 [Bacillus weihenstephanensis
           KBAB4]
 gi|163862863|gb|ABY43922.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
          Length = 361

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 123/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPLLVFLENK-KVPRGLAILLLYLFIITLTG 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S      +   +   I
Sbjct: 84  VAIGVVVPTISQQLMDLVKNMPTYIKEGKVYIQDLSHHRLFEWLSTQNYVSIETIEKNAI 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +       +   A+    I  +  L I  +   LF+ ++DG +   +  S+    
Sbjct: 144 EYLKEIPNT----LTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSVLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  + K  
Sbjct: 320 ILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKTKRSKRK 361


>gi|326789823|ref|YP_004307644.1| hypothetical protein Clole_0713 [Clostridium lentocellum DSM 5427]
 gi|326540587|gb|ADZ82446.1| protein of unknown function UPF0118 [Clostridium lentocellum DSM
           5427]
          Length = 417

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 109/350 (31%), Gaps = 15/350 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------------EESSTFLAVIAT 67
           IL     +    AP+L  L+I +   PI   F +              +   +   V   
Sbjct: 41  ILAFFKGIISIIAPILYGLLIAYLFNPIMIFFENYFIKWFKPSTVNQKKAIRSISIVAVY 100

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS---DIPGGMWASELWT 124
           + ++   I+   +L       +K+L + +     +       L    +        +L T
Sbjct: 101 ICIIGTVILMFRYLVPQITENIKDLSAALPDYANNLEEKINALEKSVNQSISGLPYQLDT 160

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +           T    N +  +   A        ++ + ++     L       +  
Sbjct: 161 SQVFTMIDPAKYLNTDFLGNIVSNLMGQAMSIVSSLFNWVMGLVIAFYVLMQKESFSYGT 220

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +   +L           +     ++    F+G  I +   G +      +   P  + L
Sbjct: 221 KRLCYTLLSRQKADKLIAVFSEGHEIFIKFFVGKFIDSFIIGAICFVGLSILDNPYAILL 280

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             I  ++ MIP   P+     ++ + +      A  + ++  +        L P ++G  
Sbjct: 281 SFIVGVLNMIPYFGPLLGAIPAVIITLFTGFMPAVVVGIFIFLLQQFDGLVLGPKILGDS 340

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           I L       G++ G    G LG+F    ++A++       +  +   K+
Sbjct: 341 IGLSPFWIISGILIGGALWGPLGMFFASPIIAVLLKNLNRYMDRVLSQKD 390


>gi|297616545|ref|YP_003701704.1| hypothetical protein Slip_0355 [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144382|gb|ADI01139.1| protein of unknown function UPF0118 [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 341

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 117/343 (34%), Gaps = 12/343 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +++      LY ++    P   A+++ +  +P+      +     ++  ++  +
Sbjct: 11  RYTVMILVVLATSYFLYLVRQVMTPFAVAVVLAYLVFPVVHRIE-RIGIGRSYAILLVYL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +      +     + E+  + + +         +   + ++     + +       
Sbjct: 70  GAAAVAGAVFYYAVPAMVREVGAVGALIPHYVGQAEQMAHRVENMAFNADSIDQMVDEAV 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                          + +  + R        F    LSIIF  I  F+  +D   I    
Sbjct: 130 ER-----------GRSYLYGLFRRFLEAIFNFAHSILSIIFAPILAFYLTKDWEKIRDGF 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +          K+ R +  V++    G  ++A+  G + G    L  V   + +G+I 
Sbjct: 179 LDILPVSARQDTIKLGRDIDGVLKEFIKGHLLVAVLVGSMTGLGAALLKVKFALLIGMIC 238

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A+  + P   PI     S+ L    +   A  +     +   +    L P ++GG + L 
Sbjct: 239 AVAELFPYFGPILGAIPSVGLAYAQSPRLAAYVAFIILVVQQVEASILSPRILGGKVGLH 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L   F L+ G    G+ G+ +   + A+I ++       + E
Sbjct: 299 PLVVVFALLAGGELYGIWGMLLAVPVAAVIKILGSFFFYKVVE 341


>gi|163868488|ref|YP_001609697.1| permease protein [Bartonella tribocorum CIP 105476]
 gi|161018144|emb|CAK01702.1| permease protein [Bartonella tribocorum CIP 105476]
          Length = 403

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 107/327 (32%), Gaps = 11/327 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   ++ ++       P ++ +++ +   PI      K      F  V+ T
Sbjct: 47  RQIFFWLGALIFFILFMFIFGSILLPFVAGIVLAYFLNPIVQLLE-KFGIRRVFGTVLIT 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + ++ +F+  L+ L      ++++ VS  + +                   +      + 
Sbjct: 106 LFIVIIFVAALIILIPIISWQIQQFVSDGLPVYMNRIQTFFVEHDFDWIRDYFGSDPNEL 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S+ + L         ++ I  +     + G   ++     +   +  F+   D   + +
Sbjct: 166 RSNIKGLLGE-----GSDFITSLLNSLLKSGKSIVNIVSLFVVAPVVTFYMLLDWPRMVR 220

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DSL         + I   + + I     G   + +  G        +AG+   + +G+
Sbjct: 221 AIDSLIPRDHLETVRSIFHEMDRAIAGFVRGQGTVCLILGGYYAIGLTIAGLNFGLLIGM 280

Query: 247 ITAIMAMIPGGAPISF----TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ IP    +S       ++       N      +     I  FI    L+P LVG
Sbjct: 281 FIGLISFIPYIGTMSGLLLSVGIAWVQFYPNNWGGIIVVLALFLIGQFIEGYVLQPKLVG 340

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             + L  +   F L       G  G+ 
Sbjct: 341 SSVGLHPVWLMFSLFAFSSLFGFTGML 367


>gi|91778780|ref|YP_553988.1| membrane transporter [Burkholderia xenovorans LB400]
 gi|91691440|gb|ABE34638.1| Putative membrane transport protein [Burkholderia xenovorans LB400]
          Length = 680

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 41/360 (11%), Positives = 106/360 (29%), Gaps = 30/360 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++   +   ++  LYF      P+  A+++ F   P+  +    +        V +  +
Sbjct: 27  GLIALAVGVTVVACLYFASAVLIPMTLAILLSFLVAPLADALTRLRLGH-----VASVFA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI---------------- 113
            + + +  +  L      ++ +L + +               ++                
Sbjct: 82  AVVMSVSVIGMLGAVIATQLTDLAAGMPRYQATIERKMETAHNLTIGKLNRFADAAGQAL 141

Query: 114 -------PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                  P      +  +   +H  +    +        +      A R     +    +
Sbjct: 142 QRATIEPPQPTPQRDSASAGSAHSAANPPAAVPVEVREPVPTPFELARRVLSPAISPLET 201

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              + + +         +  +   L           +     + +   F+    +  G G
Sbjct: 202 AFIVFVVMVVILLQRDDLRDRAIRLFGSRDLHRTTTVMDEAARRLSRYFVSQLGLNAGVG 261

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLW 284
           +V+G+  +L GVPS +  G++ A++ ++P         ++  L          A      
Sbjct: 262 VVIGTGLFLIGVPSPILWGILAALLRLVPYVGIWISATLATALAAAVSPGWSMAIWSLAL 321

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 +V + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 322 FVTVELLVGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRH 381


>gi|319946477|ref|ZP_08020714.1| membrane protein [Streptococcus australis ATCC 700641]
 gi|319747445|gb|EFV99701.1| membrane protein [Streptococcus australis ATCC 700641]
          Length = 375

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 113/340 (33%), Gaps = 6/340 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L A  + + + PI      K   +     ++  V++  L I  +
Sbjct: 30  LISPFVSVLNTIILPFLIAGFLYYITNPIVEFLEKKFHLNRILGILLTLVTLFGLIIYGI 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           +++    + ++  L++               LS  P     +      +        LS 
Sbjct: 90  VYILPILINQLTSLINSTQGLYWEVQSFVTKLSKNPAFQSIN------IQSTIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++    ++   I L +F  DG  +   L+         
Sbjct: 144 VDILQNILNSVTNSLGSVVSTIVNTLFILVMTPIFLVYFLIDGKKLLPMLERTILKNDRR 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   + + +     G++I A+  G +    Y   G+   +   + +A+  +IP   
Sbjct: 204 NITSLLVSLNQTVSRYISGISIDALIIGTLAFIGYSFIGLKYALVFAIFSALANLIPYIG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       +      +        ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PTIGLIPMVVTYAFTDFNMMVKAVIFMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++G+ +   + ++   I K      + +K+    
Sbjct: 324 SSNIYGVIGMIVAIPVYSIGKEIVKFLAALYENHKKTQKQ 363


>gi|293609875|ref|ZP_06692177.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828327|gb|EFF86690.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123103|gb|ADY82626.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 397

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 127/347 (36%), Gaps = 6/347 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + +++  LY LK    P + A  + +   P+    + K +        +  V
Sbjct: 7   RRIFLLAGIVLLVWVLYLLKPVVIPFIGAFFLAYLFSPLVDVLV-KMKLPRWLAISVVFV 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     + L +L      ++      +            +L  +       ++      
Sbjct: 66  GIGVTLTIALWYLVPLIWKQLVYARDSIPAGIHWINAT--FLPWVSSTFNVQQMEIDTEQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L
Sbjct: 124 LSKAVMEYVQTNYSADSIQAVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWERMLQNL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A   +I      V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEATTLQIVGECHSVLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +  +   + +   I   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVIASLFQFGLDWMHLLLVGIVFMIGQAVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +   F ++ G +  G LG+ I   + A+I V+ K      + +
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLKHLRENYERS 350


>gi|317484069|ref|ZP_07943001.1| hypothetical protein HMPREF0179_00352 [Bilophila wadsworthia 3_1_6]
 gi|316924675|gb|EFV45829.1| hypothetical protein HMPREF0179_00352 [Bilophila wadsworthia 3_1_6]
          Length = 391

 Score =  135 bits (341), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 75/345 (21%), Positives = 137/345 (39%), Gaps = 5/345 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +++ +  + L+ +  FF  +  A  IG    P+Y +   K        A I  +  
Sbjct: 12  AFLALLIGVTALFLWMMLPFFDVIFWAATIGILFHPVYRTIAEKWRMGRILSAFITILLC 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L I+PL ++ Y  ++E   L  ++       +     + D        + W  +  + 
Sbjct: 72  LVLIIIPLSYILYNCVVEATLLYQRLHSDQNSFVGYIDRIKDSYP---FLQDWLHYAGYD 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                   T    +   F+ R     G   L +  ++  ++   FF   DG  I + L  
Sbjct: 129 LERIKSLLTKAALSASSFLARNTVTLGENTLGFLTNLALVLYIAFFLLMDGTKIQELLIK 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     K + R   +V R+T  G  ++A  +G + G  +WL  + + +  GV+   
Sbjct: 189 ALP-FGDHREKLLFRKFAEVTRATVKGSLLVAAAQGALGGVIFWLLDIHAALLWGVVMTA 247

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +A+IP     + +  V++YLL+ G+ ++   L  +G+  + + D  LRP LVG   KLP 
Sbjct: 248 LALIPVVGAALVWGPVAVYLLLTGDYWDGGILLAYGSTVIGLADNILRPLLVGRDTKLPD 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                  +GG    G+ G   GP L  L   +W+  I     N  
Sbjct: 308 FLVLLSTLGGFVFFGMDGFVTGPTLAVLFVTVWQIFIAEFGANAP 352


>gi|228475955|ref|ZP_04060663.1| putative membrane protein [Staphylococcus hominis SK119]
 gi|228269778|gb|EEK11258.1| putative membrane protein [Staphylococcus hominis SK119]
          Length = 409

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 118/355 (33%), Gaps = 18/355 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWP------------IYSSFISKKEE 57
            ++  +++ I +     +   F P +   I    + P               + + +   
Sbjct: 35  ALVSLVLLGITIFIFDKISYVFQPFVI--IFNTIAAPIILSLILYYLLNPVINLMERYNI 92

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  I  + ++    + +  L      ++K+L +      +        ++ +    
Sbjct: 93  PRLLAIAIVFLVIIGGATLIIDLLIPVIGDQIKQLANNFPKYIEKFNRAIDKVTHM---- 148

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +   +             L ++           F    ++  + I      LFF 
Sbjct: 149 SILSSFYNQIQDWLDSTSKKIPSLTSDYFSGFGTKIRTFAEAVVNVGVVIATTPFVLFFM 208

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG         +    F   +  +   +   + S   G  I++   G++L   Y + G
Sbjct: 209 LKDGTKFRDYTTKIVPPKFRKDYHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSIIG 268

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + L  I A+ +++P   P    + +I + I  + F    L +   +  FI    + 
Sbjct: 269 LDYGLVLASIAAVTSVVPYLGPTIAISPAIIIAIITSPFMLLKLIIVWTLVQFIEGHFIS 328

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K  
Sbjct: 329 PNIMGKTLKIHPLTIIFILLSAGNLLGIVGVILGIPGYAILKVLVSHIFLLFKRR 383


>gi|116251363|ref|YP_767201.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256011|emb|CAK07092.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 374

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 104/326 (31%), Gaps = 9/326 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L  Q       +   +  LY       P ++ + I +   P+      +   S     +
Sbjct: 9   ILKRQIFFWLAALVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATI 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              V+ + +F + L+ L    + +  +   ++               +     W      
Sbjct: 68  GILVAFVIVFTLALMILIPVLISQFNDFAQRLPGYISQLQQFITQAQNSLLPDWVENQMG 127

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +   +      FL       +       G   +D    ++   +  F+   D   +
Sbjct: 128 TIKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRM 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++D      + +  ++I++ + + I     G   + +  G+   +   L G+   + +
Sbjct: 183 IAKVDQWIPRDYVSDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLI 242

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G+   +++ IP    +    +++ +       +      + +      F+    L+P LV
Sbjct: 243 GLFAGMISFIPYVGSMVGLVLAVGVALVQFWPDYPWIGLVLVVFFSGQFLEGNILQPKLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG 327
           G  + L  +   F L       G +G
Sbjct: 303 GSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|315613061|ref|ZP_07887972.1| membrane protein [Streptococcus sanguinis ATCC 49296]
 gi|315315171|gb|EFU63212.1| membrane protein [Streptococcus sanguinis ATCC 49296]
          Length = 388

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVLAISIVFVVIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQVIVAVI----IVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|262278141|ref|ZP_06055926.1| permease [Acinetobacter calcoaceticus RUH2202]
 gi|262258492|gb|EEY77225.1| permease [Acinetobacter calcoaceticus RUH2202]
          Length = 397

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 130/347 (37%), Gaps = 6/347 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + +++  LY LK    P + A  + +   P+    + K +        +  +
Sbjct: 7   RRIFLLAGIVLLVWVLYLLKPVVIPFIGAFFLAYLFSPLVDVLV-KIKLPRWLAISVVFI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     + L +L      ++      +                    + A E+ T+ +S
Sbjct: 66  GIGVTLTIALWYLVPLIWKQLVYARDSIPAGIHWINATFLPWVSSTFNLQAMEIDTEQMS 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++    +T    + I  +    ++ G+ F+    +++ + I  F+F  D   + Q L
Sbjct: 126 --KAVMEYVQTNYSADSIQSVLLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A   +I      V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRRYEANTLQIVGECHSVLGAFVKGQFLVMLLLGIVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +  +   + +   I   I    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFAVGIIAAVIASLFQFGLDWMHLLLVGVVFMIGQAIEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  +   F ++ G +  G LG+ I   + A+I V+ K      + +
Sbjct: 304 GLSPVAVVFAVLAGAQLAGFLGMLIALPVAAVIVVLLKHLRDNYERS 350


>gi|239998962|ref|ZP_04718886.1| Transporter, putative [Neisseria gonorrhoeae 35/02]
 gi|240112881|ref|ZP_04727371.1| Transporter, putative [Neisseria gonorrhoeae MS11]
 gi|240125733|ref|ZP_04738619.1| Transporter, putative [Neisseria gonorrhoeae SK-92-679]
 gi|254493752|ref|ZP_05106923.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268594809|ref|ZP_06128976.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268598966|ref|ZP_06133133.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268684330|ref|ZP_06151192.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
 gi|226512792|gb|EEH62137.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
 gi|268548198|gb|EEZ43616.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
 gi|268583097|gb|EEZ47773.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
 gi|268624614|gb|EEZ57014.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
          Length = 356

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 117/337 (34%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  +Y L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFIQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             + T   +N +        + G   +    +++   + L++F  D    S  +  L   
Sbjct: 131 FQAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+     MG +G+  G  L A+  V+ +E     
Sbjct: 311 IFSLMAFGELMGFVGMLAGLPLAAVTLVLLREGAQKY 347


>gi|325955134|ref|YP_004238794.1| hypothetical protein Weevi_1516 [Weeksella virosa DSM 16922]
 gi|323437752|gb|ADX68216.1| protein of unknown function UPF0118 [Weeksella virosa DSM 16922]
          Length = 417

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 112/332 (33%), Gaps = 14/332 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + +  +       K    P++   ++     PI +    K        ++++ +  + +
Sbjct: 34  LVSLVTLFYISIVGKSIIVPLIIGFLLSMVLLPIANFLERKLRFPRIVSSLLSPIMFVLV 93

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  L      ++ +  +++    +  I +              +   +  +  +  
Sbjct: 94  VLGVMFLLG----TQIVQFQNELPELQKQLIDLFHKTQ---------QFIAEQFNVTEQE 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           ++        + I                   S +F+ +  FFF      +++ +     
Sbjct: 141 QLNYLKKNTESTIKHGGAVVGDVVSTMTTVIGSSVFVFLYTFFFLLYRSHLTKFIVWCFP 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + +   +  +I+   +G+ I      + L +A+ + G+        +  ++ +
Sbjct: 201 PSEQKKVRNVVSSIQSIIKQYIVGLGIQITFITVALFTAFSIIGIKYAFFFAALCGLLNL 260

Query: 254 IPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP     S T ++  + L      NA  + +   +   I    L P ++G  + L     
Sbjct: 261 IPYIGIFSATVLATLVTLATNEPINALWVVISVIVVNSIDGNILTPKVIGSKVSLNSFVV 320

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            FG++      G+ G+F+   ++A+  +++  
Sbjct: 321 LFGIIVAESIWGMAGMFLAIPILAIARIVFDA 352


>gi|228908670|ref|ZP_04072507.1| hypothetical protein bthur0013_28290 [Bacillus thuringiensis IBL
           200]
 gi|229046614|ref|ZP_04192264.1| hypothetical protein bcere0027_26370 [Bacillus cereus AH676]
 gi|229070388|ref|ZP_04203633.1| hypothetical protein bcere0025_25740 [Bacillus cereus F65185]
 gi|229080100|ref|ZP_04212628.1| hypothetical protein bcere0023_27480 [Bacillus cereus Rock4-2]
 gi|229145489|ref|ZP_04273873.1| hypothetical protein bcere0012_26420 [Bacillus cereus BDRD-ST24]
 gi|229151127|ref|ZP_04279334.1| hypothetical protein bcere0011_26740 [Bacillus cereus m1550]
 gi|229179199|ref|ZP_04306553.1| hypothetical protein bcere0005_25490 [Bacillus cereus 172560W]
 gi|228604097|gb|EEK61564.1| hypothetical protein bcere0005_25490 [Bacillus cereus 172560W]
 gi|228632341|gb|EEK88963.1| hypothetical protein bcere0011_26740 [Bacillus cereus m1550]
 gi|228637942|gb|EEK94388.1| hypothetical protein bcere0012_26420 [Bacillus cereus BDRD-ST24]
 gi|228703224|gb|EEL55682.1| hypothetical protein bcere0023_27480 [Bacillus cereus Rock4-2]
 gi|228712742|gb|EEL64672.1| hypothetical protein bcere0025_25740 [Bacillus cereus F65185]
 gi|228724701|gb|EEL76008.1| hypothetical protein bcere0027_26370 [Bacillus cereus AH676]
 gi|228851011|gb|EEM95828.1| hypothetical protein bthur0013_28290 [Bacillus thuringiensis IBL
           200]
          Length = 348

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|229091915|ref|ZP_04223103.1| hypothetical protein bcere0021_27100 [Bacillus cereus Rock3-42]
 gi|228691396|gb|EEL45156.1| hypothetical protein bcere0021_27100 [Bacillus cereus Rock3-42]
          Length = 348

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|194098586|ref|YP_002001648.1| Transporter, putative [Neisseria gonorrhoeae NCCP11945]
 gi|193933876|gb|ACF29700.1| Transporter, putative [Neisseria gonorrhoeae NCCP11945]
 gi|317164255|gb|ADV07796.1| Transporter, putative [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 359

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 117/337 (34%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  +Y L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 20  AAFAALVWLVYALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 79  LALLLIIVPMLVGQFNNLASRLPQLIGFIQNTL-----LPWLKNTIGGYVEIDQASIIAW 133

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             + T   +N +        + G   +    +++   + L++F  D    S  +  L   
Sbjct: 134 FQAHTGELSNALKAWFPVLMKQGGNIVSSIGNLLLPPLLLYYFLLDWQRWSCGIAKLVPR 193

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 194 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 253

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 254 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+     MG +G+  G  L A+  V+ +E     
Sbjct: 314 IFSLMAFGELMGFVGMLAGLPLAAVTLVLLREGAQKY 350


>gi|116747741|ref|YP_844428.1| hypothetical protein Sfum_0292 [Syntrophobacter fumaroxidans MPOB]
 gi|116696805|gb|ABK15993.1| protein of unknown function UPF0118 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 391

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 135/349 (38%), Gaps = 2/349 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  ++ + + ++   L  F   ++ +++I    +P+ +  + K     T  A+     +
Sbjct: 21  FLLVVLFYSLYLTYLILHPFLDTLIMSIVISSLFYPLQTWLVKKYRGRQTLAALTIVFII 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSH 129
             +  +P+ F     + +  + ++++    + G I        +   M   +     L  
Sbjct: 81  TFVIAIPIFFFASTLIAQGVQTINQINDWLRAGNIQKLAQDPRVMELMDWVQTRLSFLDL 140

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +     +   L  N   F+   A+               ++   F+  RDG ++     
Sbjct: 141 KKLDVSSNIMALSKNFGQFVLSRAATILGNVASLVTHFFILVFISFYLVRDGAAMLDAAR 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L      ++   +  V RS  +G  + A+ +GL+ G    L G+P      V+  
Sbjct: 201 GFSP-LRKDQEDRLLGGIRVVARSVLMGAFMTALCQGLIGGIGVALIGLPGLFWGTVMGF 259

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +   G  + +  ++ YL++ G   +A  L +W  + +  +D  +RP+L+ G   L  
Sbjct: 260 ASFIPIVGTALVWVPMAAYLVLLGTWKSALFLAIWCIVLVGSIDNFVRPYLMRGQSNLSP 319

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              F  ++G V+  GL G+  GP++++   ++        +E+  +  S
Sbjct: 320 FYIFLSIIGAVQYFGLTGILYGPLIVSFAMIMLYLYGAEYREDLAESKS 368


>gi|15901352|ref|NP_345956.1| hypothetical protein SP_1505 [Streptococcus pneumoniae TIGR4]
 gi|15903400|ref|NP_358950.1| hypothetical protein spr1357 [Streptococcus pneumoniae R6]
 gi|116517014|ref|YP_816794.1| hypothetical protein SPD_1332 [Streptococcus pneumoniae D39]
 gi|148984848|ref|ZP_01818101.1| hypothetical protein CGSSp3BS71_09436 [Streptococcus pneumoniae
           SP3-BS71]
 gi|148988549|ref|ZP_01819982.1| hypothetical protein CGSSp6BS73_08494 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148992611|ref|ZP_01822279.1| hypothetical protein CGSSp9BS68_04385 [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997435|ref|ZP_01825040.1| hypothetical protein CGSSp11BS70_01067 [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003282|ref|ZP_01828178.1| hypothetical protein CGSSp14BS69_02714 [Streptococcus pneumoniae
           SP14-BS69]
 gi|149008127|ref|ZP_01831658.1| hypothetical protein CGSSp18BS74_08355 [Streptococcus pneumoniae
           SP18-BS74]
 gi|149021771|ref|ZP_01835778.1| hypothetical protein CGSSp23BS72_09413 [Streptococcus pneumoniae
           SP23-BS72]
 gi|168483886|ref|ZP_02708838.1| transport protein [Streptococcus pneumoniae CDC1873-00]
 gi|168489665|ref|ZP_02713864.1| transport protein [Streptococcus pneumoniae SP195]
 gi|168493404|ref|ZP_02717547.1| transport protein [Streptococcus pneumoniae CDC3059-06]
 gi|168575960|ref|ZP_02721875.1| transport protein [Streptococcus pneumoniae MLV-016]
 gi|169832381|ref|YP_001694911.1| transport protein [Streptococcus pneumoniae Hungary19A-6]
 gi|194397569|ref|YP_002038134.1| hypothetical protein SPG_1427 [Streptococcus pneumoniae G54]
 gi|221232217|ref|YP_002511370.1| hypothetical protein SPN23F_14690 [Streptococcus pneumoniae ATCC
           700669]
 gi|225857130|ref|YP_002738641.1| transport protein [Streptococcus pneumoniae P1031]
 gi|225859262|ref|YP_002740772.1| transport protein [Streptococcus pneumoniae 70585]
 gi|225861338|ref|YP_002742847.1| transport protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649210|ref|ZP_04523462.1| transport protein [Streptococcus pneumoniae CCRI 1974]
 gi|237821819|ref|ZP_04597664.1| transport protein [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230580|ref|ZP_06964261.1| transport protein [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298255875|ref|ZP_06979461.1| transport protein [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298503240|ref|YP_003725180.1| permease [Streptococcus pneumoniae TCH8431/19A]
 gi|307068149|ref|YP_003877115.1| putative permease [Streptococcus pneumoniae AP200]
 gi|307126929|ref|YP_003878960.1| transport protein [Streptococcus pneumoniae 670-6B]
 gi|14972994|gb|AAK75596.1| membrane protein [Streptococcus pneumoniae TIGR4]
 gi|15459004|gb|AAL00161.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116077590|gb|ABJ55310.1| membrane protein, putative [Streptococcus pneumoniae D39]
 gi|147756490|gb|EDK63531.1| hypothetical protein CGSSp11BS70_01067 [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758742|gb|EDK65739.1| hypothetical protein CGSSp14BS69_02714 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760433|gb|EDK67411.1| hypothetical protein CGSSp18BS74_08355 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147922870|gb|EDK73986.1| hypothetical protein CGSSp3BS71_09436 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925750|gb|EDK76825.1| hypothetical protein CGSSp6BS73_08494 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147928628|gb|EDK79642.1| hypothetical protein CGSSp9BS68_04385 [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930007|gb|EDK80994.1| hypothetical protein CGSSp23BS72_09413 [Streptococcus pneumoniae
           SP23-BS72]
 gi|168994883|gb|ACA35495.1| transport protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172042748|gb|EDT50794.1| transport protein [Streptococcus pneumoniae CDC1873-00]
 gi|183571988|gb|EDT92516.1| transport protein [Streptococcus pneumoniae SP195]
 gi|183576790|gb|EDT97318.1| transport protein [Streptococcus pneumoniae CDC3059-06]
 gi|183578167|gb|EDT98695.1| transport protein [Streptococcus pneumoniae MLV-016]
 gi|194357236|gb|ACF55684.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
 gi|220674678|emb|CAR69251.1| putative membrane protein [Streptococcus pneumoniae ATCC 700669]
 gi|225720027|gb|ACO15881.1| transport protein [Streptococcus pneumoniae 70585]
 gi|225725463|gb|ACO21315.1| transport protein [Streptococcus pneumoniae P1031]
 gi|225727330|gb|ACO23181.1| transport protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238835|gb|ADI69966.1| permease [Streptococcus pneumoniae TCH8431/19A]
 gi|301794517|emb|CBW36959.1| putative membrane protein [Streptococcus pneumoniae INV104]
 gi|301800341|emb|CBW32970.1| putative membrane protein [Streptococcus pneumoniae OXC141]
 gi|301802225|emb|CBW34975.1| putative membrane protein [Streptococcus pneumoniae INV200]
 gi|306409686|gb|ADM85113.1| Predicted permease [Streptococcus pneumoniae AP200]
 gi|306483991|gb|ADM90860.1| transport protein [Streptococcus pneumoniae 670-6B]
 gi|327389688|gb|EGE88033.1| hypothetical protein SPAR5_1378 [Streptococcus pneumoniae GA04375]
 gi|332072296|gb|EGI82779.1| hypothetical protein SPAR50_1465 [Streptococcus pneumoniae GA17570]
 gi|332073839|gb|EGI84317.1| hypothetical protein SPAR68_1511 [Streptococcus pneumoniae GA41301]
 gi|332074253|gb|EGI84730.1| hypothetical protein SPAR148_1427 [Streptococcus pneumoniae
           GA17545]
          Length = 388

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KVNRVIAITIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    +   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VLASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRNYLTQFIPRK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|315179430|gb|ADT86344.1| permease PerM [Vibrio furnissii NCTC 11218]
          Length = 357

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 112/356 (31%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+F   +++YF     AP+L A+++ +             +   TF
Sbjct: 10  KRRFSDPHAVSLVAILFFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVQLCRW-KIPRTF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  V+ + + +  +  L      ++  L++ +             L D    + + E
Sbjct: 69  AVILVIVAFIGVMLFAVFGLVPTIWQQIVNLINDIPNMYTGLQKFIATLPDRYPELASLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+             + ++  L FF    
Sbjct: 129 IVEPIMNNAKNKALSMGESVVKGSLASLVSIAT---------LAVYLILVPLLVFFLLKD 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                ++             ++   + + I +   G  +  +  G V    + +  +   
Sbjct: 180 KQEMLRIVRGVLPRNRKLATEVWHEMNQQISNYIRGKVLEILIVGGVSYVTFAVLELRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V      +IP       T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGFSVLIPYIGAAVVTVPVAIVALFQWGVTPEFYYLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +WK      +E  + 
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEPPQT 355


>gi|228946519|ref|ZP_04108834.1| hypothetical protein bthur0007_26630 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228813132|gb|EEM59438.1| hypothetical protein bthur0007_26630 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 348

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKIYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y++  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|292491790|ref|YP_003527229.1| hypothetical protein Nhal_1718 [Nitrosococcus halophilus Nc4]
 gi|291580385|gb|ADE14842.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 377

 Score =  135 bits (341), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 103/303 (33%), Gaps = 9/303 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P ++ + + +   P+      K   S T    + TV  +   IV LL L      
Sbjct: 25  REILLPFVAGIAVAYLIDPLCDRLEDK-GWSRTVATSLVTVGFILAVIVVLLLLVPLLRN 83

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  L+  +              S  P      E W+  +S  ++        + +  + 
Sbjct: 84  QIMHLIEVLPSLIARVQD-----STWPWLQTLQERWSVDISQLETTAREQAGTVVSWIVQ 138

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            + +  S  G+   +    I    +  F+  RD  ++  ++D L    +    ++  +++
Sbjct: 139 ALGKLLSS-GLALANLLSLIFITPVVAFYLLRDWNNLVARVDDLLPRKYAPVIREQVKLI 197

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V+     G   + +  G        L G+   + +G+   +++ IP    I      I
Sbjct: 198 DRVLSGFIRGQASVCLLLGTFYAVGLTLIGLDFGLMVGMSAGLLSFIPYVGTIIGFIAGI 257

Query: 268 YLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            L             +     +   +    L P LVG  + L  +   F L+ G    G 
Sbjct: 258 GLAFVQFSEWTPIALVAGVFVVGQILEGNFLTPRLVGTRVGLHPVMVIFALLAGGALFGF 317

Query: 326 LGL 328
           LG+
Sbjct: 318 LGI 320


>gi|228986008|ref|ZP_04146153.1| hypothetical protein bthur0001_26960 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229156497|ref|ZP_04284588.1| hypothetical protein bcere0010_26830 [Bacillus cereus ATCC 4342]
 gi|228627000|gb|EEK83736.1| hypothetical protein bcere0010_26830 [Bacillus cereus ATCC 4342]
 gi|228773720|gb|EEM22141.1| hypothetical protein bthur0001_26960 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 348

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|40063569|gb|AAR38358.1| permease, putative [uncultured marine bacterium 582]
          Length = 361

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 110/342 (32%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I+  +L+FL     P L    + +   P+      +   S     V  TVSV+ +F
Sbjct: 20  IATAILFGALWFLGDILMPFLLGGAVAYFLDPVADRLE-RLGLSRLLATVCITVSVILVF 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           IV    +    + +   L        +                                 
Sbjct: 79  IVFAFLVIPTLVQQAVTLFDTAPRLVRELQEFLTT----------QFPSLVDSESTLRKS 128

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +L+      N    + +         ++  L ++ + +  F+   D   +   +D +   
Sbjct: 129 LLALGDQVQNKGGQLLKSLLTSAASLINIALLLVIVPVVTFYLLYDWDRLVATIDDMLPR 188

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + ++  + + + S   GM  + +  G     A  L G+   + +G I  ++  I
Sbjct: 189 DHADVVRGLALEIDQTLASFVRGMGTVCLILGTYYALALMLVGLQFGLVVGFIAGLVTFI 248

Query: 255 PGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   +++I        G+  +   +         I    L P LVG  + L  + 
Sbjct: 249 PYVGALVGGSLAIGLGLFQFWGDWVSLGLVGAIFVTGQMIEGNYLTPKLVGLSVGLHPVW 308

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F L       G  G+ +   + A I V+ + +I   K ++
Sbjct: 309 LLFALSVFGSLFGFAGMLVAVPVAAAIGVLTRFAIGRYKRSR 350


>gi|293365292|ref|ZP_06612009.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307703832|ref|ZP_07640773.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316742|gb|EFE57178.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307622667|gb|EFO01663.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 388

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQVIVAVI----IVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|293402296|ref|ZP_06646434.1| membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304403|gb|EFE45654.1| membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 403

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/370 (15%), Positives = 114/370 (30%), Gaps = 20/370 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILV--------SLYFLKGFFAPVLSALIIGFTSWPIYSSFI 52
           MR+ M     ++   I               +  +     P +    I F          
Sbjct: 9   MRKKMWMAIIVIAAGITIFFAFDKFSLLWNGIKSICSLTTPFILGFAIAFLLNKPMEFIE 68

Query: 53  SKKEE--------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            K                A++A +  + +    L  L    M  +  LV       +   
Sbjct: 69  HKLLGKLPLKKEHRRNIAAILAVLLGIIIVGAFLAMLIPQLMESILSLVKAFPGYMEDTQ 128

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                  +                  Q+  +   T   T+ +  + ++  +FG   LD  
Sbjct: 129 EFINDFIE----ENGIAAEEITKMLSQNNLLTRMTEFVTDAVPKMLKYTYQFGSTLLDIV 184

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L I+  +  L    R      +   +L       Y  +++     +  +  +G  I ++ 
Sbjct: 185 LGIMSGLYMLIDKERLMGYAKRINYALFPIEIAEYLHRMTLASGDIFNNFIVGKAIDSLI 244

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G++      +   P  + L V   +  MIP   P       I +L   +   A    L+
Sbjct: 245 IGILCYIGSLIFQFPYALLLSVFVGVTNMIPVFGPFIGAVPGIVILFIIHPITALYFALF 304

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +        L P ++G  + LP +   F +  G    G++G+FIG    A+I    +E
Sbjct: 305 IFVLQQFDGNILGPLILGDKLGLPSIGILFSVCVGGGLFGIIGMFIGVPCFAVIYAAVRE 364

Query: 345 SIMAIKENKE 354
            +    + K+
Sbjct: 365 FVNYRLKQKK 374


>gi|229818431|ref|ZP_04448712.1| hypothetical protein BIFANG_03738 [Bifidobacterium angulatum DSM
           20098]
 gi|229784301|gb|EEP20415.1| hypothetical protein BIFANG_03738 [Bifidobacterium angulatum DSM
           20098]
          Length = 535

 Score =  135 bits (341), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/348 (11%), Positives = 106/348 (30%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  ++    +     +      +L AL +     P+  + +S         A+
Sbjct: 54  RALLYIAMAIVLFSYCWRSWGSVAYLIYDILIALFLALAIEPMVKALVSH-GWKRGVAAL 112

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++   V+    V LL      + ++  L S +    +                   + ++
Sbjct: 113 LSFTVVIVAACVLLLLFGNMFIQQVIALFSGLPDMYEQTRQFI------------MQRFS 160

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    +L       ++++ +      A           + +  +I+  F+    G  +
Sbjct: 161 FVLPEIDNLGPEILKNIQSSWVSDFAGQALHTVSGVSAAFIDVTTVIMVTFYISAAGPKL 220

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +              +  +    I S     T++A+      G+   +  VP  + L
Sbjct: 221 RRSVCQWFAPSAQRRILTVWTVAQDQISSFLFSRTVLAVLNAACTGAFLVIMKVPYWLPL 280

Query: 245 GVITAIMA-MIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + + I++  IP        A  +        +     + ++  +   I +    P +  
Sbjct: 281 ALFSGIVSQFIPMIGTFVGGAAPVLFACANNGLGVGIAVIVFITVYQQIENFIFLPKISQ 340

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G +G F+   + A I VI         
Sbjct: 341 RTMDINEAVAFISVLFFGSLFGAVGAFLALPIAASIQVIVHAGTRRYD 388


>gi|327480919|gb|AEA84229.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 353

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 74/347 (21%), Positives = 147/347 (42%), Gaps = 3/347 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q +   +++ + L   + L  F+  V  A+I+     P+      +  +     A+   
Sbjct: 7   EQKVFLALLVVVSLAFGWILLPFYGAVFWAVILAIIFAPLQRYLYRRFSQRRNLTALFTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + ++P++ +    + E   L  ++         +   L ++      ++L     
Sbjct: 67  LVCLLVAVLPVILITGMLVQEGATLYKQIKSGELDIGRLVSGLRELLPQSVQAQLQRFGF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               S++    +     G  F+   A  FG     + +S   M+  LFFF RDG  +  +
Sbjct: 127 GDLDSMRERLASGALE-GSQFLATKAFSFGQGTFQFLISFFVMLYLLFFFIRDGRELVAR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L  A   ++     +V+R+T  G  ++A+ +G + G  + + G+   +  GV+
Sbjct: 186 IRKAIP-LSDAQKTRLFNKFTRVVRATVKGNIVVAVTQGALGGIIFAVLGISGALLWGVL 244

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     + +T V+IY L+ G I+    L L+G + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLLPAVGAGLIWTPVAIYFLMTGAIWQGVILTLYGVLVIGLVDNILRPILVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +P        +GG+   GL G  IGP++ AL    W       +   
Sbjct: 305 MPDYVVLISTLGGLALFGLNGFVIGPLVAALFISTWGLFTSPEEPPP 351


>gi|225575173|ref|ZP_03783783.1| hypothetical protein RUMHYD_03262 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037640|gb|EEG47886.1| hypothetical protein RUMHYD_03262 [Blautia hydrogenotrophica DSM
           10507]
          Length = 388

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 114/346 (32%), Gaps = 10/346 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----STFLAVIATVSVMCLF 74
           +L  +  L     P +    + F           K           F   ++ +  +CL 
Sbjct: 31  VLGIVGLLWQILFPFVLGAAMAFILNVPMHFLEEKLFVRKDGSKRRFARPVSLIGALCLV 90

Query: 75  IVPLLFLFYYGMLEMK-ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           +  +L +    + E+   LV+           V RW +++         W   L      
Sbjct: 91  VCIILLVVLVVVPELGKTLVALGKTIESTVPQVQRWAAELFQDNEQISEWIAQLDLDWHK 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI----SQQLD 189
            + S   +  NG   +        M  +    +     +   +       +       L 
Sbjct: 151 ALASALDVLRNGASSVLSSTWTVTMGIVKAMTNGCIGFVFACYILLQKEKLGRQVKMALR 210

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++       Y   +  +  +   +   G  I A+  G +      +   P  + +GV+  
Sbjct: 211 AILPEKSETYTFHVLSLSYRTFANFVTGQCIEAVILGTMFFVLLTILKFPYALLIGVLIG 270

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             A+IP        AVS+ LL+  +   A    +   I   I    + P +VGG + LP 
Sbjct: 271 FTALIPIFGAFIGCAVSVLLLLMVSPAKALIFIVIFLILQQIEGNLIYPHVVGGSVGLPS 330

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +     +  G   MG+ G+ I   L +++  +++E +    E ++K
Sbjct: 331 IWVLVAVTVGGNLMGVAGMLIFIPLTSVVYSLFREWVHYRLEIRKK 376


>gi|323527960|ref|YP_004230112.1| hypothetical protein BC1001_3639 [Burkholderia sp. CCGE1001]
 gi|323384962|gb|ADX57052.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 690

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 102/352 (28%), Gaps = 19/352 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +    +  LYF +    P+  A+++ F   P+  S    K       +V A V 
Sbjct: 24  ALIALAVGAGFVACLYFARAVLIPMTLAILLSFLVAPLVKSLGRLKLGH--VASVFAAVV 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +    I  L  +    + E+   + +     +  +     L+      +A          
Sbjct: 82  MSVSVIGVLGAVITMQLTELAAGMPRYQATIERKMEAAHTLTVGKLDRFAKAAGQALQRA 141

Query: 130 PQSLKILSETFLKTNGIDFIPR---------------FASRFGMIFLDYCLSIIFMIIAL 174
                        ++     P                 A R     +    +   + + +
Sbjct: 142 TVEPSQPEPRHDASSADGRAPAAVPVEVREPVPTPLEVARRVLSPAISPLETAFIVFVVM 201

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                    +  +   L           +     + +   F+    +  G G+ +G+  +
Sbjct: 202 VVILLQRDDLRDRAIRLFGSRDLHRTTMVMDEAARRLSRYFVSQLGLNAGLGVAIGAGLF 261

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIV 292
             GVPS +  G++ A++ ++P        A++  L          A            +V
Sbjct: 262 FIGVPSPILWGILAALLRLVPYVGIWIAGALATALAAAVSPGWDMAVWSIALFVTVELLV 321

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 322 GQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRH 373


>gi|148559405|ref|YP_001258693.1| putative permease [Brucella ovis ATCC 25840]
 gi|148370662|gb|ABQ60641.1| putative permease [Brucella ovis ATCC 25840]
          Length = 382

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 99/325 (30%), Gaps = 9/325 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 13  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +           +     T   
Sbjct: 72  LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLLANRDSEWLKKYIGIDSTVIQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  SL            +  + +     G   +D     +   +  F+   D   +   
Sbjct: 132 QNLSSLLQQ-----GAGFLSTLLQSLWNSGKSLIDIAGLFVVTPVVAFYMLLDWDRMVNS 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          ++I+R +   +     G   + +  G        L G+   + +G  
Sbjct: 187 IDSWVPRKQLHTVRRIAREMNAAVAGFIRGQGTLCLILGTYYAIGLTLTGLSFGLLIGFF 246

Query: 248 TAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP        A++I    +    +      +     +  FI    L+P LVG  
Sbjct: 247 AGLISFIPYIGSFVGLALAIGVVLVQFWPDWIMVCTVAAVFFLGQFIEGNILQPKLVGSS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLF 329
           + L  +   F L       G  G+ 
Sbjct: 307 VGLHPVWLMFALFAFGSLFGFTGML 331


>gi|195978343|ref|YP_002123587.1| hypothetical protein Sez_1234 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195975048|gb|ACG62574.1| hypothetical protein Sez_1234 [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 393

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ + + P+      K   + T    I    V+ LF 
Sbjct: 43  ISFLFTPILSFLTIIMLPLVISTILYYLTKPLVDMVE-KLGPNRTASIFIVFGLVILLFF 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         +++  V  +             L +    +         L+      +
Sbjct: 102 WAISGFIPMIQDQLRSFVEDLPKYVAKVNLEANKLLENEWLVSYRSNLQDMLTSMSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +   +S   +     +F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAIIMSPFILF----YFLRDSGHMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  GL+    + L G+   +  G+I   + MIP
Sbjct: 218 LRQPMARVLGEINKQLSGYVQGQVTVAIVVGLMFSVMFSLVGLNYSITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMGMVQGPLMLIKVLIIFVIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPVYASVKVVVKELFDWYKD 373


>gi|77464353|ref|YP_353857.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388771|gb|ABA79956.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides 2.4.1]
          Length = 375

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 108/329 (32%), Gaps = 14/329 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P +    I +   PI      +   S      + +V+++ + ++ +L +    + 
Sbjct: 44  GDVILPFIVGGAIAYFLDPIADRLE-RAGLSRVAATALISVAMLLVVVLLVLSVIPTLVS 102

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  L+       +                          +      +LS          
Sbjct: 103 QLTALIDAAPTIFRQLHSFLLDHF----------PQLSDETSTARQTLLSIGDTIKERGG 152

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +           ++  + ++ + +  F+   D   +  ++DS          ++++R +
Sbjct: 153 EVANTLLTSAYGVINAMIFMVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRRLAREI 212

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V+     G   + +  G     A    G+   + +G I   +  IP    +   A++I
Sbjct: 213 DEVLAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAI 272

Query: 268 YLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            L      G+  +   +    A+  F+    + P LVGG + L  L   F L       G
Sbjct: 273 GLALFQFWGDWLSIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFG 332

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +G+ +   + A I V+ +  I     ++
Sbjct: 333 FVGMLVAVPVAAAIGVLARFGIRQYTSSR 361


>gi|294669221|ref|ZP_06734301.1| acetyltransferase, GNAT family [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308853|gb|EFE50096.1| acetyltransferase, GNAT family [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 377

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 119/333 (35%), Gaps = 8/333 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   +    +  L+    P + A ++ +   P+      K   S    +++  +  + +
Sbjct: 37  AVFFIVASWLVLALRDILTPFIVAAVLAYILNPLVEKLRDK-GVSRAPASMLVMMFALLI 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  LL L    + + + L +++               +   G          L+  QS 
Sbjct: 96  LLALLLILIPMLLTQFQNLTNRLPQLIDFVQNKALPWFNSHFGAHIPLNKETLLNWLQS- 154

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T    N    I       G        ++  + + L++F  D    S  + +L  
Sbjct: 155 ----HTGTLQNTASKIAPTLMEQGGALASGLSNLALLPLLLYYFLYDWQRWSHGIRALMP 210

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             F   + +I   + +V+     G  ++ +  G+V G    L G+ S  A+G+I  ++  
Sbjct: 211 RRFIDAYTRIGGEIDEVLGEFLRGQLMVMLIMGVVYGVGLMLTGLDSGFAIGMIAGLLVF 270

Query: 254 IPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP     +   ++        G+      ++L   +   +    + P +VG  I L    
Sbjct: 271 IPYLGAFTGLLLATIAALLQFGSWQGLIWVWLVFVVGQLLESFLVTPKIVGDRIGLSPFW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F L+   + MG +G+ IG  L A+  V+ +E
Sbjct: 331 VIFSLMAFGQLMGFVGMLIGLPLAAICLVLLRE 363


>gi|160938088|ref|ZP_02085445.1| hypothetical protein CLOBOL_02983 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439082|gb|EDP16837.1| hypothetical protein CLOBOL_02983 [Clostridium bolteae ATCC
           BAA-613]
          Length = 415

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 102/345 (29%), Gaps = 17/345 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSS--------FISKKE-------ESSTFLAVIATVSVM 71
           +     P++   ++ +   PIY+              +        +     +++ + ++
Sbjct: 43  IVSILMPIIYGAVLAYLMLPIYNKTRVYTTEKLKRCIKDGHTADSLAKAAGTLVSLLLLI 102

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASELWTKHLSH 129
            +       +       +  L   +     +       +   +          + +  + 
Sbjct: 103 AIVCGLFWMVIPQIYTSIIGLQESLGENINNLSLWLMKMFEDNPTIEQTIMPFYEQAATE 162

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q+          +  I  +         +  +  + +I M+  L           + + 
Sbjct: 163 FQNWLTTDLVPNMSKIIGELSTGLLSVVTVVKNILIGVIVMVYFLNIKDTLSAQSKKIVY 222

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL +           R    V      G  + ++  G++   A     +P  + + VI  
Sbjct: 223 SLLKLKDANRLVSEVRFAHSVFGGFITGKLLDSLIIGIMCFFAMQFLKMPYVLLVSVIIG 282

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP   P      S +L++  +        ++  +        L P ++G    LP 
Sbjct: 283 VTNVIPFFGPFIGAVPSAFLILLVSPMKCLYFLIFILVLQQFDGNILGPKILGDSTGLPS 342

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               F ++      G +G+ I   L A+I  +    + +    K+
Sbjct: 343 FWVLFSILLFGGLFGFVGMIIAVPLFAVIYRLTATYVSSALRKKD 387


>gi|13476595|ref|NP_108165.1| putative permease [Mesorhizobium loti MAFF303099]
 gi|14027357|dbj|BAB53626.1| putative permease [Mesorhizobium loti MAFF303099]
          Length = 366

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 111/340 (32%), Gaps = 9/340 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  + + LY       P ++ +++ +   P+      +   S     V+  ++ + + ++
Sbjct: 4   VAGLALFLYMFSNILLPFVAGMVLAYFLDPVADRLQ-RLGLSRFMATVVILITFLIVLVL 62

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L      +M +   K+         +                         SL   
Sbjct: 63  AFVILIPVLATQMADFAGKLPEYLTRLQSLITSFDPKWLEQKFGVNANGLRDGLNSLLTS 122

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L T     +       G+  +      +   +  F+   D   +   +DS      
Sbjct: 123 GFGLLTT-----VFTSIWSSGVALVSVVSLFVVTPVVAFYMLLDWDRMVAVIDSWVPRDN 177

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A  + I+R +         G   + +  G +  +   L G+   + +G+   +++ IP 
Sbjct: 178 VATVRAIARDINTATAGFVRGQGTLCLVLGAMYATGLTLTGLNFAILIGLFAGLISFIPY 237

Query: 257 GAPISFTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              ++   +++ +       +      + +   I  FI    L+P LVG  + L  +   
Sbjct: 238 VGSLTGLVLAVGVAFVQFWPDWTMIVAVAVVFFIGQFIEGNILQPRLVGKSVGLHPVWLM 297

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F L       G +GL I     A +AV+ + +I    E+ 
Sbjct: 298 FALFAFGALFGFVGLLIAVPASAAVAVLVRFAIARYLESP 337


>gi|296876016|ref|ZP_06900074.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
 gi|296433007|gb|EFH18796.1| membrane protein [Streptococcus parasanguinis ATCC 15912]
          Length = 375

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 113/340 (33%), Gaps = 6/340 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L A  + + + P+        +    F  +I  V +  +  + +
Sbjct: 30  LISPFVSVLNTILLPFLIAGFLYYITNPVVELLEKHLKIKRVFGILITLVLLFGIIGLGI 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +L    + ++  L++           + R LS  P     +      +        LS 
Sbjct: 90  FYLLPILINQLTSLINSTQGLYWEVQSLVRKLSTNPLFQNIN------IQSTIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++    +I   I L +F  DG  +   L+         
Sbjct: 144 MDILQNLLNSVTNSLGSVVNTIVNTVFILIMTPIFLVYFLVDGKKLLPMLERTILRNDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   +   + + +     G++I A+  G +    Y   G+   +   + + +  +IP   
Sbjct: 204 HISSLLVSLNETVSRYISGISIDALIIGTLAYIGYSFIGLKYALVFAIFSGLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I      ++       ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PTIGLIPMIITYAFTDMDMMIKAVIYMLIIQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++G+ +   + ++   I K  +     ++     
Sbjct: 324 SSNIYGIIGMVVAIPVYSIGKEIVKFLVNLYDNHRAAQEQ 363


>gi|229173568|ref|ZP_04301111.1| hypothetical protein bcere0006_26680 [Bacillus cereus MM3]
 gi|228609950|gb|EEK67229.1| hypothetical protein bcere0006_26680 [Bacillus cereus MM3]
          Length = 348

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPLLVFLENK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKLYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|186472140|ref|YP_001859482.1| hypothetical protein Bphy_3280 [Burkholderia phymatum STM815]
 gi|184194472|gb|ACC72436.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 361

 Score =  135 bits (340), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 165/351 (47%), Gaps = 6/351 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEES 58
           M       +     +   +++++L+ ++ F   +  A +I    WP +         +  
Sbjct: 14  MPNRRKMQRIASAALYAAMVVLALWVIRDFVPAIAWACVIAIALWPAFHRIEEHKFFKGR 73

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           ST +A + T+++  LF++P+         E  +++       ++GIPVP ++  +P G  
Sbjct: 74  STLIATVLTIAIGLLFLLPVGIGIAQAASEAHDVIEWARGVQENGIPVPDFVQHLPFGAA 133

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W +      S  +     +K      +  F   FG       +   FM++ LF  +
Sbjct: 134 QIGSWWQ---DNLSQPLRDSPAMKGLHGGAVVTFGRHFGARAAHALMLFAFMLVTLFVIF 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           + G  +S +L       F      +   +   +R T  G+ ++ IGEG +L  AY L GV
Sbjct: 191 QAGPKLSCELMKGVRRAFGYDGMHLFERMAAAVRGTVSGLVVVGIGEGALLLVAYMLTGV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLWGAIELFIVDKTLR 297
           P    LG +TAI AM+P  AP+ F   ++++   +G +  A  L ++G + +F+ +  +R
Sbjct: 251 PHAALLGFVTAIAAMLPFCAPVVFCGAALWIFVEQGALIPAIGLAVFGFVVVFVAEHFVR 310

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P L+G   +LPFL   FG++GG  T GLLGLF+GP LM ++ V+W E I  
Sbjct: 311 PVLIGSSARLPFLLVLFGILGGAETFGLLGLFVGPALMTVLMVLWTEWIER 361


>gi|167768349|ref|ZP_02440402.1| hypothetical protein CLOSS21_02905 [Clostridium sp. SS2/1]
 gi|167709873|gb|EDS20452.1| hypothetical protein CLOSS21_02905 [Clostridium sp. SS2/1]
 gi|291560321|emb|CBL39121.1| Predicted permease [butyrate-producing bacterium SSC/2]
          Length = 391

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 107/334 (32%), Gaps = 10/334 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVSVMC 72
            +  L     P     +I +   P+ + F                      +I+ + ++ 
Sbjct: 43  LISQLWEILFPFFMGFLIAYILNPVVAFFQRNVSMKLLKKKSANAQRGLAILISYLVMVG 102

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             IV L F+       ++EL   +    +  + +     +    M+  ++     +    
Sbjct: 103 FIIVCLRFIIPQLYDSIRELSLMIPDIYKSIMSIFEHYRENSTDMFPGQIADMIETKTLP 162

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   L TN +  +   +  F     +  ++ I  I      +    +  + + ++ 
Sbjct: 163 KLFELTNNLLTNIVPMLYEASMSFAKGLFNLFIAFIVSIYMTIDKFILKNAGKRLVLAIF 222

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F     +  +    +     +G +I ++  GL+   A  +  +P  V + VI  +  
Sbjct: 223 NENFSYRVLRTLKDCHNIFSGFIIGKSIDSLIIGLLAFVAMTILKLPYTVLISVIIGVTN 282

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIP   PI       ++L   +        +   +        L P ++G    +  L  
Sbjct: 283 MIPYFGPIIGAVPGAFILFIVSPTKCLIFIIMVFVLQQFDGLILGPKILGESTGVRPLLI 342

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            F +  G    G LG+F+G    A +  +    +
Sbjct: 343 LFSITVGGAYFGPLGMFLGVPFFATVQFLIGNWV 376


>gi|262404511|ref|ZP_06081066.1| permease PerM [Vibrio sp. RC586]
 gi|262349543|gb|EEY98681.1| permease PerM [Vibrio sp. RC586]
          Length = 356

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/356 (14%), Positives = 113/356 (31%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    + +YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFIIIYFFGNLIAPLLVAIVLAYLLEWPVAQLS-RLRIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVIIVITMFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQKFITTLPERYPELAHFE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVISNAKNKVLGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMLRMASGILP-RNRKLATKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPEFYTLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +WK       E++  
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLDDESEPT 355


>gi|221640239|ref|YP_002526501.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides KD131]
 gi|221161020|gb|ACM02000.1| Lipocalin-related protein and Bos/Can/Equ allergen [Rhodobacter
           sphaeroides KD131]
          Length = 375

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 107/329 (32%), Gaps = 14/329 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P +    I +   PI      +   S      + +V+++ + ++ +L +    + 
Sbjct: 44  GDVILPFIVGGAIAYFLDPIADRLE-RAGLSRVAATALISVAMLLVVVLLVLSVIPTLVS 102

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  L+       +                          +      +LS          
Sbjct: 103 QLTALIDAAPTIFRQLHSFLLDHF----------PQLSDETSTARQTLLSIGDTIKERGG 152

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +           ++  + ++ + +  F+   D   +  ++DS          + ++R +
Sbjct: 153 EVANTLLTSAYGVINAMIFMVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRHLAREI 212

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V+     G   + +  G     A    G+   + +G I   +  IP    +   A++I
Sbjct: 213 DEVLAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAI 272

Query: 268 YLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            L      G+  +   +    A+  F+    + P LVGG + L  L   F L       G
Sbjct: 273 GLALFQFWGDWLSIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFG 332

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +G+ +   + A I V+ +  I     ++
Sbjct: 333 FVGMLVAVPVAAAIGVLARFGIRQYTSSR 361


>gi|297539685|ref|YP_003675454.1| hypothetical protein M301_2517 [Methylotenera sp. 301]
 gi|297259032|gb|ADI30877.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 352

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 82/344 (23%), Positives = 154/344 (44%), Gaps = 4/344 (1%)

Query: 5   MLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M+N   + R  I+  +++  +Y L+ F A  L A I    +WP+Y     +  +  T+ A
Sbjct: 1   MINTNQVTRIAIITLLVIGCIYVLQPFMAAALFAAIFCLFTWPLYHRLWLRLGKRDTWAA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I T+ ++   I+P+ +L         +L +++    Q   P    + D    +      
Sbjct: 61  MIMTLLLLIALILPMAYLAMNLADSSDQLFNELGTRLQSLQP---KVPDWVRNLPIVGEQ 117

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             H     +        L     + +  FA R   +     L ++ ++   FFFYRDG  
Sbjct: 118 ISHSWERATASQEELMKLLRQYYEPMRTFALRAVQLVAGGFLQLLLVVFVAFFFYRDGTR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I+Q L ++   L     +++  +    ++   LG+   A+ + +V    + LAG P+ + 
Sbjct: 178 IAQGLVTIVRRLGGELGEEMLILSCNTVKGVMLGIFGTALAQSVVAMIGFLLAGAPAPLL 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L   T  +++IP G P+ +   S +L  +G    A  L L+G + +  VD  ++P L+  
Sbjct: 238 LACATFFLSVIPVGPPLIWGGASFWLYSQGEHGWAIFLALYGLLAISTVDNVVKPILISH 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              LP L   FG++GG  T G +G+F+GP L+A+   +    + 
Sbjct: 298 SSHLPLLLIVFGVLGGALTFGFIGIFLGPTLLAVGFTLMLHWMA 341


>gi|288929635|ref|ZP_06423479.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329140|gb|EFC67727.1| membrane protein [Prevotella sp. oral taxon 317 str. F0108]
          Length = 371

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/370 (11%), Positives = 124/370 (33%), Gaps = 17/370 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW++  +I+ +++F+         P   A ++ +  +P+         
Sbjct: 1   MLEEKITLDKLIRWVVCGLIIFAVFFITNSMSEVLLPFFVACLLAYLLYPLVKFTEKYLH 60

Query: 57  ES-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
               T   +   + ++ L     L +    + +  ++                    I  
Sbjct: 61  IRIRTLSILFVLLVLVGLITGVGLLVVPSLIDQFDKISELAARYLGSSKSSGDLSGYIQH 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +   +     L     ++           +  +     +   + +   ++    ++ +F
Sbjct: 121 WLREHQEDIDRL-----IRSKDFNDAVRTAMPKLFSLLGQTASVVVS-IVASCITLLYMF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   ++     +    +  +W ++++   + + +   G  ++++  G++    + +
Sbjct: 175 FILLDYEFLTDNWVRIFPKKYRPFWNELAQDASRELNNYIRGQGLVSLIMGIMFCIGFTI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIEL 289
              P  + +G++  +M ++P     +    +   L       +          L  A+  
Sbjct: 235 IDFPMAIGMGILIGVMNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFGTAILVFAVVQ 294

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I D  + P ++G  + L        L      +G +G+ I   L  LI   W+  +   
Sbjct: 295 IISDMVVTPRVMGKAMGLNPAIILLSLSVWGSLLGFIGVIIALPLTTLIIAYWQRYVTKE 354

Query: 350 KENKEKISSN 359
           K + E  ++ 
Sbjct: 355 KVDVEPETTE 364


>gi|170016980|ref|YP_001727899.1| permease [Leuconostoc citreum KM20]
 gi|169803837|gb|ACA82455.1| Predicted permease [Leuconostoc citreum KM20]
          Length = 385

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 102/329 (31%), Gaps = 5/329 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P+ +               I  + ++ +    L  +      ++  
Sbjct: 55  APILIAGVLYYLLSPLINLMSRYTRMPRRLSIAIILILLLAIIAGILAVVVIVLRDQIIA 114

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            ++      +                   E      ++     I       T+G+  I  
Sbjct: 115 FINNWPDYWRTSQNFINETFKSAQFRPVREFLNNTNTNINQSMIDWSRKYLTSGVAGIGT 174

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           FAS    + +            L++   DG   S  +             ++   + K I
Sbjct: 175 FASTLTSVGVTAVS----TPFILYYMLLDGHKFSAFISEKFPRKAQRSIGQLLTDISKQI 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLL 270
                G   +A    ++ G  Y + G+P  + L ++  I  MIP    I     V    L
Sbjct: 231 AQYIRGQLGVAFAVMVMFGIGYTVIGLPYGILLALMAGIFNMIPYVGSILAQVPVFAVAL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ +
Sbjct: 291 IAGGPKLLILAIIVLAIEQPIEGHVIAPKILGEALSIHPVTVIVVLLSSGHIFGVLGVVL 350

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
                A+I VI        + N E     
Sbjct: 351 AVPAYAVIKVIVTRIYTWWRSNSEFFKEE 379


>gi|152971165|ref|YP_001336274.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238895753|ref|YP_002920489.1| putative transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|150956014|gb|ABR78044.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238548071|dbj|BAH64422.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 369

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 137/337 (40%), Gaps = 3/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A I+     P+ +   ++  E +   A++  
Sbjct: 7   TKGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPVKNKIRTRLGERNGLAALMTI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  +   PL  +      E+  + SK+   +     V   L     G   S L   +L
Sbjct: 67  VIICLIVFTPLAIILSSLAYELNLVYSKLQHNDTQFPTVVASLFAHLPGWARSFLADHNL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q ++          G  ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 127 DSAQQIQQQLSDAALK-GGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 186 ILESLP-LSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWIAGLDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +IYL   G ++    +  +  I + +VD  LRP LVG   +
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|322374413|ref|ZP_08048927.1| membrane protein [Streptococcus sp. C300]
 gi|321279913|gb|EFX56952.1| membrane protein [Streptococcus sp. C300]
          Length = 388

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKH-KINRILAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQVIVAVI----IVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|257063512|ref|YP_003143184.1| predicted permease [Slackia heliotrinireducens DSM 20476]
 gi|256791165|gb|ACV21835.1| predicted permease [Slackia heliotrinireducens DSM 20476]
          Length = 492

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 109/355 (30%), Gaps = 16/355 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +I+  I   L  L    + V+ A +  F      + F SK      +   I+ V 
Sbjct: 26  IIGIVVIVAGIGYVLRILSTPLSIVMWATLFVFILRSPVAFFESK-GIPRVWGTAISYVV 84

Query: 70  VMCLFIVPLLFLFYY---GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  +  V +  +F        + +  ++ +     +         D    M+      + 
Sbjct: 85  MFAVLSVLVAIMFSPTDGIGEQAENFIASIPGWATNVADWINANYDQYAHMFDETTVREW 144

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L    S        L +     I  F S      +     +I     L      G     
Sbjct: 145 LDSFLSSMSAWANELASASATSILDFTSGLANSLMIIIFGLIVAFWILMELPAMGREF-- 202

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +    F    + +   V + +        ++ +  G+  G  + +A VP+   L +
Sbjct: 203 --RRMVPDRFSDDVEMLYLTVTQAMGGYVRATLVVCLSIGVACGLVFGIASVPNAAVLAL 260

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I A++ +IP         +   + +      A  +F+   I   IV   ++P L+   + 
Sbjct: 261 IAAVLNVIPVVGHWIGLFLVTGIALFSGPITAVIVFVSTLIIQEIVYMLIQPKLMSNSVD 320

Query: 307 LPFLPTFFGLVGG--------VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +        +  G             ++G+ I   + A++  ++        + +
Sbjct: 321 VHPALVIVAMFIGSSAGTALAGIVGSIVGMLISIPVAAILKSLFVYYYERGTDRQ 375


>gi|331266486|ref|YP_004326116.1| conserved hypothetical protein, permease,putative [Streptococcus
           oralis Uo5]
 gi|326683158|emb|CBZ00776.1| conserved hypothetical protein, permease,putative [Streptococcus
           oralis Uo5]
          Length = 388

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFIFLPVLDFLGVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVLAISIVFVIIGLFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + LS+  S   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPTYLEDADKVINDLVTKRLPDDFRPQLEQVLSNVSSEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSAFISSVSQVIVAVI----IVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LG+   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGITAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIIEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|52142606|ref|YP_084224.1| permease [Bacillus cereus E33L]
 gi|222096407|ref|YP_002530464.1| hypothetical protein BCQ_2747 [Bacillus cereus Q1]
 gi|229139548|ref|ZP_04268119.1| hypothetical protein bcere0013_26580 [Bacillus cereus BDRD-ST26]
 gi|229197094|ref|ZP_04323831.1| hypothetical protein bcere0001_26450 [Bacillus cereus m1293]
 gi|51976075|gb|AAU17625.1| conserved hypothetical protein; possible permease [Bacillus cereus
           E33L]
 gi|221240465|gb|ACM13175.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|228586404|gb|EEK44485.1| hypothetical protein bcere0001_26450 [Bacillus cereus m1293]
 gi|228644095|gb|EEL00356.1| hypothetical protein bcere0013_26580 [Bacillus cereus BDRD-ST26]
          Length = 348

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKLYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|49474324|ref|YP_032366.1| permease protein [Bartonella quintana str. Toulouse]
 gi|49239828|emb|CAF26221.1| Permease protein [Bartonella quintana str. Toulouse]
          Length = 403

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 106/327 (32%), Gaps = 11/327 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   ++ +        P ++ +++ +   PI      K      F  ++ T
Sbjct: 47  KQIFFWVGTLVFFILFMLVFGSILLPFVAGIVLAYFLNPIVQLLE-KFGICRVFGTILIT 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + ++ +F+  L+ L      ++++ VS  + +                   +      + 
Sbjct: 106 LFIIFVFVAALIILIPITSWQIQQFVSNGLPVYINRIQTFFVEHDFDWVRRYFGSDPNEL 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S+ + L   S     ++ I  +     + G   ++     +   +  F+   D   +  
Sbjct: 166 HSNIKGLLGQS-----SDFITSLLNSLLKSGKSIVNIVSLFVVAPVVAFYMLLDWPRMVT 220

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DSL         + I   + + I     G   + +  G        + G+   + +G+
Sbjct: 221 AVDSLIPRDHLETVRSIFHEMDRAIAGFVRGQGTVCLILGGYYSIGLTITGLNFGLLIGM 280

Query: 247 ITAIMAMIPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ +P    +S       V+       N      + +   I  FI    L+P LVG
Sbjct: 281 FIGLISFVPYIGTMSGFVLSVGVAWVQFYPNNWGWIIVVIVIFLIGQFIEGYILQPKLVG 340

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             + L  +   F L       G  G+ 
Sbjct: 341 SSVGLHPVWLMFALFAFSSLFGFTGML 367


>gi|187779547|ref|ZP_02996020.1| hypothetical protein CLOSPO_03143 [Clostridium sporogenes ATCC
           15579]
 gi|187773172|gb|EDU36974.1| hypothetical protein CLOSPO_03143 [Clostridium sporogenes ATCC
           15579]
          Length = 369

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 112/328 (34%), Gaps = 1/328 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I   +        P + A  I +   P+   F +K +    F  +I  + V+ L I+ + 
Sbjct: 37  IYSFMKSFLSILVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFIN 96

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  + +L +         I                   ++  ++  SL     +
Sbjct: 97  TFVPKIIKNIGDLFAHSPDYINQTIQWFNDNIKYSKVYDMLMENSQISNNIPSLLNKI-S 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    I+       +F    + +   +I  I  L        ++ + + +L      + 
Sbjct: 156 NLTNTFINTFLNTTIKFTSFLVKFVFGLIISIYLLLDKESLIENLKKFILALSGEKNYSK 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                + V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P
Sbjct: 216 ILSFFKEVDMVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGP 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +  + +  N   A  + ++  I        L P ++G  + L  +   F +  G
Sbjct: 276 FIGMIPAFIITLFFNYIKAIWVLIFIVILQQFDGWYLGPKILGNQVGLSPIWIIFAITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIM 347
             T G++G+F+   + A+I +   + I 
Sbjct: 336 GGTFGVMGMFLSVPIAAIIKIYLDKYIE 363


>gi|168492574|ref|ZP_02716717.1| transport protein [Streptococcus pneumoniae CDC0288-04]
 gi|183573280|gb|EDT93808.1| transport protein [Streptococcus pneumoniae CDC0288-04]
          Length = 388

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 110/335 (32%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V      I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KVNRVIAITIVFVITALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    +   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VLASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRNYLTQFIPRK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V         K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVAISAIFEWYK 371


>gi|86357127|ref|YP_469019.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86281229|gb|ABC90292.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 374

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 101/325 (31%), Gaps = 9/325 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     V 
Sbjct: 10  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATVG 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + +F + L+ L    + +  +   ++                     W       
Sbjct: 69  ILIAFVIVFALALMILIPVLISQFNDFAERLPSYISQLQKFIAQSQHSLLPQWIRSQVGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 IKDNFSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++D      +    ++I+  + + I     G   + +  G+   +   L G+   + +G
Sbjct: 184 AKVDQWIPRDYVNDVRQIASEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIG 243

Query: 246 VITAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++    +    +      + +      F+    L+P LVG
Sbjct: 244 LFAGMISFIPYVGSLVGLVLAVGVAIVQFWPDYPWIGLVLVVFFSGQFLEGNILQPKLVG 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLG 327
             + L  +   F L       G +G
Sbjct: 304 SSVGLHPVWLMFALFAFGALFGFVG 328


>gi|182440690|ref|YP_001828409.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326781364|ref|ZP_08240629.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|178469206|dbj|BAG23726.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326661697|gb|EGE46543.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 377

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 108/331 (32%), Gaps = 14/331 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     P++  L +   +WP+      +     +  A + TV  + +    +  +     
Sbjct: 41  MWSVVWPLIVGLFLTTLTWPLARFL-RRLGWWPSLAASVVTVFSLLVGAGIVALIAVPVA 99

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E  EL   V+                    WA+           +  + + T    + +
Sbjct: 100 GESGELADGVIAGIDKVRE------------WAAGPPLNIGDDQITGALDTATAQLQDSV 147

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +   A       ++  ++ +  +  +FFF +DG      L             +++  
Sbjct: 148 GSVVTTAVTGVSTVVNGLVTAVLAVFLMFFFLKDGPRFLPWLTRQLPGRLATDVPEVASR 207

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAV 265
             + + +       + + + + +G   W+ GVP  + L V+T + A +P    +      
Sbjct: 208 CWETLGAFVRSQAFVGLLDAVFIGLGLWILGVPLVLPLAVLTFVCAFVPIVGALFAGFVA 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +  L+     +A  +     +   +     +P +    + L        +  G    G+
Sbjct: 268 VVIALVSNGPMDALLVLAIIVVVQQLEGNVFQPMIQSRGLGLHAATVLLAVTLGGSLAGV 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +G  +   + A++ VIW      + E+  + 
Sbjct: 328 VGSLLAVPVAAVLGVIWNYLREQLVEDAPEQ 358


>gi|317497713|ref|ZP_07956028.1| hypothetical protein HMPREF0996_01009 [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895047|gb|EFV17214.1| hypothetical protein HMPREF0996_01009 [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 391

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 107/334 (32%), Gaps = 10/334 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVSVMC 72
            +  L     P     +I +   P+ + F                      +I+ + ++ 
Sbjct: 43  LISQLWEILFPFFMGFLIAYILNPVVAFFQRNVSIKLLKKKSASTQRGLAILISYLVMVG 102

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             IV L F+       ++EL   +    +  + +     +    M+  ++     +    
Sbjct: 103 FIIVCLRFIIPQLYDSIRELSLMIPDIYKSIMSIFEHYRENSTDMFPGQIADMIETKTLP 162

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   L TN +  +   +  F     +  ++ I  I      +    +  + + ++ 
Sbjct: 163 KLFELTNNLLTNIVPMLYEASMSFAKGLFNLFIAFIVSIYMTIDKFILKNAGKRLVLAIF 222

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F     +  +    +     +G +I ++  GL+   A  +  +P  V + VI  +  
Sbjct: 223 NENFSYRVLRTLKDCHNIFSGFIIGKSIDSLIIGLLAFVAMTILKLPYTVLISVIIGVTN 282

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIP   PI       ++L   +        +   +        L P ++G    +  L  
Sbjct: 283 MIPYFGPIIGAVPGAFILFIVSPTKCLIFIIMVFVLQQFDGLILGPKILGESTGVRPLLI 342

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            F +  G    G LG+F+G    A +  +    +
Sbjct: 343 LFSITVGGAYFGPLGMFLGVPFFATVQFLIGNWV 376


>gi|296119053|ref|ZP_06837625.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
 gi|295967888|gb|EFG81141.1| putative membrane protein [Corynebacterium ammoniagenes DSM 20306]
          Length = 416

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 106/336 (31%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    + +    LYF+     PV+ A+++     P+ S   S  +      ++   +
Sbjct: 48  RFIVIVAALAVAGFLLYFVWVGLLPVILAILLSSVLAPVTSKLRSW-KFPPALASISTLL 106

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + +     +      +  +L ++        + +              +L     +
Sbjct: 107 GLLLIIVGVFTAMGPVVSRQGSQLWTQAEEGIDKLLAMSE------------DLPFNIDA 154

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   T      +  I               +++  M I  FF  +DG      +
Sbjct: 155 EQIDKLVQDATSFLQGQMSSIASGVISGASAASSVLVTVAVMFIISFFILKDGDRFLPWV 214

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     +  ++   V K +         +A  +   +G   W  GVP    L VIT
Sbjct: 215 RKYSGSTIGWHVTELFTRVWKTLAGFIQAQAAVAFVDAFFIGLGLWALGVPLAFVLAVIT 274

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP    ++      +  L+   + NA  +     I   +    L+P L    + L
Sbjct: 275 FFAGFIPIIGAVTAGVLAVVIALVSNGLVNALLVLALILIVQQVEGNVLQPVLQSKAMGL 334

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                   +  G    G++G F+   + A IA + +
Sbjct: 335 HAAIVLLSVTVGSALAGIIGAFLAVPVAATIATVLR 370


>gi|254485468|ref|ZP_05098673.1| membrane protein [Roseobacter sp. GAI101]
 gi|214042337|gb|EEB82975.1| membrane protein [Roseobacter sp. GAI101]
          Length = 358

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 112/341 (32%), Gaps = 14/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   + LV L+F      P L    I +   P+     S    S     ++ T+  + +F
Sbjct: 14  VAAAVFLVILWFTGNVLLPFLIGAAIAYFLDPVADRLES-LGLSRAMATMVITLIAILIF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +    + +   L +       + +   R                       +  
Sbjct: 73  VLMALLVIPALVTQSVSLFNVAPKLADNFMAFLRDHF----------PTLFVEGSTLNTS 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +           + + A       L+  L  + + +   +   D   +  ++DSL   
Sbjct: 123 LTNIAATVQERGGELLQTALASAASLLNIMLLFVIVPVVAVYLLLDWDRMVAEIDSLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++R + + +     GM  + +  G     A  L G+   + +G I  ++  I
Sbjct: 183 EHAPVIRRLAREIDRTLAGFVRGMGTVCLILGTYYAIALMLVGLQFGLVVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +    ++I L      G+  +   +     +   +    L P LVG  + L  + 
Sbjct: 243 PYLGALLGGILAIGLALFQFWGDWLSIGLVAGVFFLGQTLEGNFLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               L       G +G+     + A + VI + +    +E+
Sbjct: 303 LILALSVFGSLFGFVGMLAAVPIAATLGVIARFAAEQYRES 343


>gi|149011739|ref|ZP_01832935.1| hypothetical protein CGSSp19BS75_07222 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182684459|ref|YP_001836206.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|303254157|ref|ZP_07340270.1| membrane protein [Streptococcus pneumoniae BS455]
 gi|303260727|ref|ZP_07346687.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|303263054|ref|ZP_07348986.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|303264458|ref|ZP_07350378.1| membrane protein [Streptococcus pneumoniae BS397]
 gi|303267436|ref|ZP_07353290.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|303269789|ref|ZP_07355538.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|147764170|gb|EDK71102.1| hypothetical protein CGSSp19BS75_07222 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182629793|gb|ACB90741.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|302598883|gb|EFL65916.1| membrane protein [Streptococcus pneumoniae BS455]
 gi|302635817|gb|EFL66320.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638130|gb|EFL68605.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|302640682|gb|EFL71080.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|302643027|gb|EFL73320.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|302646270|gb|EFL76497.1| membrane protein [Streptococcus pneumoniae BS397]
          Length = 388

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L F+     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFIAVVMLPVILSGLLYYLLNPIVDWMEKH-KVNRVIAITIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    +   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VLASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRNYLTQFIPRK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|187920077|ref|YP_001889108.1| hypothetical protein Bphyt_5379 [Burkholderia phytofirmans PsJN]
 gi|187718515|gb|ACD19738.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 650

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 98/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +   +++  LYF +    P+  ++++ F   P+      +          IA + 
Sbjct: 24  GLASVITGVVVVCGLYFGRAVLIPITLSVLLSFLLAPLVQML-RRFHMGQLPSIFIAVLF 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +     +    +    +L        Q    V          + +          
Sbjct: 83  ALASLLAVGALITAQLVQLAADLPQYQEAIEQKIETVQEKTVGRADSLMSRAAVALQRVS 142

Query: 130 PQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMIIALFF 176
           P        T         +              + A R     +    +   +++   F
Sbjct: 143 PPKPNPPRPTGRAARNAPAVPQPVEVHEPAPTPMQLAQRALSPAIAPIETTFIVLVVTIF 202

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G V+     + 
Sbjct: 203 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSRYFVAQLGVNLSAGGVIAIGLAII 262

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++++L   I+     A    +   +   +  +
Sbjct: 263 GVPGALLFGVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVYTLILFIVVDVVAGQ 322

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 323 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCVVTLGR 371


>gi|325568894|ref|ZP_08145187.1| protein of hypothetical function UPF0118 [Enterococcus
           casseliflavus ATCC 12755]
 gi|325157932|gb|EGC70088.1| protein of hypothetical function UPF0118 [Enterococcus
           casseliflavus ATCC 12755]
          Length = 447

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 106/337 (31%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     SK +   +       + ++ L +
Sbjct: 83  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLESK-KIPRSVSIAGIYLLILLLIV 141

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L+     +  +L++ +               +           T  L +  S  +
Sbjct: 142 FAGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIM 201

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G   +    S    +F+      I       F  R+       + SL    
Sbjct: 202 SFIGDYWQTGAAGLSSLFSTISTLFIALFTGPIIAF----FLLRNPNKFYFSVLSLVPPR 257

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 258 FRKDFNEIVKISDIQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 317

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       +++  + +        +       +    + P ++G  +K+  +     
Sbjct: 318 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVVPRVMGDRLKIHPITILVV 377

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ V+        K+ 
Sbjct: 378 LLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQR 414


>gi|319784360|ref|YP_004143836.1| hypothetical protein Mesci_4677 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317170248|gb|ADV13786.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 400

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 111/349 (31%), Gaps = 9/349 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q         ++ + LY       P ++ +++ +   P+      +   S     V+  
Sbjct: 31  RQIFFWLAGAALLALFLYVFSAILLPFVAGMVLAYFLDPVADRLQ-RLGLSRFMATVVIL 89

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + + ++  + L      +M +   K+         +                     
Sbjct: 90  ITFLIVLVLAFVILIPVLATQMADFAGKLPEYLTRLQSLITSFDPKWLEQKFGVNANSLR 149

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               SL      F+ T     +       GM  +      +   +  F+   D   +   
Sbjct: 150 DGLNSLLTSGFGFVTT-----VFTSLWSSGMALVSVVSLFVVTPVVAFYMLLDWDRMVAV 204

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D           + I+R +         G   + +  G +  +   L G+   + +G+ 
Sbjct: 205 IDGWVPRDNVQTVRAIARDINTATAGFVRGQGTLCLVLGAMYATGLTLTGLNFGILIGLF 264

Query: 248 TAIMAMIPGGAPISFTAVSIYLLI---KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP    ++   +++ +       +      + +   I  FI    L+P LVG  
Sbjct: 265 AGLISFIPYVGSLTGLVLAVGVAFVQFWPDWTMIVAVAVVFFIGQFIEGNILQPRLVGKS 324

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + L  +   F L       G +GL I     A +AV+ + +I    E+ 
Sbjct: 325 VGLHPVWLMFSLFAFGALFGFVGLLIAVPASAAVAVLVRFAIARYLESP 373


>gi|237747231|ref|ZP_04577711.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378582|gb|EEO28673.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 365

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 138/332 (41%), Gaps = 2/332 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +    +  + +   + L  F+  V    I+     P+   F++K        A++     
Sbjct: 10  VFILFLSVVTVAFFWILLPFYGAVFWGFILAVMFMPLNDRFLAKIPGRKNLAALLTLSVC 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + I+PL+ +      E   L  K++  +       +++           L    ++  
Sbjct: 70  LLIVIIPLIVVIIALTQESAALYQKILTRSISFDASFQFIVSKLPDWAIDLLNHSGITTL 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
              +    + L      +I       G   LD+ +S   M+  LFF  RDG  ++ ++  
Sbjct: 130 AEFQQKISSGLLQ-ASQYIAGKLFVIGQNILDFAISFGLMLYLLFFLLRDGNELAARIRK 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   L       +      VIR+T  G  ++AI +G + G  +W  G+ + +  G I ++
Sbjct: 189 LIP-LANEQKTLLLNKFTGVIRATVKGNLVVAIVQGALGGLIFWFLGIEAALLWGAIMSV 247

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++++P G+ + +  V+IY L  G +     L  +G + + ++D  LRP LVG   ++P  
Sbjct: 248 LSLLPAGSGVIWVPVAIYFLATGAVLKGVILLAFGVLVIGLIDNFLRPLLVGKDTQMPDY 307

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                 +GG+   GL G  IGPV+ AL    W
Sbjct: 308 LVLVSTIGGMALFGLNGFVIGPVIAALFITAW 339


>gi|237731362|ref|ZP_04561843.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906901|gb|EEH92819.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 369

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 142/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G   +++  +       L  +F+ +L A I+     P+ +   S   E +   ++I  
Sbjct: 7   TKGFFIFILALVTWAFFDVLSPYFSAILWAAILTTIFNPVKNRLRSALGERNGLASLITI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  +  +PL+ +     +E+  + +K+   +     V   +       WA     +H 
Sbjct: 67  VIICLIVFIPLMVILSSLAIELNVVYTKLQQNDTQFPEVVTSILSFLP-DWARGFLAEHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +Q
Sbjct: 126 LDDIAQIQKKLSDVVLQGGQYLAGSAFLIGKGTFGFAISFGIMLYLLFFLLKDGPYLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++A+ +G++ G A+ +  +   V  G +
Sbjct: 186 ILDSLP-LSDFAKQHLFAKFVGVTRATVKGTAVVALVQGILGGIAFAIVDIDGSVLWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     I +   +I+L     ++    +  +  I + +VD  LRP LVG   K
Sbjct: 245 MAFLSLVPAVGSAIVWVPAAIFLFATHQLWQGLFIVGFFVIIVGLVDNILRPLLVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK-EKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        E   E I   F
Sbjct: 305 MPDYLILITTLGGMEIYGINGFVIGPLIAALFITCWNLFSGRDHEGNVEGIDEAF 359


>gi|325697596|gb|EGD39481.1| permease [Streptococcus sanguinis SK160]
          Length = 366

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 115/343 (33%), Gaps = 7/343 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRIPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + G    GL+G+     + A+I  + +E ++  +E K + S++
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKAEGSAS 365


>gi|241203977|ref|YP_002975073.1| hypothetical protein Rleg_1242 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857867|gb|ACS55534.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 374

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 103/326 (31%), Gaps = 9/326 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L  Q       +   +  LY       P ++ + I +   P+      +   S     +
Sbjct: 9   ILKRQIFFWLAALVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATI 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              V+ + +F + L+ L    + +  +   ++               +     W      
Sbjct: 68  GILVAFVIVFALALMILIPVLISQFNDFAQRLPGYISQLQQFITQAQNSLLPDWVENQMG 127

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +   +      FL       +       G   +D    ++   +  F+   D   +
Sbjct: 128 AIKDNLSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRM 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++D      + +  ++I++ + + I     G   + +  G+       L G+   + +
Sbjct: 183 VAKVDQWIPRDYVSDVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAVGLSLVGLNFGLLI 242

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G+   +++ IP    +    ++I +       +      + +      F+    L+P LV
Sbjct: 243 GLFAGMISFIPYVGSMVGLVLAIGVALVQFWPDYPWIGLVLVVFFSGQFLEGNILQPKLV 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLG 327
           G  + L  +   F L       G +G
Sbjct: 303 GSSVGLHPVWLMFALFAFGALFGFVG 328


>gi|65320191|ref|ZP_00393150.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
          Length = 357

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 21  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 80  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHRLFEWLSTQNY----VSIETIE 135

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + +   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 136 KNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 195

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y++  +P    LG+I A   +IP
Sbjct: 196 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYFIIDLPYAFVLGIIAAFTNIIP 255

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 256 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 316 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 353


>gi|326386812|ref|ZP_08208432.1| hypothetical protein Y88_2706 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208731|gb|EGD59528.1| hypothetical protein Y88_2706 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 386

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 142/355 (40%), Gaps = 6/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P+     ++    +  L+ +  F   +L A+I+     P+ ++ +          A+I
Sbjct: 32  IPPRAFQIGLVAAATVGFLWLIAPFSGAILWAVIVTILFSPLNAALLRGLPGRRNTAALI 91

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH----GIPVPRWLSDIPGGMWASE 121
           A + ++ + +VP + L    + E+ EL+S   +A          V  +L +      +  
Sbjct: 92  ALLVIVAVLVVPAILLGKALVEELGELLSHAGMAGFDPGRAIATVQSFLPEWAHRWLSDL 151

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                            T     G+  I       G   L   L++  M+   FF  RDG
Sbjct: 152 GLGDLGLADPETLRQRITRGLAGGLQAIAPQILNVGQGALGLFLTLGVMLYLTFFLLRDG 211

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+++++           +++      V+R+T  G   IA+ +G + G  +W+ G+P  
Sbjct: 212 RGIAERIERALPLPALQR-RRLLSEFVSVVRATVKGSMTIAVVQGGIGGFTFWMLGLPGA 270

Query: 242 VALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G+   + ++ P       +   SIYLL  G ++    LFL G   +  +D  +RP L
Sbjct: 271 LLWGLAMGVFSLFPAVGTGFIWVPASIYLLATGAVWKGVILFLCGFFVISTIDNVIRPIL 330

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           VG   ++P        +GG    G  G  +GPV+ AL   +W      +++  E 
Sbjct: 331 VGRDTQMPDYIVLISTLGGFNLFGFNGFVLGPVIAALFLSVWDIFGRGVQDEAEN 385


>gi|319939440|ref|ZP_08013800.1| membrane protein [Streptococcus anginosus 1_2_62CV]
 gi|319811426|gb|EFW07721.1| membrane protein [Streptococcus anginosus 1_2_62CV]
          Length = 392

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 112/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +  L F+     PV+ A ++ +   PI        + +      I  + +  L I
Sbjct: 42  ISFIFIPVLEFIGVIMLPVILAGLLYYLLNPIVDFMEKH-KINRLVAITIVFILIALLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      +    Q    + +   +            + +++      
Sbjct: 101 WGLAVAIPSLQHQIVSFAKNLPANLQKSNKIIQDFLENRISDDVKPQLEEIVNNFSVQVT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  ++++    S    + +        M   LF+  RDG ++   L       
Sbjct: 161 TWASNFSSKAVNWVSTLISTASQVIVAII----IMPFILFYLLRDGKNLKSYLTKFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F     +I   V   + +   G   +AI   ++    + + G+   V LGV   I+ +IP
Sbjct: 217 FREPVGQILTDVNTQLANYVRGQVTVAIIVAIMFIIFFKVIGLRYAVTLGVTAGILNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPIMLLKVIVVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTAGSMFGIWGVLLGIPVYASAKVVIAAIFKWYKK 372


>gi|255262669|ref|ZP_05342011.1| membrane protein [Thalassiobium sp. R2A62]
 gi|255105004|gb|EET47678.1| membrane protein [Thalassiobium sp. R2A62]
          Length = 353

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 119/349 (34%), Gaps = 14/349 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q     +   ++ V +++L     P +    I +   PI     +    +      + T
Sbjct: 7   EQATYWGIAAAVLFVLMWYLGNVILPFVLGGAIAYCLDPIADRLEA-LGLNRIMATSVIT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +FIV  + +    + +   L+                                  
Sbjct: 66  LFGALVFIVLFIAVIPTLIQQASGLIQAAPGWFTDFQAFLTQ----------RFPSLIDE 115

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +     ++   +    +    +           L+  + I+ + +  F+   D  +++ +
Sbjct: 116 NSAVRDQLGRVSEAIQSHGGELIEGLLSSFSGLLNIAVLIVIVPVVAFYLLLDWDNMTAR 175

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D L         +KI R + K + S   G   + +  G+    +  + G+   + +G I
Sbjct: 176 VDDLLPRDHAPTIRKICRDIDKTLASFIRGQGTVVLILGVYYAISLMIVGLNFGLVVGSI 235

Query: 248 TAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +++ IP    +   A++I        G+ F+   + +  A+  F+    L P LVG  
Sbjct: 236 AGLISFIPYVGALVGGALAIGIAIFQFWGDWFSLGAVVVIFAVGQFLEGNILTPKLVGNS 295

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + L  +   F L       G +G+ +   L A + VI +  I   K ++
Sbjct: 296 VGLHPVWLIFALSVFGALFGFVGMLVAVPLAASLGVIARFLIAQYKTSR 344


>gi|238917949|ref|YP_002931466.1| putative permease [Eubacterium eligens ATCC 27750]
 gi|238873309|gb|ACR73019.1| putative permease [Eubacterium eligens ATCC 27750]
          Length = 432

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 113/339 (33%), Gaps = 11/339 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVSVMCLFIV 76
           +    +P L   +I    +P   +  ++                   ++A +  +  F +
Sbjct: 82  IFHILSPFLIGAMIALVLYPFIKTLYNRFFMGVCHIKSRKAAKMLSILVAYLIAVGAFAI 141

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS-ELWTKHLSHPQSLKI 135
            + F+       + E+ ++  +  ++         D             + +       +
Sbjct: 142 LIGFVVPQIYKSITEIANQAPVWYENIRNWFTEFEDKHANSSIDYNFINQKIEDALPKLV 201

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   TN + +I   +       L+  ++II  I  +       +   + L ++    
Sbjct: 202 DYMTDALTNMVPYILNTSMAILSGVLNLVIAIIVSIYMISDNKNIFYHFKRFLYAVLPKK 261

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + I +    +  +  +G +  +I   ++      +  +P  V + VI  I  MIP
Sbjct: 262 TADNTRIICKNCASIFINYIIGKSFDSIIVMIICFIIMLILKLPYAVLISVIVGITNMIP 321

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P     +   +++  +        +       +    + P ++G    L  +   F 
Sbjct: 322 YFGPYIGGVIGGVIIVIASPIKLIIFVIMIVCIQQVDGLLIGPRIIGSTTGLKPVWVVFS 381

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  G    G++G+F+G  + A+++ +   ++    + ++
Sbjct: 382 ITVGGALFGVIGMFLGVPVFAVLSYLLNITVQHFLDKRK 420


>gi|229012172|ref|ZP_04169351.1| hypothetical protein bmyco0001_26180 [Bacillus mycoides DSM 2048]
 gi|228749260|gb|EEL99106.1| hypothetical protein bmyco0001_26180 [Bacillus mycoides DSM 2048]
          Length = 348

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 123/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPLLVFLENK-KVPRGLAILLLYLFIITLTG 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S      +   +   I
Sbjct: 71  VAIGVVVPTISQQLMDLVKNMPTYIKEGKVYIQDLSHHRLFEWLSTQNYVSIETIEKNAI 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +       +   A+    I  +  L I  +   LF+ ++DG +   +  S+    
Sbjct: 131 EYLKEIPNT----LTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSVLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  + K  
Sbjct: 307 ILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKTKRSKRK 348


>gi|301054426|ref|YP_003792637.1| permease [Bacillus anthracis CI]
 gi|300376595|gb|ADK05499.1| conserved hypothetical permease [Bacillus cereus biovar anthracis
           str. CI]
          Length = 361

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 118/338 (34%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 25  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W                 
Sbjct: 84  VGVGVVVPTISQQLMDLVKNMPGYIKEGKLYIQDLSHHRLFEWLFTQNY----VSIETIE 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L I  +   LF+ ++DG +   +  SL    
Sbjct: 140 KNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSLLPES 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 200 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 260 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 320 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 357


>gi|329935266|ref|ZP_08285232.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329305089|gb|EGG48948.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 521

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 93/309 (30%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      ++AL+I     P  +    +          +  V
Sbjct: 172 RLLVLAGTVWVLMRVISAVRLVVLAFVAALLITAILQPTVARL-RRHGVPRGLATALTAV 230

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  +  L  ++                     W          
Sbjct: 231 LGFVVMGLIGWFVTWQVMENIDNLSDQIQDGIDDLRR------------WLLNSPFHVTD 278

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         D I         + ++    I+  + +  F   DG  I +  
Sbjct: 279 KQINAIAKNLREAIGANTDQITSAGLEGVTVIVEGLTGILLTVFSTLFLLYDGRRIWEWS 338

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 339 LKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLEVPMAVPLAVFI 398

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +F A    +       I    L+PF++G  +++
Sbjct: 399 FLFAFIPLVGAVVSGALAVVVALVTQGVFAAVMTLVVVLAVQQIEGHILQPFILGRAVRV 458

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 459 HPLAVVLSV 467


>gi|225868326|ref|YP_002744274.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701602|emb|CAW98855.1| putative membrane protein [Streptococcus equi subsp. zooepidemicus]
          Length = 393

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ + + P+      K   + T    I    V+ LF 
Sbjct: 43  ISFLFTPILSFLTIIMLPLVISTILYYLTKPLVDMVE-KLGPNRTASIFIVFGLVILLFF 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         +++  V  +             L +    +         L+      +
Sbjct: 102 WAISGFIPMIQDQLRSFVEDLPKYVAKVNLEANKLLENEWLVSYRSNLQDMLTSMSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +   +S   +     +F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAIIMSPFILF----YFLRDSGHMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + + +     G   +AI  GL+    + L G+   +  G+I   + MIP
Sbjct: 218 LRQPMARVLGEINQQLSGYVQGQVTVAIVVGLMFSVMFSLVGLNYSITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMGMVQGPLMLIKVLIIFVIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPVYASVKVVVKELFDWYKD 373


>gi|307706792|ref|ZP_07643597.1| conserved hypothetical protein [Streptococcus mitis SK321]
 gi|307617877|gb|EFN97039.1| conserved hypothetical protein [Streptococcus mitis SK321]
          Length = 388

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVIAISIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLSFARNVPVYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRHYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFMIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|255650757|ref|ZP_05397659.1| hypothetical protein CdifQCD_11271 [Clostridium difficile
           QCD-37x79]
          Length = 327

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 109/326 (33%), Gaps = 2/326 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P + A ++ +   P+     SK      +  ++    ++ + I  +LF     +  
Sbjct: 2   SLLTPFIIAFVLAYIFNPLVKFLESKLNFKRIYSLLLTYGVLIVILISFILFTVPSIVNS 61

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + +LV+++             L      +  + L  K         +   + L    +  
Sbjct: 62  LADLVAQIPTYIDKTEQFLFDLGKSLQSVDPNTL--KEYGDKIMSVMPKFSNLLIGSLGG 119

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I       G   + + L  I     L    +      + +       +  +  ++ + + 
Sbjct: 120 IFSTTFSVGKFIVQFLLGFIICFYILLEKEKFLLFTKKVVYISLGKKYGDFIIELCQSLN 179

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             I   F G  + +   G++ G   +       +  G +  +M M+P   P+   A  + 
Sbjct: 180 LNIGKYFTGKILDSFIVGVLSGIGLYFLKSEYALLFGTLMGVMNMVPYFGPVIGMAPVVI 239

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +  N   A    ++  I   +    + P +VGG + L    T   +  G    G+ G+
Sbjct: 240 INLFSNPTIALTSLIYLIIIQQVEVTFIEPKIVGGQLGLSPFFTILAVTVGGGFFGIPGM 299

Query: 329 FIGPVLMALIAVIWKESIMAIKENKE 354
            +   +M +I + + E +    +  +
Sbjct: 300 ILSAPVMGVIKIYFCEFVNRRHDKIQ 325


>gi|152964487|ref|YP_001360271.1| hypothetical protein Krad_0518 [Kineococcus radiotolerans SRS30216]
 gi|151359004|gb|ABS02007.1| protein of unknown function UPF0118 [Kineococcus radiotolerans
           SRS30216]
          Length = 397

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/347 (9%), Positives = 103/347 (29%), Gaps = 14/347 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLAVIAT 67
            I   +   ++L  +         ++ A       +P+      +    +  +   ++  
Sbjct: 34  AIGLLLATALVLYIVLQTLQVLTWIVVAAFFAIALYPVVGWVERRLLGGKRRSLATLLVF 93

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ +              E  +   ++             + ++     A      + 
Sbjct: 94  VVIVLVLAGIGTLFVVPLAQEGTKFAGQLPQLIDDARAGRGPVGNLLERTGALTYVQDNQ 153

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +    +   A+               + +  F    +G  +   
Sbjct: 154 DR------------IRSFATGLTTPAAGVLSGVATSAAGAASIFVLAFLMVLEGPKVVDG 201

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L         + +     K +     G  +I+   G++  +   +AGVP    + + 
Sbjct: 202 FVNLFHAPTAHRLRSVGADCAKSVTGYLSGNLLISAICGVLTYAVLKIAGVPFAGLIALF 261

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            AI  +IP         V++   +  ++     + ++  +   + +  L+P +    +KL
Sbjct: 262 VAIADLIPLVGATIGAVVAVVAGLVHSVPAGIAVLVFFLVYQQLENHLLQPLIFSRTVKL 321

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             L     ++  V   G+LG  +   + ++  V+ ++     +   +
Sbjct: 322 NPLTVIVAILLSVELAGILGALLAIPVASIAQVVVRDVWDHRRGRPK 368


>gi|168700128|ref|ZP_02732405.1| hypothetical protein GobsU_11410 [Gemmata obscuriglobus UQM 2246]
          Length = 606

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 89/342 (26%), Gaps = 8/342 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   ++   ++  L++ +  F PV  A+   F   P+ +    +         ++    
Sbjct: 12  ALAATVVGAALVAVLFWARSIFIPVTLAVFFAFVLSPVVNRLQRRGIGRP-AAVILTVGL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +    +     +        +    K     Q    V +W++      +   +       
Sbjct: 71  LGLTGLGIGTVIAQQITRVAETSAEKRESIKQKLTSVKQWIAGGGESQFGKLVDDVEDVF 130

Query: 130 PQSL-KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +     S   +       +    S       +      F  I   F       +  ++
Sbjct: 131 ASAKPASNSNAVVVEQASPSMAAQWSGMLSPAAEVLGQAAFTFILTVFMLLKREDLRNRM 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L          K      + I    L   ++    G ++  + +  GV   +  G I 
Sbjct: 191 IRLLGAGKITTTTKAVDDASQRISKYLLSQLMVNTAFGAIITISLFALGVKYSILWGFIA 250

Query: 249 AIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +M  +P           +           G       +         I +  + P L G
Sbjct: 251 TLMRYVPYIGTWVGLIPPLLFSVATAPEWGGGWGQPVAVLALFLGLEAICNNLVEPKLYG 310

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             + L  +             G +GL +   L   + V+ + 
Sbjct: 311 QSMGLSEVAQLVSAAFWAFMWGPIGLILSGPLTVCLLVLGRH 352


>gi|260767738|ref|ZP_05876673.1| permease PerM [Vibrio furnissii CIP 102972]
 gi|260617247|gb|EEX42431.1| permease PerM [Vibrio furnissii CIP 102972]
          Length = 357

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/356 (13%), Positives = 113/356 (31%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+F   +++YF     AP+L A+++ +             + S TF
Sbjct: 10  KRRFSDPHAVSLVAILFFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVQLCRW-KISRTF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  V+ + + +  +  L      ++  L++ +             L D    + + E
Sbjct: 69  AVILVIVAFIGVMLFAVFGLVPTIWQQIVNLINDIPNMYTGLQKFIATLPDRYPELASLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+             + ++  L FF    
Sbjct: 129 IVEPIMNNAKNKALSMGESVVKGSLASLVSIAT---------LAVYLILVPLLVFFLLKD 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                ++             ++   + + I +   G  +  +  G V    + +  +   
Sbjct: 180 KQEMLRIVRGVLPRNRKLATEVWHEMNQQISNYIRGKVLEILIVGGVSYVTFAVLELRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V      +IP       T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGFSVLIPYIGAAVVTVPVAIVALFQWGVTPEFYYLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +WK      +E  + 
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEPPQT 355


>gi|171741160|ref|ZP_02916967.1| hypothetical protein BIFDEN_00227 [Bifidobacterium dentium ATCC
           27678]
 gi|171276774|gb|EDT44435.1| hypothetical protein BIFDEN_00227 [Bifidobacterium dentium ATCC
           27678]
          Length = 492

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/348 (9%), Positives = 102/348 (29%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  ++    +     +      ++ +L +     P+    +        F ++
Sbjct: 49  RALLYIAIAIVVFSFCWRSWGQIAYLVMDIVVSLFLALAVEPVVVPLVKH-GWKRAFASL 107

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A V +  +            + ++  +++ +    +         ++            
Sbjct: 108 FALVLLAVILCTLFGLFGNMFVQQVIAMINGLPDLYKQICDFVSQYTN------------ 155

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    SL       ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 156 FELPEINSLGSEILKNIQTSWVTDFAGTALSTVSGLFSFLLNLMTIVMTTYYISAAGPKL 215

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S      I+A+           +  VP  + L
Sbjct: 216 RRAACQWMAPAAQRRFLFVWTVSQGQISSFLFSRAILALLNATFTAICLEVLHVPYWLPL 275

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   + +  IP     I      ++      I+    +  +  +   I +    P +  
Sbjct: 276 ALFCGVTSQFIPMLGTYIGGALPVLFAWGNRGIWYGIAVLAFICVYQQIENLIFAPKISQ 335

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G LG F+   + A I  I++       
Sbjct: 336 RTMNINDAVAFLAVLAFGSLFGALGAFLALPVTASIQTIFRTYTKRYD 383


>gi|115522818|ref|YP_779729.1| hypothetical protein RPE_0793 [Rhodopseudomonas palustris BisA53]
 gi|115516765|gb|ABJ04749.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisA53]
          Length = 355

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/336 (21%), Positives = 139/336 (41%), Gaps = 3/336 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +I  + L   + L  F++ +L  L+I     P++    +   +  +  AV     V
Sbjct: 8   FFLLLIAAVTLAFGWVLMPFYSGLLWGLVIAILFMPLHRRLSAAMRDRDSLAAVSTVAIV 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   ++PL  +      E     S++         + + ++      W ++   +     
Sbjct: 68  IMSVLLPLSLIGAALAREAAITYSRLQSREFDLARLWQQVTGALPS-WINDWINRVELAD 126

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                   +     G  F+   A   G    ++ +++  M+  LFF +RDG ++SQ++  
Sbjct: 127 LGELQNKLSDGLLKGSQFLAGQALTIGQNTFEFAINLGVMLYLLFFLFRDGEALSQRIRD 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    + ++      VIR+T  G  +IA+ +G + G   W  G+   +   V+ A 
Sbjct: 187 ALPMR-EHLFDELLTKFIVVIRATIKGNMVIAMLQGALGGLMLWFLGIGGALLWAVVMAF 245

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++++P     + +  V+IYLL  G ++    L  +G   + +VD  LRP LVG   K+P 
Sbjct: 246 LSLLPAIGAGLVWLPVAIYLLATGAVWKGVLLIAYGTFVIGMVDNLLRPILVGKDTKMPD 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                  +GG+   GL G  +GPV+ A+   +W   
Sbjct: 306 YVVLISTLGGLEVFGLNGFILGPVIAAMFIAVWDIF 341


>gi|327440180|dbj|BAK16545.1| predicted permease [Solibacillus silvestris StLB046]
          Length = 409

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 117/338 (34%), Gaps = 5/338 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
             +    P +  +I+ +   P     +   +       +I  + V+ L  + +L +F + 
Sbjct: 64  LFEVIILPGVLGVILFYLLRPPLKLLVRW-KVPRALAILILYIVVIALITLLVLLVFPFL 122

Query: 86  MLEMKELVSKVV----LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
             +   LV +            +               +  + + L+      I +    
Sbjct: 123 RDQFTNLVQEFPVVLMALANDLLAFLNNSHFSEYFEKINFDYNQILTDFTDSFITTVKVT 182

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +    +    + F        LS++ +    F+   +G  + + +  L          
Sbjct: 183 LGSLATGVATGITGFLSTVTGIILSLVIVPFITFYLLYEGDKMPRFILLLFPPRMRKRIG 242

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   + K I S   G  +++   G+++   + + G+P  + LG +  I +++P   P  
Sbjct: 243 DVLHDMDKQISSYIQGQILVSFCIGVMMTIGFLIIGMPYALLLGFLAMITSVVPYLGPAI 302

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +  + I  + +    L +   I   I  K + P ++G  + +  +   F L+    
Sbjct: 303 AATPAAIIAIVNSPWLLVKLAIVWTIVQLIEGKFISPQIMGKSLSIHPITIIFVLLTAGS 362

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G+ G+ +G    ALI V+   +    K+   +  S+
Sbjct: 363 LFGVPGVVLGIPGYALIKVLISHTYRLFKQRYNRFQSD 400


>gi|156975460|ref|YP_001446367.1| hypothetical protein VIBHAR_03191 [Vibrio harveyi ATCC BAA-1116]
 gi|156527054|gb|ABU72140.1| hypothetical protein VIBHAR_03191 [Vibrio harveyi ATCC BAA-1116]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 111/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      +    +     TF
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQMC-RLGIPRTF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +  + L ++ +  L      ++  L++ +             L      +   +
Sbjct: 69  SVITVILIFIGLMLIAVFGLVPTIWTQVGNLINDIPNMYAGLQKFIATLPQRYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETVVTNAKNQALGLGESVVKGSLASLVSLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMMSMASGILP-KNRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L +   +   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGVIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSTEENEP 353


>gi|330998169|ref|ZP_08321995.1| hypothetical protein HMPREF9442_03104 [Paraprevotella xylaniphila
           YIT 11841]
 gi|329568861|gb|EGG50659.1| hypothetical protein HMPREF9442_03104 [Paraprevotella xylaniphila
           YIT 11841]
          Length = 420

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 109/351 (31%), Gaps = 12/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAVIAT 67
           +G+M    + + +  L  L     P   A  + +  +P    F  K    +      I  
Sbjct: 13  RGLMVVAGLGLSIYVLNLLSTVLLPFFIAWFLAYMIYPTVKFFQYKLHLHNRILCIAITL 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++         +    + E       +    +         S         +      
Sbjct: 73  LLILAAIAGFFWLIIPPAIAEFVRFRDLIADFIKETGNSTITRSIEIFFQQNIDQNAFIR 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              ++  + +           + +        F+   L    +++ LFF   D   +S+ 
Sbjct: 133 LLHENNVMEALKVAINQLWSLVSQ-----TFDFIIAILGFCMVLLYLFFILLDYEKLSEG 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L       +  ++   V   + S F G  ++A   G++    + +   P  + LG+ 
Sbjct: 188 WIKLVPKRSRRFAAELVDDVQHGMNSYFRGQALVAFLVGILFSIGFLIIDFPLAIGLGMF 247

Query: 248 TAIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLF-----LWGAIELFIVDKTLRPFLV 301
              + ++P    I F   + + LL   +   +  L      +   +   I D  L P ++
Sbjct: 248 IGFLNLVPYMQAIGFIPTLLLALLKANDTGESFWLILLSACIVFIVVQSIQDAFLVPKIM 307

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  + L        L      +GL+GL I   L  L+   ++  I   +  
Sbjct: 308 GKLMGLNPAVILLSLSVWGYLLGLIGLIIALPLTTLLLSYYRRFIERDERK 358


>gi|161521467|ref|YP_001584894.1| hypothetical protein Bmul_4931 [Burkholderia multivorans ATCC
           17616]
 gi|160345517|gb|ABX18602.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
          Length = 353

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 137/344 (39%), Gaps = 3/344 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  FF  V    I+     P+     ++  +     A++   
Sbjct: 11  QKFFYFLLFAVTVGLCWVLAPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLTLT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +     + +           L    L+
Sbjct: 71  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDVIHALPTSVQHLLAKYGLT 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++                +     G     + +S   M+  +FF  RDG  I +++
Sbjct: 131 NIPGIQKKLTDGAAAISQFAAAQAL-SIGQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G + 
Sbjct: 190 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALM 248

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L  G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 249 AFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P        +GG+   G+ G  IGP++ AL    W     A +E
Sbjct: 309 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQE 352


>gi|255326282|ref|ZP_05367368.1| hypothetical membrane protein [Rothia mucilaginosa ATCC 25296]
 gi|255296736|gb|EET76067.1| hypothetical membrane protein [Rothia mucilaginosa ATCC 25296]
          Length = 428

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 104/346 (30%), Gaps = 11/346 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLS---ALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           G +  + + + L + Y      A V     A+ I     PI     S          +  
Sbjct: 90  GFLMTVGVGLALFAYYIFNNVGALVGWVTGAIFIALGLDPIVRRLESW-GIKRGIGVIAV 148

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
                      ++ +      +  + +       Q+ I                + +   
Sbjct: 149 LAGFAGAVTGLVMTIGPVISEQASKFIQYAPGIYQNTID-------SDWYHELDQRFNIS 201

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +++    ET   ++ ++         G         +I ++    +F     +I  
Sbjct: 202 TWVNENIPKFLETTFSSSQVNSFMSSLVSAGSTLAQSVTGVIIVLFLSLYFLTSMDTIKA 261

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L         K I+  + + + +  +G  ++A+    V        G      + +
Sbjct: 262 WGVRLAPASKRVRVKYITDKITESVGNYVMGQALVAVLNAFVAFFIMLFVGFSFPQLMAL 321

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+A IP    +    ++  +L+      A    +   + L +    + P ++   + 
Sbjct: 322 VVMILAFIPLVGGVIALILTSLILLTQGWSLALWFAVAYFLYLQVEAYLISPRIMARAVS 381

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P       +  G    G+LG  I     A + ++ +E  +  ++ 
Sbjct: 382 VPAGVAIISVAAGGALWGVLGALIAIPAAASMLILVREVFIPRQDQ 427


>gi|282880125|ref|ZP_06288845.1| membrane family protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305998|gb|EFA98038.1| membrane family protein [Prevotella timonensis CRIS 5C-B1]
          Length = 385

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 125/352 (35%), Gaps = 13/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +     +++ ++   + +L     P   A +  +  +P+      K      +   +I  
Sbjct: 29  RISATILLIIVVFYLVNYLSSVLLPFFIAWLFAYLLYPLVKFVQYKMHVKVRSLAIIITM 88

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V+ +    +  +    + ++ +L + +            + S I   +  ++   +  
Sbjct: 89  LAVLGVMAGVVYAIIPSMIEQIDKLNNILNNWISQTTHSSDFGSYISQWVEKNQAGIEKF 148

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +    L +T +                   +   ++ +  ++  FF  +D   ++  
Sbjct: 149 MKSKDFSELVKTTMPKLFS------IVGQTASIIISVVASLITLLYTFFILQDYEFLTDN 202

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +       +W ++ + V + + +   G  ++++  G++ G    +   P  +ALG++
Sbjct: 203 WIRIFPKKNRPFWSELMQDVERELNNYIRGQGLVSLCLGILFGIGLTIIDFPMAIALGIM 262

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             +M ++P    ++   ++   +       +  +       L   I   I D  L P ++
Sbjct: 263 MGLMNLVPYLHTLALVPMAFLAMLKAADTGQNFLIVFGLSLLVFLIVQVISDTVLTPKIM 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L        L      +G +GL +   L  L+   WK+ +   K+ +
Sbjct: 323 GKAMNLNPAILLLSLSIWGTLLGFIGLIVALPLTTLLIAYWKKYVTQEKQQE 374


>gi|114764029|ref|ZP_01443270.1| Lipocalin-related protein and Bos/Can/Equ allergen [Pelagibaca
           bermudensis HTCC2601]
 gi|114543621|gb|EAU46635.1| Lipocalin-related protein and Bos/Can/Equ allergen [Roseovarius sp.
           HTCC2601]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 114/342 (33%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I +V L+ L     P +    + +   P+      +   S        TV+++ +F
Sbjct: 14  IAAAIFVVMLWVLGDVLLPFVVGGAVAYFLDPVADRLE-RVGMSRGMATGTITVAMILIF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +    + +  +L+       +                            P    
Sbjct: 73  VILALAVVPALVRQTSQLIETAPELFRQLQAFLSTHF----------PSIMVEGSPVRET 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++S           +        M  ++  L  + + +   +   D  ++  ++DSL   
Sbjct: 123 LVSIGETIRERGAQLIDAVLTSAMSLINILLLFVIVPVVAVYMLLDWDNMVARVDSLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 +K++R + K +     GM  + +  G     A WL G+   + +GV+  I+  I
Sbjct: 183 DHAPVIRKLARDIDKTLAGFIRGMGSVCLILGFYYALALWLVGLNFGLVVGVVAGILTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    I   A++I L      G       +        F+    L P LVG  + L  + 
Sbjct: 243 PYVGAIVGGALAIGLALFQFWGEWVWIAAVAGIFFFGQFLEGNFLTPKLVGESVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ +   L A + V+ +  +    E++
Sbjct: 303 LILALSVFGSIFGFVGMLVAVPLAAALGVVARFLVDQYIESR 344


>gi|269968742|ref|ZP_06182734.1| permease PerM, putative [Vibrio alginolyticus 40B]
 gi|269826636|gb|EEZ80978.1| permease PerM, putative [Vibrio alginolyticus 40B]
          Length = 357

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 113/358 (31%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +           +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKMC-RMGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  +  + L ++ L  L      ++  L++ +             L +    +   E
Sbjct: 69  SVIIVILVFVGLMLIALFGLVPTIWTQVGNLINDIPNMYNGLQKFIVTLPERHPELANLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETVVTNAKNQALGLGESVVKGSLASLVSIAT--------LAVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + L  +   
Sbjct: 181 EEMLRIASGILP-KNRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFALLDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPPFYWLLLAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    + L  +     ++      G  G+F    L  L+  +W       +    +  
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSTEENEPVEQE 357


>gi|257875480|ref|ZP_05655133.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257809646|gb|EEV38466.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 412

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 114/336 (33%), Gaps = 6/336 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   PI    +   +    F  ++  + ++   I+ 
Sbjct: 73  FLFAPIGTFFSTLFAPVLIAGFLYYLLNPIVLFLMKTTKIKRLFAVILVLLLLVAAIILI 132

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + +    + ++  L   +    ++       ++D P            ++       LS
Sbjct: 133 FVSVIPNLVSQITSLAENIPTFAKNMESWISRIADDPFFKQID------IAQQLENLNLS 186

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L    +  +               + I+ +   LF+  +DG  +   L ++      
Sbjct: 187 YGSLLQQFLSGLSTSLGSIVSTIASATMIIVTVPFILFYMLKDGEKLVPNLKTVFPERRR 246

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + K + +   G  I  I         YW+ GV      GVI  +  +IP  
Sbjct: 247 EQIVGLLGDLNKTLSNYISGQAIECIFVATFTFIGYWMIGVNYAFLFGVIAGVTNLIPYL 306

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ + +    F A    +   +   +    + P ++G  + +  L     L+
Sbjct: 307 GPYLGLIPAVLVTVFDEPFRALLCCVVVLVVQQLDGNVIYPNVIGKSLAIHPLTIILVLL 366

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 GLLG+F+G    A+   I    +  IK++K
Sbjct: 367 VAGNLAGLLGIFLGVPFYAICRTIVVFIVRLIKDDK 402


>gi|324991328|gb|EGC23261.1| permease [Streptococcus sanguinis SK353]
 gi|324993686|gb|EGC25605.1| permease [Streptococcus sanguinis SK405]
 gi|324995001|gb|EGC26914.1| permease [Streptococcus sanguinis SK678]
 gi|325696326|gb|EGD38217.1| permease [Streptococcus sanguinis SK160]
          Length = 374

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 111/340 (32%), Gaps = 6/340 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  +     P L    + + + P+      K + +     +I    +  L  + +
Sbjct: 30  MITPIVSVVNTILIPFLVGGFLYYITNPLVKFLQEKLKINRMIGILITLSLLFGLIALGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L++               LS  P     +      +        LS 
Sbjct: 90  IYLLPILINQLSSLINSTQGLYWEIQSFVNQLSKNPLFRNLN------IQSTIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++  + +I   I L +F  DG  +   L+         
Sbjct: 144 VDILQNILNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   +   +     G++I A+  G +    Y + G+   +   + +++  +IP   
Sbjct: 204 NISSLLTNLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       +      +        ++  I   +    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G+LG+ +     +++  I K        +KE    
Sbjct: 324 SSNIYGVLGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQ 363


>gi|322376872|ref|ZP_08051365.1| membrane protein [Streptococcus sp. M334]
 gi|321282679|gb|EFX59686.1| membrane protein [Streptococcus sp. M334]
          Length = 388

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KINRVIAISIVFVIIAIFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    V   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVYLEDADRVIDDLVTKRLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VWASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRNYLTQFMPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|269960635|ref|ZP_06175007.1| permease PerM, putative [Vibrio harveyi 1DA3]
 gi|269834712|gb|EEZ88799.1| permease PerM, putative [Vibrio harveyi 1DA3]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 112/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      +    +     TF
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQMC-RLGIPRTF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +  + L ++ +  L      ++  L++ +             L      +   E
Sbjct: 69  SVITVILIFIGLMLIAVFGLVPTIWTQVGNLINDIPNMYAGLQKFIATLPQRYPELANLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETVVTNAKNQAIGLGESVVKGSLASLVSLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMLRMASGILP-KNRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSTEENEP 353


>gi|90423586|ref|YP_531956.1| hypothetical protein RPC_2083 [Rhodopseudomonas palustris BisB18]
 gi|90105600|gb|ABD87637.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/359 (22%), Positives = 158/359 (44%), Gaps = 5/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR ++ +       +++ I L   + L  F+  +L  ++I     P+     +   +  T
Sbjct: 1   MRRSIEDKS--FLLLVVVISLAFGWILWPFYGAILWGVVIAVVFAPLSRRLAALMPQRPT 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+I  + ++ + I+PL  +      E   +  K+   +   +   + + ++    WA+
Sbjct: 59  LAALITLLIIVFIVILPLTLVVASLAQEAASVYEKIQSKDLDLVRSFQEVLNVLPS-WAT 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L  ++            +     G  FI   A   G    D+ L +  MI  LFF  RD
Sbjct: 118 SLLERYGLASLGAVQDKLSAGLLKGSQFIATQALNVGQSTFDFVLELFIMIYLLFFLLRD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++S+++ +    L P   K +      V+R+   G  ++A+ +G + G  +W  G+ +
Sbjct: 178 EAALSRRIRTAIP-LRPEQQKALLNKFTVVVRAMIKGNMLVALLQGALGGLMFWFLGISA 236

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P     + +  V+IYLL  G+I+    L  +GA+ + +VD  LRP 
Sbjct: 237 SLLWAVLMAFLSLLPAVGAGLIWGPVAIYLLAIGSIWKGVLLIAYGALVIGLVDNILRPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LVG   K+P        +GG+   G+ G  IGPV+ AL   +W     + +++ +    
Sbjct: 297 LVGKDTKMPDYIVLISTLGGIEVFGINGFVIGPVIAALFIAVWDIFSASRQQDAQPALE 355


>gi|327470450|gb|EGF15906.1| permease [Streptococcus sanguinis SK330]
          Length = 374

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 109/336 (32%), Gaps = 6/336 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  +     P L    + + + P+      K + +     +I    +  L  + +++L 
Sbjct: 34  IVSVVNTILIPFLVGGFLYYITNPLVKFLQDKLKINRMIGILITLSLLFGLIALGVIYLL 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++  L++               LS  P     +      +        LS   + 
Sbjct: 94  PILINQLSSLINSTQGLYWEIQSFVNQLSKNPLFRNLN------IQSTIQQLNLSYVDIL 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N ++ +           ++  + +I   I L +F  DG  +   L+             
Sbjct: 148 QNILNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKLNISS 207

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +     G++I A+  G +    Y + G+   +   + +++  +IP   P   
Sbjct: 208 LLTNLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVGPSIG 267

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +      +        ++  I   +    L P +VGG +K+  +     L+     
Sbjct: 268 LIPMVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLLSSNI 327

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G+LG+ +     +++  I K        +KE    
Sbjct: 328 YGVLGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQ 363


>gi|289434177|ref|YP_003464049.1| hypothetical protein lse_0810 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170421|emb|CBH26961.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 378

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    ++FI+L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEVLAVVAVVFILLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 +I  ++ + L I+ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRILSVIIIFIAFIALIILAIMQLGPTLADQVTELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    L        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SSLQGVDLKAELEKLNISLPKIMSVVVDGVASSFGAIVSFVSGFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +              K+I + + K I +      I  I  G+     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAAIRTEAKQIIKEMNKTISTYISSQAIDCIVVGIFTFVGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G+I     +IP   P    A ++ + +  +   A  + +   I   +    L 
Sbjct: 246 QPYALLFGLIAGATNIIPYLGPFIGAAPAVIVALFTSPLQALLVIIVVTIVQQLDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  + A++  + 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPVYAVVKTVI 350


>gi|229128253|ref|ZP_04257234.1| hypothetical protein bcere0015_26980 [Bacillus cereus BDRD-Cer4]
 gi|228655112|gb|EEL10969.1| hypothetical protein bcere0015_26980 [Bacillus cereus BDRD-Cer4]
          Length = 357

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 120/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 21  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 80  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 135

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 136 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 195

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 196 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 255

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 256 NLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 316 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 353


>gi|229060593|ref|ZP_04197952.1| hypothetical protein bcere0026_26890 [Bacillus cereus AH603]
 gi|229167645|ref|ZP_04295381.1| hypothetical protein bcere0007_26070 [Bacillus cereus AH621]
 gi|228615807|gb|EEK72896.1| hypothetical protein bcere0007_26070 [Bacillus cereus AH621]
 gi|228718705|gb|EEL70331.1| hypothetical protein bcere0026_26890 [Bacillus cereus AH603]
          Length = 348

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 123/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLENK-KVPRGLAILLLYLFIITLTG 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S      +   +   I
Sbjct: 71  VAIGVVVPTISQQLMDLVKNMPTYIKEGKVYIQDLSHHRLFEWLSTQNYVSIETIEKNAI 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +       +   A+    I  +  L I  +   LF+ ++DG +   +  S+    
Sbjct: 131 EYLKEIPNT----LTSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSVLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  + K  
Sbjct: 307 ILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKTKRSKRK 348


>gi|255026696|ref|ZP_05298682.1| hypothetical protein LmonocytFSL_10790 [Listeria monocytogenes FSL
           J2-003]
          Length = 398

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|218768223|ref|YP_002342735.1| putative integral membrane protein [Neisseria meningitidis Z2491]
 gi|121052231|emb|CAM08554.1| putative integral membrane protein [Neisseria meningitidis Z2491]
          Length = 356

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|262373133|ref|ZP_06066412.1| PerM family permease [Acinetobacter junii SH205]
 gi|262313158|gb|EEY94243.1| PerM family permease [Acinetobacter junii SH205]
          Length = 397

 Score =  135 bits (339), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 126/348 (36%), Gaps = 6/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + ++L  LY LK    P + A  I +   P+  + + K          +  V
Sbjct: 7   RRIFILAGLALLLWVLYLLKPVVLPFVGAFFIAYLFSPLVDTLV-KFRLPRWLAISLVFV 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L  V L FL      ++      +            +L  +        +      
Sbjct: 66  GIGVLLTVVLWFLAPLVWEQLIYARDSIPAGIHWINAT--FLPWVSHTFNVVPMEIDTEQ 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++    +T    + I  +    ++ G+ F+     +I + I  F+F  D   +   L
Sbjct: 124 LSKAVMDYIQTNYSADSIQTMALRVAQSGLNFIQLGGIVILIPIIAFYFLLDWERMLDSL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A    I R    V+ +   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 184 RRLIPRPYEASTLTIVRECHSVLGAFVKGQFLVMLLLGIVYAVGLQLIGLEVGLIIGMVA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + ++IP          ++   +     +      + +   I   +    L+PFL+G  I
Sbjct: 244 GLASIIPYLGFGVGIIAAVIATLFQFGIDWMQLLLVGVVFMIGQMVEGYILQPFLLGDKI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G +  G LG+ I   + A+I V+ K +    + ++
Sbjct: 304 GLSPVAVVFAVLAGAQLGGFLGMLIALPVAAVIVVLLKHARNNYERSR 351


>gi|327490117|gb|EGF21905.1| permease [Streptococcus sanguinis SK1058]
          Length = 374

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 109/336 (32%), Gaps = 6/336 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  +     P L    + + + P+      K + +     +I    +  L  + +++L 
Sbjct: 34  IVSVVNTILIPFLVGGFLYYITNPLVKFLQDKLKINRMIGILITLSLLFGLIALGIIYLL 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++  L++               LS  P     +      +        LS   + 
Sbjct: 94  PILINQLSSLINSTQGLYWEIQSFVNQLSKNPLFRNLN------IQSTIQQLNLSYVDIL 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N ++ +           ++  + +I   I L +F  DG  +   L+             
Sbjct: 148 QNILNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKLNISS 207

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +     G++I A+  G +    Y + G+   +   + +++  +IP   P   
Sbjct: 208 LLTNLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVGPSIG 267

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +      +        ++  I   +    L P +VGG +K+  +     L+     
Sbjct: 268 LIPMVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLLSSNI 327

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G+LG+ +     +++  I K        +KE    
Sbjct: 328 YGVLGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQ 363


>gi|257454111|ref|ZP_05619385.1| permease [Enhydrobacter aerosaccus SK60]
 gi|257448589|gb|EEV23558.1| permease [Enhydrobacter aerosaccus SK60]
          Length = 408

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 122/348 (35%), Gaps = 5/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +  I   +Y L+    P L A I+ +   P+      K         ++  +
Sbjct: 16  KRLFISLFLVAIGYIIYQLQSVILPFLVAFILSYAINPLVQKLQDKAHIRRWVAILLVYL 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +  + L +L      +++     V  A  +     R        +       +   
Sbjct: 76  STGLMIGLILWWLIPLVWEQLQSAWKYVPTAIDYYNNTLRGWVRSHTPIRLPA--MQVRD 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L    +                  GM  ++    ++ + I +F+F  +      ++
Sbjct: 134 MSKGLVDFLKENYNITDARSFFTNLMLSGMNIINVAGIVVLVPILMFYFLYNWDERLVKM 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +  + +     +I++   + + S   G  ++ +  G+V      L G+   + +G++ 
Sbjct: 194 RHMIPNRYIPSVYRIAKESDEALMSFIKGQLLVMVLLGMVYAVQLQLIGLKVGLIIGMMA 253

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          +I   +     +  +   +     +   +    L+P L+G  I
Sbjct: 254 GIASFVPYLGFTLGFIAAIIAGLFQFGVDWVHLVLIVGAFMVGQAVEGYVLQPLLLGDKI 313

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G+ G+ I   L A++ V+++ +  + +E +
Sbjct: 314 GLSPLWVIFAVLAGAALAGIAGMLIALPLAAVLNVLFQHAYDSYRETE 361


>gi|209521729|ref|ZP_03270416.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209497846|gb|EDZ98014.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 371

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 148/346 (42%), Gaps = 5/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y            
Sbjct: 1   MKSDQLIERLAAVFALIVLVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTGVVGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
             A +  + ++ + + P ++  +     + ++V+ V    +     +P W+  IP    +
Sbjct: 61  LAATLIVLIILVVVLGPFVYAGFAFGTHVHQIVALVERLFESGLPDLPPWVQRIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + ++   S  I     L      +I       G+        +   I+  FFFY 
Sbjct: 121 IEAFWERVTSSNSELIAQLRTLAAPAGKWIL----AAGLAVTHGLGLLALSIVLAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G   +  L++    +       +  +    ++    G+   A+ + ++ G   WLAGVP
Sbjct: 177 GGEGAAAWLNAGMRRVAGERADYLLALAGSTVKGVVYGILGTALVQAVLAGFGCWLAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG+ T  ++++PGG  I +   +I+L   G+   A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLATFFLSVVPGGPVIVWLPAAIWLYQGGSTGWAIFLVVWGVLVVGMSDNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  + 
Sbjct: 297 LIGKNSDMPLILVMLGILGGALAFGFLGVFIGPTLLAVAYTVLHDW 342


>gi|258405391|ref|YP_003198133.1| hypothetical protein Dret_1267 [Desulfohalobium retbaense DSM 5692]
 gi|257797618|gb|ACV68555.1| protein of unknown function UPF0118 [Desulfohalobium retbaense DSM
           5692]
          Length = 371

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/353 (19%), Positives = 132/353 (37%), Gaps = 5/353 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +     +   +    L+ +KGF+ PV   +++     P+Y   +          +VI  
Sbjct: 11  QKRAFVLLTAGVSAGFLWLVKGFWQPVFWGILLAIVFQPLYRQVLRLCHGRQRLGSVITV 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            S++   ++PL  L    M E   L  +V+          R +      +       + +
Sbjct: 71  SSIVLGVVLPLFVLALAVMQESLSLYQQVLSGKIDIQQPVRLVEQ---SLPQLVDGLERI 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      +        F+     R G   +   +  + M+  L+FF++DG  I   
Sbjct: 128 GIDFDRLREILSQTALRASQFLANHLFRIGQSTVQVLIQTLIMLYLLYFFFKDGQGIVNV 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L            + +     +V R+T  G  +I I +G + G  +W+ G+   +  GV+
Sbjct: 188 LVRTIPLGDR-RERLLFNRFAEVARATIKGTLVIGIVQGGIGGGLFWILGLQGALLWGVL 246

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +++++P     + +    I L+  G       L   G++ + + D  LRP LVG   +
Sbjct: 247 MVLLSILPVVGSALVWGPAGIILIATGAYLKGGILLATGSVVIGLADNILRPALVGRETR 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LP        +GG+   GL G  IGPV+ AL   +W+   +   +        
Sbjct: 307 LPDYLILLATLGGLAVYGLAGFVIGPVVAALFLTVWEMFGLEFGKGDVAAEEE 359


>gi|116494273|ref|YP_806007.1| permease [Lactobacillus casei ATCC 334]
 gi|191637608|ref|YP_001986774.1| Predicted permease [Lactobacillus casei BL23]
 gi|239629657|ref|ZP_04672688.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065781|ref|YP_003787804.1| putative permease [Lactobacillus casei str. Zhang]
 gi|116104423|gb|ABJ69565.1| Predicted permease [Lactobacillus casei ATCC 334]
 gi|190711910|emb|CAQ65916.1| Predicted permease [Lactobacillus casei BL23]
 gi|239528343|gb|EEQ67344.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300438188|gb|ADK17954.1| Predicted permease [Lactobacillus casei str. Zhang]
 gi|327381659|gb|AEA53135.1| hypothetical protein LC2W_0801 [Lactobacillus casei LC2W]
 gi|327384826|gb|AEA56300.1| hypothetical protein LCBD_0802 [Lactobacillus casei BD-II]
          Length = 388

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 114/336 (33%), Gaps = 6/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I ++    L FL     P + A I+ + + PI +    K      +   +  + ++ L  
Sbjct: 37  IAWVFQPVLDFLGIIAPPFIFAGILFYLTVPIINRLE-KFGLHRGWAIGLLFIVLIGLLA 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             LL        ++  +V                L+D       + L    L+   +   
Sbjct: 96  WGLLRFIPAVSNQITSIVHSAPQIFDEIGKWLDNLND-----QQNILSQHDLNEIAAEVQ 150

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T  +   +            I  +  ++I    I LFF  +DG   +  +  +    
Sbjct: 151 SFFTGKQGAFVTGTISQLQNLIGIVGNVVITISTAPIILFFMLKDGDKFTPMVLHIVPTK 210

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K++   + + + S   G   +A+   ++    Y + G+   +  G++   + +IP
Sbjct: 211 LRRSVKQMLHEMNEKVGSYVQGQITVALCVAVMFMVGYSVIGLRYGLIFGLLACPLNLIP 270

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + +    +      + +   IE  I  + + P ++G  ++L  +     
Sbjct: 271 YFGSALAMIPPLIMGALTSPRMILAVIIVFFIEWLIETQVISPLVMGSKLELHPITIVVV 330

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      GL+G+ +G    A++ ++        ++
Sbjct: 331 LLTAGNLFGLVGVILGIPGFAVLKIVVTRFFSWYQQ 366


>gi|108757566|ref|YP_631778.1| hypothetical protein MXAN_3588 [Myxococcus xanthus DK 1622]
 gi|108461446|gb|ABF86631.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 367

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 107/339 (31%), Gaps = 8/339 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + ++   L    G   PVL AL   +   PI +    ++    T+   +       + + 
Sbjct: 26  LGLVFALLSVFGGVAVPVLLALSGAYIFNPIVTELEKRR-LDRTWGTTLVFAVGTLMLVG 84

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +L+L      E  +L      A+   +P    L          +  T+       L   
Sbjct: 85  AVLYLIPVFREEASKLPDFFHRASTQVVPKVEGLVGHSLPDLVRQRTTELGKQASELVQS 144

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +          F    A           L +  + +  FFF +D   +   +  L     
Sbjct: 145 AGPAAARILASFAGNTARLVVT-----LLGLSVVPVLAFFFLQDYPRLMGMVKDLLPRRA 199

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +    V +V+ +   G  I+     ++  +    A +   + +GVI     M+P 
Sbjct: 200 VGLVSRRFAEVDEVLSAFVRGQLIVGGVLSVIYAAGLSAARIDMAIVIGVIAGFGNMVPY 259

Query: 257 GAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                   +S+   +L     +    +     I   +    + P +VG  + L  +    
Sbjct: 260 LGTGVGIVLSLVGLMLSWQGPWQLAAVAATFVIGQMLEGFVITPRIVGEKVGLAPVAIIL 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++      G +G+ +   + A++ V+    +   +  +
Sbjct: 320 AILAFGELFGFVGILLAVPVAAILKVVLSVVVERYRRTR 358


>gi|296159881|ref|ZP_06842702.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295889864|gb|EFG69661.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 360

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 172/346 (49%), Gaps = 5/346 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTF 61
            +   +     + + ++L++L+ ++ F A V  A +I    WP+             +T 
Sbjct: 18  RLKKQKTASLALYIGLVLLALWVVRDFIAVVAWAGVIAIALWPLLRKVEGNRWFTGRTTL 77

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +A + T+ +  L ++P+       + E  +L      A ++GIP+P ++  +P G+    
Sbjct: 78  IAAVLTLLIALLVVLPVGIGIAQALREAHDLNEWFKTAQENGIPLPDFIQRLPFGVQQIS 137

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W +        +  +   L +     +      FG   +       FM++ LF  ++ G
Sbjct: 138 AWWQANLTQPLRESAAMKGLHSPA---VVTLGRHFGARAVHAVTVFAFMLVTLFVIFQAG 194

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S  L       F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P  
Sbjct: 195 PRLSGALLKGMRRGFGDDGAQLLQRMAAAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHV 254

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L  +TAI AM+P  AP++F   +++LL++G++  A  L ++G++ +FI +  +RP L+
Sbjct: 255 ALLAFVTAIAAMLPFCAPLTFGIAALWLLLQGSVAAAIGLAVFGSVVVFIAEHFVRPVLI 314

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + + 
Sbjct: 315 GNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLVQ 360


>gi|150396017|ref|YP_001326484.1| hypothetical protein Smed_0793 [Sinorhizobium medicae WSM419]
 gi|150027532|gb|ABR59649.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 379

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 111/351 (31%), Gaps = 9/351 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++   +  L        P L+ + + +   P+      +   +     + 
Sbjct: 18  LQRQLFFWLLVLVGFIAFLLVFSSILLPFLAGMALAYFLDPVADRLE-RLGLNRLMATIA 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + +  + L+ +      +  E + K+                     W +     
Sbjct: 77  ILVAFVVVLALSLMIIVPLVFTQAAEFIEKMPGYITKLQAFLTDSQTTLLPDWLAGQMAT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   L          + +  + +     GM  L+     +   +  F+   D   + 
Sbjct: 137 IKQNSAKLLEQ-----GASFLGSLFQQIWNSGMALLNILSLFVITPVVAFYLLLDWDRMV 191

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++DS     +    ++I+R +   I     G   + +  GL       L G+   + +G
Sbjct: 192 DRVDSWIPRDYVEVVRQIARDMNASIAGFVRGQGSLCVILGLYYAIGLTLVGLNFGLLIG 251

Query: 246 VITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +   +++ IP    +    +++ +       +      +        F+    L+P LVG
Sbjct: 252 LFAGMISFIPYVGSLVGLVLALGVALVQFWPDYIWILLVLAVFFSGQFLEGNILQPKLVG 311

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L+      G +GL +     A I V+ +  I     + 
Sbjct: 312 RSVGLHPVWLMFALLAFGALFGFVGLLVAVPAAAAIGVLVRFGIQRYLASD 362


>gi|311747682|ref|ZP_07721467.1| putative transporter [Algoriphagus sp. PR1]
 gi|126575670|gb|EAZ79980.1| putative transporter [Algoriphagus sp. PR1]
          Length = 362

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 125/337 (37%), Gaps = 16/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + +++  L   K    P+           P+ +   ++ +   T  +VI+ +
Sbjct: 13  KALSVLIFIIVLVFFLIVGKSLLVPLFMGGFFAVLFTPLSNWLEAR-KVPRTLSSVISLI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  + F+         +  +       +   V  W               ++  
Sbjct: 72  INITLVVGFVAFIISTVANFTNDFDNVSEKLTSYAKEVDEW-------------TYENFG 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++L   +        +    +  + F +  +      I + + +FFF      +++ +
Sbjct: 119 IDENLDEKASNDFIKTVLQENSKNITGFALKTVGSLSGSILIPVFMFFFLLYRDHLTEVM 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P   +     + K+++S  +G+  +     ++  +A+   G+   +  G+I 
Sbjct: 179 IRIYRDKDPQLVRMRITSLRKLLQSYVIGVLKVMGILAVLNVTAFTALGIKHAIFFGLIA 238

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A + +IP   P+    + +    L K ++F    +     +   I    L P +VGG + 
Sbjct: 239 AFLNIIPYVGPLVGAMMPMIYSFLTKDSLFYPIAVLASYQLIQLIEGNILTPKIVGGNVN 298

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L    TF GL+ G    G+ G+ +   ++A++  I++
Sbjct: 299 LNPFITFLGLLVGASIWGIAGMILIIPVLAILREIFE 335


>gi|283784810|ref|YP_003364675.1| putative outer membrane protein [Citrobacter rodentium ICC168]
 gi|282948264|emb|CBG87835.1| putative outer membrane protein [Citrobacter rodentium ICC168]
          Length = 370

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 144/355 (40%), Gaps = 4/355 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G   ++++ +       L  +F+ +L A I+    +P+ +   +   + +   +++  
Sbjct: 7   TKGFFLFLLVVVTWAFFDVLSPYFSAILWAAILTVIFYPVKNKLRTALGDRNGLASLLTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +  +PL  +      E+  +  K+   N     V   L       WA E    H 
Sbjct: 67  GIICLIVFIPLALILSSLAFELNVVYVKLQNNNAQFPEVIASLFAHMP-DWAREFLADHN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +      + +   G  ++   A   G     + +S   M+  LFF  +DG  + +Q
Sbjct: 126 LDSAAEIQQKLSEVALKGGQYLAGSAFLIGKGTFGFAISFGVMLYLLFFLLKDGPFLVRQ 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G  ++AI +G + G A+++AG+   +  G +
Sbjct: 186 ILDSLP-LSNFVKQHLFAKFAGVSRATVKGTVVVAIVQGTLGGIAFYIAGIEGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +I+L     ++    +  +  + + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGSAIVWGPAAIFLFSTQQLWQGFFIVGFFVVVVGLVDNILRPILVGKDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI-MAIKENKEKISSNF 360
           +P        +GG+   G+ G  IGP++ AL    W        + N E++   F
Sbjct: 305 MPDYLILITTLGGMEIYGINGFVIGPLVAALFIACWNILSGRDHEGNAEELDKEF 359


>gi|298487561|ref|ZP_07005603.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298157945|gb|EFH99023.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 354

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + ++  +++ + +  ++ L  F+  V  A+I+G    P+      K   S  
Sbjct: 1   MNETTLQYKTLIMLLVL-VTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      + + I+P++ +    + E   L   V               D+      +
Sbjct: 60  LTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNVESGQLDIAGYLAEFKDLLPHSIQA 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    +   + L+          G  ++   A  FG    D+ +S+  M+  L+FF RD
Sbjct: 120 LLDRLGMGDLEGLRDKITKGAMQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++A+ +G + G  +W   +PS
Sbjct: 179 GQELVRKIRTAFP-LGEQQKRRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPS 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   VI A ++++P     I +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 ALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|221210158|ref|ZP_03583139.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221170846|gb|EEE03312.1| putative membrane protein [Burkholderia multivorans CGD1]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAIAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +++  +L         +GIP+P  ++ +P G      W +         + + T + 
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP---LHAATAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               + +  F  +FG           FM++ LF   R G  ++ +L    +  F      
Sbjct: 152 GASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGAH 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ F
Sbjct: 212 LIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGATAWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            GL+GLF+GP LM ++ V+W E 
Sbjct: 332 FGLIGLFVGPALMTVLTVLWAEW 354


>gi|258543033|ref|YP_003188466.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256634111|dbj|BAI00087.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256637171|dbj|BAI03140.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256640223|dbj|BAI06185.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256643280|dbj|BAI09235.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256646335|dbj|BAI12283.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256649388|dbj|BAI15329.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256652374|dbj|BAI18308.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655432|dbj|BAI21359.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 381

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 98/349 (28%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + +       +I + ++ +      V ++++       +    +        +    
Sbjct: 37  SISRILRMTFSGAVIALVVWLMGDVLMVVFASVLCAVVLHGLSKILVRHLRLPYGWALSA 96

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++   +  +       + E   L   +           +        +        
Sbjct: 97  VICGLIGSAVFLVWNSGPAMISEALRLQDALRQQETALRSTLQSTPTGQMILNYLP---- 152

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S         +T    +    I    +           +++ ++IA  +F       +
Sbjct: 153 -ASLGGHQAGGGDTSSLASLGSRIAGSMTGILGSAFGAIGTLLVVLIAGLYFAMSPAIYA 211

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L         + +     + + +   G ++  +  G + G   W  GVP  +ALG
Sbjct: 212 NGFLRLVPVSKRPKVRDLLLRAGQTLWAWVAGQSLDMLVVGTLSGLGLWFIGVPLALALG 271

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +   IP    I     ++ L +         + +  ++  F+    L P +    +
Sbjct: 272 VLAGLCNFIPYIGAIMGAVPALLLALSLGTRETIMVAVLYSVIQFLEGNVLAPVIQRHAV 331

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++P   T          +G  GL     L A++          + E  +
Sbjct: 332 QMPPAITVLSQTLFGAILGFPGLIFASPLTAVLMATLDGLTPKLDEKDQ 380


>gi|221196526|ref|ZP_03569573.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221203195|ref|ZP_03576214.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221177129|gb|EEE09557.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221183080|gb|EEE15480.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAIAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +++  +L         +GIP+P  ++ +P G      W +         + + T + 
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP---LHAATAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               + +  F  +FG           FM++ LF   R G  ++ +L    +  F      
Sbjct: 152 GASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGAH 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ F
Sbjct: 212 LIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGATAWAVVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            GL+GLF+GP LM ++ V+W E 
Sbjct: 332 FGLIGLFVGPALMTVLTVLWAEW 354


>gi|125718561|ref|YP_001035694.1| permease, putative [Streptococcus sanguinis SK36]
 gi|323351040|ref|ZP_08086697.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|125498478|gb|ABN45144.1| Permease, putative [Streptococcus sanguinis SK36]
 gi|322122764|gb|EFX94473.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|325687092|gb|EGD29115.1| permease [Streptococcus sanguinis SK72]
 gi|325690976|gb|EGD32976.1| permease [Streptococcus sanguinis SK115]
 gi|325695077|gb|EGD36980.1| permease [Streptococcus sanguinis SK150]
 gi|327462046|gb|EGF08375.1| permease [Streptococcus sanguinis SK1057]
 gi|327462955|gb|EGF09276.1| permease [Streptococcus sanguinis SK1]
 gi|327474559|gb|EGF19964.1| permease [Streptococcus sanguinis SK408]
 gi|328946877|gb|EGG41014.1| permease [Streptococcus sanguinis SK1087]
          Length = 374

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 111/340 (32%), Gaps = 6/340 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  +     P L    + + + P+      K + +     +I    +  L  + +
Sbjct: 30  MITPIVSVVNTILIPFLVGGFLYYITNPLVKFLQDKLKINRMIGILITLSLLFGLIALGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L++               LS  P     +      +        LS 
Sbjct: 90  IYLLPILINQLSSLINSTQGLYWEIQSFVNQLSKNPLFRNLN------IQSTIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++  + +I   I L +F  DG  +   L+         
Sbjct: 144 VDILQNILNSVTNSLGSVLSAVVNTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   +   +     G++I A+  G +    Y + G+   +   + +++  +IP   
Sbjct: 204 NISSLLTNLNATVARYISGISIDALIIGALAYIGYSVIGLKYALVFAIFSSLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       +      +        ++  I   +    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMVITYAFTDPQKMVAALIYMLIIQQVDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G+LG+ +     +++  I K        +KE    
Sbjct: 324 SSNIYGVLGMIVAIPTYSILKEIAKFLANLYDNHKEAQQQ 363


>gi|330445198|ref|ZP_08308850.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489389|dbj|GAA03347.1| conserved hypothetical protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 358

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 114/352 (32%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF      P+L A+++ +      +    K     TF
Sbjct: 10  QRRFSDPHAVSLVAILLGGFLTIYFFGSLITPLLVAIVLAYLLEWPVARLT-KLGLPRTF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    L  + L  L      ++  L + V             L +         
Sbjct: 69  SVMLVLLLFAGLMSLALFGLVPTIWHQVVNLTADVPKMFNDLQVYVSSLPERYPDFVQPA 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +++ +   +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 QVVDLMNNLREKVLGMGESVVKGSLASLVSIAT--------LGVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + Q L  +          K+   + + I +   G  I  +  G+     + +  +   
Sbjct: 181 DEMMQTLLKVLP-KNRRLASKVGSEMNEQISNYIRGKVIEILIVGIASYVTFAVMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V LGV+  +  +IP     + T     + L   G   +   L L   I   +    L P 
Sbjct: 240 VLLGVLVGLSVLIPYIGAAAVTVPVAMVGLFQWGWTPDFWWLLLAYGIIQALDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G  G+F    L  L+  +W   + A  E
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWGALLSAEDE 351


>gi|153834113|ref|ZP_01986780.1| permease PerM [Vibrio harveyi HY01]
 gi|148869483|gb|EDL68481.1| permease PerM [Vibrio harveyi HY01]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 111/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      +    +     TF
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQMC-RLGIPRTF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +  + L ++ +  L      ++  L++ +             L      +   +
Sbjct: 69  SVITVILIFIGLMLIAVFGLVPTIWTQVGNLINDIPNMYAGLQKFIATLPQRYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETVVTNAKNQAIGLGESVVKGSLASLVSLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMMSMASGILP-KNRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSTEENEP 353


>gi|229543742|ref|ZP_04432802.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
 gi|229328162|gb|EEN93837.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
          Length = 363

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 101/318 (31%), Gaps = 11/318 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L  +     P+L    I +   P+      K         +I  +         +    
Sbjct: 35  VLRVVLAVCLPLLIGGFIAYILHPLVEFLY-KNGLPRGLAILIIYILFFGGTAYGVYRGL 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +M +L   +                   G+   +   KH       +I       
Sbjct: 94  PLVIAQMNDLSEHLPQFADQYRD----------GVVYLQTSMKHWPDGLQDQIDERIERF 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +      +    M  ++Y +++  +    F+  +D   + +   +L    +      
Sbjct: 144 ELWLSANVSNSINMLMQLVNYAIALAVIPFISFYLLKDFEHVKKAALALTPEKWRPSAAA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V + I     G  +  +  G +   A+ + G+   + LG+I  +  +IP   P+  
Sbjct: 204 FIRDVDRSIGGYLRGQLLDCLLIGFLSFVAFAILGMKYPILLGIIIGVTNVIPYFGPVLG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                 +    ++     + +   +  FI    L PF+VG  + L  L     L+ G   
Sbjct: 264 AIPVSVIAATISLKFVLYVVIIVFVLQFIESNILSPFIVGKSLHLHPLFIIIALIAGEEI 323

Query: 323 MGLLGLFIGPVLMALIAV 340
            G+ GL +    +A++ V
Sbjct: 324 AGIAGLILAVPALAVLKV 341


>gi|21958751|gb|AAM85497.1|AE013795_7 hypothetical protein y1931 [Yersinia pestis KIM 10]
 gi|45436849|gb|AAS62402.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
          Length = 382

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 138/346 (39%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ L
Sbjct: 34  IFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILL 93

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+      +   +P   W+  IP  G      W   +S   +
Sbjct: 94  FVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGAN 153

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G     + + +  M++     Y  G  ++  +    
Sbjct: 154 ALMAKVQPYIGATATWFVAQAAHVGY----FLIHLALMVLFSVLLYIHGEQVALGIRHFA 209

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  
Sbjct: 210 MRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICC 269

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I++   G+    T L +W  I   + D  LRP+L+     +P +  
Sbjct: 270 VAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTL-DNFLRPYLIRMEADMPMILI 328

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 329 LSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 374


>gi|284048848|ref|YP_003399187.1| protein of unknown function UPF0118 [Acidaminococcus fermentans DSM
           20731]
 gi|283953069|gb|ADB47872.1| protein of unknown function UPF0118 [Acidaminococcus fermentans DSM
           20731]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 127/349 (36%), Gaps = 5/349 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +++ +   +   + Y L  +F PV  A+ + F  +PI       K +   F   +A +  
Sbjct: 12  VIKLLFGLLGFGAFYLLGHWFLPVFLAIGMSFLLYPIVDRLERLKIKGRAFPNTLAVLIA 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             LF + L       ++ +   V+ ++ A             +  G  A +L        
Sbjct: 72  FLLFGLFLYAAANVLIVPLVTQVNTLLKAMPGLAAKANESISLFLGSEAQKLPPNTRDML 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q       T++     D +               +S+  +    F+F +D  ++ + +  
Sbjct: 132 QQAGSSLSTYVMGLLKDMLASTVQA-----AKSLVSLALVPFLSFYFLKDWRTLKKMVVG 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L  +       ++   + +++ +    M  +       L +   + GV   + LG +  I
Sbjct: 187 LFAYEKQPLADRVLSDMGRILCAYVDNMFKLCFVAAACLTAGNSILGVQYTLVLGFLAMI 246

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP    +  T  ++++ +      A  + +   +   +  + + P L+G  I L  +
Sbjct: 247 SELIPLVGSVVGTLSAVFIALLQKPSLALKVLVLYLVYYQVDAQVIMPNLMGHSITLHPV 306

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                ++ G +  G+ GL     ++++I V++     A +E    +  N
Sbjct: 307 LIILAVMVGGQIGGVAGLIFAVPVLSIIKVLYGYFWHAGEECPGSVDKN 355


>gi|170696850|ref|ZP_02887946.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|170138024|gb|EDT06256.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
          Length = 658

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 104/359 (28%), Gaps = 25/359 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           QG++   +   ++ +LYF +    PV  A+++ F   P+ +     K        V++ +
Sbjct: 25  QGLITLAVGVTVVAALYFAREILIPVTLAILLSFLVAPLANLLGRIKLGH-----VVSVL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG------------ 116
             + + +  ++ L      ++ +L   +             +  +               
Sbjct: 80  LAVTMSLSVIVVLGGVIAAQITDLAIGIPRYQASIDNKISAVHGLTVEKLNRLAGAAGQA 139

Query: 117 ------MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                            S     +                + A R     +    +   +
Sbjct: 140 LQRATVDQPQATRNSAPSASGVQQPAVLPVEVREPSQTPFQLARRVLSPVVRPLETAFIV 199

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            +           +  +   L                 + +   F+    I  G G+V+G
Sbjct: 200 FVVTIVILLQRDDLRDRAIRLLGSRDLHRTTTAMDEAARRLSRYFVSQLGINAGVGIVIG 259

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNATCLFLWGAIE 288
               + GVPS V  G++ A++ ++P         ++  L    +     A    +   I 
Sbjct: 260 IGLSIIGVPSPVLWGILAALLRLVPYVGIWISAILATALAAAVSPEWSMAIWSLVLFLIV 319

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +V + + P L G    L         +      G +GL +   L   + V+ +    
Sbjct: 320 ELLVGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRHVTR 378


>gi|328554360|gb|AEB24852.1| permease [Bacillus amyloliquefaciens TA208]
          Length = 353

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 112/330 (33%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K  F P+  A+ I +   PI      K     T   ++            +    
Sbjct: 35  IWLVIKSLFIPIFIAVFIAYLLLPITEWLHGK-GMPRTLSLLLIYFLFFGGIGWGVYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++++L   +    ++   + R L +           T H       ++       
Sbjct: 94  PVLIEQLQDLSESIPGLAENYNSMLRHLHN----------HTDHWPDGMHHRMDKMIQQT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +        R      DY L    +   +F+  +D  ++ + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVFDYILIAATIPFLVFYMVKDIDAMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL+ G ++W+ G+P  + LG++  I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGLIAGCSFWMFGLPYPLILGLVIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPTLLLALALSAKAVIIVIITIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G+ G+ +     A++ V     +    E+
Sbjct: 324 AGIPGMILAVPAAAVLKVTAIHFLRIRTEH 353


>gi|313904506|ref|ZP_07837882.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
 gi|313470648|gb|EFR65974.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
          Length = 430

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 115/348 (33%), Gaps = 10/348 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------KKEESSTFLAVIATVSVM 71
           I    +     F  PV   LII +   P+   +         K         V A ++V+
Sbjct: 34  IFFTGISAFLDFIYPVFLGLIIAYIMDPLVMLYQKNVFQRVSKNTIRRNLSVVAAVITVL 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I  ++ L    +  +   V  +    +    + + L ++             +    
Sbjct: 94  AGIIFLMVALIPQIVNSISTFVGNIETYAKSLQKLLKDLENLSSSWKFD---LSSVISQG 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +          ++ I      FG     + +  IF I  L    R   + S+ L S 
Sbjct: 151 EDMVEKLLADMPKNLNAILDTTVSFGKSIASWVIGAIFAIYFLIDKDRLKNAGSKLLRSF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   +        +++    +   +  +  G+       +A +P  + + V+  + 
Sbjct: 211 VLDRTYRNYVVFWERSNQILIRYIVYDVLDGLIIGVTNWFFMAVADMPYGLLISVVVGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            + P   PI   A+  ++L+  N + A    ++  +   +    L+P L    + +  + 
Sbjct: 271 NLAPTFGPIVGGAIGAFILVLINPWYALTFLIFTIVLQTVDGYILKPKLFAATLGVSGVW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               +V G R  G+ G+ +     A++  I+KESI+     ++     
Sbjct: 331 ILICIVVGGRMFGVGGILLAIPFAAIMDYIYKESILVSLAERKARREE 378


>gi|189352364|ref|YP_001947991.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221210990|ref|ZP_03583970.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gi|189336386|dbj|BAG45455.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221169946|gb|EEE02413.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
          Length = 350

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 137/344 (39%), Gaps = 3/344 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  FF  V    I+     P+     ++  +     A++   
Sbjct: 8   QKFFYFLLFAVTVGLCWVLAPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLTLT 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +     + +           L    L+
Sbjct: 68  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDVIHALPTSVQHLLAKYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++                +     G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NIPGIQKKLTDGAAAISQFAAAQAL-SIGQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G + 
Sbjct: 187 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L  G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P        +GG+   G+ G  IGP++ AL    W     A +E
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQE 349


>gi|219847676|ref|YP_002462109.1| hypothetical protein Cagg_0749 [Chloroflexus aggregans DSM 9485]
 gi|219541935|gb|ACL23673.1| protein of unknown function UPF0118 [Chloroflexus aggregans DSM
           9485]
          Length = 417

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/367 (12%), Positives = 108/367 (29%), Gaps = 17/367 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     + ++  + ++++   +        P +   ++ +   P+ + F           
Sbjct: 8   QIRRVARWLLVAVSIYLVGWLISHTGSAITPFVFGGVLAYLFLPLVNFFERWM--PRWLA 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--------- 113
            ++  +      +  + F+    + ++ EL+  +           R L +          
Sbjct: 66  ILVVYLLTFGALVAAIAFVIPPLIAQIVELIRTLPDIATIQREANRLLDEYEQLLASLPP 125

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                         S   S    +          F+           + + L    +   
Sbjct: 126 AIQSEVQSAIASAASEGLSTLRANFVSYLQGIGQFLITSVLSVV-NTVTFLLGFFLVPFW 184

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA- 232
           LF+   D  +    L+ L      A +  +  I+   +     G  I+    GL      
Sbjct: 185 LFYVLMDQRAGRDYLNRLIHPRLRADFWAMVSIIDYDLSGYLRGQLILGTSVGLAAWIGL 244

Query: 233 ----YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                    VP  V L V+  +  ++P   PI     +I L +  +   A  + +     
Sbjct: 245 TALNMAGMKVPYTVLLAVVAGVTEVVPVIGPIIGAIPAILLGLADSPTTALAVTILYIAI 304

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + +  L P ++G  + +        LV   +  GLLG  +   L A+   ++      
Sbjct: 305 QQLENHILVPRIIGESVGVHPAILMVVLVVCSQVFGLLGAILSAPLSAMARDLFLYLYGR 364

Query: 349 IKENKEK 355
           + +    
Sbjct: 365 LSDPPRP 371


>gi|322385892|ref|ZP_08059534.1| membrane protein [Streptococcus cristatus ATCC 51100]
 gi|321270071|gb|EFX52989.1| membrane protein [Streptococcus cristatus ATCC 51100]
          Length = 387

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 113/340 (33%), Gaps = 6/340 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  +     P +    + + + P+ +    K + +  F  +I  + +  L  V +
Sbjct: 43  MITPVVSVINTILIPFVMGGFLYYITNPLVTLLEKKLKINRIFGILITLLLLFGLVTVGV 102

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L++               LS  P     +      +        LS 
Sbjct: 103 IYLLPILINQLSSLINSTQNLYWEIQSFVNQLSKNPLFKSLN------IQSTIQQLNLSY 156

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++  + +I   I L +F  DG  +   L+         
Sbjct: 157 VDILQNILNSVTNSLGSVVSAVINTLMILIMTPIFLVYFLMDGHKLLPMLERTVLKRDKL 216

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   +   +     G++I A+  G +    Y + G+   +   + +A+  +IP   
Sbjct: 217 NISTLLTNLNATVARYISGISIDALLIGTLAYIGYSVIGLKYALVFAIFSALANLIPYVG 276

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       +      +        ++  I   I    L P +VG  +K+  +     L+ 
Sbjct: 277 PSIGLIPMLITYFFTDPHKMLEALIYMLIIQQIDGNILYPRIVGSVMKVHPITIMVLLLL 336

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++G+ +     +++  I K        +KE    
Sbjct: 337 SSNIYGIMGMIVAIPTYSILKEIVKFLANLYDNHKEAQQQ 376


>gi|322390053|ref|ZP_08063589.1| membrane protein [Streptococcus parasanguinis ATCC 903]
 gi|321143260|gb|EFX38702.1| membrane protein [Streptococcus parasanguinis ATCC 903]
          Length = 375

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 112/335 (33%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L A  + + + PI        +    F  +I  V +  +  + +
Sbjct: 30  LISPFVSVLNTILLPFLIAGFLYYITNPIVELLEKHLKIKRVFGILITLVLLFGIIGLGI 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +L    + ++  L++           + R LS  P     +      +        LS 
Sbjct: 90  FYLLPILINQLTSLINSTQGLYWEVQSLVRKLSTNPLFQNVN------IQSTIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++    +I   + L +F  DG  +   L+         
Sbjct: 144 MDILQNLLNSVTNSLGSVVNTIVNTVFILIMTPVFLVYFLVDGKKLLPMLERTILRNDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   +   + + +     G++I A   G +    Y   G+   +   + + +  +IP   
Sbjct: 204 HISSLLISLNETVSRYISGISIDAFIIGTLAYIGYSFIGLKYALVFAIFSGLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I      ++       ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PTIGLIPMIITYAFTDMDMMIKAVIYMLIIQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +   + ++   I K  +     ++
Sbjct: 324 SSNIYGIIGMVVAIPVYSIGKEIVKFLVNLYDNHR 358


>gi|319410469|emb|CBY90829.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis WUE 2594]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|319898869|ref|YP_004158962.1| permease protein [Bartonella clarridgeiae 73]
 gi|319402833|emb|CBI76384.1| permease protein [Bartonella clarridgeiae 73]
          Length = 385

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 119/351 (33%), Gaps = 11/351 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   ++ ++       P ++ +++ +   PI   F  K      F  V+ T
Sbjct: 29  KQIFFWLGTLIFFVIFMFIFGSILFPFIAGIVLAYFLNPIVQVFE-KIGIHRVFGTVLIT 87

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + ++ +F+V L+ L      ++++ VS  + +            +      +      + 
Sbjct: 88  LFIIVIFVVALIILIPIVSGQIQKFVSNGLPIYVNRIQNFFIEHNFDWVRRYFDSDPNEL 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ ++L   S     ++ I  +     + G   ++     +   +  F+   D   + +
Sbjct: 148 HTNIKALLGQS-----SDFITSLLNSLLKSGKSIVNIISLFVVTPVVTFYILLDWPHMVE 202

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          + +   + + +     G     +           + G+   + +G+
Sbjct: 203 AVDSWIPRSHLTTVRSLFHEMDRAVAGFVRGQGTACLILAGYYAIGLTITGLNFALLIGM 262

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGN----IFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ IP    +    +SI +               +     I  FI    L+P LVG
Sbjct: 263 FVGLISFIPYIGTMIGFVLSIGVAWVQFYPNYWEWIVIVMAVFFIGQFIEGYILQPKLVG 322

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L       G  G+ +     A++ V+ + ++     ++
Sbjct: 323 SSVGLHPVWLMFALFAFGSLFGFTGMLVAVPAAAIVGVLVRFALHIYLNSQ 373


>gi|289625440|ref|ZP_06458394.1| hypothetical protein PsyrpaN_09999 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649278|ref|ZP_06480621.1| hypothetical protein Psyrpa2_16276 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330866824|gb|EGH01533.1| hypothetical protein PSYAE_06090 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 354

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + ++  +++ + +  ++ L  F+  V  A+I+G    P+      K   S  
Sbjct: 1   MNETTLQYKTLIMLLVL-VTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      + + I+P++ +    + E   L   V               D+      +
Sbjct: 60  LTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQA 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    +   + L+          G  ++   A  FG    D+ +S+  M+  L+FF RD
Sbjct: 120 LLDRLGMGDLEGLRDKITKGAMQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++A+ +G + G  +W   +PS
Sbjct: 179 GQELVRKIRTAFP-LGEQQKRRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPS 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   VI A ++++P     I +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 ALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|254523945|ref|ZP_05136000.1| permease [Stenotrophomonas sp. SKA14]
 gi|219721536|gb|EED40061.1| permease [Stenotrophomonas sp. SKA14]
          Length = 389

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 127/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +   ++   ++ L     P + AL + +   P+     +    S     V+   
Sbjct: 14  RRLKYILFAGLVGWVVWLLAPILTPFVLALALAWLGDPLVDRIEA-TGRSRMTGVVLVFA 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ + +  LL L      ++  L++    A      +              E+      
Sbjct: 73  AMVLVIVALLLVLVPMIERQITTLIAVAPQAQAW---LMEKGIPWFEQKTGLEVMQWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S              + SR G   + + ++I+ + I  F+F RD   + +++
Sbjct: 130 DRLIEWVRSHWQQAGGFATTFMGYVSRSGFAMVTWVVNILLLPILAFYFLRDWDKLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+           ++R   +V+ +   G  ++ +  G++      L G+   + +G+I 
Sbjct: 190 ASVIPRNHIGTISALARESNEVLGAFIRGQFLVMLALGVIYAGGLSLVGLKLGLLIGLIA 249

Query: 249 AIMAMIPGGAP----ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP        +     ++      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGILMAVVAALVQAQGFDLKLLILVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +    ++++
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVTNVLLRYAHQRYRQSE 358


>gi|182435547|ref|YP_001823266.1| hypothetical protein SGR_1754 [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776182|ref|ZP_08235447.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464063|dbj|BAG18583.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326656515|gb|EGE41361.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 371

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/353 (12%), Positives = 109/353 (30%), Gaps = 18/353 (5%)

Query: 8   PQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           P+ ++  + ++        + + L G    VL A  +     P      ++         
Sbjct: 6   PRAMVLALALYACFQLGSWAFHQLIGLLTNVLIAFFLALAIEPAVGRMAAR-GMRRGLAT 64

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  ++V    +  ++ L      ++ ++V +        I             W ++ +
Sbjct: 65  FLVFLAVTIFGLGFVVLLGSMLAGQIVDMVDEFPKYIDSVIN------------WVNQTF 112

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              LS  +    L  +      +              L     ++ + +  F+F  DG  
Sbjct: 113 RTELSRVEVQDSLLHSDWLQKYVQNSATGVLDVSTTVLGGLFRLLTIFLFSFYFAADGPR 172

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + L S+          +   I             ++A+  G+       + GVP   A
Sbjct: 173 LRRALCSVLPPARQTEVLRAWEIAVDKTGGYIYSRGLMALISGVAHYVLLVILGVPYAPA 232

Query: 244 LGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V   +++  IP        A+ + +    + + A  +  +  I     +  L+P L  
Sbjct: 233 LAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDPWYALYVLGFVVIYQQFENYVLQPKLTA 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             + +     F  ++ G   +G +G  +    +A +       +       + 
Sbjct: 293 KTVDIHPAVAFGSVIAGTALLGAVGALVAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|323353414|ref|ZP_08087947.1| permease [Streptococcus sanguinis VMC66]
 gi|322121360|gb|EFX93123.1| permease [Streptococcus sanguinis VMC66]
          Length = 365

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 111/338 (32%), Gaps = 7/338 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSETIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + G    GL+G+     + A+I  + +E ++  +E  E
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEERNE 360


>gi|99081696|ref|YP_613850.1| hypothetical protein TM1040_1855 [Ruegeria sp. TM1040]
 gi|99037976|gb|ABF64588.1| protein of unknown function UPF0118 [Ruegeria sp. TM1040]
          Length = 380

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/367 (13%), Positives = 123/367 (33%), Gaps = 29/367 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +   + +  W I  ++   + + L     P +    I +   P+      +   S     
Sbjct: 3   LPARKQLKYWGIAAVLFAVVMWALGNVLMPFILGGAIAYIIDPLADRLE-RAGLSREGAT 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + TV  + +F++ LL +    + +M +LV  +  A  +     +     P     +   
Sbjct: 62  AVITVGAVLIFLILLLLIVPALINQMIDLVQTLPQALSNLRAFAQ--ERFPSLFEDNSQL 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + L+    +       L    +               +  + ++ + +   +   D   
Sbjct: 120 REALAGLWQIIQDKSVTLLQTFVGSAMSLL--------NIVVLLVIVPVVAVYLLVDWDR 171

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++D L         + ++  + +V+ S   GM ++ +  G     A  L G+   +A
Sbjct: 172 MVARIDELLPRDHAPVVRHLASEIDRVLSSFIRGMGLVCVILGTYYAVALMLVGLNFGLA 231

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKG-----------------NIFNATCLFLWGA 286
           +G +  ++  IP    I    ++I L +                   +      +    A
Sbjct: 232 VGFVAGLVTFIPYLGAIIGGVLAIGLALFQFWGALEGADGEMIRQGTDWLRIALVAGIFA 291

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           I   +    L P LVG  + L  +     L       G +G+ +   + A+I V+ + ++
Sbjct: 292 IGQMVEGNFLTPKLVGNSVGLHPVWLLLALSVFGALFGFVGMLVAVPVAAVIGVVARFAV 351

Query: 347 MAIKENK 353
                ++
Sbjct: 352 EQYLHSR 358


>gi|306845823|ref|ZP_07478391.1| transmembrane protein [Brucella sp. BO1]
 gi|306273715|gb|EFM55553.1| transmembrane protein [Brucella sp. BO1]
          Length = 352

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINSYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L L G + + +VD  LRP LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVLVGVLVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|167462972|ref|ZP_02328061.1| hypothetical protein Plarl_10482 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 378

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 124/339 (36%), Gaps = 5/339 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI +     +K    P++ A I  +   PI        + +  +  +   + ++ +  
Sbjct: 40  ISFIFVPIGIIVKTVMLPLILAGIAFYLLNPIVDLLERH-KINRIYSIIGLFLVIIGVVT 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +L +F +   ++  LV  +    Q         +        ++      +   +   
Sbjct: 99  ILILTVFPFVKDQVLNLVDNLPKYGQQVAEKFNEFAGTSLFHQFNDKLNNVSTDIMNYIS 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + +  N    +            +  L+I  +   LF+  +DG  + + + ++    
Sbjct: 159 EKSSVILQNAWASVSGVVGTVT----EIVLAIATLPFILFYLLKDGRKLPRFILNMLPVK 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              +  ++   +   I S   G  I++   G +L   Y + G+   + L +I ++ +++P
Sbjct: 215 TREHTYQMMYEMHHQISSYIRGQIIVSFCIGFLLFVGYLVIGLNYALVLAIIASLTSIVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     +I +    +      L +   I   I  K + P ++G  + +  +   F 
Sbjct: 275 YLGPVIAITPAIIISAVTSPAMLVKLAVVWIIVQSIEGKFISPQVMGKNLSVHPITIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++ G    G+LG+       A++ VI    +  +K  ++
Sbjct: 335 ILIGGNLFGILGIIFAVPGYAVLKVIVLHILSGLKAIRD 373


>gi|260426954|ref|ZP_05780933.1| membrane protein [Citreicella sp. SE45]
 gi|260421446|gb|EEX14697.1| membrane protein [Citreicella sp. SE45]
          Length = 355

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 107/342 (31%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +      V L+FL     P +    I +   P+      +   S        T+  + LF
Sbjct: 12  IAAIAFAVVLWFLGDVLLPFVLGGAIAYFLDPVADRLE-RAGMSRAMATGTITIGAVVLF 70

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +      +  +L+       +                            P    
Sbjct: 71  VILALAVAPALARQTSQLIDTAPELFRQLQSFLTTHF----------PSIMVEGSPVRET 120

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++S           +        M  L+  L  + + +   +   D  ++  ++D L   
Sbjct: 121 LVSIGETIKERGAQLFDTVLTSAMSLLNILLLFVIVPVVAVYMLLDWDNMVARVDELLPR 180

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + ++R +   +     GM  + +  G       WL G+   + +GV+  ++  I
Sbjct: 181 DHAPVIRGLAREIDATLAGFIRGMGSVCLILGTYYAVTLWLVGLNFGLVVGVVAGMLTFI 240

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    I   A++I L      G+      +        F+    L P LVG  + L  + 
Sbjct: 241 PYVGAIVGGALAIGLALFQFWGDWVWIAVVAGIFFFGQFLEGNFLTPKLVGESVGLHPVW 300

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ +   L A + VI +  +    ++K
Sbjct: 301 LILALSVFGSLFGFIGMLVAVPLAASLGVIMRFLVGQYTDSK 342


>gi|291549176|emb|CBL25438.1| Predicted permease [Ruminococcus torques L2-14]
          Length = 407

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 104/340 (30%), Gaps = 13/340 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIATVSVMCLF 74
           + G   P +    I F      S    K                     ++  +  + + 
Sbjct: 38  IWGILFPFVFGGAIAFVINVPMSFLEKKIFGKTKDGNKVGKKLARPISLLLTIILAVGVI 97

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQSL 133
            + +  +       M  L+  +           R    +    M        +       
Sbjct: 98  ALVMFGVIPQLTRTMGSLMISIANFVPQMQNWIREFSHNNQDIMKLVNQVQFNQDQAIKW 157

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I        N ++            F  + ++  F    LF   +    I +   +   
Sbjct: 158 GISILGSGAGNMMNTTMSAVGSIVSGFATFFIAFSFACYILFQKEKLHVQIRKVFFAFIS 217

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 + KI  +  +   +   G  + A+  G +      +  +P  + +G + A  A+
Sbjct: 218 KQKAEAFLKICSLTYQTFANFLTGQCVEAVILGSMFVVTLSILKMPYALLIGTLIAFTAL 277

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP        AV  +L+   N   A    +   I   I    + P +VGG + LP +   
Sbjct: 278 IPIFGAFIGCAVGCFLIFMVNPKQAILFIIVFLILQQIEGNLIYPHVVGGSVGLPSIWVL 337

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +  G   MG++G+ I   L++++  I++E +    + K
Sbjct: 338 AAVTIGGNLMGIVGMLIFIPLVSVLYTIFREFVYLRLKEK 377


>gi|82701870|ref|YP_411436.1| hypothetical protein Nmul_A0737 [Nitrosospira multiformis ATCC
           25196]
 gi|82409935|gb|ABB74044.1| Protein of unknown function UPF0118 [Nitrosospira multiformis ATCC
           25196]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 144/344 (41%), Gaps = 3/344 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q     M++ + +  ++ L  F+  V  A ++     P +    +   +     A    
Sbjct: 7   RQKAFLLMLIAVSVAFIWILLPFYGTVFWAAVLAIIFTPFHRKLQAALGQHRNLAAFTTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ + I+P+  +    + E   +  K+     +     + ++        + L    L
Sbjct: 67  LLILVIVILPVTLMTISLLQEGTIVYQKIRSGELNFGMYFQQIASASPPWLVNLLDRSGL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           ++   L+ +  + +   G  F+   A   G    ++ +S   M+  LFF  RDG +++ +
Sbjct: 127 TNMAELQDMLSSGVLR-GSQFVATHALSLGQNAFEFLVSFGIMLYLLFFLLRDGDNLAAK 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L   + + +S     VIR+T  G   +A  +G + G  ++  G+   +  G +
Sbjct: 186 IKQAMP-LTMEHKRHLSSKFTTVIRATVKGNVAVAAIQGALGGVVFYFLGIQGALLWGFM 244

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     + +  V+IY L  G ++  T L  +G   + +VD  LRP LVG   K
Sbjct: 245 MAFLSLIPAVGAGLIWIPVAIYFLFTGAVWQGTVLIAFGVFVIGLVDNLLRPVLVGRDTK 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +P        +GG+   GL G  IGPV+ AL    W     A+ 
Sbjct: 305 MPDYVVLISTLGGLVLFGLNGFVIGPVIAALFMSAWDLFAAAMD 348


>gi|297191665|ref|ZP_06909063.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721600|gb|EDY65508.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 390

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 91/320 (28%), Gaps = 14/320 (4%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A  +     P      ++          +   +V+   +  ++ L      ++ E+V   
Sbjct: 39  AFFLALAIEPAVGRMAAR-GMRRGLATFLVFFAVLIAGVGFVVLLGSMLAGQIVEMVEDF 97

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
                  I                  +   LS  +    L  +      +          
Sbjct: 98  PQYLDSVIRWINT------------TFHTELSRVEVQDSLLRSDWLRKYVQNSATGVLDV 145

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               L     ++ + +  F+F  DG  + + L S+          +   I          
Sbjct: 146 SATVLGGLFKLLTIFLFSFYFAADGPRLRRALCSVLPPAKQTEVLRAWEIAVDKTGGYLY 205

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNI 275
              ++A+  G+       +  VP   AL V   +++  IP        A+ + +    + 
Sbjct: 206 SRGLMALISGVAHYILLEILEVPYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFTVDP 265

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           + A  +  +  I     +  L+P L    + +     F  +V G   +G +G  I    +
Sbjct: 266 WYALWVLGFVVIYQQFENYVLQPKLTARTVDIHPAVAFGSVVAGTALLGAVGALIAIPAV 325

Query: 336 ALIAVIWKESIMAIKENKEK 355
           A +       +       + 
Sbjct: 326 ATLQAFLGAYVKRYAVTDDP 345


>gi|192360560|ref|YP_001981648.1| hypothetical protein CJA_1152 [Cellvibrio japonicus Ueda107]
 gi|190686725|gb|ACE84403.1| putative membrane protein [Cellvibrio japonicus Ueda107]
          Length = 387

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/342 (22%), Positives = 141/342 (41%), Gaps = 5/342 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                   ++ + +  +  L+ FF  +  A  I    +P++   +      +   A++  
Sbjct: 6   ETRTFLLFLLAVSIAFILVLRPFFGTIFWACAITIIFYPLHLRLVELTRGRTNTSALLTL 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V+ + + ++P +FL    + E      K+       I   +++  +     A +   +HL
Sbjct: 66  VACILIVVLPAIFLISSVVREGAVFYGKLQSGE---INPAQYIEQLRTAFPAVQQALEHL 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +   L  +    I +     G       L+I  M+   FF  RDG  + + 
Sbjct: 123 EIDIDNLKKNALDLGMSSGKLIAQHLLNAGQNTFILLLNICLMLYLTFFLLRDGPQLLEL 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L  A  + +     +V R+T  G  +IA+ +G + G  +W+ G+P  +  GV+
Sbjct: 183 LIRALP-LGDARERLLFAKFGEVTRATIKGNLVIAVIQGSLGGLIFWVLGIPGALLWGVV 241

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            AI+++IP   P + +  V+IYL   G+      L  +G   + ++D  LRP LVG   K
Sbjct: 242 MAILSLIPAVGPALIWLPVAIYLFATGDFTKGAILVAFGGGVIGLIDNILRPILVGRDTK 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           LP        +GG+   G+ G  IGP++ AL    W   I  
Sbjct: 302 LPDYIVLLSTLGGLGLFGVNGFIIGPLVAALFMAFWGIFIRE 343


>gi|84497791|ref|ZP_00996588.1| integral membrane protein [Janibacter sp. HTCC2649]
 gi|84381291|gb|EAP97174.1| integral membrane protein [Janibacter sp. HTCC2649]
          Length = 404

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 107/334 (32%), Gaps = 16/334 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    +   L    +      P++ A+++     PI               A +  +
Sbjct: 61  RMIIIAAAVLGALWLFAYFSEVTVPIIIAMLLTALLMPITRFLAR--VIPRGAAAGLTVL 118

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + I  L F+      +  ++ ++V           R                    
Sbjct: 119 GTLAVIIGALSFVGSQFSSQFSDISTQVGQGIDEIRSWFRT-------------SFGLTD 165

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I       ++G   +   A++ G+            + ALFFF  DG  I   +
Sbjct: 166 SQVDGWIDKAREQLSSGGGSLGETAAQAGLTVTHLVAGFFISMFALFFFLYDGERIWAWV 225

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L              I    + +      ++A  + L +G    L GVP    + V+ 
Sbjct: 226 VRLFPRTSRDRVHSSGVIAWGQLSAFTRATILVAAVDALGIGIVAGLLGVPFASGVAVLV 285

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A IP     IS     +  L+      A  +         +    L+PFL+G  +++
Sbjct: 286 FFGAFIPVIGAAISGAVPVLLALVALGPVQALIMLGGVIAVQQLESHVLQPFLLGRAVRV 345

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L    G+ GGV   G+LG  I   L+A++  +
Sbjct: 346 HPLAVILGIAGGVVAAGILGALIAVPLVAVLNAV 379


>gi|227432355|ref|ZP_03914347.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227351876|gb|EEJ42110.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 390

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 101/324 (31%), Gaps = 5/324 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP++ + ++ +   PI                 +  + ++ +  V +  +      ++ +
Sbjct: 61  APIMISGVLYYLLSPIVGLLEKYVHLPRNLSIGVVLIVLLAIIGVVIAAIVMVLRNQVIQ 120

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +       +                +  +      S      +       T+G+  I  
Sbjct: 121 FIDNWPNYWKTSETFINETFASEQFKFIRDYLNHTNSDLNQNVLDWSKKYLTSGVAGISS 180

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           FAS    I +    +   +     +   DG   S  + S   +      + +   + K I
Sbjct: 181 FASILTSIGVTIVSTPFILY----YMLLDGHKFSSFVSSKFPNNSQLSVRYLLTEISKQI 236

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLL 270
                G   +A+   ++    Y + G+P  + L ++     +IP    I     V    L
Sbjct: 237 AQYIRGQLGVALAVMIMFSIGYTIIGLPYGILLALMAGFFNLIPYIGSIIAQVPVFTVAL 296

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ +
Sbjct: 297 IAGGPKMLILAIIVLAIEQPIEAHVISPKILGEALSIHPVTVIVVLLSSGHIFGVLGIVL 356

Query: 331 GPVLMALIAVIWKESIMAIKENKE 354
                A+  V         + N +
Sbjct: 357 AVPSYAVAKVFVTHIYDWWRANSD 380


>gi|325206005|gb|ADZ01458.1| putative membrane protein [Neisseria meningitidis M04-240196]
          Length = 356

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|294615250|ref|ZP_06695129.1| hypothetical protein EfmE1636_1354 [Enterococcus faecium E1636]
 gi|291591889|gb|EFF23519.1| hypothetical protein EfmE1636_1354 [Enterococcus faecium E1636]
          Length = 424

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 71  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 128

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 129 LGSVWLVPFLEEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 188

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  RD     Q + ++    
Sbjct: 189 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRDPQKFYQSVLAIVPPA 244

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 245 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 304

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 305 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 364

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 365 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 401


>gi|221197138|ref|ZP_03570185.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 gi|221203811|ref|ZP_03576829.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221175977|gb|EEE08406.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221183692|gb|EEE16092.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 350

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 137/344 (39%), Gaps = 3/344 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q    +++  + +   + L  FF  V    I+     P+     ++  +     A++   
Sbjct: 8   QKFFYFLLFAVTVGLCWVLAPFFGAVFWGTILAILFQPVQRWLAARFGKRRNLAALLTLT 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+PL+F+    + E+  +  ++  A  +     + +           L    L+
Sbjct: 68  LIILIVILPLVFVTATLVQEIAYVYQELKDAQPNYSKYFQDVIHALPTSIQHLLAKYGLT 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   ++                +     G     + +S   M+  +FF  RDG  I +++
Sbjct: 128 NIPGIQKKLTDGAAAISQFAAAQAL-SIGQNTFQFIVSFGVMLYMVFFLLRDGGEIGRRV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L   +   +      V+R+T  G   +A+ +G++ G  +W+ G+   V  G + 
Sbjct: 187 RRALP-LDEEHKNLLLAKFTTVVRATVKGNIAVALVQGILGGLIFWILGIQGVVLWGALM 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A ++++P     + +   ++Y L  G ++    L  +    + +VD  LRP LVG   K+
Sbjct: 246 AFLSLLPAIGASLVWVPAALYFLATGAVWKCVILVAFCVGVIGLVDNLLRPILVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P        +GG+   G+ G  IGP++ AL    W     A +E
Sbjct: 306 PDWVVLISTLGGMALFGINGFVIGPLVAALFMASWDIYARAEQE 349


>gi|71737762|ref|YP_275294.1| hypothetical protein PSPPH_3124 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257485456|ref|ZP_05639497.1| hypothetical protein PsyrptA_19480 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|71558315|gb|AAZ37526.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320323803|gb|EFW79887.1| hypothetical protein PsgB076_15967 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327942|gb|EFW83947.1| hypothetical protein PsgRace4_21198 [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881164|gb|EGH15313.1| hypothetical protein Pgy4_19969 [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330889643|gb|EGH22304.1| hypothetical protein PSYMO_12697 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989763|gb|EGH87866.1| hypothetical protein PLA107_32388 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010711|gb|EGH90767.1| hypothetical protein PSYTB_13666 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 354

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 150/343 (43%), Gaps = 4/343 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ET L  + ++  +++ + +  ++ L  F+  V  A+I+G    P+      K   S  
Sbjct: 1   MNETTLQYKTLIMLLVL-VTIAFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      + + I+P++ +    + E   L   V               D+      +
Sbjct: 60  LTSLCTLTICLVIAILPVIVISALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQA 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    +   + L+          G  ++   A  FG    D+ +S+  M+  L+FF RD
Sbjct: 120 LLDRLGMGDLEGLRDKITKGAMQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++A+ +G + G  +W   +PS
Sbjct: 179 GQELVRKIRTAFP-LGEQQKRRLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPS 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   VI A ++++P     I +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 ALLWAVIMAFLSLLPAVGAGIVWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LVG   K+P        +GG+   GL G  IGP++ AL    W
Sbjct: 298 LVGKDTKMPDYLILISTLGGMSVFGLNGFVIGPLVAALFISSW 340


>gi|262170855|ref|ZP_06038533.1| permease PerM [Vibrio mimicus MB-451]
 gi|261891931|gb|EEY37917.1| permease PerM [Vibrio mimicus MB-451]
          Length = 356

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 115/357 (32%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVVIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQQFITSLPERYPELAHLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVISNAKNKVLGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  I  G V    + +  +   
Sbjct: 181 QEMLRMASGVLP-RNRKLATKVWEEMNQQISNYIRGKVLEIIIVGTVSYITFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYVGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  +WK       E + +I
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLEDEPEARI 356


>gi|302537310|ref|ZP_07289652.1| conserved hypothetical protein [Streptomyces sp. C]
 gi|302446205|gb|EFL18021.1| conserved hypothetical protein [Streptomyces sp. C]
          Length = 426

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 102/354 (28%), Gaps = 18/354 (5%)

Query: 2   RETMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R     P+ ++  + +         + + L G    +L A  +     P  +   ++   
Sbjct: 63  RMPRWLPRAVVLVLGLVACFQLGSWAFHQLIGLLVNILIAFFLALAIEPAVARMAAR-GM 121

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +  + V       L  L      ++ ++V          I             
Sbjct: 122 RRGLATFLVFLGVFVAGAGFLAMLGSMLAGQIIDMVEGFPGYLDSVID------------ 169

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  +    S  +    L  +      +              L     ++ + +  F+F
Sbjct: 170 SINRTFHTDFSRLEIQDSLLRSQWLQKYVQNSASGVLDVSATVLGGLFKLLTIFLFSFYF 229

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG  + + L S+          +   I             ++A+  GL     + L  
Sbjct: 230 AADGPRLRRALCSVLPPAKQREVLRAWEIAVAKTGGYLYSRGLMALISGLAHYVLFVLLD 289

Query: 238 VPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V    AL V   +++  IP        A+ + +    + + A  +  +  I     +  L
Sbjct: 290 VAYAPALAVWVGLVSQFIPTIGTYLAGALPMLIAFAADPWYALYVLGFVVIYQQFENYVL 349

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +P L    + +     F  ++ G   +G +G  I    +A +       +   +
Sbjct: 350 QPKLTSRTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYE 403


>gi|255037761|ref|YP_003088382.1| hypothetical protein Dfer_4013 [Dyadobacter fermentans DSM 18053]
 gi|254950517|gb|ACT95217.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 389

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 118/336 (35%), Gaps = 16/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + +   +  LY L+    P+  ++++     P+ +    ++        + A +
Sbjct: 4   KLASTLVALIATVYILYILRETLIPLAFSILLAILLHPVCAWLELRRVPR-----IGAIL 58

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      ++ L Y   +++     ++    +    +               L  ++L+
Sbjct: 59  LSILALFTAIVILVYLVSMQVGSFAEELPRITEKAEAILD---------QTLTLGERYLN 109

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++ ++        N +     F     +       + + + + +FFF          +
Sbjct: 110 ISRTQQVSEAQKYLINALSEGRAFLLNTLVTTTGAISTFVLIPLYIFFFLLYRDFFRMFV 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 +       + + + +VI+S   G+ ++ +  G++      + G+P  +  G + 
Sbjct: 170 HKAIRRVPNEELNVLLKKIYEVIQSYLSGLFLVILIVGVLNSIGLLILGIPHAIFFGFLA 229

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + +IP    +  + +   L  +   + + A  +    +   F+    + P +VG  + 
Sbjct: 230 GFLILIPYIGILIGSVLPALLSIVTMDSPWYAVGVIGVMSFVQFLEGNFITPNIVGSKVS 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L  G +  GL GL +   + A++ VI 
Sbjct: 290 VNPLAAIVALFLGGQLWGLSGLILALPVTAILKVIL 325


>gi|299141364|ref|ZP_07034501.1| membrane protein [Prevotella oris C735]
 gi|298577324|gb|EFI49193.1| membrane protein [Prevotella oris C735]
          Length = 368

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 117/338 (34%), Gaps = 13/338 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYY 84
           +L     P   A  + +  +P+     +K          ++  + V+ +       +   
Sbjct: 29  YLSNVLLPFFIAWFMAYLLYPVVQFIENKLHIRVRAISILLTMLLVIAVIGGVFYLIIPP 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + +  +L + ++    H        + I   + A++   +     +            +
Sbjct: 89  MIEQFDKLQTVLMRWVHHTTHTNNLTNYISEWIQANQEHIERFFKSKDFGDT-----IKS 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +  F S+   + L   ++    ++ +FF   D   ++     +       +W+++ 
Sbjct: 144 AMPKLFSFVSQTASVILS-IIASAITLLYMFFILLDYEYLTTNWIRIFPKKNRPFWQELL 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + V + + +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +   
Sbjct: 203 QDVKRELNNYVRGQGLVALCMGIMFCIGFTIIGFPMAIGLGILIGILDLVPYLHTFALIP 262

Query: 265 VSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   +       +          L   +   I D  + P ++G  + L        L  
Sbjct: 263 TAFLAMLKAADTGQNFWIVFGLALLVFIVVQAITDFIVTPKIMGKAMGLNPAILLLSLSI 322

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               +G +GL I   L  L+   W+  I   ++ + K 
Sbjct: 323 WGALLGFIGLIIALPLTTLLIAYWQRYITKEEQGQNKP 360


>gi|281423598|ref|ZP_06254511.1| putative membrane protein [Prevotella oris F0302]
 gi|281402418|gb|EFB33249.1| putative membrane protein [Prevotella oris F0302]
          Length = 368

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 117/338 (34%), Gaps = 13/338 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYY 84
           +L     P   A  + +  +P+     +K          ++  + V+ +       +   
Sbjct: 29  YLSNVLLPFFIAWFMAYLLYPVVQFIENKLHIRVRAISILLTMLLVISVIGGVFYLIIPP 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + +  +L + ++    H        + I   + A++   +     +            +
Sbjct: 89  MIEQFDKLQTVLMRWVHHTTHTNNLTNYISEWIQANQEHIERFFKSKDFGDT-----IKS 143

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +  F S+   + L   ++    ++ +FF   D   ++     +       +W+++ 
Sbjct: 144 AMPKLFSFVSQTASVILS-IIASAITLLYMFFILLDYEYLTTNWIRIFPKKNRPFWQELL 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + V + + +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +   
Sbjct: 203 QDVKRELNNYVRGQGLVALCMGIMFCIGFTIIGFPMAIGLGILIGILDLVPYLHTFALIP 262

Query: 265 VSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   +       +          L   +   I D  + P ++G  + L        L  
Sbjct: 263 TAFLAMLKAADTGQNFWIVFGLALLVFIVVQAITDFIVTPKIMGKAMGLNPAILLLSLSI 322

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               +G +GL I   L  L+   W+  I   ++ + K 
Sbjct: 323 WGALLGFIGLIIALPLTTLLIAYWQRYITKEEQGQNKP 360


>gi|297157594|gb|ADI07306.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
          Length = 511

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 94/321 (29%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +             AL+I     P  +   ++          I  
Sbjct: 154 WRLLVLAGTVYVLMTVISAVELVVLSFTVALLITAMLEPTVTRLRNR-GVPRGLATAITF 212

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +S   +  + + F+ +  M    +L +KV                     W         
Sbjct: 213 ISGFIIMGLVIWFVVWQVMENADDLSNKVQAGIDDLRD------------WLLNSPFHVT 260

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         + +         + ++    I+  + +  F   DG  I   
Sbjct: 261 EKQINQIANNLRDAIGANTEELTSAGLEGVTVIVEVLTGILLAMFSTLFLLYDGPKIWAW 320

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                   + +   G  I+A+ + + +G   +   VP  V L V 
Sbjct: 321 FLKLVPAPAREGVAGAGPRAWTTLTAYVRGTVIVALIDAIFIGVGIFFLDVPMAVPLAVF 380

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   ++ A  + +       I    L+PF++G  ++
Sbjct: 381 IFLFAFIPLVGAVVSGALAVVVALVTQGVWTAAMVLVVVLAVQQIEGHILQPFILGRAVR 440

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 441 VHPLAVVLSVAAGSLIGGIGG 461


>gi|261253578|ref|ZP_05946151.1| permease PerM [Vibrio orientalis CIP 102891]
 gi|260936969|gb|EEX92958.1| permease PerM [Vibrio orientalis CIP 102891]
          Length = 354

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 112/352 (31%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +           +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVVQLS-RVGIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  + L IV +  L      ++  L++ +             L      +   +
Sbjct: 69  AVILVILGFISLMIVAIFGLVPTIWQQVGNLINDIPTMYVGLQGFISELPHRYPELENFQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESLVTNAKNQVIGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMIEMASGMLP-RNRRLANKVWHEMNEQISNYIRGKVMEILIVGSVSYITFAILDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V      +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLIAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G  G+F    L  L+  +W       +E
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHEEE 351


>gi|168187612|ref|ZP_02622247.1| permease [Clostridium botulinum C str. Eklund]
 gi|169294517|gb|EDS76650.1| permease [Clostridium botulinum C str. Eklund]
          Length = 368

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 112/336 (33%), Gaps = 1/336 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    L  +     P   A  I +   P+   F  K      F  +I  + ++    + +
Sbjct: 30  VFASGLSIVISILTPFFWAFGIAYILNPLMLYFEKKFNLKRCFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  + +L++ + +             +       + L         ++     
Sbjct: 90  TIISPAIINNVGKLLNDMPIYVIKTQAWFYTTINKFNLSNNTTLIQFANKGLTNITTTLT 149

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             LK+  ++     A  F   FL      I  +  L        +    L  + +     
Sbjct: 150 DSLKS-FLNVALSNAIDFTSSFLKMIFGFIISVYILKDKESFQKNAKNFLYCVFKKESVD 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +      V  +     +G +I ++  G++      +   P  + + ++  I  MIP   
Sbjct: 209 SFLTFGNEVNIIFSQYIIGKSIDSLIIGILCAIGLAILQTPYVLLISLLVGITNMIPYFG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ + +  +   A  + L+  +        L P ++G  + +        ++ 
Sbjct: 269 PFIGMIPAVLITVFYSPIKALWVLLFILVLQQFDGWVLGPKILGDKVGVSPFWIILAILV 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  T G+LG+F+G  ++A+I  + +  I    ++K 
Sbjct: 329 GGGTFGVLGMFLGVPIIAIIKTLLQRFITRRLKSKN 364


>gi|161870063|ref|YP_001599232.1| transporter, putative [Neisseria meningitidis 053442]
 gi|161595616|gb|ABX73276.1| transporter, putative [Neisseria meningitidis 053442]
          Length = 356

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYMEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|163790574|ref|ZP_02185003.1| Putative transport protein [Carnobacterium sp. AT7]
 gi|159874177|gb|EDP68252.1| Putative transport protein [Carnobacterium sp. AT7]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 110/317 (34%), Gaps = 7/317 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ A  + +   P+      K +    +  +I  +  +   +   + +    
Sbjct: 39  FVSTLFTPIIIAGFLYYLLNPLIGQLE-KIKIKRKYGIIIVFLLFLGFIVFLAISVIPNL 97

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ +L++ +    +        L   P       L    L        LS   +    
Sbjct: 98  IEQLGQLITSIPSVLKKLEEYSNELLQKPM------LKNFDLEKSIGKMDLSIENIANTI 151

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +            +  + I  + I LF+ ++DG      +       +     ++  
Sbjct: 152 FTTLTASVGSLIGALANTTIVIFTVPIILFYMFKDGKHFRPAVAKFFPKDYRGQMIELLG 211

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + I S   G  ++ +   +     Y + G+P  + LG+I  +  +IP   P    A 
Sbjct: 212 QMNETIASYISGQALVCLFVAVFTYLGYMITGMPYGLLLGIIAGVTNIIPYIGPYIGAAP 271

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + L   +   I    + P ++G  + +  L     L+      G+
Sbjct: 272 AVIIALTISPTQALLVVLVVLVVQQIDGNFISPNVIGKTLSIHPLTIIIILLVAGNIAGI 331

Query: 326 LGLFIGPVLMALIAVIW 342
           LG+ +G    A++  I 
Sbjct: 332 LGMILGVPTYAVVKTIV 348


>gi|182417136|ref|ZP_02948509.1| permease [Clostridium butyricum 5521]
 gi|237667128|ref|ZP_04527112.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378978|gb|EDT76484.1| permease [Clostridium butyricum 5521]
 gi|237655476|gb|EEP53032.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 374

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 101/330 (30%), Gaps = 2/330 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              +P + AL+  +   P+   F  K     +F      + ++ +  V L F     +  
Sbjct: 41  SILSPFIYALVCAYVLNPVVKCFERKFNIKRSFAIAATYLILVGIVFVGLFFTIPSIIDS 100

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  +  ++         +      +        +    L             +  + +  
Sbjct: 101 ILNITGEIPNYMVKVQELIN--MSLSNERINELITQSGLLSSIQNIATQIGNVSMDLLQD 158

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
              +        ++  L  +  I  L                  +    +      R   
Sbjct: 159 FALYLLSLTSNLVNIVLGFLISIYVLIEKDNIAKMAKTLTYMSLKEKNGSRLVSFIRTYN 218

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           K+I        I ++  G +      +  VP    L +I  I  MIP   P+    +S  
Sbjct: 219 KMIGMYVGIKAIDSMIIGSLALIGLTILKVPYAPLLALIVGITNMIPYFGPLVGIVISFV 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +  +   A  + +            L P L+G  + +  L   FG+  G   +G +G+
Sbjct: 279 VTLFSSPLQAVVVAMLLFALQQFDAWYLEPKLIGKKVGVSPLGIIFGVTLGGGILGPVGM 338

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +G   MA   + + + +   KE+ +++  
Sbjct: 339 ILGSPTMATARIYYNKLVDRFKESNKELVE 368


>gi|312868423|ref|ZP_07728623.1| putative membrane protein [Streptococcus parasanguinis F0405]
 gi|311096168|gb|EFQ54412.1| putative membrane protein [Streptococcus parasanguinis F0405]
          Length = 375

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L A  + + + PI        +    F  +I  V +  L  + +
Sbjct: 30  LISPFVSVLNTILLPFLIAGFLYYITNPIVELLEKHLKIKRVFGILITLVLLFGLIGLGI 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +L    + ++  L++           + R LS  P     +      +        LS 
Sbjct: 90  FYLLPILINQLTSLINSTQGLYWEVQSLVRKLSTNPLFQNVN------IQSTIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++    +I   I L +F  DG  +   L+         
Sbjct: 144 MDILQNLLNSVTNSLGSVVNTIVNTVFILIMTPIFLVYFLIDGKKLLPMLERTILRNDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   +   + + +     G++I A+  G +    Y   G+   +   + + +  +IP   
Sbjct: 204 HISSLLVSLNETVSRYISGISIDALIIGTLAYIGYSFIGLKYALVFAIFSGLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I      ++       ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PTIGLIPMIITYAFTDVDMMIKAVIYMLIIQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +   + ++   I K  +     ++
Sbjct: 324 SSNIYGIIGMVVAIPVYSIGKEIVKFLVNLYDNHR 358


>gi|306821732|ref|ZP_07455328.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550201|gb|EFM38196.1| conserved hypothetical protein [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 450

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/339 (10%), Positives = 103/339 (30%), Gaps = 8/339 (2%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCLFIVP 77
           ++ +   F P ++ + I F                   + S  F   +  ++ + +  + 
Sbjct: 33  IWRIVTLFTPFITGICIAFILNIPMQKIEKTINKLFGWKSSRAFSLFLTIIAFIMVLTLI 92

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG--MWASELWTKHLSHPQSLKI 135
              +    +    E+ + +     + +   +   +            + K  S+      
Sbjct: 93  FYMIIPEIVNSFVEIRNGLPTVVDNFVKFMKTPDNHIIKTMSNIGLDFDKMYSNVTDFFK 152

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  +N +  I    +      ++  L +IF +  L             L ++    
Sbjct: 153 NFSLLDASNALQSIFSATTNVFSSVMNVFLGLIFAVYILSQKEVLLSQGHSLLKAIFPDK 212

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                    R+V         G    A+    +  ++  L  +P  V++  +  + +++P
Sbjct: 213 RTKKIVSFLRLVSSSFSKFIAGQGTEAVILCFLFLASMTLFHIPKAVSIATMIGLFSLVP 272

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       +  ++      +    +   +   I    + P +VG  + LP +     
Sbjct: 273 IVGPFIAATYGVLSILIVAPIKSLWFVVLFLVLQQIEGNLIYPRVVGKSVGLPGVWVLLA 332

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  G    G+ G+ +    M+++  +    + +    K+
Sbjct: 333 ITVGGNFAGITGMIMAVPTMSIVYNLVTSFVRSRNVRKK 371


>gi|78062585|ref|YP_372493.1| hypothetical protein Bcep18194_B1735 [Burkholderia sp. 383]
 gi|77970470|gb|ABB11849.1| protein of unknown function UPF0118 [Burkholderia sp. 383]
          Length = 356

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 162/344 (47%), Gaps = 5/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              Q     +   +++++L+ ++ F   +  A +I    WP+   F          T +A
Sbjct: 16  RTQQVSRAVLYAALLVIALWVIRDFIPAIAWACVIAIAMWPMLKRFESHRLFRNRPTLIA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+ T ++  L ++P+       + +  +L   +     +GIPVP  +  +P G      W
Sbjct: 76  VVITAAISLLVVLPVAVAATQAIGQAHDLREWLRTVQDNGIPVPDVIGRLPYGAAQITEW 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + + +     +    F  +FG       L   FM++ LF   R G  
Sbjct: 136 WQANLGHP---LHAASAMHGVNSEKFLAFGRQFGTKLAHALLEFGFMLVTLFVILRAGHK 192

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F     ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    
Sbjct: 193 LSGALLQGARRAFGRSGAELIERMVAAVFGTVTGLVVVGLGEGALLGIAYALAGVPHAAL 252

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++TAI AM+P  AP+ F   +++L ++G    A  + + G + +F+ +  +RP L+G 
Sbjct: 253 LGLVTAIAAMLPFCAPVVFCGAALWLFVQGATMWAIVVAVLGFVVVFVAEHFVRPVLIGS 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             +LPFL   FG++GG  T GL+GLF+GP LM ++ ++W E I 
Sbjct: 313 SARLPFLLVLFGILGGAETFGLIGLFVGPALMTVLTMLWAEWIA 356


>gi|328912764|gb|AEB64360.1| putative permease [Bacillus amyloliquefaciens LL3]
          Length = 353

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 112/330 (33%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K  F P+  A+ I +   PI      K     T   ++            +    
Sbjct: 35  IWLVIKSLFIPIFIAVFIAYLLLPITEWLHGK-GMPRTLSLLLIYFLFFGGIGWGVYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++++L   +    ++   + R L +           T H       ++       
Sbjct: 94  PVLIEQLQDLSESIPGLAENYNSMLRHLHN----------HTDHWPDGMHHRMDKMIQQT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +        R      DY L    +   +F+  +D  ++ + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVFDYILIAATIPFLVFYMVKDIDAMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL+ G ++W+ G+P  + LG++  I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGLIAGCSFWMFGLPYPLILGLVIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPALLLALALSAKAVIIVIITIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G+ G+ +     A++ V     +    E+
Sbjct: 324 AGIPGMILAVPAAAVLKVTAIHFLRIRTEH 353


>gi|190573154|ref|YP_001970999.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011076|emb|CAQ44685.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 389

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 128/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +   +I   ++ L     P + AL + +   P+     +    S     V+   
Sbjct: 14  RRLKYILFAGLIGWVVWLLAPILTPFVLALALAWLGDPLVDRIEA-TGRSRMTGVVLVFA 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ + +  LL L      ++  L++    A      +              E+      
Sbjct: 73  AMVLVIVALLLVLVPMIERQITTLIAVAPQAQAW---LMEKGIPWFEQKTGLEVMQWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S              + SR G   + + ++I+ + I  F+F RD   + +++
Sbjct: 130 DRLIEWVRSHWQQAGGFATTFMGYVSRSGFAMVTWVVNILLLPILAFYFLRDWDKLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+           ++R   +V+ +   G  ++ +  G++  S   L G+   + +G+I 
Sbjct: 190 ASVIPRNHIGTISALARESNEVLGAFIRGQFLVMLALGVIYASGLSLVGLKLGLLIGLIA 249

Query: 249 AIMAMIPGGAP----ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP        +     ++      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGVLMAVIAALVQAQGFDLKLLILVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +    ++++
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVTNVLLRYAHQRYRQSE 358


>gi|91223519|ref|ZP_01258784.1| permease PerM [Vibrio alginolyticus 12G01]
 gi|91191605|gb|EAS77869.1| permease PerM [Vibrio alginolyticus 12G01]
          Length = 357

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 113/358 (31%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +           +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKMC-RIGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  +  + L ++ L  L      ++  L++ +             L +    +   E
Sbjct: 69  SVIIVILVFVGLMLIALFGLVPTIWTQVGNLINDIPNMYNGLQKFIVTLPERHPELANLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETVVTNAKNQALGLGESVVKGSLASLVSIAT--------LAVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + L  +   
Sbjct: 181 EEMLRIASGILP-KNRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFALLDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPPFYWLLLAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    + L  +     ++      G  G+F    L  L+  +W       +    +  
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSTEENEPVEQE 357


>gi|293557070|ref|ZP_06675629.1| putative permease [Enterococcus faecium E1039]
 gi|291600758|gb|EFF31051.1| putative permease [Enterococcus faecium E1039]
          Length = 424

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 71  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 128

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 129 LGSVWLVPFLKEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 188

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  RD     Q + ++    
Sbjct: 189 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRDPQKFYQSVLAIVPPA 244

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 245 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 304

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 305 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 364

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 365 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 401


>gi|229005363|ref|ZP_04163077.1| hypothetical protein bmyco0002_23000 [Bacillus mycoides Rock1-4]
 gi|228755893|gb|EEM05224.1| hypothetical protein bmyco0002_23000 [Bacillus mycoides Rock1-4]
          Length = 348

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 118/342 (34%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L A+ + F   P+     +K +   +   ++  V ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIAMFLYFIFNPVLVFLEAK-KVPRSLAILLLYVFIITLAA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W +               
Sbjct: 71  VAIGVVVPTISQQLMDLVKNMPTYIKEGKVYIQELSHHRLFEWLATQ----DYVSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         + I   A+    I  +  L +  +   LF+ ++DG +   +  S     
Sbjct: 127 KNAIEYLKEIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETGETLSAYIQGQALVCLFVGAFTFIGYVIMDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQALWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  +    
Sbjct: 307 ILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKMKRNNRK 348


>gi|213970022|ref|ZP_03398154.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301381377|ref|ZP_07229795.1| hypothetical protein PsyrptM_02033 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062148|ref|ZP_07253689.1| hypothetical protein PsyrptK_19351 [Pseudomonas syringae pv. tomato
           K40]
 gi|302130458|ref|ZP_07256448.1| hypothetical protein PsyrptN_03622 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213925126|gb|EEB58689.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|330875760|gb|EGH09909.1| hypothetical protein PSYMP_11317 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965579|gb|EGH65839.1| hypothetical protein PSYAC_13156 [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331017284|gb|EGH97340.1| hypothetical protein PLA106_14651 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 354

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 137/322 (42%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K        ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWPRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               ++      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKNLLPHSIQALLDRLGMGDLEGLRDKITKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVALYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLIAALFISSW 340


>gi|294619528|ref|ZP_06698965.1| domain of unknown function, putative [Enterococcus faecium E1679]
 gi|314939645|ref|ZP_07846870.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314943988|ref|ZP_07850689.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314953874|ref|ZP_07856737.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314993533|ref|ZP_07858889.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314997046|ref|ZP_07862036.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|291594219|gb|EFF25656.1| domain of unknown function, putative [Enterococcus faecium E1679]
 gi|313588817|gb|EFR67662.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313591970|gb|EFR70815.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594209|gb|EFR73054.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313597412|gb|EFR76257.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313641054|gb|EFS05634.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
          Length = 424

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 71  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 128

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 129 LGSVWLVPFLEEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 188

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  RD     Q + ++    
Sbjct: 189 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRDPQKFYQSVLAIVPPA 244

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 245 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 304

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 305 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 364

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 365 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 401


>gi|121634907|ref|YP_975152.1| putative integral membrane protein [Neisseria meningitidis FAM18]
 gi|269214955|ref|ZP_05987479.2| putative membrane protein [Neisseria lactamica ATCC 23970]
 gi|304387523|ref|ZP_07369712.1| possible permease [Neisseria meningitidis ATCC 13091]
 gi|120866613|emb|CAM10364.1| putative integral membrane protein [Neisseria meningitidis FAM18]
 gi|269208647|gb|EEZ75102.1| putative membrane protein [Neisseria lactamica ATCC 23970]
 gi|304338410|gb|EFM04531.1| possible permease [Neisseria meningitidis ATCC 13091]
 gi|325132218|gb|EGC54912.1| putative membrane protein [Neisseria meningitidis M6190]
 gi|325138201|gb|EGC60771.1| putative membrane protein [Neisseria meningitidis ES14902]
          Length = 356

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|209516308|ref|ZP_03265165.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503244|gb|EEA03243.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 364

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 96/347 (27%), Positives = 171/347 (49%), Gaps = 5/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESST 60
           E +   +     + + ++L++L+ ++ F   V  A ++    WP+             +T
Sbjct: 21  ERLKKQKAASAALYIGLVLLALWVVRDFIVVVAWAGVVSIALWPLLHKVAGSRWFRGRTT 80

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            LA + T+ +  L ++P+       + E  EL        ++GI VP +++ +P G+   
Sbjct: 81  VLATVFTLVIAVLVLLPVALGLAQALREAHELSEWFRGVQENGIAVPDFVNRLPFGVPQI 140

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W +      +  +     +K    + +     +FG   L   +   FM++ LF  ++ 
Sbjct: 141 TAWWQA---NLAQPLRDSAAMKGLHSETVMTLGRQFGARALHAAMVFAFMLVTLFVIFQA 197

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S  L       F      +   +   +R T  G+ ++  GEG++LG AY + GVP 
Sbjct: 198 GPRLSGSLLKAARRGFGDSGADLVEQMATAVRGTVSGLIVVGAGEGVLLGFAYLVTGVPH 257

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG +TAI AM+P  API+F   +++LL++G++  A  L ++GAI +FI +  +RP L
Sbjct: 258 AALLGFVTAIAAMLPFCAPITFGLAALWLLVQGSVVPAAGLAVFGAIVVFIAEHFVRPVL 317

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W   + 
Sbjct: 318 IGNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTALVE 364


>gi|327459002|gb|EGF05350.1| permease [Streptococcus sanguinis SK1057]
          Length = 365

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 111/338 (32%), Gaps = 7/338 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRIPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + G    GL+G+     + A+I  + +E ++  +E  E
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEERNE 360


>gi|28870542|ref|NP_793161.1| hypothetical protein PSPTO_3378 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28853790|gb|AAO56856.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 354

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 137/322 (42%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K        ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWPRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               ++      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKNLLPHSIQALLDRLGMGDLEGLRDKITKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVALYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFLIGPLIAALFISSW 340


>gi|19745999|ref|NP_607135.1| hypothetical protein spyM18_0995 [Streptococcus pyogenes MGAS8232]
 gi|19748162|gb|AAL97634.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
          Length = 393

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVDKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +    F    + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|29375296|ref|NP_814450.1| hypothetical protein EF0699 [Enterococcus faecalis V583]
 gi|255971159|ref|ZP_05421745.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255973783|ref|ZP_05424369.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256617587|ref|ZP_05474433.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256761470|ref|ZP_05502050.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256854440|ref|ZP_05559804.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256957429|ref|ZP_05561600.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256964462|ref|ZP_05568633.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257077575|ref|ZP_05571936.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257080949|ref|ZP_05575310.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257083628|ref|ZP_05577989.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257086060|ref|ZP_05580421.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257089128|ref|ZP_05583489.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415270|ref|ZP_05592264.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257418314|ref|ZP_05595308.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257420962|ref|ZP_05597952.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294780483|ref|ZP_06745848.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300861769|ref|ZP_07107849.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29342756|gb|AAO80520.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|255962177|gb|EET94653.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255966655|gb|EET97277.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256597114|gb|EEU16290.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256682721|gb|EEU22416.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256710000|gb|EEU25044.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|256947925|gb|EEU64557.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256954958|gb|EEU71590.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256985605|gb|EEU72907.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256988979|gb|EEU76281.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256991658|gb|EEU78960.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256994090|gb|EEU81392.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256997940|gb|EEU84460.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257157098|gb|EEU87058.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257160142|gb|EEU90102.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257162786|gb|EEU92746.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294452482|gb|EFG20919.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300848294|gb|EFK76051.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
          Length = 381

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 32  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 91  LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 145 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRK 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 205 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYL 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      A    L   +   +    + P ++G  +K+  L     L+
Sbjct: 265 GPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG+F+G    A+   I    I  +K  + +  +N
Sbjct: 325 VAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 366


>gi|322372869|ref|ZP_08047405.1| membrane protein [Streptococcus sp. C150]
 gi|321277911|gb|EFX54980.1| membrane protein [Streptococcus sp. C150]
          Length = 392

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 124/359 (34%), Gaps = 19/359 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIYSSF 51
           LN Q ++ ++I+ +I +++               FL     P++ + ++ +   P+    
Sbjct: 19  LNNQAVVAFLILLLIGLTVLIFTKISPIFSPVIDFLTIIMLPLVISTLLYYLIKPLV-LL 77

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + K   S T   ++    +  L ++ +         ++  L+                  
Sbjct: 78  VEKTGLSRTMSILVIYAILALLLVLGISTAIPSLQNQILILIRNTPSYIARANSEAERWL 137

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           ++P            LS   +  +       ++ + ++  FAS    + +   L      
Sbjct: 138 NLPFLSNYRGDLEAMLSDFSARMVNYAENFSSSALTWVGTFASTVARVTVAIIL----AP 193

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RD   + Q   S+    F     ++   +   +     G   +AI   ++   
Sbjct: 194 FILFYLLRDSQKMKQGFVSVLPTRFRETTVRMLSDINNQLEGYVQGQVTVAIVVAIMFCI 253

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
            + + G+   V  G++   + M+P           + + +         + +   IE  I
Sbjct: 254 MFKIVGLRYGVTFGIMAGFLNMVPYLGSFLAMVPVVIMGLVQGPAMLIKVLIIFVIEQTI 313

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ KE     +
Sbjct: 314 EGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVVKEIFDWYR 372


>gi|229133792|ref|ZP_04262617.1| hypothetical protein bcere0014_27100 [Bacillus cereus BDRD-ST196]
 gi|228649651|gb|EEL05661.1| hypothetical protein bcere0014_27100 [Bacillus cereus BDRD-ST196]
          Length = 348

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 121/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPLLVFLENK-KVPRGLAILLLYLFIITLTG 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VAIGVVVPTISQQLMDLVKNMPTYIKEGKIYIQDLSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         + I   A+    I  +  L I  +   LF+ ++DG +   +  S+    
Sbjct: 127 KNAIEYLKGIPNTITSSATALFGIITNVALVIFTVPFILFYMFKDGHAFPGKAVSVLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G    + Y + G+P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCMFIGAFTFTGYLIIGLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIIGLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  + K  
Sbjct: 307 ILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKTKRSKRK 348


>gi|194334809|ref|YP_002016669.1| hypothetical protein Paes_2012 [Prosthecochloris aestuarii DSM 271]
 gi|194312627|gb|ACF47022.1| protein of unknown function UPF0118 [Prosthecochloris aestuarii DSM
           271]
          Length = 363

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/341 (22%), Positives = 135/341 (39%), Gaps = 6/341 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I  +    +  F   +L A I    + P+   F    +   +  + +A VS+  + I PL
Sbjct: 18  ISAIFFSMIYDFLMVILIAAIFSSLALPVNRFFERLFKGKKSLSSALALVSISLIGIFPL 77

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L      +   +        +  +  P    D+   +   E     ++    L +   
Sbjct: 78  FALMGIVAAQAVRISRSAGPWIEKRLEEPTAFHDLFLTLPFYE----TINAYSDLILQRL 133

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             + +    F+    S F +  +         +  +FFF RDG  + QQ       L  +
Sbjct: 134 GEMVSKTGTFLFENISSFTLSTVHTLFLFFVFLYTMFFFLRDGRDMLQQALYYMP-LNQS 192

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++      V R+T  G  +I I +G + G A+ +AG+ S V  G I  ++++IP   
Sbjct: 193 DQSRMLDKFTSVTRATIRGTFVIGIIQGTLAGLAFQVAGIESAVFWGAIMTVLSVIPVVG 252

Query: 259 -PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             + +    +YL   G    AT L ++  I +  +D  LRP LVG   ++  L  FFG +
Sbjct: 253 SGLVWVPAVLYLYATGENVAATGLLIFCGILVSSIDNILRPVLVGRDTRMHELLIFFGTI 312

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GG+   G+ G  +GP++ AL   +W+      KE       
Sbjct: 313 GGIGLFGIAGFIVGPIIAALFITVWEIYGETFKEYLNDAKQ 353


>gi|149202228|ref|ZP_01879201.1| membrane protein [Roseovarius sp. TM1035]
 gi|149144326|gb|EDM32357.1| membrane protein [Roseovarius sp. TM1035]
          Length = 347

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 110/339 (32%), Gaps = 14/339 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +  V L+FL     P +    I +   P+      +   S     V+ T+  +  F+V 
Sbjct: 9   AVFFVLLWFLGDVILPFVLGGAIAYFLDPVADRLE-RMGLSRAASVVVITLIAILAFVVI 67

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +L +    + +   L +      +                              +  +LS
Sbjct: 68  VLLIVPSLVNQAVALFNVAPELARDLHGFLSTHFPALFEP----------DSALNKTLLS 117

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                      +           ++  + ++ + +   +   D  ++  ++D L      
Sbjct: 118 LGETIRERGGQLLETLLSSAASMVNILILLVIVPVVAVYLLYDWDNMIAEIDHLLPRDHA 177

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              + ++  +   + S   GM  + +  G     A  L G+   + +G I  ++  IP  
Sbjct: 178 PVIRSLAGQIDNTLASFIRGMGTVCLILGTYYAVALMLVGLQFGLVVGAIAGLITFIPYV 237

Query: 258 APISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             I    +++ L      G+  +   +         I    L P LVG  + L  +   F
Sbjct: 238 GSIVGGVLAVGLALFQFWGDWVSVGLVAAVFVSGQVIEGNFLTPKLVGSSVGLHPVWLIF 297

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L       G +G+ +   + A + VI + ++   ++++
Sbjct: 298 ALSAFGALFGFVGMLVAVPVAASLGVIARFALEQYRDSR 336


>gi|89100980|ref|ZP_01173825.1| hypothetical protein B14911_01700 [Bacillus sp. NRRL B-14911]
 gi|89084316|gb|EAR63472.1| hypothetical protein B14911_01700 [Bacillus sp. NRRL B-14911]
          Length = 372

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 102/318 (32%), Gaps = 11/318 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  L     P  +A  I +   P+                +I            L    
Sbjct: 50  VIRTLFIIIFPFAAAAFITYLLHPVVERLHE-AGLHRGLAVIIIYTLFFGGTGYALYKGL 108

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++++++L                            +  T     P  L+I       
Sbjct: 109 PAIIVQIRDLAEHAPQLADQYREWL----------LLLQSKTSQWPEPVQLRIDEGIQSL 158

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +D +   A  F    L++ L +I +    F+  +D   + + +  L    +      
Sbjct: 159 EASLDRLLSRAMAFAGAILNFALILIIIPFISFYMLKDFLLMKKAVWYLTPKKWRESGSL 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R   K + S   G  ++    G +    +W+AG+   + LG I     +IP   PI  
Sbjct: 219 FLRDADKSLGSYIRGQLLVCAVIGALSSLFFWIAGIKYPLLLGAIIGATNVIPYFGPIIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    ++       +   +  F+    L P +VG  + +  L   F L+ G   
Sbjct: 279 AVPAVLIASTMSVKMIIFAAVIVMVLQFLEGNILSPLIVGKSLHMHPLLIMFSLLAGGEI 338

Query: 323 MGLLGLFIGPVLMALIAV 340
            G+ GL +   ++A++ V
Sbjct: 339 AGVAGLILAVPVLAVLKV 356


>gi|121602761|ref|YP_989062.1| hypothetical protein BARBAKC583_0766 [Bartonella bacilliformis
           KC583]
 gi|120614938|gb|ABM45539.1| putative membrane protein [Bartonella bacilliformis KC583]
          Length = 404

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/329 (13%), Positives = 112/329 (34%), Gaps = 11/329 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++ Q +     +   ++ ++       P ++ +++ +   P+             F  ++
Sbjct: 46  MSKQILFWLGALISFILFMFIFGSILFPFIAGIVLAYFLNPVIELLEE-IGIHRVFGTIL 104

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWT 124
            T+ ++ +F+V L  L      ++++ VS  +              +      +     +
Sbjct: 105 ITLFIIVIFVVSLTILIPIISWQIQQFVSNGLPTYMNRIQTFFVEYNFDWIRHYFGSDPS 164

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +  S+  +L   S     ++ I        R G   ++    ++ + +  F+   D   +
Sbjct: 165 ELQSNITALLGQS-----SDFITSFLNSLLRSGRSIVNIVSLLVVVPVVAFYMLLDWQRM 219

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +DS       A  + I   + + +     G   + +  G        + G+   + +
Sbjct: 220 IETVDSWIPRDHLATVRSIFHEMDRAVAGFIRGQGTVCLVLGGYYAIGLTITGLNFGLVI 279

Query: 245 GVITAIMAMIPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           G++  +++ IP    +        VS       +      + +   I  FI    L+P L
Sbjct: 280 GMLVGLISFIPYIGTMIGFVLSVGVSWVQFYPDDWGRIVIVMVVFFIGQFIEACILQPKL 339

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           VG  + L  +   F L       G  G+ 
Sbjct: 340 VGSSVGLHPVWLMFALFAFGSLFGFTGML 368


>gi|328554823|gb|AEB25315.1| integral inner membrane protein [Bacillus amyloliquefaciens TA208]
 gi|328913184|gb|AEB64780.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens LL3]
          Length = 368

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 109/332 (32%), Gaps = 6/332 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI      F+   F P+L + I+ F   PI      K     T   ++  +  + L  
Sbjct: 26  VSFIFQPFFGFITTLFFPILISGILFFIFNPIVRLLEKK--IPRTLAILLIYLVFIGLIA 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +      ++  L +           +   LS      W                 
Sbjct: 84  FMFTAIGPIVASQVTGLFNNFPDYINQIQSLTTQLSHSKWFTW----MMTQDYVSIEKIQ 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S T    +    I    S    +  +  L +I +   LF+  +DG         +    
Sbjct: 140 QSLTGFLQSLPQNITASLSAVFGVVTNITLVVITVPFILFYMLKDGRRFPLLAVKILPSS 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           + A  +KI   +   + + F G  +I +  G      YW+ G+P  + LG++ A+  +IP
Sbjct: 200 YRAEGRKIFNDLYVTLAAYFQGQLLICLFVGTACFIGYWIIGLPYALILGMVIAVTNIIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +    +   A    +   +   +    L P ++G  +    L     
Sbjct: 260 YLGPFLGAAPAVIIAFMDSPAKALFAVIVVVVVQQLDGNLLSPLVIGKRLNTHPLTIILL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           LVG     G+L + +   + A++       + 
Sbjct: 320 LVGAGSFGGILAMILAVPVYAVLKAFVLNIVR 351


>gi|218135102|ref|ZP_03463906.1| hypothetical protein BACPEC_03007 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990487|gb|EEC56498.1| hypothetical protein BACPEC_03007 [Bacteroides pectinophilus ATCC
           43243]
          Length = 442

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/366 (11%), Positives = 104/366 (28%), Gaps = 27/366 (7%)

Query: 10  GIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYSSFI----SKK 55
            I+ + I  ++   +Y           L     P +  +++ +   PI            
Sbjct: 46  AIVTFFICVLLFFIVYRYSGFAKIWDKLMSIMQPFIIGIVLAYIVNPIMMVVEGIVMRLI 105

Query: 56  EES-----------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                              V A +  + + +  L  +    +  ++ +V  +       +
Sbjct: 106 GPKVKNPKTAEKTARGIGIVCALMLFILIIVFLLELIIPQIISSVQGVVGSLPDEISSFV 165

Query: 105 PVPRWLS--DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                ++  +        +                        I  I         I ++
Sbjct: 166 AWVTEVTRGNEQISNMVEKGIISGTDFIGKWVQDHLLPQANTYIVSITTGVVNVARIVVN 225

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             + II  +  L    R      + + ++ +        + +R   ++     +G  I +
Sbjct: 226 VFVGIIISVYVLASKERFIGQSKKMIYTMFDAKRGNIIIRTARKSNEIFGGFIMGKIIDS 285

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G++      +  +P    + VI  +  +IP   P      S  ++   N        
Sbjct: 286 LIIGVLCYVGLLILRMPYPTLVSVIVGVTNVIPFFGPYIGAVPSFIIITLANPIKGLYFL 345

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  +   +    + P ++G    L      F ++      G  G+ +G    A+I  I 
Sbjct: 346 VFILVLQQLDGNVIGPKILGDSTGLSPFWVVFAIIAAGGIFGFAGMLLGVPTFAVIYYIA 405

Query: 343 KESIMA 348
            E +  
Sbjct: 406 GEIVSH 411


>gi|28899050|ref|NP_798655.1| permease PerM [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837005|ref|ZP_01989672.1| permease PerM [Vibrio parahaemolyticus AQ3810]
 gi|260365204|ref|ZP_05777761.1| permease PerM [Vibrio parahaemolyticus K5030]
 gi|260876868|ref|ZP_05889223.1| permease PerM [Vibrio parahaemolyticus AN-5034]
 gi|260897349|ref|ZP_05905845.1| permease PerM [Vibrio parahaemolyticus Peru-466]
 gi|260899824|ref|ZP_05908219.1| permease PerM [Vibrio parahaemolyticus AQ4037]
 gi|28807269|dbj|BAC60539.1| permease PerM [Vibrio parahaemolyticus RIMD 2210633]
 gi|149749778|gb|EDM60523.1| permease PerM [Vibrio parahaemolyticus AQ3810]
 gi|308088242|gb|EFO37937.1| permease PerM [Vibrio parahaemolyticus Peru-466]
 gi|308091358|gb|EFO41053.1| permease PerM [Vibrio parahaemolyticus AN-5034]
 gi|308107352|gb|EFO44892.1| permease PerM [Vibrio parahaemolyticus AQ4037]
 gi|308115433|gb|EFO52973.1| permease PerM [Vibrio parahaemolyticus K5030]
 gi|328474413|gb|EGF45218.1| permease PerM [Vibrio parahaemolyticus 10329]
          Length = 356

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 112/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +           +     T 
Sbjct: 10  QRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKLS-RMGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  +  + + ++ L  L      ++  L++ +             L +    +   +
Sbjct: 69  SVIIVLLIFISIMLIALFGLVPTIWTQVGNLINDIPNMYNGLQKFIMTLPERHPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETVVTNAKNQALGLGESVVKGSLASLVSIAT--------LAVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMLRMASGILP-KNRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGMTPQFYWLLLAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L  L+  +W       +   
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSTEESEP 353


>gi|182436296|ref|YP_001824015.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178464812|dbj|BAG19332.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 471

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 97/321 (30%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   L  L  +            +AL++     P       +          +  
Sbjct: 85  WRLLVLAGTLWVLMRVISAVQLVVLAFAAALLVTAMLQPTVVRL-RRFGLPHGLATAVTA 143

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +  +   F+ +  M  +  L  +V                     WA +      
Sbjct: 144 VLGFVIIGLVGWFVVWQVMDNLDTLSDRVRDGIDELKR------------WALDSPFHVT 191

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    + +       + I     +   + +++   ++  + +  F   DG  I + 
Sbjct: 192 ESQINDIAKNLSDTIGTNTEEITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEW 251

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  ++A+ + + +G   ++  VP  V L V 
Sbjct: 252 SLKLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALIDAIFIGFGLYVLNVPLAVPLAVF 311

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   ++ A    +       I    L+PF++G  ++
Sbjct: 312 IFLFAFIPLVGAVVSGALAVVVALVTEGVWTALWALVVVLAVQQIEGHILQPFILGRAVR 371

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 372 VHPLAVVLAVATGGLVAGIGG 392


>gi|228997824|ref|ZP_04157428.1| hypothetical protein bmyco0003_23950 [Bacillus mycoides Rock3-17]
 gi|228761956|gb|EEM10898.1| hypothetical protein bmyco0003_23950 [Bacillus mycoides Rock3-17]
          Length = 348

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 120/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L A+ + F   P+     +K +   +   ++  V ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIAMFLYFIFNPVLVFLEAK-KVPRSLAILLLYVFIITLAA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W +      +   +   I
Sbjct: 71  VAIGVVVPTISQQLMDLVKNMPTYIKEGKVYIQELSHHRLFEWLATQDYVSIETIEKNAI 130

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +       I   A+    I  +  L +  +   LF+ ++DG +   +  S     
Sbjct: 131 EYLKEIPNT----ITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETGETLSAYIQGQALVCLFVGAFTFIGYVIMDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVSPMQAFWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  +    
Sbjct: 307 ILGVGNFAGIVGMILAVPAYAVTKTVVSNLVRLFKMKRNNRK 348


>gi|228477392|ref|ZP_04062028.1| transport protein [Streptococcus salivarius SK126]
 gi|228250827|gb|EEK10015.1| transport protein [Streptococcus salivarius SK126]
          Length = 392

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/360 (12%), Positives = 121/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILV--------------SLYFLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++ + I+ +I +               + F+     P++ ++++ +   P+   
Sbjct: 18  ILNNQAVVAFFILLLIGLTVLIFTKISPIFSPVIQFMTIIMLPLVISMLLYYLIKPLV-L 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + +   + T   ++    +  L +  +         ++  L+                 
Sbjct: 77  LVERTGLNRTMSILVIYAILGLLLVWGISTAIPSLQNQILILIRNAPSYIARANSETERW 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            ++P            LS   +  +       ++ + ++  FAS    + +   L     
Sbjct: 137 INLPILSNFHGDLESMLSDFSARMVNYAENFSSSALTWVGTFASTVARVTVAIIL----A 192

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              LF+  RD   +     S     F     ++   +   +     G   +AI   ++  
Sbjct: 193 PFILFYLLRDSQKMKHSFVSALPTRFRETTVRMLSDINSQLEGYVQGQVTVAIVVAIMFC 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+   +  G++   + M+P           + + +         + +   IE  
Sbjct: 253 IMFKIVGLRYGMTFGIMAGFLNMVPYLGSFLAMVPVVIMGLVQGPAMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ +E     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVIREIFDWYR 372


>gi|254473425|ref|ZP_05086822.1| permease [Pseudovibrio sp. JE062]
 gi|211957541|gb|EEA92744.1| permease [Pseudovibrio sp. JE062]
          Length = 363

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 120/349 (34%), Gaps = 9/349 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N Q     + +   ++ L   +G   P ++ + + +   PI     +       +  V  
Sbjct: 4   NKQLFFWLLSLAAFILFLTVFQGILLPFVAGMALAYLLDPIADYLETH-GFGRIWATVTI 62

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +F+  LL L      ++   +  +     +   + R      G     +     
Sbjct: 63  LLIFLIVFVAALLILLPILGKQLIAFLDYLPELAANLETLLRE-----GLGPQLDRLANL 117

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               Q +   +      N +  +       G   +      +   +  F+   D  ++ +
Sbjct: 118 SGQGQKIDWGAFVGQAANFVGGLLSSIWSGGQALISIIGLAVVTPVVAFYLLLDWDNMIE 177

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++DS     +    + ++R +  V+     G  ++ +  G        + G+   + +G+
Sbjct: 178 RIDSWLPRDYQQTIRTLARDMDSVVAGFVRGQVLMCLILGTFYAVGLLIVGLKFGLLIGL 237

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              +++ IP    I    +SI +       + F    +     +  F+    L+P L+GG
Sbjct: 238 TAGLISFIPYVGAIVGFGLSIGVALVQFWPDPFMIGAVLAVFVVGQFLEGNVLQPKLLGG 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +   F L      MG +G+ I     A++ V+ + ++     +
Sbjct: 298 SVGLHPVWLMFALFAFGSLMGFVGMLIAIPAAAVVGVLARFALRQYLAS 346


>gi|313668331|ref|YP_004048615.1| integral membrane protein [Neisseria lactamica ST-640]
 gi|313005793|emb|CBN87247.1| putative integral membrane protein [Neisseria lactamica 020-06]
          Length = 356

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 119/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVHALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GFNRAVASMTVMVFALLLL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL +    + +   +VS++             L     G +        ++  Q+  
Sbjct: 76  AALLLIIVPMLVGQFNSMVSRLPQLAGFMQNTLLPLLKDTVGNYVEIDQASIIAWLQAHM 135

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 LK            R     +    +++ + + L++F  D    S  +  L   
Sbjct: 136 GELSNTLKAWFP-----VLMRQSSNIVSSIGNLMLLPLLLYYFLLDWQRWSCGISKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFADTYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMLAGILVFV 250

Query: 255 PGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++    +    +      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFASWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|297183286|gb|ADI19424.1| predicted permease [uncultured Pseudomonadales bacterium
           HF0500_12O04]
          Length = 349

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/347 (22%), Positives = 157/347 (45%), Gaps = 5/347 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ +   SL+ +  F++ +    ++ F SWP+            +  A 
Sbjct: 2   LNNDRLLVQILLLVLFGASLWVMAPFWSALFWGAVLAFASWPLMRLLTRVLGGRESLAAS 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           I T+  M L   PL++L       +++  + V     +     P WL+ +P         
Sbjct: 62  ILTLGWMLLVAGPLVWLGLNLADHVRDATTFVKDVQLEGLPEAPAWLAGLPLVGERLVGI 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  +++         +++   +++ G   L+  LSI+F+     FFYRDG  
Sbjct: 122 WNTIDEQGAAMLVAIKPYLGQVGNWLLARSAQIGSGILELTLSIVFVF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  +  L E L          +V   ++    G+   A  + L+    + +AGVP  + 
Sbjct: 178 LATFVHGLLERLIGERADYYQELVAGTVQRVVNGVIGTAAAQALLALIGFLIAGVPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG+ T ++++IP G P+ +   + +L  KG+   A  L +WG + +  VD  L+P+L+  
Sbjct: 238 LGLATFLLSLIPMGPPLIWVPATAWLAWKGDYGMAIFLGIWGTLIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              LP +    G+ GG+   G +GLFIGP L+A+   +  +   + +
Sbjct: 298 GGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAIAYSLLVDWSASQQ 344


>gi|295676075|ref|YP_003604599.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
 gi|295435918|gb|ADG15088.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 371

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 151/346 (43%), Gaps = 5/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y            
Sbjct: 1   MKSDQLIERLAAVFALIVLVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTGVVGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
             A +  + ++ + + P ++  +     + E+V+ V    +     +P W+  IP    +
Sbjct: 61  LAATMIVLIILVVVLGPFVYAGFAFGAHVHEIVALVQRLFESGLPDLPPWVQRIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + L+   S  I     L      +I   A             +   I+  FFFY 
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAALAVT----HGLGLLALSIVLAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G   +  L++    +     + +  +    ++    G+   A+ +G++ G  +W+AGVP
Sbjct: 177 GGEGAAAWLNAGMRRVAGERAEYLLALAGSTVKGVVYGILGTALVQGVLAGFGFWVAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG++T  ++++PGG  + +   +I+L   G+   A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLVTFFLSVVPGGPVVVWLPAAIWLYQGGSTGWAIFLVVWGLLVVGMADNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  + 
Sbjct: 297 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAHTVLHDW 342


>gi|157693536|ref|YP_001487998.1| hypothetical protein BPUM_2783 [Bacillus pumilus SAFR-032]
 gi|157682294|gb|ABV63438.1| hypothetical membrane protein [Bacillus pumilus SAFR-032]
          Length = 380

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 122/333 (36%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  +K    P++   ++ +   PI +    +      F  ++  + ++ +  V 
Sbjct: 42  FIFTPLIVLVKTIALPIILTGVVYYLLNPIVNLLE-RFRVKRIFSILLLYIVIIGMITVT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   +M  L   +           R L+    G        K+++   S  +  
Sbjct: 101 IVSIIPFLQAQMMSLFHNLPKYVDTVEDQIRQLT----GSNFITQAQKNMNFNVSELVSK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +   T  ++        F     +  +SI+ +   LF+  +DG  +         + F 
Sbjct: 157 ASSQATKILESTFTGVGTFLGALTEIIISIVTVPFILFYLLKDGKKLPDYFLKFIPNKFR 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   +   +   + S  LG  I++   G++L   Y + G+   + L +I A  +++P  
Sbjct: 217 EHTHIVLHEMNHRLSSYILGQIIVSFCIGVLLLIGYLIIGLDYALLLAIIAACTSVVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIVIALVTSPVMLLKLIIVWTVVQLIEGKFISPQVMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +   ++G+ +     A++ VI        K
Sbjct: 337 TAGKLFSVVGIIVAIPTYAVLKVITTHLFDWFK 369


>gi|118443011|ref|YP_877809.1| permease [Clostridium novyi NT]
 gi|118133467|gb|ABK60511.1| permease [Clostridium novyi NT]
          Length = 368

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 111/336 (33%), Gaps = 1/336 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    L  +     P   A  I +   P+   F  K      F  +I  + ++    + +
Sbjct: 30  VFASGLSVVLSILTPFFWAFGIAYILNPLMIYFEKKFNLKRCFSILIVFLLLIGFITLTV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +    +  + +L++ + +             +       + L         ++     
Sbjct: 90  TIISPAIISNVGKLLNDMPIYVIKTQAWFYATINKFNLSNNTTLIQFANKGLTNITTTLT 149

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             LK+  ++     A  F   FL      I  +  L        +    L  + +     
Sbjct: 150 DSLKS-FLNVALSNAIDFTSSFLKMIFGFIISVYILKDKESFQRNAKNFLYCIFKKESID 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +      V  +     +G +I ++  G++      +   P  + + ++  I  MIP   
Sbjct: 209 SFLTFGNEVNVIFSQYIIGKSIDSLIIGILCAIGLAILQAPYVLLISLLVGITNMIPYFG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ + +  +   A  + ++  I        L P ++G  + +        ++ 
Sbjct: 269 PFIGMIPAVLITVFYSPIKAVWVLIFIVILQQFDGWVLGPKILGDKVGVSPFWIILAILV 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  T G+LG+F+G  ++A+I  + +  +    + K 
Sbjct: 329 GGGTFGVLGMFLGVPIIAVIKTLLQRFVTRRLKAKN 364


>gi|78223257|ref|YP_385004.1| hypothetical protein Gmet_2050 [Geobacter metallireducens GS-15]
 gi|78194512|gb|ABB32279.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 368

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 116/341 (34%), Gaps = 4/341 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+  +++   L   + L   F PVL ALI+ +   P+ S    K+      + ++    +
Sbjct: 21  IIVGVLVLAGLFFAWSLSSIFLPVLLALILAYVLNPVVSWLEGKRV-PRVVVILLVMTGI 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +  F     F       E+  +   +         +      +   +   +   + +   
Sbjct: 80  VVGFAGAFAFFAGSIQNELAAVQINLPDYANRFYGLIPEKVKVYLQIETPDKLYRQVDRM 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +        +     DF+ + A    + F+   +      + L++F  D     +    
Sbjct: 140 LNELRGISFDIARGAYDFV-KKAFSSTLGFILTVVGYFITPVYLYYFLADLPHFKEGALK 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L           +   +  V+ +   G   + +   ++      L G+   +A+G ++ I
Sbjct: 199 LVPERSRETVTGLGDEIDGVLSAFVRGQLSVCVILAVLYSIGLSLIGIDLAIAIGTLSGI 258

Query: 251 MAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + +IP    I    VS+ +  L   ++ +      W  I   I    + P +VG  + L 
Sbjct: 259 LFIIPYVGTIFGIVVSMIMAFLKFHDLLHPLLCLGWFVIVQAIEGALITPAIVGNRVGLH 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +     L  G +  G+ G+ +   + A++ V  +      
Sbjct: 319 PVVAIIALFIGGQWFGIFGMLLAVPVAAVLKVFLRHLTGWY 359


>gi|77460421|ref|YP_349928.1| hypothetical protein Pfl01_4200 [Pseudomonas fluorescens Pf0-1]
 gi|77384424|gb|ABA75937.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 346

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/341 (21%), Positives = 153/341 (44%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N + +++ +++ +   S + +  F++ +    ++ F SWP+            +  A++
Sbjct: 3   NNDRLLVQILLLVLFGASFWVMAPFWSALFWGAVLAFASWPLMRLLTRWLNGRESLAALL 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWT 124
            T+  M L   PL++L +     +++  + +           P WL  +P          
Sbjct: 63  LTMGWMLLVAGPLVWLGFNLADHVRDATAFIKDVQVDGLPEAPSWLGGVPLVGERLVGIW 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +  +++         +++   +++ G   L+  LSI+F+     FFYRDG  +
Sbjct: 123 NSIDQQGAALMVTVKPYLGQVGNWLLARSAQIGSGILELTLSIVFVF----FFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  + SL E L          +V   ++    G+   A  + ++    + +AGVP  + L
Sbjct: 179 AAFVHSLLERLIGDRAGYYIDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T ++++IP G P+ +   + +L  KG    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GIVTFLLSLIPMGPPLVWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             LP +    G+ GG+   G +GLFIGP L+A+   +  + 
Sbjct: 299 GNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLTDW 339


>gi|210608910|ref|ZP_03288047.1| hypothetical protein CLONEX_00226 [Clostridium nexile DSM 1787]
 gi|210152827|gb|EEA83833.1| hypothetical protein CLONEX_00226 [Clostridium nexile DSM 1787]
          Length = 450

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 113/387 (29%), Gaps = 28/387 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-----------LKGFFAPVLSALIIGFTSWPIYS 49
           +R+           +   I+    +            +     P++  L+I +   PI  
Sbjct: 41  LRQQFGKGMTAFLVVAASIVFYFAFLRFNGISNIFEKIFQILKPIIYGLVIAYLLNPIVK 100

Query: 50  SFISKK---------------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
                                +         A +  + + +     L       +++L+ 
Sbjct: 101 LVERHLTPFLEKKLKKKETAHKIGRGSGVFAALIFSVFVIVALCNMLIPELYKSIRDLIV 160

Query: 95  KVVLANQHGIPVPR--WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            +               +S+         + T+     ++             +  +   
Sbjct: 161 TLPEQMNSWAQDMNAFLISNSTLDTMLKNIITEGTDTVENWLKTDLLQQANTLMSNLTVG 220

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   ++  +  I  +  LF          + + +L +         I++   ++  
Sbjct: 221 VINVVSEIMNVLIGFIVSVYVLFSKELFSGQCKKIVYALMKPDHANMTLHITKKSNEIFG 280

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
              +G  I +   G++   A  +  +P  + + VI  +  +IP   P      S  L++ 
Sbjct: 281 GFIIGKIIDSAIIGVLCFIALSIMKMPYTLIVSVIVGVTNVIPFFGPYIGAIPSTILIMI 340

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                     ++  I   I    + P ++G    L      F ++ G    G +G+ +G 
Sbjct: 341 AEPIQGLYFAIFILILQQIDGNIIGPKILGDSTGLSAFWVVFSILLGGGLFGFVGMIMGV 400

Query: 333 VLMALIAVIWKESIMAIKENKEKISSN 359
              A++  I +  I    E K+  +S+
Sbjct: 401 PTFAVLYYIAQMFINQKLERKKLPTSS 427


>gi|229191014|ref|ZP_04318004.1| hypothetical protein bcere0002_26780 [Bacillus cereus ATCC 10876]
 gi|228592412|gb|EEK50241.1| hypothetical protein bcere0002_26780 [Bacillus cereus ATCC 10876]
          Length = 348

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 119/338 (35%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +       ++  + ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLIFLENK-KVPRNLAILLLYLFIITLTA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W S               
Sbjct: 71  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      +  + I   A+    I  +  L +  +   LF+ ++DG +   +  SL    
Sbjct: 127 KNAIEYLKDIPNTITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ I  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +      A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVGLFVFPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIIL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 307 ILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 344


>gi|302391202|ref|YP_003827022.1| hypothetical protein Acear_0410 [Acetohalobium arabaticum DSM 5501]
 gi|302203279|gb|ADL11957.1| protein of unknown function UPF0118 [Acetohalobium arabaticum DSM
           5501]
          Length = 348

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 126/348 (36%), Gaps = 9/348 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +     +  +  +++  I+  LY ++    P + A+ I +   P     I++   S  
Sbjct: 1   MLDEKRQERKALLLVLLVAIIYFLYLVRIVLLPFVLAIFIVYLVNPFVKLLINR-GVSRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V+  + V+    +   F     + E+  L +++   +     +   ++         
Sbjct: 60  LALVLIFIIVVGGLFLVGFFAAPPLIEELNALANRIPQYSIEIQKIIDSVTQKYQRFKLP 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +   + +                 + I    SRF  +            I  F+  +D
Sbjct: 120 STFQLVVDNAIERIQNIILQFVERTTEVIIGILSRFFSLI--------MAPILAFYMLKD 171

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I +   +L         K++ + + KV+     G  ++++  GL+     +L  +  
Sbjct: 172 IETIKKNFWTLIPKESRKDIKQLLKKIDKVLIDYLKGQLLVSVVVGLLSMLGLYLLDINF 231

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           ++ +G+   IM +IP    +     ++++    +  +   + +  A    +    + P +
Sbjct: 232 YLIIGIFAGIMNLIPYLGVVFGILPAVFVASFKSFQSILEVIVMFAFVQQLEGSLISPKI 291

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           VG  + L  +   F L+ G   +G++G+ +   +  +I VI    I  
Sbjct: 292 VGDKVGLHPILIIFSLLVGGELLGIIGMLLAVPVAGIIKVILNHYISR 339


>gi|266623985|ref|ZP_06116920.1| putative membrane protein [Clostridium hathewayi DSM 13479]
 gi|288864202|gb|EFC96500.1| putative membrane protein [Clostridium hathewayi DSM 13479]
          Length = 410

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 104/350 (29%), Gaps = 17/350 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------------EESSTFLAVIA 66
             L    G   PV+   ++ +   PIY+   S                   S      ++
Sbjct: 38  AGLKAFIGILMPVIYGAVLAYLLLPIYNRTRSLLEGWIAKGIKKEKTIRGLSKAGATAVS 97

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWT 124
            + +  +       +       +  L   +     +     + L +    +      ++ 
Sbjct: 98  LIVLFVIVAGLFWMVIPQIYTSIMTLQEGLGENINNLALWLQKLLEDNPSLEQKVIPMYD 157

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +  +  ++    S     +  I  +        +   +  + +I M+  L          
Sbjct: 158 EVTNQLENWLTTSLVPNVSTVISGLSSGLLSVVLALKNILIGVIVMVYLLNIKETLSAQG 217

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + S+        + +  R V +V      G  + ++  G++         +P  + +
Sbjct: 218 KKIIYSVLPLRMANQFIEELRFVHRVFGGFITGKLLDSLIIGIICFVCLNWMKMPYVLLV 277

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI  +  +IP   P      S +L++  +        ++  +        L P ++G  
Sbjct: 278 SVIVGVTNVIPFFGPFIGAVPSAFLILLVSPMKCLYFLIFIVLLQQFDGNILGPKILGQS 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             LP     F ++      G +G+ I     A+   +    +      KE
Sbjct: 338 TGLPSFWVLFSILLFGGLFGFVGMIIAVPTFAVGYSMLTGLVNRALRKKE 387


>gi|15677092|ref|NP_274244.1| putative transporter [Neisseria meningitidis MC58]
 gi|7226458|gb|AAF41601.1| putative transporter [Neisseria meningitidis MC58]
 gi|261392518|emb|CAX50073.1| conserved hypothetical integral membrane protein [Neisseria
           meningitidis 8013]
 gi|316985071|gb|EFV64024.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
 gi|325140551|gb|EGC63072.1| putative membrane protein [Neisseria meningitidis CU385]
 gi|325198350|gb|ADY93806.1| putative membrane protein [Neisseria meningitidis G2136]
 gi|325200151|gb|ADY95606.1| putative membrane protein [Neisseria meningitidis H44/76]
          Length = 356

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|182415952|ref|YP_001821018.1| putative phytochrome sensor protein [Opitutus terrae PB90-1]
 gi|177843166|gb|ACB77418.1| putative phytochrome sensor protein [Opitutus terrae PB90-1]
          Length = 821

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/331 (10%), Positives = 89/331 (26%), Gaps = 23/331 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P+  +L++ F   P+       +       A++ TV++    I  + +       +
Sbjct: 83  DVMIPLALSLMLAFLLSPVVVRLRRWRLPQP--AAILLTVTLAFSVIGVVAW---QITNQ 137

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI-- 146
              L+ ++    ++       L         +            L+  +     +     
Sbjct: 138 ALALLQELPRYEENLRKKAADLKQPDASSAVTRAIVSLERTWAELQQPAPDTHSSPATPP 197

Query: 147 --------------DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                                 +     +    +   +I+ +         +  +   + 
Sbjct: 198 GAPKPVPVEVKEGDATSLDIGRQVLSSLIKPLSTAGIVIVFVIVILFQRDDLRSRFIRVI 257

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    +      + +    L   ++    G+ +G   +  GVP     G+++ ++ 
Sbjct: 258 GGGQLNVATEAVDDAAQRVSRYLLAQLMVNTFFGVAVGLGLFFIGVPHAALWGLLSTLLR 317

Query: 253 MIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP   PI      + L   +               +   + +  +   + G    +  L
Sbjct: 318 FIPFLGPIIAVIFPLALSVAVDPGWSMLLWTAALYIVAELVTNNIIETLVYGSSTGISVL 377

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 V      G+ GLF+   L   + VI
Sbjct: 378 ALLIAAVFWSWLWGMPGLFLSTPLTVCLLVI 408


>gi|254804996|ref|YP_003083217.1| hypothetical protein NMO_1025 [Neisseria meningitidis alpha14]
 gi|254668538|emb|CBA05961.1| conserved hypothetical protein [Neisseria meningitidis alpha14]
 gi|325144636|gb|EGC66935.1| putative membrane protein [Neisseria meningitidis M01-240013]
          Length = 356

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|261405442|ref|YP_003241683.1| hypothetical protein GYMC10_1593 [Paenibacillus sp. Y412MC10]
 gi|329926788|ref|ZP_08281196.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|261281905|gb|ACX63876.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
 gi|328938988|gb|EGG35356.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 355

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 119/342 (34%), Gaps = 13/342 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
             W++  + L    FLK   AP L A+II +   PI  +   + +   +   ++     +
Sbjct: 25  FVWLLRPLFLDVYRFLKAVLAPFLVAMIISYVLNPIVCTLSDR-KVPRSIAVLLIYAVFL 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               V L+ +    + +++EL   +   + +   +   L                    +
Sbjct: 84  TSLAVILINMIPMLIRQLEELNEHLPELSMNAQSLMTNLDSRLLPPGVRTGVNSWFLQME 143

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S      +    N  + I            +   +++ +   +F+  +D     +   S 
Sbjct: 144 SRLAGGISDFMDNIGNTI------------NILFNVLIVPFLIFYILKDFEVFQRTAVSY 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      + + +   + +   G  ++ +  G++    Y + G+P  + L  I A+ 
Sbjct: 192 LPRSRRKSIVTLLKEIDTALGNYVRGQFLVCLIIGVLAYVGYMIVGMPYALLLASIVAVF 251

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P    A ++ +    +      + +   +   +    + P +VG  + +  L 
Sbjct: 252 NIIPYLGPFLGAAPALVMASTISWRMVLLVAVVNMVCQTLESNVISPQVVGKKLHMHPLL 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F L+ G +  G +GL +   + A+I V+ +         K
Sbjct: 312 IIFALLVGGQVAGTVGLILAVPVFAVIKVLLQHVFAYYVRKK 353


>gi|300859323|ref|YP_003784306.1| hypothetical protein cpfrc_01906 [Corynebacterium
           pseudotuberculosis FRC41]
 gi|300686777|gb|ADK29699.1| putative membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302207004|gb|ADL11346.1| Putative integral membrane protein [Corynebacterium
           pseudotuberculosis C231]
 gi|308277257|gb|ADO27156.1| Putative integral membrane protein, predicted permease
           [Corynebacterium pseudotuberculosis I19]
          Length = 453

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 93/302 (30%), Gaps = 14/302 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP      SKK   +T   +I  +            +      + K+LV +     Q 
Sbjct: 97  VLWPPVRWLRSKKVPPAT-AVLIVAIGFFGAIGSIFAAMAPSVSSQSKDLVDRANEGVQR 155

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            +                       +      I + T         I             
Sbjct: 156 ALHWAEH------------GPLNLDTSQVDGYIQNVTQALQEHSRNIANGVFSGLTTASS 203

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             ++II M+I  FFF +DG      +  +       +  ++   +  V+        I++
Sbjct: 204 ILITIILMLILSFFFLKDGTRFLPMVRRVAGPNLGWHLTEVLTRIWNVLAGFIRAQAIVS 263

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCL 281
           + + +++G    +  VP  + L V+T     IP     +      +  L+   + NA   
Sbjct: 264 LVDAVLIGIGLLILKVPLALVLAVLTFFGGFIPIVGAFTAGALAVVIALVSNGVSNAIFA 323

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +       I    L+P L    + L        +  G     ++G F+   + A +AV+
Sbjct: 324 LILIITVQQIEGHILQPVLQSRAMNLHAAVVLLSVTIGSALFSVVGAFLAVPVAATLAVL 383

Query: 342 WK 343
            +
Sbjct: 384 IR 385


>gi|69244433|ref|ZP_00602849.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|293559545|ref|ZP_06676080.1| hypothetical protein EfmE1162_0235 [Enterococcus faecium E1162]
 gi|293570139|ref|ZP_06681218.1| hypothetical protein EfmE1071_2681 [Enterococcus faecium E1071]
 gi|314948604|ref|ZP_07851980.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|68196374|gb|EAN10802.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|291587338|gb|EFF19223.1| hypothetical protein EfmE1071_2681 [Enterococcus faecium E1071]
 gi|291606497|gb|EFF35896.1| hypothetical protein EfmE1162_0235 [Enterococcus faecium E1162]
 gi|313644981|gb|EFS09561.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 424

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 71  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 128

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 129 LGSIWLIPFLEEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 188

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  RD     Q + ++    
Sbjct: 189 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRDPQKFYQSVLAIVPPA 244

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 245 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 304

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 305 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 364

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 365 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 401


>gi|258626151|ref|ZP_05720999.1| permease PerM, putative [Vibrio mimicus VM603]
 gi|258581506|gb|EEW06407.1| permease PerM, putative [Vibrio mimicus VM603]
          Length = 396

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 114/357 (31%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 50  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTV 108

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 109 AVVIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQQFITSLPERYPELAHLE 168

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 169 IVESVISNAKNKVLGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 220

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  I  G V    + +  +   
Sbjct: 221 QEMLRMASGVLP-RNRKLATKVWEEMNQQISNYIRGKVLEIIIVGTVSYITFAILDLRYS 279

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 280 VLLAVAVGLSVLIPYVGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPI 339

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  +WK       E +  I
Sbjct: 340 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLEDEPEASI 396


>gi|304404775|ref|ZP_07386436.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
 gi|304346582|gb|EFM12415.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
          Length = 385

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 115/334 (34%), Gaps = 5/334 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    +   K    P+L   ++ +   PI    + +      +  ++  V ++ +  
Sbjct: 40  ISFIFTPFIVLAKTVLLPLLLTGVVYYLLNPIVDGLV-RLRLKRGYAILLLYVIIIAVIA 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +L +      ++  L++     +       R            +    +         
Sbjct: 99  LVILAVIPLIRQQITSLITNFPSYSDQMEVQFREWIGSDFFNQLEQATGLNHMDLTDQVT 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + + TN    +  +         +  L+I+ +   LF+  +DG  +S+ +       
Sbjct: 159 SRISSVLTNTWHHLGGWLGAVT----EIVLAIVTVPFVLFYLLKDGHKLSEVILGFIPTA 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++       I S   G  II++  G +L   Y + G+   + L +  A  +++P
Sbjct: 215 LRPETRRVLHESNHQISSYIRGQIIISLCIGALLYIGYLIIGLEYSLVLAIAAACTSVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ +    +      +     I   I  K + P ++G  +++  +   F 
Sbjct: 275 YLGPVIAITPALIVATVTSPTMLLKMIAVWTIVQLIEGKFISPQIMGKTLRIHPVTIIFV 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++      G+LG+ +     A++ VI        
Sbjct: 335 ILTAGNLFGILGIILAVPGYAVLKVISTHVFRWF 368


>gi|254283806|ref|ZP_04958774.1| transporter, PerM family [gamma proteobacterium NOR51-B]
 gi|219680009|gb|EED36358.1| transporter, PerM family [gamma proteobacterium NOR51-B]
          Length = 373

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 65/349 (18%), Positives = 148/349 (42%), Gaps = 1/349 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  +++        FF  +L A+I+  T +P++   + K +  +   + +  +++
Sbjct: 20  IRVGLIALVVVACARIFAPFFGIMLWAVILAVTLFPLHQKLVPKFDGRAGRASTLMVLAI 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  VP++ L    +    +++S +        PV   +  IP          +  S  
Sbjct: 80  LLILGVPMVTLGISAVDHTTDVLSNMKSGEFEVPPVNPAVGKIPIVGENLIALWESASED 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  +       ++    +   A+      L    S+I   + + + +    ++ + L +
Sbjct: 140 FAGTLRDHKDQVSHYASVLLNSATSMLGAVLLSMGSMIIAGVMMAYGHAGAAAMERVLHA 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L         +++ R+    +RS  +G+  +A+ + L+LG  + LAG+P+   L      
Sbjct: 200 LVGDAGNNRGQQVLRLSTATVRSVAVGVIGVALIQALLLGVGFLLAGIPAAGLLTFAVFF 259

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++   A +    +  YL   G+    A  +     I     D  L+P L+G  +  P 
Sbjct: 260 LGILQLPALLITLPIIAYLWGVGDGSTLANSIASVYFIVAGTADGFLKPMLLGRGVDAPM 319

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G +GG+ +MG+LGLF+G V++A+   I+   +  + + +E ++S
Sbjct: 320 PVILLGALGGMVSMGMLGLFVGAVVLAVGYQIFMAWVDFVCDGREPLTS 368


>gi|256822848|ref|YP_003146811.1| hypothetical protein Kkor_1631 [Kangiella koreensis DSM 16069]
 gi|256796387|gb|ACV27043.1| protein of unknown function UPF0118 [Kangiella koreensis DSM 16069]
          Length = 376

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 117/360 (32%), Gaps = 12/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  I+  M++ +    +  +    AP+L AL+  +    + S    +K     +
Sbjct: 10  KRNFSSPATIVLSMLLIVGFFIILTVGDILAPILWALVFAYLLESVVSVL-RRKGVPRIW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++     + L ++ +  L      +  +LV+++             L +      ++E
Sbjct: 69  AVLLVFAGFIGLVLIVVFGLIPLVWEQGAKLVAELPNIMTKVRESILELPEKYPNFVSTE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             +   ++  S        + +  +  +   A+          + II + + +FFF +D 
Sbjct: 129 QVSAFFANLNSELAKWGEAILSASVSSLMSVAT--------VMVYIILVPLLVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I                + +   V + I +   G  +  +  G     A+ + G+   
Sbjct: 181 RQIISWCTQWLPQE-RHLAEAVWSEVNQQIGNYIRGKVLEIVIVGTASYIAFLIMGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + LGV   +  +IP       T     +     G   +   L +   I   +    L P 
Sbjct: 240 LLLGVCVGLSVLIPYIGAALVTIPVALIAFFQWGFTHDFYILIVVYLIIQILDGNLLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +    + L  +     ++      G  G+F    L  L+  +         + +++    
Sbjct: 300 IFSEAVNLHPVAIIGSILLFGGLWGFWGVFFAIPLAILVNAVLSALKDHKIQLEKEKQKE 359


>gi|189352951|ref|YP_001948578.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|189336973|dbj|BAG46042.1| putative permease [Burkholderia multivorans ATCC 17616]
          Length = 356

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 155/323 (47%), Gaps = 5/323 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+     +        T +A I T +V  L ++P+    
Sbjct: 35  WVIRAFIPAIAWACVIAIAMWPLLQRIEANALLRNRPTLVATIVTAAVSLLVVLPVAMAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +++  +L         +GIP+P  ++ +P G      W +         + + T + 
Sbjct: 95  TQAIVQAHDLREWFQSIRDNGIPLPDVVNRLPYGAAQITQWWQTNLGHP---LHAATAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               + +  F  +FG           FM++ LF   R G  ++ +L    +  F      
Sbjct: 152 GASGEKVLAFGRQFGTRVAHAVFEFGFMLVTLFVIVRAGHRLAGELLQGAQRAFGHDGAH 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   ++ T  G+ ++ +GEG +LG AY LAGVP    LGV+TA+ AM+P  AP+ F
Sbjct: 212 LIERMVAAVQGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGVVTAVAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGATVWAIVIAVLGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            GL+GLF+GP LM ++ V+W E 
Sbjct: 332 FGLIGLFVGPALMTVLTVLWAEW 354


>gi|159039525|ref|YP_001538778.1| hypothetical protein Sare_3997 [Salinispora arenicola CNS-205]
 gi|157918360|gb|ABV99787.1| protein of unknown function UPF0118 [Salinispora arenicola CNS-205]
          Length = 413

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 114/342 (33%), Gaps = 16/342 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++ + + + L    G    V+ AL +    +P  +    +          + T++++
Sbjct: 88  LGALLAYALFLGLRNAAGLLVLVVIALFLAVGLYPAVARL-RRLGLPHGLAVAVVTLTLL 146

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            LF   ++ L    + +  + + +     +                         L    
Sbjct: 147 LLFCSGVVALVPPVVTQSNQFIEQFPNYVESLRR---------------NETINELVERY 191

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L    E    T+ +            +        + +++   +F      +     +L
Sbjct: 192 DLMERIERAADTDTLGHALGGVLGGAQLIFGTAFRTLTVLVLTVYFLAYFNRLRSLGYAL 251

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + I   +   + +  +G  IIA+  G        +A +P   AL V+ A+ 
Sbjct: 252 VPRSRRDRVRLIGDEIIMKVGAYIVGALIIAVLAGTTTFVFAVIAELPYPFALAVVVAVA 311

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP         +   +    ++       ++  I   + +  + P ++   +++  + 
Sbjct: 312 DLIPQIGATLGAVIVSLVGFATDLPVGIACVVFFLIYQQLENYLIYPKVMRRSVQVNEVA 371

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                + GV  +G++G FI    +A   +I +E I+  ++++
Sbjct: 372 ALVAALLGVALIGVVGAFIAIPTVAAFQLILREVIVPRQDSR 413


>gi|326776925|ref|ZP_08236190.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326657258|gb|EGE42104.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 471

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 97/321 (30%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   L  L  +            +AL++     P       +          +  
Sbjct: 85  WRLLVLAGTLWVLMRVISAVQLVVLAFAAALLVTAMLQPTVVRL-RRFGLPHGLATAVTA 143

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +  +   F+ +  M  +  L  +V                     WA +      
Sbjct: 144 VLGFVIIGLVGWFVVWQVMDNLDTLSDRVRDGIDELKR------------WALDSPFHVT 191

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    + +       + I     +   + +++   ++  + +  F   DG  I + 
Sbjct: 192 ESQINDIAKNLSDTIGTNTEEITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEW 251

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  ++A+ + + +G   ++  VP  V L V 
Sbjct: 252 SLKLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALIDAIFIGFGLYVLNVPLAVPLAVF 311

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   ++ A    +       I    L+PF++G  ++
Sbjct: 312 IFLFAFIPLVGAVVSGALAVVVALVTEGVWTALWALVVVLAVQQIEGHILQPFILGRAVR 371

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 372 VHPLAVVLAVATGGLVAGIGG 392


>gi|309378483|emb|CBX22908.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 356

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 120/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLIFALGDALTPFAVAAVLAYVLDPLVDWLQKK-GFNRAVASMTVMVFALLLL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL +    + +   +VS++                +P        + +         
Sbjct: 76  AALLLIIVPMLVGQFNSMVSRLPQLAGFMQNTL-----LPLLKDTVGNYVEIDQASVIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R     +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNTLKAWFPVLMRQSSNIVSSIGNLMLLPLLLYYFLLDWQRWSCGIGKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFADTYTRITGHLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++    +    +      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFASWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|258621078|ref|ZP_05716112.1| permease PerM, putative [Vibrio mimicus VM573]
 gi|262166255|ref|ZP_06033992.1| permease PerM [Vibrio mimicus VM223]
 gi|258586466|gb|EEW11181.1| permease PerM, putative [Vibrio mimicus VM573]
 gi|262025971|gb|EEY44639.1| permease PerM [Vibrio mimicus VM223]
          Length = 356

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/357 (14%), Positives = 114/357 (31%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P       I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQL-RRLRIPRTV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI       L I+ +  L      ++  L++ V             L +    +   E
Sbjct: 69  AVVIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYSGTQQFITSLPERYPELAHLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVISNAKNKVLGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  I  G V    + +  +   
Sbjct: 181 QEMLRMASGVLP-RNRKLATKVWEEMNQQISNYIRGKVLEIIIVGTVSYITFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYVGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  +WK       E +  I
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSLEDEPEASI 356


>gi|188990769|ref|YP_001902779.1| Putative permease (PerM) family protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732529|emb|CAP50723.1| Putative permease (PerM) family protein [Xanthomonas campestris pv.
           campestris]
          Length = 388

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 124/349 (35%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S      +  +
Sbjct: 14  RRLKWAAVIVGVLWVVSLLSPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNMAVTLVFI 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L+ L      ++  L+  +       I                EL      
Sbjct: 73  LMVLLVVLALMILVPMMERQIMTLIDALPQMRDWAIGTA---IPWLERRTGVELMGWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S              + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIEWIRSHWEQAGGVAKTFFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRMVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     +++     V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTVSRLALESNDVLGGFIRGQFLVMLALGAIYATGLSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GFISFIPYLGATTGIVLALLAAIVQAQGFDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +     ++ 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHERYTQSD 358


>gi|302670428|ref|YP_003830388.1| hypothetical protein bpr_I1065 [Butyrivibrio proteoclasticus B316]
 gi|302394901|gb|ADL33806.1| hypothetical protein bpr_I1065 [Butyrivibrio proteoclasticus B316]
          Length = 382

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 109/334 (32%), Gaps = 8/334 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMCLFIVPLL 79
           L G+  PV+S +I+ +   P+   F  K                    + ++   ++  +
Sbjct: 42  LYGYIKPVVSGMIVAYIFNPLSKVFNDKVFRKMKNESAKWKLSVCCTIIVIVLAVVLLFV 101

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L       +   VS V         V R L         S       S    +      
Sbjct: 102 ALIPQLADSISTFVSNVDGYVATTQGVLRDLEKNDTTGLFSGELGALASFTDKILDKIGE 161

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           +   N  + +   A   G    D  ++ I  I  L    R     ++    + +      
Sbjct: 162 YFSNNVGNVVTTSA-SIGKSVFDAVIAFILAIYLLLDKTRLKNGFARFTRLIMKPENHEN 220

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                     +I        +  I  G V      +AG+P  V + VI  +  + P   P
Sbjct: 221 VAIFLDRCNSIIIRYISFDIVEGIIVGAVNLIFMLIAGMPYSVLISVIVGVTNLAPTFGP 280

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I    +  ++L+  N + A     +  +   I    L+P L G  + +  L     +V G
Sbjct: 281 IVGCVIGAFILVLVNPWYAVAFIAFTIVLQTIDGYILKPRLFGESLGVSPLMILIAIVVG 340

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            R  G++G+ +     A+I  +W++ ++   E +
Sbjct: 341 GRLFGVVGILLAIPFAAIIDFVWRDYVLKKLEER 374


>gi|325924381|ref|ZP_08185920.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325545142|gb|EGD16457.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 389

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 123/349 (35%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S      +  V
Sbjct: 14  RRLKWVAVIVGVLWVVSLLSPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNMAVSLVFV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + LF++ L+ L      ++  L+  +       I                EL      
Sbjct: 73  LALLLFVLALMILVPMIERQIMTLIDALPQMRTWAISTA---IPWLEAKTGVELMGWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S              +  R G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIDWIRSHWEQAGGAAKTFFGYVQRSGFAMVTWVINLALLPILAFYFLRDWDRLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     +++     V+     G  ++ +  G++  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTVSRLALESNDVLGGFIRGQFLVMLALGVIYATGLSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++ IP     +   +++   +      ++     + +   +   +    L P +VG  
Sbjct: 250 GFISFIPYLGATTGIVLALLAAVVQAQGLDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +      + 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHEQYTHSD 358


>gi|294623323|ref|ZP_06702184.1| hypothetical protein EfmU0317_2584 [Enterococcus faecium U0317]
 gi|291597258|gb|EFF28448.1| hypothetical protein EfmU0317_2584 [Enterococcus faecium U0317]
          Length = 424

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 71  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 128

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 129 LGSIWLIPFLEEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 188

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  RD     Q + ++    
Sbjct: 189 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRDPQKFYQSVLAIVPPA 244

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 245 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 304

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 305 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 364

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 365 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 401


>gi|148263830|ref|YP_001230536.1| hypothetical protein Gura_1773 [Geobacter uraniireducens Rf4]
 gi|146397330|gb|ABQ25963.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 357

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 111/345 (32%), Gaps = 4/345 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  ++    ++ +YF    F PV  ALI+ +   P+    + +   + T   +     
Sbjct: 9   AVLAGLLCIGAIILVYFSVTIFLPVFIALILTYILNPLVVMLVKR-GMNRTVAIIAVFCF 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L ++           E   +   +                    +       +HL+ 
Sbjct: 68  LVLLAMLTGFLFISSLKAEFSTVQINLPEYAGRLYGYIPGEVKTYLDIETPAKAYQHLNA 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      L       + R  S      L          I L++F  D   +   + 
Sbjct: 128 ALEELRGISFNLFKETFAVVTRAFSSTLAFILAVL-GYFITPIYLYYFLSDLSEMKSGML 186

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         ++    V +V+ +   G   +     ++     ++ G+   V +G +  
Sbjct: 187 DLIPERHRDRLRERVGEVNEVLSAFVCGQLSVCAILAVLYSIGLYVIGIDLAVLIGTLAG 246

Query: 250 IMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + +IP    I       ++ LL   +  +      W A+        + P +VG  + L
Sbjct: 247 ALFIIPYFGTILGIIFSMTMALLKFHDFLHPLLCLGWFALVQAAEGGIITPKIVGDKVGL 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + T   L+ G +  G+ G+ +   + A++ V ++  +   +  
Sbjct: 307 HPIITILALLIGGQLFGIFGMLLAVPVTAVLNVFFRSLLDYYRRT 351


>gi|126735141|ref|ZP_01750887.1| hypothetical protein RCCS2_14729 [Roseobacter sp. CCS2]
 gi|126715696|gb|EBA12561.1| hypothetical protein RCCS2_14729 [Roseobacter sp. CCS2]
          Length = 367

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/362 (14%), Positives = 118/362 (32%), Gaps = 28/362 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q     +     LV L+FL     P +    I +   PI      K   S      I T
Sbjct: 7   QQAKYWGVATAFFLVVLWFLGDVILPFVLGGAIAYCLDPIADRLE-KAGCSRMAAVAIIT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + +F++  L +    + +   L+                   +  G+          
Sbjct: 66  IVTILIFVLLFLLVIPTLVQQTASLIDTAPELFD----------RLRTGLTERFPQLMDN 115

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 ++L+      +    +        +  ++  + ++ + +   +   D  +++ +
Sbjct: 116 QSVAYQQLLAVGETIQSKGGELVNGLVSSALGLINILVLLVIVPVVAVYMLLDWDNMTAK 175

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D +         ++++R +   + S   G   + +  G     A  LAG+   + +G I
Sbjct: 176 IDDMLPRDHVDTIRQLARDIDATLASFIRGQGTVCLVLGTYYAVALMLAGLNFGLIVGFI 235

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKG-----------------NIFNATCLFLWGAIELF 290
             ++  IP    +    +++ L +                   N      +     +  F
Sbjct: 236 AGLITFIPYIGALVGGVLAVGLALFQFWGSVEVVDGDTISYTTNWLRIGIVAGIFGLGQF 295

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L P LVGG + L  +   F L       G +G+ +   + A+I V+ +  +   K
Sbjct: 296 LEGNILTPKLVGGSVGLHPVWLLFALSVFGTLFGFVGMLVAVPIAAMIGVVARWGLGQYK 355

Query: 351 EN 352
            +
Sbjct: 356 HS 357


>gi|260654239|ref|ZP_05859729.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
 gi|260630872|gb|EEX49066.1| putative membrane protein [Jonquetella anthropi E3_33 E1]
          Length = 354

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 123/348 (35%), Gaps = 5/348 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +      +  +    ++ L+ F+  +  A  +     P+Y  F       S+  A +
Sbjct: 11  RTERRSFLIALGLVTAAFVWLLRPFWGTLFWACALAVLCAPLYRRFQKATGWRSSPSAAV 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V    I PL         +   +   V       I + ++   +       +    
Sbjct: 71  TLAVVAVAVIGPLCLFAASFFAQATSIYRDVQSG---AIDLSQYSLRVRQSFPVVQAALT 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L    S      T        F+ + A   G   L         +   FF  RDG S++
Sbjct: 128 RLGLGGSSLSEGMTSAVLAAGRFVTQNAVSLGQGALGLFADSCLALYMAFFLIRDGGSLA 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L      L     +++      VIRST  G  ++A   G++        G+   +  G
Sbjct: 188 EILIKALP-LGDKRERRLFETFVGVIRSTVKGNVLMAFLHGVIGAVTLGFLGMNGLLLWG 246

Query: 246 VITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V   +++++P     + +  +SIY+   GN      L       +  VD  LRP +VG  
Sbjct: 247 VAMGVLSLVPLVGTAVVWLPLSIYMASSGNWTGCFFLAGVEIAAMVGVDNVLRPAMVGRS 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +++P        +GG+ + GL G+  GP++ AL    WK  +  + + 
Sbjct: 307 LQMPDYLVLLSTLGGLASFGLGGMIAGPLVAALFVSAWKIFMGELNDR 354


>gi|146283164|ref|YP_001173317.1| transporter, putative [Pseudomonas stutzeri A1501]
 gi|145571369|gb|ABP80475.1| transporter, putative [Pseudomonas stutzeri A1501]
          Length = 365

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 121/344 (35%), Gaps = 8/344 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           TM +    +    + +    +Y L     P L  +++ +   P+          S T+  
Sbjct: 2   TMNDSNRWLWLAGLLLCTWLVYLLTPILTPFLIGVLLAYLGDPLVDRLERW-GLSRTWGV 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +        L +V LL L      +M +L     LA      V         G+  +   
Sbjct: 61  IAVFALFSLLLLVLLLVLVPMLGKQMVKLYQLAPLALDWLQHVALPWVQTQFGLEDNFWQ 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L         +     T+ +  I   A+   +  L +  +++ + +  F+  RD   
Sbjct: 121 LDRLKA----AFTAHLGSTTDVLGMILSSATASSLALLAWIGNLLLIPVVSFYLLRDWDL 176

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I  +L SL          ++     +VI +   G  ++ +   ++  S   L G+   + 
Sbjct: 177 IMLKLRSLLPRKREGMVVRLMSECHEVIGAFLRGQLLVMLALAIIYASGLMLVGLELGLL 236

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGN---IFNATCLFLWGAIELFIVDKTLRPFL 300
           +GV+  + +++P    +     ++   +       +    + +   +   +    L P L
Sbjct: 237 IGVLAGLASIVPYMGFVVGIGAAVIAALFQFGLAPYPLIGVAVVFTVGQMLEGMLLTPLL 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  I L  +   F ++ G +  G  G+ +   + A+I V+ + 
Sbjct: 297 VGDRIGLHPVAVIFAVLAGGQLFGFTGVLLALPVAAVIMVLLRH 340


>gi|323479884|gb|ADX79323.1| conserved hypothetical protein [Enterococcus faecalis 62]
          Length = 381

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 7/342 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 32  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 91  LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 145 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAIQRFLPEKRK 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 205 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYL 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      A    L   +   +    + P ++G  +K+  L     L+
Sbjct: 265 GPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 GLLG+F+G    A+   I    I  +K  + +  +N
Sbjct: 325 VAGNLAGLLGIFLGVPFYAICRTIIYYVIDMVKAGRSEKVTN 366


>gi|256959836|ref|ZP_05564007.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256950332|gb|EEU66964.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
          Length = 381

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 107/323 (33%), Gaps = 7/323 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+      F    FAPVL A  + +   P+ +  + K +    +  ++  + ++   ++ 
Sbjct: 32  FLFAPIGTFFSTLFAPVLVAGFLYYLLNPVVNLLM-KTKMKRIYAVLLVFLLLIIALVLI 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL +      ++  L S +    +        ++++P            L+       +S
Sbjct: 91  LLTIIPKLADQLASLASSMPDFFKQVETWIYEIAELPIFKQID------LTSYIEKMDIS 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +    +  +               + ++     LF+  +DG  +   +         
Sbjct: 145 YANIIQQFLSSLSSSLGSIVSTVASTTIVLVTAPFILFYMLKDGDKLVPAVQRFLPEKRK 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + + S   G  I  +  G      Y L GV      GVI     +IP  
Sbjct: 205 DDIVDLLGQLNQTLSSYISGQAIECLFVGTFTIIGYSLLGVRYAFLFGVIAGFTNLIPYL 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ + I      A    L   +   +    + P ++G  +K+  L     L+
Sbjct: 265 GPYLGLAPAVLVTIFNEPVKAALCCLVVLVVQQLDGNIIYPNVIGKSLKIHPLTIILILL 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAV 340
                 GLLG+F+G    A+   
Sbjct: 325 VAGNLAGLLGIFLGVPFYAICRT 347


>gi|163791064|ref|ZP_02185485.1| hypothetical protein CAT7_12140 [Carnobacterium sp. AT7]
 gi|159873709|gb|EDP67792.1| hypothetical protein CAT7_12140 [Carnobacterium sp. AT7]
          Length = 393

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 111/338 (32%), Gaps = 5/338 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I FI            AP++ A I+ +   PI        +    +      V+++ + 
Sbjct: 35  AIAFIFEPLQVIFSTLIAPLILAFILYYLLNPIVDWLERY-KIKRIWGVTFLFVAIIGIL 93

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  +   F     ++  LV+                 +      ++    + L+   S  
Sbjct: 94  VGLVALAFPPIQDQVTSLVNNFPSYVDTIGTTVLGWVEGTPLENSASDLVEWLNGWVSNI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  +  D      +       +  + I+   I  FF  +D       +  +   
Sbjct: 154 ----PSVVVDYFDTAVNGLTNIFSTVSNVVVVIVTFPIIAFFLLKDDEKFFSYVIKIISP 209

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F    K I   +   + S   G  +I++  G+++   + + G+     L ++    ++I
Sbjct: 210 KFRKDIKNIFATINDQVGSYIKGQLMISLSLGIMMFIGFTIIGLEYAGVLAIVATFTSII 269

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P          +I + +  +      L +  A+  FI    + P ++G  + +  L    
Sbjct: 270 PYVGAALAMIPAIIIALTTSWVMVLKLLIVWAVVQFIDGNLVEPNIMGKNLNVHPLTIII 329

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+     +G +GL +G  + A+  VI        K+ 
Sbjct: 330 VLLVLGDLLGFVGLVLGVPIYAISRVIATFVFRKFKQR 367


>gi|296160670|ref|ZP_06843485.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295889196|gb|EFG68999.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 371

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 151/354 (42%), Gaps = 5/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
           + A +    ++ + + P ++  +     + ++V+ V    +     +P W++ IP    +
Sbjct: 61  WAATLIVFIILIVVLGPFVYAGFAFGAHVHDIVALVQRLFEAGLPDLPSWVARIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + L+   S  I     L      +I   A             +   I+  FFFY 
Sbjct: 121 IETFWERLTSSNSELIAQLRTLAAPAGKWILAAAIAVT----HGLGLLALSIVLAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP
Sbjct: 177 GGEGAAAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +     +
Sbjct: 297 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPAAR 350


>gi|148979870|ref|ZP_01815748.1| permease PerM [Vibrionales bacterium SWAT-3]
 gi|145961562|gb|EDK26863.1| permease PerM [Vibrionales bacterium SWAT-3]
          Length = 358

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 113/355 (31%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQ-RLGIPRTP 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    L ++ +  L      ++  L++ +             + +    +   +
Sbjct: 69  SVMLVILMFFSLMLLAIFGLVPTIWEQVGNLINDIPSMYGSLQKFIATIPERYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESVMSNAKNKALGMGESVVKGSLASLVSLAT--------LGVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMIRMASGVLP-RNRRLATKVWEEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V      +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 VLLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  +     ++      G  G+F    L  L+  +W        ++  
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHALDDDP 354


>gi|168487562|ref|ZP_02712070.1| transport protein [Streptococcus pneumoniae CDC1087-00]
 gi|183569624|gb|EDT90152.1| transport protein [Streptococcus pneumoniae CDC1087-00]
          Length = 388

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 113/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     PV+ + ++ +   PI        + +   +  I  V +    I
Sbjct: 42  ISFLFSPVLDFLAVVMLPVILSGLLYYLLNPIVDWMEKH-KVNRVIVITIVFVIIALFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V +  +    +   L              + L++  S   
Sbjct: 101 WGLAVAIPNLQRQVLTFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L       
Sbjct: 161 VLASKVSSQAVNWVSAFISGASQVIVALI----IVPFMLFYLLRDGKGLRNYLTQFIPRK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V + + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGQVLSDVNQQLSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFEWYK 371


>gi|56962071|ref|YP_173794.1| hypothetical protein ABC0291 [Bacillus clausii KSM-K16]
 gi|56908306|dbj|BAD62833.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 364

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 112/330 (33%), Gaps = 6/330 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI +      +  F P++ +L+I +   P  +    K         +I  +++  L 
Sbjct: 25  LVNFIFMPIAVLFQTLFTPIVISLVIYYLLRPFVNLLNKKLH--RGLSILIVFLALAGLA 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL++      +    V  V         +   L   P      E     L       
Sbjct: 83  TTALLYVGPLLQEQFMTFVDNVPGYANDLHHLFVDLQKQPALQNFLESTDFSLDELSGTL 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +      + ID I  F         +  +  + +   LF+  ++G      + +    
Sbjct: 143 TENLQGYLQSIIDSIGTFIGAVA----NVVIIAVIIPFVLFYMLKEGKKAPMMVINQFPA 198

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K++   + K + S   G  +++   G++    Y +  +   + L ++     +I
Sbjct: 199 REQEEGKRVLGDLDKALSSYIQGQILVSACVGVLCLIWYLIIKLDYALILALVALFTNVI 258

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P   TA ++ + +  +   A  + +   I   I      P ++G  + +  L   F
Sbjct: 259 PFIGPWIGTAPAVIVALFDSPGKAFLVIVGVVIIQQIESNVFSPQIMGRQLSVHPLTIIF 318

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L+   +  G +G+ +     A+  VI + 
Sbjct: 319 VLLVASQLAGFVGILLAVPAYAVSKVIVQH 348


>gi|306829411|ref|ZP_07462601.1| membrane protein [Streptococcus mitis ATCC 6249]
 gi|304428497|gb|EFM31587.1| membrane protein [Streptococcus mitis ATCC 6249]
          Length = 388

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI L  L FL     PV+ + ++ +   PI        + +      I  V +    I
Sbjct: 42  ISFIFLPVLDFLGIVMLPVILSGLLYYLLNPIVDWMEKH-KINRVLAISIVFVIIGIFII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      V    +    V   L              + L++  +   
Sbjct: 101 WGLAVAIPNLQRQVLNFAKNVPSYLEDADRVINDLVTKRLPDDFRPQLEQVLANVSTEAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +  + + +  ++++  F S    + +        +   LF+  RDG  +   L     + 
Sbjct: 161 MWASKISSQAVNWVSSFISGASQVIVAVI----IVPFMLFYLLRDGKGLRDYLTKFIPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V K + +   G   +AI   ++    + + G+   V LGV   I+ ++P
Sbjct: 217 LKEPVGEVLSDVNKQLSNYVRGQVTVAIIVAIMFIIFFKIIGLRYAVTLGVTAGILNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+ +G  + A   V+        K+
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVISAIFNWYKK 372


>gi|254228422|ref|ZP_04921848.1| domain of unknown function, putative [Vibrio sp. Ex25]
 gi|262393563|ref|YP_003285417.1| permease PerM [Vibrio sp. Ex25]
 gi|151939010|gb|EDN57842.1| domain of unknown function, putative [Vibrio sp. Ex25]
 gi|262337157|gb|ACY50952.1| permease PerM [Vibrio sp. Ex25]
          Length = 357

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 113/358 (31%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +           +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKMC-RMGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  +  + L ++ L  L      ++  L++ +             L +    +   E
Sbjct: 69  SVIIVILMFVGLMLIALFGLVPTIWTQVGNLINDIPNMYNGLQKFIVTLPERHPELANLE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETVVTNAKNQALGLGESVVKGSLASLVSIAT--------LAVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMLRIASGVLP-KNRKLANKVWHEMNEQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLAPPFYWLLLAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    + L  +     ++      G  G+F    L  L+  +W       +    +  
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSTEENEPVEQE 357


>gi|327468532|gb|EGF14011.1| permease [Streptococcus sanguinis SK330]
          Length = 364

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 113/342 (33%), Gaps = 7/342 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEEFLDKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A        +   I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQVVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           + G    GL+G+     + A+I  + +E ++  +E K  +  
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKALVKE 364


>gi|293394974|ref|ZP_06639262.1| PerM family permease [Serratia odorifera DSM 4582]
 gi|291422502|gb|EFE95743.1| PerM family permease [Serratia odorifera DSM 4582]
          Length = 398

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/356 (13%), Positives = 115/356 (32%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G   P+L A+++ +      +    +   S T+
Sbjct: 52  RRRFTDPQAIALLVILLAGFCILYFFHGILTPLLVAIVLAYLLEWPTARLQ-RIGCSRTW 110

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V    + ++ +L +      +   L++ +             L      +    
Sbjct: 111 AASMVLVVFGGIAMLLVLVVAPTAWQQGINLMTDLPGMVNQFYNYAATLPKRYPAL---- 166

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + +  FF  +D 
Sbjct: 167 ----VDAGIIDMMAENLRARLSGLGESVVKFSLASLVGLLTLAIYLILVPLMAFFLLKDK 222

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + +  +   
Sbjct: 223 EQMLNAVRRVLP-RNRGLAGQVWIEMNQQITNYIRGKVLEMVIVGVATYLVFIILDMRYS 281

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   + + +      A    L +   +   +    L P 
Sbjct: 282 LLLAVLVGFSVLIPYIGAVLVTIPVVVVAMFQWGVGADFWTLIVAYLVVQGLDGNLLVPI 341

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  L     ++      G  G+F    L  L+  +       +  + EK
Sbjct: 342 LFSEAVNLHPLVIILSVIVFGGLWGFWGVFFAIPLATLVKAVVHAWPDDMLVDMEK 397


>gi|254823821|ref|ZP_05228822.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|293593043|gb|EFG00804.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 378

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQDLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDLDIKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGRFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|330958144|gb|EGH58404.1| hypothetical protein PMA4326_06145 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 354

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 138/322 (42%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTMLYKNVETGQLDIAGYLAEFKDLLPHSIQALLDRLGMGDLEGLRDKITKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W   +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFISSW 340


>gi|199596913|ref|ZP_03210346.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229553740|ref|ZP_04442465.1| permease [Lactobacillus rhamnosus LMS2-1]
 gi|258507710|ref|YP_003170461.1| membrane protein [Lactobacillus rhamnosus GG]
 gi|258538898|ref|YP_003173397.1| membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|199592046|gb|EDZ00120.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|229312911|gb|EEN78884.1| permease [Lactobacillus rhamnosus LMS2-1]
 gi|257147637|emb|CAR86610.1| Conserved membrane protein [Lactobacillus rhamnosus GG]
 gi|257150574|emb|CAR89546.1| Conserved membrane protein [Lactobacillus rhamnosus Lc 705]
 gi|259649057|dbj|BAI41219.1| putative transporter protein [Lactobacillus rhamnosus GG]
          Length = 388

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 114/336 (33%), Gaps = 6/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I ++    + FL     P + A I+ + + PI +    K          +  + ++ L +
Sbjct: 37  IAWVFQPVVDFLGIIAPPFIFAGILFYLTVPIINRLE-KAGLHRGLAIGLLFIVLISLLV 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             LL        ++  +V                L+D       + L    L+   +   
Sbjct: 96  WGLLRFIPAVSNQITSIVDSAPQIFTEIGKWLDDLND-----KQNILSQHDLNEIANEVQ 150

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T  +   +            I  +  ++I    I LFF  +DG   +  +  +    
Sbjct: 151 TFFTGKQGAFVTGTISQLQNLIGIVGNVVVTISTAPIILFFMLKDGDKFTPMILQIVPTK 210

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K++   + + + S   G   +A+   ++    Y + G+   +  G++   + +IP
Sbjct: 211 LRRSVKQMLHEMNEKVGSYVQGQITVALCVAVMFMIGYSVIGLRYGLIFGLLACPLNLIP 270

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + +    +      + +   IE  I  + + P ++G  ++L  +     
Sbjct: 271 YFGSALAMIPPLIMGALTSPRMILAVIVVFFIEWLIETQLISPLVMGSKLELHPITIVVV 330

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      GL+G+ +G    A++ ++        ++
Sbjct: 331 LLTAGNLFGLVGVILGIPGFAVLKIVVTRFFSWYQQ 366


>gi|237797235|ref|ZP_04585696.1| hypothetical protein POR16_00180 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331020085|gb|EGI00142.1| hypothetical protein POR16_00180 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 354

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 139/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRRLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQALLDRLGMGDLEGLRDKITKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G++ G  +W   +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGMLGGFIFWALDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVILGLFGVFVIGLVDNVLRPVLVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLIAALFISSW 340


>gi|306829383|ref|ZP_07462573.1| membrane protein [Streptococcus mitis ATCC 6249]
 gi|304428469|gb|EFM31559.1| membrane protein [Streptococcus mitis ATCC 6249]
          Length = 369

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 110/341 (32%), Gaps = 6/341 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           II   +  +     P L      + + PI +    + + +     ++   +++   +V +
Sbjct: 30  IITPFVTVINTIMIPFLLGGFFYYLTNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS  P            +        LS 
Sbjct: 90  VYLLPILINQLTSLIISSQNIYSRLQDLVIDLSMNPIFQNID------IQKTIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +               L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSLGSVLSALFSTILILIMTPVFLIYFLLDGNKFLPMLERTVLKHDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               + + +   +     G+ I A+  G +    Y + G+   +   + + I  +IP   
Sbjct: 204 NLTSLLKNLNATVARYISGIAIDAVIIGCLAYVGYSVIGLKYALVFAIFSGIANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   +  +        ++  I   +    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANVFTDPQRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G++G+ +     +++  I K      + +KE     
Sbjct: 324 SSNIYGVIGMVVAVPSYSILKEITKFFAKLYENHKEAKEQE 364


>gi|229591908|ref|YP_002874027.1| putative transmembrane protein [Pseudomonas fluorescens SBW25]
 gi|229363774|emb|CAY51192.1| putative transmembrane protein [Pseudomonas fluorescens SBW25]
          Length = 357

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 123/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +    + ++ V ++ L     P L AL++ +   P+      K   S T+  V
Sbjct: 1   MADTRRWVWLGGVVLLCVFVFLLHSILTPFLVALLLAYLFDPVVDRLE-KAGLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   +    +L L      ++  L                  +    G+       
Sbjct: 60  AVFALFTLIITALVLVLVPMLAKQLFRLYELAPQMLDWLQHTAMPWAQAKLGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I       T+ +  I   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 ----DKVKAAISEHMGQTTDIVGVILSQATASSLALIGWLTNLVLIPVVAFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++ SL           ++    +V+ +   G  ++ +  G++  +     G+   + +
Sbjct: 176 MAKIRSLLPRNREERIVSLAEECHEVLGAFVRGQLLVMLALGIIYAAGLMAIGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G+I  + A++P    +     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GLIAGLAAIVPYMGFVIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHVHDLYKDSE 347


>gi|126642639|ref|YP_001085623.1| PerM family permease [Acinetobacter baumannii ATCC 17978]
          Length = 370

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 117/326 (35%), Gaps = 6/326 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              P + A  + +   P+    + K +        I  + +     V L +L      ++
Sbjct: 1   MVIPFIGAFFLAYLFSPLVEVLV-KIKIPRWLAISIVFIGIGVTLTVALWYLVPLIWKQL 59

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
                 +             L  I       ++        +++    +T    + I  +
Sbjct: 60  VYARDSIPAGIHWINA--ELLPWISSTFHVQQMEIDTDQMSKAVMDYVQTNYSADSIQAV 117

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               ++ G+ F+    +++ + I  F+F  D   + Q L  L    + A   +I R    
Sbjct: 118 LLKLAQSGLNFIQIGGTVVLIPIIAFYFLLDWDRMLQNLRRLIPRPYEATTLQIVRECHS 177

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           V+ +   G  ++ +  G+V      L G+   + +G++  + ++IP          ++  
Sbjct: 178 VLGAFVKGQFLVMLLLGVVYAVGLQLIGLEVGLIIGMVAGLASIIPYLGFAVGIIAAVIA 237

Query: 270 LIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            +     +  +   + +   I   +    L+PFL+G  I L  +   F ++ G +  G L
Sbjct: 238 SLFQFGMDWTHLLLVGVVFMIGQAVEGYILQPFLLGDKIGLSPVAVVFAVLAGAQLAGFL 297

Query: 327 GLFIGPVLMALIAVIWKESIMAIKEN 352
           G+ I   + A+I V+ K      + +
Sbjct: 298 GMLIALPVAAVIVVLLKHLRENYERS 323


>gi|260459332|ref|ZP_05807587.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259034886|gb|EEW36142.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 663

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 20/336 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LYF +  F P+  AL++ F   P+ S+   +         + + +         L F  +
Sbjct: 44  LYFGREVFLPIAIALLLTFALAPVVSAL-KRIGIPRLAAVISSVLGTFAA----LAFFSF 98

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++ EL   V L   + +   R L +   G       T  +          E     
Sbjct: 99  IVVTQVGELAQNVSLYQTNILAKVRSLKETGVGGGIIARLTGVIERVGQEINKQEPAQPA 158

Query: 144 NGI-------------DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                           +             +    S   +I+ + F   +   +  +   
Sbjct: 159 ASQPQREPVPVEIVSHERPLEILQNLIAPLVSPLASAGLIIVVVIFMLLEREDLRDRFIR 218

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L  +       +  +   K +    L   ++ I   + +    W+ G+P+ +  G++   
Sbjct: 219 LVGYGDLHRTTEALQDAGKRLGRYLLMQLVVNILYAVPISIGLWILGIPNALLWGLLALA 278

Query: 251 MAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +P   P+    + ++L +                 I   I    + P+L G    L 
Sbjct: 279 LRFVPYIGPVIGALLPLFLALAVAPGWSLLLWTAALFVIMEVITGNVIEPWLYGSRTGLS 338

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L      +      G LGL +   L   + V+ + 
Sbjct: 339 PLAVIVAAIFWTWLWGPLGLVLSTPLTVCLVVLGRH 374


>gi|159900573|ref|YP_001546820.1| hypothetical protein Haur_4060 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159893612|gb|ABX06692.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 404

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/356 (9%), Positives = 110/356 (30%), Gaps = 11/356 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    ++++   L+       P +  L+  +   P+ +              ++  +
Sbjct: 21  RWTITAFAIWLVAWLLWRTGNQLLPFVVGLVFAYLLLPLVNKLERW--IPRWAAILVVYI 78

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +L++    + ++      +    ++ +                +   + + 
Sbjct: 79  VGLGIVTGSILYIVPPAIDQVNGFGKSLPEFYKNTLEPKINEGLKWYRSEVPDEIQEDID 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD---YCLSIIFMIIALFFFYRDGFSIS 185
              S  I +     TN ++           +      +    + +   LF+   D     
Sbjct: 139 KQVSKGITTLKENATNYVETGVNGILNGLGVIFQTIIFLAGFLIIPFWLFYVLLDERKGK 198

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG------VP 239
             L  +           +  I  +V  +   G   + +   ++     W+        +P
Sbjct: 199 AALIRMIPKAVRTDVLTVLSIFDRVFSAYIRGQLTLGLIIAIMSYIGLWIVDLVMPGEIP 258

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L ++     +IP   PI     ++ + +  ++     +     +   I +  L P 
Sbjct: 259 YKLLLALVAGFTELIPVIGPIIGAIPAVIVGLTTSLPMGLVVAGLYIVIQQIENNFLVPR 318

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++G  +++        LV      GLLG+ I   + A+    ++     +++  + 
Sbjct: 319 IIGAIVEIHEAVLMLLLVIAGTVSGLLGVIIFAPMAAVARDSYQYITGRLRQPNDP 374


>gi|306840623|ref|ZP_07473375.1| transmembrane protein [Brucella sp. BO2]
 gi|306289361|gb|EFM60597.1| transmembrane protein [Brucella sp. BO2]
          Length = 351

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L L G + + +VD  LRP LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVLVGVLVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|49475709|ref|YP_033750.1| permease protein [Bartonella henselae str. Houston-1]
 gi|49238516|emb|CAF27748.1| permease protein [Bartonella henselae str. Houston-1]
          Length = 403

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 43/328 (13%), Positives = 105/328 (32%), Gaps = 11/328 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   ++ +        P ++ +++ +   PI      K      F  ++ T
Sbjct: 47  KQIFFWLGALIFFILFMLVFGSILLPFVAGIVLAYFLNPIVQLLE-KFRIRRVFGTILIT 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + ++ +F+  L+ L      ++++ ++  + +                   +      + 
Sbjct: 106 LFIVVVFVAALIILIPIISWQIQQFMNDGLPVYINRIQTFFVEHDFDWVRRYFGSDPNEL 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S+ + L   S     ++ I  +     + G   ++     +   +  F+   D   +  
Sbjct: 166 QSNIKGLLGQS-----SDFITSLLNSLLKSGKSLVNIVSLFVVAPVVAFYMLLDWPRMVT 220

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DSL         + I   + + I     G     +  G        +  +   + +G+
Sbjct: 221 AVDSLIPRDHLETVRSIFHEMDRAIAGFVRGQGTACLILGGYYAIGLTITELNFGLLIGM 280

Query: 247 ITAIMAMIPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ +P    +S       V+       N      + +   I  FI    L+P LVG
Sbjct: 281 FIGLISFVPYIGTMSGFLLSVGVAWVQFYPNNWGWIIVVMVIFLIGQFIEGYILQPKLVG 340

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             + L  +   F L       G  G+ I
Sbjct: 341 SSVGLHPVWLMFALFAFSSLFGFTGMLI 368


>gi|330015775|ref|ZP_08308269.1| hypothetical protein HMPREF9538_05993 [Klebsiella sp. MS 92-3]
 gi|328530551|gb|EGF57419.1| hypothetical protein HMPREF9538_05993 [Klebsiella sp. MS 92-3]
          Length = 369

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 135/337 (40%), Gaps = 3/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    ++  + L     L  +++ +L A I+     P  +    +  E +   A++  
Sbjct: 7   TKGFFILIVFIVTLAFFDVLSPYYSAILWAAILAVIFNPDKNKPRPRLGERNGLAALMTI 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  +   PL  +      E+  + SK+   +     V   L     G   S L   +L
Sbjct: 67  VIICLIVFTPLAIILSSLAYELNLVYSKLQHNDTQFPTVVASLFAHLPGWARSFLADHNL 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q ++          G  ++   A   G     + +S   M+  LFF  +DG  +   
Sbjct: 127 DSAQQIQQQLSDAALK-GGQYLAGSAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLL 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +      V R+T  G   +A+ +G + G A+W+AG+   +  G +
Sbjct: 186 ILESLP-LSSYVKQHLFAKFAAVARATVKGTVAVALAQGALGGFAFWIAGLDGSILWGAL 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A +++IP     I +   +IYL   G ++    +  +  I + +VD  LRP LVG   +
Sbjct: 245 MAFLSLIPAVGSAIIWVPAAIYLFATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTR 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 305 MPDYLILIATLGGMEIYGINGFVIGPLIAALFIACWN 341


>gi|325202087|gb|ADY97541.1| putative membrane protein [Neisseria meningitidis M01-240149]
 gi|325208159|gb|ADZ03611.1| putative membrane protein [Neisseria meningitidis NZ-05/33]
          Length = 356

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLIFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLISFMQNTL-----LPWLKNTIGGYMEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|93006679|ref|YP_581116.1| hypothetical protein Pcryo_1855 [Psychrobacter cryohalolentis K5]
 gi|92394357|gb|ABE75632.1| protein of unknown function UPF0118 [Psychrobacter cryohalolentis
           K5]
          Length = 368

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 119/345 (34%), Gaps = 7/345 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + + +V LY +     P + A ++ +   P+                +I   
Sbjct: 11  RRLFIVVAIVVAMVLLYLMMPVIVPFVFAFVLAYLFNPLVKRLSKY--IKRWIAIIIVYS 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++    ++ L +L      +++     +         V R        +   EL +K  S
Sbjct: 69  TITLSMVLLLWWLIPTLWHQLQAAWDYLPQLLTWYNEVVREWFASNSRIRLPELESKGFS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++L    +T  K      +        M F++    I+ + I  F+F  +        
Sbjct: 129 --ETLVEYMQTNYKFEDAGTMMSQILASSMNFINNAGLIVLVPILTFYFLFNWEQRLHTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I++   + + +   G  ++ +  G +      L G+   + +G++ 
Sbjct: 187 KMAIPAPYCKKVIQIAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGLIIGMVA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          +I   +     +    + +     I        L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGFVAAIIACLFQFGLDWTYLSLIAGAFLIGQAAEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L  L   F ++ G   +G +G+ I   + A++ V+++      +
Sbjct: 307 GLSPLWVIFSVLAGASLLGFVGMLIALPVSAVLNVLFRHFYTHYQ 351


>gi|323492363|ref|ZP_08097516.1| hypothetical protein VIBR0546_11014 [Vibrio brasiliensis LMG 20546]
 gi|323313410|gb|EGA66521.1| hypothetical protein VIBR0546_11014 [Vibrio brasiliensis LMG 20546]
          Length = 354

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 112/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +           +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVVQMS-RLGIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    L IV +  L      ++  L++ +             L      +   +
Sbjct: 69  AVILVILGFTSLMIVAIFGLVPTIWQQVGNLINDIPTMYIGLQGFIAELPQRFPELEHFQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVEPLVTNAKNQAIGMGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          K+   + + I +   G  +  +  G V    + L  +   
Sbjct: 181 DEMIEMASGVLP-RNRRLATKVWHEMNEQISNYIRGKVMEILIVGGVSYITFALLDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLTPQFYWLLVAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L  L+  +W       +E  
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHEEETP 353


>gi|66046439|ref|YP_236280.1| hypothetical protein Psyr_3210 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257146|gb|AAY38242.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 354

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 140/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWMLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAIYFLLSGMIWQGVVLGLFGVLVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|330954547|gb|EGH54807.1| hypothetical protein PSYCIT7_24977 [Pseudomonas syringae Cit 7]
          Length = 356

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 139/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSIQALLDRLGMGDLEGLRDKIAKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFISSW 340


>gi|81429080|ref|YP_396080.1| putative transport protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78610722|emb|CAI55773.1| Putative transport protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 368

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 108/317 (34%), Gaps = 7/317 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ A ++ +   P+ +    K + S  +   I  +      I  +       
Sbjct: 40  FISTLFGPIIGAGLLFYLFNPLINLL-GKLKISRKWAIAIIFIVFFGGIIFIVALAIPQL 98

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ ++V+ +         +   +S  P            ++   +   L  + +  N 
Sbjct: 99  IHQVTQVVTNLPDYVHRLQDMIDKISTNPHLKNID------VNKYVNQLDLKPSKIAENI 152

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +                  + +  + I LF+  +DG  +   +  +    +      + R
Sbjct: 153 MKSFTSGFGSMIGAVTSVTIGVFTVPIMLFYMLKDGHRLIPNIQKMLPDRYNDQVADLLR 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   I +   G  +  +  G+     Y + G+P    LG I  +  +IP   P    A 
Sbjct: 213 KMGATISAYIGGQALECLFVGVFTFIGYLIIGMPYAYLLGFIAGVSNIIPYLGPYIGIAP 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +I     + +   I   I    + P ++G  + +  L     L+      G+
Sbjct: 273 ALIISLSISIPKTIMVIVVVVIVQQIDGNLIYPNVIGRSLDIHPLTIIIILLVAGNIYGI 332

Query: 326 LGLFIGPVLMALIAVIW 342
           LG+ +     A+   + 
Sbjct: 333 LGMILAIPFYAVTKTVV 349


>gi|229085673|ref|ZP_04217903.1| hypothetical protein bcere0022_22790 [Bacillus cereus Rock3-44]
 gi|228697630|gb|EEL50385.1| hypothetical protein bcere0022_22790 [Bacillus cereus Rock3-44]
          Length = 348

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 115/342 (33%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+     +K +   +   ++  V ++ L  
Sbjct: 12  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEAK-KVPRSLAILLLYVFIITLAA 70

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +L   +    + G    + LS         E              
Sbjct: 71  VAIGVVVPTISQQLMDLAKNMPTYIKEGKIYIQDLSHH----KLFEWLATQDYVSIETIE 126

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +         + +   A+    I  +  L +  +   LF+ ++DG +   +  S     
Sbjct: 127 KNAIEYLKEIPNTVTSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPES 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      I +   + + +   G  ++ +  G      Y +  +P    LG+I A   +IP
Sbjct: 187 YREEGLHIIKETGETLSAYIQGQALVCLFIGAFTFIGYVIIDLPYAFVLGIIAAFTNIIP 246

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 247 NLGPFIGAAPAVIVALFVSPVQAAWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVL 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  +    
Sbjct: 307 ILGVGNFAGIVGMILAVPAYAVTKTVVSNLVRLFKMKRNNRK 348


>gi|296128795|ref|YP_003636045.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296020610|gb|ADG73846.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 420

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 89/299 (29%), Gaps = 13/299 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P+  +         +  A  A V ++ L    L       +  + EL  +        +
Sbjct: 66  SPVVRALQRYVRLPRSAAAGTALVGLIALVAGLLTLAGRSIVNGIAELWEQARSGFDELL 125

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                        W SE   +  +      +        +    +   A   G+      
Sbjct: 126 T------------WLSEGPLQLGTGEIEDYLGQVQDAAASSGQQLVSGALSVGVTVGHVA 173

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
              +  +    FF  DG  I   L  L          +  R     + +      ++A  
Sbjct: 174 AGTLIALFCTLFFLIDGRGIWAWLVGLMPRGSRERVHQAGRRGWVTLGAYTRTQILVAAV 233

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFL 283
           + + +G       +P  V L V+    + IP    I + +   +  L+     +A  +  
Sbjct: 234 DAVGIGIGAAFLQLPLVVPLAVLVFFGSFIPFVGAIVTGSIAVLVALVTQGWVSALIMLG 293

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              +   +    L+PFL+G  + L  +     +  G    G++G      L AL+  + 
Sbjct: 294 IVLLVQQLEGHVLQPFLMGHAVSLHPVAVLLVVTTGSLVAGIVGALFAVPLAALVNTVV 352


>gi|21232218|ref|NP_638135.1| permease [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66767653|ref|YP_242415.1| permease [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113976|gb|AAM42059.1| permease [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66572985|gb|AAY48395.1| permease [Xanthomonas campestris pv. campestris str. 8004]
          Length = 388

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 124/349 (35%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  +L  +  L     P + AL++ +   P+      +   S      +  +
Sbjct: 14  RRLKWAAVIVGVLWVVSLLSPILTPFVLALLLAWLGDPLVDRIE-RAGRSRNMAVTLVFI 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L+ L      ++  L+  +       I                EL      
Sbjct: 73  LMVLLVVLALMILVPMMERQIMTLIDALPQMRDWAIGTA---IPWLQRRTGVELMGWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S              + SR G   + + +++  + I  F+F RD   + +++
Sbjct: 130 ERLIEWIRSHWEQAGGVAKTFFGYVSRSGFAMVTWVINLALLPILAFYFLRDWDRMVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++    +     +++     V+     G  ++ +  G +  +   + G+   + +G+I 
Sbjct: 190 AAVIPRAYIGTVSRLALESNDVLGGFIRGQFLVMLALGAIYATGLSIIGLNLGLLIGIIA 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++ IP     +   +++   I      ++     + +   +   +    L P +VG  
Sbjct: 250 GFISFIPYLGATTGIVLALLAAIVQAQGFDLKLLIGVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +     ++ 
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVANVLLRYAHERYTQSD 358


>gi|262283223|ref|ZP_06060990.1| membrane protein [Streptococcus sp. 2_1_36FAA]
 gi|262261475|gb|EEY80174.1| membrane protein [Streptococcus sp. 2_1_36FAA]
          Length = 374

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 111/339 (32%), Gaps = 6/339 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  +     P L A  + + + P+        + +     ++    +    ++ +
Sbjct: 30  LITPVISVVNTILIPFLIAGFLYYIANPLVVFLEKYLKLNRVLGVLLTLTILFGSIVLAV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L++       +       L+  P     +      +        LS 
Sbjct: 90  IYLLPILVTQLTSLINSSQNLYSYVYSWVNDLAQNPVFKNLN------IQSTLQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++    II   I L +F  DG  +   L+         
Sbjct: 144 IDILRNILNGVTNSLGSVVSAVINTIFIIIMTPIFLVYFLLDGHKLLPMLERSILKRDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               + + +   +     G++I A+  G +    Y   G+   +   + +++  +IP   
Sbjct: 204 NISSLLKNLNATVSRYISGISIDAVIIGCLAYIGYSTIGIKYALVFAIFSSLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I      +        ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMIISHAFTDPKRMLIAVIYMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                G++G+ +     ++I  I K        +KE   
Sbjct: 324 SSNIYGIIGMIVAIPTYSIIKEIVKFLANLYDNHKEAQE 362


>gi|46907143|ref|YP_013532.1| hypothetical protein LMOf2365_0930 [Listeria monocytogenes str. 4b
           F2365]
 gi|47092118|ref|ZP_00229911.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|226223528|ref|YP_002757635.1| membrane protein [Listeria monocytogenes Clip81459]
 gi|254852403|ref|ZP_05241751.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254931293|ref|ZP_05264652.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|254993201|ref|ZP_05275391.1| membrane protein [Listeria monocytogenes FSL J2-064]
 gi|300764118|ref|ZP_07074113.1| hypothetical protein LMHG_10093 [Listeria monocytogenes FSL N1-017]
 gi|46880410|gb|AAT03709.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47019558|gb|EAL10298.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|225875990|emb|CAS04696.1| Putative membrane protein [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605710|gb|EEW18318.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293582843|gb|EFF94875.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|300515108|gb|EFK42160.1| hypothetical protein LMHG_10093 [Listeria monocytogenes FSL N1-017]
 gi|328467003|gb|EGF38102.1| membrane protein [Listeria monocytogenes 1816]
 gi|328475390|gb|EGF46159.1| membrane protein [Listeria monocytogenes 220]
          Length = 378

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQDLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDLDIKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGRFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|328954356|ref|YP_004371690.1| protein of unknown function UPF0118 [Desulfobacca acetoxidans DSM
           11109]
 gi|328454680|gb|AEB10509.1| protein of unknown function UPF0118 [Desulfobacca acetoxidans DSM
           11109]
          Length = 409

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/352 (18%), Positives = 147/352 (41%), Gaps = 2/352 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + + I+  S   +K +   +  AL++ F S P+Y + +          + +  +
Sbjct: 40  KTFFGVLTVVILYFSYLIVKPYLVEIFLALVLFFISKPLYQAILGFCRGWRGISSALTCL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    I+P+L L      +  +L + +      G         +      ++     ++
Sbjct: 100 LLALFIILPILMLAGIIASQALDLYNLISAGLHSGTLWQVLTKKLAFLEDYAKHLNLPVN 159

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                          +   FI   +      F  +  S++ ++   FF + +G     ++
Sbjct: 160 LENLKIEEVIRTALISASQFIYNNSIGLVKGFTTFLFSLLLILFITFFCFLEGDDFIDEI 219

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   L  A+  +I   V   IR+T  G  I+AI +G++ G  ++  GVP     G + 
Sbjct: 220 KRLSP-LDQAHNDEILGDVENTIRATIRGTVIVAIIQGILGGLGFFCFGVPRAAFWGTVM 278

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              ++IP     I +   +++L  +G+I+ +  + LWG + +  +D  ++P+L+ G  + 
Sbjct: 279 IPASVIPVIGAAIIWLPAALFLFFQGHIWQSLGMVLWGGVFIGSIDNLVKPYLMKGARQT 338

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           P + T F ++GG+   G++G  +GP++++ +  + +     I    +   SN
Sbjct: 339 PTIFTLFAIMGGITYFGMIGFILGPLILSFLLSVLEIYRKTILIRSQTPPSN 390


>gi|217978311|ref|YP_002362458.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
 gi|217503687|gb|ACK51096.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
          Length = 653

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 98/363 (26%), Gaps = 25/363 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+       +   MI  + +++LY  K  F P+  A+++ F                   
Sbjct: 16  RDATRTLDTLATLMISALCILALYVAKSVFVPIAIAVLLSFVLSLPVRLLRRIGLNRVVA 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + ++   S+   F +           ++ EL   +             L ++       E
Sbjct: 76  VLIVVIASLAVTFAISAA-----LTRQVTELAVDLPKYQATITSKAGSLREMVFANGLME 130

Query: 122 LWTKHLSHPQSLKILSETFLKT------------------NGIDFIPRFASRFGMIFLDY 163
                     +L    +                                        L  
Sbjct: 131 KGASIFKGLGALGQKKDDAASAPPALGRGDEPRPIPVEVREAEPSPLSMLQTIVGTALSP 190

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
             +I  ++I + F       +  +  SL                   +   FL  T++  
Sbjct: 191 LETIAIVVIFVIFILLQREDLRNRFISLVGTRDLQRTTVAMNDAAGRLSRFFLAQTLLNA 250

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCL 281
             G+V+    +  GVP  +  G+I  +M  +P    I      V++   +      A   
Sbjct: 251 AFGVVVAVGLYAIGVPGPLLFGMIGFLMRFVPYIGAIVAAGLPVALAAAVDPGWTMALET 310

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +    V + + P L G    L  +             G +GL +   L   + V+
Sbjct: 311 LALFLVLELAVGQFIEPLLYGRNTGLSPIAVVVAATFWTWLWGPIGLVLATPLTVCLVVL 370

Query: 342 WKE 344
            + 
Sbjct: 371 GRH 373


>gi|327481531|gb|AEA84841.1| transporter, putative [Pseudomonas stutzeri DSM 4166]
          Length = 365

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 121/344 (35%), Gaps = 8/344 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           TM +    +    + + +  +Y L     P L  +++ +   P+          S T+  
Sbjct: 2   TMNDSNRWLWLAGLLLCIWLVYLLTPILTPFLIGVLLAYLGDPLVDRLERW-GLSRTWGV 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +        L +V LL L      ++  L     LA      V         G+  +   
Sbjct: 61  IAVFALFSLLLLVLLLVLVPMLGKQLVRLYQLAPLALDWLQHVALPWVQTQFGLEDNFWQ 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L         +     T+ +  I   A+   +  L +  +++ + +  F+  RD   
Sbjct: 121 LDRLKA----AFTAHLGSTTDVLGMILSRATASSLALLAWIGNLLLIPVVSFYLLRDWDL 176

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I  +L SL          ++     +VI +   G  ++ +   ++  S   L G+   + 
Sbjct: 177 IMLKLRSLLPRKREGMVVRLMSECHEVIGAFLRGQLLVMLALAIIYASGLMLVGLELGLL 236

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGN---IFNATCLFLWGAIELFIVDKTLRPFL 300
           +GV+  + +++P    +     ++   +       +    + +   +   +    L P L
Sbjct: 237 IGVLAGLASIVPYMGFVVGIGAAVIAALFQFGLAPYPLIGVAVVFTVGQMLEGMLLTPLL 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  I L  +   F ++ G +  G  G+ +   + A+I V+ + 
Sbjct: 297 VGDRIGLHPVAVIFAVLAGGQLFGFTGVLLALPVAAVIMVLLRH 340


>gi|228991726|ref|ZP_04151666.1| hypothetical protein bpmyx0001_24740 [Bacillus pseudomycoides DSM
           12442]
 gi|228768049|gb|EEM16672.1| hypothetical protein bpmyx0001_24740 [Bacillus pseudomycoides DSM
           12442]
          Length = 357

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 120/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L A+ + F   P+     +K +   +   ++  V ++ L  
Sbjct: 21  ISFLFQPIGIFISTLFFPILIAMFLYFIFNPVLVFLEAK-KVPRSLAILLLYVFIITLAA 79

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V +  +      ++ +LV  +    + G    + LS      W +      +   +   I
Sbjct: 80  VAIGVVVPTISQQLMDLVKNMPTYIKEGKVYIQELSHHRLFEWLATQDYVSIETIEKNAI 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +       I   A+    I  +  L +  +   LF+ ++DG +   +  S     
Sbjct: 140 EYLKEIPNT----ITSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSFLPES 195

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +I +   + + +   G  ++ +  G      Y +  +P    LG+I A   +IP
Sbjct: 196 YREEGLRIIKETGETLSAYIQGQALVCLFVGAFTFIGYVIMDLPYAFVLGIIAAFTNIIP 255

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I        + P ++   + +  L     
Sbjct: 256 NLGPFIGAAPAVIVGLFVSPMQALWVIVIVTIVQQFESNIISPRIMSSKLNIHPLTIIVL 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           ++G     G++G+ +     A+   +    +   K  +    
Sbjct: 316 ILGVGNFAGIIGMILAVPAYAVTKTVVSNLVRLFKMKRNNRK 357


>gi|209695807|ref|YP_002263737.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009760|emb|CAQ80066.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 355

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 116/351 (33%), Gaps = 12/351 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+ +  +++YF     AP+L A+++ +      +    K     T 
Sbjct: 10  KRRFSDPHAVSLVAILVVGFITIYFFGHLIAPLLVAIVLAYLLEWPVAKLS-KFGLPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +  + L ++ +  L      ++  L++ +         +   L D        +
Sbjct: 69  AVMFVVLLFISLMLLAVFGLVPTIWNQVGNLINDIPSMFNGLHSLLSSLPDRYPEFIQPQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L   +   +     +    +  +   A           + +I + + +FF  +D 
Sbjct: 129 SIDTLLDTVRGKVLGMGETMVKGSLSSLISLA--------ALGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + + ++          K+   + + I +   G  +  +  G V  + +++  +   
Sbjct: 181 DEMVRTMSNILP-KNRRLATKVWVEMNEQISNYIRGKVVEILIVGTVSYATFFIMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP     + T       L   G   +   L L  AI   +    L P 
Sbjct: 240 LLLAVMVGFSVLIPYIGAAAVTVPIAIVALFQWGLTPDFYWLILAYAIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L    + L  +     ++      G  G+F    L  L+  +WK      +
Sbjct: 300 LFSEAVNLHPVAIIVSVLVFGGLWGFWGVFFAIPLATLVKAVWKALPATDE 350


>gi|238060754|ref|ZP_04605463.1| hypothetical protein MCAG_01720 [Micromonospora sp. ATCC 39149]
 gi|237882565|gb|EEP71393.1| hypothetical protein MCAG_01720 [Micromonospora sp. ATCC 39149]
          Length = 412

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 111/344 (32%), Gaps = 16/344 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  ++ + + + +    G    V+ AL +     P      S     +       T++
Sbjct: 85  GALGVLLAYAVFLGVRNSAGILVLVVIALFLAVGLNPAVVRLRSW-GLPNGLAVTAVTLT 143

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L +  L+ L    + +  + V ++    +                            
Sbjct: 144 VLLLIVGGLVALVPPVVTQSGQFVEQLPSYVEELRR---------------NKAVNDFVV 188

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +    +     + I            +        + +++   +F      + +   
Sbjct: 189 RYDVMDKVKAAADADTIGRALGGVLGGAQLIFGTVFRALTVLVLTIYFLAYFDRLRRVGY 248

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L         + I   +   + +  +G   IA+  G+       + G+P   AL V+ A
Sbjct: 249 ALVPRSRRRRVRLIGDEILAKVGAYMVGALGIAVLAGVTTFVFALVVGLPYPFALAVVVA 308

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP         V   +    ++        +  +   + +  + P ++   +++  
Sbjct: 309 VADLIPQIGATLGAVVVSLVGFATDLPVGIACVAFFVVYQQVENYLIYPKVMRRSVEVNE 368

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +      + GV  MG++G  I    +A + +I +E ++  ++ +
Sbjct: 369 VAALLAALLGVSLMGVVGALIAIPTVAALQLILREVVLPRQDRR 412


>gi|258650461|ref|YP_003199617.1| hypothetical protein Namu_0195 [Nakamurella multipartita DSM 44233]
 gi|258553686|gb|ACV76628.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 486

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 108/341 (31%), Gaps = 15/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +I +I  + L  ++     +  A ++     P+ S+   +          +  + ++
Sbjct: 160 LGVLIAYITFLVLDSIRDTLVMIAIATLLAIGLDPLVSAMTKR-GLRRGAGVAVVFLGLL 218

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    +  +    + E+   V+ V                       ++          
Sbjct: 219 LVIAAAIYAIIPPIINEVGSFVATVPTLINDLQT--------------NDTVQGLDQRFG 264

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L+ L  + +  +                      ++ ++I   +F      I      L
Sbjct: 265 LLEALRNSNIVQSLGSGAAGGILSASFTVATVFADLLIVLILTLYFLAGFPRIKAAGYRL 324

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +   + K +     G TIIAI  GLV G    + G+P   A+G+  A++
Sbjct: 325 VPASRRVRVSDLGDRILKQMGGYLSGATIIAIQAGLVAGIFSSIIGLPYPWAIGLGAAVL 384

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   PI        +     +       ++   +       L P ++   + +    
Sbjct: 385 DFIPVVGPIIVGVSITLIGFTQGLGIGIISGVFYLCQHLFEAYWLYPRVMRRTVNISTGG 444

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               ++ G   +G+ G  +   + A I +I +E IM ++E 
Sbjct: 445 VVVAILIGASLLGVTGAILAVPVAAAIMLIVREVIMPMQER 485


>gi|220913074|ref|YP_002488383.1| hypothetical protein Achl_2329 [Arthrobacter chlorophenolicus A6]
 gi|219859952|gb|ACL40294.1| protein of unknown function UPF0118 [Arthrobacter chlorophenolicus
           A6]
          Length = 436

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 110/337 (32%), Gaps = 11/337 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
              ++             +++AL I     P+     ++ +       +++   ++   +
Sbjct: 110 AALLVYWIGSHTTQLLLWIVAALFIALGLEPVVKWLENR-KIPRPAGILMSVAVLILAVV 168

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L    + ++ E+V +             W+ D         L  +     +    
Sbjct: 169 GFFATLIPTIVQQVTEIVQQAPT----------WVRDFMNSDLFRTLDDQFGVRDRIADE 218

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L++     N +  I      FG    +     + +++   +F     ++ +    L    
Sbjct: 219 LNKFVNDPNAMGGIAGGVVGFGSTVANGLFGALIVLVLSLYFLAALPAMKKWGYRLAPRS 278

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + +S  + K + +  +G   +A+           + G+P  + L  + A++A IP
Sbjct: 279 RRHRVEALSDAITKSVGNYVIGQACVALLNATFAFIVMSIVGIPFALLLAFVVALLAFIP 338

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +    V + + +      A    +     L      + P ++   + +P       
Sbjct: 339 LVGAMIAGVVVVLIALTVGWQTAAIYAICYFAYLQFEAYFISPRIMQKAVAVPGAVAVIS 398

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++ G   +G+LG  I     A I ++ KE  +  ++ 
Sbjct: 399 VIAGGSLLGVLGALIAIPTAAAILLLIKEIYIVRQDQ 435


>gi|119960690|ref|YP_948306.1| permease [Arthrobacter aurescens TC1]
 gi|119947549|gb|ABM06460.1| putative permease [Arthrobacter aurescens TC1]
          Length = 430

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 110/339 (32%), Gaps = 14/339 (4%)

Query: 17  MFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           + I L   Y           +++AL I     P+     S+K        +I+  +++  
Sbjct: 102 VGIALAVFYIASNTTQLILWIVAALFIALGLDPVVRWLESRKVPRP-AGILISVSALVLA 160

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                  L    + ++ E+V +             W+       +     ++     +  
Sbjct: 161 VAGFFATLIPTIVEQVSEIVRQAP----------EWIRGFLDSDFFRNADSQFGVRDRIT 210

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L +       +  I      FG    +     + +++   +F     S+ +    L  
Sbjct: 211 TELDKFVKDPEAMGGIFGGVVGFGSTVANGLFGSLIVLVLSLYFLAALPSMKKWAYRLAP 270

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + +S  +   + +  +G   +A+   +       + G+P  V L  + A++A 
Sbjct: 271 RSRRPRVEALSEAITDSVGNYVIGQVCVALLNAIFAFILMTILGIPFSVLLAFVVALLAF 330

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP    +    V I + +      A    +     L      + P ++   + +P     
Sbjct: 331 IPLVGGMIAAVVVILVALTAGWQTAVVYAIAYFAYLQFEAYFISPRIMQRAVAVPGAVAV 390

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++ G   +G+LG  I     A I ++ KE  +  ++ 
Sbjct: 391 ISVIAGGSLLGVLGALIAIPTAAAIMLLMKEVFIVRQDR 429


>gi|83949531|ref|ZP_00958264.1| membrane protein [Roseovarius nubinhibens ISM]
 gi|83837430|gb|EAP76726.1| membrane protein [Roseovarius nubinhibens ISM]
          Length = 347

 Score =  133 bits (335), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 110/341 (32%), Gaps = 14/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            +  + LV L+FL     P +    I +   P+      K   +        T+  + LF
Sbjct: 6   AVTLVFLVVLWFLGDVILPFVLGGAIAYFLDPLADRLE-KLGLTRAMAVATITLFALLLF 64

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +    + +   L        +                  +              
Sbjct: 65  VIMALLVVPTLIKQAVALFDIAPQLARDLEGFISR----------NFPQVGDGDSTLRQS 114

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +        +    +   A       ++  L  + + +  F+   D   +   +D L   
Sbjct: 115 LAVVGDTIKSKGGQLLDSAIGSVSSLINVVLLFVIVPVVAFYLLYDWDRMVAAVDDLLPR 174

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + +++ + + + S   GM  + +  G     A  L G+   + +G +  ++  I
Sbjct: 175 DHAPTVRHLAKQIDRTLASFIRGMGTVCLILGTYYAGALMLVGLQFGLVVGFVAGLITFI 234

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+  +   +    A+   I    L P LVG  + L  + 
Sbjct: 235 PYVGALVGGALAIGLALFQFWGDWVSIGLVAGIFALGQVIEGNVLTPKLVGSSVGLHPVW 294

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             F L       G +G+ +   + A I V+ + +I   + +
Sbjct: 295 LIFALSVFGALFGFVGMLVAVPVAAAIGVLARFAIQQYRSS 335


>gi|325693704|gb|EGD35623.1| permease [Streptococcus sanguinis SK150]
          Length = 366

 Score =  133 bits (334), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 117/343 (34%), Gaps = 7/343 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A V  + + ++
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLDKCRVPQKLQRGLALVLEVLILVL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSETIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              +L  +    I      F  + +   L   F+             +      +     
Sbjct: 147 RAIYLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----MLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + G    GL+G+     + A+I  + +E ++  +E K + S++
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKAEGSAS 365


>gi|312138760|ref|YP_004006096.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311888099|emb|CBH47411.1| putative integral membrane protein [Rhodococcus equi 103S]
          Length = 413

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 112/346 (32%), Gaps = 14/346 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +   ++   L  L     PV+ A+++    WP   +   +        A I  +  
Sbjct: 37  AAIAIGALVVGWILQKLWVIALPVMLAIVVSTVLWPPTRALTKR-GVPPAGAASITLLIF 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             LF   +  +    + +  EL +K     Q                W            
Sbjct: 96  FALFGGVVALIVPSVVDQAPELANKATQGIQQVQD------------WLKGPPVNLQDDQ 143

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + + T         I               +++  ++I  FFF +DG      L  
Sbjct: 144 IDTAVHAITSKLQESGTAIASGVFTGVTTAGSMVVTLFLVLILAFFFVKDGPRFIPWLHG 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       + +++   +   +        ++++ + + +G+   + GVP    L ++T I
Sbjct: 204 VSGGRAGRHLEEVLGRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFI 263

Query: 251 MAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +P        A+++ + +    +  A  +         I    L+P L    +KL  
Sbjct: 264 GGFVPIVGAFVAGALAVLVALVANGLTTALIVLAIIIAVQQIEGNVLQPVLQSKSMKLHA 323

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +     +  G    G++G F+   + A+ AV+ +     I E  ++
Sbjct: 324 VVVLLAVTAGSSLFGIVGAFLAVPVAAVGAVVIRYLGEQIDERLQE 369


>gi|257092178|ref|YP_003165819.1| hypothetical protein CAP2UW1_0541 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044702|gb|ACV33890.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 372

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 139/350 (39%), Gaps = 7/350 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +    +  +I  SL+ L+ F   ++ A ++   +WP+      +         ++ T  
Sbjct: 14  TLAVLFLCVLIAASLWILRPFLPALIWATMVVVATWPLMLRAQRRFGNRRWPAVILMTFL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMW-ASELWTKHL 127
           V+ + +VPL       +    E+       +  H    P W++D+P   W   ++W +  
Sbjct: 74  VLLILVVPLSVAIATIVGNADEITEWAKSLSSLHVQSPPAWVADVPFVGWRLEQIWQQTA 133

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   +           N   +       FG++F+ + L++    +     Y  G   +  
Sbjct: 134 TTGGTELAAKVAPYAANLTRWFVSEIGSFGLVFVQFLLTVALCAV----LYASGEKAAAG 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +   G  L     +    +  +  R+  LG+ + A+ + ++ G    +AGVP    L  +
Sbjct: 190 VRRFGYRLSGERGEGAVILAGQAARAVALGVGVTALVQSILGGIGLAIAGVPFAPVLTAV 249

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +   G  +      ++L    +    T L +W       +D  LRP L+     L
Sbjct: 250 MFMFCIAQLGPGLVLVPAVVWLYWGDHTGWGTFLLIWAIFV-GTMDNFLRPVLIKQGADL 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L    G++GG+   GL+GLF+GPV++A+   + +  I  +    + ++
Sbjct: 309 PLLLILAGVIGGMLAFGLVGLFVGPVILAVGYTLLEAWINEVPHEIDSVA 358


>gi|170759096|ref|YP_001787178.1| hypothetical protein CLK_1238 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406085|gb|ACA54496.1| putative membrane protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 364

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 108/328 (32%), Gaps = 1/328 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I   +        P   A  I +   P+   F +K +    F  +I  + V+ L I+ + 
Sbjct: 32  IYSFIKSFLSILVPFTWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFIN 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  + +L           I                    +  ++  +L     +
Sbjct: 92  TFVPKIIKNIGDLFVHSPDYINQTIQWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI-S 150

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    ++       +F    + +   +I  I  L        ++ + + +L      + 
Sbjct: 151 NLTNTFLNTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALFGGKNYSK 210

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                + V  V     +G +I ++  GL+  +      VP    +  I  I  MIP   P
Sbjct: 211 ILSFFKEVDIVFSKYIIGKSIDSLIIGLMCFAGLTTMKVPYAALISFIVGITNMIPYFGP 270

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +  + +  N   A  + ++  I        L P ++G  + L  +   F +  G
Sbjct: 271 FIGMIPAFIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIG 330

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIM 347
             T G++G+F+   + A+I +   + I 
Sbjct: 331 GGTFGVMGMFLSVPIAAIIKIYLDKYIE 358


>gi|308389313|gb|ADO31633.1| putative transporter [Neisseria meningitidis alpha710]
          Length = 356

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 17  AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMFVMVFSLILL 75

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 76  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 130

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 131 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 191 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFV 250

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 251 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 310

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 311 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 347


>gi|295397084|ref|ZP_06807196.1| membrane protein [Aerococcus viridans ATCC 11563]
 gi|294974676|gb|EFG50391.1| membrane protein [Aerococcus viridans ATCC 11563]
          Length = 425

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 117/328 (35%), Gaps = 6/328 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           ++ F++    P++ A I  + + P+ +    K    +   A++  + ++ + +  L+ L 
Sbjct: 80  AVSFIQYVSLPIIVAAIFYYLTVPLVNRIEKKGLNRTWGSAIV--LLLIAVVVTGLIALI 137

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E + L++             +           + ++   +++   L   +   + 
Sbjct: 138 PTVADEGRNLINNWDTIWSDYQSRLQSFIRGDWYDQVNMVFQSAMNNVLDLSSFNWESIA 197

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + I  +         + +    + I +     +  RDG  +   +             +
Sbjct: 198 NSAITSVSSIVGTVTKVAVAIFTAPIILF----YMLRDGHKLPTYVAQFLPIKIRKATLR 253

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   I     G  I+AIG  ++    Y + G+P  V +GV    + +IP       
Sbjct: 254 LLSDMNLQISQYIRGQIIVAIGVAIMFVVGYSIVGLPYGVIIGVAAGFLNIIPYIGSFLA 313

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I + I         + +  AIE  I  + + P ++G  + +  +     L+     
Sbjct: 314 MVPAIIVAIVVGPMMIVKVLIVFAIEQTIESRVISPQVLGSNMAIHPVTIMLLLISAGSI 373

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G+ G+ +   + A+I VI+    +  K
Sbjct: 374 FGIAGVVLVIPIYAVIKVIFNHFFVWYK 401


>gi|49611311|emb|CAG74758.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 396

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 139/355 (39%), Gaps = 6/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+   F +      +   ++
Sbjct: 38  LARILFSLVFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLV 97

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T+ ++ LF+VP+  L    +     L+S          P   WL+ IP  G      W 
Sbjct: 98  MTLLLILLFVVPIAVLVSSVIDNSSALMSWGSRQENLSPPTLEWLTSIPLVGEKLFNSWQ 157

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    S               ++   A+  G     + +    M+I     Y  G ++
Sbjct: 158 ALLQSGGSGLFAKVQPYFGKTATWLVAQAAHVGR----FLMHCSLMLIFSALLYYKGEAV 213

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P    L
Sbjct: 214 AKAVRHFAIRLGRERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLL 273

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G  +      I+L   G+    T L +W  +    +D  +RP L+   
Sbjct: 274 TVLMFLCCLAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSCVV-GTIDNVIRPMLIRMG 332

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             LP L    G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 333 ADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNLLSVN 387


>gi|300309868|ref|YP_003773960.1| membrane transport protein [Herbaspirillum seropedicae SmR1]
 gi|300072653|gb|ADJ62052.1| membrane transport protein [Herbaspirillum seropedicae SmR1]
          Length = 626

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 44/345 (12%), Positives = 97/345 (28%), Gaps = 13/345 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +   + L  LYF +   AP+  A I      P+     +    +    A+++ + V 
Sbjct: 16  TTLLGAAVALGMLYFGREILAPLAVAGIASLIILPLVRKLDA-LGLNRAGAAIVSVLLVG 74

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV----------PRWLSDIPGGMWASE 121
              +   + L +  +    +L             V                        E
Sbjct: 75  SCLVALAVVLAFQLVSVTSDLPQYREAIQDKVESVRAMTERPFARLEAELSAVIPQPVPE 134

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     +         + +    +     R   +          +++ L F   + 
Sbjct: 135 TTRSGKKASHAAATAPAPAAEADTRMSVRGAIKRLFALAWGPIGQAGIVLVLLVFILLEQ 194

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S+ ++L  L      +   +      + +   F    ++ +  GL++G+     GVP  
Sbjct: 195 ESLRERLIRLAGLTEMSRTMQALGDAAEGVSRFFFSQFLVNLAFGLIMGAVLAAGGVPHA 254

Query: 242 VALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V  G +  ++  +P    ++           I    + A     +      IV   + P 
Sbjct: 255 VLWGTLAGVLRFVPYLGALASGVMIAIFIAAIDPGWWLALSFLAFYGCLEVIVANFIEPR 314

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + G    L  L      +      G +GL +   L   + V  + 
Sbjct: 315 IYGHSSGLSPLAVIVSALFWGSLWGPIGLLLSTPLTLCLVVAGRH 359


>gi|218291267|ref|ZP_03495243.1| protein of unknown function UPF0118 [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238815|gb|EED06027.1| protein of unknown function UPF0118 [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 354

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 112/350 (32%), Gaps = 12/350 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +      +  ++  + L     L   F   L++LII +   P       ++    +
Sbjct: 11  MSIALTLTCIYLVGLLRSLFLDIWGVLSSLFYTFLASLIITYILQPAVDVLHRRRV-PRS 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +I    +  +  V +L L      ++ +L S +             ++         
Sbjct: 70  AAILIVYAVIAAILAVVVLNLIPVISRQIAQLSSSLPAITAELSRWIDMINS-------- 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L +     I +      + ++  P          L+       +   +F+  +D
Sbjct: 122 --RKTYLPNAVRTGIENALNQLEHRVEVAPTGLFSVVTSTLNAIFMAFVVPFLVFYMLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I + +  +    +    + + R +   +     G  +I +  GL+    Y +  +P 
Sbjct: 180 AKAIGRGMVRMAPAKYKHRVRLVLRAIDDTLGGYVRGQFLIMLAVGLLSFIGYLIIRLPY 239

Query: 241 HVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG       +IP   PI       I  L          + +       +    L P 
Sbjct: 240 ALLLGAFLGFADIIPYLGPIIGIAPAVIIALTTSGWPMLVKVVIVNIAVQQVEGNILSPQ 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++G  + L  +     L+ G    G++GL +    +A+  V+W     A 
Sbjct: 300 IMGRTLHLHPMAIVAALIVGGEAGGIVGLVLAVPALAVCKVVWMHWREAR 349


>gi|284032875|ref|YP_003382806.1| hypothetical protein Kfla_4991 [Kribbella flavida DSM 17836]
 gi|283812168|gb|ADB34007.1| protein of unknown function UPF0118 [Kribbella flavida DSM 17836]
          Length = 525

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 87/308 (28%), Gaps = 20/308 (6%)

Query: 12  MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  ++   L+      +     ++ +L I     P+   F+ +   +      +  
Sbjct: 194 FFAALGVLVAWGLWNALGQARSVLILLVVSLFIAVGLNPLVEWFMRR-GLNRGLSVGVVF 252

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++         +      ++  L+                          S    +  
Sbjct: 253 LLMILAVAGVGFAIVPVVTDQINGLIRNAPEWLDLLTK--------------SRTLNELN 298

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q ++   +                  G +  +   S   ++I   +F     S+ + 
Sbjct: 299 ERYQFIQKAQDYVQDPALAQRAFGGILGVGKVVANALFSGFTILILTLYFLASLPSVKRA 358

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGV 246
             SL           +   V   +     G  ++A+  G+V+     + G+    VAL +
Sbjct: 359 AYSLVPASRRTRVSILGDEVLGRVGGYVSGQFLVALCAGVVMFVFLQIVGLRDYAVALAI 418

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    A IP    +    +   +     ++       +G I   + +  + P ++   + 
Sbjct: 419 VVMFTAFIPMVGGLIGVVLVAAIGFTDGLWVGIACLAYGVIYQQVENYVVAPRIMRRAVD 478

Query: 307 LPFLPTFF 314
           +P   T  
Sbjct: 479 IPGAVTVI 486


>gi|257439022|ref|ZP_05614777.1| putative membrane protein [Faecalibacterium prausnitzii A2-165]
 gi|257198512|gb|EEU96796.1| putative membrane protein [Faecalibacterium prausnitzii A2-165]
          Length = 403

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 41/346 (11%), Positives = 102/346 (29%), Gaps = 13/346 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFI---------SKKEESSTFLAVIATVSVMCL 73
           ++  L G   P +   +I +   P+ +                 ++     +  +  + L
Sbjct: 41  AVSTLTGILMPFIYGSVIAYLLKPVCNWIEAFLHKLFPERMHRFANMLAVALTILFGLLL 100

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               ++ +    +  +  L           +        I       +          + 
Sbjct: 101 IYALIMMIVPQLINSVTALYFTARDNIGDFVEWISKQEFIANNKKLLDFIESSYDSLDAN 160

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  I   A+   +  + +  + +  +I   +         QQ   +  
Sbjct: 161 LDAWIKNTLLPSMQNILSGAAVGVVNVVTWIKNFVIGLIVSVYLLASRKKFGQQGKLILY 220

Query: 194 HLFPAYWKKISRI----VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    W  +         ++      G  + +   G++   A  +   PS + + VI  
Sbjct: 221 SLVKPRWADLIMEEVRYADRMFGGFINGKILDSAIIGVLCYIACLIFKFPSALLVSVIIG 280

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP   P      +  L++  N   A    L+  +   +    + P ++G    L  
Sbjct: 281 VTNVIPFFGPFIGAIPATLLILIQNPIKALWFVLFVLVLQQVDGNIIGPKILGNTTGLSS 340

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               F ++      G +G+ IG  L A+I  + K+ +       ++
Sbjct: 341 FWVLFAILLFGGLWGFVGMIIGVPLFAVIYDVIKKLVFHGLNRNDE 386


>gi|258511994|ref|YP_003185428.1| hypothetical protein Aaci_2027 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257478720|gb|ACV59039.1| protein of unknown function UPF0118 [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 354

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 113/350 (32%), Gaps = 12/350 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +      +  ++  + L     L   F   L++LII +   P       ++    +
Sbjct: 11  MSIALTLTCIYLVGLLRSLFLDIWGVLSSLFYTFLASLIITYILQPAVDVLHRRRV-PRS 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +I    +  +  V +L L      ++ +L S +             ++         
Sbjct: 70  AAILIVYAVIAAILAVVVLNLIPVISRQIAQLSSSLPAITAELSRWIDMINS-------- 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L +     I +      + ++  P          L+       +   +F+  +D
Sbjct: 122 --RKTYLPNAVRTGIENALNQLEHRVEVAPTGLFSVVTSTLNAIFMAFVVPFLVFYMLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +I + +  +    +    + + R +   +     G  +I +  GL+    Y +  +P 
Sbjct: 180 AKAIGRGMVRMAPAKYKHRVRLVLRAIDDTLGGYVRGQFLIMLAVGLLSFIGYLIIRLPY 239

Query: 241 HVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG       +IP   PI       I  L          + +       I    L P 
Sbjct: 240 ALLLGAFLGFADIIPYLGPIIGIAPAVIIALTTSGWPMLVKVVIVNIAVQQIEGNILSPQ 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++G  + L  +     L+ G    G+LGL +    +A+  V+W +   A 
Sbjct: 300 IMGRTLHLHPMAIVAALIVGGEAGGILGLILAVPALAVCKVVWTQWREAR 349


>gi|28378015|ref|NP_784907.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254556222|ref|YP_003062639.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300767941|ref|ZP_07077849.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308180196|ref|YP_003924324.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|28270849|emb|CAD63754.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|254045149|gb|ACT61942.1| transport protein [Lactobacillus plantarum JDM1]
 gi|300494482|gb|EFK29642.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|308045687|gb|ADN98230.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 397

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 104/334 (31%), Gaps = 9/334 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCLFIVPLLFL 81
           FL   F P+L +  + +   P+          K   S T    I  V +  L +   + L
Sbjct: 40  FLSVVFMPILISGFLFYMLNPLVKLLTKVHYKKFRISRTGAVAIVFVLLFGLLVWGAVSL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++ +L+  +             L +    +   ++     S          +  
Sbjct: 100 LPRLVSQVTQLIYNLPSIATEMQKAATKLINNSSVLKRIDI-----SSYTKQFNGEISKY 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             N +  +               +  I + + LF+  +D       +             
Sbjct: 155 SQNFLSSLSSSVVTVISTITSVTIMAITIPVVLFYMLKDSEKFIPAISRFLPKKQRPEVI 214

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   I S   G  I  +  G      Y L   P  + LGVI  +  +IP   P  
Sbjct: 215 GLLQKMGDTISSYISGQVIECLFVGTFTAIGYMLISQPYGLLLGVIAGLTNIIPYVGPYI 274

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             A S+ +    +      + +   I   +    + P ++G  +K+  L     L+    
Sbjct: 275 GIAPSLIVAFTKSPMQVVYVIIVVVIVQQVDGNLIYPNIIGRTLKIHPLTIIILLLAAGN 334

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             G+LG+ +     A++  +       ++   E+
Sbjct: 335 IAGILGMILAIPFYAVVRTVVIYLYNIVELRNEE 368


>gi|148558731|ref|YP_001257437.1| hypothetical protein BOV_A0400 [Brucella ovis ATCC 25840]
 gi|225628899|ref|ZP_03786933.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
 gi|148370016|gb|ABQ62888.1| putative membrane protein [Brucella ovis ATCC 25840]
 gi|225616745|gb|EEH13793.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
          Length = 372

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 21  MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 80

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 81  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 139

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 140 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 199

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 200 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 258

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 259 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 318

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 319 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 367


>gi|317503774|ref|ZP_07961786.1| membrane protein [Prevotella salivae DSM 15606]
 gi|315665071|gb|EFV04726.1| membrane protein [Prevotella salivae DSM 15606]
          Length = 368

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 112/339 (33%), Gaps = 13/339 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYY 84
           +L     P   A +I +  +PI      +          V+  + ++ +       +F  
Sbjct: 29  YLSSALLPFFIAWLIAYLLYPIVQFIEKRLHIHVRAISIVLTFLLLIGVIGGVCYLIFPP 88

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + +   L   ++    H        + I   + A++   +     +      +T +   
Sbjct: 89  MIAQFDRLQDVLMRWVHHTTHTNDITNYISEWVQANQNQIERFFKSKDFGDAIKTAMPQV 148

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                           +   ++    ++  FF   D   ++     +       +W+++ 
Sbjct: 149 FS------FVSQTASIIWSIVASAITLLYTFFILMDYEYLTANWIRIFPKKNRPFWQELM 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + V   + +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +   
Sbjct: 203 QDVKHELNNYVRGQGLVALCLGIMFCIGFTIIGFPMAIGLGILIGILDLVPYLHTFALIP 262

Query: 265 VSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   +       +          L  A+   I D  + P ++G  + L        L  
Sbjct: 263 TAFLAMLKAADTGQNFWVIFGLALLVFAVVQVITDFIVTPKVMGKAMGLNPAILLLSLSV 322

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               +G +GL +   L  LI   W+  +    + ++K +
Sbjct: 323 WGALLGFIGLIVALPLTTLIIAYWQRYVTKEDQGQDKPN 361


>gi|330972921|gb|EGH72987.1| hypothetical protein PSYAR_20762 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 354

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 140/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++      + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLTICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAIYFLLSGMIWQGVVLGLFGVLVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|313898316|ref|ZP_07831853.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312956698|gb|EFR38329.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 400

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/369 (16%), Positives = 114/369 (30%), Gaps = 26/369 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKG--------------FFAPVLSALIIGFTSWPIYSSFIS 53
            + I  ++I+  I +S+YF                    P +    I F           
Sbjct: 10  RKKIWLYVIVIAIGISIYFAFDKIDFIIRSLRRVCSLTTPFILGFAIAFLLNKPMELIEV 69

Query: 54  KKEES--------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           K             +  AV+A +  + +    L  L       +  LV       +    
Sbjct: 70  KLLGRLRMKPQHKRSIAAVLAVLLGIIIVCAFLALLLPQLFDSIFSLVKAFPGYVEDFQK 129

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                 +               +          T   T+ +  + +    FG   L+  L
Sbjct: 130 FALDFVEKYAIDTQQVTNYITDTDFFEKL----TGFVTDALPQMAKATYAFGSTLLNILL 185

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           SI+  +  L    R      +   +L       Y  ++      +  +  +G  I ++  
Sbjct: 186 SIMAGLYMLIDKERLSGYAKKINYALFPKEISEYLHRMVLASGDIFNNFIVGKAIDSLII 245

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++      +   P  + L VI  +  MIP   P       I +L   +   A    L+ 
Sbjct: 246 GILCYIGSLIFQFPYALLLSVIVGVTNMIPVFGPFIGAVPGIVILFIIHPITALYFALFV 305

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                     L P ++G  + LP +   F +  G    G++G+FIG    A+I +  KE 
Sbjct: 306 FALQQFDGNILGPLILGDKLGLPSIGILFSVCVGGGLFGIIGMFIGVPCFAVIYMAVKEF 365

Query: 346 IMAIKENKE 354
           +    + KE
Sbjct: 366 VNYRLKKKE 374


>gi|300914210|ref|ZP_07131526.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X561]
 gi|300889145|gb|EFK84291.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X561]
          Length = 358

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 122/351 (34%), Gaps = 16/351 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKG------FFAPVLSALIIGFTSWPIYSSFISKKEE 57
            M   +  + ++I+    +  +F+K         +P   + +I +   P+   F SK   
Sbjct: 17  KMQIKKTYLLFLIIGATGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPMVKFFNSK-GF 75

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S +   ++  + V    +    ++    + E   L+  +    +    +   L       
Sbjct: 76  SISLSILLVFLIVASGILFFSFYIVPLLINEFIALLQMIPFYAEEIQKLLIQLKFNYLSY 135

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              ++      +  SL       + +     I           L   + II + I  F+F
Sbjct: 136 LPPQVEKVLDKNLGSLNNAFTYHIDSAFKSVIT---------ILKDAVDIIIIPIVTFYF 186

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D     ++++ +    +   +  I + + K++         I+    +       L  
Sbjct: 187 LKDKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLSLIK 246

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           V     +GV+  I+ +IP   PI     ++ + +  ++       +   +   + +  + 
Sbjct: 247 VKYAFLIGVLAGILNIIPYVGPILSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFIT 306

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P ++   + L  +   F L+ G    G+ GL +   ++A+I  I  E  + 
Sbjct: 307 PKIMSDSVGLHPVTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIEIFIE 357


>gi|269213626|ref|ZP_06158084.1| acetyltransferase, GNAT family [Neisseria cinerea ATCC 14685]
 gi|269146150|gb|EEZ72568.1| acetyltransferase, GNAT family [Neisseria cinerea ATCC 14685]
          Length = 366

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 123/337 (36%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + +++   + L    AP   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 27  VFLTVLIWLAFALGDTLAPFAVAAVLAYVLDPLVEWLQKK-GFNRAVASMTVMVFALLLL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL +    + +   +VS++                +P        + +         
Sbjct: 86  AALLLIIVPMLVGQFNSMVSRLPQLAGFMQNTL-----LPLLKDTVGSYVEIDQASVIAW 140

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R     +    +++ + + L++F  D    S  +  L   
Sbjct: 141 LQAHTGELSNTLKAWFPVLMRQSSNIVSSIGNLMLLPLLLYYFLLDWQRWSCGISKLVPR 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 201 RFADTYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLMLVGLDSGFAIGMVAGILVFV 260

Query: 255 PGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++    +    +      ++   A+  F+    + P +VG  I L     
Sbjct: 261 PYLGAFTGLLLATVAALLQFASWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 320

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 321 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 357


>gi|294498661|ref|YP_003562361.1| putative membrane protein YueF [Bacillus megaterium QM B1551]
 gi|294348598|gb|ADE68927.1| putative membrane protein YueF [Bacillus megaterium QM B1551]
          Length = 363

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 121/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ L    F+   F P+L A  + F   PI S    K +   T   ++  V  + +  
Sbjct: 26  ISFVFLPIGVFISTLFFPILVAGFLFFLFEPIVSFLTRK-KVPKTLAILLLYVVFIGVIA 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +      ++ +L   +             LS+     W  E     L H +   +
Sbjct: 85  SIVGGVGPTLSKQLTDLAKNIPSYIVETREYINDLSNSRWFNWLVEQKYVSLDHIEESLL 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + L TN    +    S    +  +  L+++ +   LF+  +D   + +    +    
Sbjct: 145 NYASTLPTN----LTNSISSVLSVVTNITLTVVTVPFILFYMLKDSHKLRKNTLRMVPPS 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +  +     + +   G  ++ +  G+     Y + G+P  + L +I A+  +IP
Sbjct: 201 YRKETLRTMKETTNTLATYIQGQMLVCLFVGISTFIGYLIIGLPYALILALIGALTNIIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I   +    + P ++G  +    L     
Sbjct: 261 YVGPFIGVAPALIVGLLYSPTKAVLVIIVVVIVQQLDGNIISPLVIGKKLNTHPLTIIIL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+      G+LG+ +     A+   I    +  I+   + I 
Sbjct: 321 LLVAGNIAGILGMILAIPAYAVTKTIVINIVRMIQFRNKSIK 362


>gi|256833114|ref|YP_003161841.1| hypothetical protein Jden_1895 [Jonesia denitrificans DSM 20603]
 gi|256686645|gb|ACV09538.1| protein of unknown function UPF0118 [Jonesia denitrificans DSM
           20603]
          Length = 483

 Score =  133 bits (334), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 85/304 (27%), Gaps = 13/304 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
                 P+     +      +  AV + ++++      +          + EL  + V  
Sbjct: 85  FTVLLQPMDRFLHTTLRFPRSLSAVTSVLALIAALATLITVAGQQIASGITELSDRAVQG 144

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
               I   +              W   L   Q+                +   A      
Sbjct: 145 VNELISWAQRDPLNLDLSQIDAYWNDLLDAAQNQ------------SGALVSGALSVTST 192

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
                   +  I    FF  DG  I   +  L          +  R     + +      
Sbjct: 193 IGHVIAGALIAIFCTIFFLIDGRKIWTWIVGLLPRHVRERTHQAGRRGIVTLSAYVRTQI 252

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNA 278
           ++A  + + +G    L G+P  V L  +  + A IP    I       +  L+      A
Sbjct: 253 LVAFIDSIGIGVGAALIGLPLVVPLAALVFVGAFIPFVGAIITGAVAVLVALVVKGWVWA 312

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             +     +   I    L+PFL+G  + +  +     +  G    G++G      ++A+ 
Sbjct: 313 LVMLGIVLLVQQIEGNVLQPFLMGRAVAIHPVAVLLTVSAGTVLAGIVGAIFAVPIVAVA 372

Query: 339 AVIW 342
             I 
Sbjct: 373 NTII 376


>gi|296110438|ref|YP_003620819.1| transport protein [Leuconostoc kimchii IMSNU 11154]
 gi|295831969|gb|ADG39850.1| transport protein [Leuconostoc kimchii IMSNU 11154]
          Length = 388

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 94/324 (29%), Gaps = 5/324 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P                  +  + ++      +  +      ++  
Sbjct: 56  APILIAGVLYYLLSPAVKFISKYTRLPRNLSIGLILILLLAAAGGIITLVVLVLRSQVVT 115

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +                           E      +      I       T+G+  I  
Sbjct: 116 FIDNWPGYWHTSQRFINETFKSSQFAPVREFLNNTNTDINQNMIDWSRKYLTSGVAGISS 175

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           FAS    + +    +   +     +   DG   S  +            +++   + K I
Sbjct: 176 FASTLTTVGITAVATPFILY----YMLLDGHKFSGFIAEKFPPKAKHSLQELLSDISKQI 231

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLL 270
                G   +A    ++    + + G+P  + L ++     MIP    I     V    L
Sbjct: 232 AQYIRGQLGVAFAVTIMFSIGFTIIGLPYGILLALMAGFFNMIPYVGSIIAQVPVWTVAL 291

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ +
Sbjct: 292 IAGGPKLLLLAIIVLAIEQPIEGHVIAPKILGEALSIHPVTVIVVLLSSGHIFGVLGVIL 351

Query: 331 GPVLMALIAVIWKESIMAIKENKE 354
                A+  VI        + N +
Sbjct: 352 AVPTYAVAKVIVTRLFTWWRANSD 375


>gi|138896128|ref|YP_001126581.1| hypothetical protein GTNG_2491 [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250080|ref|ZP_03148774.1| protein of unknown function UPF0118 [Geobacillus sp. G11MC16]
 gi|134267641|gb|ABO67836.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210264|gb|EDY05029.1| protein of unknown function UPF0118 [Geobacillus sp. G11MC16]
          Length = 353

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 96/324 (29%), Gaps = 11/324 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P L A  I +   P+     SK         ++  +         L       
Sbjct: 38  FVTTVLTPFLLAAFITYLLHPLVEYIHSK-GVPRALAILLIYLLFFGSVGYGLYRGIPVL 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + +++EL  ++           R + D           T         +I +        
Sbjct: 97  IAQLRELDERLPSLMNTYRQWARHIHD----------ETSTWPMEVHTRIEAMFVQLEQV 146

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +      A      F+      + +   +F+  +D   + + +  +    +        +
Sbjct: 147 VARAVTMAINAVKSFIGSAAMFLLIPFIVFYMLKDIDVLKKAVWYMTPKRWRGPGIAFLK 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V + +     G   +    GL      WLAG+   + LG +  +  +IP   P+     
Sbjct: 207 DVDESLGGYIRGQLFVCAAIGLAASLGLWLAGMDYPLLLGFVIGLTNIIPYFGPLIGAIP 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L    ++     +        F+    L P +VG  + +  L   F L  G    G+
Sbjct: 267 AAILAATISLKMVIIVLALIFALQFLEGNVLSPLIVGKSVHMHPLVIMFALFAGGELAGV 326

Query: 326 LGLFIGPVLMALIAVIWKESIMAI 349
            GL +     A++ V         
Sbjct: 327 PGLILAVPTAAVLKVALVHWKEHY 350


>gi|319939615|ref|ZP_08013974.1| membrane protein [Streptococcus anginosus 1_2_62CV]
 gi|319811204|gb|EFW07510.1| membrane protein [Streptococcus anginosus 1_2_62CV]
          Length = 374

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 112/340 (32%), Gaps = 6/340 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++   +  L     P L A  + + + P+      + +    F  +I  V +  +  + +
Sbjct: 30  LLSPFVSVLNTVLIPFLIAGFLYYVTNPLVKFLEKELKIKRIFGILITLVLLFGIIALGI 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+S               LS        +      +        LS 
Sbjct: 90  IYLLPILITQLTSLISSSQNVYGELQNWINQLSQHSLFKNLN------IQSIIKQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++  L +I   I L +F  DG  +   L+         
Sbjct: 144 VDILQNILNSVTNSLGSVVSAVVNTFLILIMTPIFLVYFLIDGDKLLPMLERTVLKRDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K+   +   I     G++I A   G +    Y + G+   +   + + I  +IP   
Sbjct: 204 NITKLLTNLNATIARYISGISIDAFIIGTLAFIGYSVIGLKYALIFAIFSMIANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   +  +        ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMIITYLIADPKKMVIAVIYMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++G+ +   + +++  I K        ++     
Sbjct: 324 SSNIYGIVGMIVAIPIYSILKEIAKFLANLYDNHRAAQEQ 363


>gi|296446894|ref|ZP_06888830.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296255569|gb|EFH02660.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 386

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 110/332 (33%), Gaps = 10/332 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q       + + L+ +Y +    AP ++ L +G+   P+      +   S    ++ 
Sbjct: 18  LERQLAFWAAAIALFLLFVYTVSAVLAPFVAGLALGYLLDPVADRLQ-RAGFSRLGASLC 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + +    + F       ++ + V  +         +   +S    G +A  ++ K
Sbjct: 77  ILTVFLSIVTAVVFFAAPILTHQLSDFVVSLPGYLTTLQGLIARISREATGDFARSVYEK 136

Query: 126 HLSHPQSLKILSETFL------KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                       + ++       T       +     G   ++    ++   +  F+   
Sbjct: 137 LGLSTADAPSEVQKYVNDITAEATRMAAAFVKSLVSGGAALVNMAALVVITPVVAFYILL 196

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D  ++   LD L         + I+R + + +     G  ++ +  GL       L GV 
Sbjct: 197 DWDNMVATLDQLVPPRHREDIRFIARGIDRALAGFVRGQALVCLFLGLWYSIGLSLLGVN 256

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC---LFLWGAIELFIVDKTL 296
               +GV   I++ +P    I+   +SI +       + +            LF+    L
Sbjct: 257 FGFLIGVSAGILSFVPYVGSITAFVLSIVVATVQGWPDWSLPAEAVALVCAGLFLDGNVL 316

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            P LVGG I +  +   F L+      G  G+
Sbjct: 317 SPRLVGGSIGVHPVWLMFALLAAGSLFGFTGM 348


>gi|312962336|ref|ZP_07776827.1| hypothetical protein PFWH6_4255 [Pseudomonas fluorescens WH6]
 gi|311283263|gb|EFQ61853.1| hypothetical protein PFWH6_4255 [Pseudomonas fluorescens WH6]
          Length = 357

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 121/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +    + ++ V ++ L     P L AL++ +   P+      K   S T   V
Sbjct: 1   MADTRRWVWLGGIVLLCVFVFLLHSILTPFLVALLLAYLFDPVVDRLE-KAGLSRTLGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   +    +L L      ++  L                  +    G+       
Sbjct: 60  AVFALFTLIITALVLVLVPMLAKQLFRLYELAPQMLDWLQHTAMPWAQAKLGLSDGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I       T+ +  I   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 ----DKVKAAISEHMGQTTDIVGVILSQATASSLALIGWLTNLVLIPVVAFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++ SL           ++    +V+ +   G  ++ +  G++  +     G+   + +
Sbjct: 176 MAKIRSLLPRDREERIVSLAGECHEVLGAFVRGQLLVMLALGIIYAAGLMAIGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G+I  + A++P    +     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GLIAGLAAIVPYMGFVIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K++ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSD 347


>gi|254465372|ref|ZP_05078783.1| membrane protein [Rhodobacterales bacterium Y4I]
 gi|206686280|gb|EDZ46762.1| membrane protein [Rhodobacterales bacterium Y4I]
          Length = 357

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 112/342 (32%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +      V ++ L     P +    I +   PI     +    S        TV  + +F
Sbjct: 14  VAALAFAVVMWSLGHVLLPFILGAAIAYMIDPIADRLEAW-GMSRAGATATITVGTLVVF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ LL +    + +M +L + +                                      
Sbjct: 73  VLLLLVVVPTLIYQMIDLANVLPKLIGDARNFVNE----------RFPAVFEQDSRIHQA 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I +      +    + +  +   +  L+  + ++ + +   +   D   +  ++D L   
Sbjct: 123 ITALAETLQSRAVQVLQSVAGSAVSLLNVVVLLVIVPVVAVYMLLDWDRMIARIDELLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  +   + S   GM  + +  G     A  L G+   +A+G I  ++  I
Sbjct: 183 DHQPVIRRLAGDIDAALASFIRGMGTVCLILGTYYAVALMLVGLNFGLAVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+  +   + L   +   +    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWVSIGLVALIFVVGQVVEGNFLTPKLVGDSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + VI +       +++
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVIARFVTEQYLDSR 344


>gi|167464196|ref|ZP_02329285.1| hypothetical protein Plarl_16844 [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381973|ref|ZP_08055921.1| hypothetical protein PL1_1482 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154037|gb|EFX46367.1| hypothetical protein PL1_1482 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 369

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 110/327 (33%), Gaps = 9/327 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+    +        P + A    +   P+ +    K   + T   ++  + +  L +
Sbjct: 30  VSFLFNPLIKMFNILVVPFIIAGFFYYLLRPLVNYLTKK-HVNRTASILLIYLILAILTV 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  +  +     +M+  V  V    +      R L         ++         +S   
Sbjct: 89  LFSMVGWPTLRTQMEHFVHSVPQMVEAFKEQIRQLQQNRVFSMFAQ--------NESDIS 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +     GI     + +    +  ++ + +  + I L++  ++   I   + +     
Sbjct: 141 TKMSDYLDKGITAASNYVTGLVSVVTNFVMIVATVPIILYYMLKESDHIPDSILAAIPQK 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    ++    +   +    +G  II    G++L   + L G+P  + L V++ ++ +IP
Sbjct: 201 YRRDGEQTLEEIDSALSGFIVGRVIITGLLGVMLYIGFLLIGLPYSLLLTVVSTVLNLIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               I      + +    +   A    +   I   I    L P + G  + +  L T   
Sbjct: 261 YIGSILGAIPVLIVAFIHSPSMALWSMIVVIIAQQIESNLLSPHIYGKRLDIHPLTTIVL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+      G+LG+ +      +  +I 
Sbjct: 321 LLVAGDIGGILGVILAIPGYMVAKIII 347


>gi|319651659|ref|ZP_08005786.1| hypothetical protein HMPREF1013_02398 [Bacillus sp. 2_A_57_CT2]
 gi|317396726|gb|EFV77437.1| hypothetical protein HMPREF1013_02398 [Bacillus sp. 2_A_57_CT2]
          Length = 362

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 101/333 (30%), Gaps = 11/333 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L  L   F P +    I +   PI                 I          + L    
Sbjct: 34  VLEILFAVFIPFVIGAFITYLLHPIVEKLHE-TGLHRGLAVFIIYFLFFGGISLALYKGI 92

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++++L                            +  T         +I       
Sbjct: 93  PAFIHQLRDLAENAPQFANQYRGWIN----------LIQSKTSTWPDGLQTRIDDFIVAV 142

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              ++ +      F +  L+Y + I  +    F+  +D   + +    L    +      
Sbjct: 143 EKRLNNLLSKVITFFLNVLNYAVIIAVIPFISFYLLKDFSIMKKAAWYLTPRKWRKEGVL 202

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V K + S   G  ++    G +    +W+  +   + LG I  +  +IP   PI  
Sbjct: 203 FLRDVDKSLGSYIRGQLLVCAAIGAISSLLFWIFDMRYPLLLGTIIGVTNVIPYFGPIIG 262

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    ++           +  F+    L P +VG  + +  L     L+ G   
Sbjct: 263 AVPAVIIASALSVKMIVITIGIIIVLQFLEGNILSPLIVGKSLHMHPLLIMLALLAGGEA 322

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G+LGL I   ++A+I V    +     +NK+ 
Sbjct: 323 AGILGLIIAVPILAVIKVSIIHAKKHFSKNKQP 355


>gi|329115640|ref|ZP_08244362.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
 gi|326695068|gb|EGE46787.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
          Length = 374

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 98/349 (28%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + +       +I + ++ +      V ++++       +    +        +    
Sbjct: 30  SISRILRMTFSGAVIALVVWLMGDVLMVVFASVLCAVVLHGLSKILVRHLRLPYGWALSA 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++   +  +       + E   L   +           +        +        
Sbjct: 90  VICGLIGSAVFLVWNSGPAMISEALRLQDALRQQETALRSTLQSTPTGQMILNYLP---- 145

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S         +T    +    I    +           +++ ++IA  +F       +
Sbjct: 146 -ASLGGHQAGGGDTSSLASLGSRIAGSMTGILGSAFGAIGTLLVVLIAGLYFAMSPAVYA 204

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L         + +     + + +   G ++  +  G + G   W  GVP  +ALG
Sbjct: 205 NGFLRLVPVSKRPKVRDLLLRAGQTLWAWVAGQSLDMLVVGTLSGLGLWFIGVPLALALG 264

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +   IP    I     ++ L +         + +  ++  F+    L P +    +
Sbjct: 265 VLAGLCNFIPYIGAIMGAVPALLLALSLGTRETIMVAVLYSVIQFLEGNVLAPVIQRHAV 324

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++P   T          +G  GL     L A++          + E  +
Sbjct: 325 QMPPALTVLSQTLFGAILGFPGLIFASPLTAVLMATLDGLTPKLDEKDQ 373


>gi|315221946|ref|ZP_07863857.1| conserved hypothetical protein [Streptococcus anginosus F0211]
 gi|315188912|gb|EFU22616.1| conserved hypothetical protein [Streptococcus anginosus F0211]
          Length = 374

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 112/340 (32%), Gaps = 6/340 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L A  + + + P+      + +    F  +I  V +  +  + +
Sbjct: 30  LISPFVSVLNTVLIPFLIAGFLYYVTNPLVKFLEKELKIKRIFGILITLVLLFGIIALGI 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+S               LS        +      +        LS 
Sbjct: 90  IYLLPILITQLTSLISSSQNVYGELQNWINQLSQHSLFKNLN------IQSIIKQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++  L +I   I L +F  DG  +   L+         
Sbjct: 144 VDILQNILNSVTNSLGSVVSAVVNTFLILIMTPIFLVYFLIDGDKLLPMLERTVLKRDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K+   +   I     G++I A   G +    Y + G+   +   + + I  +IP   
Sbjct: 204 NITKLLTNLNATIARYISGISIDAFIIGTLAFIGYSVIGLKYALIFAIFSMIANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   +  +        ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMIITYLIADPKKMVIAVIYMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++G+ +   + +++  I K        ++     
Sbjct: 324 SSNIYGIVGMIVAIPIYSILKEIAKFLANLYDNHRAAQEQ 363


>gi|254830431|ref|ZP_05235086.1| hypothetical protein Lmon1_03682 [Listeria monocytogenes 10403S]
          Length = 390

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 53/364 (14%), Positives = 126/364 (34%), Gaps = 19/364 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLLILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +    ++S          T +  + I  I         + L    + 
Sbjct: 128 DEFSRSSLFDQLKDKLNTNMSDIMKTLSTKGTSVINSSISSIGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +L   Y + G+P  + L +I A  +++P   P      +I + I  + +    L +   +
Sbjct: 244 LLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCV 303

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +  K + P ++G  +K+  +   F ++      G+LG+       A++ VI     +
Sbjct: 304 VQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFI 363

Query: 348 AIKE 351
             K 
Sbjct: 364 WFKR 367


>gi|86146847|ref|ZP_01065166.1| permease PerM [Vibrio sp. MED222]
 gi|218710275|ref|YP_002417896.1| putative permease perM [Vibrio splendidus LGP32]
 gi|85835299|gb|EAQ53438.1| permease PerM [Vibrio sp. MED222]
 gi|218323294|emb|CAV19471.1| putative permease perM [Vibrio splendidus LGP32]
          Length = 358

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 112/356 (31%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQ-RLGVPRTP 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    + ++ L  L      ++  L++ +             + +    +   +
Sbjct: 69  SVMLVILMFFSVMLLALFGLVPTIWEQVGNLINDIPSMYGGLQKFIATIPERYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESIVSNAKNKALGFGESVVKGSLASLVSLAT--------LAVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMISMASGVLP-KNRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V      +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 ALLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +W        ++  +
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPE 355


>gi|120555336|ref|YP_959687.1| hypothetical protein Maqu_2425 [Marinobacter aquaeolei VT8]
 gi|120325185|gb|ABM19500.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 363

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 78/345 (22%), Positives = 142/345 (41%), Gaps = 5/345 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                  M++ + L  +  +K FF P+  A+ I     P+    + +  +  T  A+I  
Sbjct: 6   ETRTFLAMLLGVSLAFILLMKPFFGPIFWAVAIALIFHPVQQLLVRRLGDRPTLNALITL 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              M + ++P+L L    + E   +  K+       I    ++  +     A + +    
Sbjct: 66  FVCMVIVVIPVLVLGAALIAEGMGIYQKIQAGE---IRPGEYIDQVNQSFPAIQAFLAQF 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +            G  F+ + A   G     + L +  M+   FF  RDG  + + 
Sbjct: 123 DINFADLRDRAVNAFLGGSQFLAKQALGIGQNTFQFFLGLALMVYLAFFLIRDGQKLIEL 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L     + +     +V R+T  G  +IAI +G + G  +W+ G+   +  GV+
Sbjct: 183 MIRALP-LGDERERLLFAKFAEVTRATVKGNLLIAIIQGALGGMIFWILGITGALLWGVV 241

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            AI++++P  GA I +   +IYL   G+I  A  L  +G + + + D  LRP LVG   K
Sbjct: 242 MAIVSLLPAVGAAIVWVPAAIYLAAVGDIVPAIILTAYGVVVIGLADNLLRPVLVGRDTK 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +P        +GG+   G+ G  +GP++ AL    W   I    +
Sbjct: 302 MPDYLVLLSTLGGIVMFGINGFVMGPLVAALFMAFWGIFIREFGQ 346


>gi|297539825|ref|YP_003675594.1| hypothetical protein M301_2662 [Methylotenera sp. 301]
 gi|297259172|gb|ADI31017.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 354

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 166/349 (47%), Gaps = 4/349 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T ++ + +    +  +I ++   +  F AP+  A ++ + SWP+            T  
Sbjct: 5   KTKISRRIVPWLALGGLIALASMVVAPFLAPIAWAGVLAYASWPVAERIRRWCNNKDTLA 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +AT  +     +PL++L +   LE+  L   +     +  PVP  L  +P        
Sbjct: 65  AFLATALLALTLFLPLIWLVWLAQLELGHLFPALQAFLANPPPVPETLRSLPWLGEWLMQ 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              H +   +   L            +   A   G         +IF+++ LFFF+RDG 
Sbjct: 125 QQAHFTANPNGASLVFKNWLAAHTADLSMLAGGLGKS----LAKMIFVVVILFFFFRDGT 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I ++L  + E    A+            R+   G+ + A+ +G+V G  YW+AG+ S V
Sbjct: 181 RIVRELRHVLERFIGAHVHDYLHAAGTTTRAVVYGILLTALVQGVVAGLGYWVAGLSSPV 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             GV+T I+A+IP G P+++ A  + LL++G    A  +++WGA  +  +D  LRP  + 
Sbjct: 241 MFGVLTMILALIPFGTPLAWGAAGLLLLLQGETGAAIGVWIWGAAIVSQLDNVLRPLFIS 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               +PFL   FG++GG+   GL+GLFIGP++++++  +W+E    + E
Sbjct: 301 SISPIPFLLVLFGVLGGLLAFGLVGLFIGPIVLSVVWAVWREWTAHLDE 349


>gi|71903383|ref|YP_280186.1| hypothetical protein M28_Spy0718 [Streptococcus pyogenes MGAS6180]
 gi|71802478|gb|AAX71831.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS6180]
          Length = 393

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +    F    + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|125975677|ref|YP_001039587.1| hypothetical protein Cthe_3199 [Clostridium thermocellum ATCC
           27405]
 gi|281416685|ref|ZP_06247705.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
 gi|125715902|gb|ABN54394.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
 gi|281408087|gb|EFB38345.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
          Length = 349

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 110/319 (34%), Gaps = 5/319 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              PVL   +I +   PI     SK   S T   ++  +    L    ++F+    +   
Sbjct: 34  IIFPVLLGAVIAYILRPIVLKLESK-NISRTKSIIMIYLVFGILLTTAVIFIAPIFVDNT 92

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +E ++ V             +  +      S      + +  +  +     +  + +   
Sbjct: 93  REFINTVPEITTEYGEKFNKILKMIDTSGWSAEVKNAIYNEINNGVNIAENMLMDALRKT 152

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +  +      +  L +I       +  +D     +   SL    +        R + +
Sbjct: 153 LVWLFKSLTGISNIILGMIIAY----YIMKDAEFFKKGALSLVPRRWRNEIIGTCREINE 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           ++     G  + A+  G++   A  + GV     LG I  I  +IP   P      S+ +
Sbjct: 209 ILSCFIQGQLLTALIIGIMETVALAIIGVKYSPILGFIGGISNIIPYFGPFIGAIPSVAV 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +   A    +   +   I +  + P ++ G + L  + T   ++ G    G++G+ 
Sbjct: 269 ALIDSPVKAFWTVVAFLVVQQIDNAFISPKIIEGRLGLHPITTILAVLAGGEFFGIIGML 328

Query: 330 IGPVLMALIAVIWKESIMA 348
           +   + A++ VI K  I A
Sbjct: 329 VAVPVTAVLKVILKRLIEA 347


>gi|163857030|ref|YP_001631328.1| hypothetical protein Bpet2718 [Bordetella petrii DSM 12804]
 gi|163260758|emb|CAP43060.1| putative membrane protein [Bordetella petrii]
          Length = 360

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 3/340 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
            +   + L  F+  V    I+     P++    +K  +     A+   + V+ L IVP+ 
Sbjct: 19  TIAFGWVLWPFYGAVFWGAILAIIFAPVHRRIAAKLVKRRNLAALCTLLLVLLLVIVPVT 78

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    + E   L  +V   N +     + + D         L T+      +      T
Sbjct: 79  LITGSLVQEGANLYQRVKSGNLNFGVYFQQVLDALPAS-LHSLLTRFGMADITSLQDKLT 137

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                G  ++   A   G     + +S   M+  LFF  RDG  +S +L +    L  + 
Sbjct: 138 AGAMRGSQYLATQAFNIGQDTFQFLISFGIMLYLLFFLLRDGSLLSARLRAAIP-LSDSR 196

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              + R    VIR+T  G   +A  +G + G  +++ G+   V  GV+ A ++++P    
Sbjct: 197 KIHLLRKFTTVIRATVKGNIAVAAAQGALGGVIFYVLGIQGPVLWGVVMAFLSLLPAIGA 256

Query: 260 -ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +  V++Y L+ G  +    L L+G + + +VD  LRP LVG   KLP        +G
Sbjct: 257 GLIWVPVAVYFLVTGATWQGVALILYGVLVIGMVDNVLRPLLVGKDTKLPDYVVLISTLG 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G+   GL G  IGP++ AL    W        E   +  +
Sbjct: 317 GMALFGLNGFVIGPLIAALFITCWDLFTSDFVEPAARDDT 356


>gi|167624250|ref|YP_001674544.1| hypothetical protein Shal_2326 [Shewanella halifaxensis HAW-EB4]
 gi|167354272|gb|ABZ76885.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 373

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/359 (15%), Positives = 121/359 (33%), Gaps = 11/359 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +   +I+    +++YF  G  AP+L AL++ F      +   ++   +   
Sbjct: 10  KERFSDPQAVTLVLILLGFALAIYFAGGLLAPLLIALVLAFLLEWPVAQM-ARIGINRPT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + L ++    L      +   L+  +      G+   +   +         
Sbjct: 69  AASLVLVLFIGLMLLISFGLVPSLWRQGVSLMGDLPSMIDKGLNTAQLYINQYPQFVNPS 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     ++    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QL-------DTMVAELKKMLDTQHLLDIGKQILGYSASLLVLMVYAILIPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +              +K+   + + I +   G  I  +  G+V    + +  +   
Sbjct: 182 DELIKGSKRFFPT-NRDLARKVWSEMHQQIFNYIRGKVIEIVIIGVVSYIFFAVMDLRYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L +   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPIALVAFVQWGISPEFGYLIVGYGIIQALDGNVLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    + L  +     ++      G+ G+F    L +L+  +     +   +  ++  S
Sbjct: 301 LFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVINAWPVPNAQGLQQQDS 359


>gi|297202022|ref|ZP_06919419.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197714344|gb|EDY58378.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 367

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 110/343 (32%), Gaps = 17/343 (4%)

Query: 21  LVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            VSL+ L        P++  L++   +WP     + +        A   TV  + +    
Sbjct: 28  AVSLWVLGRMWSVVWPLVIGLLLTTLTWPPTRFLLRR-GWKPALAASTVTVLFLLVAAGV 86

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  +      +  +L   VV   Q                WA+                +
Sbjct: 87  VALIAVPVASQSGDLTDGVVDGVQKVRE------------WAAGPPLNIGDAQIDKAFDT 134

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                 +G+  +           ++  ++ +  +  +FFF +DG      L         
Sbjct: 135 AVSRAQDGLGSMVGAVVTGVSTVVNGLVTAVLALFLMFFFLKDGPRFLPWLARQLPGRLS 194

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                ++      + S       + + + +++G   W+ GVP  + L V+T + A +P  
Sbjct: 195 TDVPTVAARGWDTLGSFVRSQAAVGLIDAVLIGLGLWILGVPLVLPLAVLTFVSAFVPIL 254

Query: 258 APIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                     +  L+   + +A  +     +   +     +P +    + L        +
Sbjct: 255 GAFFAGFVAVLIALVSNGLMDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHAAVILLAV 314

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G    G++G  +     ALIAVIW      ++E  +   ++
Sbjct: 315 TLGGSLAGIVGSLLAVPAAALIAVIWNYVREQLQEPSQDPGTD 357


>gi|213965467|ref|ZP_03393662.1| putative membrane protein [Corynebacterium amycolatum SK46]
 gi|213951851|gb|EEB63238.1| putative membrane protein [Corynebacterium amycolatum SK46]
          Length = 516

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 91/304 (29%), Gaps = 14/304 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++  + L  +     P+L ALI+     P     +  +       A+   +
Sbjct: 89  RFLITAAALYVSAMILGKIWAGVLPILLALIVSTVLAPPAVFLMKHRW-PRALAALTVIL 147

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    + FL      +  EL  +     Q    + +                    
Sbjct: 148 GAVAVLGGVVAFLAPTVQSQFPELRRQFTDGIQEVQNIIQ------------APPFNVKD 195

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   +         I     +   +     ++++ M++  FFF +DG      L
Sbjct: 196 EQILDALDQGSQWLQERSGDIANTVFQGISVVSSVAVTLMAMLVLTFFFIKDGQDFLPWL 255

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L       +  ++       +        I+++ + + +G+   +  VP  + L V+T
Sbjct: 256 RRLTGRRLGWHLTEVLTRSWNTLSGYIRTQAIVSLIDAVFIGAGLAILNVPLAMVLAVVT 315

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP     +      +  L+   +  A  + L       I    L P L    + L
Sbjct: 316 FFAGFIPIVGAFTAGFIAVVVALVANGLTTAIFVLLIIIAVQQIEGNILSPILQSKAMDL 375

Query: 308 PFLP 311
               
Sbjct: 376 HAAI 379


>gi|94266678|ref|ZP_01290353.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93452666|gb|EAT03223.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
          Length = 362

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 110/358 (30%), Gaps = 12/358 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +PQ ++  +++    + L F     AP+L+A+II +      +    +        
Sbjct: 11  RYFSDPQAVILTLLLLTGALVLVFFGRMLAPLLTAIIIAYLLEGPIAWMEERLGVRRLVG 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                     L +V  L +F     ++ +L+ ++      G  V   L +    +   ++
Sbjct: 71  VSCVLALFFLLVLVSALTVFPVLWTQLADLLKEIPHYLARGQQVLLNLPERYPVITEEQV 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +                    +   +    +  +   + ++ +   +FF  +D  
Sbjct: 131 RELVGTIRNQ---------VGALGQHVLAISLASVVNIITLLVYLVLVPFLVFFLLKDKD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +            + + R +   + +   G     +  G +   ++ +  V   V
Sbjct: 182 LIMNWISLRLPRE-RGAAQDLWRDLDAQMGNYVRGKFWEILIVGGITFISFTILRVDYAV 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L  +T +  ++P    +  T   + +     G       L +   I   +    L P L
Sbjct: 241 LLATLTGLSVLVPYVGAVVVTIPVLLVGYFQWGVGSELAWLLIAYGIIQTLDGNVLNPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               + L  +     ++      G  G+F    L  L+  +           +E+  +
Sbjct: 301 FAKAVNLHPVAIIGAILIFGGLWGFWGIFFAIPLATLVNALIITWPRNPDPEEEEAQA 358


>gi|55821153|ref|YP_139595.1| hypothetical protein stu1142 [Streptococcus thermophilus LMG 18311]
 gi|55737138|gb|AAV60780.1| predicted membrane protein of the putative permease (PerM) family
           [Streptococcus thermophilus LMG 18311]
          Length = 392

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 121/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILV--------------SLYFLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++ ++I+ +I +               + FL     P++ ++++ +   P+   
Sbjct: 18  ILNNQAVVSFLILLLIGLTVLIFTKISPIFSPVIQFLTIVMLPLVISMLLYYLIKPLV-L 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + +   + T   ++    +  L +  +         ++  L+                 
Sbjct: 77  LVERTGLNRTMSILVIYAILALLLVWGISTAIPNLQDQILILLRNAPSYISRANSETERW 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +P            LS   +  I       T+ + +I  FAS    + +   L+   +
Sbjct: 137 LKLPILSNFHGDLEAMLSDFSARMINYAENFSTSALSWIGTFASTVARVTVAIILTPFIL 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +  RD   +     S     F     ++   +   +     G   +AI   ++  
Sbjct: 197 F----YLLRDSQKLKHSFVSALPTRFRETTVRMLSDINNQLEGYVRGQVTVAIVIAIMFC 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+   +  G++   + MIP           + + +         + +   IE  
Sbjct: 253 IMFKIVGLRYGMTFGILAGFLNMIPYLGSFIAMVPVVIMGLVQGPTMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + VI K+     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVIVKDIFDWYR 372


>gi|15675014|ref|NP_269188.1| hypothetical protein SPy_1011 [Streptococcus pyogenes M1 GAS]
 gi|21910186|ref|NP_664454.1| hypothetical protein SpyM3_0650 [Streptococcus pyogenes MGAS315]
 gi|28896114|ref|NP_802464.1| hypothetical protein SPs1202 [Streptococcus pyogenes SSI-1]
 gi|71910551|ref|YP_282101.1| hypothetical protein M5005_Spy_0738 [Streptococcus pyogenes
           MGAS5005]
 gi|94988484|ref|YP_596585.1| hypothetical protein MGAS9429_Spy0853 [Streptococcus pyogenes
           MGAS9429]
 gi|94990364|ref|YP_598464.1| hypothetical protein MGAS10270_Spy0855 [Streptococcus pyogenes
           MGAS10270]
 gi|94992310|ref|YP_600409.1| hypothetical protein MGAS2096_Spy0813 [Streptococcus pyogenes
           MGAS2096]
 gi|139473855|ref|YP_001128571.1| hypothetical protein SpyM51019 [Streptococcus pyogenes str.
           Manfredo]
 gi|13622163|gb|AAK33909.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
 gi|21904379|gb|AAM79257.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|28811364|dbj|BAC64297.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71853333|gb|AAZ51356.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS5005]
 gi|94541992|gb|ABF32041.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS9429]
 gi|94543872|gb|ABF33920.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10270]
 gi|94545818|gb|ABF35865.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS2096]
 gi|134272102|emb|CAM30346.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
          Length = 393

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +    F    + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|222153253|ref|YP_002562430.1| membrane protein [Streptococcus uberis 0140J]
 gi|222114066|emb|CAR42470.1| putative membrane protein [Streptococcus uberis 0140J]
          Length = 393

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      FL     P++ + I+ + + P+      K   + +   VI    ++C+ I
Sbjct: 43  ISFLFSAVGSFLTILMLPLVISTILYYLTKPLVDFIE-KLGPNRSVSIVIVFGLIICVLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L      +    +S +    +        L +    +         L++     +
Sbjct: 102 WAFSGLIPMISDQTTTFISDLPKYVETMDKEATKLLENKWLVNYKAELQDMLTNISQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N I++   FAS    I +            LF+F RD   +   L ++    
Sbjct: 162 DYAESFSKNAINWAGNFASAIARITVSII----ISPFILFYFLRDSSMMKDGLVNVLPTK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + + +     G   +AI  G + G  + + G+   +   +    + M+P
Sbjct: 218 VRIPISRVLGDINQQLSGYVQGQVTVAIIVGFMFGIMFSIVGLKYSITFSIAAGFLNMVP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPIMLIKVLIIFTIEQTIEGRFVTPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+F+     A + VI KE     K
Sbjct: 338 LLTAGAMFGVWGVFLVIPFYASVKVIVKELFEWYK 372


>gi|257873728|ref|ZP_05653381.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257807892|gb|EEV36714.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 399

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 106/337 (31%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     +K +   +       + ++ L +
Sbjct: 35  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLETK-KIPRSASIAGIYLLILLLIV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L+     +  +L++ +               +           T  L +  S  +
Sbjct: 94  FAGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIM 153

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G   +    S    +F+      I       F  R+       + SL    
Sbjct: 154 SFIGDYWQTGAAGLSSLFSTISTLFIALFTGPIIAF----FLLRNPNKFYFSVLSLVPPR 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 210 FRKDFNEIVKISDLQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 269

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       +++  + +        +       +    + P ++G  +K+  +     
Sbjct: 270 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVVPRVMGDRLKIHPITILVV 329

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ V+        K+ 
Sbjct: 330 LLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQR 366


>gi|227505861|ref|ZP_03935910.1| integral membrane protein [Corynebacterium striatum ATCC 6940]
 gi|227197559|gb|EEI77607.1| integral membrane protein [Corynebacterium striatum ATCC 6940]
          Length = 430

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 110/334 (32%), Gaps = 14/334 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+    + +    L F+     PV+ A+++    +P+ +   +  +      ++   +  
Sbjct: 68  IIVVAGVGLAGYLLKFIWVGLLPVILAILVCTVLFPVTNWLRAH-KFPRALASITTLLGF 126

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +       +      +   LVS+        + +            A +L  +  +  
Sbjct: 127 LAIIGGVFAAMAPVVSSQGASLVSQAEGGLNKLVDM------------AKDLPFEIDAAK 174

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               +             I         +     ++++ M+   FF  +DG      L +
Sbjct: 175 VQEVLDDAIAFIKGQASQIATGVISGVSMASSIVMALVIMLFVAFFILKDGDKFLPWLRT 234

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +    +  ++   V   +         +A  + +++G   W   VP  + +GV+T  
Sbjct: 235 YTGYSAGWHATELLTRVWNTLSGFIQAQAAVAAVDAILIGLGLWALQVPLALVIGVVTFF 294

Query: 251 MAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + IP    ++      I  L+   +  A        I   +    L+P L    + L  
Sbjct: 295 ASFIPVIGAVTAGALAVIIALVSDGLTKALLALALIIIVQQVEGNVLQPMLQSKAMGLHA 354

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                 +  G    G++G F+   + A IAV+++
Sbjct: 355 AMVLLSVTVGSALAGIIGAFLAVPVAATIAVVFR 388


>gi|168184524|ref|ZP_02619188.1| putative membrane protein [Clostridium botulinum Bf]
 gi|237795256|ref|YP_002862808.1| hypothetical protein CLJ_B2025 [Clostridium botulinum Ba4 str. 657]
 gi|182672351|gb|EDT84312.1| putative membrane protein [Clostridium botulinum Bf]
 gi|229261807|gb|ACQ52840.1| putative membrane protein [Clostridium botulinum Ba4 str. 657]
          Length = 364

 Score =  132 bits (333), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 110/328 (33%), Gaps = 1/328 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I   +        P + A  I +   P+   F +K +    F  +I  + V+ L I+ + 
Sbjct: 32  IYSFIKSFLSILVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFIN 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  + +L           I                    +  ++  +L     +
Sbjct: 92  TFVPKIIKNIGDLFVHSPDYINQTIQWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI-S 150

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    ++       +F    + +   +I  I  L        ++ + + +L      + 
Sbjct: 151 NLTNTFLNTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALFGEKNYSK 210

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                + V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P
Sbjct: 211 ILSFFKEVDIVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGP 270

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +  + +  N   A  + ++  I        L P ++G  + L  +   F +  G
Sbjct: 271 FIGMIPAFIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIG 330

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIM 347
             T G++G+F+   + A+I +   + I 
Sbjct: 331 GGTFGVMGMFLSVPIAAIIKIYLDKYIE 358


>gi|227504066|ref|ZP_03934115.1| membrane protein [Corynebacterium striatum ATCC 6940]
 gi|227199332|gb|EEI79380.1| membrane protein [Corynebacterium striatum ATCC 6940]
          Length = 499

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 94/304 (30%), Gaps = 14/304 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+      +    S+  AV+  +          LF+    + + + L  +     Q 
Sbjct: 93  VLAPVAGWL-RRHHVPSSLAAVLTILVSFSGLGALFLFIAPNFVRQSQTLYLQTANGIQA 151

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                         +W  +             I             I             
Sbjct: 152 LR------------LWVQQPPLNLNEDEIGTYIDEIALWAQKQAGSIAGSVFNGIGQATS 199

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             ++++ +++  FFF +DG      L          +  ++       +        +++
Sbjct: 200 MIVTLMVVLVLTFFFLKDGHHFLPWLREATGRRTGWHLTELLTRGWNTLGGFVRAQALVS 259

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCL 281
           + + + +G    + GVP  + L +IT I   IP    I   A+S+   L+   +  A  +
Sbjct: 260 LVDAVFIGIGLAIIGVPLALTLAIITFIAGFIPFVGAIVAGALSVTIALVSLGVTKALLV 319

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L   +   +    L P+L    + L  +     +  G     L+G F+     A+ AV 
Sbjct: 320 LLLVLVVQQLEGNVLSPWLQSKAMNLHPVVVLTSVTVGSALFNLVGAFLAVPAAAMFAVA 379

Query: 342 WKES 345
           ++  
Sbjct: 380 YRYF 383


>gi|85711221|ref|ZP_01042281.1| Predicted permease PerM family protein [Idiomarina baltica OS145]
 gi|85695134|gb|EAQ33072.1| Predicted permease PerM family protein [Idiomarina baltica OS145]
          Length = 348

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 5/339 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              M++ + +     LK F+A +  A  +    +P+           S   A++  +   
Sbjct: 10  FLLMLLAVSIAFALILKPFWASIFWACAVAVIFYPLQIRLKRMLGRRSNRAALLTLLIAT 69

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + ++P+L + Y  + E  +L  K+   +     +   +     G+         L    
Sbjct: 70  VIVVIPVLLVAYSFIQEGVQLYQKLSSGDVSIAQIVDKIEK---GLPFLPDLLARLGIDI 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  +    +   F  + A   G     + +++  M+   FF  RDG  + + +   
Sbjct: 127 ESLPERISQWAMSASQFFAQEALVVGQNTFGFVMNLGLMLYLTFFLLRDGNKLIRLMVRA 186

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L      ++ +   +V R+T  G  ++A+ +G + G  + L G+P+ V  GV+ A +
Sbjct: 187 LP-LGDEREHQLFKKFAEVTRATVKGNIVVAMVQGALGGVIFALLGIPAPVLWGVVMAFL 245

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++IP     I +  VS+YLL  G  F    L L+G I + + D  LRP LVG   KLP  
Sbjct: 246 SLIPAVGAGIVWLPVSVYLLATGATFEGIVLVLYGLIIIGLADNALRPLLVGRDTKLPDY 305

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              F  +GG+   G+ G  IGP++ AL    W       
Sbjct: 306 VVLFSTLGGLSLFGITGFVIGPLIAALFLAFWDMFTHEF 344


>gi|119025423|ref|YP_909268.1| hypothetical protein BAD_0405 [Bifidobacterium adolescentis ATCC
           15703]
 gi|118765007|dbj|BAF39186.1| hypothetical integral membrane protein [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 507

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/348 (11%), Positives = 106/348 (30%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  ++L   +     ++     V+ +L +     P+    +       +F ++
Sbjct: 49  RALLYIAIAIVLLSFCWRSWGKIEYLIIDVVISLFLALAVEPVVIPLVKH-GWKRSFASI 107

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A + +  L  V         + ++  L + +    Q                  ++   
Sbjct: 108 FALLMLGVLLCVMFGLFGNLFVQQVIALCNGLPALYQQICDF------------VAQYTD 155

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    SL       ++T+ +      A      F  + L+++ +I+  F+    G  +
Sbjct: 156 FKLPEINSLGGEILKNIQTSWVTDFAGTAISTVSGFFSFLLNLMTVIMTTFYISAAGPKL 215

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S      I+A+              VP  + L
Sbjct: 216 RRAACQWMAPSAQRRFLFVWTVSQTQISSFLFSRAILAVLNAFFTSICLMALHVPYWMPL 275

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++      ++ A  +  +  +   I +      +  
Sbjct: 276 ALFCGVVSQFIPMLGTYIGGALPVLFAWGSCGLWQAIAVVAFICVYQQIENLIFASKISR 335

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G +G F+   ++A I  I +       
Sbjct: 336 RTMDVNDAVAFLAVLAFGSLFGAIGAFLALPIVASIQTIARTYTKRYD 383


>gi|322386253|ref|ZP_08059885.1| permease [Streptococcus cristatus ATCC 51100]
 gi|321269715|gb|EFX52643.1| permease [Streptococcus cristatus ATCC 51100]
          Length = 364

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 112/337 (33%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLDKCRVPQKLQRSLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A        +   I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQLVQLIEGNIIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + G    GL+G+     + A+I  + +E ++  +E +
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEAE 359


>gi|291550779|emb|CBL27041.1| sporulation integral membrane protein YtvI [Ruminococcus torques
           L2-14]
          Length = 374

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 100/331 (30%), Gaps = 2/331 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +         ++  + L GF  P +   II   + P+ +    + +      + +  + V
Sbjct: 15  LFSIAATVGFVLIGWKLLGFLMPFVVGWIIASIATPVVNWLEKRLKIRKKLGSALIIIGV 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLS 128
           + L      F   + + E+  L+                +     G++    +      +
Sbjct: 75  LALMGTLGYFAVSWLVSEVSSLIKDFPEMYVQLEKGLHQIGISMSGIFSKLPDGIQNGWT 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +   L +   +     A         Y +S I  +++ +FF  +   +   +
Sbjct: 135 TTVANLDDTMGSLMSKISEPTVSAAGNIAKRVPSYLVSTIVAVMSSYFFISEREEVVTWV 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +           +   +   +   F     I     L+L        V   V    + 
Sbjct: 195 KQIAPKSVTERMIMVIDNLKYAVGGYFKAQFKIMGIVFLILAVGLGFLRVHYFVLSAFLI 254

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A +  +P     +         +    +    + +       IV + ++P LVG  + L 
Sbjct: 255 AFLDFLPFFGTGTAMIPWAIYAVFMGDYKRAIMLVVIYAITQIVRQLIQPKLVGDSVGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L T   +  G R  G++ + +   +  +I 
Sbjct: 315 PLVTLLLIYIGYRIGGVIWMILAVPVGMVII 345


>gi|94994287|ref|YP_602385.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
 gi|306827469|ref|ZP_07460753.1| membrane protein [Streptococcus pyogenes ATCC 10782]
 gi|94547795|gb|ABF37841.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
 gi|304430349|gb|EFM33374.1| membrane protein [Streptococcus pyogenes ATCC 10782]
          Length = 393

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +    F    + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|254492420|ref|ZP_05105592.1| conserved domain protein, putative [Methylophaga thiooxidans
           DMS010]
 gi|224462312|gb|EEF78589.1| conserved domain protein, putative [Methylophaga thiooxydans
           DMS010]
          Length = 356

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 117/348 (33%), Gaps = 8/348 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            M +   ++  +++ +     Y L     P   A ++ +   P+     +  + S T   
Sbjct: 8   KMSDINKLILVIVVIVSGWLFYQLSPVLMPFFIAALLAYLGDPLVDKLETW-KLSRTISV 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    +  +  + LL L      ++ +L + +         +       P  +      
Sbjct: 67  TLVFSVLFLVVSIMLLVLLPLLSAQVAKLFTNLPGYLTTLQKLIE-----PWLISVGLPT 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      + +           +  + +R GM+ L +  +++ + +  F+  RD   
Sbjct: 122 DVLNLQTLKQALSNYWSQVGEVAGGVFNYMTRSGMVLLQWVGNLVLIPVLTFYLLRDWDV 181

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +   L    +   + ++S     ++     G  ++     ++      L G+   + 
Sbjct: 182 LVARFRELLPRRYSGTFIQMSLECDDMLAGFIRGQLMVMFALAVIYTVGLTLIGLELALL 241

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LGVI  +++ +P    I    ++        G       + +  A    I    L P  V
Sbjct: 242 LGVIAGVVSFVPYLGLIVGIVLAGLAAFFQFGEWLPVLYVAIVFAAAQAIEGMVLTPRFV 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G  I L  +   F ++ G +  G  G+ +   + A++ V+ + +    
Sbjct: 302 GERIGLHPVAVIFAVLAGGQLFGFTGVLLALPVAAVVMVLLRHAHQRY 349


>gi|166032030|ref|ZP_02234859.1| hypothetical protein DORFOR_01732 [Dorea formicigenerans ATCC
           27755]
 gi|166028483|gb|EDR47240.1| hypothetical protein DORFOR_01732 [Dorea formicigenerans ATCC
           27755]
          Length = 456

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/375 (12%), Positives = 109/375 (29%), Gaps = 34/375 (9%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-----------------LYFLKGFFAPVLSALIIGFTS 44
           R      Q I R M +F+I+ +                 ++ +     PVL   +I +  
Sbjct: 37  RRPSRIRQQINRGMTVFVIVAACILFYFALLRLGHISDVIFKIIDVLKPVLYGCVIAYLL 96

Query: 45  WPIYSS--------FISKKEES-------STFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            PI              + ++         +    ++ + ++ L  V L  L       +
Sbjct: 97  NPIVKRVDAFLIPKLQERMKKPENAEKVSRSVGIFVSLIILIVLITVLLNMLIPELYSSI 156

Query: 90  KELVSKVVLANQHGIPVPR--WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           + +V  +       +       L D            +  +   +           + + 
Sbjct: 157 RNMVLTLPKQVNDALDKINSIQLEDSTTVAILKNALEEGTTMLTNWLRTDLMTQVNSLMS 216

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +            +  + +I  +  L+          + + +L           I+   
Sbjct: 217 NLTVGIFNVISEVFNMLIGVIVSVYILYSKEIFARQCKKAVYALFRADRANMVLHITTKS 276

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            ++     +G  + +   GL+      +  +P  + + VI  +  +IP   P      S 
Sbjct: 277 NEIFGGFVIGKILDSAIIGLLCFIGLTILNMPYTMLVSVIVGVTNVIPFFGPYIGAIPST 336

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   +        ++  +        L P ++G    L        ++ G    G +G
Sbjct: 337 ILIALEDPMKGVYFLIFILVLQQFDGNILGPKILGNSTGLSAFWVVTSILLGGGLFGFVG 396

Query: 328 LFIGPVLMALIAVIW 342
           + +G    A+I  I 
Sbjct: 397 MVMGVPTFAVIYYIV 411


>gi|326692552|ref|ZP_08229557.1| transport protein [Leuconostoc argentinum KCTC 3773]
          Length = 382

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 99/328 (30%), Gaps = 5/328 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P+                 +  ++++ L    +  L      ++  
Sbjct: 52  APILIAGVLYYLLSPLVKLLTRYTHIPRALAIGLILIAIIGLAAGLITMLVVVLRFQVMT 111

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +                           E      +      I       T G+  I  
Sbjct: 112 FIDNWPSYWHTSQNFINETFKSSQFKPVREFLNTTNTGINQNVIDWSKKYLTTGVAGISS 171

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            AS    + +            L++   DG   S  +            +++   + K I
Sbjct: 172 LASTLTSVGITAVS----TPFILYYMLLDGHKFSGFVAEKFPPKAQHSLRELLTDISKQI 227

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLL 270
                G   + +   ++ G  Y + G+P  + L ++     MIP    I     V I  L
Sbjct: 228 AKYIRGQLGVGLAVMIMFGIGYTVIGLPYGILLAMMAGFFNMIPYVGSILAQVPVFIVAL 287

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G       + +   IE  I    + P ++G  + +  +     L+ G    G+LG+ +
Sbjct: 288 IAGGPKLLILVIIVLVIEQPIEGHVIAPKILGDALAIHPVTVIVVLLTGAHIFGVLGVIL 347

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISS 358
           G    A++ V+        + N      
Sbjct: 348 GVPTYAVLKVLVTRIYTWWRSNSALFKE 375


>gi|74318619|ref|YP_316359.1| hypothetical protein Tbd_2601 [Thiobacillus denitrificans ATCC
           25259]
 gi|74058114|gb|AAZ98554.1| membrane protein, putative [Thiobacillus denitrificans ATCC 25259]
          Length = 352

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 88/347 (25%), Positives = 167/347 (48%), Gaps = 4/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + +    ++FI  ++ + L  F A +  A I+ + +WP+Y     +     T  A++
Sbjct: 9   LARRAVAFAFLVFIFGLTFWVLSPFLAALAWAGILAYATWPLYQRLSRRLAGRDTLCALL 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T++V+ + ++P++++      ++    +++ L    G+P          G         
Sbjct: 69  MTIAVVTMLLLPMIWVTSMLAGDVSAASAQLRLVATEGLPPLPPGVRSWPGGDWLAAQYA 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    +        L       +   A   G     + L     + ALFF +R G S+ 
Sbjct: 129 RIQADPAWVRAQIDALGLTDAQRLKAVAGGVGRNVAKFAL----AVFALFFLFRHGASLL 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            Q+  +         +     V   +R+   G+ + A+ +G +    YW+AGV + V  G
Sbjct: 185 SQVRRVATRWLGGAARGYIHAVGVTVRAVVFGIVLTALAQGALAALGYWVAGVAAPVLWG 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VITA++A+IP   P+ +  +S+ LL +G    A  LFLWGA+ +  VD  +RP ++ GP 
Sbjct: 245 VITALVALIPFVGPVVWIGLSLSLLAQGESQAALGLFLWGALVVSWVDNLIRPLVISGPT 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++PFL  F G++GG++  GL+GLF+GP L+A+   IW+E ++ ++ +
Sbjct: 305 RIPFLLVFLGVLGGLQAFGLIGLFLGPALLAISVAIWREWLVRVESS 351


>gi|325676547|ref|ZP_08156225.1| integral membrane protein [Rhodococcus equi ATCC 33707]
 gi|325552725|gb|EGD22409.1| integral membrane protein [Rhodococcus equi ATCC 33707]
          Length = 413

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 112/346 (32%), Gaps = 14/346 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +   ++   L  L     PV+ A+++    WP   +   +        A I  +  
Sbjct: 37  AAIAIGALVVGWILQKLWVIALPVMLAIVVSTVLWPPTRALTKR-GVPPAGAASITLLIF 95

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             LF   +  +    + +  EL +K     Q                W            
Sbjct: 96  FALFGGVVALIVPSVVDQAPELANKATQGIQQVQD------------WLKGPPVNLQDDQ 143

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + + T         I               +++  ++I  FFF +DG      L  
Sbjct: 144 IDTAVHAITSKLQESGTAIASGVFTGVTTAGSMVVTLFLVLILAFFFVKDGPRFIPWLHG 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       + +++   +   +        ++++ + + +G+   + GVP    L ++T I
Sbjct: 204 VSGGRAGRHLEEVLGRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFI 263

Query: 251 MAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +P        A+++ + +    +  A  +         I    L+P L    +KL  
Sbjct: 264 GGFVPIVGAFVAGALAVLVALVANGLTTALIVLAIIIAVQQIEGNVLQPVLQSKSMKLHA 323

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +     +  G    G++G F+   + A+ AV+ +     I E  ++
Sbjct: 324 VVVLLAVTAGSSLFGIVGAFLAVPVAAVGAVVIRYLGEQIDERLQE 369


>gi|330981355|gb|EGH79458.1| hypothetical protein PSYAP_22717 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 354

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 140/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|330811201|ref|YP_004355663.1| hypothetical protein PSEBR_a4251 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379309|gb|AEA70659.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 357

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 121/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +Y L     P L AL++ +   P+      K   S T+  V
Sbjct: 1   MGDTRRWFWLGGVALLIALIYLLHPILTPFLVALLLAYLFDPVVDRLE-KLGLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   +    LL L      ++  L               +  +             
Sbjct: 60  AVFALFTLIVGALLLVLIPMLAKQLLRLYELAPQML----DWLQHSAVPWVQSKLGLADG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I       T+ +  +   A+  G+  + +  +++ + +  F+  RD   +
Sbjct: 116 FWKFDKVKAAISEHMGQTTDIVGVVLSQATASGLALIGWLANLVLIPVVAFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++ SL           ++    +V+ +   G  ++ +  G +  +   L G+   + +
Sbjct: 176 MAKIRSLLPRHREERIMTLTGECHEVLGAFVRGQLLVMVALGFIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G+I  + A++P    +     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GLIAGLAAIVPYMGFVIGIGAALIAGLFQFGGDLYPMVGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K++ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSD 347


>gi|281492409|ref|YP_003354389.1| permease [Lactococcus lactis subsp. lactis KF147]
 gi|281376073|gb|ADA65564.1| Permease [Lactococcus lactis subsp. lactis KF147]
          Length = 371

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 117/359 (32%), Gaps = 9/359 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +   +++F++    +  +         F P + A  + +   P+ +    K   
Sbjct: 9   FWTVEILAVTLLIFLLSQIDFVFQPIKTLLTLLFVPFIIAGFLYYVFNPVVTFMEEKLRI 68

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  I  + ++ + I  +  +    + ++  L++    A          L   P   
Sbjct: 69  KKVLGIFIVLLLILGMIIFAIASVIPSLISQLTSLINATGKAYPQVRAWIEGLQHNPRFA 128

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +     ++       LS T +  N ++ I         I     + +I + I L++ 
Sbjct: 129 QIYDQLD--VNSLVEKLNLSYTDILHNLLNSITVSVGSIVGIITSIVMVMILVPILLYYM 186

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG  I   L             ++   +   I     G+ + A+   +V+   Y + G
Sbjct: 187 LKDGEKIIPFLKENVLTEDRLNIFELLENMNHTISRYISGVALDALLVFIVVFIGYMVLG 246

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P      +   +  +IP   P       I  +       A    ++  +   +    + 
Sbjct: 247 IPYAFLFALFAGVTNLIPYVGPYIGVLPMIVTVAFNRPVTALIAVIYVLVLQQLDGNLVY 306

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P +VG  +K+  +     ++      G+LG+ I      L+  I K +      +K + 
Sbjct: 307 PKIVGSAVKVHPVTVMILMLISGSLYGILGMIIAVPAYCLVKEIVKFANSLYNNHKAEQ 365


>gi|157150736|ref|YP_001450934.1| membrane protein [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075530|gb|ABV10213.1| membrane protein [Streptococcus gordonii str. Challis substr. CH1]
          Length = 374

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 111/339 (32%), Gaps = 6/339 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  +     P L A  + + + P+        + +     ++    +    ++ +
Sbjct: 30  LITPVISVVNTILIPFLIAGFLYYIANPLVVFLEKYLKLNRVLGVLLTLTILFGSIVLAV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L++       +       L+  P     +      +        LS 
Sbjct: 90  IYLLPILVTQLTSLINSSQNLYSYVYSWVNDLAQNPVFKNLN------IQSTLQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           ++    II   I L +F  DG  +   L+         
Sbjct: 144 IDILRNILNGVTNSLGSVVSAVINTVFIIIMTPIFLVYFLLDGHKLLPMLERSILKRDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               + + +   +     G++I A+  G +    Y   G+   +   + +++  +IP   
Sbjct: 204 NISSLLKNLNATVSRYISGISIDAVIIGCLAYIGYSTIGIKYALVFAIFSSLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I      +        ++  I   I    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMIISHAFTDPKRMLIAVIYMLIVQQIDGNILYPRIVGGVMKVHPITIMVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                G++G+ +     ++I  I K        +KE   
Sbjct: 324 SSNIYGIIGMIVAIPTYSIIKEIVKFLANLYDNHKEAQE 362


>gi|71909098|ref|YP_286685.1| hypothetical protein Daro_3486 [Dechloromonas aromatica RCB]
 gi|71848719|gb|AAZ48215.1| Protein of unknown function UPF0118 [Dechloromonas aromatica RCB]
          Length = 375

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 144/355 (40%), Gaps = 7/355 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                   +    I+ +I +S++ L  F A  + A++I   +WP++ S  S+        
Sbjct: 4   RRDPARNTLAILCILGLIGLSVWVLLPFLAATVWAVMIVVATWPLFKSLESRLGNRRAPA 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG--GMWAS 120
            V+ +V+++ L ++PL       +    +L +       +G+P P          G   +
Sbjct: 64  VVLMSVAMLLLLVLPLWLAVDTIIEHSGQLAAAGKSMAANGLPPPPAWVKTLPLVGDRVA 123

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W +  +   S  +   T    +   ++   A   G + + + L +    I     Y  
Sbjct: 124 SAWAQLDAAGTSGIVTKVTPYAADTGKWVLAQAGSVGGMLIQFLLVVTIAAI----LYSG 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G + ++     G  L     +    +  + IR   LG+ + AI + ++ G    +AGVP 
Sbjct: 180 GETGARTARRFGRRLAGDRGENSIILAGQAIRGVALGVGVTAIVQTVLGGVGLAVAGVPF 239

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L  +  ++ +   G  +       ++   G+   AT L +W  I   + D  LRP L
Sbjct: 240 ASLLSAVMLMLCIAQIGPMLVLLPAVGWMYWMGDSGWATLLLVWSLIVGSL-DNFLRPML 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +     LP L  F G++GG+ + GL+G+F+GPV++A+   +    I       E 
Sbjct: 299 IKRGADLPLLLIFAGVIGGMLSFGLIGIFVGPVVLAVTYTLTLAWIEDALGKDEP 353


>gi|254827854|ref|ZP_05232541.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|284801239|ref|YP_003413104.1| hypothetical protein LM5578_0989 [Listeria monocytogenes 08-5578]
 gi|284994381|ref|YP_003416149.1| hypothetical protein LM5923_0943 [Listeria monocytogenes 08-5923]
 gi|258600235|gb|EEW13560.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|284056801|gb|ADB67742.1| hypothetical protein LM5578_0989 [Listeria monocytogenes 08-5578]
 gi|284059848|gb|ADB70787.1| hypothetical protein LM5923_0943 [Listeria monocytogenes 08-5923]
          Length = 378

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|29829776|ref|NP_824410.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29606885|dbj|BAC70945.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 440

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 92/321 (28%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +           ++AL+I     P  +               +  
Sbjct: 84  WRLLVLAGTVWVLMRVISAVQLVVLAFVAALLITALLQPTVARLTRH-GVPRGLATALTA 142

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +   F+ +  M  +  L ++V                     W         
Sbjct: 143 ILGFVVMGLIGWFVTWQVMENIDNLSNQVQDGIDELRK------------WLLNSPFHVT 190

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         D I         + ++    I+  + +  F   DG  I + 
Sbjct: 191 PKQINEIAKNLREAVGANTDQITSAGLEGVTVIVEALTGILLTMFSTLFLLYDGRRIWEW 250

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  I+A+ + + +G   +   VP  V L V 
Sbjct: 251 TLKLVPSAARPGVAGAGPRAWRTLTAYVRGTVIVAMIDAIFIGLGIYFLDVPMAVPLAVF 310

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   +F A            I    L+PF++G  ++
Sbjct: 311 IFLFAFIPLVGAVVSGALAVVVALVTQGVFTAVLTLAVVLAVQQIEGHILQPFILGRAVR 370

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 371 VHPLAVVLSVAAGGMVAGIGG 391


>gi|324990266|gb|EGC22204.1| permease [Streptococcus sanguinis SK353]
          Length = 364

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 112/342 (32%), Gaps = 7/342 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---SKKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLEKCRVPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPGKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           + G    GL+G+     + A+I  + +E ++  +E K  I  
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKKALIKE 364


>gi|28899250|ref|NP_798855.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|153838395|ref|ZP_01991062.1| putative permease [Vibrio parahaemolyticus AQ3810]
 gi|260362174|ref|ZP_05775164.1| putative permease [Vibrio parahaemolyticus K5030]
 gi|260879054|ref|ZP_05891409.1| putative permease [Vibrio parahaemolyticus AN-5034]
 gi|260895929|ref|ZP_05904425.1| putative permease [Vibrio parahaemolyticus Peru-466]
 gi|260903440|ref|ZP_05911835.1| putative permease [Vibrio parahaemolyticus AQ4037]
 gi|28807474|dbj|BAC60739.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748202|gb|EDM59061.1| putative permease [Vibrio parahaemolyticus AQ3810]
 gi|308085368|gb|EFO35063.1| putative permease [Vibrio parahaemolyticus Peru-466]
 gi|308089577|gb|EFO39272.1| putative permease [Vibrio parahaemolyticus AN-5034]
 gi|308106571|gb|EFO44111.1| putative permease [Vibrio parahaemolyticus AQ4037]
 gi|308111062|gb|EFO48602.1| putative permease [Vibrio parahaemolyticus K5030]
          Length = 361

 Score =  132 bits (333), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 139/357 (38%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +P++  F  K  +     +
Sbjct: 6   KITSSHRVLMIALLAAAFACYLLVEPYINSIVMAFIISLLMFPVHEWFERKMPKHKNSAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           ++  V +  + ++PLLF+F   + +             +G I        +  G+     
Sbjct: 66  LLTCVVLTFIIVIPLLFVFAAIVQQGSVFSQNTYKWVTNGGIQDIFQHPWVIKGLSIVNE 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++      ++ +    M+  LFF  RD  
Sbjct: 126 YLPFDKIEPKAIAEKIGQFATTFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   + YL + G++  A  L  W  + +  +D  LRP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTAWSVVIVGSIDNLLRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+   +  ++
Sbjct: 305 GSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLNQQDNS 361


>gi|254832124|ref|ZP_05236779.1| hypothetical protein Lmon1_12289 [Listeria monocytogenes 10403S]
          Length = 378

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|70731365|ref|YP_261106.1| hypothetical protein PFL_4009 [Pseudomonas fluorescens Pf-5]
 gi|68345664|gb|AAY93270.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 353

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 137/326 (42%), Gaps = 3/326 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++ L  F+  +  A+I+G    P+     ++        ++   +  + + I+P++   
Sbjct: 22  FIWILLPFYGALFWAVILGIVFAPLQRRLQARFGWQRNLTSLCTLLICLVIAILPVIITS 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E  EL  K+                     +   L    L   + L+        
Sbjct: 82  VLLVQEGAELYKKIESGQLDIAAYLAQFKHSLPPYFQHLLDRFGLGELKGLQEKVVKSAM 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G  ++   A  FG    ++ +S   M+  LFFF RDG  + +++ +    L     ++
Sbjct: 142 Q-GSQYLATQAFSFGQGTFEFVVSFFIMLYLLFFFLRDGPELVRKIRTAVP-LAEYQKRR 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-IS 261
           +     +V+R+T  G  ++A+ +G + G  +W   +PS +   V+ A ++++P     I 
Sbjct: 200 LQLKFNRVVRATVKGNVLVAVTQGALGGLIFWFLDIPSALLWAVLMAFLSLLPAVGAGIV 259

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  V+ Y LI G I+    L L+G   + +VD  LRP LVG   K+P        +GG+ 
Sbjct: 260 WGPVAAYFLISGAIWQGVVLGLFGVFVIGLVDNLLRPILVGKDTKMPDYLILISTLGGLA 319

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIM 347
             GL G  IGP++ AL    W   + 
Sbjct: 320 IFGLNGFVIGPLIAALFMSSWALFVE 345


>gi|327489296|gb|EGF21089.1| permease [Streptococcus sanguinis SK1058]
          Length = 392

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 114/346 (32%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      I  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITIVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +         +    ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADKFIDDVVTKYISADFNPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  +N       +A           ++II M   LF+  RDG ++   +       
Sbjct: 161 DW----ASNFSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRESFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   +E  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|307823634|ref|ZP_07653863.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307735619|gb|EFO06467.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 351

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 124/342 (36%), Gaps = 7/342 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + Q  + +  +      +Y L     P   A ++ +   P+     +  + S T   +
Sbjct: 1   MTDSQKWLVFAFISGSAWLVYLLAPVLMPFAFAAMLAYLGDPLTDKLETY-QLSRTKAVL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    +  +F++ LL L      +++  VS +              +     +    +  
Sbjct: 60  VVFSVMTLVFVLVLLLLVPLLEYQVEHFVSNLPAYVAWLNETVIPWTQRRFHLGIRPVNL 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             + +     + S           +    S  G +  ++ ++++ + +  F+  RD   +
Sbjct: 120 NQIIN----LVKSHWEQAGGIAATLMSSVSHSGGVIAEWLMNLLLIPVVTFYLLRDWDGL 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++  L          K++  V  V+ +   G   + +  G +     W+ G+   + +
Sbjct: 176 IAKVHDLLPRRVAPTATKLAGEVDTVLAAFVRGQFYVMLALGGIYSIGLWMTGLDVALLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G++  +++ +P    I    ++    L+    +     + +   I   +    L P LVG
Sbjct: 236 GMLAGLVSFVPYLGSIVGIVMACVAALVQFHELIQLVPVAIVFIIGQSLEGMVLTPMLVG 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I L  +   F ++ G +  G LG+ +   + ++I V+ + 
Sbjct: 296 DKIGLHPVAVMFAVLAGGQLFGFLGILLALPVASVIMVLLRH 337


>gi|262282562|ref|ZP_06060330.1| membrane protein [Streptococcus sp. 2_1_36FAA]
 gi|262261853|gb|EEY80551.1| membrane protein [Streptococcus sp. 2_1_36FAA]
          Length = 388

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F+     PV+ A ++ +   P+      + + +      I  V +  L I
Sbjct: 42  ISFVFTPIIEFISVIMLPVILAGLLYYLLNPLVDMMEKR-KINRLVAITIVFVLITVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +    +   L D       SE +   +        
Sbjct: 101 WGLAVVIPNLQTQIVSFFRNMPAYLKQSKKIIDDLLD----SRLSEEFRPQIEQVTDNIS 156

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +N       +AS F        +++I M   LF+  RDG ++   +       
Sbjct: 157 SQLTTWASNFSARAVNWASNFVSAASQVIVAVIIMPFILFYLLRDGKNLKGYVTQFLPKK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V   + +   G   +AI    +    + + G+   V L V+  ++ ++P
Sbjct: 217 LREPVGQVLSEVNSQLANYVRGQITVAIIVAFMFMILFKIIGLRYGVTLAVVAGVLNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLSIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVITAIFKWYK 371


>gi|194364749|ref|YP_002027359.1| hypothetical protein Smal_0971 [Stenotrophomonas maltophilia
           R551-3]
 gi|194347553|gb|ACF50676.1| protein of unknown function UPF0118 [Stenotrophomonas maltophilia
           R551-3]
          Length = 389

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 127/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +   +I   ++ L     P + AL + +   P+     +    S     V+   
Sbjct: 14  RRLKYILFAGLIGWIVWLLAPILTPFVLALALAWLGDPLVDRIEA-TGRSRMTGVVLVFA 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ + +  LL L      ++  L++    A      +              E+      
Sbjct: 73  AMVLVIVALLLVLVPMIERQITTLIAVAPQAQAW---LMEKGIPWFEQKTGLEVMQWMDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S              + SR G   + + ++I+ + I  F+F RD   + +++
Sbjct: 130 DRLIEWVRSHWQQAGGFATTFMGYVSRSGFAMVTWVVNILLLPILAFYFLRDWDKLVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+           ++R   +V+ +   G  ++ +  G++      L G+   + +G+I 
Sbjct: 190 ASVIPRNQIGTISALARESNEVLGAFIRGQFLVMLALGVIYAGGLSLVGLKLGLLIGLIA 249

Query: 249 AIMAMIPGGAP----ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP        +     ++      ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGATTGILMAIVAALVQAQGFDLKLLILVGVVFTVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G LG+ +   + A+  V+ + +    ++++
Sbjct: 310 IGLHPVAVIFAVMAGGQLFGFLGMLLALPVAAVTNVLLRYAHQRYRQSE 358


>gi|328474213|gb|EGF45018.1| putative permease [Vibrio parahaemolyticus 10329]
          Length = 361

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 139/357 (38%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +P++  F  K  +     +
Sbjct: 6   KITSSHRVLMIALLAAAFACYLLVEPYINSIVMAFIISLLMFPVHEWFERKMPKHKNSAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           ++  V +  + ++PLLF+F   + +             +G I        +  G+     
Sbjct: 66  LLTCVVLTFIIVIPLLFVFAAIVQQGSVFSQNTYKWVTNGGIQDIFQHPWVIKGLSIVNE 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T     +   +++      ++ +    M+  LFF  RD  
Sbjct: 126 YLPFDKIEPKAIAEKIGQFATTFGSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHIMP-LSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   + YL + G++  A  L  W  + +  +D  LRP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTAWSVVIVGSIDNLLRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+   +  ++
Sbjct: 305 GSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLNQQDNS 361


>gi|297250462|ref|ZP_06864359.2| acetyltransferase, GNAT family [Neisseria polysaccharea ATCC 43768]
 gi|296838854|gb|EFH22792.1| acetyltransferase, GNAT family [Neisseria polysaccharea ATCC 43768]
          Length = 366

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 124/337 (36%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + +++   + L    AP   A ++ +   P+      K   +    ++   +  + L 
Sbjct: 27  VFLTVLIWLAFILGDTLAPFAVAAVLAYVLDPLVEWLQKK-GFNRAVASMTVMIFALLLL 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              LL +    + +   +VS++                +P        + +         
Sbjct: 86  AALLLIIVPMLVGQFNSMVSRLPQLAGFMQNTL-----LPLLKETVGNYVEIDQASVIAW 140

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R     +    +++ + + L++F  D    S  +  L   
Sbjct: 141 LQAHTGELSNTLKAWFPVLMRQSSNIVSSIGNLMLLPLLLYYFLLDWQRWSCGISKLVPR 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 201 RFADTYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMLAGILVFV 260

Query: 255 PGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++    +    +      +++  A+  F+    + P +VG  I L     
Sbjct: 261 PYLGAFTGLLLATVAALLQFASWNGILAVWVVFAVGQFLESFFITPKIVGDRIGLSPFWV 320

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 321 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 357


>gi|324990909|gb|EGC22844.1| permease [Streptococcus sanguinis SK353]
          Length = 392

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 113/346 (32%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      I  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITIVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +              ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADKFIDDVVTKYISADFKPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  +++     S    I +        M   LF+  RDG ++   +       
Sbjct: 161 DWASNFSSRAVNWAGNLISTTSQIVVAII----IMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRESFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   +E  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|261209281|ref|ZP_05923673.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289567000|ref|ZP_06447401.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|293553987|ref|ZP_06674589.1| transport protein [Enterococcus faecium E1039]
 gi|294615275|ref|ZP_06695152.1| transport protein [Enterococcus faecium E1636]
 gi|294617337|ref|ZP_06696976.1| transport protein [Enterococcus faecium E1679]
 gi|260076827|gb|EEW64562.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161201|gb|EFD09100.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|291591872|gb|EFF23504.1| transport protein [Enterococcus faecium E1636]
 gi|291596410|gb|EFF27664.1| transport protein [Enterococcus faecium E1679]
 gi|291601844|gb|EFF32094.1| transport protein [Enterococcus faecium E1039]
          Length = 379

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 114/324 (35%), Gaps = 7/324 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    L  L   F P+L A  I +   PI       +     F  ++  + V+ L ++ +
Sbjct: 33  IFSPILKMLSAIFLPLLVAGFIYYMFDPIVVFLEKHR-IPRVFGFLLTFLVVIILVVLTV 91

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    M +  +L   +             L+         E    +L    +   LS 
Sbjct: 92  MNVVPQLMEQTIQLTQSLPTYADETSKWLNELAQR------EEFKNFNLEEQLASANLSL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + L    +  +    S+     + + + +  +   L F ++DG      L          
Sbjct: 146 SNLFNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRK 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   
Sbjct: 206 ELRQTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G
Sbjct: 266 PFIGAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIG 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
                G+LG+ I   + A+I  I 
Sbjct: 326 AGSVAGILGMLICIPVYAVIKTII 349


>gi|163737418|ref|ZP_02144835.1| hypothetical protein RGBS107_17843 [Phaeobacter gallaeciensis
           BS107]
 gi|161388944|gb|EDQ13296.1| hypothetical protein RGBS107_17843 [Phaeobacter gallaeciensis
           BS107]
          Length = 355

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 124/342 (36%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   +I V L+ L     P +    I +   PI     S    S T    + TV  M LF
Sbjct: 14  IAAVVIAVVLWALGDVLLPFVLGAAIAYLIDPIADRLES-MGLSRTAATAVITVFAMLLF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +V LL +    + +M +L   +  A ++     +           +       S  Q   
Sbjct: 73  VVILLVVVPTLIYQMLDLAKVLPEAFKNLRDFVQ---------QQAPSLFDEGSRAQQTI 123

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +     L++  I  +         + ++  +  + + +   +   D   +  ++D L   
Sbjct: 124 VSIAQTLQSKAIGVLEGVVGSAVSL-VNVLILFVIVPVVAVYLLLDWDRMVARIDELLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + KV+ S   GM  + +  G     A  L G+   +A+G I  ++  I
Sbjct: 183 DHAPTIRELAARIDKVLASFIRGMGTVCLILGTYYAVALMLVGLNFGLAVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +    ++I L      G+ ++   +    AI   I    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGVLAIGLALFQFWGDWWSIGMVAGVFAIGQVIEGNFLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + VI +  +    +++
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVIARFLVEQYLDSR 344


>gi|327459873|gb|EGF06213.1| permease [Streptococcus sanguinis SK1057]
          Length = 392

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 113/346 (32%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      +  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITVVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +              ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADKFIDDVVTKYISADFKPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  +++     S    I +        M   LF+  RDG ++   +       
Sbjct: 161 DWASNFSSRAVNWAGNLISTTSQIVVAII----IMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRESFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   IE  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIIEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|256003588|ref|ZP_05428577.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
 gi|255992379|gb|EEU02472.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
 gi|316939792|gb|ADU73826.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           1313]
          Length = 349

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 110/319 (34%), Gaps = 5/319 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              PVL   +I +   PI     SK   S T   ++  +    L    ++F+    +   
Sbjct: 34  IIFPVLLGAVIAYILRPIVLKLESK-NISRTKSIIMIYLVFGILLTTAVIFIAPIFVDNT 92

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +E ++ V             +  +      S      + +  +  +     +  + +   
Sbjct: 93  REFINTVPEITTEYGEKFNKILKMIDTSGWSAEVKNAIYNEINNGVNIAENMLMDALRKT 152

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +  +      +  L +I       +  +D     +   SL    +        R + +
Sbjct: 153 LVWLFKSLTGISNIILGMIIAY----YIMKDAEFFKKGALSLVPRRWRNEIIGTCREINE 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           ++     G  + A+  G++   A  + GV     LG I  I  +IP   P      S+ +
Sbjct: 209 ILSCFIQGQLLTALIIGIMETVALAIIGVKYSPILGFIGGISNIIPYFGPFIGAIPSVAV 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +   A    +   +   I +  + P ++ G + L  + T   ++ G    G++G+ 
Sbjct: 269 ALIDSPVKAFWTVVAFLVIQQIDNAFISPKIIEGRLGLHPITTILAVLAGGEFFGIIGML 328

Query: 330 IGPVLMALIAVIWKESIMA 348
           +   + A++ VI K  I A
Sbjct: 329 VAVPVTAVLKVILKRLIEA 347


>gi|148379812|ref|YP_001254353.1| hypothetical protein CBO1852 [Clostridium botulinum A str. ATCC
           3502]
 gi|168180430|ref|ZP_02615094.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|226949096|ref|YP_002804187.1| hypothetical protein CLM_2012 [Clostridium botulinum A2 str. Kyoto]
 gi|148289296|emb|CAL83392.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|182668893|gb|EDT80871.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|226842378|gb|ACO85044.1| putative membrane protein [Clostridium botulinum A2 str. Kyoto]
          Length = 364

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 110/328 (33%), Gaps = 1/328 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I   +        P + A  I +   P+   F +K +    F  +I  + V+ L I+ + 
Sbjct: 32  IYSFMKSFLSILVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFIN 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  + +L           I                    +  ++  +L     +
Sbjct: 92  TFVPKIIKNIGDLFVHSPDYINQTIQWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI-S 150

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    ++       +F    + +   +I  I  L        ++ + + +L      + 
Sbjct: 151 NLTNTFLNTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALSGEKNYSK 210

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                + V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P
Sbjct: 211 ILSFFKEVDIVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGP 270

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +  + +  N   A  + ++  I        L P ++G  + L  +   F +  G
Sbjct: 271 FIGMIPAFIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIG 330

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIM 347
             T G++G+F+   + A+I +   + I 
Sbjct: 331 GGTFGVMGMFLSVPIAAIIKIYLDKYIE 358


>gi|15673797|ref|NP_267972.1| permease [Lactococcus lactis subsp. lactis Il1403]
 gi|12724842|gb|AAK05913.1|AE006411_8 permease [Lactococcus lactis subsp. lactis Il1403]
 gi|326407304|gb|ADZ64375.1| permease [Lactococcus lactis subsp. lactis CV56]
          Length = 371

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 117/359 (32%), Gaps = 9/359 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +   +++F++    +  +         F P + A  + +   P+ +    K   
Sbjct: 9   FWTVEILAVTLLIFLLSQIDFVFQPIKTLLTLLFVPFIIAGFLYYVFNPVVTFMEEKLRI 68

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  I  + ++ + I  +  +    + ++  L++    A          L   P   
Sbjct: 69  KKVLGIFIVLLLILGMIIFAIASVIPSLISQLTSLINATGKAYPQVRAWIEGLQHNPRFA 128

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +     ++       LS T +  N ++ I         I     + +I + I L++ 
Sbjct: 129 QIYDQLD--VNSLVEKLNLSYTDILHNLLNSITVSVGSIVGIITSIVMVMILVPILLYYM 186

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG  I   L             ++   +   I     G+ + A+   +V+   Y + G
Sbjct: 187 LKDGEKIIPFLKENVLTEDRLNIFELLENMNHTISRYISGVALDALLVFIVVFIGYMVLG 246

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P      +   +  +IP   P       I  +       A    ++  +   +    + 
Sbjct: 247 IPYAFLFALFAGVTNLIPYAGPYIGVLPMIVTVAFNRPVTALIAVIYVLVLQQLDGNLVY 306

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P +VG  +K+  +     ++      G+LG+ I      L+  I K +      +K + 
Sbjct: 307 PKIVGSAVKVHPVTVMILMLISGSLYGILGMIIAVPAYCLVKEIVKFANSLYNNHKAEQ 365


>gi|325687852|gb|EGD29872.1| permease [Streptococcus sanguinis SK72]
          Length = 392

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 113/346 (32%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      I  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITIVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +              ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADKFIDDVVTKHISADFKPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  +N       +A           ++II M   LF+  RDG ++   +       
Sbjct: 161 DW----ASNFSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRESFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   IE  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIIEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|284044322|ref|YP_003394662.1| hypothetical protein Cwoe_2868 [Conexibacter woesei DSM 14684]
 gi|283948543|gb|ADB51287.1| protein of unknown function UPF0118 [Conexibacter woesei DSM 14684]
          Length = 400

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 93/331 (28%), Gaps = 12/331 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             +Y L+   + ++ A  I        +    K         ++A + ++ + I     +
Sbjct: 50  YLVYRLRTPLSWIVIATFIAVALSGPVNLMSRKM--PRGIAILLAYLGLIAIPIGIAAIV 107

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V                +       ++  +     + L    +   
Sbjct: 108 IPPLVEEATNLADDVPGYVNDLQEWVNNNERLKDLDRQYDIVDRLRERAEELPNHLDD-- 165

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                       S  G   +    +   ++I   F    G                   +
Sbjct: 166 -------AASTLSDVGGTIVGSLFAAFNILILSIFMVASGRRWVDLAIGFARPEHVPRIR 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           +    +   + +   G  + A   G+       + GVP    L V+TA+  +IP     I
Sbjct: 219 RAVDRIGIAVGNYVGGALLQATIAGVTTFVVLTILGVPFAAPLAVLTALFDLIPLVGATI 278

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +   V I               +W      I +  ++P +    +++        ++ G 
Sbjct: 279 AAVLVGIVTAFHDFPVATIVWVIWAIAYQQIENNVIQPQIQRRAVEIHAFAVLVSVLFGA 338

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              G++G  +   + A I +  +E     + 
Sbjct: 339 TLFGIVGALLAIPVAASIQIALREWWDYRQA 369


>gi|227551099|ref|ZP_03981148.1| permease [Enterococcus faecium TX1330]
 gi|257888973|ref|ZP_05668626.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896721|ref|ZP_05676374.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|293378639|ref|ZP_06624799.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|293572911|ref|ZP_06683861.1| hypothetical protein EfmE980_2615 [Enterococcus faecium E980]
 gi|227179760|gb|EEI60732.1| permease [Enterococcus faecium TX1330]
 gi|257825029|gb|EEV51959.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833286|gb|EEV59707.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|291607039|gb|EFF36411.1| hypothetical protein EfmE980_2615 [Enterococcus faecium E980]
 gi|292642770|gb|EFF60920.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 393

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 115/337 (34%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 40  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 98  LGSVWLVPFLEEQTKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFTSIDDVTSDIA 157

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+          I  FF  R+     Q + ++    
Sbjct: 158 GFIGNYWESGAQRISNIFSTVTAIFITLFTG----PIVTFFLLRNPQKFYQSVLAIVPPA 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 214 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 274 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 334 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 370


>gi|153810088|ref|ZP_01962756.1| hypothetical protein RUMOBE_00469 [Ruminococcus obeum ATCC 29174]
 gi|149834266|gb|EDM89346.1| hypothetical protein RUMOBE_00469 [Ruminococcus obeum ATCC 29174]
          Length = 407

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 109/351 (31%), Gaps = 17/351 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------------EESSTFLAVIAT 67
           I   +  +     P L   +I +   PI +    +             +        IA 
Sbjct: 10  IAAGIQLVFNILKPFLYGALIAYLLAPICNRMDERFLKWFPKATEKQKKGLKFLSIAIAV 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL----SDIPGGMWASELW 123
           +  + + ++ +L +         +++  +     +   +   L     ++          
Sbjct: 70  ICAVTIVVLLILLILPQVWDSTVKIIKILPARLAYCNRMIDQLLKDQPELQTYFNHFSSQ 129

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            ++  +       S        ++ I         +F +  L  +  +  L      G  
Sbjct: 130 VENGLNDVLKANSSMMTTIQGIVNNITVQLIEVLSVFKNMFLGFLIAVYLLASRKLFGAQ 189

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L  +  + +    ++      K+    F+G  I +   GL+  +   L G  S   
Sbjct: 190 AKLLLYGIFSNKWAKIIEEEVHYTDKMFNGFFVGKIIDSAIIGLICFAGTTLLGFESAAF 249

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + V+  +  +IP   P         LL+ G+  ++A    ++  I   +    + P ++G
Sbjct: 250 ISVVIGVTNIIPFFGPFIGAIPCALLLLLGSNPWDALYFLIFIVILQQVDGNIIGPKILG 309

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               +      F ++      GL+G+ I   L  +I  I ++      +  
Sbjct: 310 NTTGVSSFWVLFSILLFGGLWGLVGMVIAVPLFGVIYDIIRKLTARGLKRN 360


>gi|288802984|ref|ZP_06408420.1| membrane protein [Prevotella melaninogenica D18]
 gi|288334501|gb|EFC72940.1| membrane protein [Prevotella melaninogenica D18]
          Length = 374

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 46/364 (12%), Positives = 120/364 (32%), Gaps = 16/364 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+T+   + I   +I   ++   +    L G   P   A ++ +  +PI      K   
Sbjct: 1   MRQTITFDKFIRWALIALAVITVGFIINALSGVLLPFFIAWLLAYLLYPIVKFVQYKLHV 60

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I  + V  LF    LF+    + ++ + ++ V              + I   
Sbjct: 61  PGRALSIIITFLLVAALFTAIFLFIVPPMINQVDKFMTIVNRYLHETTHTNDIATMIQKW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +                   +   ++    ++  FF
Sbjct: 121 IRENQTEIERFLKSPDFTNTIKTAMPKIFS------VIGQTASIVISIIASCITLLYTFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++     +       +W  +++   + + +   G  ++++  G++    + + 
Sbjct: 175 ILLDYEVLTNNWIRIFPKNVRPFWAGLAQDAERELNNYIRGQGLVSLCMGILFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELF 290
             P  + +G++  I+ ++P     +    +   L       +          +  A+   
Sbjct: 235 DFPMAIGMGILIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFASALIVFAVVQL 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL I   L  LI   W+  +    
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEG 354

Query: 351 ENKE 354
           +  +
Sbjct: 355 DGAQ 358


>gi|163816686|ref|ZP_02208049.1| hypothetical protein COPEUT_02876 [Coprococcus eutactus ATCC 27759]
 gi|158447943|gb|EDP24938.1| hypothetical protein COPEUT_02876 [Coprococcus eutactus ATCC 27759]
          Length = 550

 Score =  132 bits (332), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 37/349 (10%), Positives = 104/349 (29%), Gaps = 32/349 (9%)

Query: 2   RETMLNPQGIMRWMIMFIIL-----------VSLYFLKGFFAPVLSALIIGFTSWPIYSS 50
           R  +     ++  +++ ++              +  + G FAP++   +I F   P+   
Sbjct: 13  RRILNISLAVIGIIVVGLLFNKILEQWAGFRAIIDKISGAFAPIIVGAVIAFLMNPVLVF 72

Query: 51  FIS----------------KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           F                    + S T   ++ T+  + +    +  +       +K+LV 
Sbjct: 73  FDRLFHTIFQDKVITDKKKLFKVSRTLSVILTTIVFLGIITGVVWLVVPQLYDSIKQLVG 132

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASE-----LWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +     +   +   +++    +   E              Q +            +  I
Sbjct: 133 NMDNYYSNLQNMVENINEKFQKLNIPEDELNKYMNTAYLKLQDMLNTKIMPNVDKIVVNI 192

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                       ++ + I+  I  +           + + ++ +             + +
Sbjct: 193 GSGVFSGLKFLYNFLIGIVASIYVMANKEYLASRGKKIIYAVFKVKNANNILDGLSEMYR 252

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           +      G  + ++  G+++     +  +P  V + VI  +  +IP   PI       ++
Sbjct: 253 IFGQFINGKILDSLIIGMIMFIVSTILNLPYAVLISVIVGVTNVIPFFGPIIGAIPCFFI 312

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           ++  +   +  L L   I        L P ++G    L        ++ 
Sbjct: 313 VLIADPIKSLVLLLVILILQQFDGNILGPKIIGDTTGLSSFWVLTAVIV 361


>gi|323351829|ref|ZP_08087480.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|322121886|gb|EFX93618.1| membrane protein [Streptococcus sanguinis VMC66]
 gi|324993171|gb|EGC25091.1| permease [Streptococcus sanguinis SK405]
 gi|324995526|gb|EGC27438.1| permease [Streptococcus sanguinis SK678]
 gi|325696807|gb|EGD38695.1| permease [Streptococcus sanguinis SK160]
 gi|327461441|gb|EGF07772.1| permease [Streptococcus sanguinis SK1]
 gi|327473746|gb|EGF19164.1| permease [Streptococcus sanguinis SK408]
          Length = 392

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 113/346 (32%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      I  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITIVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +              ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADKFIDDVVTKYISADFKPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  +N       +A           ++II M   LF+  RDG ++   +       
Sbjct: 161 DW----ASNFSSRAVNWAGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRESFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   +E  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|261206759|ref|ZP_05921450.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289566440|ref|ZP_06446866.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
 gi|260078889|gb|EEW66589.1| conserved hypothetical protein [Enterococcus faecium TC 6]
 gi|289161761|gb|EFD09635.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
          Length = 393

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 40  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 98  LGSVWLVPFLEEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 157

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  RD     Q + ++    
Sbjct: 158 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRDPQKFYQSVLAIVPPA 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 214 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 274 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 334 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 370


>gi|52081609|ref|YP_080400.1| hypothetical protein BL02577 [Bacillus licheniformis ATCC 14580]
 gi|52786989|ref|YP_092818.1| YubA [Bacillus licheniformis ATCC 14580]
 gi|52004820|gb|AAU24762.1| hypothetical protein BL02577 [Bacillus licheniformis ATCC 14580]
 gi|52349491|gb|AAU42125.1| YubA [Bacillus licheniformis ATCC 14580]
          Length = 381

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  ++    PV+   ++ +   PI       K     +  ++  + ++ L  + 
Sbjct: 42  FIFTPFIVLVETIALPVVLTGVVYYLLNPIVDFLE-WKNVKRIYSILLLYIVIIGLITIS 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +      ++  LV              + L          +    +L+   S     
Sbjct: 101 IVSVIPLLREQITSLVDNFPRYVHIVEDQIKQLIGSQFFNQVQQTMNINLTDLASKLSDQ 160

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T +  +    +  F      + +        +   LF+  +DG  +   +  L      
Sbjct: 161 ATTILNSTFTGVGTFIGAVTEVVISIVT----VPFILFYLLKDGKKLPLFILKLIPVRLR 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L ++ A  +++P  
Sbjct: 217 EQTYVMMSEMNHRLSSYIRGQIIVSFCIGCLLFIGYMIIGLDYASLLALVAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  + F    L +   +      K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPFMLVKLIIVWTVVQLFEGKFISPQIMGKNLHIHPVTIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +  G++G+ +     A+I V+        K+ 
Sbjct: 337 TAAKLFGVIGVILAIPGYAVIKVVVTHLFEWFKQR 371


>gi|186476728|ref|YP_001858198.1| hypothetical protein Bphy_1973 [Burkholderia phymatum STM815]
 gi|184193187|gb|ACC71152.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 382

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 70/331 (21%), Positives = 142/331 (42%), Gaps = 5/331 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F   +L   I+ F+SW +Y    +       + A +  + ++ + + P ++  +    
Sbjct: 37  APFTTALLWGAILSFSSWGLYCKLATSLGGRRRWAATLIVLIILIVVLGPFVYAGFALGA 96

Query: 88  EMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +++ + V          +P W++ IP    + E + + ++   S  +     L     
Sbjct: 97  HTRDITALVQHLMDAGLPDLPDWVARIPLVGSSIESFWERVTSSNSEMVAQLRGLAAPAG 156

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            +I   A             +   II  FFFY  G   +  L++    +       +  +
Sbjct: 157 KWILAAALAVT----HGLGLLALSIILTFFFYTGGEGAAAWLNAGMRRIAGERADYLLAL 212

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               ++    G+   A+ +G++ G   W+AGVP+   LG+ T  +++IPGG  + +   +
Sbjct: 213 AGSTVKGVVYGILGTALVQGVLAGFGCWIAGVPAPALLGLATFFLSVIPGGPVVVWLPAA 272

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I+L   G    A  L +WG + + + D  ++P L+G    +P +    G++GG    G L
Sbjct: 273 IWLYHGGETGWAIFLVVWGVVVVGMSDNVVKPILIGKSSDMPLILVMLGILGGAFAFGFL 332

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G+FIGP L+A+   +  +  +   E +E I+
Sbjct: 333 GVFIGPTLLAVAYTVLHDWTIGSPEARELIA 363


>gi|315281596|ref|ZP_07870191.1| permease [Listeria marthii FSL S4-120]
 gi|313614759|gb|EFR88308.1| permease [Listeria marthii FSL S4-120]
          Length = 378

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 120/345 (34%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPVGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      +  S+ P   
Sbjct: 72  PRLLSVILIFIAFIVLVVLAVMQLGPTLADQVTELAKAIPGYWQDFEKWLQSFSNNPAFQ 131

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    +    S   +S   L +  +D +             + + ++ +   +F+ 
Sbjct: 132 GVD------IKEELSKLNISLPKLMSVVVDGVASSFGAIISFVSGFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|310829537|ref|YP_003961894.1| hypothetical protein ELI_3987 [Eubacterium limosum KIST612]
 gi|308741271|gb|ADO38931.1| putative membrane protein [Eubacterium limosum KIST612]
          Length = 392

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 104/351 (29%), Gaps = 17/351 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--------------KKEESSTFLAVIATV 68
            L  L     P+L  + I F      S F                +++       V+  +
Sbjct: 34  GLGILVDIAMPLLIGIAIAFVLNIPMSFFERYVFKFMDRIRGRRLREKGKRAAAIVLTFI 93

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L    + F+       ++ L++K             W++ +   +   E     LS
Sbjct: 94  FIGLLITGVVTFVIPQLQKSVEMLITKFPGYVAS---FNLWVNQVLEWLHLPEDAWNQLS 150

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     +      +  I            ++ +  I  +  L    R      + +
Sbjct: 151 SQWQDLFPKISSGLIGAMPEIVNTTVSITQGVFNFLMGFIISVYMLADKERLLALKDKLM 210

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +       A+  ++     +       G    A   G +  +   +  VP  + +GV+ 
Sbjct: 211 YAYIPDKARAFINEVGHTANQTFHGFIAGQITEAFILGTLCAAGLAILRVPYALLIGVLV 270

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + ++IP          S  +L+           ++      +    + P +VG  + + 
Sbjct: 271 GVTSIIPIFGAFLGAVPSGLILLVVKPVYCLIFIIYIICLQQVESNVIYPKVVGTSVGIS 330

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L    G++ G    G  G+ +G    A++  + +    A    K+    N
Sbjct: 331 GLWVLIGMLLGGSFFGFTGMILGIPGFAVLYSVVRTLTNARIARKQAAKQN 381


>gi|308174441|ref|YP_003921146.1| permease [Bacillus amyloliquefaciens DSM 7]
 gi|307607305|emb|CBI43676.1| putative permease [Bacillus amyloliquefaciens DSM 7]
          Length = 353

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 110/330 (33%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K  F P+  A+ I +   PI      K     T   ++            +    
Sbjct: 35  IWLVMKSLFIPIFIAVFIAYLLLPITDWLHGK-GMPRTLSLLLIYFLFFGGIGWGVYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++++L   +    ++   + R L +           T H       ++       
Sbjct: 94  PVLIEQLQDLSESIPGLAENYNSMLRHLHN----------HTDHWPDGMHHRMDKMIQQT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +        R     LDY L    +   +F+  +D   + + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVLDYILIAATIPFLVFYMVKDIDVMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    G + G ++WL G+P  + LG+   I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGFIAGVSFWLFGLPYPLILGLAIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPALLLSLAISSKAVIIVIVTIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G+ G+ +     A++ V     +    E+
Sbjct: 324 AGIPGMILAVPAAAVLKVTAIHFLRIRTEH 353


>gi|212710881|ref|ZP_03319009.1| hypothetical protein PROVALCAL_01949 [Providencia alcalifaciens DSM
           30120]
 gi|212686578|gb|EEB46106.1| hypothetical protein PROVALCAL_01949 [Providencia alcalifaciens DSM
           30120]
          Length = 361

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 111/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +  + ++ I  + ++F     AP+L A+++ +           +   S   
Sbjct: 10  RRRFADPQAVALFSLLVIGFLVIFFFSSILAPLLVAIVLAYLLEWPTHLLQ-RLGLSRVL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I       +  + +L +      +   LV+ +           R L +    +    
Sbjct: 69  AVSIILTLFAGISAMVILIIAPTAWQQGINLVADLPNMVNRFSEFARRLPEQYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   D + + +    +      + ++ + + +FF  +D 
Sbjct: 125 ----VDAGIIDMMADNVRSRLSVVADSVVKASVASLIGIFTLAVYLVLVPLMMFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I++    L          K+   + + I +   G     +  G+     +    +   
Sbjct: 181 EKITKSFLKLLP-KNRLLVSKVWLEMNQQITNYLRGKVTEMVIVGVFTYIGFAYFDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+  +  +IP    +  T   +   L   G       LF+   +   +    + P 
Sbjct: 240 VLLSVLVGVSVLIPYIGAVVATIPVVLVALFQWGIGTEFWSLFIVYLVIQGLDSNIVVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +       + + +
Sbjct: 300 LYSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVINAWPQDLNDAE 353


>gi|146319150|ref|YP_001198862.1| permease [Streptococcus suis 05ZYH33]
 gi|145689956|gb|ABP90462.1| Predicted permease [Streptococcus suis 05ZYH33]
          Length = 391

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 113/337 (33%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      FL+    P++   ++ +   P+        + S T    I  V +  L I
Sbjct: 45  ISFLFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKH-KISRTVGISILFVLISLLII 103

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      +    Q        L              + L+      +
Sbjct: 104 WGLAVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIV 163

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  ++ +++     S    I +        M   LF+  RDG  +++ +       
Sbjct: 164 AYAQKFSSSAVNWASNLISTASQIIVAIL----IMPFILFYLLRDGQYLNKHITQYLPTK 219

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP
Sbjct: 220 WREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP 279

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 280 YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFV 339

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+   +  G+LG+ +G  + A I V+ K +    K +
Sbjct: 340 LLTAGQMYGVLGVLLGIPIYASIKVLVKAAFEWYKAH 376


>gi|294631801|ref|ZP_06710361.1| membrane protein [Streptomyces sp. e14]
 gi|292835134|gb|EFF93483.1| membrane protein [Streptomyces sp. e14]
          Length = 386

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 104/357 (29%), Gaps = 18/357 (5%)

Query: 4   TMLNPQGIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
               P+ ++  + +         + + +      +L A  +     P  S   S+     
Sbjct: 2   PRWLPRAMVLALALIAAFQFGSWAFHQVTSLLINILIAFFLALAIEPAVSRMASR-GMRR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F   +  + +       +  L      ++ +++          I             W 
Sbjct: 61  GFATFLVFLGLAIATAGFVTLLGSMLAGQIIKMIEGFPEYLDSVIN------------WV 108

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +  +  HL      + L  +                     L     ++ + +  F+F  
Sbjct: 109 NATFHSHLRRVDIQEGLLHSDWLRKYAQNSAAGVLDVSAQVLGGLFRLLTVALFSFYFAA 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + + L S+      A   +   I             ++A+  G+         GVP
Sbjct: 169 DGPRLRRALCSVLPPARQAEVLRAWEIAVDKTGGYLYSRGLMALVSGVAHYVLLQALGVP 228

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               LGV   +++  IP        A+ + +    N + A  + ++  +     +  L+P
Sbjct: 229 YAPVLGVWVGLVSQFIPTIGTYLAGALPMLIAFTVNPWYALWVLVFVVVYQQFENYMLQP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L    + +     F  ++ G   +G +G  I    +A +       +       + 
Sbjct: 289 KLTSKTVDIHPAVAFGSVIAGTALLGAVGALIAIPAVATLQAFLGAYVKRYDVTDDP 345


>gi|269102539|ref|ZP_06155236.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268162437|gb|EEZ40933.1| putative membrane protein [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 371

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 130/354 (36%), Gaps = 5/354 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +++ +I+ +   +K F  PVL   II     P+     +  +      A +
Sbjct: 13  MVESAIRIGLLLVLIIWTYDIVKPFIIPVLWGAIIAVALMPLTDKLQAVFKGRRGLAATV 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L I P + +       +   +S +   +       + ++DIP           
Sbjct: 73  IALVCIALLIAPFVMVSGSIYDGITHTMSVLQSGDIKIPGPTQRIADIPVVGDKIYEVWS 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      + +        +  +           + + +++         F      I+
Sbjct: 133 LFATNMEKAVTNFLPEIKTAVGTLASILGSSLASLVVFIIALAVAGG----FMTHSHKIT 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +  +          K + +    IRS  LG+  +A  + +++GSA +   VP    L 
Sbjct: 189 EAIQKVSIRTVGKNGAKWTTLTAATIRSVLLGVVGVAFIQAMIIGSAMFAFHVPMAGLLT 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   I+ +    A I    V  Y+   G+  + T   +W      + D  L+P L+G  +
Sbjct: 249 LGVLILCIAQLPALIVIAPVIFYVYSTGDGTSTTIFTIWALAG-GLADNILKPMLMGRGV 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +P      G +GG+   G++GLF+G V++A+   ++   + A  E  + +   
Sbjct: 308 DVPMPVILIGAIGGMLFSGIIGLFLGAVILAIWYELFMAWLKADAETTQAVVEE 361


>gi|239626409|ref|ZP_04669440.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516555|gb|EEQ56421.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 415

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 106/353 (30%), Gaps = 17/353 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---------------STFLA 63
           ++  +L  +     P++   ++ +   PIY+   +                         
Sbjct: 35  LVSGALGKIASILMPIIYGAVLAYLMLPIYNKTRAYTTLKLSKAIKDQSIVDRLAKAAGT 94

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASE 121
           +++ V ++ +       +       +  L   +     +       +   +     +   
Sbjct: 95  LVSLVVLVAIVAGLFRMIIPEIYNSIIRLQESIGEYINNLTMWMNKMFEDNQDFEKFVMP 154

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            + + +S  Q           +  I  +         +  +  + +I M+  L       
Sbjct: 155 YYEQGVSEFQKWLTEKLVPNMSMIIGQLSTGLLSVVTVVKNILIGVIVMVYFLNIKDTLA 214

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + + S+ +           R    +      G  + ++  G++   A     +P  
Sbjct: 215 AQSKKIVYSILKLKDANRLVSEVRFAHGIFGGFITGKLLDSLIIGIMCFFALQFMDMPYV 274

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + + VI  +  +IP   P      S +L++  +        ++  I        L P ++
Sbjct: 275 LLISVIIGVTNVIPFFGPFIGAVPSAFLILMISPMKCLYFLIFILILQQFDGNILGPKIL 334

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    LP     F ++     +G +G+ IG    A+I  +    +    + K 
Sbjct: 335 GDSTGLPSFWVLFSILLFGGLLGFVGMIIGVPAFAVIYRLVSAYVSNNLKKKN 387


>gi|257877479|ref|ZP_05657132.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257811645|gb|EEV40465.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 399

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 106/337 (31%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     +K +   +       + ++ L +
Sbjct: 35  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLETK-KIPRSASIAGIYLLILLLIV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L+     +  +L++ +               +           T  L +  S  +
Sbjct: 94  FAGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIM 153

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G   +    S    +F+      I       F  R+       + SL    
Sbjct: 154 SFIGDYWQTGAAGLSSLFSTISTLFIALFTGPIIAF----FLLRNPNKFYFSVLSLVPPR 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 210 FRKDFNEIVKISDLQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 269

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       +++  + +        +       +    + P ++G  +K+  +     
Sbjct: 270 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVVPRVMGDRLKIHPITILVV 329

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ V+        K+ 
Sbjct: 330 LLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQR 366


>gi|255028980|ref|ZP_05300931.1| hypothetical protein LmonL_07086 [Listeria monocytogenes LO28]
          Length = 354

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 113/317 (35%), Gaps = 7/317 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P+L A  + +   P+      + +       ++  ++ + L ++ ++ L    
Sbjct: 17  IVSTLFMPILVAGFLFYLFNPLVLFLEKR-KVPRLLSVIVIFIAFITLVVLAVMQLGPTL 75

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ EL   +    Q      + LS+       S L    +        +S   + +  
Sbjct: 76  ADQVAELAKAIPGYWQDFEKWLQGLSNN------SALKDIDMKQELEKLNISLPKIMSVV 129

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +D +             + + ++ +   +F+ ++DG    +           +  K+I +
Sbjct: 130 VDGVASSFGAIVSFVSSFVMILVTVPFIVFYMFKDGHKFVESSGKFFPAGIRSEAKQIIK 189

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K I +      I  +  GL     Y + G P  +  G I     +IP   P    A 
Sbjct: 190 EMNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYALLFGFIAGATNIIPYLGPFIGAAP 249

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ + +  +   A  + +   I   I    L P+++G  + +  L     L+      G+
Sbjct: 250 AVIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGI 309

Query: 326 LGLFIGPVLMALIAVIW 342
            G+ +G  L A++  I 
Sbjct: 310 FGMILGVPLYAVVKTII 326


>gi|295704012|ref|YP_003597087.1| putative membrane protein YueF [Bacillus megaterium DSM 319]
 gi|294801671|gb|ADF38737.1| putative membrane protein YueF [Bacillus megaterium DSM 319]
          Length = 363

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 121/342 (35%), Gaps = 5/342 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ L    F+   F P+L A  + F   PI S    K +   T   ++  V  + +  
Sbjct: 26  ISFVFLPIGVFISTLFFPILVAGFLFFLFEPIVSFLTRK-KVPKTLAILLLYVVFIGVIA 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +      ++ +L   +             LS+     W  E     L H +   +
Sbjct: 85  SIVGGVGPTLSKQLTDLAKNIPSYIVETRKYINDLSNSRWFNWLVEQKYVSLDHIEESLL 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + L TN    +    S    +  +  L+++ +   LF+  +D   + +    +    
Sbjct: 145 NYASTLPTN----LTNSISSVLSVVTNITLTVVTVPFILFYMLKDSHKLRKNTLRMVPAS 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     +  +     + +   G  ++ +  G+     Y + G+P  + L +I A+  +IP
Sbjct: 201 YRKETLRTMKETTNTLATYIQGQMLVCLFVGISTFIGYLIIGLPYALILALIGALTNIIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ + +  +   A  + +   I   +    + P ++G  +    L     
Sbjct: 261 YVGPFIGVAPALIVGLLYSPTKAILVIIVVVIVQQLDGNIISPLVIGKKLNTHPLTIIIL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+      G+LG+ +     A+   I    +  I+   + + 
Sbjct: 321 LLVAGNIAGILGMILAIPAYAVTKTIVINIVRMIQFRNKSVK 362


>gi|304383623|ref|ZP_07366082.1| membrane protein [Prevotella marshii DSM 16973]
 gi|304335147|gb|EFM01418.1| membrane protein [Prevotella marshii DSM 16973]
          Length = 365

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/357 (13%), Positives = 125/357 (35%), Gaps = 13/357 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +  +  +++  +L  + +L     P   A ++ +  +PI      K          V++ 
Sbjct: 13  RWALIALLVVTVLYIVSYLSNVLLPFFVAWLLAYLLYPIVRFVQYKLHVRVRALAIVLSM 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V+V+ L    L F+    + ++  L        +         + I   +  +       
Sbjct: 73  VAVLGLIGGVLYFIIPPMIEQLDRLTDVAGRYLKDTTHSNSVTAWIQQWLQDNRHEITRF 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            H +    + +T +                   +   ++    ++ +FF   D  +++  
Sbjct: 133 FHSKDFSDIVKTTMPRLFA------VLGQTASIVMSIVASFITLLYMFFILLDYETLTNN 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +       +WK++   V + + +   G +++++  G++    + L   P  + LG++
Sbjct: 187 WIKIFPQKNRPFWKELMHDVERELNNYIRGQSLVSLIMGILFCIGFTLIDFPMGIGLGIL 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ ++P    ++    +I  L       +   +      L   I   I D  + P ++
Sbjct: 247 IGLLNLVPYLHTLALVPTAILALLKAAETGENFWWVFVPALLVFLIVQLISDLVVTPRIM 306

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G  ++L        L      +G +GL I   L  LI   W+  +      ++  +S
Sbjct: 307 GKAMRLNPAILLLSLSVWGALLGFVGLIIALPLTTLIIAYWQRYVTKEYTAEQSQNS 363


>gi|217964991|ref|YP_002350669.1| membrane protein YueF [Listeria monocytogenes HCC23]
 gi|290892901|ref|ZP_06555891.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|217334261|gb|ACK40055.1| membrane protein YueF [Listeria monocytogenes HCC23]
 gi|290557477|gb|EFD91001.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307570449|emb|CAR83628.1| membrane protein, putative [Listeria monocytogenes L99]
          Length = 378

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDLDIKQELEKLNISLPKIMSVVVDGVASSFGAIISFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|16802949|ref|NP_464434.1| hypothetical protein lmo0908 [Listeria monocytogenes EGD-e]
 gi|224499448|ref|ZP_03667797.1| hypothetical protein LmonF1_06997 [Listeria monocytogenes Finland
           1988]
 gi|224503122|ref|ZP_03671429.1| hypothetical protein LmonFR_11478 [Listeria monocytogenes FSL
           R2-561]
 gi|16410311|emb|CAC98986.1| lmo0908 [Listeria monocytogenes EGD-e]
          Length = 378

 Score =  132 bits (332), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|157693603|ref|YP_001488065.1| hypothetical protein BPUM_2850 [Bacillus pumilus SAFR-032]
 gi|157682361|gb|ABV63505.1| hypothetical membrane protein [Bacillus pumilus SAFR-032]
          Length = 367

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 111/326 (34%), Gaps = 6/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+    + F    F P+L A I+ F   PI      K     T   +I  +  + L  
Sbjct: 26  VSFLFQPIILFASTLFVPILLAGILFFIFNPIVRFLSKK--IPRTLAILIIYLLFIGLIT 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +       + ++  LV                 S      W        +S  +   +
Sbjct: 84  FIVNAAGPVIISQVGGLVKSFPGYVTDMQKFINDFSHSKTFTWMMSQDYVSVSKFEQTVV 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   L  N    I    S    +  +  L++I +   LF+  +DG     +L       
Sbjct: 144 STLKALPEN----IASSMSAVFGVIANIALAVITVPFILFYMLKDGHKFPDKLVQFLPMP 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     KI + +   + +   G  I+ +  G+     Y L GV   + LG+I A+  +IP
Sbjct: 200 YRKEGLKIFKELNDTLAAYIQGQIIVCLFVGVACFIGYLLIGVKYALILGIIIAVTNVIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +    +   A    +   +   I    + P ++G  +    L     
Sbjct: 260 YLGPYLGAAPAVLIAFLDSPGKAVVTVIVILVVQQIDGNVISPLIIGKRLNTHPLTIILL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+G     G+LG+     + AL+  I
Sbjct: 320 LIGAGSFGGILGMIFAVPVYALLKAI 345


>gi|84389749|ref|ZP_00991301.1| permease PerM [Vibrio splendidus 12B01]
 gi|84376850|gb|EAP93724.1| permease PerM [Vibrio splendidus 12B01]
          Length = 358

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 112/356 (31%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +      +    +     T 
Sbjct: 10  KRRFSDPHAVSLVAIILFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLQ-RLGIPRTP 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    L ++ L  L      ++  L++ +             + +    +   +
Sbjct: 69  SVMLVIMMFFSLMLLALFGLVPTIWEQVGNLINDIPSMYGGLQKFIATIPERYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVESIVSNAKNKALGFGESVVKGSLASLVSLAT--------LAVYLILVPLLIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMISMASGVLP-KNRRLATKVWVEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V      +IP     + T       L   G       L L   I   +    L P 
Sbjct: 240 ALLAVAVGFSVLIPYIGAAAVTVPVAIVGLFQWGLEPQFYWLLLAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  +     ++      G  G+F    L  L+  +W        ++  +
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHALDDDPE 355


>gi|90423372|ref|YP_531742.1| hypothetical protein RPC_1866 [Rhodopseudomonas palustris BisB18]
 gi|90105386|gb|ABD87423.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 689

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/359 (11%), Positives = 98/359 (27%), Gaps = 29/359 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   ++  II+++LY  +  F PV  A+++ F   P  +            +  +  ++
Sbjct: 53  AVALAILAVIIVMALYLGREIFVPVALAILLSFVLAPPVAWLQRAHVPRGGAVVGVVLLA 112

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +F      +      ++  L  ++           + L     G    E     L  
Sbjct: 113 FAIIFG-----IGSLVATQLAHLAEELPRYETTIQSKIQSLRGATVGGGTLERAADMLQD 167

Query: 130 PQSLKILSETFLKTNGIDF----------------------IPRFASRFGMIFLDYCLSI 167
                                                                +    + 
Sbjct: 168 LSKELDRPNGTRAAPSPRLGGDTQRPAVAPVPVEVRQPDPGALESIRSLIAPLVSPLATT 227

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             ++I + F       +  +L  L                   +   FL   ++  G G+
Sbjct: 228 GIIVIFVIFILIQREDLRNRLIRLAGSHDLQRTTAALDDAAARLSRLFLNQLLVNAGFGV 287

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWG 285
           ++G+  WL G+PS +  G++  ++  +P    +   A  + L                  
Sbjct: 288 LIGTGLWLIGIPSAILWGILAMVLRFVPYIGSVIAAAFPLALAAAVDPGWSMLAWTAALF 347

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    + + + P L G    L  +             G +GL +   L   + V+ + 
Sbjct: 348 FVIEPAIAQVVEPLLYGRSTGLSAVAVVVAATFWTALWGPIGLVLATPLTVCLVVLGRH 406


>gi|229103517|ref|ZP_04234199.1| hypothetical protein bcere0019_26670 [Bacillus cereus Rock3-28]
 gi|229116426|ref|ZP_04245816.1| hypothetical protein bcere0017_27140 [Bacillus cereus Rock1-3]
 gi|228667258|gb|EEL22710.1| hypothetical protein bcere0017_27140 [Bacillus cereus Rock1-3]
 gi|228680013|gb|EEL34208.1| hypothetical protein bcere0019_26670 [Bacillus cereus Rock3-28]
          Length = 302

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 104/303 (34%), Gaps = 4/303 (1%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           K+       ++  + ++ L  V +  +      ++ +LV  +    + G    + LS   
Sbjct: 4   KKVPRNLAILLLYLFIITLTAVGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHR 63

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              W S                +      +  + I   A+    I  +  L I  +   L
Sbjct: 64  LFEWLSTQNY----VSIETIEKNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFIL 119

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+ ++DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y 
Sbjct: 120 FYMFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYL 179

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P    LG+I A   +IP   P    A ++ + +  +   A  + +   I       
Sbjct: 180 IIDLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESN 239

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            + P ++   + +  L     ++G     G++G+ +   + A+   +    +   K  + 
Sbjct: 240 IISPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKRN 299

Query: 355 KIS 357
              
Sbjct: 300 NRK 302


>gi|121535964|ref|ZP_01667758.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
 gi|121305456|gb|EAX46404.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
          Length = 341

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 107/327 (32%), Gaps = 9/327 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              L+ ++    P + A ++ +   P      +       +   +    +  + I+    
Sbjct: 21  GYFLWRVRSGLYPFILAFLLAYLLNPAVCYLENH-GLRRIWAIAVVYAVLFSIIILGGSR 79

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + E++               + + L              + L     L       
Sbjct: 80  LVPLLIREIEAFGRDFPAIVARVEDLAQALQWQYQNSVLPYSLRQALDKTLLLLQGEVQA 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             +  +  I             + + +    I  F+   D   I ++L  L    +    
Sbjct: 140 FVSGLVGGIITLL--------SHFIGLAITPILAFYMLHDWHEIKERLLFLLPPYWRHEA 191

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I R V KV+     G   +AI  GL++    +L  V   + +G+I  ++ +IP     
Sbjct: 192 VMIFRDVDKVLAGVIRGQITVAIIVGLLVSLGLYLLNVRYALMIGIIAGLLDVIPYFGAF 251

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              + ++ L +  + + A  + +   +   +    + P ++G  + L  L   F L  G 
Sbjct: 252 IGASPAVTLALLESPWLALKVGILFLVIHQLEGTVIGPKVLGENVGLHPLSVIFALFVGG 311

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIM 347
              GL G+ +G  + AL  V  +  + 
Sbjct: 312 ELAGLAGMLLGVPVAALAKVFGRHLVR 338


>gi|194015510|ref|ZP_03054126.1| membrane protein YueF [Bacillus pumilus ATCC 7061]
 gi|194012914|gb|EDW22480.1| membrane protein YueF [Bacillus pumilus ATCC 7061]
          Length = 367

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/326 (18%), Positives = 111/326 (34%), Gaps = 6/326 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F+    + F    F P+L A I+ F   PI      K     +   +I  +  + L  
Sbjct: 26  VSFLFQPIILFASTLFVPILLAGILFFIFNPIVRFLSKK--IPRSLAILIIYLLFIGLIT 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +       + ++  LV                 S      W        +S  +   +
Sbjct: 84  FIVNAAGPVIVTQLGGLVKSFPGYVTDMQKFINDFSHSKTFTWMMSQDYVSVSKFEQTVV 143

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   L  N    I    S    +  +  L++I +   LF+  +DG     +L       
Sbjct: 144 STLKALPEN----IASSMSAVFGVIANIALAVITVPFILFYMLKDGHKFPDKLVQFLPMP 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     KI + +   + +   G  I+ +  G+     Y L GV   + LG+I A+  +IP
Sbjct: 200 YRKEGLKIFKELNDTLAAYIQGQIIVCLFVGVACFIGYLLIGVKYALILGIIIAVTNVIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A ++ +    +   A    +   +   I    + P ++G  +    L     
Sbjct: 260 YLGPYLGAAPAVLIAFLDSPGKAVVTVIVILVVQQIDGNVISPLIIGKRLNTHPLTIILL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+G     G+LG+     + AL+  I
Sbjct: 320 LIGAGSFGGILGMIFAVPVYALLKAI 345


>gi|325283454|ref|YP_004255995.1| hypothetical protein Deipr_1228 [Deinococcus proteolyticus MRP]
 gi|324315263|gb|ADY26378.1| protein of unknown function UPF0118 [Deinococcus proteolyticus MRP]
          Length = 469

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 114/353 (32%), Gaps = 16/353 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +   + +  ++++LYF          V  A+++     P+   F         F A+ 
Sbjct: 10  NLLPSALAVLGVILALYFFSQVSASLMAVTLAVLLASALNPVVLFFERWM--PRGFAALF 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + + ++  FI          + ++  +   +             L+             +
Sbjct: 68  SVLLLLGGFIGLGALAMPPIVEQLGSV--NLPGTVGEAQAQLEKLAQRYP---------Q 116

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q  ++       T  +         + +  +    + +  ++ +         + 
Sbjct: 117 LSPLVQPERVEQFQAQLTEWLSASAGSLLDWAVKAVGLVFTGLITLVMVILALSSPAPLI 176

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +             +    +   + +       I +  G ++ +  +  GV + +  G
Sbjct: 177 GGVLGAFPPQHRTKAARALAQILVQMGAWGRATLTIMLATGAIMAAGLYFLGVKNWLVFG 236

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V++A+  +IP   PI  + + +      +   A  + ++  +   +    L PFL+GG  
Sbjct: 237 VLSALGELIPNIGPIVSSGLPVLFTAAEDPQKALYVAIFALVFQQLEGAVLAPFLLGGAG 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++  L    G++      G++G F+    + +I  +++   +A     E    
Sbjct: 297 RMHPLSVTVGVLLFGSVFGIVGAFLTVPFLIVIKAVYEHFYLAGNPRPELTDE 349


>gi|84494511|ref|ZP_00993630.1| membrane protein [Janibacter sp. HTCC2649]
 gi|84384004|gb|EAP99884.1| membrane protein [Janibacter sp. HTCC2649]
          Length = 433

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 99/322 (30%), Gaps = 18/322 (5%)

Query: 1   MRETMLNPQ-------GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS 53
           M   M           G +  +I   +  SL  L      ++ AL +     P+      
Sbjct: 85  MGRPMNRRSPFYLGFVGALGALIAIGLWHSLGRLATTITILVVALFLTLALNPMVEWLER 144

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +     +    I  + V+ +F    L +F   + +  EL+ +              L  I
Sbjct: 145 R-GLKRSLSVGIVFIGVLVVFTFLGLLVFPPVVTQGGELIQQAPSY----------LDRI 193

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               WA EL   +    +  +  ++       I  I       G   L+       ++I 
Sbjct: 194 LNAKWAQELDKNYDIVEKVREEFNKRITDETFISSILGGVLGAGRAVLNGVFQTFTILIL 253

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             +F      + +   S+        + ++S  + +   S  +G   IA    ++     
Sbjct: 254 TLYFLASLPKMKKTAYSMVPASRRNRFAQLSEEIMRRTGSYAIGQVAIASINAILSYVMM 313

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L G+P    L V+   + +IP         +   +        A    ++  I   + +
Sbjct: 314 LLLGIPYAAVLAVLVGFLGLIPMVGATLGAGLVCLVAFFDEPRIALFAAIYYLIYQQVEN 373

Query: 294 KTLRPFLVGGPIKLPFLPTFFG 315
             + P ++   + +P   T   
Sbjct: 374 YVIAPKIMQRTVSVPGALTVVA 395


>gi|325833632|ref|ZP_08166081.1| putative membrane protein [Eggerthella sp. HGA1]
 gi|325485556|gb|EGC88025.1| putative membrane protein [Eggerthella sp. HGA1]
          Length = 429

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 114/359 (31%), Gaps = 16/359 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++    +   ++  +++     L      V+ +++I F      +    K       
Sbjct: 16  RSFLIVWTIVGGILLTGVLVYLFNILSVPIGIVIWSIVIVFCLRGPVNKLE-KLGVPRVA 74

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGM---LEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              IA V +  +  +  L +F        +   L+  +    Q        L      + 
Sbjct: 75  GTTIAYVLMFVVLALVGLLMFSPAFGVGDQFTNLIESIPGYVQTIAGWGNDLYTRYADVL 134

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            ++     +++     +   +    +            G   ++  +++ F ++  F+  
Sbjct: 135 QNDTVQTWINNALDAIVSWASTFARDS----ANGVVAIGTGLVNTFVALGFALVVAFWIL 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +   + ++   L         + +     +V+     G  +     G+     +   G+
Sbjct: 191 MELPQLGRECMRLVNPKRHEDLEMLHVTFTRVMGGYIKGTLLQCAIIGVGCVVLFGAIGI 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P++ ALG I  ++ +IP   P    A++  + +  + + A            IV   + P
Sbjct: 251 PNYAALGGIAGLLNIIPIVGPWLGGALAAIVGVFVSPWIAVIALGGTIAIQQIVYTFISP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMG--------LLGLFIGPVLMALIAVIWKESIMAI 349
            ++   + +    T   L+ G    G        L+G+      +A+   ++       
Sbjct: 311 KIMANSVDVHPALTLIALMAGSAIGGAMSGFTGSLVGMLASIPAVAVAKSVFVYYFEKR 369


>gi|258592868|emb|CBE69177.1| conserved membrane protein of unknown function [NC10 bacterium
           'Dutch sediment']
          Length = 378

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 133/322 (41%), Gaps = 3/322 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F +P+  A+I+     P+Y   + +    S   A++ T++V+   ++P +   +  
Sbjct: 39  IIVPFASPIFWAVILVVVFQPVYRRLLHRLGGKSGLAALLLTIAVIAAVMIPAILSGWVL 98

Query: 86  MLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             E             Q G+        +  G    +  +   +                
Sbjct: 99  TQEAVSFYQAAERVYQQEGLAGIASHPAVMAGRVLWDRVSLPFTRLGFDLNALLLGGLGA 158

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              FI        +  L + +++   +   FF  RDG +I   L  +   L   + + + 
Sbjct: 159 VSSFIVDNLKGIAINLLSFTVNLFLAVFTFFFLLRDGEAIVYSLQRILP-LERKHAEALF 217

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFT 263
             + + + +   G  + A+ +G++ G  YW  GVP  V LG+ TA+ +++P G   + + 
Sbjct: 218 SRLYEAVSAVVRGTIVTALAQGILGGVGYWAVGVPYPVFLGLATALFSLLPVGGSAVIWI 277

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + YL ++G       L  W  + +   D  L+P L+ G   LP L  FFG++GG++  
Sbjct: 278 PAAFYLFLEGGWIRGLLLLAWSTVVVSTADNVLKPALISGGTNLPTLFLFFGMLGGLQVF 337

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           G+LG  +GPVL+  ++   +  
Sbjct: 338 GILGFILGPVLLVTLSTFLEIY 359


>gi|294789657|ref|ZP_06754891.1| acetyltransferase, GNAT family [Simonsiella muelleri ATCC 29453]
 gi|294482458|gb|EFG30151.1| acetyltransferase, GNAT family [Simonsiella muelleri ATCC 29453]
          Length = 361

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 116/319 (36%), Gaps = 4/319 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P + A ++ +   P+      ++    T  ++   V  + + +  LL +    + 
Sbjct: 30  RDILMPFIVAAVLAYILNPLVVMLQKRRV-KRTRASLWVMVFTLLVLVGLLLVIVPMLVK 88

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +++ ++ K+ L             +   G +A  L  + ++          T    N + 
Sbjct: 89  QIQSVIGKLPLLIDFLQYKVLPWYNGKFGEYAR-LNEQTITEWLQSNATGITSGVQNALK 147

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                  + G     +   ++ + + L++F  D       L       +   + +I+R +
Sbjct: 148 KTMPMLLQQGTSIAGWLSDVMLLPLLLYYFLLDWSRWGNGLQRFVPRRYVPTYTRITRKL 207

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             V+     G  ++ I  GLV G    L G+ S  A+G++  ++  IP     +   ++ 
Sbjct: 208 NDVLSEFLRGQLMVMIIMGLVYGLGLMLTGLESGFAIGMVAGLLVFIPYLGAFTGLLLAT 267

Query: 268 YLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
                  G+      +++   I   +    + P +VG  I L      F L+     MG 
Sbjct: 268 LAAVLQFGSWHGVIWVWVVFGIGQTLESFFITPQIVGDKIGLSPFWVIFALMAFGSLMGF 327

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   L A+  V+ +E
Sbjct: 328 AGMLVALPLAAICLVLLEE 346


>gi|330953482|gb|EGH53742.1| permease [Pseudomonas syringae Cit 7]
          Length = 358

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 120/353 (33%), Gaps = 9/353 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDTRRWFWIGGLALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +  LL L      ++  L                       G+       
Sbjct: 60  VVFGLFTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L          K++    +V+     G  ++ +G G++  +   L G+   + +
Sbjct: 176 TGKIRGLLPRQREGQIVKLAGECHEVLGGFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           GVI  + A++P    +          ++            + ++  I   +    L P L
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFFMIGQALEGMVLTPLL 295

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 VGDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 348


>gi|146321353|ref|YP_001201064.1| permease [Streptococcus suis 98HAH33]
 gi|145692159|gb|ABP92664.1| Predicted permease [Streptococcus suis 98HAH33]
          Length = 391

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 114/337 (33%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      FL+    P++   ++ +   P+        + S T    I  V +  L I
Sbjct: 45  ISFLFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKH-KISRTVGISILFVLISLLII 103

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      +    Q        L              + L+      +
Sbjct: 104 WGLAVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIV 163

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  ++ +++     S    I +        M   LF+  RDG  +++ +       
Sbjct: 164 AYAQKFSSSAVNWASNLISTASQIIVAIL----IMPFILFYLLRDGQYLNKHITQYLPTK 219

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP
Sbjct: 220 WREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP 279

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 280 YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFV 339

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+   +  G+LG+F+G  + A I V+ K +    K +
Sbjct: 340 LLTAGQMYGVLGVFLGIPIYASIKVLVKAAFEWYKAH 376


>gi|330944584|gb|EGH46538.1| hypothetical protein PSYPI_31203 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 354

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 140/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTMLYKNVETGQLDIAGYLAEFKDLLPHSAQALLDRLGMGDLEGLRDKIAKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|126643157|ref|YP_001086141.1| hypothetical protein A1S_3142 [Acinetobacter baumannii ATCC 17978]
          Length = 329

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 148/318 (46%), Gaps = 6/318 (1%)

Query: 43  TSWPIYSSFISKKEESST-FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
            +WPIY        E+     A +    V+ +  VP     +    E + L   +     
Sbjct: 1   MTWPIYLRIQHFFGENRNNLNATVMISLVILIVGVPFTCAIFILQHEGRNLYFDLQRQVF 60

Query: 102 HG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
            G + VP ++ ++P            ++   +  I +      +       +        
Sbjct: 61  SGHLSVPDFIRNLPFIGKEISRTLNEINTDPNSTIQNIAAWLQSH----LSYGRVLLNEI 116

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
               + + F I++LFFFYRDG +I  Q+    E +           + +  R+   G+ +
Sbjct: 117 SKNIVKLCFAILSLFFFYRDGHTILTQVSKALEMVIGPRIHHYLDTISETTRAVVYGVGL 176

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            AI + ++ G +Y++AGVP+ + L + T ++A+IP G P+S+  V ++L  +G    A  
Sbjct: 177 TAIAQAVLAGLSYFVAGVPNPMVLTIATFLLALIPFGTPVSYLGVGLWLFSQGQTMEAIG 236

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + LWG + +   D  +RP ++ G  ++PFL   FG++GG+ + GL+GLFIGPV++A++  
Sbjct: 237 VILWGVLIVSSSDNVIRPLVISGATQIPFLLIMFGVLGGIASFGLVGLFIGPVILAVLLA 296

Query: 341 IWKESIMAIKENKEKISS 358
           IW+E +    + +    +
Sbjct: 297 IWREWLHETIDPEPMPKT 314


>gi|296116563|ref|ZP_06835173.1| hypothetical protein GXY_12188 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976775|gb|EFG83543.1| hypothetical protein GXY_12188 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 379

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 5/348 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SS 59
           RET    +     + +F ++++LY ++GF   ++   I    SWP+Y    ++       
Sbjct: 32  RETQRAQRVARGLLALFFVVMALYTVRGFLPSLIWGGIFAIASWPLYVRARTRWHAATHQ 91

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
             L    T+ +  +F+VP+         + + ++  +  A Q G+PVP+W+  +P G   
Sbjct: 92  LLLPAAFTLGIALIFLVPVTLFGLEAARDAEGVLHLLNNARQSGMPVPQWIDHLPIGAQG 151

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W +               L +  I    +   + G       +  IF I+ LFF  +
Sbjct: 152 LRAWWE---SHLQDPDDFSALLGSLRIGQSVKMTQQVGTQLAHRGILFIFSILTLFFLLK 208

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG ++ +Q   +    F    ++I+  +   I  T  G+ ++ +GEG+V+G AY +AG P
Sbjct: 209 DGDAVIRQCLVVSRRAFGKRGERIALQIIASIHGTVAGLVLVGMGEGVVMGLAYLIAGAP 268

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                GV+TA+ AMIP  A I+   VS  LLIKG+   A  + L G   +F+ D  +RP 
Sbjct: 269 HAFLFGVVTAVAAMIPFCAMIAIGIVSTLLLIKGSAVIAIVIMLVGLAVIFLADHLVRPA 328

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L+GG  +LPFL    G++GG  +  LLGLF+GP +MA++ ++W+    
Sbjct: 329 LIGGSTQLPFLWVLTGILGGAESWNLLGLFVGPAIMAVLHMLWRNWTR 376


>gi|307725716|ref|YP_003908929.1| hypothetical protein BC1003_3698 [Burkholderia sp. CCGE1003]
 gi|307586241|gb|ADN59638.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 690

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/355 (10%), Positives = 102/355 (28%), Gaps = 25/355 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +   ++  LYF +    P+  A+++ F   P+       K        V +  +
Sbjct: 27  ALIALAVGAGLVACLYFARAVLIPMTLAILLSFLVAPLVKWLGRLKLGH-----VASVFA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  +  L     +++ EL + +                +  G           + 
Sbjct: 82  AVVISVSVIGVLGAVIAMQLTELAAGMPRYQATIERKMEAAHTLTVGKLDRFAKAAGQAL 141

Query: 130 PQSLKILSETFLKTNGID------------------FIPRFASRFGMIFLDYCLSIIFMI 171
            ++    S+   + +                          A R     +    +   + 
Sbjct: 142 QRATVEPSQPAPRRDASSADGRAPAAVPVEVREPVPTPLEVARRVLSPAISPLETAFIVF 201

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           + +         +  +   L           +     + +   F+    +    G+ +G+
Sbjct: 202 VVMVVILLQRDDLRDRAIRLFGSRDLHRTTMVMDEAARRLSRYFVSQLGLNAALGVAIGA 261

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIEL 289
             +  GVPS +  G++ A++ ++P         ++  L          A           
Sbjct: 262 GLFFIGVPSPILWGILAALLRLVPYVGIWIAGGLATALAAAVSPGWDMAVWCIALFVTVE 321

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +V + + P L G    L         +      G +GL +   L   + V+ + 
Sbjct: 322 LLVGQVVEPLLYGRSTGLSPFSVVVAAIFWSWIWGPIGLILSTPLTLCLLVLGRH 376


>gi|300772564|ref|ZP_07082434.1| permease [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760867|gb|EFK57693.1| permease [Sphingobacterium spiritivorum ATCC 33861]
          Length = 396

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 112/334 (33%), Gaps = 15/334 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
               + +I+  +Y  +    P+L ++II  T +PI +    K     +  A+++ +  + 
Sbjct: 17  SLFALVLIIALMYVTQSVLVPLLFSIIISITLFPIANFLERKLHFVRSLAAIVSVIIAIL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    + F+      E   +        +  + V         G +  +         +S
Sbjct: 77  IIGGLIWFIV----HESIIIGKDATDITKKVMSVVESFQSWVEGRFGVQ---------RS 123

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                        ++ +  + S            ++ + I +FF         +      
Sbjct: 124 EMAAQFQEQSNKMLNNVGGYLSTAFGSIGSTLAGMVLVPIFIFFLLYYRDFFKEFFFKAF 183

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +        +   + +VI+S FLG+  +     ++      + G+      G + + + 
Sbjct: 184 PNTENQKVHGVLNRIYEVIQSYFLGLVTVMGIVAVLNTVGLMIMGIEYAWFFGSLASFLM 243

Query: 253 MIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++P               L  K N + A  +  W  +  F+    + P +VGG + +  L
Sbjct: 244 LLPYIGIAIGSILPALFALATKDNAWYAIGVIAWFQVVQFLEGNIITPNIVGGKVSINPL 303

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                ++ G    GL GL +   + A + VI+  
Sbjct: 304 MAIIAILIGGMIFGLAGLILALPMTAALKVIFDA 337


>gi|325274454|ref|ZP_08140534.1| hypothetical protein G1E_14686 [Pseudomonas sp. TJI-51]
 gi|324100408|gb|EGB98174.1| hypothetical protein G1E_14686 [Pseudomonas sp. TJI-51]
          Length = 340

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 118/334 (35%), Gaps = 8/334 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LY L     P L  +++ + + P+      +   S T+  V+       LF+  LL L 
Sbjct: 2   LLYSLHNILTPFLIGILLAYLADPLVDWLERR-GLSRTWGVVVVFALFTLLFMALLLVLV 60

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  L             V         G+         +    S          
Sbjct: 61  PMLAKQLVRLYELAPQMLDWLQHVALPWVQQRLGLADGFWKFDKIKSAISE----HMGQT 116

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T+ +  +   A+   +  + +  +++ + +  F+  RD   +  +L SL           
Sbjct: 117 TDIVGVVLSQATASSLALIAWLANMVMIPVVGFYLLRDWDLMMAKLRSLLPRQQEPQIVG 176

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++    +V+ +   G  ++ +  G++      L G+   + +G++  + A++P    I  
Sbjct: 177 LAGECHEVLGAFVRGQLLVMVALGIIYSVGLMLVGLELGLLIGMLAGLAAIVPYMGFIIG 236

Query: 263 TAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              ++   +    G+++    +     I   +    L P LVG  I L  +   F ++ G
Sbjct: 237 IGAALVAGLFQFGGDLYPMLGIVAVFVIGQALEGMVLTPLLVGDRIGLHPVAVIFAILAG 296

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G  G+ +   + A+I V+ +      KE+ 
Sbjct: 297 GELFGFTGVLLALPVAAVIMVLLRHVHDLYKESD 330


>gi|254450657|ref|ZP_05064094.1| membrane protein [Octadecabacter antarcticus 238]
 gi|198265063|gb|EDY89333.1| membrane protein [Octadecabacter antarcticus 238]
          Length = 350

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 114/341 (33%), Gaps = 21/341 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     P +   +I +   PI          S     V+ T+S + +F +  L +    +
Sbjct: 1   MGAVLTPFILGSVIAYFLDPIADRLEKW-GLSRVMATVVITLSGVLIFFLLFLLVVPTLI 59

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L+S +    Q        L +   G +               ++ S      +  
Sbjct: 60  GQLGQLISTIGEIIQDLPQTWVSLKEWLSGRF---PNLDLDGTFMLDQMTSLGNAVQSRG 116

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +           ++  + ++ + +  F+   D   +  Q+D+L         + ++R 
Sbjct: 117 GDLVAALLSSAQGLINVVVLLVIVPVVTFYMLMDWDRMVAQVDNLLPRDHQETVRDLARQ 176

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + + + S   G   + +  G     A  LAG+   + +G I  +++ IP    +    ++
Sbjct: 177 IDRTLASFIRGQGTVCVILGTYYAVALMLAGLNFGLIVGFIAGLISFIPYIGALVGGVLA 236

Query: 267 IYLLIKGNIFN-----------------ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I L +                        + +    A   F     L P LVG  + L  
Sbjct: 237 IGLALFQWWGGTEVIDGETVQHSINWLRISIVAGVFAFGQFFEGNILTPKLVGNSVGLHP 296

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +     L      +G +G+ +   + A+I V+ +  I   K
Sbjct: 297 VWLILALSVFGSLLGFVGMLVAVPVAAVIGVVARFLIAEYK 337


>gi|257893855|ref|ZP_05673508.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|257830234|gb|EEV56841.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
          Length = 393

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 116/337 (34%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 40  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S  +
Sbjct: 98  LGSVWLVPFLEEQTKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFTSIDDVTSDIV 157

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+          I  FF  R+     Q + ++    
Sbjct: 158 GFIGNYWESGAQRISNIFSTVTAIFITLFTG----PIVTFFLLRNPQKFYQSVLAIVPPA 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 214 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 274 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 334 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 370


>gi|156934268|ref|YP_001438184.1| putative inner membrane protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532522|gb|ABU77348.1| hypothetical protein ESA_02098 [Cronobacter sakazakii ATCC BAA-894]
          Length = 375

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 133/349 (38%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+ M  PQ ++  + +  +I+  L+ ++ F      A  +   +WP+            
Sbjct: 7   LRQPMDVPQILLSVLFLSVMIIACLWIVQPFILGFAWAGTVVIATWPLLLRLQKMLWGRR 66

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   ++  + ++ LF++P+  L    +      +  +         +    S    G   
Sbjct: 67  SLAVLVMVLILIMLFVIPVALLVNSLVDSSGPFIHWLTSGKMTIPDLAWLNSIPYIGNKL 126

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   +    S  +            +    A+  G       +    M++     Y 
Sbjct: 127 YLGWHNLVESGGSAIMAKVRPYLGTTTGWFIGQAAHLGR----LLMHCGLMLLFSALLYW 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P
Sbjct: 183 RGEQVAYGIRHFAIRLASKRGDAAVLLAGQAIRAVALGVVVTALVQGVLGGIGLAISGIP 242

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP 
Sbjct: 243 YATLLTVVMILSCLVQLGPLPVLVPAIIWLYWSGDATWGTVLLIWSAVVGTL-DNIIRPM 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 302 LIRMGADLPMVLILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFSVWVRE 350


>gi|159043294|ref|YP_001532088.1| hypothetical protein Dshi_0742 [Dinoroseobacter shibae DFL 12]
 gi|157911054|gb|ABV92487.1| protein of unknown function UPF0118 [Dinoroseobacter shibae DFL 12]
          Length = 361

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 111/346 (32%), Gaps = 14/346 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q +   +   + L  L+ L     P +    I +   P+     +    S T    I  
Sbjct: 7   QQVLSWSIAALVFLALLWLLGDVILPFVVGGAIAYFLDPVADRLEA-MGLSRTISTAIIA 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + +FI+  L +    + +   L   +                               
Sbjct: 66  LVAVFVFIIAALLIIPTLIQQTIALGEAIPQILSQLQAFLSE----------RFPSLNDP 115

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  + +   +  +    +        +  ++  + II   +  F+   D  ++  +
Sbjct: 116 ESTIRESLATLGEMIRSRSGELVNKVFASALGVINAVIFIIVCPVVAFYLLLDWDNMVAR 175

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +D L      A  +K++  V  V+     G   + +  G     A  L G+   + +G +
Sbjct: 176 IDDLLPLDHKATIRKLAGEVDGVMAGFVRGQLTVCLILGTFYSIALMLVGLQFGLVVGAV 235

Query: 248 TAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++  IP    +    +SI L      G+      + L   +   I    L P LVG  
Sbjct: 236 AGLLTFIPYVGSLVGGTLSIGLAIFQFWGDPGWIVAVALIFILGQMIEGNYLTPKLVGDS 295

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + L  +   F L       G +G+ +   + A+I V+ + +I   +
Sbjct: 296 VGLHPVWLLFALSAFGTAFGFVGMLVAVPVSAMIGVLVRFAIGQYR 341


>gi|27375768|ref|NP_767297.1| hypothetical protein bll0657 [Bradyrhizobium japonicum USDA 110]
 gi|27348906|dbj|BAC45922.1| bll0657 [Bradyrhizobium japonicum USDA 110]
          Length = 367

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/353 (20%), Positives = 149/353 (42%), Gaps = 3/353 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +       ++  I +   + L  F   +L A ++     P+Y   +    E    
Sbjct: 14  RHVRTSEDRSFLVLLAAISVAFGWLLWPFSGALLWATLLAIIFAPLYRLCLETFPEWRNL 73

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+   + V+ + ++P+  +    + +  EL  +V           + L       WA+ 
Sbjct: 74  AALSTVLVVVVMVLIPVAVVIASLVEQGGELYQRVQTGEISFAHPLQQLKSALP-DWAAS 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +  +      S      + L       +   A   G + +++  S++ M+  LFFF RDG
Sbjct: 133 VSDRLAGIDLSALKERLSSLVVPAGQQLAGHAINIGQLTVEFVASLLVMLYLLFFFLRDG 192

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++ ++      L  ++   I       +R T  G+ ++A+ +G + G  +WL G+ + 
Sbjct: 193 DELNLRIRDALP-LRRSHTAAILDAFTLSVRGTIKGIILVALIQGALGGLIFWLLGLTAP 251

Query: 242 VALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G + A+++++P     + +  V +YLL+ G +     L ++G   + + D  LRP L
Sbjct: 252 LLAGALMALLSLLPVLGSALVWVPVGLYLLVAGAVTKGMILLVFGTFVIGLADNFLRPVL 311

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG  I++P        +GG+ T G  G  IGP++ A+    W   + + ++ +
Sbjct: 312 VGQSIRMPSYVVLLATLGGLATFGANGFVIGPLVAAMFLTAWHIFVGSKEQQE 364


>gi|193211909|ref|YP_001997862.1| hypothetical protein Cpar_0235 [Chlorobaculum parvum NCIB 8327]
 gi|193085386|gb|ACF10662.1| protein of unknown function UPF0118 [Chlorobaculum parvum NCIB
           8327]
          Length = 368

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 142/345 (41%), Gaps = 6/345 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++    + I  + L  ++ F   +L A I    ++P++S F+S   E  +  A++  
Sbjct: 10  NKIVVLVAALLISALFLAMIRHFLVTILLAGIFAGLAYPLFSRFLSLSGERRSLSAILTL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                +  +PL+ +F   + +   L   V+   +  +  P  L  +  G+       K+ 
Sbjct: 70  TIFFLIVFMPLVAVFSIVVGQAISLSKTVIPLVRDQLQDPEALPSLISGLPFYHDIEKYS 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                        L T  I     F          +          +FF  RDG ++  +
Sbjct: 130 DLILGRIAEVLGNLGTTVISSFSAFTWSALYDIALFI----IFWYTMFFLLRDGHTLMAK 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    L     K++      V R++  G  IIA+ +G + G A+ +AG+ + V  G I
Sbjct: 186 IQNYLP-LAENDQKRLLDRFVSVTRASLKGSLIIAVVQGSLAGLAFHVAGIENAVFWGAI 244

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+++++P    P+ +    I     GN   A  L L+ +I +  +D  +RP LVG    
Sbjct: 245 MAMLSILPLIGSPLIWVPAVIIQAFSGNYVEAIGLLLFCSIVVGQIDNVMRPILVGRDTS 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +  L  FFG +GG+   GL G  IGPV+ AL   +W        E
Sbjct: 305 MHELFIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWDIYGETFSE 349


>gi|239626667|ref|ZP_04669698.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516813|gb|EEQ56679.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 419

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 100/331 (30%), Gaps = 8/331 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK-------EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           P +    I F       +                    V+  + V  +  +    +    
Sbjct: 44  PFILGAAIAFILNVPMRNIERHLVMFRENSRLRRPVSLVVTILLVSGILFLVTFVVTPQL 103

Query: 86  MLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           +     L S V L           L +  P  +                 +         
Sbjct: 104 LKTFLTLQSSVPLFFAGLKDEMEQLFASFPQILDYVNHVEVDWQQVFQDMMGFLKTGAGT 163

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            ++     A         + +  IF I  L      G  + + L +           +I+
Sbjct: 164 MLNNTFSAAVSIVSGVSSFLIGFIFAIYILLQKETLGRQVRKLLSAFLPESVTGRIVEIA 223

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +  +   +   G  + A+  G +      L  +P  + +GV+ A  A+IP         
Sbjct: 224 SLTERTFSNFLTGQCVEAVILGTMFFVVLTLGRLPYALLIGVLIAFTALIPIFGAFIGLG 283

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V ++L++     +A    +   +   I    + P++VG  + LP +     +  G   MG
Sbjct: 284 VGVFLMLMVEPMDALIFTIIFFVLQQIEGNLIYPYVVGNSVGLPSIWVLVAVTLGGSMMG 343

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++G+ I   L +++  + ++ +       + 
Sbjct: 344 IVGMLIFIPLCSVLYALLRDEVNGRLNRPKP 374


>gi|170690238|ref|ZP_02881405.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170144673|gb|EDT12834.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 381

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 136/349 (38%), Gaps = 4/349 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  + +     +  F   ++  LI+  T +P++             +A +  +  
Sbjct: 20  IRAGLITVLAVFCFRIVVPFLDLMVWGLILAITLYPLHIRLRRSLRNRDGLVATLIVLVA 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +VP   L       ++ +++ V   +    P    ++  P        + +  S  
Sbjct: 80  FGVILVPSYLLGVAVADSIEHVMAVVKSGSFRIPPPAESVAGWPLVGQHVHDFWQQASTD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +                +    +  G   L + +++I   I + +  R   S  Q    
Sbjct: 140 LTGLAQRFAPQLKEAGRALLGTVTGLGAGLLIFFIALIVAGILMAYGERGHRSAQQIASR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P    +I+ +    IR+   G+  IA  + L++G  + + G+P+   L +   +
Sbjct: 200 I---SGPERGAQITDLCTATIRAVAQGVVGIAFIQMLLIGGGFVVMGIPAAGLLALGVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++   A +    V  ++++   +  AT  F        + D  L+P L+G  + +P  
Sbjct: 257 IGIMQLPATLITLPVIAFVMLTEGVSTATIAFSAYVFVAGLADNVLKPLLLGRGVAVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               G +GG+ T G++GLFIGPV++A+   ++   +   +   E+I  N
Sbjct: 317 VVLIGALGGMVTGGVIGLFIGPVMLAVGYELFWRWVKD-QPQAERIDEN 364


>gi|292558783|gb|ADE31784.1| Predicted permease [Streptococcus suis GZ1]
          Length = 391

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 112/337 (33%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      FL+    P++   ++ +   P+        + S T    I  V +  L I
Sbjct: 45  ISFLFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKH-KISRTVGISILFVLISLLII 103

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      +    Q        L              + L+      +
Sbjct: 104 WGLAVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIV 163

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  ++ +++     S    I +        M   LF+  RDG  +++ +       
Sbjct: 164 AYAQKFSSSAVNWASNLISTASQIIVAIL----IMPFILFYLLRDGQYLNKHITQYLPTK 219

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP
Sbjct: 220 WREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP 279

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 280 YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFV 339

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+   +  G+ G+ +G  + A I V+ K +    K +
Sbjct: 340 LLTAGQMYGVPGVLLGIPIYASIKVLVKAAFEWYKAH 376


>gi|50914110|ref|YP_060082.1| hypothetical protein M6_Spy0764 [Streptococcus pyogenes MGAS10394]
 gi|50903184|gb|AAT86899.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10394]
          Length = 393

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +    F    + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFVLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|71735238|ref|YP_275850.1| permease [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|257485897|ref|ZP_05639938.1| permease, putative [Pseudomonas syringae pv. tabaci ATCC 11528]
 gi|289628379|ref|ZP_06461333.1| permease, putative [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648133|ref|ZP_06479476.1| permease, putative [Pseudomonas syringae pv. aesculi str. 2250]
 gi|298487972|ref|ZP_07006011.1| Putative permease often clustered with de novo purine synthesis
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|71555791|gb|AAZ35002.1| permease, putative [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|298157523|gb|EFH98604.1| Putative permease often clustered with de novo purine synthesis
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|320327589|gb|EFW83601.1| permease, putative [Pseudomonas syringae pv. glycinea str. race 4]
 gi|330866056|gb|EGH00765.1| permease [Pseudomonas syringae pv. aesculi str. 0893_23]
 gi|331013494|gb|EGH93550.1| permease [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 357

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 122/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDTRRWFWIGGLALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   + +  LL L      ++  L                       G+       
Sbjct: 60  AVFGLFTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L          K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 TGKIRGLLPRQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +       V+      G+++    +     I   +    L P LV
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 347


>gi|209542427|ref|YP_002274656.1| hypothetical protein Gdia_0244 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530104|gb|ACI50041.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 376

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 99/343 (28%), Gaps = 9/343 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +++ ++++S++ +      V +A +I      + +    +          +  V +
Sbjct: 41  LQVAILLAVMVLSIWLIGDVLMVVFAATLIAVILHNLAAMVERRTRLPYWLALSLVVVVL 100

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +                +   L   +              +     +            P
Sbjct: 101 LAAIGGLGWSSGPAIAEQATRLRIALTTQAHSLRGQLNASTMGRTVLDYL---------P 151

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           QSL               I    +           ++  ++IA  +F          L  
Sbjct: 152 QSLGGNQAGGGDNGMGSRIAGSMTGVLSSAFGAAGTLAVILIAGLYFALSPALYVNGLLR 211

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L         + +  +  + + +   G  +  +  G++ G   W  GVP  +ALGV+  +
Sbjct: 212 LIPPGHRPAARTLLLVAGRTLWAWTAGQALDMLVVGILSGVGLWFIGVPLALALGVVAGM 271

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
              IP          +I L +         +    A   F     + P +    +++P  
Sbjct: 272 ANFIPYIGAFIGAVPAILLGLSQGTREGLLVMALYAAIQFFEGNVMAPLIQRHAVQMPPG 331

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            T          +GL GL +   L A +  +   +   + E  
Sbjct: 332 LTILSQTVFGTILGLPGLVLASPLTAALLAMMDRATPPLDEED 374


>gi|308177604|ref|YP_003917010.1| hypothetical protein AARI_18230 [Arthrobacter arilaitensis Re117]
 gi|307745067|emb|CBT76039.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis
           Re117]
          Length = 429

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 110/352 (31%), Gaps = 13/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++   +   +++ +  L     P L A+II    WP+      ++  S    A I  +
Sbjct: 58  QLLIVGALATFLIIGMLRLTMIVIPTLLAVIISCALWPLVIKL--RRVVSPMLAAWIVFL 115

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +       L +  + E  +LV + V        + +                  + 
Sbjct: 116 GSLLILGGIGTGLVFSVIKEWPKLVDQAVQGFNQLNEMVQGFIGTMPFNVDQSQIDNVVE 175

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                   A         +   +I +++ LFFF +DG  I    
Sbjct: 176 TVTGFLT----------SSQFGTGALNTLSAAGSFVTGMILLLVILFFFLKDGDKIWAFA 225

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S     +   W        +       G   +A  + L + +   +  VP  + LGVI 
Sbjct: 226 VSWTPRHYRNKWILSGDRALRTFGGYIRGTATVAAVDALGITATLLIVQVPLAIPLGVIV 285

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + +P     ++    ++  L+      A  +     +   +    L+P ++   + L
Sbjct: 286 FLGSFVPMVGATVAGILATLIALVTNGPVVALIVLAAVILVNQLEGNFLQPVVMANALSL 345

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     L  G    G++G  +   L+A    + K      K +    +S 
Sbjct: 346 HALVVLMALTAGTVLAGIVGAVLSVPLVAASWAVIKVWTGRDKSDAVAEASE 397


>gi|237817216|ref|ZP_04596208.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
 gi|237788029|gb|EEP62245.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
          Length = 372

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 21  MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 80

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 81  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALP-ESLEEWLK 139

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 140 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 199

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 200 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 258

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 259 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 318

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 319 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 367


>gi|227537931|ref|ZP_03967980.1| permease [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242233|gb|EEI92248.1| permease [Sphingobacterium spiritivorum ATCC 33300]
          Length = 396

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 113/334 (33%), Gaps = 15/334 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
               + +I+  +Y  +    P+L ++II  T +PI +    K     +  A+++ +  + 
Sbjct: 17  SLFALVLIIALMYVTQSVLVPLLFSIIISITLFPIANFLERKLHFVRSLAAIVSVIIAIL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    + F+      E   +        +  + V         G +  +         +S
Sbjct: 77  IIGGLIWFIV----HESIIIGKDATDITKKVMSVVESFQSWVEGRFGVQ---------RS 123

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                        ++ +  + S            ++ + I +FF         +      
Sbjct: 124 EMAAQFQEQSNKMLNNVGGYLSTAFGSIGSTLAGMVLVPIFIFFLLYYRDFFKEFFFKAF 183

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +        +   + +VI+S FLG+  +     ++  +   + G+      G + + + 
Sbjct: 184 PNTENQKVHGVLNRIYEVIQSYFLGLVTVMGIVAVLNTAGLMIMGIEYAWFFGSLASFLM 243

Query: 253 MIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++P               L  K + + A  +  W  +  F+    + P +VGG + +  L
Sbjct: 244 LLPYIGIAIGSILPALFALATKDSAWYAIGVIAWFQVVQFLEGNIITPNIVGGKVSINPL 303

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                ++ G    GL GL +   + A + VI+  
Sbjct: 304 MAIIAILIGGMIFGLAGLILALPMTAALKVIFDA 337


>gi|227552578|ref|ZP_03982627.1| permease [Enterococcus faecium TX1330]
 gi|257888193|ref|ZP_05667846.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257896916|ref|ZP_05676569.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|227178327|gb|EEI59299.1| permease [Enterococcus faecium TX1330]
 gi|257824247|gb|EEV51179.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257833481|gb|EEV59902.1| conserved hypothetical protein [Enterococcus faecium Com12]
          Length = 379

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 114/324 (35%), Gaps = 7/324 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    L  L   F P+L A  I +   PI       +        ++  + V+ L ++ +
Sbjct: 33  IFSPILKMLSAIFLPLLVAGFIYYMFDPIVVFLEKHR-IPRVLGFLLTFLVVIILVVLAV 91

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    + +  +L   + +           L+         E    +L    +   LS 
Sbjct: 92  MNVVPQLVEQTIQLTQSLPIYADETSKWLNELAQR------EEFKNFNLEEQLASANLSL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + L    +  +    ++     + + + +  +   L F ++DG      L          
Sbjct: 146 SNLFNIILVSLSASVTKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRK 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   
Sbjct: 206 ELRQTVKELNETLSAYISSTILDALIIGVMSFLAMRIFNQPYSLLLAVICGITNIIPYVG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G
Sbjct: 266 PFIGAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIG 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
                G+LG+ I   + A+I  I 
Sbjct: 326 AGSVAGILGMLICIPVYAVIKTII 349


>gi|330811059|ref|YP_004355521.1| hypothetical protein PSEBR_a4112 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379167|gb|AEA70517.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 345

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 156/342 (45%), Gaps = 5/342 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + +++ +++ +   SL+ +  F++ +    ++ F SWP+            +  A 
Sbjct: 2   INNDRLLVQILLLVLFGASLWVMAPFWSALFWGAVLAFASWPLMRLLTRWVNGRESLAAA 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           + TV  M L  VPL++L +     +++  + +  A        P WL+ +P         
Sbjct: 62  LLTVGWMLLVAVPLVWLGFNLADHVRDATAFIKDAQVDGLPEAPTWLAGVPLVGERLVGI 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  ++S         +++   +++ G   L+  LSI+F+     FFYRDG  
Sbjct: 122 WNSIDQQGAALMVSARPYLGQVGNWLLARSAQIGGGILELTLSIVFVF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  +  L E L          +V   ++    G+   A  + ++    + +AGVP  + 
Sbjct: 178 LAVFVHGLLERLIGDRAGYYIELVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGVPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T ++++IP G P+ +   + +L  KG    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGIVTFLLSLIPMGPPLVWIPATAWLAWKGEYGMAVFLGIWGTFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              LP +    G+ GG+   G +GLFIGP L+A+   +  + 
Sbjct: 298 GGNLPLVIVLLGVFGGLIAFGFIGLFIGPTLLAVAYSLLTDW 339


>gi|293391679|ref|ZP_06636013.1| PerM family permease [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952213|gb|EFE02332.1| PerM family permease [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 353

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 107/347 (30%), Gaps = 11/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +  + I+F   V++YF     AP+L A+++ +           K +     
Sbjct: 10  RRRFSDPQAMGLFAILFFGFVAIYFFSDLIAPLLVAIVLAYLLEWPVRLLNEKLKCPRLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +   S   L  + +L L      +M  L+S +             L      M  ++
Sbjct: 70  ATGLVIGSFTGLVFLVVLVLIPNLWTQMVNLLSDLPHMFNRFNEWLLSLPVRYPDMIDAQ 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    +   +          +  I    +          +    + + +FF  +D 
Sbjct: 130 TVESIFGTVKEKILGLGESALKLSLASIMNLVT--------LGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +             K+   + + I +   G  +  +   +V  + + + G+   
Sbjct: 182 RQLMDGVSRFLP-RNRTLASKVWVEMQQQIANYIRGKLVEILVVTVVTYAIFLIFGLNYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  ++P    +  T   + +     G+      + +   +   +    L PF
Sbjct: 241 LLLAVAVGLSVLVPYIGAVLVTIPVVLVAIFQFGDTHTFWYIVIAFVVSQLLDGNLLVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L    + L  L     ++      G  G+F    L  L+  +     
Sbjct: 301 LFSEAVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWP 347


>gi|226325835|ref|ZP_03801353.1| hypothetical protein COPCOM_03648 [Coprococcus comes ATCC 27758]
 gi|225205959|gb|EEG88313.1| hypothetical protein COPCOM_03648 [Coprococcus comes ATCC 27758]
          Length = 416

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 105/342 (30%), Gaps = 14/342 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------------STFLAVI 65
           ++L  +  + G   P      I F      S    K                      ++
Sbjct: 34  VVLGVIKAVWGIIFPFALGGAIAFVINVPMSFLEKKLFGKAKEKGSKAAGKLARPISLLL 93

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWT 124
             V V+ + ++ +  L       +  L++ +             +  +    M       
Sbjct: 94  TIVLVVGVIVLVMFGLIPQLTATIGSLMNSIADFIPQMQSWVREFTHNNREIMDLVNQVE 153

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            + +      +        N ++               + ++  F    LF   +    +
Sbjct: 154 FNPNKAIQWGMSILGNGAGNFMNTTMTAVGSIVSGVTTFFIAFSFACYILFQKEKLHVQV 213

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +   +           ++  +  +   +   G  + A+  G +      +  +P  + +
Sbjct: 214 RKVFFAFIPKRKAEVILEVCSLTYRTFANFLTGQCLEAVILGSMFVITLSILKMPYALLI 273

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+I +  A+IP         +   L+   +   A    L   I   I    + P +VG  
Sbjct: 274 GIIISFTALIPIFGAFIGCVLGGLLIFMVSPKQAILFILVFLILQQIEGNLIYPHVVGNS 333

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + LP +     +  G   +G++G+ I   L++++  +++E +
Sbjct: 334 VGLPSIWVLAAVTIGGNLLGIVGMLIFIPLVSVLYTLFREYV 375


>gi|58040354|ref|YP_192318.1| putative permease [Gluconobacter oxydans 621H]
 gi|58002768|gb|AAW61662.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 381

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/332 (9%), Positives = 91/332 (27%), Gaps = 9/332 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           + +    A + ++ ++      +                  + TV ++        +   
Sbjct: 42  WLIGDVLAVIFASALVAIVLHGLARMLRRHVSVIPYQGAVALVTVVILVALFGLGWYSGP 101

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +   L   ++  +                                    + T    
Sbjct: 102 AISDQFIRLKQALITQSGEL--------RTHLSGSTLGQMVLDHLPSSLGGNAASTASLG 153

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +    +    +           +++ ++IA  +F          +  L         +++
Sbjct: 154 SLGSGLAGSVTGLLSSVFGILGTLLVVLIAGLYFALSPAVYIDGMLRLVPTQHRPAAREL 213

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
                  + +   G  +  +  G++ G    L G+P  +ALGV   +   IP    I   
Sbjct: 214 MLTAGSTLWAWTAGQALDMLVVGMLSGIGLSLIGIPLALALGVEAGLCNFIPYIGAILGA 273

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ L +      A  + +   +  F     L P +    + +P              +
Sbjct: 274 VPAVLLGLSLGTHEALFVGILYCVIQFFEGNVLAPLIQRRAVHMPPALAILSQTVFGSIL 333

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G  GL +   + A +  +  ++   +++  + 
Sbjct: 334 GAPGLILASPITAALLAMGDKATAPLEDENQT 365


>gi|160914502|ref|ZP_02076717.1| hypothetical protein EUBDOL_00508 [Eubacterium dolichum DSM 3991]
 gi|158433660|gb|EDP11949.1| hypothetical protein EUBDOL_00508 [Eubacterium dolichum DSM 3991]
          Length = 380

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 109/333 (32%), Gaps = 5/333 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCLFIV 76
             L+ L   K F   ++ A +                K +  +   A++A + ++ L   
Sbjct: 39  AALMILGLCKPFIYGIMIAFVFHLPLSYFQRKLPKSIKGKTRNIVAAILALLVIIGLLTF 98

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +    +  ++ L+  +    +  + +         G        + ++      + 
Sbjct: 99  IFWIVVPQVVDSVRSLIVTLPGYVEDVMGMLE---QAISGKKIPSELVEQINEFGDGFVE 155

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + +      +  +   AS F     +  ++++  +       R    + + L +      
Sbjct: 156 AASNFVKEKLPQLLSMASGFANGIANTFMAVVIAVYLTVSKDRLIRQLKRALFAFCSEKK 215

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             Y   +  +V K   S   G    A+  G++      +   P    L VI     +IP 
Sbjct: 216 YHYLLHVGELVNKTFSSFLTGQLTEALIIGVLCYIGCLVFRFPYAPILSVIIGCTNIIPI 275

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              I   AVS  L+   N        ++G +        + P +VGG + L  L   F +
Sbjct: 276 FGAIFGVAVSALLVAFVNPLQGVFFVIFGIVLQQFESNLIYPKVVGGSVGLSGLWVLFAI 335

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             G    G +G+ +G    ++I  + +E I   
Sbjct: 336 TIGGGLFGFVGMLLGLPTFSVIYFLLREEINRR 368


>gi|126463195|ref|YP_001044309.1| hypothetical protein Rsph17029_2435 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104859|gb|ABN77537.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 358

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 108/329 (32%), Gaps = 14/329 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P +    I +   PI      +   S      + +V+++ + ++ +L +    + 
Sbjct: 27  GDVILPFIVGGAIAYFLDPIADRLE-RAGLSRVAATALISVAMLLVVVLLVLSVIPTLVS 85

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  L+       +                          +      +LS          
Sbjct: 86  QLTALIDAAPTIFRQLHSFLLDHF----------PQLSDETSTARQTLLSIGDTIKERGG 135

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +           ++  + ++ + +  F+   D   +  ++DS          ++++R +
Sbjct: 136 EVANTLLTSAYGVINAMIFMVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRRLAREI 195

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V+     G   + +  G     A    G+   + +G I   +  IP    +   A++I
Sbjct: 196 DEVLAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAI 255

Query: 268 YLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            L      G+  +   +    A+  F+    + P LVGG + L  L   F L       G
Sbjct: 256 GLALFQFWGDWLSIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFG 315

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +G+ +   + A I V+ +  I     ++
Sbjct: 316 FVGMLVAVPVAAAIGVLARFGIRQYTSSR 344


>gi|309775952|ref|ZP_07670944.1| membrane protein [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916234|gb|EFP61982.1| membrane protein [Erysipelotrichaceae bacterium 3_1_53]
          Length = 401

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 117/368 (31%), Gaps = 26/368 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKG--------------FFAPVLSALIIGFTSWPIYSSFIS 53
            + I  ++I+  I +S+YF                    P +    I F          +
Sbjct: 10  RKKIWLYVIVIAIGISIYFAFDKIDFIIRAIRSVCSLTTPFILGFAIAFLLNKPMELIET 69

Query: 54  KKEES--------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           +             +  AV+A +  + +    L  L       +  LV       +    
Sbjct: 70  RLLGKVPMKPQHKRSIAAVLAVILGITIVCAFLALLLPQLFDSIFSLVKAFPGYVEDFQK 129

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                 +      A +         ++      T   T+ +  + +    FG   L+  L
Sbjct: 130 FALDFVERY----AIDTKQVTNYITETDFFEKLTGFVTDALPQMAKATYAFGSTLLNILL 185

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           SI+  +  L    R      +   +L       Y  ++      +  +  +G  I ++  
Sbjct: 186 SIMAGLYMLIDKERLSGYAKKINYALFPTEVSEYLHRMVLASGDIFNNFIVGKAIDSLII 245

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++      +   P  + L VI  +  MIP   P       I +L   +   A    L+ 
Sbjct: 246 GVLCYIGSLIFQFPYALLLSVIIGVTNMIPVFGPFIGAVPGIVILFIIHPITALYFALFI 305

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                     L P ++G  + LP +   F +  G    G++G+FIG    A+I +  KE 
Sbjct: 306 FALQQFDGNILGPLILGDKLGLPSIGILFSVCVGGGLFGVIGMFIGVPCFAVIYMAVKEF 365

Query: 346 IMAIKENK 353
           +    + K
Sbjct: 366 VNYRLKKK 373


>gi|258544125|ref|ZP_05704359.1| GNAT family acetyltransferase [Cardiobacterium hominis ATCC 15826]
 gi|258520633|gb|EEV89492.1| GNAT family acetyltransferase [Cardiobacterium hominis ATCC 15826]
          Length = 375

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 114/340 (33%), Gaps = 7/340 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M N   +    ++       Y L     P   A ++ +   P+       +  S T   V
Sbjct: 1   MRNSNALFGLALLLFAGFLFYLLAPVLTPFFLATLLAYLGDPLVDRLQRWR-LSRTTAVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                +   F + +L +      ++  +V K+    Q               +   E   
Sbjct: 60  TVFCGIFLFFALIVLVVIPAIGGQIDRVVGKLPNYGQWLQQSALPRLAALFDITPGEFRI 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +       + S   L  N +  +   A+      + +   ++ + +  F+  RD  ++
Sbjct: 120 DDIIAAIKDNLGSSATLLKNVLAKVTGSANWI----ISFVSYLVLVPVITFYMLRDWDAM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +   L           + R   +V+     G  ++  G GL+        G+   +A+
Sbjct: 176 VAKTAELVPRKAIGTVTLLVRRSDEVLGGFLRGQLLVMSGLGLIYAIGLTALGLDMAIAI 235

Query: 245 GVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+   +++ +P    I   A++  + LL   ++ +   +     I   I    L P  VG
Sbjct: 236 GIFAGLVSFVPYLGLIVGMALAGGMALLQFQDVSHLVGVVAVFCIAQAIEGMVLTPKFVG 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             I L  +   F ++ G +  G +G+ +     A+I V  
Sbjct: 296 DRIGLHPVAVLFAVLAGGQLFGFMGVLLALPAAAVINVFL 335


>gi|149190262|ref|ZP_01868536.1| permease PerM [Vibrio shilonii AK1]
 gi|148835869|gb|EDL52832.1| permease PerM [Vibrio shilonii AK1]
          Length = 356

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 112/355 (31%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +   +I+    +++YF     AP+L A+++ +      S   +      T 
Sbjct: 10  KRRFSDPDAVSLVVILLFGFITIYFFGNLIAPLLVAIVLAYLLEWPVSKLCA-LGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V   +  + L ++ +  L      ++  L++ +             + +    +    
Sbjct: 69  SVVAVILLFISLMLLAIFGLVPTIWNQVGNLLNDIPNMYNGMQQFVATIPERYPDLAEIH 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    + + +   ++    +    +  +   A           + +I + + +FF  +D 
Sbjct: 129 LVETIMGNVKDKVLVLGENVVKGSLASLVSLA--------ALAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMVSMASGVLP-RNRRLANKVWIEMNQQISNYIRGKVLEILIVGTVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+     +IP     + T     + L   G       L +   I   +    L P 
Sbjct: 240 VLLAVLVGFSVLIPYIGAAAVTVPVAMVGLFQWGLAPQFYWLLVAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  +     ++      G  G+F    L  L+  +W          ++
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWNALPSHDDGTQQ 354


>gi|154686882|ref|YP_001422043.1| YrrI [Bacillus amyloliquefaciens FZB42]
 gi|154352733|gb|ABS74812.1| YrrI [Bacillus amyloliquefaciens FZB42]
          Length = 353

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 111/330 (33%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K  F P+  A+ I +   PI      K     T   ++            +    
Sbjct: 35  IWLVIKSLFIPIFIAVFIAYLLLPITEWLHRK-GMPRTLSLLLIYCLFFGGIGWGVYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++++L   +    ++   + + L +           T H       ++       
Sbjct: 94  PVLIEQLQDLSESIPGLAKNYNSMLKHLHN----------HTDHWPDGMHHRMDKMIQQT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +        R     LDY L    +   +F+  +D   + + +  L    +     +
Sbjct: 144 ETFLAGTIESTIRSIRFVLDYILIAATIPFLVFYMVKDIDVMKKTVWYLTPKSWRKRGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL+ G ++WL G+P  + LG+   I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLLGLIAGVSFWLFGLPYPLILGLAIGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L +  +      + +   I  FI    L P +VG  +++  +     L+ G   
Sbjct: 264 AVPALLLALAISAKAVIIVIVTIFILQFIEGNILSPLIVGRSLRMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G+ G+ +     A++ V     +    E+
Sbjct: 324 AGIPGMILAVPAAAVLKVTAIHFLRIRTEH 353


>gi|152964875|ref|YP_001360659.1| hypothetical protein Krad_0907 [Kineococcus radiotolerans SRS30216]
 gi|151359392|gb|ABS02395.1| protein of unknown function UPF0118 [Kineococcus radiotolerans
           SRS30216]
          Length = 423

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 94/312 (30%), Gaps = 11/312 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      +        A ++ V ++ + +     L      +  ++    V       
Sbjct: 85  WPLAHVL--RAVMPRALAAGLSIVLLVAVVVGIFAALIPNVASQAGDVADSAVAGLDQVQ 142

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                            L    + +  +  I        +    +       G       
Sbjct: 143 TWV--------AGPPLNLGDDEVGNLVNQGIAELQTNAQSIALSVVGGVGTVGASVGSGL 194

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           ++ + +++  FF   DG  +              +   +   +   IR   L    +A+ 
Sbjct: 195 ITFLLVLVLTFFCLSDGDRLLPWSRRWMGAQAHRHTVALGGRIWAAIRGYILSQAAVALV 254

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFL 283
           + + +G    + GVP  + L V     A IP    +       +  L+      A  +  
Sbjct: 255 DAVFIGVGLAIIGVPFALPLAVTIFFAAFIPIVGAVVTGVLAVLVALVTLGWVQALIVLG 314

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +   +    L+P LVG  + L        +  G    G++G F+   + A++ VI +
Sbjct: 315 IVLLVQQLEGNVLQPLLVGKSLALHPAVVIGSVTIGGTLFGIVGAFLAVPVAAILTVILR 374

Query: 344 ESIMAIKENKEK 355
                +  ++ +
Sbjct: 375 YVHHELVPDEPE 386


>gi|257885399|ref|ZP_05665052.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257821255|gb|EEV48385.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 379

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 114/324 (35%), Gaps = 7/324 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    L  L   F P+L A  I +   PI       +     F  ++  + V+ L ++ +
Sbjct: 33  IFSPILKMLSAIFLPLLVAGFIYYMFDPIVVFLEKHR-IPRVFGFLLTFLVVIILVVLTV 91

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    M +  +L   +             L+         E    +L    +   LS 
Sbjct: 92  MNVVPQLMEQTIQLTQSLPTYADETSKWLNELAQR------EEFKNFNLEEQLASANLSL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + L    +  +    S+     + + + +  +   L F ++DG      L          
Sbjct: 146 SNLFNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRK 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   
Sbjct: 206 ELRQTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G
Sbjct: 266 PFIGAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIG 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
                G+LG+ I   + A+I  I 
Sbjct: 326 AGSVAGILGMLICIPVYAVIKTII 349


>gi|257879060|ref|ZP_05658713.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257881685|ref|ZP_05661338.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257890914|ref|ZP_05670567.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|258615305|ref|ZP_05713075.1| hypothetical protein EfaeD_06288 [Enterococcus faecium DO]
 gi|260558584|ref|ZP_05830780.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|257813288|gb|EEV42046.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257817343|gb|EEV44671.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257827274|gb|EEV53900.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|260075758|gb|EEW64064.1| conserved hypothetical protein [Enterococcus faecium C68]
          Length = 393

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 40  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 98  LGSIWLIPFLEEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 157

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  RD     Q + ++    
Sbjct: 158 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRDPQKFYQSVLAIVPPA 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 214 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 274 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 334 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 370


>gi|89096022|ref|ZP_01168915.1| hypothetical protein B14911_25035 [Bacillus sp. NRRL B-14911]
 gi|89088876|gb|EAR67984.1| hypothetical protein B14911_25035 [Bacillus sp. NRRL B-14911]
          Length = 369

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 110/333 (33%), Gaps = 5/333 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F +  F P L + +I +   PI      K +       ++  + V+      + F+    
Sbjct: 36  FFETLFMPFLISGVIYYLLRPIVYFLNRK-KVPKVVSILLIYLIVIGGTAALVYFVGPEL 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             + K+L+       +        L +        E       +         +    + 
Sbjct: 95  QRQFKDLMDNYPQYIEGLRNKADELQNSAWFSRFQENDYITFDY----ITEQMSSYFKSN 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +    +    I       I+ +   +F+  +D    S+ +     +   A  +KI +
Sbjct: 151 FSDLSSRLTGVFSIVTSVVTVIVTVPFIVFYLLKDSEGASKGMVRYLPYFQAAETRKILK 210

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  I++   G+++   Y + G+   + L ++  +  +IP   P      
Sbjct: 211 DMDEALSSYIQGQAIVSFIVGVMMYIGYLIIGINYSLILAIVAMLTNVIPFLGPFLALVP 270

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    + F A  + L   +   I      P ++G  + +  L     L+      GL
Sbjct: 271 AVIVGFTMSPFMALKVILVVIVVQQIDGNVSSPLIMGRKLDVHPLTIILILLVAGNLAGL 330

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G+ +     A+I VI   +       K     
Sbjct: 331 IGMIVAVPAYAIIKVIISHAYRLYTLKKADRDQ 363


>gi|153933638|ref|YP_001384110.1| hypothetical protein CLB_1788 [Clostridium botulinum A str. ATCC
           19397]
 gi|153935595|ref|YP_001387650.1| hypothetical protein CLC_1795 [Clostridium botulinum A str. Hall]
 gi|152929682|gb|ABS35182.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931509|gb|ABS37008.1| putative membrane protein [Clostridium botulinum A str. Hall]
          Length = 364

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 111/328 (33%), Gaps = 1/328 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I   +        P + A  I +   P+   F +K +    F  +I  + V+ L I+ + 
Sbjct: 32  IYSFMKSFLSILVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIITYIIVIGLLILFIN 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  + +L           I                    +  ++  +L     +
Sbjct: 92  TFVPKIIKNIGDLFVHSPDYINQTIQWFNDNIKYSKVYDMLMENYQISNNIPNLLNKI-S 150

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    ++       +F    + +   +I  I  L        ++ + + +L      + 
Sbjct: 151 NLTNTFLNTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKFILALSGEKNYSK 210

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                + V  V     +G +I ++  GL+  +   +  VP    +  I  I  MIP   P
Sbjct: 211 ILSFFKEVDIVFSKYIIGKSIDSLIIGLMCFAGLTIMKVPYAALISFIVGITNMIPYFGP 270

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +  + +  N   A  + ++  I        L P ++G  + L  +   F +  G
Sbjct: 271 FIGMIPAFIITLFFNYIKAIWVLIFIIILQQFDGWYLGPKILGNQVGLSPIWIIFAITIG 330

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIM 347
             T G++G+F+   ++A+I +   + I 
Sbjct: 331 GGTFGVMGMFLSVPIVAIIKIYLDKYIE 358


>gi|320323392|gb|EFW79480.1| permease, putative [Pseudomonas syringae pv. glycinea str. B076]
          Length = 357

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 122/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDTRRWFWIGGLALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   + +  LL L      ++  L                       G+       
Sbjct: 60  AVFGLFTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L          K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 TGKICGLLPRQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +       V+      G+++    +     I   +    L P LV
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 347


>gi|149926550|ref|ZP_01914811.1| hypothetical protein LMED105_14163 [Limnobacter sp. MED105]
 gi|149824913|gb|EDM84127.1| hypothetical protein LMED105_14163 [Limnobacter sp. MED105]
          Length = 359

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 99/356 (27%), Positives = 165/356 (46%), Gaps = 1/356 (0%)

Query: 1   MRETMLNPQGIMR-WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M E +  P+ ++     + I++ +   L  F   +L A II    WP++     +     
Sbjct: 1   MAEHLRQPKSLISTLFTVLILVGAAIVLSPFLLAILWAGIIATAFWPLHCRIRGRFPGKP 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A + T+ V  L + P++ L  + + ++ E+ + +  A+  G+ VP WL  IP     
Sbjct: 61  NGAAFLTTLVVAFLLVGPMIGLIVFMVQDILEITTFLRQADDSGVAVPDWLPQIPVLGEM 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                +                 T  +  +   AS   +  L    ++ F +  LFFFYR
Sbjct: 121 LVASWQEYLSVPKQISGLLRETLTQRLGDVQGTASAILLELLGRVATLFFALWVLFFFYR 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG SIS +++ +G       WK     +P  +R+   G+ I++  E ++L   +   GV 
Sbjct: 181 DGSSISIRMNRIGTDWLGQRWKPYVSHMPPALRAAVNGLVIVSFAEAVILSVLFAACGVY 240

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + V LG ITA++A IP  AP     + + L + G+   A  L   G + + I D  +RP 
Sbjct: 241 APVLLGTITALIAFIPMAAPGLLAILGMILFLSGHGAEAIVLITVGMLVVLIADYLVRPL 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+ G   LPFL   FG+ GGV TMG++GL IGPVL+ L+ V + E+  A   +  +
Sbjct: 301 LIQGGTHLPFLAVLFGVFGGVITMGIVGLIIGPVLLVLLVVFFDEASHAHHHDTPE 356


>gi|325068678|ref|ZP_08127351.1| hypothetical protein AoriK_12686 [Actinomyces oris K20]
          Length = 440

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 107/336 (31%), Gaps = 11/336 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +++ ++  +   +   F  +  AL+      P+ + F             +A ++
Sbjct: 95  GLGIIIVIGLVFYATSQVIPVFIGLFMALVFTSILQPMVNLFAR--IMPRYPATFLALLT 152

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +      + ++      +   L S+        +                 L  + + H
Sbjct: 153 TIGAIAGLVTYVVASVTSQWSSLASQFGDGLNTIMDFLEKGP--------LHLTQQQIYH 204

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L +        +    +           +D    +   +    FF   G  + +   
Sbjct: 205 QLQLWLRQGQHYLQSNAPSLASEVLSNASAVVDVLTVLALALFVTIFFLASGGRMWRWFL 264

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +           + +            G  ++A+ + ++ G    LAG+P    L V+  
Sbjct: 265 NELPATMRESTHRAAGAGWYTFAGYARGTVLVALTDAIMAGIFLQLAGIPLAAPLAVLVF 324

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A IP    P++     +  L  G       + +  A    I    L+P ++G  + L 
Sbjct: 325 IGAFIPIIGAPLAMLVAMVVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIMGRQVSLH 384

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    G+  G    GLLG  +   L++++  ++ E
Sbjct: 385 PVVVIIGVALGTYAAGLLGAIVAVPLISVLWSVYSE 420


>gi|170016551|ref|YP_001727470.1| permease [Leuconostoc citreum KM20]
 gi|169803408|gb|ACA82026.1| Predicted permease [Leuconostoc citreum KM20]
          Length = 367

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/322 (14%), Positives = 105/322 (32%), Gaps = 10/322 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P++ A  + +   P+ +         K+       V+  +  + +    L+ L
Sbjct: 40  FISTVFVPLVVAGFLYYVLKPLLTLIKRIQIRGKKIPHQLAVVVTFIFFLSVIAGALVVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L   +    Q          +       +      LS   S    +    
Sbjct: 100 VPTLIREITNLADSLPSFAQDMQQFATKTMNSHWFENLN------LSINVSEVKNAVGKY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +                + +++I + + LF+   D       +  +          
Sbjct: 154 AASFLTITAGTLGTVVTTVTSFTINLITIPVVLFYMLSDSERFVPAIKKMFPARHAEKIS 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   + + I     G  I     GL +   Y++ G P    LGVI  I  ++P   P  
Sbjct: 214 ELMAKMDRTIEKYISGQAIEMGFVGLSMTIGYFIIGQPYAWLLGVIAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               S+ +    +      + +   +   +    + P ++G  + +  L   F L+    
Sbjct: 274 GVVPSLIVASTQSWKQVIFVLIVMTVVQQLDGNFIYPNVIGKSLAIHPLTIVFLLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G++G+ +   + A++ VI K
Sbjct: 334 LWGIVGMILIVPVYAVLRVIVK 355


>gi|257882205|ref|ZP_05661858.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|293568382|ref|ZP_06679703.1| transport protein [Enterococcus faecium E1071]
 gi|294623135|ref|ZP_06702021.1| transport protein [Enterococcus faecium U0317]
 gi|257817863|gb|EEV45191.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|291588903|gb|EFF20730.1| transport protein [Enterococcus faecium E1071]
 gi|291597504|gb|EFF28669.1| transport protein [Enterococcus faecium U0317]
          Length = 379

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 115/324 (35%), Gaps = 7/324 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    L  L   F P+L A  I +   PI       +     F  ++  + V+ L ++ +
Sbjct: 33  IFSPILKMLSAVFLPLLVAGFIYYMFDPIVVFLEKHR-IPRVFGFLLTFLVVIILVVLTV 91

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    M +  +L   + +           L+         E    +L    +   LS 
Sbjct: 92  MNVVPQLMEQTIQLTQSLPMYADETSKWLNELAQR------EEFKNFNLEEQLASANLSL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + L    +  +    S+     + + + +  +   L F ++DG      L          
Sbjct: 146 SNLFNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRK 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   
Sbjct: 206 ELRQTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G
Sbjct: 266 PFIGAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIG 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
                G+LG+ I   + A+I  I 
Sbjct: 326 AGSVAGILGMLICIPVYAVIKTII 349


>gi|298491600|ref|YP_003721777.1| hypothetical protein Aazo_2806 ['Nostoc azollae' 0708]
 gi|298233518|gb|ADI64654.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 372

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 105/337 (31%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ L+     + +A+++  T   +  SF S           ++     
Sbjct: 7   IGLIALVLSLYILWQLREVLLLIFAAVVLATTLNRLARSFQS-LGMKRGLAVFLSVSIFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I     +      + +EL  +V    +                    +   +    +
Sbjct: 66  AGVIGFFWLIVPPFTQQFQELTLRVPQGFERINTWVDEQRTQIPEQLVPFIPDLNGLIAE 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                          + +   +  F    L   L+I+ +++    F  +  +  +    L
Sbjct: 126 ----------AQPLFNRVLGNSFAFVSGSLVIVLNILLVLVLTGMFLANPNAYRKVFVRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    + I       +     G  I     GL+      + GV + +ALGV+   M
Sbjct: 176 FPSFYRRRVEGILSQCEISLERWVTGAFIAVCVVGLMSMVGLSILGVKAALALGVLAGFM 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ + +  + +    + +            + P ++   + L    
Sbjct: 236 NLIPNLGPTMSVVPAMAIALLDSPWKPILVLILYFFIQQTESNFITPVVMAHQVSLLPAV 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +  V   G LGLF+   L  +  +  +E ++ 
Sbjct: 296 TLVSQLFFVTFFGFLGLFLALPLTVVAKIWVEEVLVK 332


>gi|157150464|ref|YP_001450150.1| putative permease [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075258|gb|ABV09941.1| putative permease [Streptococcus gordonii str. Challis substr. CH1]
          Length = 388

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 112/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + F+     PV+ A ++ +   P+      + + +      I  V +  L I
Sbjct: 42  ISFIFTPIIEFISVIMLPVILAGLLYYLLNPLVDMMEKR-KINRLVAITIVFVLITVLLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L  +      ++      +    +    +   L D       SE +   +        
Sbjct: 101 WGLAVVIPNLQAQIVSFFRNMPSYLKQSKKIIDDLLD----SRLSEEFRPQIEQVTENIS 156

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   +N       +AS F        +++I M   LF+  RDG ++   +       
Sbjct: 157 SQLTTWASNFSARAVNWASHFVSAASQVIVAVIIMPFILFYLLRDGKNLKGYITQFLPKK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   V   + +   G   +AI    +    + + G+   V L V+  ++ ++P
Sbjct: 217 LREPVGQVLSDVNSQLANYVRGQITVAIIVAFMFMILFKIIGLRYGVTLAVVAGVLNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMLPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLSIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPVYASAKVVITAIFKWYK 371


>gi|257899989|ref|ZP_05679642.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257837901|gb|EEV62975.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 393

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 115/337 (34%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 40  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 98  LGSVWLVPFLEEQTKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFTSIDDVTSDIA 157

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+          I  FF  R+     Q + ++    
Sbjct: 158 GFIGNYWESGAQRISNIFSTVTAIFITLFTG----PIVTFFLLRNPQKFYQSVLAIVPPA 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 214 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 274 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 334 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 370


>gi|291521293|emb|CBK79586.1| Predicted permease [Coprococcus catus GD/7]
          Length = 449

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 110/328 (33%), Gaps = 11/328 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSF----------ISKKEESSTFLAVIATVSVMCLFIV 76
           +    +P L A +I +   P+ +                +       ++A V V+    +
Sbjct: 64  ILSTLSPFLIAFLIAYFINPLVNRIDHILFSRTASQKFAKLHKFLSLLLAYVIVIGFIAL 123

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L F+    +  + EL+ +        +     L++    +  + +     +   +    
Sbjct: 124 VLTFVIPQIVESILELIRQSSSLYDTIMTNLNLLNERYPNIDFAYIIDTINNALPNAINS 183

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               + T+ +  I           ++  L+ +     +   +R    + + + +L +   
Sbjct: 184 V-QAVMTDIVPMIYNAGMSIISWIINIILAFVISCYLMSSKHRIIHGMKRIIYALFDQKT 242

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                   +    +     +G  + ++  G++      +  +   + + +I  +  MIP 
Sbjct: 243 AYKVIFTIKECNHIFGQYIIGKALDSLIIGIICFVLMCILHLQYALLISIIVGMTNMIPY 302

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P       + +L+  +   A    +   +        L P ++G    L  +   F +
Sbjct: 303 FGPFIGAIPGLIILLIISPKQALIFLILIFLLQQFDGTILGPKILGDSTGLSPIWIIFAI 362

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             G  T G++G+F+G  ++A++  +   
Sbjct: 363 TVGGATCGVVGMFLGVPIIAVLVYLMNH 390


>gi|312139534|ref|YP_004006870.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311888873|emb|CBH48186.1| putative integral membrane protein [Rhodococcus equi 103S]
          Length = 387

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/350 (10%), Positives = 96/350 (27%), Gaps = 19/350 (5%)

Query: 10  GIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            I+  ++            + ++ F   +  A +   T  P+      +          +
Sbjct: 31  AIVYILLAVAAYQVSGWLFHHIRDFLGMLFLAWLASVTIEPVVDRLE-RTGMRRGLGTGL 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   I  +         ++ +L+  +  A                          
Sbjct: 90  VLFGTIVFAIGFIAIFGALLAEQLAQLLGALPDALTRVTDWANR-------------KFG 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I        +  +             +        +++ +F+    G  + 
Sbjct: 137 TDFATGKDLINITPETVRDLAEKYTPGVLGVVSTLVGVIFQAATVLLFVFYMSAQGPQLR 196

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + S            +  I         +   I+A    +  G  + + GVP  + L 
Sbjct: 197 RTISSWFPARQQKVIASVWEISVDKAGGYVVSRVILAAFSAVATGIFFLIIGVPYWLPLA 256

Query: 246 VITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           + T +++  IP         +   +       +A  + L+G     I +  L P +    
Sbjct: 257 IWTGVVSQFIPTLGTYLAIGLPAVIAAAAQPLDAVWVILFGTAYQQIENYILHPRITSRT 316

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + +     F  ++ G    G +G  +   ++A+I  I +      +  +E
Sbjct: 317 VSIHPAVAFGSVIVGASLFGAIGALVSVPVVAVIQAIVETYGHRYELVQE 366


>gi|253576668|ref|ZP_04853995.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843878|gb|EES71899.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 364

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 121/345 (35%), Gaps = 9/345 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI    +  +     P+  +  + +   PI      K + +     ++  +    +  
Sbjct: 26  VSFIFNPLVTLVSILIVPLTISGFLYYLLRPIVQFLERK-KLNRVLSILLIYLLFAGVIT 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L+ ++     ++ E ++ V             + D       +   +   +      +
Sbjct: 85  IFLIVVWPPLRRQIIEFMNNVPKMINGLQTQFNDIRD-------NRYLSMVTNETSPELM 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T    + ++ I  + S       D+ + +  + I L++  ++   ++  L  +    
Sbjct: 138 SKVTEYLNSAMEAISGYLSHVVTFLNDFVIVVGTVPILLYYMLKEDERVTPLLVRMLPSR 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   +  +++    G  I A+    +    +WL G+P  + L V+ A+   IP
Sbjct: 198 YRRDGASVIHEIDNMLKGFIAGRMISAMLLAFMSFIGFWLIGLPYPLLLAVVGALFNFIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +      + +    +      + +   +   I    + P++ G  I +  L T   
Sbjct: 258 YFGALLGAIPCVIVAFTVSPSMVFWVIVIVVVAQQIEGNLISPYIYGKTINIHPLTTIVL 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI-WKESIMAIKENKEKISSN 359
           L+      G+LG+ +   +  ++ +I  K   +   E  E+++ +
Sbjct: 318 LLVAGDFGGILGMILAIPVYMMLKIIVLKAHKLYFAEKIEELTES 362


>gi|71066178|ref|YP_264905.1| PerM family permease [Psychrobacter arcticus 273-4]
 gi|71039163|gb|AAZ19471.1| probable permease protein, PerM family [Psychrobacter arcticus
           273-4]
          Length = 367

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 120/345 (34%), Gaps = 7/345 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + + +V LY +     P + A ++ +   P+                ++   
Sbjct: 11  RRLFIVVAIVVAMVLLYLMMPVIVPFVFAFVLAYLFNPLVKRLSKY--IKRWIAIIVVYS 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++    ++ L +L      +++     +         V R        +   EL +K  S
Sbjct: 69  TITLSMVMLLWWLIPTLWHQLQAAWDYLPQLLTWYNEVVREWFASNSRIRLPELESKGFS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++L    ++  K      +        M F++    I+ + I  F+F  +        
Sbjct: 129 --ETLVEYMQSNYKFEDASTMMSQILASSMNFINNAGLIVLVPILTFYFLFNWDQRLHTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I++   + + +   G  ++ +  G +      L G+   + +G++ 
Sbjct: 187 KMAIPAPYCKKVIQIAQECDRALMAFIKGQLLVMVLLGAIYAVQLQLIGLELGLIIGMVA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          +I   +     +    + +     I        L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGFVAAIIACLFQFGLDWTYLSLIVGAFLIGQAAEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L  L   F ++ G   +G +G+ I   + A++ V+++   +  +
Sbjct: 307 GLSPLWVIFSVLAGASLLGFVGMLIALPVSAVLNVLFRHFYVHYQ 351


>gi|289207740|ref|YP_003459806.1| hypothetical protein TK90_0555 [Thioalkalivibrio sp. K90mix]
 gi|288943371|gb|ADC71070.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. K90mix]
          Length = 364

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 110/320 (34%), Gaps = 6/320 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   + + I+ V+LY L     P L AL+IG+   P+ +    +   S T   ++  V 
Sbjct: 16  TLAALVGLVILGVALYLLAPILTPFLIALLIGYLFNPLVTRLAVRTGGSRTLATLVIFVL 75

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           VM      +L L    M + + L+  +           R   +   G     L    L  
Sbjct: 76  VMLGLAGLVLVLIPLAMAQFERLMLLLPEVIAWFDEQVRPWIEQQAGDRLPALEPAALQ- 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +             +  +        +   L+++ + +  F+  RD   +   L 
Sbjct: 135 ---ELLAEHWREAGGLAGGLLHWLGSSTSALVLGVLNLVLIPVVSFYLLRDWPRLVAGLH 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +     + +      + +   G  ++ +  GL       +AGV   +A+G+I  
Sbjct: 192 DLLPRAWRDPVTRFAVESDNTLGAFLRGQLLVMLALGLFYAITLSVAGVQMGLAIGLIAG 251

Query: 250 IMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +++ +P    I    +  +  L           + +  A+   +    L P+LVG    L
Sbjct: 252 LVSFVPYVGVIVGIVLATAAVLFQGDGWTLLLAVLVIFAVAQVLESVVLTPWLVGDRTGL 311

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             +   F ++ G +  G  G
Sbjct: 312 HPVAVIFAVLAGGQLFGFFG 331


>gi|307946764|ref|ZP_07662099.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
 gi|307770428|gb|EFO29654.1| ATP/GTP-binding protein [Roseibium sp. TrichSKD4]
          Length = 361

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 112/353 (31%), Gaps = 10/353 (2%)

Query: 5   MLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + +  WMI + + +  ++       P ++ + + +   P+             +  
Sbjct: 1   MTLRRQVQFWMISLGVFIAFMWLFSPVLLPFVAGMAVAYLLDPVCDRLED-LGMKRLWAT 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +   +S + + ++  L +      ++   + +          +            A    
Sbjct: 60  LTILLSFIFVLVLFFLLILPVLGNQLAAFLERFPELISQLQGLVSRDLIERLAAAAGMTG 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +   +L     T++       + +     G   L      +   +  F+   D   
Sbjct: 120 EDLQASFTNLLGQGATWIAK-----LAQSIWSGGQALLSIISLFVITPVVAFYLLLDWDR 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  ++DS          + ++  + + +     G   + +  GL    A  + G+   + 
Sbjct: 175 MIARIDSWLPRDHVVEIRGLACEMDQAVAGFVRGQVSVCVTLGLFYAIALGVVGLNFGLL 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +G+   +++ IP         VS+ +       +      +     +  F+    L+P L
Sbjct: 235 IGMGAGLVSFIPFVGAGLGFLVSVGVALVQFWPDWPWVVAVGAVFGVGQFLEGNILQPKL 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG    L  +   F L       G +G+ I     A+I V+ + ++     + 
Sbjct: 295 VGDSTGLHPVTLMFALFAFGYLFGFVGMLIAIPAAAMIGVLARFALRQYLASP 347


>gi|302185038|ref|ZP_07261711.1| hypothetical protein Psyrps6_01802 [Pseudomonas syringae pv.
           syringae 642]
          Length = 354

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 140/322 (43%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTMLYKNVETGQLDIAGYLAEFKDLLPHSVQALLDRLGMGDLEGLRDKIAKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GL G  IGP++ AL    W
Sbjct: 319 SVFGLNGFVIGPLVAALFMSSW 340


>gi|149914373|ref|ZP_01902904.1| hypothetical protein RAZWK3B_20271 [Roseobacter sp. AzwK-3b]
 gi|149811892|gb|EDM71725.1| hypothetical protein RAZWK3B_20271 [Roseobacter sp. AzwK-3b]
          Length = 354

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 111/342 (32%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   + +++L+FL     P +    I +   P+      +   S      + T+  + +F
Sbjct: 14  VAAAVFVLALWFLGDVILPFVLGGAIAYFLDPVADRLQ-RMGASRALAVSLITLGALMVF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L +    + +   L+            V                     +      
Sbjct: 73  VLMALLVIPTLVQQSLALIDTAPQFFNKFQQVL----------TERFPAIVDENSTLRQS 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +++           +           L+  L  + + +  F+   D   +  ++D L   
Sbjct: 123 LIAVGETIRERGGEVLNSLLSSAASLLNVVLLFVIVPVVAFYLLYDWDRMVGRIDELLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + + + S   GM  + +  G     A  L G+   + +G +  ++  I
Sbjct: 183 DHAPVIRRLAGEIDQTLASFIRGMGTVCLILGTYYAVALMLVGLQFGLVVGALAGLITFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+  +   +              L P LVG  + L  + 
Sbjct: 243 PYVGALVGGALAIGLALFQFWGDWVSIGLVVAIFVAGQVAEGNFLTPKLVGSSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F L       G +G+ +   + A I V+ +  +    +++
Sbjct: 303 LIFALSVFGALFGFVGMLVAVPVAASIGVLARFIVAQYMDSR 344


>gi|256390449|ref|YP_003112013.1| hypothetical protein Caci_1247 [Catenulispora acidiphila DSM 44928]
 gi|256356675|gb|ACU70172.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 388

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 111/357 (31%), Gaps = 21/357 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
             P   +  +  F +L + Y  K           +  AL++     P      ++     
Sbjct: 27  RTPPFAIGLVGGFGVLAAYYLGKTLTNVVDIIVMITMALVLAAGLNPFVEMLTAR-GFHR 85

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            +   I  ++ + LF   ++ +      +   LV                + D    +  
Sbjct: 86  RWAVTIVALAALGLFAGFIVVIAKPLTDQTSSLVHN-------------GVPDGLKKLQE 132

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +    +       +  L   F   +    +   A  FG   L        +++   +F  
Sbjct: 133 NSTIQRLDKKYHLITKLQNWFTTADTTKTLAGGAFGFGKAVLTSVFKAFTILMLTLYFLG 192

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +++     L           ++  V   I     G  +++    L    A  L GV 
Sbjct: 193 SLPAMTSGGLKLVPRSRRERAADLTDRVLNRIGGYVSGALVVSTCATLASWLAMSLIGVR 252

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  +  +IP              +L+  + F A    ++  +   + +  + P
Sbjct: 253 FALPLALLVGLTDLIPIIGATFGAFIACTVILLLDSPFKALAALIFFVLYQQLENYLIYP 312

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            ++   + LP        + G   +G+ G  +   L A + VI ++ ++  ++   +
Sbjct: 313 RVMSRTVDLPPAVAVIAALAGYAILGVSGALLFIPLTAGLLVIVRQIVLPAQDRDPE 369


>gi|311898142|dbj|BAJ30550.1| hypothetical protein KSE_47700 [Kitasatospora setae KM-6054]
          Length = 481

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 88/303 (29%), Gaps = 14/303 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I     P  S    +     +  A +  ++ +    +   F+F+     +  + ++V   
Sbjct: 168 ISALLEPTVSWL-RRHGVPRSLAAAMTFLAGLASIALVGWFVFWQVSSNLDSVTTQVQAG 226

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                             W             +      T       + +         I
Sbjct: 227 VLKLR------------GWLLNGPFHLTPDQINNFTNQITTAIGKNSEQLTSAGFTGVTI 274

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            ++    ++      FF   DG  I   +                      + +   G  
Sbjct: 275 AVELLTGVVLTAFTTFFLLYDGARIWSWVLRGLPRHSRYAMAGAGPKAWATLTAYVRGTV 334

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNA 278
           ++A  + L +G    + GVP  + L VI  + A +P    +   T   +  L+   +  A
Sbjct: 335 VVAFIDALCIGIGLGVLGVPMAMPLAVIIFLGAFVPLVGALVTGTIAVLIALVTVGLGKA 394

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                       +    L+P ++G  +++  L    G+  G    G+ G  +   L+A+ 
Sbjct: 395 LIALAILVGVQQLEGHILQPLILGRAVRVHPLAVVLGVAAGSILGGIPGAIVAVPLIAVT 454

Query: 339 AVI 341
             +
Sbjct: 455 NTV 457


>gi|257792294|ref|YP_003182900.1| hypothetical protein Elen_2556 [Eggerthella lenta DSM 2243]
 gi|317490215|ref|ZP_07948703.1| hypothetical protein HMPREF1023_02403 [Eggerthella sp. 1_3_56FAA]
 gi|257476191|gb|ACV56511.1| protein of unknown function UPF0118 [Eggerthella lenta DSM 2243]
 gi|316910709|gb|EFV32330.1| hypothetical protein HMPREF1023_02403 [Eggerthella sp. 1_3_56FAA]
          Length = 429

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/359 (11%), Positives = 114/359 (31%), Gaps = 16/359 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++    +   ++  +++     L      V+ +++I F      +    K       
Sbjct: 16  RSFLIVWTIVGGILLTGVLVYLFNILSVPIGIVIWSIVIVFCLRGPVNKLE-KLGVPRVA 74

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGM---LEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              IA V +  +  +  L +F        +   L+  +    Q        L      + 
Sbjct: 75  GTTIAYVLMFVVLALVGLLMFSPAFGVGDQFTNLIESIPGYVQTIAGWGNDLYTRYADVL 134

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            ++     +++     +   +    +            G   ++  +++ F ++  F+  
Sbjct: 135 QNDTVQTWINNALDAIVSWASTFARDS----ANGVVAIGTGLVNTFVALGFALVVAFWIL 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +   + ++   L         + +     +V+     G  +     G+     +   G+
Sbjct: 191 MELPQLGRECMRLVNPKRHEDLEMLHVTFTRVMGGYIKGTLLQCAIIGVGCVVLFGAIGI 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P++ ALG I  ++ +IP   P    A++  + +  + + A            IV   + P
Sbjct: 251 PNYAALGGIAGLLNIIPIVGPWLGGALAAIVGVFVSPWIAVIALGGTIAIQQIVYTFISP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMG--------LLGLFIGPVLMALIAVIWKESIMAI 349
            ++   + +    T   L+ G    G        L+G+      +A+   ++       
Sbjct: 311 KIMANSVDVHPALTLIALMAGSAIGGAMSGFTGSLVGMLASIPAVAVAKSVFVYYFEKR 369


>gi|291459908|ref|ZP_06599298.1| permease [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291417249|gb|EFE90968.1| permease [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 432

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 97/361 (26%), Gaps = 26/361 (7%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---------------STFLA 63
           II   L  +     PV+   ++ +   P+Y     K  E                     
Sbjct: 35  IIRAGLGRILNILTPVIYGAVMAYLMAPVYDLTERKLRERMERYFPGKRFPHSFARFAAT 94

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL-----------ANQHGIPVPRWLSD 112
             A + ++ +    +  +    M  +  L S +               +        LS 
Sbjct: 95  FSALLLLLLVSGSLVYIMIPELMKSLTRLSSTLPDSITLYYEKISGLLKSYPEAREALSA 154

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +    +         S      ++    +    +  +            +  + +I M  
Sbjct: 155 LYEEAYGYFSGPGSSSGSGGGTLIPNLQMAALYLSKLSSGIWSTLTWVKNILIGLIVMAY 214

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L           + L +L          +    + ++     +G  + +I  G++    
Sbjct: 215 LLNLKELLIAQFHKLLFALLPRDAARSVVEELDYINRMFGGFIIGKILDSIIIGILTFFV 274

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +  +P  + + VI  I  +IP   P         L+   N        +   +   + 
Sbjct: 275 LSIMRMPYAMLVSVIVGITNVIPFFGPFIGAIPCFVLIFLANPLQGLYFAIAILVIQQLD 334

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P ++G    L      F ++      G +G+ I     A+I  +           
Sbjct: 335 GNVIGPRILGNSTGLSSFWVLFSILLFGGLFGFVGMIIAVPTWAVILNLIARISNRRLRE 394

Query: 353 K 353
           K
Sbjct: 395 K 395


>gi|194292237|ref|YP_002008144.1| transmembrane protein [Cupriavidus taiwanensis LMG 19424]
 gi|193226141|emb|CAQ72088.1| putative transmembrane protein [Cupriavidus taiwanensis LMG 19424]
          Length = 348

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/342 (20%), Positives = 139/342 (40%), Gaps = 3/342 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +++ + +  ++ L  F++ +L   I+     P++     +        A+   +  +
Sbjct: 7   FYILLVAVTIAFIWILLPFYSAILWGTILAILFHPMHRKLTVRFGNRENLAALATLLVCV 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+P+  +      E      ++           +           + L    L+   
Sbjct: 67  LMAIIPVFLMIATLAQEAAFAYQQIRTGKWDFGQYFQTAVQALPASVEAWLNEMGLADVA 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L+             F+   A   G   L + + +  M+  +FF  RDG  IS +    
Sbjct: 127 GLQAKLTEGAAR-ISQFMAAQAVAIGQNTLQFAVGLGVMLYLVFFLLRDGAMISHRFREA 185

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L  A+ +++      V+R+T  G  ++A  +G++ G A+ L G+   +  G + A +
Sbjct: 186 MP-LSDAHTRRLVGRFTTVVRATVKGNVVVAAVQGILGGLAFLLLGINGALLWGTLMAFL 244

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P  GA + +   +IY L+ G  +    L   G + +  VD  LRP LVG   KLP  
Sbjct: 245 SLLPAVGAALVWGPAAIYFLLAGPAWKGIALIAIGTLVIGAVDNVLRPILVGKDTKLPDW 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                 +GG+   G+ G  IGP++ AL    W  S++  +++
Sbjct: 305 VVLISTLGGMSVFGINGFVIGPLIAALFMSCWHMSVIEDRDD 346


>gi|319892377|ref|YP_004149252.1| UPF0118 membrane protein YrrI [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162073|gb|ADV05616.1| UPF0118 membrane protein YrrI [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 400

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 123/354 (34%), Gaps = 20/354 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSAL-----------IIGFTSWPIYSSFISKKEES 58
            ++ ++++ I++     +   F P +              I+ +   P+ +        +
Sbjct: 34  ALLVFILVGIVIFIFDRVSYIFQPFIIIFNTIAAPIIIALILYYLFNPVINLMERY-NIN 92

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             +   I  + ++ +  + +  L      +   L+                +  IP    
Sbjct: 93  RIWGITILFLGIIGMITIAVNLLIPIVSFQFDRLMDNFPNYLNKLTSFANNMMHIPFLSD 152

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 K ++  Q               D +      F    ++  + II +   LFF  
Sbjct: 153 YYSQIEKAVTGLQEKIP--------TFADGLSSKIRVFAEAVVNITVVIITVPFVLFFML 204

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG    +  + +    F      +   + + + S   G  I++   G++L   Y + G+
Sbjct: 205 KDGHRFKEFSNKIVPPKFRKDVHDLLDKMSEQVGSYIQGQIIVSFCIGILLFIGYSIIGL 264

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  + F    L +      FI    + P
Sbjct: 265 DYALILASIAAVTSVVPYLGPTIAISPAIIISIITSPFMLIKLIVVWTAVQFIEGHFISP 324

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K  
Sbjct: 325 NIMGKTLKIHPLTIIFVLLSAGNLLGVVGVILGIPSYAILKVLVSHIFLLFKRR 378


>gi|261866811|ref|YP_003254733.1| PerM [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412143|gb|ACX81514.1| PerM [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 353

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 107/347 (30%), Gaps = 11/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +  + I+F   V++YF     AP+L A+++ +           K +     
Sbjct: 10  RRRFSDPQAMGLFAILFFGFVAIYFFSDLIAPLLVAIVLAYLLEWPVRLLNEKLKCPRLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +   S   L  + +L L      +M  L+S +             L      M  ++
Sbjct: 70  ATGLVIGSFTGLVFLVVLVLIPNLWTQMVNLLSDLPHMFNRFNEWLLSLPVRYPDMIDAQ 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    +   +          +  I    +          +    + + +FF  +D 
Sbjct: 130 TVESIFGTVKEKILGLGESALKLSLASIMNLVT--------LGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +             K+   + + I +   G  +  +   +V  + + + G+   
Sbjct: 182 RQLMDGVSRFLP-RNRTLASKVWVEMQQQIANYIRGKLVEILVVTIVTYAIFLIFGLNYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  ++P    +  T   + +     G+      + +   +   +    L PF
Sbjct: 241 LLLAVAVGLSVLVPYIGAVLVTIPVVLVAIFQFGDTHTFWYIVIAFVVSQLLDGNLLVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L    + L  L     ++      G  G+F    L  L+  +     
Sbjct: 301 LFSEAVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWP 347


>gi|115358452|ref|YP_775590.1| hypothetical protein Bamb_3702 [Burkholderia ambifaria AMMD]
 gi|115283740|gb|ABI89256.1| protein of unknown function UPF0118 [Burkholderia ambifaria AMMD]
          Length = 356

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 151/325 (46%), Gaps = 5/325 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+              T +A + TV V  L I+P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRLESERWFRNRPTLIATVITVGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  +L   +     +GIP+P  ++ +P G      W +         + +   + 
Sbjct: 95  GQAIAQEHDLRMWLQSVQDNGIPLPDVIARLPYGAAQVTEWWQANLGHP---LHAGAAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +    F  +FG           FM++ LF   R G  +S  L       F     +
Sbjct: 152 GASGEKFIAFGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGGE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API F
Sbjct: 212 LIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPIVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            GL+GLF+GP LM ++ ++W E + 
Sbjct: 332 FGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|258650755|ref|YP_003199911.1| hypothetical protein Namu_0503 [Nakamurella multipartita DSM 44233]
 gi|258553980|gb|ACV76922.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 416

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 103/321 (32%), Gaps = 15/321 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +F     L  L     P+L  L++    WP       K    +   A++A +
Sbjct: 62  RLLIIGVGLFAAFWILGQLWSVVLPILLGLLLATILWPPVRFMRRKL--PNALAAIVALI 119

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +F   +  L      +  ELV +                      W +        
Sbjct: 120 GLLVIFSGLIAVLAPQVTSQAGELVDRATAGLTTLQS------------WLAGPPFNLGP 167

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +        +    +               ++++  ++  FFF +DG      L
Sbjct: 168 DALGGLLDKGISEIQSNSQEVLGVVLGSLSAIGSAVITLVLALVLCFFFLKDGPKFVPWL 227

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +        ++ ++S  V   +         +A  +G+ +G   WL GVP  + + V+T
Sbjct: 228 RTWIGRAAGTHFAELSDRVWTALGQYVWSQAAVAAVDGVFIGVGVWLLGVPFALPIAVLT 287

Query: 249 AIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                +P            +  L+   I+ A  +     +   +    ++P LVG  + +
Sbjct: 288 FFGGFVPIVGAFVAGSVAVLVALVSNGIWTAVGVLAIVLVVQQLEGNVMQPILVGKTMNI 347

Query: 308 PFLPTFFGLVGGVRTMGLLGL 328
               T   +  G    G++G 
Sbjct: 348 HAAVTIAVVALGGTLFGIVGA 368


>gi|261855341|ref|YP_003262624.1| hypothetical protein Hneap_0728 [Halothiobacillus neapolitanus c2]
 gi|261835810|gb|ACX95577.1| protein of unknown function UPF0118 [Halothiobacillus neapolitanus
           c2]
          Length = 363

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 122/344 (35%), Gaps = 10/344 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + +  +Y L     P L+ +++ +   P+ +  +   + + T    +    ++
Sbjct: 4   IVIVGLALAMYIVYLLSPILTPFLAGVVLAYLFDPLVTRMVGW-KINRTLGTTVVFFVIL 62

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+  L L    + +  +L+S                         ++L      +  
Sbjct: 63  LVMILAGLALVPVVINQAVKLISVFPKLLAMLQDQL-------VPYINAKLGLDINLNSM 115

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +   +       + +          G   +   +++I + +  F+  RD   + Q++  L
Sbjct: 116 TQLTVQHAQEIGSVLAKSATVVFGNGSAVVLSMMNLILIPVIGFYLLRDWPHLLQRIQEL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   W  +++   +++     G   + +  G+       + G+ + V +G+   ++
Sbjct: 176 MPRRQEPQWVALAQESNQMLGGFLRGQLAVMLANGITYAIGLTIVGLETGVVIGMAAGML 235

Query: 252 AMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +P    +     A+    +  G       + L   I   +     +P  VG  I L  
Sbjct: 236 SFVPYLGNVIGITTALIAMYIQTGEFTPLLWVLLVFGIGQTLESILWQPRFVGERIGLHP 295

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   F ++ G    G  G+ +   + A++ V+ + ++   +E+ 
Sbjct: 296 VAVIFAVMAGGVLFGFFGVLLALPVSAILVVLGRHALKRYRESP 339


>gi|311743457|ref|ZP_07717263.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311312587|gb|EFQ82498.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 382

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 107/323 (33%), Gaps = 14/323 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +   ++   L      + PV  A+I+     P  +   SK    S   A +  +
Sbjct: 31  RIVTIALAAVVVGWVLGQTWMVWYPVALAIIVSTVLAPPVTWLRSK-GLPSVAAAGLVMI 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L    +  L      +  ++  +     Q                W  +   +   
Sbjct: 90  GFLGLITTLVAILTPQVAGQAPDIADQASRGLQKVRD------------WLIDGPMQLSD 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  + +      +    I               L+++ ++I  F F +DG      +
Sbjct: 138 AQITRAVGALQDRIQDSAAAISAGIFSTISTATSVVLNLVVILILTFLFIKDGHRFLPWV 197

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SLG      +  ++     + +       +I+A+    ++G A  + GVP  V L V+T
Sbjct: 198 ASLGGRRAGHHLTEVLGRSWETLGGFIRTQSIVALISATIIGIALAIVGVPLAVPLAVVT 257

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              + IP     ++     +  L+ G+  +A  + L       +    L P+L G  + L
Sbjct: 258 FFGSFIPIIGAFVTGALAVLVTLVTGSPQDALVILLVFVGVQQLEGNLLSPWLQGKTMNL 317

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
                   ++ G    G+ G F+
Sbjct: 318 HAAVILLAVLAGGSLFGITGAFL 340


>gi|304316714|ref|YP_003851859.1| hypothetical protein Tthe_1261 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778216|gb|ADL68775.1| protein of unknown function UPF0118 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 343

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 131/351 (37%), Gaps = 17/351 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYF-------LKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           +N + I   + M I+++ LYF       +K    P+  +++I +   P  S F  K    
Sbjct: 3   INKKYITYIIAMIIVILFLYFVFRNIDKIKEILFPIFISILIAYLVNPFVSFFEDK-GIK 61

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                +I    ++C+  + +LF+F     EM  L   +             + +      
Sbjct: 62  RVQSIIIVYFLLLCIMALTVLFIFPIITNEMSSLFKMLPGYIDDLTYKINDIKNNYLAYL 121

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E  T  +     L     + +  +    I             + L++I   I  F+  
Sbjct: 122 PKEFSTVLVKRTSMLNKEIASMIDASIQSIIS---------LTGHILNLILTPIITFYLL 172

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +  ++  +        + KI + +  V+     G   I+I   ++      +  V
Sbjct: 173 KDKDILKSEIKEIIPENMRGRFSKILKDLDSVMSKYIRGQIYISIIVTVLTSIGLMIIKV 232

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              V +G++  I+ +IP   PI  +  +I + +  +++     F+   +   I      P
Sbjct: 233 KYSVLIGILAGILNIIPYFGPILGSIPAIVMGLIDSLYKGIWAFVIFFLVQQIESAFFAP 292

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            ++   + L  +     L+ G +  G+ G+ +   ++A++ V+ K+  + +
Sbjct: 293 KIMSDSVDLHPITVIIALLVGEQFFGIWGMLLSVPVVAMVKVMLKDVFIEV 343


>gi|313885294|ref|ZP_07819045.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619400|gb|EFR30838.1| putative membrane protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 377

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 103/349 (29%), Gaps = 11/349 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----------KEESSTFLAVIATV 68
           +IL           P+    ++ F    I                 K+        +A +
Sbjct: 30  VILAFFRTALSVLKPIFIGGVLAFILNIIMKQIEKIYFTESDAKWVKKTRRPVSLFLAII 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V+ + +  L  +    +  + E+V+ +               D    +  +       +
Sbjct: 90  TVLLVLVFVLNLVIPQLVSVVLEIVNAIPKLVNQVQSFIVDHEDFFPPLAQAAENFDIQN 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L        +      +    +      ++  L+++  I  L    +      +  
Sbjct: 150 ITGRLVGFLNNLSQNLIGGTLATITTTL-SGIVNGILALMLAIYILLSKEKLAEQFKRLG 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +      +  +  +       G  I A+  G ++     +   P    +G +T
Sbjct: 209 QAYLPATWCRRLHYVLDVANRSFTGFIGGQLIEALIIGSLVSIGMMIFRFPYPSMIGALT 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A+IP         V   L+   +        ++  +   I    + P +VGG + LP
Sbjct: 269 GVTAVIPVLGAYISGIVGFLLISVQSPLQGLAFLVFIIVLQQIEGNIIYPKVVGGKLGLP 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L     +  G    G++G+     + + +  + K  +   +   + I 
Sbjct: 329 ALWILVAVTVGGGLFGIVGMLFAVPITSTLYTLIKNDVAYREAQMQPIK 377


>gi|297625082|ref|YP_003706516.1| hypothetical protein Trad_2875 [Truepera radiovictrix DSM 17093]
 gi|297166262|gb|ADI15973.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 437

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/376 (15%), Positives = 125/376 (33%), Gaps = 26/376 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEESS 59
           + +     +   +++ +  +  YF + F   +   L   I+ +   P+ S     +    
Sbjct: 15  QNVWVRATVQLVLLIGVGFLLWYFYRTFSFALQTALIGFIVAYVLHPLVSGMRRLRIGR- 73

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW- 118
             LA +     + L IV    L    + E+   V+ +  A     P+   +S+   G   
Sbjct: 74  -GLATVIVFFFLILLIVFGTVLLTSVVAELGRFVALIPGALDALGPLLARMSEFVLGWQE 132

Query: 119 ------------------ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                              ++     +             +    ++  P F        
Sbjct: 133 RLPEFLADRFGTGVDGVNIAQEVETRVLTLFDQATAGLVNVLQATLEQGPAFLLTGATGV 192

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +   L    +++A  +F  D   I+          +  +++ +     + +     G  +
Sbjct: 193 VSTTLQAFLILVASAYFLYDFPRITANFKRYVPVRYRPFYEDLGVKADRAVGGYLRGQLL 252

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNA 278
           IA+  G+++     LAGVP  +AL    AI  ++P   P+  T  +  L +  +     A
Sbjct: 253 IALVLGIMIYIGLSLAGVPLALALSFFAAIFNLVPYLGPVIGTIPAALLGLTTDTPFTTA 312

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               +   I   +    L P ++     L  +     +  G+   GL+G       +ALI
Sbjct: 313 ILAVVVFVIANQLEGNVLSPLILSKSTNLHPVTVLISITAGLGAFGLVGALFAVPTVALI 372

Query: 339 AVIWKESIMAIKENKE 354
            V+ +E ++      E
Sbjct: 373 KVLVEEYVLRRPAYTE 388


>gi|295699585|ref|YP_003607478.1| hypothetical protein BC1002_3959 [Burkholderia sp. CCGE1002]
 gi|295438798|gb|ADG17967.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 657

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 101/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++  +   +++ +LYF +    P+  ++++ F   P+      +          IA + 
Sbjct: 25  GLVSLITGVVVVCALYFGREVLIPITLSVLLSFLLAPLVQML-RRLHMGQLPSIFIAVLF 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +     +    +     L        Q    V          + +S         
Sbjct: 84  ALASLLAIGALIGAQLVQLANALPQYQEAIEQKIETVQEKTVGRADSLMSSAASALQRMA 143

Query: 130 PQSLKILSETFLKTNGIDFIPR-------------FASRFGMIFLDYCLSIIFMIIALFF 176
           P        T         +P+              A R     +    +   +++   F
Sbjct: 144 PSRPAPPRPTGRAARNAPQVPQQVEVHEPAPTPVQLAQRALTPAIAPIETTFIVLVVTIF 203

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G ++     + 
Sbjct: 204 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAGRLSRYFVAQLGVNLSAGGIIAIGLAII 263

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++++L   I+     A    +   +   +  +
Sbjct: 264 GVPGALLFGVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVLTLILFIVVDVVAGQ 323

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 324 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPVGLVLSTPLTLCVVTLGR 372


>gi|28868908|ref|NP_791527.1| permease [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213971899|ref|ZP_03399999.1| permease [Pseudomonas syringae pv. tomato T1]
 gi|301384469|ref|ZP_07232887.1| permease, putative [Pseudomonas syringae pv. tomato Max13]
 gi|302062184|ref|ZP_07253725.1| permease, putative [Pseudomonas syringae pv. tomato K40]
 gi|302131787|ref|ZP_07257777.1| permease, putative [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|28852147|gb|AAO55222.1| permease, putative [Pseudomonas syringae pv. tomato str. DC3000]
 gi|213923324|gb|EEB56919.1| permease [Pseudomonas syringae pv. tomato T1]
 gi|330877083|gb|EGH11232.1| permease [Pseudomonas syringae pv. morsprunorum str. M302280PT]
 gi|331016799|gb|EGH96855.1| permease, putative [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 122/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDTRRWFWIGGLALLIAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   + +  LL L      ++  L           +   +  +             
Sbjct: 60  AVFGLFTLVLMTLLLVLVPMLAKQLFRLYELAP----QILDWLQHSAMPWVQAKFGLADG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I        + +  +   A+  G+  + +  +++ + +  F+  RD   +
Sbjct: 116 FWKFDKIKAAISEHMGQAGDIVSIVLSQATASGLALIGWLTNLVLIPVVCFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++  L      +   K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 MGKVRGLLPRQRESQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +       V+      G+++    +     I   +    L P LV
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K ++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKSSE 347


>gi|66046916|ref|YP_236757.1| hypothetical protein Psyr_3687 [Pseudomonas syringae pv. syringae
           B728a]
 gi|289677079|ref|ZP_06497969.1| hypothetical protein PsyrpsF_27593 [Pseudomonas syringae pv.
           syringae FF5]
 gi|63257623|gb|AAY38719.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972386|gb|EGH72452.1| hypothetical protein PSYAR_18005 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 124/352 (35%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDMRRWFWIGGLALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +  LL L      ++  L                       G+       
Sbjct: 60  VVFGLFTLVLMALLLILVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L      A   K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 TGKIRGLLPRQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +       V+      G+++    +     I   +    L P LV
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 347


>gi|257886316|ref|ZP_05665969.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257822172|gb|EEV49302.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
          Length = 393

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 114/337 (33%), Gaps = 6/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI       +     P+L ALI+ +   P+          S     +I  V ++ L  
Sbjct: 40  ISFIFKPVGIIIATILPPLLFALILYYLLEPVIKRLSKHL--SRNLSVIIVYVIILFLLG 97

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  ++L  +   + K L+S +    Q      R   +      +   +   +    S   
Sbjct: 98  LGSVWLVPFLEEQAKTLISSLPDLFQDFQESLRQFLEKTPFADSFNQFFASIDDVTSDIA 157

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +G   I    S    IF+      I       F  R+     Q + ++    
Sbjct: 158 GFIGNYWESGAQRISNIFSTVTAIFITLFTGPIVAF----FLLRNPQKFYQSVLAIVPPA 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +K +++I  + + S   G  I +   G V    + L G+     L +   ++ +IP
Sbjct: 214 FRTDFKNLTKIANQQLGSFLKGQIIASFILGAVYWVCFLLIGLEFASVLAISAGLLCIIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       + +  + + F A    +       +    + P ++G  +++  +     
Sbjct: 274 YIGPFIAFFPGLIIAFQDSTFMAVKFVIVWFAVQLLHGDLVIPRVMGDRLQIHPITILIV 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ ++        K+ 
Sbjct: 334 LLVMGDLMGIVGVIFGIPIYTLVKLLVTFIFRKFKQR 370


>gi|172063209|ref|YP_001810860.1| hypothetical protein BamMC406_4180 [Burkholderia ambifaria MC40-6]
 gi|171995726|gb|ACB66644.1| protein of unknown function UPF0118 [Burkholderia ambifaria MC40-6]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 5/325 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + TV V  L I+P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRFESERWFRNRPTLIATVITVGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  +L   +     +GIP+P  ++ +P G      W +         + +   + 
Sbjct: 95  GQAISQEHDLRMWLQSVQDNGIPLPDVIARLPYGAAQVTEWWQANLGHP---LHAGAAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +    F  +FG           FM++ LF   R G  +S  L       F     +
Sbjct: 152 GASGEKFIAFGRQFGTKVAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGGE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API F
Sbjct: 212 LIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPIVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            GL+GLF+GP LM ++ ++W E + 
Sbjct: 332 FGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|209559329|ref|YP_002285801.1| hypothetical protein Spy49_0794 [Streptococcus pyogenes NZ131]
 gi|209540530|gb|ACI61106.1| Membrane protein, putative [Streptococcus pyogenes NZ131]
          Length = 393

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQAMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSSHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +    F    + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLFKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|47094916|ref|ZP_00232530.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|254898918|ref|ZP_05258842.1| hypothetical protein LmonJ_03855 [Listeria monocytogenes J0161]
 gi|254911594|ref|ZP_05261606.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935920|ref|ZP_05267617.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|47016798|gb|EAL07717.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258608508|gb|EEW21116.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293589541|gb|EFF97875.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 378

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDIDMKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|69245951|ref|ZP_00603723.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257880352|ref|ZP_05660005.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257891011|ref|ZP_05670664.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257894264|ref|ZP_05673917.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|258614696|ref|ZP_05712466.1| membrane protein [Enterococcus faecium DO]
 gi|260562344|ref|ZP_05832858.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|293563178|ref|ZP_06677636.1| transport protein [Enterococcus faecium E1162]
 gi|314939360|ref|ZP_07846601.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314941563|ref|ZP_07848448.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314949610|ref|ZP_07852934.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314953717|ref|ZP_07856592.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314992173|ref|ZP_07857617.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314997664|ref|ZP_07862594.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|68195481|gb|EAN09925.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257814580|gb|EEV43338.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257827371|gb|EEV53997.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257830643|gb|EEV57250.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260073268|gb|EEW61609.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|291604869|gb|EFF34345.1| transport protein [Enterococcus faecium E1162]
 gi|313588299|gb|EFR67144.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313593276|gb|EFR72121.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313594301|gb|EFR73146.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313599622|gb|EFR78465.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313641345|gb|EFS05925.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313644034|gb|EFS08614.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 379

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/324 (16%), Positives = 115/324 (35%), Gaps = 7/324 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    L  L   F P+L A  I +   PI       +     F  ++  + V+ L ++ +
Sbjct: 33  IFSPILKMLSAIFLPLLVAGFIYYMFDPIVVFLEKHR-IPRVFGFLLTFLVVIILVVLTV 91

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    M +  +L   + +           L+         E    +L    +   LS 
Sbjct: 92  MNVVPQLMEQTIQLTQSLPMYADETSKWLNELAQR------EEFKNFNLEEQLASANLSL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + L    +  +    S+     + + + +  +   L F ++DG      L          
Sbjct: 146 SNLFNIILVSLSASVSKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRK 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   
Sbjct: 206 ELRQTVKELNETLSAYISSTILDALIIGVMSFLAMRIFDQPYSLLLAVICGITNIIPYVG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G
Sbjct: 266 PFIGAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIG 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
                G+LG+ I   + A+I  I 
Sbjct: 326 AGSVAGILGMLICIPVYAVIKTII 349


>gi|300173494|ref|YP_003772660.1| integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887873|emb|CBL91841.1| Integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 384

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 101/324 (31%), Gaps = 5/324 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A ++ +   P+ +               I  + ++ +    L  + +    ++  
Sbjct: 56  APILIAGVLYYLLSPVVNLISKYTRLPRGISIGIILILLLAIIAGILTTVVFVLRSQVVT 115

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
                                        E      ++     I       T G+  I  
Sbjct: 116 FTDNWPSYWHTSQNFINETFKSDQFNPVREFLNHTNTNINQTVIDWSRKYLTTGVAGISS 175

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           FAS    + +            L++   DG   S+ +            +++   + K I
Sbjct: 176 FASILTTVGITAVA----TPFILYYMLLDGHKFSEFVAEKFPPQAQQSIQQLLTDISKQI 231

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLL 270
                G   +A    ++    + L G+P  + L ++  +  MIP    I     V    L
Sbjct: 232 AQYIRGQLGVAFAVMIMFSIGFTLIGLPYGILLALMAGLFNMIPYVGSIIAQVPVWTVAL 291

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ +
Sbjct: 292 IAGGPKMLVLAIIVLAIEQPIEGHVIAPKILGEALSIHPVTVIVVLLSSGHIFGVLGIIL 351

Query: 331 GPVLMALIAVIWKESIMAIKENKE 354
                A++ VI     M  + N E
Sbjct: 352 AVPTYAVVKVIVIRIYMWWRNNSE 375


>gi|323464519|gb|ADX76672.1| conserved membrane protein, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 400

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 123/354 (34%), Gaps = 20/354 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSAL-----------IIGFTSWPIYSSFISKKEES 58
            ++ ++++ I++     +   F P +              I+ +   P+ +        +
Sbjct: 34  ALLVFILVGIVIFIFDRVSYIFQPFIIIFNTIAAPIIIALILYYLFNPVINLMERY-NIN 92

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             +   I  + ++ +  + +  L      +   L+                +  IP    
Sbjct: 93  RIWGITILFLGIIGMITIAVNLLIPIVSFQFDRLMDNFPNYLNKLTSFANNMMHIPFLSD 152

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 K ++  Q               D +      F    ++  + II +   LFF  
Sbjct: 153 YYSQIEKAVTGLQEKIP--------TFADGLSSKIRVFAEAVVNITVVIITVPFVLFFML 204

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG    +  + +    F      +   + + + S   G  I++   G++L   Y + G+
Sbjct: 205 KDGHRFKEFSNKIVPPKFRKDVHDLLDKMSEQVGSYIQGQIIVSFCIGILLFIGYSIIGL 264

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L  I A+ +++P   P    + +I + I  + F    L +      FI    + P
Sbjct: 265 DYALILASIAAVTSVVPYLGPTIAISPAIIISIITSPFMLIKLIVVWTAVQFIEGHFISP 324

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++G  +K+  L   F L+     +G++G+ +G    A++ V+     +  K  
Sbjct: 325 NIMGKTLKIHPLTIIFVLLSAGNLLGVVGVILGIPSYAILKVLVSHIFLLFKRR 378


>gi|325672582|ref|ZP_08152278.1| hypothetical protein HMPREF0724_10059 [Rhodococcus equi ATCC 33707]
 gi|325556459|gb|EGD26125.1| hypothetical protein HMPREF0724_10059 [Rhodococcus equi ATCC 33707]
          Length = 387

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/350 (10%), Positives = 96/350 (27%), Gaps = 19/350 (5%)

Query: 10  GIMRWMIMFIIL----VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            I+  ++            + ++ F   +  A +   T  P+      +          +
Sbjct: 31  AIVYILLAVAAYQVSGWLFHHIRDFLGMLFLAWLASVTIEPVVDRLE-RTGMRRGLGTGL 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   I  +         ++ +L+  +  A                          
Sbjct: 90  VLFGTIVFAIGFIAIFGALLAEQLAQLLGALPDALTRVTDWANR-------------KFG 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I        +  +             +        +++ +F+    G  + 
Sbjct: 137 TDFATGKDLINITPETVRDLAEKYTPGVLGVVSTLVGVIFQAATVLLFVFYMSAQGPQLR 196

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + S            +  I         +   I+A    +  G  + + GVP  + L 
Sbjct: 197 RTISSWFPARQQKVIASVWEISVDKAGGYVVSRVILAAFSAVATGIFFLIIGVPYWLPLA 256

Query: 246 VITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           + T +++  IP         +   +       +A  + L+G     I +  L P +    
Sbjct: 257 IWTGVVSQFIPTLGTYLAIGLPAVIAAAAQPLDAVWVILFGTAYQQIENYILHPRITSRT 316

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + +     F  ++ G    G +G  +   ++A+I  I +      +  +E
Sbjct: 317 VSIHPAVAFGSVIVGASLFGAIGALVSVPVVAVIQAIVETYGHRYELVQE 366


>gi|194015659|ref|ZP_03054275.1| YubA [Bacillus pumilus ATCC 7061]
 gi|194013063|gb|EDW22629.1| YubA [Bacillus pumilus ATCC 7061]
          Length = 380

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/333 (15%), Positives = 120/333 (36%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  +K    P++   ++ +   PI +    K      F  ++  + ++ +  V 
Sbjct: 42  FIFTPLIVLVKTIALPIILTGVVYYLLNPIVNLLE-KFRVKRIFSILLLYIVIIGIITVT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   +M  L   +           R L+    G        K ++   S  +  
Sbjct: 101 IVSIIPFLQAQMMSLFHNLPKYVDTVEDQIRQLT----GSNFINQAQKAMNFNVSELVSK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +   T  ++        F     +  +SI+ +   LF+  +DG  +         + F 
Sbjct: 157 ASSQATKILESTFTGVGTFLGALTEVIISIVTVPFILFYLLKDGKKLPDYFLKFIPNKFR 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   +   +   + S  LG  I++   G++L   Y + G+     L +I A  +++P  
Sbjct: 217 EHTHIVLHEMNHRLSSYILGQIIVSFCIGVLLLIGYMIIGLDYAFLLAIIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIVIALVTSPIMLLKLIIVWTVVQLIEGKFISPQVMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +   ++G+ +     A++ VI        K
Sbjct: 337 TAGKLFSVVGIIVAIPTYAVLKVITTHLFDWFK 369


>gi|303238702|ref|ZP_07325235.1| cyclic nucleotide-binding protein [Acetivibrio cellulolyticus CD2]
 gi|302593821|gb|EFL63536.1| cyclic nucleotide-binding protein [Acetivibrio cellulolyticus CD2]
          Length = 349

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 117/334 (35%), Gaps = 9/334 (2%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           + ++++ + +  +Y+ +G     F P + A++I +   P+     +K +   +   ++  
Sbjct: 12  LLFLMLAVSVAFIYYYRGKIGKVFIPFIMAIVISYLLHPLVIKLENK-KIKRSIGIILIY 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +       V  +F+    +   +EL++ +             + +I       +     +
Sbjct: 71  LIFGISLAVLTIFVVPQLINNTRELINILPGITMEYRNNFNGMVNIISASKWPDDIKSAI 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +             +        +      D  LS+I       +  +D       
Sbjct: 131 FREINNGAQVAENTIIVMLKNTLSGLMKTVSTAFDLILSMIIAY----YILKDAEYFKNV 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             SL    +        R +  V+ +   G  + A+  G++      +  V   + LG+I
Sbjct: 187 SLSLVPRKWRNGIIGACREINGVLSNFIQGQILTALIVGILESIGLMIVRVKYPLILGMI 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I  +IP   P      ++ + +  +   A    +   I   + +  + P ++ G + L
Sbjct: 247 GGIANIIPYFGPFIGAIPAVAVALIESPMKAVLTIIVFVIIQQLDNGFISPKIIEGRVGL 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + T   ++ G    G++G+ +   + A+I VI
Sbjct: 307 HPVTTILAVLIGGEFFGIIGMLVSVPIAAMIKVI 340


>gi|254460825|ref|ZP_05074241.1| membrane protein [Rhodobacterales bacterium HTCC2083]
 gi|206677414|gb|EDZ41901.1| membrane protein [Rhodobacteraceae bacterium HTCC2083]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 111/342 (32%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I ++++++L     P +    I +   P+     +    S      I T+  + +F
Sbjct: 14  IATAIFMLAMWYLGDVILPFVLGGAIAYFLDPVADKLEN-LGCSRALATTIITLVAVVIF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +L +    + +   L        Q                                 
Sbjct: 73  VLMILLVVPTLINQAIALFEVAPQLFQDLQAFLAE----------RFPQALDEGSTLRQS 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +LS           +           ++  +  + + +  F+   D  +++ ++ +L   
Sbjct: 123 LLSIGETIRAKGGELLSSVLSSASSIINIVVLFLIVPVVAFYLLLDWDNMTARIYTLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  + + + +   GM  + +  G     A  L G+   + +G I  ++  I
Sbjct: 183 DHAPTVRELASQIDQTLAAFIRGMGTVCLILGTYYAIALMLVGLQFGLVVGFIAGLITFI 242

Query: 255 PGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I        G+  +   +     I   +    L P LVG  + L  + 
Sbjct: 243 PYVGALVGGALAIGLGLFQFWGDWVSLGLVAGIFVIGQVLEGNVLTPKLVGSSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ +   + A + VI +  +     +K
Sbjct: 303 LLLALSVFGSLFGFVGMLVAVPVAAALGVIIRFLVGQYLGSK 344


>gi|171317803|ref|ZP_02906983.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
 gi|171097027|gb|EDT41884.1| protein of unknown function UPF0118 [Burkholderia ambifaria MEX-5]
          Length = 356

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 154/325 (47%), Gaps = 5/325 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + TV V  L ++P+    
Sbjct: 35  WVIRDFLPAIAWACVIAIALWPLLKRFESDRWFRNRPTLIATVITVGVSLLVVLPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  +L   +     +GIP+P +++ +P G      W +         + + T + 
Sbjct: 95  GQAISQEHDLRMWLHSIQDNGIPLPDFIARLPYGAAQITDWWQANLGHP---LHAGTAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +    F  +FG           FM++ LF   R G  +S  +       F     +
Sbjct: 152 GATGEKFIAFGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGAMLHGARRAFGPGGGE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API F
Sbjct: 212 LIERMVAAVYGTVTGLVVVGLGEGAILGIAYALAGVPHAALLGLVTAVAAMLPFCAPIVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            GL+GLF+GP LM ++ ++W E + 
Sbjct: 332 FGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|227510017|ref|ZP_03940066.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227190512|gb|EEI70579.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 359

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 115/340 (33%), Gaps = 7/340 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVM 71
           I F+      F    F PVL A I+ +   PI +        +K  S T+   +  + ++
Sbjct: 20  ISFMFSPIAIFFSTIFIPVLLAGILYYMLNPIVNLLTKIPIGRKRVSRTWAVTLVFLLLL 79

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+         + ++  L + V  A   G  +               L     +   
Sbjct: 80  GIIILLATVFIPKVLNQLMNLANNVPGAINDGQNLLEKALKEMNSQQL--LKKIDFTQLT 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                + T    +  + +            +  +  + + + LF+  +DG+ ++  + S 
Sbjct: 138 QKFSTNITDYANSFFNGLTSGIGGVISAAANAVIIAVTVPVVLFYMLKDGYRLAPNIKSF 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +   + + I     G  I  +  G      Y + G+P  + LGVI  I 
Sbjct: 198 LPERHREQTMDLLSAMNRTISKYISGQMIECLFVGTFTAIGYLVIGLPYALLLGVIAGIC 257

Query: 252 AMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +IP   P    A ++ +    G   +     +   I   I    + P ++G  +++  L
Sbjct: 258 NIIPYLGPYIGIAPALIVSFSHGGWLSMVYNIVIVIIVQQIDGNLVYPNVIGKSLQIHPL 317

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                L+      GL+G+ +   L A++ VI        +
Sbjct: 318 TIIIILLAAGNIAGLMGMILAVPLYAIVKVIVVHLYNIYQ 357


>gi|125717741|ref|YP_001034874.1| permease, putative [Streptococcus sanguinis SK36]
 gi|125497658|gb|ABN44324.1| Conserved permease, putative [Streptococcus sanguinis SK36]
 gi|325689947|gb|EGD31951.1| permease [Streptococcus sanguinis SK115]
 gi|328945949|gb|EGG40096.1| permease [Streptococcus sanguinis SK1087]
          Length = 392

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 114/346 (32%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      I  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITIVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +              ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADKFIDDVVTKYISADFKPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  +++     S    I +        M   LF+  RDG ++   +       
Sbjct: 161 DWASNFSSRAVNWAGNLISTTSQIVVAII----IMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F A + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRASFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   +E  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|325130277|gb|EGC53045.1| putative membrane protein [Neisseria meningitidis OX99.30304]
 gi|325136295|gb|EGC58903.1| putative membrane protein [Neisseria meningitidis M0579]
 gi|325142409|gb|EGC64815.1| putative membrane protein [Neisseria meningitidis 961-5945]
          Length = 344

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 5   AAFAALVWLIFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 63

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 64  LALLLIIVPMLVGQFNNLASRLPQLISFMQNTL-----LPWLKNTIGGYMEIDQASIIAW 118

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 119 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 178

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 179 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 238

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 239 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 298

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 299 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 335


>gi|324992095|gb|EGC24017.1| permease [Streptococcus sanguinis SK405]
 gi|324994189|gb|EGC26103.1| permease [Streptococcus sanguinis SK678]
 gi|327490609|gb|EGF22390.1| permease [Streptococcus sanguinis SK1058]
          Length = 365

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 115/348 (33%), Gaps = 7/348 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---SKKEESSTFLAVIA 66
            +   + +  I   L  L   F+P++   ++ F              K          +A
Sbjct: 17  ALALVLYIGNIWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLEKCRVPQKLQRSLA 76

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  + + ++ +  +    +  +   V+++        P         G + +S+L    
Sbjct: 77  LVLEVLILVLIMTGIVSIVVPTLTTAVNQLSETIGKVAPQVAKWLQQSGLLSSSQLKDLT 136

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                S  +     L  +    I      F  + +   L   F+             +  
Sbjct: 137 KQLQNSDIVNRAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV 196

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L           +  ++ +      +G  I A+  G+++  AY L G+P     GV
Sbjct: 197 ----LLPEKAVKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGV 252

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +++ IP   P S  A+    +   + + A            I    + P +VG  + 
Sbjct: 253 LAGVLSFIPYIGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVG 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LP L T    + G    GL+G+     + A+I  + +E ++  +E  E
Sbjct: 313 LPTLFTLAAALIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEERNE 360


>gi|256824791|ref|YP_003148751.1| putative permease [Kytococcus sedentarius DSM 20547]
 gi|256688184|gb|ACV05986.1| predicted permease [Kytococcus sedentarius DSM 20547]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 104/342 (30%), Gaps = 11/342 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +      ++   L      ++ ++ +  T  P+    +  +    +    +  + ++
Sbjct: 27  LGVLTAVGTAMAAQRLDFVITLLVVSVFLALTLNPLVEQLM-LRGLRRSGAVTVVFLWLL 85

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             F      +    + E   L+       Q  +             W  +         +
Sbjct: 86  VAFTGIGALVLPPIVDESTALLYDAPTYTQAFLE----------QDWVQQADRDFQLTDR 135

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               L +          +       G +          +++   +         +   +L
Sbjct: 136 FQNELQKRVSSGELAGQVTGGVLGAGRVLATGAFGAFTVLVLTLYLLATLPQTKRAGYAL 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    +++S  + + +     G  ++A   GL       + G+P    L V+   +
Sbjct: 196 VPASRRERVEELSEKIMRRVGGYAAGQFLVATINGLCSWVMMTILGIPYAAVLAVLVGFL 255

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP         V   + +  ++  A  +  +  I   + +  + P ++   + +P   
Sbjct: 256 GLIPLVGATIGAVVVGLIALSQSVEVALIVGAYYLIYQQVENYVIVPNIMKRTVSVPGAV 315

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           T    + G    G+LG  +     A + +I++E ++  +  +
Sbjct: 316 TVVAALIGGTLAGILGALLAIPTAAGLLLIYEEVLVPRQARR 357


>gi|254440895|ref|ZP_05054388.1| conserved domain protein, putative [Octadecabacter antarcticus 307]
 gi|198250973|gb|EDY75288.1| conserved domain protein, putative [Octadecabacter antarcticus 307]
          Length = 375

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 119/356 (33%), Gaps = 21/356 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   + +  L+ L     P +   +I +   PI          S     ++ T+S +  F
Sbjct: 14  IAAAVFVFLLWALGAVLTPFILGSVIAYFLDPIADRLQIW-GLSRVMATIVITLSGILTF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +  L +    + ++ +L+S + +  Q        L +   G +               +
Sbjct: 73  FLLFLLVVPTLIGQLGQLISTIGVIIQDLPQTWTSLKEWLSGRF---PNLDLDGTFMLDQ 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + S      +    +           ++  + ++ + +  F+   D   +  Q+D+L   
Sbjct: 130 MTSLGNAVQSRGGDLVAALLSSAQGIINVVVLLVIVPVVTFYMLLDWDRMVAQVDNLLPL 189

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + ++R + + + S   G   + +  G     A  +AG+   + +G I  +++ I
Sbjct: 190 DHQETVRDLARQIDRTLASFIRGQGTVCLILGTYYAIALMIAGLNFGLIVGFIAGLISFI 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNAT-----------------CLFLWGAIELFIVDKTLR 297
           P    +    ++I L +                          +    A   F     L 
Sbjct: 250 PYIGALVGGVLAIGLALFQWWGGTAVIDGEIVQHGINWLRIGIVAGVFAFGQFFEGNILT 309

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P LVG  + L  +     L      +G +G+ +   + A+I V+ +  I   K  +
Sbjct: 310 PKLVGSSVGLHPVWLILALSVFGSLLGFVGMLVAVPVAAVIGVVTRFLIAEYKSGQ 365


>gi|257899624|ref|ZP_05679277.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|293570808|ref|ZP_06681855.1| transport protein [Enterococcus faecium E980]
 gi|257837536|gb|EEV62610.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|291609076|gb|EFF38351.1| transport protein [Enterococcus faecium E980]
          Length = 379

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 115/324 (35%), Gaps = 7/324 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    L  L   F P+L A  I +   PI       +     F  ++  + V+ L ++ +
Sbjct: 33  IFSPILKMLSAIFLPLLVAGFIYYMFDPIVVFLEKHR-IPRVFGFLLTFLVVIILVVLTV 91

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    + +  +L   + +           L+         E    +L    +   LS 
Sbjct: 92  MNVVPQLVEQTIQLTQSLPIYADETSKWLNELAQR------EEFKNFNLEEQLASANLSL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + L    +  +    ++     + + + +  +   L F ++DG      L          
Sbjct: 146 SNLFNIILVSLSASVTKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRK 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++  + + + + +      + A+  G++   A  +   P  + L VI  I  +IP   
Sbjct: 206 ELRQTVKELNETLSAYISSTILDALIIGVMSFLAMRIFNQPYSLLLAVICGITNIIPYVG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +I + +  + F A  + L   +   +    ++P L G  + +  L     L+G
Sbjct: 266 PFIGAVPAIIVGLFISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIG 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
                G+LG+ I   + A+I  I 
Sbjct: 326 AGSVAGILGMLICIPVYAVIKTII 349


>gi|330966589|gb|EGH66849.1| permease [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 123/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDTRRWFWIGGLALLIAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   + +  LL L      ++  L           +   +  +             
Sbjct: 60  AVFGLFTLVLMTLLLVLVPMLAKQLFRLYELAP----QILDWLQHSAMPWVQAKFGLADG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I        + +  +   A+  G+  + +  +++ + +  F+  RD   +
Sbjct: 116 FWKFDKIKAAISEHMGQAGDIVSIVLSQATASGLALIGWLTNLVLIPVVCFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++  L      +   K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 MGKVRGLLPRQRESQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +       V+      G+++    +F    I   +    L P LV
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIFAVFMIGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K ++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKSSE 347


>gi|325689380|gb|EGD31385.1| permease [Streptococcus sanguinis SK115]
          Length = 360

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 111/337 (32%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      +     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----MLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|315606358|ref|ZP_07881374.1| membrane protein [Prevotella buccae ATCC 33574]
 gi|315252049|gb|EFU32022.1| membrane protein [Prevotella buccae ATCC 33574]
          Length = 387

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 128/364 (35%), Gaps = 17/364 (4%)

Query: 1   MRETMLNPQGIMRWM----IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW+    ++  +L  + +L G   P   A +  +  +PI      +  
Sbjct: 1   MNEQKITFDKLVRWVGIGALILAVLYLVNYLSGALLPFFIAWLFAYLLYPIVKFIQYRLH 60

Query: 57  ES-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   ++  + V+ +    +  +    + + ++L                  + I  
Sbjct: 61  VKVRALAIIVTMILVISVIAGVIYLIIPPMIEQFEKLGEVTTKWLHTTTHTNNLTTYIQE 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            + A++   +     +       +      +  +  F  +   + +   ++ +  ++ +F
Sbjct: 121 WLQANQSEIEKFFKSRD-----FSDAIKTAMPRLFSFVGQTASVVMS-IIASMITLLYMF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   ++Q    +       +W ++ + V + + +   G  ++A+  G++    + +
Sbjct: 175 FILLDYEHLTQNWIRIFPQKNRPFWHELMQDVERELNNYIRGQGLVALCMGIMFCIGFTI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G P  + LG++  I+ ++P     +    +   ++K         +++G   +  +   
Sbjct: 235 IGFPMAIGLGILIGILDLVPYLHTFALIPTAFLAMLKAADTGQNFWWVFGLAVIVFIVVQ 294

Query: 293 ---DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              D    P ++G  + L        L      +G +GL I   L  LI   W+  +   
Sbjct: 295 IITDFITTPKIMGKAMGLNPAILLLSLSVWGTLLGFIGLIIALPLTTLIIAYWQRYVTKE 354

Query: 350 KENK 353
              K
Sbjct: 355 HAPK 358


>gi|157693145|ref|YP_001487607.1| hypothetical protein BPUM_2381 [Bacillus pumilus SAFR-032]
 gi|157681903|gb|ABV63047.1| hypothetical protein BPUM_2381 [Bacillus pumilus SAFR-032]
          Length = 354

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 115/328 (35%), Gaps = 11/328 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               LK    P+L A+ I +  +PI     +      T   ++  V       + +    
Sbjct: 35  IFLLLKAVLIPLLIAIFISYLLYPIVERLHA-GGLPRTVSLLLIYVLFFGGIGLAVYKGA 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++ EL  ++ +  +        +         S            L + SET+  
Sbjct: 94  PVMIKQLNELSEQIPVLAETYNGALSHIHHHT-----SHWPDGLHDRLDRLIVQSETYAA 148

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 I         + LDY L    +   +F+  +D  ++ +    L    F      
Sbjct: 149 NGAERMILSC-----KVLLDYALVAALIPFLVFYMVKDMNTMKRAAWYLTPPSFRKRGHA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + + +   G  ++    G       WL  +P  + LG++     +IP   PI  
Sbjct: 204 FVKAVDESLGNYIRGQLLVCSFIGGAATIVLWLFHIPYPLVLGMLIGATNVIPYFGPIIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++++    ++ +   + +  A+  F+    L P +VG  + +  +     L+ G   
Sbjct: 264 AIPAVFIAFTISVKSVIIVLITVAVLQFLESNVLSPIIVGRSLHMHPVVIMLVLLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            GL+G+ +     A+I VI  + I+  +
Sbjct: 324 FGLIGMILAVPTAAIIRVIIVQYILMRR 351


>gi|116332976|ref|YP_794503.1| permease [Lactobacillus brevis ATCC 367]
 gi|116098323|gb|ABJ63472.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 390

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 119/333 (35%), Gaps = 5/333 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++     F+      V+ A I+ +   P+      +          IA ++   + ++  
Sbjct: 46  LLAPVWQFIGIAMPAVVVAGILFYVLDPLVHLMERRLHLRQGLAIAIAMIATAAIIVIIF 105

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L L  +   +   ++S +       +     L+          L  K+L+          
Sbjct: 106 LNLIPFLTKQTTGIISALPQFANDMLHNLNHLNQQHHW-----LSNKNLADINERVSTYF 160

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           +    N +               D+ ++II   + LFF  +DG      +  +    + +
Sbjct: 161 SKRGLNLLTGTLSSLGNVVTTVSDWIITIITAPLVLFFMLKDGTRFPHYISQVVPTAYRS 220

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +  +   +   + S   G   +A+   ++  + Y + G+   + +G++   + +IP   
Sbjct: 221 RFVVMLDQMNVKVSSYVRGQLTVALCVLIIFTTGYSIIGLRYALLIGLLAGPLNLIPYFG 280

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                  ++ + +  +      + +   IE  +  + L P ++G  + +  +   F L+ 
Sbjct: 281 SAIALVPALIMGVVTSPSMLLGVVIVYLIEWVLETQVLSPLIMGNSLAMHPITIVFVLLA 340

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G +  GL+G+  G    A++ V+   +    +E
Sbjct: 341 GGKMFGLVGVIFGVPGFAVLKVLATTAFQWYQE 373


>gi|325204203|gb|ADY99656.1| putative membrane protein [Neisseria meningitidis M01-240355]
          Length = 344

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 5   AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 63

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 64  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 118

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 119 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 178

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 179 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 238

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 239 PYLGAFTGLLLATVAALLQFGSWNGILAVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 298

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 299 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 335


>gi|221635410|ref|YP_002523286.1| hypothetical protein trd_A0004 [Thermomicrobium roseum DSM 5159]
 gi|221157285|gb|ACM06403.1| protein of unknown function [Thermomicrobium roseum DSM 5159]
          Length = 487

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 115/344 (33%), Gaps = 17/344 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +L  L     P + A +  +   P+      +       + ++  + ++ L ++  L 
Sbjct: 25  GWALLHLAHILTPFIVAAVFAYLVHPLVDWLERRLRLPRIAVVLVLYLVLIGLLVLGGLL 84

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      + + L + V    +          ++  G  A +             +     
Sbjct: 85  LAPSLAQQAQALATTVPRVIETIEQRLARAPELRFGELAID---------TRGLLDRLDA 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +  +   R A    +  ++  +      +  F+    G ++  +L +L         
Sbjct: 136 AAQSLAERFSREAVPLVLATVEALIKSFVFFLVSFYGLLQGRTLVARLRALAPRRHQKTV 195

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +I   V    R+      ++          A  +  V   +AL + T ++ +IP   P 
Sbjct: 196 SRILGQVDATFRAYIRAQLVLFAIMATATYIALTILEVKYRLALAIATGLLELIPFIGPW 255

Query: 261 SFTAVSIYLLIKGNIFNATC--------LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +  A+++ + +                 + L   +   + D  + P LVG  ++L  +  
Sbjct: 256 TAGAIAVSVALTQGTAPFGWSSLQLAVVVALVYLVLRLLEDHFVIPQLVGHFVRLHPVVV 315

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            FG++ G    G+LGL +   ++A + ++    +  ++    + 
Sbjct: 316 LFGILAGASVAGILGLLLAVPVLAALKIVVLTVLEELRHPPPRQ 359


>gi|83716829|ref|YP_439890.1| hypothetical protein BTH_II1696 [Burkholderia thailandensis E264]
 gi|83650654|gb|ABC34718.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 391

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T ++  L +VP+    
Sbjct: 70  WVIRDFIPAIAWAGVVAIALWPALRRIDALPAFHGRATLVAAALTAAIALLVVVPVAAGL 129

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + + +EL+  +    Q GIP+P  LS +P G   +  W +      +  +   + +K
Sbjct: 130 VEAIEQSRELLGWLHRVEQTGIPMPDALSHLPFGSQQASAWWQA---HLAQPLHPASAVK 186

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG   +   +   FM++ LF  +R G  +S  L +     F      
Sbjct: 187 GVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGALLTGVRRAFGDSGAA 246

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ F
Sbjct: 247 LLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLVF 306

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 307 CGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAET 366

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 367 FGLLGLFVGPALMTVLTVLWAEWV 390


>gi|289450334|ref|YP_003475067.1| hypothetical protein HMPREF0868_0750 [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184881|gb|ADC91306.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 467

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/386 (14%), Positives = 113/386 (29%), Gaps = 32/386 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY--------FLKGFFA---PVLSALIIGFTSWPIYS 49
           M  + +  + ++  +   I+             FL+       PV   LI+ F       
Sbjct: 1   MNISRITFRRLLVLISFSILFYVCVQNIGSVVDFLRKVIIIVRPVALGLILAFILNVPMK 60

Query: 50  SFISKK--------------------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +                                 ++A   V  +  V  LF+       +
Sbjct: 61  AAEKYLFEKPLCLHDTTKPRLMKLAAVLKRPLCLLLALCLVFAMMAVVALFVIPVVAETI 120

Query: 90  KELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
            EL+S +    +        L+ + P  +   E             +          +  
Sbjct: 121 SELISGIPAFAKRLEFKVNELATNNPRIVETLETLQIDWRELTEQAVGLMRTQAAGLLKH 180

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I    S        + ++++  I  L         + + L +L           + ++  
Sbjct: 181 ILSAGSDLVSGLTTFLVALVLAIYILSSKENLQRQMLKLLRALASDKRYDSILSVFKLAN 240

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
               +   G  + A   GL       +  +P    +GV+  I AMIP        AV   
Sbjct: 241 ATFSAYVSGQFLEACLLGLATYIGMTILKLPFSGLIGVVVTIFAMIPIVGSFISVAVGTL 300

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L +  +   A   F++  +   I    + P +VG  +KL  L     +  G    G+ G+
Sbjct: 301 LTVIEDPGKALIFFIFFIVLQQIEGNFIYPHVVGKSVKLSGLWVLVAISIGGSLGGIAGI 360

Query: 329 FIGPVLMALIAVIWKESIMAIKENKE 354
            +     +++  +  + +      KE
Sbjct: 361 LVSIPTFSVLYSLIGQWVNRCLLRKE 386


>gi|253688831|ref|YP_003018021.1| hypothetical protein PC1_2454 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755409|gb|ACT13485.1| protein of unknown function UPF0118 [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 395

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 138/355 (38%), Gaps = 6/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+   F +      +   ++
Sbjct: 38  LARILFSLAFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVIV 97

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T+ ++ LFIVP+  L    +     L+S          P   WL+ IP  G      W 
Sbjct: 98  MTLLLILLFIVPIGVLVSSVVDNSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQ 157

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    S               ++   A+  G     + +    M+I     Y  G ++
Sbjct: 158 ALLQSGGSGLFAKVQPYFGKTATWLVAQAAHVGR----FLMHCSLMLIFSALLYYKGEAV 213

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P    L
Sbjct: 214 AKAVRHFAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLL 273

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G         I+L   G+    T L +W  +    +D  +RP L+   
Sbjct: 274 TVLMFLCCLAQLGPLPVLIPAIIWLYWTGDNTWGTILLVWSCVV-GTIDNIIRPVLIRMG 332

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             LP L    G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 333 ADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 387


>gi|254511545|ref|ZP_05123612.1| membrane protein [Rhodobacteraceae bacterium KLH11]
 gi|221535256|gb|EEE38244.1| membrane protein [Rhodobacteraceae bacterium KLH11]
          Length = 357

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 111/342 (32%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I +V LY L     P +    I +   PI      K   S      I T+  +  F
Sbjct: 14  ITAAIFVVLLYLLGDVLLPFVIGGAIAYFLDPIADRME-KLGLSRMAATGIITIVGVLGF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +L +    + ++ +L+  +    +                                 
Sbjct: 73  VLMILMVVPALITQLLDLIDTLPSLFKELRTFVEK----------QFPALLDRESNTHQM 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           ++S      +    + +         ++  + ++ + +   +   D   +  ++  L   
Sbjct: 123 LVSFGETLKSKTGDVLQTVLASLGSAINVVVLLVIVPVVAVYLLMDWDRMIARIGELLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K+++  +  V+ S   GM  + +  G     A  L G+   + +G I  ++  I
Sbjct: 183 DHAPTIKRLAGEIDAVLASFVRGMGTVCLILGTYYAVALMLVGLQFGLIVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +    ++I L      G+  +   +    AI        L P LVG  + L  + 
Sbjct: 243 PYLGALIGGTLAIGLALFQFWGDWAHIGLVAGIFAIGQVTEGNFLTPKLVGSSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + V+ + +      ++
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVLARFATEQYLNSR 344


>gi|56807948|ref|ZP_00365766.1| COG0628: Predicted permease [Streptococcus pyogenes M49 591]
          Length = 393

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 114/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+ +  + F      P++ + I+ + + P+    I+    + T    I    +  LF+
Sbjct: 43  ISFLFMPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPNRTTSIFIVFGLITLLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L+H     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQAMLTHTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSGHMKNGLVNVLPLK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMVRVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYAITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      + + +    F    + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVVIMAMVQGPFMLFKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     K+
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVIKELFDWYKK 373


>gi|317499359|ref|ZP_07957627.1| ATP synthase F0 [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316893328|gb|EFV15542.1| ATP synthase F0 [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 375

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 117/342 (34%), Gaps = 6/342 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCL 73
           ++   + ++     P +    + F      S F  K      +   +   ++A VS++ +
Sbjct: 30  VVFSGISYVSSVVFPFILGSCVAFIINVPMSFFERKLFYKLKKGKRSLSLIMAIVSIVGV 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHLSHPQS 132
            ++    +    +  + +L + +    +    +    S + P         T        
Sbjct: 90  ILLVSRLIIPELVDTIFKLSNNIPEYVKEIQALLEKTSMNKPMVHKYVNQITFDWDKISG 149

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I       T+ ++      +      + + L  +F + AL    +    + + L +  
Sbjct: 150 ELITFLQDGATSMLNSTVSAITDVVQFIVSFALGFVFALNALLQKEKLSMQVKKVLVAFL 209

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                 Y  ++ R+      S   G  + A+  G ++ ++  L G+P  V + V   +M+
Sbjct: 210 PERVAKYIVRVGRLSNNAFSSFLSGQCLEAVILGCLIFASMKLLGLPYAVLIAVFIGVMS 269

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP         V + L+   +   A    +   +        + P +VG  + LP +  
Sbjct: 270 LIPIIGGFIGCWVGVLLIFMVDWKQAIIFIIMFVVVQQFEGNVIYPHVVGNSVGLPAIWV 329

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +  G    G++G+       +++  ++ E +    + K 
Sbjct: 330 LVAVTIGGNIAGIVGMIFSIPFCSVLYQLFSEIVNKQIKKKN 371


>gi|254711673|ref|ZP_05173484.1| hypothetical protein BpinB_15754 [Brucella pinnipedialis B2/94]
          Length = 352

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 144/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G+  G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMNGGVTFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|16799980|ref|NP_470248.1| hypothetical protein lin0908 [Listeria innocua Clip11262]
 gi|16413357|emb|CAC96140.1| lin0908 [Listeria innocua Clip11262]
 gi|313619742|gb|EFR91354.1| permease [Listeria innocua FSL S4-378]
 gi|313624438|gb|EFR94449.1| permease [Listeria innocua FSL J1-023]
          Length = 378

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 121/345 (35%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    ++FI+L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAVLFILLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVILIFIAFIALVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQSLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +    S   +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDIDMKQELSKLNISLPKIMSVVVDGVASSFGAIISFVSGFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +              K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRTEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPVQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|229030594|ref|ZP_04186629.1| hypothetical protein bcere0028_26620 [Bacillus cereus AH1271]
 gi|228730761|gb|EEL81706.1| hypothetical protein bcere0028_26620 [Bacillus cereus AH1271]
          Length = 302

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 104/299 (34%), Gaps = 4/299 (1%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           K+       ++  + ++ L  V +  +      ++ +LV  +    + G    + LS   
Sbjct: 4   KKVPRNLAILLLYLFIITLTAVGVGVVVPTISQQLMDLVKNMPGYIKEGKLYIQDLSHHR 63

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              W S                +      +  + I   A+    I  +  L I  +   L
Sbjct: 64  LFEWLSTQNY----VSIETIEKNAIEYLKDIPNTITSSATALFGIITNVALVIFTVPFIL 119

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+ ++DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y 
Sbjct: 120 FYMFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYL 179

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P    LG+I A   +IP   P    A ++ + +  +   A  + +   I       
Sbjct: 180 IIDLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESN 239

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + P ++   + +  L     ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 240 IISPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 298


>gi|160933907|ref|ZP_02081294.1| hypothetical protein CLOLEP_02769 [Clostridium leptum DSM 753]
 gi|156866580|gb|EDO59952.1| hypothetical protein CLOLEP_02769 [Clostridium leptum DSM 753]
          Length = 420

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 114/334 (34%), Gaps = 12/334 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISK-----KEESSTFLAVIATVS 69
            I  ++     FF  +  A ++           ++    +     K+        ++ ++
Sbjct: 45  FITGAISLAAPFFIGIAIAFVVNVLLKFYEEKAFAFLNKRNGRIWKKIRRGVCIFLSFLT 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +    +LF+    +  +K L             + +  + +      ++     L  
Sbjct: 105 FVLVIGGIILFVVPELVNSVKVLTDNAPSYIN---RLMQETTKLLEKWNVTQEQINALKL 161

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S  +   T + TN +  +               +S IF +  L    +   ++ + + 
Sbjct: 162 DWSSILTQATQVTTNFMGSVFNITVNVANGIFIMAMSFIFCMYMLVNKEKLTTNLKRVMY 221

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +   +        ++ +  K+  +   G    A     ++     +  +P  + +  I A
Sbjct: 222 AYLPNRVAKRTIDVAILSNKIFSNFVRGQLTEACIWFFLIYLGMTVLRLPYALLISAIVA 281

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++IP   P      + ++L+  N ++     ++  I   I    + P +VG  I LP 
Sbjct: 282 LCSLIPIIGPYISMFTAGFILLLVNPWHTLTYLIFFLILQQIEGNLIYPRVVGTSIGLPG 341

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +     ++      G++G+ +G    ++I  + +
Sbjct: 342 IWVLLAIILCGNLFGMVGILLGIPTFSVIYTLLR 375


>gi|91782652|ref|YP_557858.1| hypothetical protein Bxe_A3174 [Burkholderia xenovorans LB400]
 gi|91686606|gb|ABE29806.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 371

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 152/354 (42%), Gaps = 5/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   L  +    + ++ ++  SL  L  F   +L   I+ ++SW +Y    +       
Sbjct: 1   MKSDQLIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGLYRRLTAALGGRRK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWA 119
           + A +  + ++ + + P ++  +     + ++V+ V    +     +P W++ IP    +
Sbjct: 61  WAATLIVLIILIVVLGPFVYAGFAFGARVHDIVALVQRLFEAGLPDLPPWVARIPLVGSS 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E + + L+   S  I     L      +I   A             +   I+  FFFY 
Sbjct: 121 IEAFWERLTSSNSELIAQLRTLAAPAGKWILAAAIAVT----HGLGLLALSIVLAFFFYT 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G   +  L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP
Sbjct: 177 GGEGAAAWLNAGMRRVAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   LG+ T  +++IPGG  + +   +I+L   G    A  L +WG + + + D  ++P 
Sbjct: 237 APALLGLATFFLSVIPGGPVVVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKPI 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+G    +P +    G++GG    G LG+FIGP L+A+   +  +  +     +
Sbjct: 297 LIGKNSDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDWTIGAPAAR 350


>gi|311279418|ref|YP_003941649.1| hypothetical protein Entcl_2111 [Enterobacter cloacae SCF1]
 gi|308748613|gb|ADO48365.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 374

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 131/357 (36%), Gaps = 6/357 (1%)

Query: 3   ETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
                PQ ++  + +  II+  L+ ++ F      A  I   +WP+              
Sbjct: 6   RPRDIPQILLSVLFLTLIIVACLWIVQPFILGFAWASTIVIATWPVLIRLQRILFGKRAL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++ T+ +  LF++P+  L    +     LV  +         +P   S    G     
Sbjct: 66  AVLVMTLLLFLLFVIPIALLVNSLVDGSLPLVHAITSGELTPPDLPWLNSIPLIGAKLYG 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L    +  +            +    A+  G     + L    M++     Y  G
Sbjct: 126 AWHGLLDMGGAAIMTKVKPYIGTTTTWFVGQAAHIGR----FMLHCGLMLLFSALLYWQG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP  
Sbjct: 182 EKVAWGVRYFATRLAAKRGDAAVLLAGQAIRAVALGVVVTALVQAVLGGIGLAISGVPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+     ++  G  I      I+L   G+    T L +W  +    +D  +RP L+
Sbjct: 242 TLLTVVMIFSCLVQLGPLIVLVPSIIWLYWSGDTTWGTVLLVWSCVV-GTMDNFIRPVLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    +    
Sbjct: 301 RMGADLPMILIISGVIGGLIAFGMIGLFIGPVLLAVTWRLFDTWMREVPPPSDNPEE 357


>gi|295101910|emb|CBK99455.1| Predicted permease [Faecalibacterium prausnitzii L2-6]
          Length = 426

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 103/345 (29%), Gaps = 15/345 (4%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKE---------ESSTFLAVIATVSVMCLFIVPLL 79
           G   P +   +I +   P+ ++                ++        +  + +    ++
Sbjct: 47  GILMPFIYGAVIAYLLKPVCNTIEGFLHRIFPEKLHSMANMLAIAATLLFGVLVVYALVM 106

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  +  L      +    +                  +        +      T
Sbjct: 107 MVVPQLITSVTSLYYTAQTSITRFMQWVNTQEVFLDNETLMGYFNDAYDVIVNNLTALRT 166

Query: 140 FLKTNG--IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            L  +   I  I        M  + +  +++  +I   +        ++Q   +   +  
Sbjct: 167 TLLPSLQNIQGILSGVGVGVMNVVTWFKNLLIGLIVAVYLLASRKKFAKQAKMILYSVVK 226

Query: 198 AYWKKISRI----VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +W ++ +       K+      G  + +   G++   A  +   PS + + VI  +  +
Sbjct: 227 PHWAQLIQEEVLYADKMFGGFINGKIMDSAIIGVLCYFACIIFKFPSALLVSVIIGVTNV 286

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      +  L++  +   A    L+  +   +    + P ++G    L      
Sbjct: 287 IPFFGPFIGAVPATLLILIQSPIKALWFVLFVLVLQQLDGNVIGPKILGNTTGLSSFWVL 346

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           F ++      G  G+  G  L A+I  + K+ +        ++  
Sbjct: 347 FSILLFGGLWGFAGMIAGVPLFAVIYDVIKKLVFHGLRRNGQLDQ 391


>gi|89098587|ref|ZP_01171470.1| hypothetical protein B14911_10257 [Bacillus sp. NRRL B-14911]
 gi|89086832|gb|EAR65950.1| hypothetical protein B14911_10257 [Bacillus sp. NRRL B-14911]
          Length = 361

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 119/353 (33%), Gaps = 19/353 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
           M     I+  +++F++    +F+  F       F P+L + ++ +   P+          
Sbjct: 9   MYITGAILVLVVIFLLGKIDWFIWPFRKLVATIFFPILISGLLYYILRPVIRWLSGYM-- 66

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T   +I   +++ +      F       ++ ++        +      + + D     
Sbjct: 67  PKTASILIVFGTLIGIGTGIFYFGGSLIAEQITQISDSFPDKMEDLTSETKEMVDENDFG 126

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           + S                       + I+ +    +            +I +   LF+F
Sbjct: 127 FLSY----------EEIEQKVLSYSQSFINTVGSNLTGIISAITSIATVLIVVPFILFYF 176

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D   +  +L             +I   + K + +  +G  IIA  +G+++   Y + G
Sbjct: 177 SKDDEKLRPKLLKWIPDEHKIEGNRILLDIDKTLSTYIIGQFIIAFADGVLMYIGYLIIG 236

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + L +    + ++P   P+     +I++ +    F    + +       +    + 
Sbjct: 237 LDYALVLALFATFLTVVPFLGPLLGIIPAIFVGLMQEPFMVIKILIVLVAVQQLEGNLIT 296

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           P ++G  + +  L     L+      G +G+ +     +++ VI ++     +
Sbjct: 297 PQVMGKRLNIHPLTVILVLLVAGSLYGFIGILVAIPFYSVVKVIVRDFWKFYR 349


>gi|223932565|ref|ZP_03624566.1| protein of unknown function UPF0118 [Streptococcus suis 89/1591]
 gi|302024193|ref|ZP_07249404.1| membrane protein [Streptococcus suis 05HAS68]
 gi|330833141|ref|YP_004401966.1| hypothetical protein SSUST3_1355 [Streptococcus suis ST3]
 gi|223898836|gb|EEF65196.1| protein of unknown function UPF0118 [Streptococcus suis 89/1591]
 gi|329307364|gb|AEB81780.1| protein of unknown function UPF0118 [Streptococcus suis ST3]
          Length = 388

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 113/337 (33%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      FL+    P++   ++ +   P+        + S T    I  V +  L I
Sbjct: 42  ISFLFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKH-KISRTVGISILFVLISLLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      +    Q        L              + L+      +
Sbjct: 101 WGLAVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIV 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  ++ +++     S    I +        M   LF+  RDG  +++ +       
Sbjct: 161 AYAQKFSSSAVNWASNLISTASQIIVAIL----IMPFILFYLLRDGQYLNKHITQYLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP
Sbjct: 217 WREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+   +  G+LG+ +G  + A I V+ K +    K +
Sbjct: 337 LLTAGQMYGVLGVLLGIPIYASIKVLVKAAFEWYKAH 373


>gi|311278603|ref|YP_003940834.1| hypothetical protein Entcl_1284 [Enterobacter cloacae SCF1]
 gi|308747798|gb|ADO47550.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 349

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 111/355 (31%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +           +   S  +
Sbjct: 5   RRRFSDPEAIALLVILLAGFGILFFFSGLLAPLLVAIVLAYLLEWPTIRLE-RIGCSRRW 63

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 64  ATSIVLILFVGILLLMAFVVMPVAWQQGINLIRDMPGMLNKLSDFAATLPRRYPALMDAG 123

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 124 IIDAMADNMRNRMLTMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 175

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+     + L G+   
Sbjct: 176 EQMLNAVRRILP-RNRGLAGQVWKEMNQQITNYIRGKVLEMVVVGVATWIGFLLFGLNYS 234

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP       T     + L   G       LF    I   +    L P 
Sbjct: 235 LLLAVLVGLSVLIPYIGAFVVTIPVVCVALFQFGLGTEFWSLFAVYLIIQGLDGNLLVPV 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     +V      G  G+F    L  LI  +      +   ++ 
Sbjct: 295 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDSPAVDEP 349


>gi|282896491|ref|ZP_06304511.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
 gi|281198597|gb|EFA73478.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
          Length = 359

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 108/337 (32%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ L+     + +A+++  T   +                 ++ +  +
Sbjct: 7   IGLIALVVSLYILWQLREVLLLIFAAVVLATTLNRLA-RTCQNLGIKRGLAVFLSVMFFL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     +    + + +EL  +V    +                    +   +    +
Sbjct: 66  VGIVAFFWVIVPPFVHQFQELTLRVPQGFERVNTWIDEQRSHIPQELEPVIPDLNRLIAE 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         I+ +   +  F    L   L+I+ +++    F  +  +  +    L
Sbjct: 126 ----------AQPLINRVLGNSFAFVSGSLVLVLNILLVLVLTAMFLTNPPAYQKLFVRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    + I       +     G  I     GL+      + GV + +ALGV+  +M
Sbjct: 176 FPSFYRRRVEGILNQCEDSLERWLTGAFIAVCVVGLMSLIGLSILGVKAALALGVLAGLM 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ + +  + +    + +       +    + P ++   + L    
Sbjct: 236 NLIPNLGPTMSVVPAMAIALLDSPWKPIFVLILYFFIQQLESNFITPMVMAHQVSLLPAV 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +  V   G LGLF+   L  +  +  +E ++ 
Sbjct: 296 TLISQLFFVTFFGFLGLFLALPLTVVAKIWIQEVLIK 332


>gi|254230483|ref|ZP_04923858.1| putative permease [Vibrio sp. Ex25]
 gi|262393362|ref|YP_003285216.1| putative permease [Vibrio sp. Ex25]
 gi|151936989|gb|EDN55872.1| putative permease [Vibrio sp. Ex25]
 gi|262336956|gb|ACY50751.1| predicted permease [Vibrio sp. Ex25]
          Length = 361

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 143/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +P++  F  K  +     A
Sbjct: 6   KITSSHRVLMVALLAAAFACYLLVEPYINSIVMAFIISLLMFPVHEWFERKIPKHPNMAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++ V +  + ++PLLF+F   + +             +G I        +  G+     
Sbjct: 66  LLSCVVLTFIIVIPLLFVFAAIVQQGSVFSQNTYNWVTNGGIQDIFQHPFVIKGLAIVNE 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T+    +   +++      ++ ++   M+  LFF  RD  
Sbjct: 126 YLPFDKIEPKAIAEKIGQFATSFGSNLVAISAKILGDATNFLMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRILTEIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVVVGSIDNLLRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+   +  ++
Sbjct: 305 GSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLNQQDNS 361


>gi|330810817|ref|YP_004355279.1| hypothetical protein PSEBR_a3885 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378925|gb|AEA70275.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 353

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 145/348 (41%), Gaps = 4/348 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   ML  +     +++ + +  ++ L  F+  V  A+I+G    P+      K      
Sbjct: 1   MNRKMLQNKA-QMLLLVLVTIAFIWILLPFYGAVFWAVILGIVFAPMQRRLQLKFGWHRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++      +   I+P++ +    + E   L   +               D     +  
Sbjct: 60  VTSLFTLSICVVCAILPVIIISTLLVQEGAALYKSLESGELDIADYLARFKDALPPYFQH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L +   L+          G +F    A  FG     + +S   MI  LFFF RD
Sbjct: 120 LLDRFGLGNLNGLRDKIVKSAMQ-GSEFFATQAFSFGQGTFQFLVSFFVMIYLLFFFLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++ +    L     +++     +V+R+T  G  ++AI +G + G  +W+ G+P+
Sbjct: 179 GAELVRKVRTAVP-LAEHQKRRLQLKFNRVVRATVKGNLLVAISQGALGGLIFWILGIPT 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P     + +  V++Y L+ G I+    L L+G   + +VD  LRP 
Sbjct: 238 VLPWAVLMAFLSLLPAVGAGLVWAPVAVYFLLSGAIWQGVVLTLFGVFVIGLVDNFLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           LVG   K+P        +GG+   GL G  IGP++ AL    W   + 
Sbjct: 298 LVGKDTKMPDYMVLVSTLGGLAVFGLNGFVIGPLIAALFMSSWALFVE 345


>gi|330986708|gb|EGH84811.1| permease [Pseudomonas syringae pv. lachrymans str. M301315]
          Length = 357

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 121/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDTRRWFWIGGLALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   + +  LL L      ++  L                       G+       
Sbjct: 60  AVFGLFTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             ++  L          K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 IGKIRGLLPRQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +       V+      G+++    +     I   +    L P LV
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 347


>gi|253752195|ref|YP_003025336.1| hypothetical protein SSUSC84_1344 [Streptococcus suis SC84]
 gi|253754021|ref|YP_003027162.1| membrane protein [Streptococcus suis P1/7]
 gi|253755955|ref|YP_003029095.1| membrane protein [Streptococcus suis BM407]
 gi|251816484|emb|CAZ52120.1| putative membrane protein [Streptococcus suis SC84]
 gi|251818419|emb|CAZ56248.1| putative membrane protein [Streptococcus suis BM407]
 gi|251820267|emb|CAR46734.1| putative membrane protein [Streptococcus suis P1/7]
 gi|319758582|gb|ADV70524.1| hypothetical protein SSUJS14_1464 [Streptococcus suis JS14]
          Length = 388

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 113/337 (33%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      FL+    P++   ++ +   P+        + S T    I  V +  L I
Sbjct: 42  ISFLFRPIGSFLEIVLLPMILTGLLYYLLNPMVDWMEKH-KISRTVGISILFVLISLLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++      +    Q        L              + L+      +
Sbjct: 101 WGLAVAIPSIQEQVTSFAQNLPSNIQKIEGQVTGLLQDQRFEQFRPTALEMLNKVNDQIV 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  ++ +++     S    I +        M   LF+  RDG  +++ +       
Sbjct: 161 AYAQKFSSSAVNWASNLISTASQIIVAIL----IMPFILFYLLRDGQYLNKHITQYLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      +   V   + +   G   +AI   L+    + + G+   + LGV+   + +IP
Sbjct: 217 WREPIGTVLSDVNGQLSNYVRGQVTVAIIVALMFSVMFSIIGLSYPITLGVMAGFLNLIP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMIPAVILGLIAGPIMLIKVLVVFMIEQTIEGRFVTPLIIGSSLSIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+   +  G+LG+ +G  + A I V+ K +    K +
Sbjct: 337 LLTAGQMYGVLGVLLGIPIYASIKVLVKAAFEWYKAH 373


>gi|91778406|ref|YP_553614.1| hypothetical protein Bxe_B1702 [Burkholderia xenovorans LB400]
 gi|91691066|gb|ABE34264.1| putative membrane protein [Burkholderia xenovorans LB400]
          Length = 360

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 170/346 (49%), Gaps = 5/346 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTF 61
            +   +     + + ++L++L+ ++ F A V  A +I    WP+             +T 
Sbjct: 18  RLKKQKTASLALYIGLVLLALWVVRDFIAVVAWAGVIAIALWPLLRKVEGNRWFTGRTTL 77

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +A + T+ +  L ++P+       + E  +L        ++GIP+P ++  +P G+    
Sbjct: 78  IAAVLTLLIALLVVLPVGIGIAQALREAHDLNEWFKTVQENGIPLPDFVQHLPFGVQQIS 137

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W +        +  +   L +     +      FG   +       FM++ LF  ++ G
Sbjct: 138 TWWQANLTQPLRESAAMKGLHSPA---VVTLGRHFGARAVHAVTVFAFMLVTLFVIFQAG 194

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +S  L       F     ++ + +   +R T  G+ ++ +GEG +LG AY++ G+P  
Sbjct: 195 PRLSGALLKGMRRGFGDDGAQLLQRMAAAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHV 254

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L  +TAI AM+P  AP++F   +++LL +G++  A  L ++GA+ +F+ +  +RP L+
Sbjct: 255 ALLAFVTAIAAMLPFCAPLTFGIAALWLLSQGSVAAAIGLAVFGAVVVFVAEHFVRPVLI 314

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + + 
Sbjct: 315 GNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLVQ 360


>gi|172058148|ref|YP_001814608.1| hypothetical protein Exig_2139 [Exiguobacterium sibiricum 255-15]
 gi|171990669|gb|ACB61591.1| protein of unknown function UPF0118 [Exiguobacterium sibiricum
           255-15]
          Length = 382

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 119/360 (33%), Gaps = 12/360 (3%)

Query: 9   QGIMRWMIMFIILVSL-----------YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           + ++  + +F+++                L   F P++ A I  + +  I  +   + + 
Sbjct: 10  KALLWILTIFLVIWVGTKISFLFQPIKVMLALIFPPLIIAGIFYYFTLGIVDTLQKRVK- 68

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 +I  +  + +  + +  +    + ++ + V+ +             L D     
Sbjct: 69  KRGLAVLIVLLGFLGIITIAVASIGPILVDQVSDFVTSIPNLVVELRDQTLNLRDQLMNN 128

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                W    +          T         +         +     L ++ +   L + 
Sbjct: 129 RFISNWVHENTAMFDSWTNEATSYIGTLFKSVSTSVGTIFGVISSTVLIVVLVPFILVYM 188

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             DG+     +  L    +    +KI   +   ++    G  I+++  GL+    ++++ 
Sbjct: 189 LLDGYKFPNSVVKLLPKSYETETRKILHDMHVTVKHYVNGQVIVSLCVGLMSLIGFFISD 248

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + L +   +  +IP   P      ++ +    +   A    +   +   I    + 
Sbjct: 249 IQYALLLALFCTVTNIIPYLGPYIGAVPAVIVGFIDDPIKALYAIITIVVAQQIESNLIS 308

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P++ G  +K+  L     L+   +  G++G+ +     A+  V+ +      +  ++K+ 
Sbjct: 309 PYVQGKTLKVHPLTIIIVLLVAGKIGGIIGVILAVPTYAVTKVVVQNIARIYRLRQQKLD 368


>gi|327469594|gb|EGF15063.1| permease [Streptococcus sanguinis SK330]
          Length = 392

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 116/346 (33%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      I  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITIVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +              ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADRFIDDVVTKHISADFKPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  +++    A           ++II M   LF+  RDG ++   +       
Sbjct: 161 DWASNFSSRAVNW----AGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F A + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRASFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   IE  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIIEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|325694203|gb|EGD36119.1| permease [Streptococcus sanguinis SK150]
          Length = 392

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 116/346 (33%), Gaps = 6/346 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I FI    + FL     PV+ A ++ +   PI        + +      I  V +  L I
Sbjct: 42  ISFIFSPVIEFLGVIMLPVILAGLLYYLLNPIVDWMEKH-KINRLVAITIVFVLIAFLII 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L         ++   V  V    +        +              ++ S+  S   
Sbjct: 101 WGLAVAIPSLQHQVMAFVRNVPAYLKQADKFIDDVVTKYISADFKPQIEEYTSNLSSQIT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +   +  +++    A           ++II M   LF+  RDG ++   +       
Sbjct: 161 DWASNFSSRAVNW----AGNLISTTSQIIVAIIIMPFILFYLLRDGKNLKGYVTQFLPTK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F A + ++   +   + +   G   +AI   L+    + + G+   V LGVI  ++ ++P
Sbjct: 217 FRASFGQVMTDINSQLANYVRGQVTVAIIVALMFIVFFKIIGLRYGVTLGVIAGVLNLVP 276

Query: 256 GGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                          LI G       + +   +E  I  + + P ++G  + +  +   F
Sbjct: 277 YLGSFLAMLPALAIGLIAGGPVMLAKVIVVFIVEQTIEGRFVSPLVLGSQLSIHPITILF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L+      G+ G+F+G    A   V         ++      ++F
Sbjct: 337 VLLTSGTMFGIWGVFLGIPAYASAKVAIAAIFKWYQKVSGLYEADF 382


>gi|315613038|ref|ZP_07887949.1| membrane protein [Streptococcus sanguinis ATCC 49296]
 gi|315315148|gb|EFU63189.1| membrane protein [Streptococcus sanguinis ATCC 49296]
          Length = 369

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 108/337 (32%), Gaps = 6/337 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + P+ +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPVVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+            +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLTSLIISSQNIYSRLQDLIIDLSMNPVFQNID------IQKTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 143 YVDILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTVLKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLSSLLTNLNTTIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       +   +  +         +  I   I    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMVIANVFTDPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G++G+ +     ++   I K      + +KE
Sbjct: 323 LSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|148254442|ref|YP_001239027.1| hypothetical protein BBta_2998 [Bradyrhizobium sp. BTAi1]
 gi|146406615|gb|ABQ35121.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 359

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/343 (20%), Positives = 143/343 (41%), Gaps = 3/343 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  +++ I L   + L  F+  VL  L+      P++              A +  + 
Sbjct: 7   RVLLVLLVAITLTLGWILLPFYGAVLWGLVGAVVFAPLHRRLARSMHGRDGLAAAVVVLL 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + I+PL  +      +   + ++            + + +     W  +L  +    
Sbjct: 67  VVLIVIIPLSLIGAALAQQATGVYAQAQSGQLDIGQYFQKMMEALP-TWVVDLLNRFGLG 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +      + +   G   I   A   G    ++ +++  M+  LFF  RD  ++S+++ 
Sbjct: 126 SLAGLKDRLSAVLLRGSQMIAGQALNIGQGTFEFFVNLFLMLYLLFFLLRDQDALSERIA 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +            +      VIR+T  G  ++A+ +G + G  +W  G+ + +   V+ A
Sbjct: 186 TAIPLRTEQRNA-LLHKFTVVIRATVKGNLVVALAQGALGGLIFWFLGITAPLLWAVVMA 244

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++++P     + +  V++YLL  G I++   L  +GA+ + +VD  LRP LVG   K+P
Sbjct: 245 FLSLLPAVGAGLVWFPVALYLLATGAIWHGVILIAYGALVIGLVDNLLRPILVGQDTKMP 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   +GG+   GL G  IGP + A+   IW     A ++
Sbjct: 305 DYVVLISTLGGIEAFGLNGFIIGPAMAAMFIAIWSMFSDARRD 347


>gi|171911714|ref|ZP_02927184.1| hypothetical protein VspiD_11080 [Verrucomicrobium spinosum DSM
           4136]
          Length = 633

 Score =  130 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 101/359 (28%), Gaps = 32/359 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +R+    +++ +LYF +    P+  + ++ F   P+      +         VI T+ 
Sbjct: 10  VFLRFFSALLLVAALYFAQEVLVPLALSALLAFMINPLVKLLC-RCRLPRAMSVVIVTML 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  L       +      E+  L + +     +       + +   G   + L T     
Sbjct: 69  VFTLMGCVFWMVG----KELHHLANSLPNYRHNIQERVSTVRNASEGGTIARLRTMVADI 124

Query: 130 PQSLKILSETFLKTNGI-------------------------DFIPRFASRFGMIFLDYC 164
             S   +S    K                                 +  +       +  
Sbjct: 125 STSALDVSAGRQKQVSTPAVQPPAAPDNAASAPQPAPPPVEGGMASKILNASLSFLANGL 184

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
                +I+ + F       IS ++  L          +    +   I    L +  +   
Sbjct: 185 GVAAVVIVFVIFMLLRQEDISHRIVGLAGFSRLTTTTRAMDEIGGRISRYLLMLATVNSL 244

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLF 282
            GL+L       G+P  +  GV+ A+   IP   P       + + L +         + 
Sbjct: 245 YGLMLAIGLAFIGLPYVLLWGVLAALFRFIPYIGPWIVAVLPIGLSLAVFDGWTQPLMVA 304

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                   + +  L P L G  + +        +       G LGL +   L   I VI
Sbjct: 305 GLIIGLELLTNMVLEPLLYGHSVGVSDFALLVAITFWTWLWGGLGLVLATPLTVCIVVI 363


>gi|170702831|ref|ZP_02893681.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
 gi|170132267|gb|EDT00745.1| protein of unknown function UPF0118 [Burkholderia ambifaria
           IOP40-10]
          Length = 356

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 151/325 (46%), Gaps = 5/325 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + T  V  L I+P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIALWPLLKRFESERWFRNRPTLIATVITAGVSLLVILPVALAL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  +L   +     +GIP+P  ++ +P G      W +         + +   + 
Sbjct: 95  GQAISQEHDLRMWLQSIQDNGIPLPDVIARLPYGATQVTEWWQANLGHP---LHAGAAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +    F  +FG           FM++ LF   R G  +S  L       F     +
Sbjct: 152 GASGEKFIAFGRQFGTKLAHALFEFGFMLVTLFVILRAGHKLSGALLHGARRAFGPGGGE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  API F
Sbjct: 212 LIERMVAAVYGTVTGLVVVGLGEGAILGVAYALAGVPHAALLGLVTAVAAMLPFCAPIVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G    A  + + G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGATVWAVVVLVVGFVVVFVAEHFVRPVLIGSSTRLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            GL+GLF+GP LM ++ ++W E + 
Sbjct: 332 FGLIGLFVGPALMTVLTMLWAEWVA 356


>gi|293379019|ref|ZP_06625173.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|292642361|gb|EFF60517.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 334

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/311 (15%), Positives = 110/311 (35%), Gaps = 7/311 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P+L A  I +   PI       +        ++  + V+ L ++ ++ +    + +  +
Sbjct: 1   MPLLVAGFIYYMFDPIVVFLEKHR-IPRVLGFLLTFLVVIILVVLAVMNVVPQLVEQTIQ 59

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L   + +           L+         E    +L    +   LS + L    +  +  
Sbjct: 60  LTQSLPIYADETSKWLNELAQR------EEFKNFNLEEQLASANLSLSNLFNIILVSLSA 113

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             ++     + + + +  +   L F ++DG      L            ++  + + + +
Sbjct: 114 SVTKIISFMMQFFILLFTVPFILLFMFKDGHKFIDALSHFFPKAIRKELRQTVKELNETL 173

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            +      + A+  G++   A  +   P  + L VI  I  +IP   P      +I + +
Sbjct: 174 SAYISSTILDALIIGVMSFLAMRIFNQPYSLLLAVICGITNIIPYVGPFIGAVPAIIVGL 233

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             + F A  + L   +   +    ++P L G  + +  L     L+G     G+LG+ I 
Sbjct: 234 FISPFQALYMALSILVIQQLDGNLIKPLLFGKSMNIHPLTIILVLIGAGSVAGILGMLIC 293

Query: 332 PVLMALIAVIW 342
             + A+I  I 
Sbjct: 294 IPVYAVIKTII 304


>gi|238916532|ref|YP_002930049.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Eubacterium eligens ATCC 27750]
 gi|238871892|gb|ACR71602.1| phosphoribosylaminoimidazole-succinocarboxamide synthase
           [Eubacterium eligens ATCC 27750]
          Length = 390

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 114/355 (32%), Gaps = 14/355 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------------KKEESSTFLAVIA 66
           IL S+ +L G   P +   +I F       +                          ++ 
Sbjct: 34  ILDSISYLAGLVMPFIIGAVIAFVFNVPMKAIEKGLNRLFDKRCKKKHPRLIRVLAYMLT 93

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTK 125
            + ++ +    L  +    +  + +L+ +V  A  + I   +  LS  P         + 
Sbjct: 94  LILILAIIAGVLFVVVPELVNTIADLIGQVPTAVNNLINWLQVKLSAYPEYEEKLSSISI 153

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +     S  +   +      I+      S F     ++ +  +F +  LF   R      
Sbjct: 154 NWDSVLSNVMNFLSIGTKGIINGGIGAISGFFSGVANFFIGFVFSVYVLFQKERLTAQCK 213

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +             ++ R+      +   G  + A   G +      +  +P  + +G
Sbjct: 214 KLMYVCMPENRADKIVEVLRLTNTTFSNFLSGQCLEACILGTMFVITLSILRMPYALLIG 273

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I A+ A+IP         V + L++  +   A        I   I    + P +VG  +
Sbjct: 274 IIIAVTALIPIVGAFIGCIVGVILIMMTSPLKALIFVGVFLILQQIEGNLIYPHVVGSSV 333

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            LP +     +  G    G++G+     + ++   + +  +    E KE     F
Sbjct: 334 GLPGIWVLVAVTIGGNLFGIMGMLTFIPISSVCYALLRTYVNRKVEEKEIDKGKF 388


>gi|281491674|ref|YP_003353654.1| hypothetical protein LLKF_1206 [Lactococcus lactis subsp. lactis
           KF147]
 gi|281375392|gb|ADA64905.1| Hypothetical protein LLKF_1206 [Lactococcus lactis subsp. lactis
           KF147]
          Length = 390

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 105/327 (32%), Gaps = 6/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV+ A +  +   PI      K+        ++  + +  L    L+      
Sbjct: 53  FITVISLPVILAAVFYYLLNPIVDFLEKKRV-PRVVTIIVLFLIIAALIAWGLIVAIPNI 111

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +    S V             L+  P          +      +  I        N 
Sbjct: 112 ISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKAFSVNA 171

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +    S+   I +            LF+  RDG  ++  +  L  + +     K+  
Sbjct: 172 VTTLSHLISKTTSILISLI----VFPFVLFYLLRDGQRLNGFVTHLLPNDWRKETSKVLH 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + +   G  ++AI   ++      + G+   VAL +    + ++P          
Sbjct: 228 EINSQLSNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIP 287

Query: 266 SIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + + L  G       + +   IE  +  + + P ++G  + +  +   F L+   + +G
Sbjct: 288 MVIVGLAIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILG 347

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G+ +     A + VI        +E
Sbjct: 348 VWGVLLAIPFYATLKVIIVHVYEWYRE 374


>gi|167758907|ref|ZP_02431034.1| hypothetical protein CLOSCI_01253 [Clostridium scindens ATCC 35704]
 gi|167663314|gb|EDS07444.1| hypothetical protein CLOSCI_01253 [Clostridium scindens ATCC 35704]
          Length = 497

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/391 (12%), Positives = 116/391 (29%), Gaps = 33/391 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK-------------GFFAPVLSALIIGFTSWPI 47
           +R+     +G+  ++++   ++  + L                  PV+   +I +   PI
Sbjct: 75  LRQQFS--RGMTYFLVVAASILFYFALLRVTNLSEGFSKIFQVLKPVVYGCVIAYLLNPI 132

Query: 48  YSS--------FISKKEES-------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
                         K +              +++ + ++ L +     L       ++ L
Sbjct: 133 VKKADKYLAPVLEKKVKTPGRAKKTARGIGILLSLILLLVLVVTLCNMLIPELYSSIRNL 192

Query: 93  VSKVVLANQHGIPVPR--WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           V  +       +       + D   G        +     Q              +  + 
Sbjct: 193 VFTLPGQLNDLVDKLNTIKIDDSTTGTLIKAAIEEGTDMLQKWLRTDLLGRANEIMSNLT 252

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                      +  + II  +  LF          + + ++           ++    ++
Sbjct: 253 VGVINILNEIFNALIGIIISVYILFSKETFIRQTKKCVYAILSPRHANMVLHLTTKSNEI 312

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
                +G  I +   G++      +  +P  V + VI  +  +IP   P      S  L+
Sbjct: 313 FGGFIIGKIIDSAIIGVLCFFGLTILNMPYAVLVSVIVGVTNVIPFFGPYIGAIPSAILI 372

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +        ++  +        L P ++G    L        ++ G    G +G+ +
Sbjct: 373 MLADPIKGLYFIIFILLLQQFDGNILGPKILGNSTGLSAFWVIVAILLGGGLFGFVGMIM 432

Query: 331 GPVLMALIAVIWKESIMAIKENKE-KISSNF 360
           G    A++  I +  +    E K+   +SNF
Sbjct: 433 GVPTFAVLYYIVQMIMNYRLERKKLPANSNF 463


>gi|90410495|ref|ZP_01218511.1| putative membrane protein [Photobacterium profundum 3TCK]
 gi|90328736|gb|EAS45020.1| putative membrane protein [Photobacterium profundum 3TCK]
          Length = 379

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 127/349 (36%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  +I+ +   +K F  PVL   II     P+     +         A I
Sbjct: 23  MVESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALLPLTQKLEAMLGGRRGLSATI 82

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + P + +       +  L   V   +       + ++DIP           
Sbjct: 83  LALLGITLLVAPFVLVSGSIFDAVTHLTDVVQSGDIKIPGPTQRIADIPVIGDKLFEVWS 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +          +  +           + + +S+      +        +I 
Sbjct: 143 LFSTNLEKAVTHFLPEIKTAVGTMASLVGSSLATLVMFIISLAIAAGFMTHSKACSEAIG 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +       + ++ + +    IRS  LG+  +A  + +++G+  ++ GVP+   + 
Sbjct: 203 TVAVRVV----GKHGEEWTTLTAATIRSVLLGVVGVAFIQSMLVGAGMFVFGVPAAGLIT 258

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   I+ +    A I    V  Y+    +  +AT   +W  +   I D  L+P L+G  +
Sbjct: 259 LGVLILGIAQLPALIIVAPVIFYVFSTQDTTSATIFTVW-VLLAGISDNFLKPMLMGRGV 317

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +P      G +GG+   G++GLF+G V++A+   ++   +   ++   
Sbjct: 318 DVPMPVILIGAIGGMLAAGIIGLFLGAVVLAIWYELFVTWLKLDQDETP 366


>gi|302187851|ref|ZP_07264524.1| hypothetical protein Psyrps6_15958 [Pseudomonas syringae pv.
           syringae 642]
          Length = 357

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 124/352 (35%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDMRRWFWIGGLALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +  LL L      ++  L                       G+       
Sbjct: 60  VVFGLFTLVLMALLLVLVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L      A   K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 TGKIRGLLPRQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +       V+      G+++    +     I   +    L P LV
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAGFMIGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 347


>gi|251793815|ref|YP_003008547.1| PerM [Aggregatibacter aphrophilus NJ8700]
 gi|247535214|gb|ACS98460.1| PerM [Aggregatibacter aphrophilus NJ8700]
          Length = 352

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 100/346 (28%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +PQ +    I+    +++YF     AP+L A+++ +           K +      
Sbjct: 11  RRFSDPQAMGLAAILLFGFIAIYFFSDLIAPLLVAIVLAYLLEWPVRLLNEKLKCPRLLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +   +   L  + +L L      +M  L+S +             L +    +  ++ 
Sbjct: 71  TTLVIGTFTGLVFLVVLVLLPNLWTQMVNLLSDLPHMFNKFNEWLLSLPERYPDLIDTKT 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   +   +          +  +    +          +    + + +FF  +D  
Sbjct: 131 VESIFGSVKEKILGLGESALKLSLASLMNLVT--------LGIYAFLVPLMVFFLLKDKR 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +              +   + + I +   G  +       V    + + G+   +
Sbjct: 183 QLMDGVSRFLP-RNRTLASAVWVEMQQQISNYIQGKLVEIFVVAAVTYMIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V   I  ++P    +      + +     G+      + +   +   +    L PFL
Sbjct: 242 LLAVAVGISVLVPYIGAVLVAIPVVLVAIFQFGDTHTFWYIVIAFVVSQLLDGNLLVPFL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  L     ++      G  G+F    L  L+  +     
Sbjct: 302 FSEAVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWP 347


>gi|55823064|ref|YP_141505.1| hypothetical protein str1142 [Streptococcus thermophilus CNRZ1066]
 gi|55739049|gb|AAV62690.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 392

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 120/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILV--------------SLYFLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++ ++I+ +I +               + FL     P++ ++++ +   P+   
Sbjct: 18  ILNNQAVVSFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLV-L 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + K     T   ++    +  L +  +         ++  L+                 
Sbjct: 77  LVEKIGLDRTMAILVIYAILALLLVWGISTAIPNLQDQILILLRNAPSYISRANSETERW 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +P            LS   +  +       T+ + +I  FAS    + +   L+   +
Sbjct: 137 LKLPILSNFHGNLEAMLSDFSARMVNYAENFSTSALSWIGTFASTVARVTVAIILTPFIL 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +  RD   +     S     F     ++   +   +     G   +AI   ++  
Sbjct: 197 F----YLLRDSQKLKHSFVSALPTRFRETTVRMLSDINNQLEGYVRGQVTVAIVIAIMFC 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+   +  G++   + MIP           + + +         + +   IE  
Sbjct: 253 IMFKIVGLRYGMTFGILAGFLNMIPYLGSFIAMVPVVIMGLVQGPTMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + VI K+     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVIVKDIFDWYR 372


>gi|148243672|ref|YP_001219912.1| hypothetical protein Acry_3145 [Acidiphilium cryptum JF-5]
 gi|148243720|ref|YP_001219960.1| hypothetical protein Acry_3196 [Acidiphilium cryptum JF-5]
 gi|146400235|gb|ABQ28770.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
 gi|146400283|gb|ABQ28818.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
          Length = 660

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/367 (11%), Positives = 111/367 (30%), Gaps = 32/367 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +  G+M  + + + + +L   +    P+  A+++ F   P+ +    +         V
Sbjct: 17  INDTSGLMTLISVVVAVATLSIARDVLIPITLAVLLSFLLAPLVNLL-RRTGLGRVPGVV 75

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A +  + + +     +      ++ +L   +             +     G  ++ + +
Sbjct: 76  LAVLLALGVILGTAGLIG----TQVADLADDIPRYTDTIQQKVDAVQSATFGRLSAFVGS 131

Query: 125 KHLSHPQSLKILSETFLKTNGI-------------------------DFIPRFASRFGMI 159
                 +     +                                    + + A R    
Sbjct: 132 MGSQINRDSHASAGAPASAGTTVSAASAAAPTNAAAKPIPVEVHQPEPSLMKLARRVLTP 191

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L   ++   +++   F       +  +L  +                   +   FL + 
Sbjct: 192 ILSPLMTTAIVVVVAIFILLRPEDLRDRLIRMLGTGDLHRTMTAMDEAGHRLSRYFLTLL 251

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
            +    G ++G   ++ GVPS V  G++  +M  IP   P    A+ + L    +   + 
Sbjct: 252 ALNTAFGSMIGLGLFVIGVPSAVLWGIMAILMRFIPYIGPWLAAALPLALAAAVDPGWSM 311

Query: 280 CLFLWGAIEL--FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            L+      +   ++ + + P   G    L  L      +      G +GL +   L   
Sbjct: 312 LLWTGTLFVVSEGVMGQVIEPMAYGHSTGLSPLSVVVAAIFWSWLWGPVGLILSMPLTLC 371

Query: 338 IAVIWKE 344
           + ++ + 
Sbjct: 372 LVILGRH 378


>gi|312278450|gb|ADQ63107.1| Predicted membrane protein of the putative permease (PerM) family
           [Streptococcus thermophilus ND03]
          Length = 392

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 120/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILV--------------SLYFLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q ++ ++I+ +I +               + FL     P++ ++++ +   P+   
Sbjct: 18  ILNNQAVVSFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLV-L 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + K     T   ++    +  L +  +         ++  L+                 
Sbjct: 77  LVEKIGLDRTMAILVIYAILALLLVWGISTAIPNLQDQILILLRNAPSYISRANSETERW 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +P            LS   +  +       T+ + +I  FAS    + +   L+   +
Sbjct: 137 LKLPILSNFHGNLEAMLSDFSARMVNYAENFSTSALSWIGTFASTVARVTVAIILTPFIL 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +  RD   +     S     F     ++   +   +     G   +AI   ++  
Sbjct: 197 F----YLLRDSQKLKHSFVSALPTRFRETTVRMLSDINNQLECYVRGQVTVAIIIAIMFC 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+   +  G++   + MIP           + + +         + +   IE  
Sbjct: 253 IMFKIVGLRYGMTFGILAGFLNMIPYLGSFIAMVPVVIMGLVQGPTMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + VI K+     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVIVKDIFDWYR 372


>gi|306838115|ref|ZP_07470972.1| transmembrane protein [Brucella sp. NF 2653]
 gi|306406852|gb|EFM63074.1| transmembrane protein [Brucella sp. NF 2653]
          Length = 361

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 10  MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 70  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 129 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 188

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 189 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 247

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 248 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 307

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 308 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 356


>gi|269217867|ref|ZP_06161721.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212802|gb|EEZ79142.1| conserved hypothetical protein [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 473

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 104/335 (31%), Gaps = 20/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ + +     + L+ +   F P   AL +  T  PI+   I K        A+    
Sbjct: 60  KALIVFSLATFGCIGLHEVSNLFGPAFFALTLVLTVRPIHRWLIRK-GLPPWLSAIFTMT 118

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++    +  +    +  +     L   +   +     + + + D+      S        
Sbjct: 119 ALFGFLLGMVGLTVWSLID----LPDTLKSYSGSFKGLVQNVVDLAEKYNLSS-GKLSKD 173

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L         T  ++++    S  GMI L      +              +++ + 
Sbjct: 174 LLDNLDFDKIVTAVTTVLEYLTSAGSLLGMISLSMLFITV-------------DTMTMKF 220

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S   +   +++          +R  ++  +I      +V G       VP   A  + +
Sbjct: 221 RSKIVYEHDSHFHDALEGFEGRVRQYWIVSSIFGAIVAVVNGIVLAFLHVPMPAAWAIFS 280

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    +        + L+      A  + +  ++   ++    +P + G  + L
Sbjct: 281 FVTNYIPNIGFVIGLVPPALMGLLDSGWLTALWVVIAYSVINSVIQGIFQPKITGDAVGL 340

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               TF  L+     +G LG  +   L      + 
Sbjct: 341 STTVTFLSLLFWTVVIGPLGAILAVPLTLFAKALL 375


>gi|328945816|gb|EGG39967.1| permease [Streptococcus sanguinis SK1087]
          Length = 360

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 111/337 (32%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCRVPWKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|295397406|ref|ZP_06807494.1| permease [Aerococcus viridans ATCC 11563]
 gi|294974353|gb|EFG50092.1| permease [Aerococcus viridans ATCC 11563]
          Length = 371

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 109/320 (34%), Gaps = 6/320 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +        P++ A  + +   PI      +         +++ + V+    + LL + 
Sbjct: 37  LIGMASAILLPLIVAGFLYYMFDPIVVFLEERGGVPRVIGFLLSFIVVVFAGALILLNVV 96

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL   + +  +        LS+        E    +L    +   LS   L 
Sbjct: 97  PEMVEQTTELTQNLPIYAEETGRWLNELSN------KEEFKNLNLVEQLNSANLSINNLI 150

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G+       S      +++ + +  +   L F ++DG S    +            ++
Sbjct: 151 RVGVINATTGLSLIVGFAMNFLVLLFTVPFILVFMFKDGHSFLDAVSKFFPLTIRKELRQ 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R + + + +      + A   G++   A  +   P  + L +   +  +IP   P   
Sbjct: 211 TVRELNETLSAYISSTVLDAFIVGILSFLAMMIFKQPYGLLLAIFCGVANIIPYVGPFIG 270

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ + +  +   A  + L   +   +    ++P L G  + +  L     L+G    
Sbjct: 271 AVPAVIVGLFISPLQALYMGLSILVIQQLDGNLIKPLLFGKSMNIHPLTIILLLIGAGSI 330

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G+LG+ I   + A+I  + 
Sbjct: 331 AGILGMLICIPVYAVIKTLI 350


>gi|156932965|ref|YP_001436881.1| hypothetical protein ESA_00768 [Cronobacter sakazakii ATCC BAA-894]
 gi|156531219|gb|ABU76045.1| hypothetical protein ESA_00768 [Cronobacter sakazakii ATCC BAA-894]
          Length = 354

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 109/355 (30%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I    I+      L+FL G  AP+L A+++ +      S    +   S   
Sbjct: 10  RRRFSDPEAIALLAILVAGFCILFFLHGLLAPLLVAIVLAYLLEWPTSRLQ-RIGCSRGL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + +V    +      +   L+  +             L      +  + 
Sbjct: 69  AATLVLVLFIGIVLVMAFVVVPVAWQQGINLIRDIPGMLNKLSDFAATLPKRFPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  I     +    +  +    +          + +I + + +FF  +D 
Sbjct: 129 IIDAIAENMRTRIITLGDSVVKYSLASLVGLLT--------LAIYLILVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  I  G+     + + G+   
Sbjct: 181 EQLLNAVRRVLP-RNRGLAGQVWVEMNQQITNYIRGKVLEMIVVGVATWIGFLIFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  I  +IP       T     + L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGISVLIPYIGAFMVTIPVVCVALFQFGMGTEFWSCFAVYLIIQGLDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     +V      G  G+F    L  LI  +           +E
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGIFFAIPLATLIKAVVHAWPETTPTAQE 354


>gi|322388018|ref|ZP_08061625.1| membrane protein [Streptococcus infantis ATCC 700779]
 gi|321141291|gb|EFX36789.1| membrane protein [Streptococcus infantis ATCC 700779]
          Length = 366

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 111/340 (32%), Gaps = 6/340 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L    + + + PI      +   +     ++    +    ++ 
Sbjct: 29  AIITPFVSVVNTIMIPFLLGGFLYYLTNPIVIFLEKECRINRIIGILLTLCVLFGTIVIA 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L++           +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLSSLINSSQDIYSRIQDLVIELSKYPTFQELD------IQQTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +           +   L II   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVTNSVGSVLSALVSTVLIIIMTPVFLIYFLLDGHKFLPMLERTILKRDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + I     G++I A   G +    Y + G+   +   + + +  +IP  
Sbjct: 203 LNISGLITNLNETISRYISGVSIDAFIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I   +  +        ++  I   +    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMIISNLFTDPQKMIIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                 G++G+ +     +++  I K  +   +++KE   
Sbjct: 323 LSSNIYGVVGMIVAVPTYSILKEISKFLLRLYEKHKEVQE 362


>gi|116492395|ref|YP_804130.1| permease [Pediococcus pentosaceus ATCC 25745]
 gi|116102545|gb|ABJ67688.1| Predicted permease [Pediococcus pentosaceus ATCC 25745]
          Length = 376

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 110/345 (31%), Gaps = 10/345 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+      F+   F P++ A  + +   P+          K +   T   VI  V  + L
Sbjct: 32  FLFTPIGTFISTVFMPIILATFLYYMLNPLVKLLTKVRYKKFKIPRTLAIVIVFVLFITL 91

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +       + ++ +++  +    +        L +               +     
Sbjct: 92  IVWGISSFLPNLIDQVSQMLGNLPYIVKRLQKTVPQLLEHSWLKKID------FAPFIKN 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +               +  + +I + I LF+  +DG+ +   +  +  
Sbjct: 146 INSEIGKYAEGFLAGTALHIGNLISTLTNATVVVITVPIILFYMLKDGYKLIPTVAQVVP 205

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           H        +   +   + S   G  I  +  G      Y +   P  + LGVI  I  +
Sbjct: 206 HRNRKNVVDLFNTMSDTLSSYISGQVIECLFVGTFTVIGYMIIQQPYGLLLGVIAGICNI 265

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I  +      + +   I   +    + P ++G  +++  L   
Sbjct: 266 IPYVGPYFGIFPSLLVAIAQSPGQVVSVIIVVLIVQQVDGNFIYPNVIGKSLQIHPLTII 325

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L+   +  G+LG+ +     A++ V+        K ++E I  
Sbjct: 326 ILLLVAGKISGILGMILAVPAYAIVKVLINFIHHIWKLDQETIEE 370


>gi|90414156|ref|ZP_01222138.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
 gi|90324828|gb|EAS41361.1| hypothetical membrane protein [Photobacterium profundum 3TCK]
          Length = 368

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/354 (18%), Positives = 141/354 (39%), Gaps = 5/354 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  ++  S   +K F  PVL   II     P+     +  +      A +
Sbjct: 19  MVESAIRVGLLFILLAWSYGIVKPFLIPVLWGAIIAVALMPLTVKLENMLKGKRGLSATV 78

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +  VP +      +  ++ + S +             +++IP          +
Sbjct: 79  IALIGILILTVPFVMFSISMVESVEGITSTISSGTLKIPGPTERIANIPIIGQQIFDVWQ 138

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S              T+G+  +        +  L + +S++        F  +  SIS
Sbjct: 139 LFSTNLEKAFTKFLPQLTSGLAMMASVVGNSIVSILMFVISLLISAA----FMANATSIS 194

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +++L   +  A+ ++ + +    IRS  LG+  +A  +  ++G   +  G+P+   + 
Sbjct: 195 KSVNTLSVRIAGAHGEEWATLCTATIRSVLLGVVGVACIQAFLVGIGVFAIGLPTAGLIT 254

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  + A+    A +    V  Y+    +   AT   +W  +   + D  L+P L+G  +
Sbjct: 255 ILVLVFAIAQLPALLVVAPVIAYVYSIHDSTTATIFAVWTLLA-GLSDNFLKPLLMGRGL 313

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +P      G +GG+ + G+LGLFIGPV++A+   ++ E +    +  E+    
Sbjct: 314 DIPMPVILLGAIGGMVSSGILGLFIGPVILAIWYQLFNEWMHESAKADEQEEQE 367


>gi|194017074|ref|ZP_03055686.1| membrane protein YrrI [Bacillus pumilus ATCC 7061]
 gi|194010942|gb|EDW20512.1| membrane protein YrrI [Bacillus pumilus ATCC 7061]
          Length = 354

 Score =  130 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 115/328 (35%), Gaps = 11/328 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               LK    P+L A+ I +  +PI     +      T   ++  V       + +    
Sbjct: 35  IFLLLKAVLIPLLIAIFISYLLYPIVEKLHA-GGLPRTVSLLLIYVLFFGGIGLAVYKGA 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++ EL  ++ +  +        +         S            L + SET+  
Sbjct: 94  PVMIKQLNELSEQIPVLAETYNGALSHIHHHT-----SHWPDGLHDRLDRLIVQSETYAA 148

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 I         + LDY L    +   +F+  +D  ++ +    L    F      
Sbjct: 149 NGAERMILSC-----KVLLDYALVAALIPFLVFYMVKDMNTMKRVAWYLTPPSFRKRGHA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + + +   G  ++    G       WL  +P  + LG++     +IP   PI  
Sbjct: 204 FVKAVDESLGNYIRGQLLVCSLIGGAAAIVLWLFHIPYPLVLGMLIGATNVIPYFGPIIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++++    ++ +   + +  A+  F+    L P +VG  + +  +     L+ G   
Sbjct: 264 AVPAVFIAFTISVKSVIIVLITVAVLQFLESNVLSPIIVGRSLHMHPVVIMLVLLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            GL+G+ +     A+I VI  + I+  +
Sbjct: 324 FGLIGMILAVPTAAIIRVIIVQYILMRR 351


>gi|253989383|ref|YP_003040739.1| inner membrane protein [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780833|emb|CAQ83995.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 369

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 137/349 (39%), Gaps = 6/349 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
                +  +I+ S + +K F    + A ++   +WP+     +           I T+ +
Sbjct: 15  FTLIFLSLLIVTSFWVMKPFILGFVWAGMVVIATWPLLEKLQNSLWGKRWLAVAIMTLLL 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + LF++P++ L    +     L++         +P   WLS IP  G      W   ++ 
Sbjct: 75  ILLFVIPIVLLVSSLLENSAPLIAWAKSPTNFQMPAMTWLSSIPLVGDKLYSGWNSLITD 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++ I            +    A+  G     +   +  M++     Y  G  ++  + 
Sbjct: 135 GGNVLIAKVQPYIGEAATWFFTQAANAGR----FVFHLALMVLFSVLLYLKGEQVTMSIR 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L          +  + IR+  LG+ + A+ + ++ G    ++G+P    L V+  
Sbjct: 191 HFAVRLADKRGDAAILLAAQSIRAVALGVVVTALVQAIIGGIGLAVSGIPYATLLTVLMF 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +   G  +       +L   G+    T L +W  +   +    LRPFL+     LP 
Sbjct: 251 VCCVAQIGPLLILVPAVAWLYWTGDTTWGTALLVWSCVVTTMDG-FLRPFLIRLGADLPM 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++GG+ + G++GLFIGPV++A+   +    +  I E K  ++ 
Sbjct: 310 ALILTGVIGGILSFGMIGLFIGPVVLAVAYRLLIAWMNEIPEPKNDLTE 358


>gi|330428771|gb|AEC20105.1| hypothetical protein PT7_1565 [Pusillimonas sp. T7-7]
          Length = 353

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/345 (20%), Positives = 147/345 (42%), Gaps = 3/345 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++  + +  ++ L  ++  +    I+     P+  S + K        A+   + ++
Sbjct: 11  FLLLLAAVSIAFIWILLPYYGAIFWGAILAIIFMPLNRSLLGKMRGRRNLAALATLLIII 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+P++ +    + E   +  ++     +       + +        ++  +      
Sbjct: 71  LIVIIPMILITASLLQEGASVYQRISSGQLNLGAYFEQIMNALP-ESVHDVMMRFGVGDV 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  + +   G  ++   A   G     + +S+  M+  LFF  RDG S+++    L
Sbjct: 130 FSLREKLSSMALEGSKYLASQAVNVGQNTFQFLISMGIMLYLLFFLLRDGGSLARHSKHL 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L   + + + R    V+R+T  G  ++A  +G + G  +W  G+   +  GV+ A +
Sbjct: 190 IP-LSEEHKQHLFRKFATVVRATVKGNIVVAATQGTLGGLMFWFLGIQGALLWGVLMAFL 248

Query: 252 AMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P  GA I +  V++Y L+ G ++    L L+G + + +VD  LRP LVG   K+P  
Sbjct: 249 SLLPAVGAAIIWVPVAVYFLVTGAVWQGVTLTLFGVLVIGLVDNILRPLLVGKDTKIPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                 +GG+   GL G  IGP+  AL    W     AI+ N E+
Sbjct: 309 VILVSTLGGLAVFGLNGFVIGPLFAALFIACWDLFPSAIRMNHEE 353


>gi|167768068|ref|ZP_02440121.1| hypothetical protein CLOSS21_02612 [Clostridium sp. SS2/1]
 gi|167710397|gb|EDS20976.1| hypothetical protein CLOSS21_02612 [Clostridium sp. SS2/1]
          Length = 375

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 117/342 (34%), Gaps = 6/342 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCL 73
           ++   + ++     P +    + F      S F  K      +   +   ++A VS++ +
Sbjct: 30  VVFSGISYVSSVAFPFILGSCVAFIINVPMSFFERKLFYKLKKGKRSLSLIMAIVSIVGV 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHLSHPQS 132
            ++    +    +  + +L + +    +    +    S + P         T        
Sbjct: 90  ILLVSRLIIPELVDTIFKLSNNIPEYVKEIQALLEKTSMNKPMVHKYVNQITFDWDKISG 149

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I       T+ ++      +      + + L  +F + AL    +    + + L +  
Sbjct: 150 ELITFLQDGATSMLNSTVSAITDVVQFIVSFALGFVFALNALLQKEKLSMQVKKVLVAFL 209

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                 Y  ++ R+      S   G  + A+  G ++ ++  L G+P  V + V   +M+
Sbjct: 210 PERVAKYIVRVGRLSNNAFSSFLSGQCLEAVILGCLIFASMKLLGLPYAVLIAVFIGVMS 269

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP         V + L+   +   A    +   +        + P +VG  + LP +  
Sbjct: 270 LIPIIGGFIGCWVGVLLIFMVDWKQAIIFIIMFVVVQQFEGNVIYPHVVGNSVGLPAIWV 329

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +  G    G++G+       +++  ++ E +    + K 
Sbjct: 330 LVAVTIGGNIAGIVGMIFSIPFCSVLYQLFSEIVNKQIKKKN 371


>gi|311069680|ref|YP_003974603.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
 gi|310870197|gb|ADP33672.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
          Length = 368

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 117/351 (33%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFI-------ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
                Q +   +I+ +           + F+   F P+L A I+ F   P+      K  
Sbjct: 7   HFWTLQILFVLLIILVSTKVSFIFQPFIIFISTLFFPILIAGILFFIFNPVVRLLEKK-- 64

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              T   ++  +  + L +     +      ++  L   +    +    +   LS     
Sbjct: 65  IPRTLSILLIYLLFIGLLVFVFATVGPILTSQISGLFGNLPEYIKQIQGLTNDLSHSQWF 124

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            W             S    S T    +    I    S    +  +  L II +   LF+
Sbjct: 125 TW----MMNQDYVSISKIEQSLTSFLQSLPQNITSSLSAVFGVVTNITLVIITVPFILFY 180

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG         +    +     KI + +   + + F G  +I +  G      Y + 
Sbjct: 181 MLKDGHRFPHLAVKILPASYRTEGMKIFKDLYDTLAAYFQGQLLICLFVGTACFIGYSII 240

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+P  + LG++ A+  +IP   P    A ++ + +  +   A    +   +   +    L
Sbjct: 241 GLPYALILGLVMAVTNIIPYVGPFLGAAPAVIIGLMDSPARALFAIIVVVVVQQLDGNLL 300

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            P ++G  +    L     L+G     G+LG+ +   + A++   +   + 
Sbjct: 301 SPLVIGKRLNTHPLTIILLLIGAGSFGGILGMILAVPVYAVLKAFFLNIVR 351


>gi|256825244|ref|YP_003149204.1| putative permease [Kytococcus sedentarius DSM 20547]
 gi|256688637|gb|ACV06439.1| predicted permease [Kytococcus sedentarius DSM 20547]
          Length = 476

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 94/287 (32%), Gaps = 17/287 (5%)

Query: 46  PIYSSFISKKEESSTFLAVIATVS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           P+           +  LA + TV   + + +  L  +    + +  ++  + V   +   
Sbjct: 91  PVARFLRRFM---TDGLAAMTTVIGALLVLLGVLTAIAPSLVDQSTQMADRAVTGIEEVQ 147

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                        WAS              I   T         I               
Sbjct: 148 T------------WASGPPLNIQDSQIDKAITQLTQRIQEASGDIAGGVFTGVSAVASAF 195

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           ++++  ++  FFF RDG      +  L       ++  +   + + +     G  II+  
Sbjct: 196 VTVLMTLVLTFFFVRDGEKFLPWISRLSGRTAAPHFLALGTRLWRTLGGYVRGQAIISAV 255

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFL 283
           + +++G A  L GVP   AL ++T +   +P    ++   +SI + L+      A  L  
Sbjct: 256 DAVLIGIALVLLGVPMAGALIILTFLGGFVPIVGAVAVGILSILVALVSVGFTKALILLA 315

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                  +    L+P + G  +++        +  G    G+ G F+
Sbjct: 316 VVLFVQNVEGNILQPIVQGKAMQMHEGLVLLSVTVGGSLFGIPGAFL 362


>gi|163801820|ref|ZP_02195717.1| uracil phosphoribosyltransferase [Vibrio sp. AND4]
 gi|159174328|gb|EDP59132.1| uracil phosphoribosyltransferase [Vibrio sp. AND4]
          Length = 356

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 111/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YFL    AP+L A+++ +           +     TF
Sbjct: 10  KRRFSDPHAVSLVAILLFGFITIYFLGHLIAPLLVAIVLAYLLEWPVIQMC-RLGIPRTF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  +  + L ++ +  L      ++  L++ +             L +    +    
Sbjct: 69  SVIIVILIFIGLMLIAVFGLVPTIWTQVGNLINDIPNMYAGLQKFIATLPERYPELANLR 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IVETLVTNAKNQAIGLGESVVKGSLASLVSLAT--------LAVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 EEMMSMASGILP-KNRRLANKVWHEMNEQISNYIRGKVLEILIVGSVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V   +  +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 ALLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLAPPFYWLLVAYGIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L  L+  +W           
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGMWGFWGVFFAIPLATLVKAVWNALPSTEDNEP 353


>gi|37526518|ref|NP_929862.1| putative inner membrane protein [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785949|emb|CAE15001.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 369

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 135/349 (38%), Gaps = 6/349 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
                +  +I+ S + +K F    + A ++   +WP+                 I T+ +
Sbjct: 15  FTLIFLSLLIVTSFWVIKPFIFGFVWAGMVVIATWPLLEKLQDSLWGKRWIAVSIMTLLL 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSH 129
           + LF++P+  L    +     L+      +   IP   WL+ IP  G      W   ++ 
Sbjct: 75  ILLFVIPIALLVSSLLENSAPLIQWTKSPSHFQIPTMTWLNSIPLVGDKLYSAWNSLITD 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++ I            +    A+  G     +   +  M++     Y  G  ++  + 
Sbjct: 135 GGNVLIAKVQPYVGEAATWFFTQAANAGR----FVFHLCLMVLFSVLLYLKGEQVTMSIR 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L          +  + IR+  LG+ + A+ + ++ G    ++G+P    L V+  
Sbjct: 191 HFAIRLANKRGDAAILLAAQSIRAVALGVVVTALVQAIIGGLGLAVSGIPYATLLTVLMF 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +   G  +       +L   G+    T L +W  I   +    LRPFL+     LP 
Sbjct: 251 VCCVAQLGPLLILVPAVAWLYWTGDTTWGTVLLVWSCIVTTMDG-FLRPFLIRLGADLPM 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++GG+ + G++GLFIGPV++A+   +    +  + E +  ++ 
Sbjct: 310 ALILIGVIGGILSFGMIGLFIGPVVLAVAYRLLIAWMNEVPEPENDLAE 358


>gi|94312981|ref|YP_586190.1| hypothetical protein Rmet_4053 [Cupriavidus metallidurans CH34]
 gi|93356833|gb|ABF10921.1| conserved hypothetical protein; putative inner membrane protein
           (permease) [Cupriavidus metallidurans CH34]
          Length = 361

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 143/355 (40%), Gaps = 3/355 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E+          ++  + +   + L  F+  V    ++     P+     +     + 
Sbjct: 1   MAESPGLYHKTFLLLLAAVSIAFFWILLPFYGAVFWGAVLAIIFAPLQRRLTAGLRGRNN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + V+ L I+PL  +    + +   L   +     +     +   D       +
Sbjct: 61  VAALLTLLLVLVLVILPLTIITASLINQGVSLYDSIRSGQLNFGVYFQRAVDALPPYVRT 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L+    L+             F+   A   G     + +S   M+  LFF  RD
Sbjct: 121 LLAKVDLTSIADLQEKLSASALQ-ASQFVATRALSIGQNTAQFVISFGIMLYLLFFLLRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S+++ +    L   Y + + +    V+R+T  G   +A+ +G + G  + + G+  
Sbjct: 180 GPRLSRKIRTAVP-LSDLYKQHLIQKFTTVVRATVKGNVAVALVQGTLGGGIFAVLGIQG 238

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GVI A ++++P     + +  V++Y L+ G+      L  +G + + +VD  LRP 
Sbjct: 239 ALLWGVIMAFLSLLPAVGAGLIWAPVAVYFLLTGSTVTGLVLIGFGVLVIGMVDNVLRPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LVG   ++P        +GG+   GL G  IGP++ AL    W  +   I EN +
Sbjct: 299 LVGKDTQMPDYVVLISTLGGMALFGLNGFVIGPLIAALFIACWDLNAHGIDENGD 353


>gi|331266508|ref|YP_004326138.1| hypothetical protein SOR_1140 [Streptococcus oralis Uo5]
 gi|326683180|emb|CBZ00798.1| conserved hypothetical protein [Streptococcus oralis Uo5]
          Length = 369

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 108/337 (32%), Gaps = 6/337 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + PI +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+            +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLTSLIISSQNIYSRLQDLIIDLSMNPVFQNID------IQQTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 143 YVDILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTVLKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLSSLLTNLNTTIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       +   +  +         +  I   I    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMVIANVFTDPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G++G+ +     ++   I K      + +KE
Sbjct: 323 LSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|308174808|ref|YP_003921513.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607672|emb|CBI44043.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens DSM 7]
 gi|328554762|gb|AEB25254.1| integral inner membrane protein [Bacillus amyloliquefaciens TA208]
 gi|328913116|gb|AEB64712.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens LL3]
          Length = 386

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 113/333 (33%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    PV+   I+ +   PI      K      +  ++  + ++ L  + 
Sbjct: 42  FIFTPIIVLLKTIALPVILTGIVYYLLNPIVDILE-KLRVKRVYSILLLYLIIIGLISIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +           + L     G        K ++   S     
Sbjct: 101 IVSIIPFLKEQIMSLIDNLPKYVDIVEDQTKSL----IGSDFVNQAQKTMNINISDLANK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +       +        F     +  +SI+ +   LF+  +DG  +   +         
Sbjct: 157 VSAQAATIANSTFTGVGNFIGALTEVIISIVTVPFILFYLLKDGKKLPFYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTMLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSVVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   +  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPLMLLKLAIVWTVVQLVEGKLISPQIMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+I V+        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVIKVVTTHLFDWFK 369


>gi|111657407|ref|ZP_01408160.1| hypothetical protein SpneT_02001377 [Streptococcus pneumoniae
           TIGR4]
          Length = 332

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 106/320 (33%), Gaps = 5/320 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             PV+ + ++ +   PI        + +      I  V +    I  L         ++ 
Sbjct: 1   MLPVILSGLLYYLLNPIVDWMEKH-KVNRVIAITIVFVIIALFIIWGLAVAIPNLQRQVL 59

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
                V +  +    +   L              + L++  S   +  + + +  ++++ 
Sbjct: 60  TFARNVPVYLEDIDRIVNGLVAQHLPDDFRPQLEQVLTNFSSQATVLASKVSSQAVNWVS 119

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
            F S    + +        +   LF+  RDG  +   L             ++   V + 
Sbjct: 120 AFISGASQVIVALI----IVPFMLFYLLRDGKGLRNYLTQFIPRKLKEPVGQVLSDVNQQ 175

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + +   G   +AI   ++    + + G+   V LGV   I+ ++P          ++ L 
Sbjct: 176 LSNYVRGQVTVAIIVAVMFIIFFKIIGLRYAVTLGVTAGILNLVPYLGSFLAMLPALVLG 235

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +         + +   +E  I  + + P ++G  + +  +   F L+      G+ G+ +
Sbjct: 236 LIAGPVMLLKVVIVFIVEQTIEGRFVSPLILGSQLNIHPINVLFVLLTSGSMFGIWGVLL 295

Query: 331 GPVLMALIAVIWKESIMAIK 350
           G  + A   V+        K
Sbjct: 296 GIPVYASAKVVISAIFEWYK 315


>gi|328956583|ref|YP_004373969.1| hypothetical protein CAR_c02020 [Carnobacterium sp. 17-4]
 gi|328672907|gb|AEB28953.1| conserved hypothetical protein [Carnobacterium sp. 17-4]
          Length = 369

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 108/327 (33%), Gaps = 5/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                 AP++ A I  +   PI        +    +  +I  ++++ +    +   F   
Sbjct: 22  IFSTLVAPLILAFIFYYLLNPIVDWMERH-KIKRIWGVLILFIAIIGILAGLVALAFPPI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++  LV+                        A   + + L+   S        +  + 
Sbjct: 81  QEQITSLVNNFPSYVDSMGITILSWVANTPLESAVSEFIEWLNGWVSNI----PSVVVSY 136

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D      +       +  + I+   I +FF  +D       +  +    F    K I  
Sbjct: 137 FDTAVSGLTSVFSTVSNVVVVIVTFPIIVFFLLKDDEKFFNYVLKIIPPKFRKDTKNIFA 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + S   G  +I++  G+++   + + G+     L ++    +++P          
Sbjct: 197 TINEQVGSYIKGQLLISLSLGIMMFIGFTVIGLEYSGILAIVATFTSIVPYIGAALAMIP 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    + F    L +   +  F+    + P ++G  + +  L     L+     +G 
Sbjct: 257 AVIVAFTISWFMVLKLIIVWVVVQFVDGNLIEPNIMGKNLNVHPLTIIIVLLVLGDLLGF 316

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           +GL +G  + A+  V+        K+ 
Sbjct: 317 VGLILGVPIYAISRVLVTFVFRKFKQR 343


>gi|311069610|ref|YP_003974533.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
 gi|310870127|gb|ADP33602.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
          Length = 388

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 112/333 (33%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    P++   I+ +   PI      + +    +  ++  + ++ L  + 
Sbjct: 42  FIFTPIIVLLKTISLPIILTGIVFYLLNPIVDFLERR-KVKRIYSILLLYILIIGLITIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +             L        A +    ++S   +     
Sbjct: 101 IVSIIPFLKEQIMSLIDNLPRYVDIVEDQTAQLIGSDFVNQAQQTMNINISDLANKVSDQ 160

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  +    +  F      I +        +   LF+  +DG  +   +         
Sbjct: 161 AATIVNSTFTGVGNFIGAITEIVISIIT----VPFILFYLLKDGKKLPVYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L +I A  +++P  
Sbjct: 217 EQTFTVLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAIIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   I   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A++ VI        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVVKVITTHLFDWFK 369


>gi|270291074|ref|ZP_06197297.1| permease [Pediococcus acidilactici 7_4]
 gi|270280470|gb|EFA26305.1| permease [Pediococcus acidilactici 7_4]
          Length = 376

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 113/345 (32%), Gaps = 10/345 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+  +   F+   F P++ A  + +   P+    +     K   S T+  V+  V  + L
Sbjct: 32  FLFSLIGTFISTVFMPLILATFLYYMLHPLVKLLMKVHYKKFRISRTWAVVLVFVGFLLL 91

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +       + ++ +++  + +  +        L D                     
Sbjct: 92  IVWGISSFLPSLIDQISQMLGNLPMIAKKLQVAIPQLVDHSWLRKVD------FDPYLKN 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  +            +  + +I + I LF+  +DG+ +   +  +  
Sbjct: 146 LNNEIGQYAEQFLANMTNSIGNIIAALTNITVIVITVPIILFYMLKDGYKLIPTISRIVP 205

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   +   + S   G  I  I  G      Y +   P  + LGVI  I  +
Sbjct: 206 EHNRKSVLNLFYSMSDTLSSYISGQVIECIFVGTFTVIGYMIIHQPYGLVLGVIAGICNI 265

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I  +      + +   I   +    + P ++G  +++  L   
Sbjct: 266 IPYVGPYFGIFPSLLVAIAQSPEQVISVIIVVLIVQQVDGNLIYPNVIGKSLQIHPLTII 325

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L+   +  G+LG+ +     A++ V+          +++KI  
Sbjct: 326 ILLLVAGKLAGILGMILAVPTYAIVKVLINFIHHIWVLDRDKIEE 370


>gi|331269591|ref|YP_004396083.1| hypothetical protein CbC4_1407 [Clostridium botulinum BKT015925]
 gi|329126141|gb|AEB76086.1| hypothetical protein CbC4_1407 [Clostridium botulinum BKT015925]
          Length = 369

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 107/340 (31%), Gaps = 3/340 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +IL  L  +     P + A  I +   PI      K + + T   +   + ++ L  +  
Sbjct: 31  VILKILGDVINILMPFIVAFAIAYILNPIMKFIEKKLKVNRTISVLFTYILIIILITIFS 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +         ++V K+    Q       W++        +      +       I   
Sbjct: 91  MTVIPKVFNSGMDMVDKMPEFAQKM---YSWVNSHISSKLMNSGSGNFVRDNAGKWIEKF 147

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + + +  +              +++   +I  I  L+   +   +    +  L    +  
Sbjct: 148 SAISSTWLAVALNQIVSTTTSLINFVFGLIISIYMLYDKEKFKQNSKNLVYILLSEKWGN 207

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               ++R V +++ +      I +   G++      L   P  + + +I  +  MIP   
Sbjct: 208 KLINVARNVDEMVGTYIGIKAIDSFIIGIICFVGLMLFKCPYVLIISIIVMVTNMIPYFG 267

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P         + +  +   A  + ++  +        L P LV   + +       G+  
Sbjct: 268 PFMGMIPPFLINVFYDPKKAFGILIFLVLLQQFDAWILEPKLVSDRVGVSPFLVILGITV 327

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G++G+ +   +MA++ +          +   K   
Sbjct: 328 FGSLFGIIGMLLASPIMAVLNIYVGGWFRRKVQEFNKTKE 367


>gi|170742961|ref|YP_001771616.1| hypothetical protein M446_4853 [Methylobacterium sp. 4-46]
 gi|168197235|gb|ACA19182.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 361

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 92/348 (26%), Positives = 163/348 (46%), Gaps = 4/348 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-SKKEESST 60
           RE           +++ +  V L+ L  F   ++ A+I+    WP+Y+      +   + 
Sbjct: 11  REPDSFHAAARVALVLGLAAVGLWTLHEFLPALVWAVILAIALWPLYARIAGRHRAGRTI 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               + T+    + +VPL  L      E ++++       + G PVP +++ +P G    
Sbjct: 71  LWPALFTLGAALVVLVPLAVLAVQAAREARDVLHFWRQIEEQGWPVPDFVARLPFGASQV 130

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W +      +        L       +      FG   +   +   F ++ LFF +RD
Sbjct: 131 ASWWQDTLSHPAGSSELLHRLDR---SSLLGVGRSFGGQIVHRAMLFGFTLLTLFFLFRD 187

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +++ Q  +    LF    ++++  +   +  T  G+ ++ +GEG++LG  Y  AGVP 
Sbjct: 188 GPALAGQALAACRRLFGPRGERVAHQMAASVHGTVDGLVLVGLGEGVLLGIVYAFAGVPH 247

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LG  TA+ AMIP  AP+ F   +     +G++  A  + + G +  F+ D  +RP L
Sbjct: 248 PVLLGAFTALAAMIPFAAPVVFALAAALAAAQGSLVAAAVVVVAGFVVTFVADHFVRPAL 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +GG  +LPFL    G++GGV T GLLGLF+GP +MA + ++W+E    
Sbjct: 308 IGGATRLPFLWVLLGILGGVETFGLLGLFLGPAIMAALVLLWREYTEG 355


>gi|145221061|ref|YP_001131739.1| hypothetical protein Mflv_0457 [Mycobacterium gilvum PYR-GCK]
 gi|315441968|ref|YP_004074847.1| permease [Mycobacterium sp. Spyr1]
 gi|145213547|gb|ABP42951.1| protein of unknown function UPF0118 [Mycobacterium gilvum PYR-GCK]
 gi|315260271|gb|ADT97012.1| predicted permease [Mycobacterium sp. Spyr1]
          Length = 383

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 108/352 (30%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +L  +  L+    PV  A II     P+      +          +  +
Sbjct: 28  RLLVIFAAIVTLLWLVLRLEILVVPVALATIIAALLLPVVDFLDRR-GAPRGGAVALVLL 86

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   LF   L F+    +    +LV +V  + +              G W ++   +   
Sbjct: 87  TGFALFGGLLAFVVTQFVEGAPDLVGQVSTSIEGV------------GKWLTDGPLQVSD 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +      +  + +   A        +     + +   L F    G +I   +
Sbjct: 135 QQINQARDTAIEALQSNQEKLTSGALSTAGTLTEIVTGALLVFFTLIFLLHGGRNIFSFV 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +             R   + +        ++A  + + +G    + GVP  + L  + 
Sbjct: 195 TRIFPSHVRGRVHDAGRAGFRSLIGYVRATFLVAAVDAIGIGVGLAIMGVPLALPLASLV 254

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    + +     I  LI      A            +    L+P ++G  + +
Sbjct: 255 FMGAFVPLVGAVVTGFLAVIVALIAKGWIYALITLGLIIAVQQLEGHVLQPLVMGRAVAI 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     + GG    G++G  +   ++A +    +         +E+    
Sbjct: 315 HPLAIVLAIAGGAVLAGIVGALLAVPVLAFLNSAIRVLTADDPVAEEQAMEE 366


>gi|220931418|ref|YP_002508326.1| predicted permease [Halothermothrix orenii H 168]
 gi|219992728|gb|ACL69331.1| predicted permease [Halothermothrix orenii H 168]
          Length = 351

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 117/348 (33%), Gaps = 9/348 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++      +  +  +++  I+  +  +K    P +    + +   P+ +    K+  S  
Sbjct: 2   LKRYKNELKIGIMLLVLGGIIYFILLIKKVLLPFVFGTFLAYLFNPLITFL-RKRNISRI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  + V+ LFI   +F+    + E++EL   +            +++     +   
Sbjct: 61  TALYILILVVLILFISISIFILPIFIRELEELTVTLPKYVNSLEKYVEYVNREYRRIHLP 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+  + +    +           N    +    +    +F+   ++         +  +D
Sbjct: 121 EVIKEVIDQALAKLENFILNFIENLTTSVINSLTYIVSLFISPIITY--------YILKD 172

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I     ++    +     K  R + K+      G   ++I  G+       L  V  
Sbjct: 173 YEEIQSSFLNIVPKKYRKPVLKSGREISKIFVGFLRGQIWVSIIVGVFSTLGLMLFKVKF 232

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           ++ LG++  I  MIP   P+     ++ +    +   A  + +  ++   +    + P +
Sbjct: 233 YLLLGILAGITNMIPYFGPVIGAIPAVMIAFLSSPVKAFGVIILFSLIQQVESSIIGPKI 292

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L   F L+ G       GL     +   + VI+K  I  
Sbjct: 293 FSNRVGLHPLTIIFVLLAGADIFDGWGLIFAVPVAGSLKVIFKIFIEQ 340


>gi|293365275|ref|ZP_06611992.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307703816|ref|ZP_07640757.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291316725|gb|EFE57161.1| membrane protein [Streptococcus oralis ATCC 35037]
 gi|307622651|gb|EFO01647.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 369

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 108/337 (32%), Gaps = 6/337 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + P+ +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPVVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+            +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLTSLIISSQNIYSRLQDLIIDLSMNPVFQNID------IQQTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 143 YVDILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTILKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLSSLLTNLNTTIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       +   +  +         +  I   I    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMVIANVFTDPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G++G+ +     ++   I K      + +KE
Sbjct: 323 LSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|78043486|ref|YP_359395.1| hypothetical protein CHY_0537 [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995601|gb|ABB14500.1| putative membrane protein [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 351

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 107/332 (32%), Gaps = 9/332 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +R   + + L+  Y ++  F P + A  + +           K + +  F   +  + +
Sbjct: 9   FLRVAGIVVALIFFYRIRAVFFPFILAGFLAYLLHWPVEWLERK-KINRGFGIFLLYLVL 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +   F     + ++ EL++ +                            K L   
Sbjct: 68  GIMIFLITKFFLPSFIKQINELIAVLPGYLNQVQEFLDRQQAGIDRGSLPPEIKKSLLIQ 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                          +  I +           +    +   I  ++  +D  ++ + +  
Sbjct: 128 IDSLEK--------SVAGILKSLLATLWGISSHLFDFLLAPILAYYILKDVHNLKKNILG 179

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                F        ++   V      G  +I +  G++ G   ++  +P    LG++  I
Sbjct: 180 YLPVDFRDEAIIFLKVCDHVFGRFIKGHLLICLTVGILTGLILYILKIPYSFLLGLLAGI 239

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           M ++P   PI  +   + L +           L   +   I    L P ++G  + L  L
Sbjct: 240 MELVPYFGPILASIPILALALLKGKVLFIKTLLAIVLIQQIEGNVLAPKILGDSLGLHPL 299

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              F L+ G    G+LG+ +   + A++  ++
Sbjct: 300 TVIFLLLCGFNLGGVLGMILAVPVAAVVRNLY 331


>gi|319647524|ref|ZP_08001744.1| hypothetical protein HMPREF1012_02783 [Bacillus sp. BT1B_CT2]
 gi|317390372|gb|EFV71179.1| hypothetical protein HMPREF1012_02783 [Bacillus sp. BT1B_CT2]
          Length = 353

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 116/348 (33%), Gaps = 5/348 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M+    ++     FI    +  ++    PV+   ++ +   PI      K      +  +
Sbjct: 1   MIGLNILVFTKASFIFTPFIVLVETIALPVVLTGVVYYLLNPIVDFLERK-NVKRIYSIL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + ++ L  + ++ +      ++  LV              + L          +   
Sbjct: 60  LLYIVIIGLITISIVSVIPLLREQITSLVDNFPRYVHIVEDQIKQLIGSQFFNQVQQTMN 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +L+   S      T +  +    +  F      + +        +   LF+  +DG  +
Sbjct: 120 INLTDLASKLSDQATTILNSTFTGVGTFIGAVTEVVISIVT----VPFILFYLLKDGKKL 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L           +   +   + S   G  I++   G +L   Y + G+     L
Sbjct: 176 PLFILKLIPVRLREQTYVMMSEMNHRLSSYIRGQIIVSFCIGCLLFIGYMIIGLDYASLL 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++ A  +++P   P      +I + +  + F    L +   +      K + P ++G  
Sbjct: 236 ALVAACTSIVPYLGPTIAITPAIIIALVTSPFMLVKLIIVWTVVQLFEGKFISPQIMGKN 295

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + +  +   F L+   +  G++G+ +     A+I V+        K+ 
Sbjct: 296 LHIHPVTIIFVLLTAAKLFGVIGVILAIPGYAVIKVVVTHLFEWFKQR 343


>gi|270264618|ref|ZP_06192883.1| hypothetical protein SOD_i00350 [Serratia odorifera 4Rx13]
 gi|270041301|gb|EFA14400.1| hypothetical protein SOD_i00350 [Serratia odorifera 4Rx13]
          Length = 356

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 116/356 (32%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+    + LYFL G   P+L A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQAIALLVILVAGFLILYFLHGILTPLLVAIVLAYLLEWPTARLQ-RIGCSRNW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +    + ++ +  +      +   L++ +             L      +    
Sbjct: 69  AASLVMIMFAGIAMLLVFVVAPTAWQQGINLMTDLPGMLNQFYNFAATLPKRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + + +FF  +D 
Sbjct: 125 ----VDAGIIDMMAENLRGRLSGMGESVVKFSLASLVGLLTLAIYLILVPMMMFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + +  +   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWIEMNQQITNYIRGKVLEMVIVGVATYLVFVILDMRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   + + +      A    L +   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVLVTIPVVVVAMFQWGVGADFWTLIVAYLVVQALDGNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  L     ++      G  G+F    L  L+  +       ++   E+
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDELRVETEQ 355


>gi|269926342|ref|YP_003322965.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790002|gb|ACZ42143.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 354

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 112/352 (31%), Gaps = 15/352 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           M   Q  +  +++ + L   Y    L       + A+I      P  +    K       
Sbjct: 1   MSAKQVFINTLVVLLTLAGAYLVIRLLDIIVLFVIAIIFASAISPAVAFLNRKLPL--GI 58

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  + ++ +F   L  +    + +   LV       +        L         + 
Sbjct: 59  SIAIVYLGIILVFAGILSLIIPTAVRQGMALVESGPDMVRAVERQIIELQQRFNIPVENL 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                  + + +          +    +        + F+    + + +++  F++  + 
Sbjct: 119 SGDLQEYYRRLI----------SSAPRLAAGILNVTLSFISGLGAFVAILVMAFYWLLER 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      L         + I   +   I +   G   + +  G+       + G+   
Sbjct: 169 RGVQSTWVGLASPSSRPEIRHIIDEIEAKIGAYARGQITLGLIVGIASFIGLTILGINYA 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L +I  I  +IP   PI     ++ + +  +   A  + L   I   + +  L P ++
Sbjct: 229 AILALIAGISELIPIVGPIVGAIPAVLIALSQSPKQAILVVLLYVIIQQMENHLLVPKIM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              + L  L   F ++ G   MG++G+ +   + + I VI   +++  +E  
Sbjct: 289 QRSVGLSPLTVLFVVLAGGSLMGIIGVLLAVPVASAIQVILSHTLLRREETD 340


>gi|83644526|ref|YP_432961.1| permease [Hahella chejuensis KCTC 2396]
 gi|83632569|gb|ABC28536.1| predicted permease [Hahella chejuensis KCTC 2396]
          Length = 361

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 133/337 (39%), Gaps = 5/337 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
                  +  FF  +  A ++     P++   I +        A++  ++ + + ++PL 
Sbjct: 18  TFGFGLLILPFFYAIFWAAMLAILFAPLHRWLIRRFPGRDNISALLTLLASLLIVVIPLA 77

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +      E   +  +V         +              +   +             +
Sbjct: 78  VMMTMLAKEGARVYQQVSSGEIQLQALVDKARATMP---VIQELAERFDIDLGNVKQMLS 134

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                G  F    A  FG  +L + +S + M+   FFF RDG S+ Q L      L    
Sbjct: 135 QAALTGSKFFATQAFNFGQEYLQFTVSFVLMLYLTFFFLRDGGSLIQLLIRALP-LGDTR 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA- 258
              + +   +V R+T  G  ++AI +G + G  +W  G+   +  GV+  +++++P    
Sbjct: 194 EMHLFQKFAEVSRATVKGNLVVAIVQGTLGGLIFWALGIKGALLWGVVMVVLSLLPAVGS 253

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + YL   G++F    L L+G   + +VD  LRP LVG   K+P        +G
Sbjct: 254 ALVWAPAAAYLFFSGDVFKGVVLVLFGFFVIGLVDNVLRPVLVGRDTKMPDYLVLLSTLG 313

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+   GL G  +GPVL AL    W+  +     N+EK
Sbjct: 314 GLSLFGLNGFVLGPVLTALFLAFWQIFMEEFNNNEEK 350


>gi|325479702|gb|EGC82792.1| putative membrane protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 402

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 45/365 (12%), Positives = 117/365 (32%), Gaps = 19/365 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKG-------FFAPVLSALIIGFTSWPIYSSFISKK------ 55
           +  +  +I+F        +K         F P +   +I +      + F  K       
Sbjct: 13  KITIYGIILFFAFWYFPVIKESIGKILLVFQPFIIGAMIAYIVSIPMNYFERKLSENFPD 72

Query: 56  ----EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
               ++       I+ + ++C+ ++ L  L    +  +    ++     +          
Sbjct: 73  AKHKKKIRGLSLFISWIIILCVVVLFLNILVPRIITVIISFFNRWPEFVRETYEALNKYD 132

Query: 112 DIPGGMWASELWTKHLSHPQ--SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
                      +    S  +  +  +   +  K+N +       +  G   ++     +F
Sbjct: 133 LTKPFADKFYEYVNSFSWFELRNRVLDFLSGNKSNILSVTTNVINSVGSSLVNIFTIFVF 192

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I  L +      + ++ + +L       Y  K+  +     +       I  +    + 
Sbjct: 193 SIFVLIYKDMLKVNGTKIMYALLSEKKADYLNKVFSLSYHTFKDYIFSRLIAVVTLSTLT 252

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
               ++  +P+   + +   +  +IP   PI    +S  ++   +   A    ++  I  
Sbjct: 253 FIGMFIMRMPNAGVISIFIGVSDLIPIFGPIVGAGLSAVIIFLESPVKALIFLIYDVIVQ 312

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I +  + P + G  I LP +     +  G    G+ G+ +   + ++I  ++ E I   
Sbjct: 313 QIQENIIYPAIAGEKIGLPAVWVLASITIGGSLFGIWGMLVSIPVASIIYTLFHEYIDNR 372

Query: 350 KENKE 354
            E K 
Sbjct: 373 LEKKN 377


>gi|311069224|ref|YP_003974147.1| putative permease [Bacillus atrophaeus 1942]
 gi|310869741|gb|ADP33216.1| putative permease [Bacillus atrophaeus 1942]
          Length = 353

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 107/330 (32%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K    P++ A+ I +   PI      +     T   +I  +         L    
Sbjct: 35  FCLVVKSILIPLIIAIFISYLLLPIIEWLH-RSGLPRTLSLLIIYLLFFGGIGYGLYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++ +L   +    +    +   L D           T         ++       
Sbjct: 94  PVLIEQLTDLSESIPGIAETYDGLLLKLHD----------HTDEWPDGIHSRMDRFIQRT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +        R      DY L    +   +F+  +D   + + +  L    +      
Sbjct: 144 EEFVAKTIEGTIRSIRFVFDYILIAATIPFLVFYMVKDIDLMKKTVWYLTPKSWRKRGSA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++    GL  G ++W   +P  + LG+I  +  +IP   P+  
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCFLIGLGAGVSFWFFDLPYPLILGLIIGLTNVIPYFGPVIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ + +  +      + +   I  F+    L P +VG  +K+  +     L+ G   
Sbjct: 264 AVPALLIAMAVSAKAVITVVITILILQFLEGNILSPLIVGRSLKMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G++G+ +     A++ V+    +    E+
Sbjct: 324 AGIIGMIVAVPAAAVLKVMMIHFLRMRTEH 353


>gi|306825359|ref|ZP_07458699.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
 gi|304432297|gb|EFM35273.1| membrane protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
          Length = 371

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 109/337 (32%), Gaps = 6/337 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + PI +    + + +     ++   +++   +V 
Sbjct: 31  AIITPFVTVVNTIMIPFLLGGFFYYITNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVG 90

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+            +   LS  P            +        LS
Sbjct: 91  VVYLLPILINQLTSLIISSQNIYSRLQDLIIDLSMNPVFQNID------IQQTIQQLNLS 144

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 145 YVDILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGRKLLPMLERTVLKHDK 204

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   I     G+ I A+  G +    Y + G+   +   + + I  +IP  
Sbjct: 205 LNLSSLLTNLNATIARYISGIAIDAVIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 264

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       +   +  +         +  I   I    L P +VGG +K+  +     L+
Sbjct: 265 GPSIGLIPMVIANVFTDPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLLL 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G++G+ +     +++  I K      + +KE
Sbjct: 325 LSSNIYGVIGMIVAVPTYSILKEITKFLAKLYENHKE 361


>gi|160915476|ref|ZP_02077687.1| hypothetical protein EUBDOL_01484 [Eubacterium dolichum DSM 3991]
 gi|158432596|gb|EDP10885.1| hypothetical protein EUBDOL_01484 [Eubacterium dolichum DSM 3991]
          Length = 390

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 106/332 (31%), Gaps = 12/332 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPLLFL 81
              P +    I F        F +K                A+++ V  + +    L  L
Sbjct: 42  LLMPFILGFAIAFILNGPMMFFEAKLFGKLRCSKQVKRNLSALLSLVLFIAIVCFLLALL 101

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  LV              +  +          +   +        +   T  
Sbjct: 102 IPQLVESIASLVKSFPGYAADF----QVFAIDFMKEHDINVEIINKFISDYNIVGKLTEF 157

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+ +  + +   + G   L+  L II  +  +    R      +   ++       Y  
Sbjct: 158 VTSALPQMAKLTYQLGSTLLNVLLGIISGLYMMMDKERLLRYFKKLNYAIFPKNVAEYTH 217

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++     ++  +  +G  I ++  G++      L G P  + L V+  +  MIP   P  
Sbjct: 218 RLMLSSSQIFNNFIIGKAIDSLIIGILCYVGSILLGFPYAILLSVVVGVTNMIPVFGPFI 277

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I LL   +   A    L+  +        L P ++G  + LP +   F +V G  
Sbjct: 278 GAIPGIVLLFIIHPITAVYYALFILVLQQFDGNILGPLILGDKLGLPSIGILFSVVIGGG 337

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              ++G+FIG    A+I +  +E      E +
Sbjct: 338 LFNVVGMFIGVPCFAVIYMAVREWTHYRLEKR 369


>gi|146282661|ref|YP_001172814.1| hypothetical protein PST_2313 [Pseudomonas stutzeri A1501]
 gi|145570866|gb|ABP79972.1| membrane protein, putative [Pseudomonas stutzeri A1501]
          Length = 337

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 73/336 (21%), Positives = 142/336 (42%), Gaps = 3/336 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + L   + L  F+  V  A+I+     P+      +  +     A+   +  + + ++P+
Sbjct: 2   VSLAFGWILLPFYGAVFWAVILAIIFAPLQRYLYRRFSQRRNLTALFTLLVCLLVAVLPV 61

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    + E   L  ++         +   L ++       +L         S++    
Sbjct: 62  ILITGMLVQEGATLYKQIESGELDIGRLVSGLRELLPQSVQLQLQRFGFGDLDSMRERLA 121

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           +     G  F+   A  FG     + +S   M+  LFFF RDG  +  ++      L  A
Sbjct: 122 SGALE-GSQFLATKAFSFGQGTFQFLISFFVMLYLLFFFIRDGRELVARIRKAIP-LSDA 179

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++     +V+R+T  G  ++A+ +G + G  + + G+   +  GV+ A ++++P   
Sbjct: 180 QKRRLFNKFTRVVRATVKGNIVVAVTQGALGGIIFAVLGISGALLWGVLMAFLSLLPAVG 239

Query: 259 P-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             + +T V+IY L+ G I+    L L+G + + +VD  LRP LVG   K+P        +
Sbjct: 240 AGLIWTPVAIYFLMTGAIWQGVILTLYGVLVIGLVDNILRPILVGKDTKMPDYVVLISTL 299

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GG+   GL G  IGP++ AL    W       +   
Sbjct: 300 GGLALFGLNGFVIGPLVAALFISTWGLFTSPEEPPP 335


>gi|326406731|gb|ADZ63802.1| permease [Lactococcus lactis subsp. lactis CV56]
          Length = 390

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 105/327 (32%), Gaps = 6/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV+ A +  +   PI      K+        ++  + +  L    L+      
Sbjct: 53  FITVISLPVILAAVFYYLLNPIVDFLEKKRV-PRVVTIIVLFLIIAALIAWGLIVAIPNI 111

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +    S V             L+  P          +      +  I        N 
Sbjct: 112 ISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKAFSVNA 171

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +    S+   I +            LF+  RDG  ++  +  L  + +     K+  
Sbjct: 172 VTTLSHLISKTTSILISLI----VFPFVLFYLLRDGQRLNGFVTHLLPNDWRKETSKVLH 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + +   G  ++AI   ++      + G+   VAL +    + ++P          
Sbjct: 228 EINSQLSNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIP 287

Query: 266 SIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + + L  G       + +   IE  +  + + P ++G  + +  +   F L+   + +G
Sbjct: 288 MVIVGLAIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILG 347

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G+ +     A + VI        +E
Sbjct: 348 VWGVLLAIPFYATLKVIIVHVYEWYRE 374


>gi|32471020|ref|NP_864013.1| permease [Rhodopirellula baltica SH 1]
 gi|32396722|emb|CAD71687.1| predicted permease [Rhodopirellula baltica SH 1]
          Length = 412

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 113/328 (34%), Gaps = 8/328 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           MR   + ++L +LY+ +    PV +A+++  T  PI          S         + ++
Sbjct: 23  MRICAVMLVLYALYYARSLVIPVATAIVLYLTLRPIVRHAKRIGVPSPVGA-----IGII 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++ L    Y  +   KE +               +++D    +  +           
Sbjct: 78  AGILLTLGLGTYLVLEPAKETIGAAPQHLAVAKQKLSFITDRLKDVDQATEELAETEDVA 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           + ++ SE  +              +     +    +   I  L+F    G  + + +   
Sbjct: 138 AGEVASEKPVPVEIKQPTWTSGWSYLSGTGNVVSFLTICIALLYFLLATGDDLLRSVMRS 197

Query: 192 GEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +        ++   V + + S    ++ I  G G+ +    W+ G+PS +  GV+   
Sbjct: 198 LPNFSSRRKLVEVIENVQEGLGSYLAQVSAINAGLGVCVAVVMWMLGMPSPIMWGVMAFA 257

Query: 251 MAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
              IP    I+       + LL     + A  + L       +  + + P ++G  + + 
Sbjct: 258 FNFIPIVGAIAGALIIFFVALLNFEPTYYAFVVTLAFMTLTSLEGQFITPAILGRSMSMS 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            +  F  +V      G++G+F+   ++ 
Sbjct: 318 PVLVFLSIVVWGWMWGIMGVFLSVPILI 345


>gi|323495911|ref|ZP_08100979.1| permease [Vibrio sinaloensis DSM 21326]
 gi|323319127|gb|EGA72070.1| permease [Vibrio sinaloensis DSM 21326]
          Length = 361

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 139/357 (38%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+     K  +     +
Sbjct: 6   KITSSHWVLITALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWIERKLPKHPNLAS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           + + + +  + +VPLLF+F   + +       V     HG I        +  G+     
Sbjct: 66  LFSCIVLTFIIVVPLLFVFAAIVQQGSAFSQNVYQWVTHGGIQTIFEHPWVVKGLALVNT 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +              T     +   +++      ++ +    M+  LFF  RD  
Sbjct: 126 YLPFDTIQPQEIAQKVAQFATTFGSNLVGISAKILGDATNFLMDFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   K+   V +V +S  +G  + A+ +G   G   WLAG P   
Sbjct: 186 KIIGAIRHILP-LSRSQEDKLLDEVEQVSKSAVMGSFLTALAQGFAGGLGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   +IYL + G+   A  L +W    +  +D  LRPFL+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPATIYLFLTGDTTWAIFLAIWSIAVVGSIDNLLRPFLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       ++   +   N
Sbjct: 305 GSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQDFLSRQDQN 361


>gi|258541540|ref|YP_003186973.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256632618|dbj|BAH98593.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256635675|dbj|BAI01644.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256638730|dbj|BAI04692.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256641784|dbj|BAI07739.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256644839|dbj|BAI10787.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256647894|dbj|BAI13835.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256650947|dbj|BAI16881.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653938|dbj|BAI19865.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 402

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/346 (8%), Positives = 98/346 (28%), Gaps = 7/346 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + +    + +         V ++ ++                       ++  +
Sbjct: 63  RLAVMVVTVTAAGLFVSSGGAVVMVVFASALVAVVLHAAARVLSRLLHIPQWLSVMLFVL 122

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++    + +       M+++  L   +             L ++            H  
Sbjct: 123 VLVGALSLVVHVSGPELMVQLSHLHEAL-------TSERDALHNMLNSNPLGHAVLDHFP 175

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 ++ +    T+         +           +++ +IIA  +F       +  +
Sbjct: 176 RFLGGNMVPDGHAGTDNGMDFAGSMTNVLTSTFGSVGTMVVIIIAGVYFALSPHLYANGI 235

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    + +  + +       + +   G  +     G +  S   L G+P  + LG++ 
Sbjct: 236 LRITPVAYRSTMRTVLLTTGHALTAWVAGQMLDMTVVGCLTWSGLSLLGMPLALPLGLVA 295

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +   +P          ++ + +      A  +    A         + PF+    +++P
Sbjct: 296 GLANFVPYLGTFIGAVPALLIALSVGPREAMMVAGLYAAIQTFEGYVMSPFIQKRAVRMP 355

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              T          +G+ G      + A++  +       +  N+E
Sbjct: 356 PALTILSQTIFGAFLGMWGFIFASPITAVLLAVASRLSAPLPPNEE 401


>gi|302345184|ref|YP_003813537.1| hypothetical protein HMPREF0659_A5427 [Prevotella melaninogenica
           ATCC 25845]
 gi|302149106|gb|ADK95368.1| putative membrane protein [Prevotella melaninogenica ATCC 25845]
          Length = 374

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 117/361 (32%), Gaps = 16/361 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+T+   + I   +I   +L   +    L     P   A +I +  +PI      K   
Sbjct: 1   MRQTITFDKFIRWALIALAVLAVGFIINALSEVLLPFFIAWLIAYLLYPIVKFVQYKLHI 60

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I  + V  LF    +F+    + ++ + ++ V              + I   
Sbjct: 61  PGRALSIIITFILVAALFTAIFMFIVPPMINQVDKFMTIVNRYLHETTHTNDIATMIQKW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +                   L   ++    ++  FF
Sbjct: 121 IRENQTEIERFLKSSDFTNTIKTAMPKLFS------VIGQTASILISIIASCITLLYTFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   ++     +       +W  ++    + + +   G  ++++  G++    + + 
Sbjct: 175 ILLDYEVLTNNWIKIFPKNVRPFWAGLAEDAERELNNYIRGQGLVSLCMGILFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELF 290
             P  + +G++  I+ ++P     +    +   L       +          +  A+   
Sbjct: 235 DFPMAIGMGILIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFASALIVFAVVQL 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL I   L  LI   W+  +    
Sbjct: 295 LMDMVITPKVMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEG 354

Query: 351 E 351
           +
Sbjct: 355 D 355


>gi|268609433|ref|ZP_06143160.1| hypothetical protein RflaF_08041 [Ruminococcus flavefaciens FD-1]
          Length = 410

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 119/344 (34%), Gaps = 11/344 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVS 69
           +L  +    G+F+ V+    I +   P+   +  K               +F   +A  +
Sbjct: 35  VLGGIGTFIGYFSTVIGGAAIAYLMNPLAKLYEKKIFSKIKFFKKDTTKWSFSVGLAVTT 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+   ++ ++ L    +  +   VS +       + +             +      L+ 
Sbjct: 95  VLLFLMMIIITLIPQLLESITNFVSNLGSYASSLLKLLNDFGLSFSESPNASGVQNLLNS 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + +      ++ ++    I   ++  G   +++ ++ I  +  L    R      + ++
Sbjct: 155 SEDIINTIVDYI-SDNSSKIISASTSAGKGVVNWLVAFIISVYLLAAKDRLKTGAKRFMN 213

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +  +                ++    +   I  +  G        L G+     + V+  
Sbjct: 214 AAMKKDVYDSSLTFLTRCNDILNRYIIFDLIDGLIVGATNAVFMALFGMQYVGLVSVVVG 273

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  ++P   P+    + +++L+    ++A    ++  +   +    ++P L G    +  
Sbjct: 274 VTNLVPTFGPLVGGVIGVFILLMVKPWHAVIFLIFTLVLQTLDGYVIKPKLFGNTFGVSG 333

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L     +V G +  G+LG+ +     A+   +++E ++   E K
Sbjct: 334 LLILLAIVIGGKMFGILGILLAIPFAAICDYVYREIVIPQLEKK 377


>gi|163840200|ref|YP_001624605.1| hypothetical protein RSal33209_1455 [Renibacterium salmoninarum
           ATCC 33209]
 gi|162953676|gb|ABY23191.1| membrane protein, putative [Renibacterium salmoninarum ATCC 33209]
          Length = 418

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 113/338 (33%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I   +      +      +L+AL I     P+      + +       V+A V + C   
Sbjct: 92  IAIGLYFVAVNITQLLVWMLTALFIALGLDPVVRWLEKR-KIPRPAGIVLALVVLFCAIA 150

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L    + +  +LV +     +  +             +   + ++     +  + 
Sbjct: 151 GFFSTLIPTIVEQTTQLVQQAPTLIKDFLNW----------DFFVSIDSQFHVRDRISEE 200

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           +++ F  +  +  +       G    +     + +++   +F     S+ +    L    
Sbjct: 201 VTKFFADSQAVGGVFGGVVGVGSTIANGLFGTLIVLVLSLYFLASLPSMKRWAYRLAPRS 260

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + +S  + + + +  +G   +AI   +       + GVP  + L  + A++A +P
Sbjct: 261 RRLRVEALSEQITRSVGNYVIGQACVAILNAVFAFVVMSIVGVPYSILLAFVVALLAFVP 320

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +    +   + +  +        +     L      + P ++   + +P       
Sbjct: 321 LVGGLIAGVLVSLVALTNSWQTMVIYAVLYFAYLQFEAYFVSPRIMQRAVAVPGAVAVIS 380

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++ G   +G+LG  I     A I ++ KE  +A ++ +
Sbjct: 381 VIAGGSLLGVLGALIAIPTAAAIMLLIKEIFLARQDRQ 418


>gi|315645819|ref|ZP_07898940.1| hypothetical protein PVOR_10134 [Paenibacillus vortex V453]
 gi|315278580|gb|EFU41894.1| hypothetical protein PVOR_10134 [Paenibacillus vortex V453]
          Length = 355

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 117/342 (34%), Gaps = 13/342 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
             W++  + L    FLK   AP L A+II +   P+      + +   +   +I     +
Sbjct: 25  FVWLLRPLFLDVYRFLKAVLAPFLVAMIISYVLNPVVCMLSDR-KVPRSMAVLIIYAVFL 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               V L+ +    + +++EL   +     +   +   L                    +
Sbjct: 84  TSLAVILINMIPMLIRQLEELNEHLPELTMNAQSLMTNLDSRLLPPGVRTGMNSWFFQME 143

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S      T    N  + I            +   +++ +   +F+  +D     +   S 
Sbjct: 144 SRLAGGITAFMDNIGNTI------------NILFNVLIVPFLIFYILKDFEVFQRTAVSY 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      + + +   + +   G  ++ +  G++    Y + G+P  + L  I A+ 
Sbjct: 192 LPRSHRKSIVMLLKEIDTALGNYVRGQFLVCLIIGVLAYVGYIIVGMPYALLLASIVAVF 251

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P    A ++ +    +      + +   I   +    + P +VG  + +  L 
Sbjct: 252 NIIPYLGPFLGAAPALVMASTISWKMVLLVVVVNMICQTLESNVISPQVVGKKLHMHPLL 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F L+ G +  G +GL +   + A+I V+ +         K
Sbjct: 312 IIFALLVGGQLAGTVGLILAVPVFAVIKVLLQHFFAYYVRRK 353


>gi|125717282|ref|YP_001034415.1| permease, putative [Streptococcus sanguinis SK36]
 gi|125497199|gb|ABN43865.1| Permease, putative [Streptococcus sanguinis SK36]
          Length = 360

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 112/337 (33%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---SKKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A +  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLGKCRVPQKLQRGLALILEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A        +   I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQLVQLIEGNIIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|114332236|ref|YP_748458.1| hypothetical protein Neut_2276 [Nitrosomonas eutropha C91]
 gi|114309250|gb|ABI60493.1| protein of unknown function UPF0118 [Nitrosomonas eutropha C91]
          Length = 363

 Score =  130 bits (327), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 124/354 (35%), Gaps = 8/354 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + +      ++ I+   +Y L     P L A  I +   PI +    + +   T  
Sbjct: 4   KYSPDSRFFWYLALIGIVSALIYLLSPILTPFLLAAGIAYICNPIVTWLEVR-KVPRTLS 62

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V   +  + +FI  +L +      E+  L+ ++                IP       +
Sbjct: 63  TVFVMLMAIGIFITMILIMLPLFEKEISRLIERIPSFLDMLSNRL-----IPWVEGVFNI 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +         +                     G++ L + +++I + + LF+  RD  
Sbjct: 118 ELQIDVDMLKDLLAEHWQSAGGVAARALPTLKSGGLVILGFLINLILVPVVLFYLLRDWN 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +Q   L    +      +SR    V+     G   +     +   +  WL G+   +
Sbjct: 178 ILIKQAGELIPPAWQKQIFTVSREADDVLAEFMRGEIAVITIMSIYYVTGLWLVGLEFSL 237

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE--LFIVDKTLRPFL 300
            +G+++ ++  +P    I+   ++ +  +      ++ + +W  I     +    + P L
Sbjct: 238 PIGLLSGVLVFVPYLGTITGLTLATFAALTQFQEWSSIIIVWVVIGSGQLLEGMLITPRL 297

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           VG  I L  +   F L+   +  G +G+ +   + A++ V+ +       E  E
Sbjct: 298 VGERIGLHPVAVIFSLMAFGQLFGFIGILLALPISAILLVLLRHLHTQYMEVME 351


>gi|313902386|ref|ZP_07835789.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467317|gb|EFR62828.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 422

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 112/335 (33%), Gaps = 9/335 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +    ++   L  LY L+G + P + AL++ +   P      ++         ++  
Sbjct: 7   RRILGGAALIAAGLGLLYLLRGTWPPFVLALVLTYLLAPAVDFLEAQ-GLRRATAILLLY 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +     V L++L    + E+  L +++    +    +   +              + L
Sbjct: 66  LLITLAAAVALVYLLPGFLDELNRLGTQLPGYARRLRLLVEGVRQDAARATLPATVRQAL 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      T    +    +         + L   L+         +   D   + + 
Sbjct: 126 LQQIDRTEGWVTARLADLTGGLVEGLLGAAPLLLAPVLAF--------YLLDDLPRLRRW 177

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                       W ++ R V +V+     G  ++A   GL++ +     G+   V LG +
Sbjct: 178 AQDRLGRGHRRRWLELVRAVDQVVGGFIRGQLLVAGFVGLMVTAVATFFGLRFAVLLGAL 237

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            A+  +IP   PI      + +    +   A  + +   +  ++ +  L P ++G  + +
Sbjct: 238 AALADLIPYFGPIIGAVPVLAMAALHSPATAIKVAVALVLVQWVENSVLSPRILGQRVGV 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L     L+ G    GL GL     +  L  V+ 
Sbjct: 298 HPLVVISALLVGGHHFGLAGLLFAVPVAGLAHVLL 332


>gi|170721039|ref|YP_001748727.1| hypothetical protein PputW619_1855 [Pseudomonas putida W619]
 gi|169759042|gb|ACA72358.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 354

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/346 (20%), Positives = 148/346 (42%), Gaps = 4/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +T L  + +   ++  + +   + L  ++  +  A+I+G    P+  + + +      
Sbjct: 1   MNQTALQNKALA-VLLALVTIAFGWILLPYYGAIFWAVILGILFAPLQRNLLMRFGRRRN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A    +  + + I+P++      + E   L  ++               ++       
Sbjct: 60  LAAATTLLICLLVAILPVIITSALLVQEGATLYQRIESGQLDIAGYVERGMNMLPPFMQH 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L +  + + + L+     +  T G   +   A  FG    ++ +S   M+  LFFF R+
Sbjct: 120 SLDSMGMGNLEGLRDKITKW-ATQGSQILATQAFSFGQGTFEFLISFGIMLYLLFFFLRE 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++      L     +++     +V+R+T  G  ++AI +G + G  +W+  +PS
Sbjct: 179 GADVARRVRLAVP-LPEHQKRRLQLKFNRVVRATVKGNVLVAITQGALGGFIFWVLDIPS 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+ A ++++P     I +  V+ Y L+ G I     L  +G + + +VD  LRP 
Sbjct: 238 ALVWAVMMAFLSLLPAVGAGIIWAPVAAYFLLTGAILQGVILTAFGVLVIGLVDNLLRPI 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   ++P        +GG+   GL G  IGP++ AL    W   
Sbjct: 298 LVGKDTRMPDYLILVSTLGGLAVFGLNGFVIGPLIAALFMSSWGIF 343


>gi|323127491|gb|ADX24788.1| hypothetical protein SDE12394_06650 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 393

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 113/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F      P++ + I+ + + P+    I+    S T    I    ++ LF+
Sbjct: 43  ISFLFTPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPSRTTSIFIVFGLIILLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L++     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYIGKVNEEANKLLENEWLVSYKPQLQDMLANTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSGKMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRMPMARVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYSITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      I + +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVIIMAMVQGPLMLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     ++
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVVKELFDWYQK 373


>gi|304385354|ref|ZP_07367699.1| permease [Pediococcus acidilactici DSM 20284]
 gi|304328561|gb|EFL95782.1| permease [Pediococcus acidilactici DSM 20284]
          Length = 376

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 112/345 (32%), Gaps = 10/345 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+      F+   F P++ A  + +   P+    +     K   S T+  V+  V  + L
Sbjct: 32  FLFSPIGTFISTVFMPLILATFLYYMLHPLVKLLMKVHYKKFRISRTWAVVLVFVGFLLL 91

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +       + ++ +++  + +  +        L D                     
Sbjct: 92  IVWGISSFLPSLIDQISQMLGNLPMIAKKLQVAIPQLVDHSWLRKVD------FDPYLKN 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  +            +  + +I + I LF+  +DG+ +   +  +  
Sbjct: 146 LNNEIGQYAEQFLANMTNSIGNIIAALTNITVIVITVPIILFYMLKDGYKLIPTISRIVP 205

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   +   + S   G  I  I  G      Y +   P  + LGVI  I  +
Sbjct: 206 EHNRKSVLNLFYSMSDTLSSYISGQVIECIFVGTFTVIGYMIIHQPYGLVLGVIAGICNI 265

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I  +      + +   I   +    + P ++G  +++  L   
Sbjct: 266 IPYVGPYFGIFPSLLVAIAQSPEQVISVIIVVLIVQQVDGNLIYPNVIGKSLQIHPLTII 325

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L+   +  G+LG+ +     A++ V+          +++KI  
Sbjct: 326 ILLLVAGKLAGILGMILAVPTYAIVKVLINFIHHIWVLDRDKIEE 370


>gi|154243797|ref|YP_001409370.1| hypothetical protein Xaut_4931 [Xanthobacter autotrophicus Py2]
 gi|154162919|gb|ABS70134.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 351

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 135/341 (39%), Gaps = 3/341 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +      ++ + +  L+ L  ++  +L A+I+     P+               A +
Sbjct: 5   KIQEFAFLATLVLVTVAFLWLLSPYYGAILWAVILAILFDPLQRGLERWLGGRRNLAAAL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + ++ +C+ ++P   +      E   L +++         +   L  +        L   
Sbjct: 65  SVLACICVVVIPGTLILAALANEAASLYTRIGTREFDPGTMLAQLQGVLPSFVWRALAAL 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L     L+    +FL       +   A   G     + +S+  M+  LFF +RDG +++
Sbjct: 125 DLGDMAQLQTRLTSFLLE-FSQTLANRAIIIGQNTAQFVISLGVMLYLLFFLFRDGVALA 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L      ++      V+++T  G   IA  +G + G  + + G+ + +  G
Sbjct: 184 ASIRKASP-LGAHETDQLLEKFTSVVKATVKGNVTIAAIQGAIGGVTFGMLGIQAALLWG 242

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+ A+++++P     + +   + YLL+ G       L   G + +  VD  LRP LVG  
Sbjct: 243 VLMAVLSLLPAVGAGLVWVPAAAYLLLTGAYLKGAILLAIGTLVISTVDNVLRPALVGKG 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             LP        VGG+  +G+ G  +GP+++AL    W   
Sbjct: 303 TMLPDYAVLISTVGGLSLIGMNGFVLGPLIVALFVAAWSLF 343


>gi|282899240|ref|ZP_06307213.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195876|gb|EFA70800.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 359

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 108/337 (32%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ L+     + +A+++  T   +                 ++ +  +
Sbjct: 7   IGLIALVVSLYILWQLREVLLLIFAAVVLATTLNRLA-RTCQNLGIKRGLAVFLSVMFFL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     +    + + +EL  +V    +                    +   +    +
Sbjct: 66  VGIVAFFWVIVPPFVHQFQELTLRVPQGFERVNTWVDEQRSHIPQELEPVIPDLNRLIAE 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         I+ +   +  F    L   L+I+ +++    F  +  +  +    L
Sbjct: 126 ----------AQPLINRVLGNSFAFVSGSLVLVLNILLVLVLTAMFLTNPAAYQKLFVRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    + I       +     G  I     GL+      + GV + +ALGV+  +M
Sbjct: 176 FPSFYRRRVEGILNQCEDSLERWLTGAFIAVCVVGLMSLIGLSILGVKAALALGVLAGLM 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ + +  + +    + +       I    + P ++   + L    
Sbjct: 236 NLIPNLGPTMSVVPAMAIALLDSPWKPIFVLILYFFIQQIESNFITPMVMAHQVSLLPAV 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +  V   G LGLF+   L  +  +  +E ++ 
Sbjct: 296 TLISQLFFVTFFGFLGLFLALPLTVVAKIWIQEVLIK 332


>gi|260430970|ref|ZP_05784941.1| membrane protein [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414798|gb|EEX08057.1| membrane protein [Silicibacter lacuscaerulensis ITI-1157]
          Length = 357

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 113/342 (33%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   + +  L+ L     P +    I +   P+     S    S      I TV+ + LF
Sbjct: 14  IAAAVFVFLLWLLGDVLLPFVIGGAIAYFLDPVADRLES-LGLSRVAATGIITVAGILLF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +L +    + ++ +L+                                         
Sbjct: 73  VLMILMVVPALITQLIDLIDIFPSLFSQLRDFIER----------QFPSLLDDQSNTHQF 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +LS +         I +         ++  + ++ + +   +   D   +  +++ L   
Sbjct: 123 LLSLSDTLQGKTGDILKSVMASVGSAVNVIVLLVIVPVVAVYLLLDWDHMIARINDLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  +  V+ S   GM  + +  G     A  L G+   + +G I  ++  I
Sbjct: 183 DHAPTIRRLAGEIDAVLASFVRGMGTVCLILGTYYAVALMLVGLQFGLVVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   +++I L      G+  +   +    AI   +    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGSLAIGLALFQFWGDWTSIGLVAGIFAIGQVVEGNFLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + V+ + +      ++
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAASLGVLARFATSQYLTSR 344


>gi|253574904|ref|ZP_04852244.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251845950|gb|EES73958.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 341

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 110/335 (32%), Gaps = 13/335 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +  +   FLK  FAP + A+II +   PI      ++    T   ++     +    V L
Sbjct: 18  MFALVYRFLKAVFAPFVIAIIISYVLNPIVRMLGGRRV-PRTMAVLLIYAVFLTGLCVVL 76

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    + +++EL   +     H   +     +                  ++    + 
Sbjct: 77  MNVIPMFVEQLEELGEHLPELTLHTQQMMNRWDNGILPGSIRMGMNNWFYQFENRLASAI 136

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           +    N    I                +   +   +F+  +D   I + +          
Sbjct: 137 SGFLDNIGTTI------------GVVFNAFIIPFLIFYMLKDIELIERLILQYLPRSRRK 184

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               + + +   + +   G  ++ +  G++    Y L G+P  + L  + A+  +IP   
Sbjct: 185 SIITLLKEIDMALGNYVRGQLLVCVIIGVLAYIGYMLIGMPFALLLAGVVALCNIIPYLG 244

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A ++ +    +      + L   +   I    + P +VG  + +  +     L+ 
Sbjct: 245 PFLGAAPALVMATTISWKMVLLVLLVNMLCQTIESNVISPQVVGRSLHMHPMLIILALLI 304

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G    G+ GL +     A++ V+ +         K
Sbjct: 305 GGELAGVPGLILAVPFFAVVKVVIQHFYAYYVRRK 339


>gi|325128242|gb|EGC51127.1| putative membrane protein [Neisseria meningitidis N1568]
 gi|325134534|gb|EGC57179.1| putative membrane protein [Neisseria meningitidis M13399]
          Length = 344

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 121/337 (35%), Gaps = 8/337 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
                ++  ++ L     P   A ++ +   P+      K   +    ++   V  + L 
Sbjct: 5   AAFAALVWLVFALGDTLTPFAVAAVLAYVLDPLVEWLQKK-GLNRASASMSVMVFSLILL 63

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  LL +    + +   L S++                +P        + +         
Sbjct: 64  LALLLIIVPMLVGQFNNLASRLPQLIGFMQNTL-----LPWLKNTIGGYVEIDQASIIAW 118

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + + T   +N +        R G   +    +++ + + L++F  D    S  +  L   
Sbjct: 119 LQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPR 178

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F   + +I+  + +V+     G  ++ +  GLV G    L G+ S  A+G++  I+  +
Sbjct: 179 RFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFV 238

Query: 255 PGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P     +   ++        G+      ++   A+  F+    + P +VG  I L     
Sbjct: 239 PYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWV 298

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 299 IFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 335


>gi|75761648|ref|ZP_00741597.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228902918|ref|ZP_04067059.1| hypothetical protein bthur0014_40860 [Bacillus thuringiensis IBL
           4222]
 gi|74490869|gb|EAO54136.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228856702|gb|EEN01221.1| hypothetical protein bthur0014_40860 [Bacillus thuringiensis IBL
           4222]
          Length = 361

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGCGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVI 349


>gi|325661882|ref|ZP_08150503.1| hypothetical protein HMPREF0490_01241 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471860|gb|EGC75077.1| hypothetical protein HMPREF0490_01241 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 463

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/387 (11%), Positives = 113/387 (29%), Gaps = 28/387 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-----------LKGFFAPVLSALIIGFTSWPIYS 49
           +++ +         +   I+    +            +     P++   ++ +   P+  
Sbjct: 34  LQQHLNRGMTAFLVVAASIVFYFAFLRFGHISGVLGKIFQILKPIIYGFVLAYLLNPLMK 93

Query: 50  SFI---------------SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
                               K+ +       A +    L +     +       ++ +V 
Sbjct: 94  MVENFIVKLLKGKIKKEERLKKFARGVGIFTALLFAGALIVALCNMILPELYRSIRNMVY 153

Query: 95  KVVLANQHGIPVPRWLS--DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            V       +     +   D    +    + T+  +  ++             I  +   
Sbjct: 154 TVPEQLNEWMERLSEMEFDDSTLALITKNVLTETTAFFENWIRSDLLRQINIWISGLTEG 213

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   ++  + II  +  LF          + + ++ +         I+R   K+  
Sbjct: 214 VISVVNELMNIVIGIIVSVYVLFSKETFAGQSRKVVYAVLKPEKANLVLHITRKSNKIFG 273

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
              +G  I +   G++      +  +P  + + VI  +  +IP   P      S  LL+ 
Sbjct: 274 GFIIGKIIDSAIIGVLCFIGLSILDMPYTLLVSVIVGVTNVIPFFGPYIGAIPSAILLLL 333

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +        ++      +    + P ++G    L      F ++ G    G  G+ +G 
Sbjct: 334 TDPIKGLYFLVFIIFLQQLDGNIIGPKILGDSTGLSAFWVVFSILLGGGLFGFAGMIMGV 393

Query: 333 VLMALIAVIWKESIMAIKENKEKISSN 359
              A+I  +++  I    E K   + +
Sbjct: 394 PTFAVIYYLFQMFINQNLEKKHLPTDS 420


>gi|167032277|ref|YP_001667508.1| hypothetical protein PputGB1_1265 [Pseudomonas putida GB-1]
 gi|166858765|gb|ABY97172.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 357

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 125/352 (35%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +      +I V LY L     P L  +++ + + P+      +   S T+  V
Sbjct: 1   MTDMRRWIWLGAALLIAVLLYSLHNILTPFLVGILLAYLADPLVDRLE-RLGLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +  LL L      ++  L             V    +    G+       
Sbjct: 60  VVFGLFTLVLLALLLVLVPMLAKQLVRLYELAPQMLDWLEQVALPWAQSRLGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +         +     T+ +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAIG----AHMGQTTDIVGMLLSHATASSLALMAWLANMVLIPVVGFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L  L           ++    +V+ +   G  ++ +  G++  +   L G+   + +
Sbjct: 176 MGKLRGLLPRQREPQVMGLAGECHEVLGAFVRGQLMVMLALGIIYSAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++  + A++P    I     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GMLAGLAAIVPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      KE+ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHMHDLYKESD 347


>gi|317125914|ref|YP_004100026.1| hypothetical protein Intca_2798 [Intrasporangium calvum DSM 43043]
 gi|315590002|gb|ADU49299.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 419

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 38/331 (11%), Positives = 94/331 (28%), Gaps = 15/331 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L    G    ++ A +      P  +               I     +      +   
Sbjct: 62  FVLADAGGVIFTLILAFLASIAMEPAVARLSQSM--QRGLATAIVMFGSLLALAAFIFVF 119

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 ++      V    +                                ++   T  
Sbjct: 120 GRLLSDQIGTFAESVPALVEDLTKWAS-----------ERFGIDLDYQKLLDRLGVGTST 168

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T     +      F +  +    S +      F+F  DG  + + +  L        + 
Sbjct: 169 LTTVAQNLAGGVLGFLLSVVAAAFSTLTFAFFAFYFSADGPRLRRWIGQLVPQRQQEVFG 228

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPI 260
               +  +          ++A   G +  +   + G+P  +ALG+ T ++A  +P     
Sbjct: 229 LAWDLAVRKTGGYVSARVVLAAINGGLTAAFMLVIGMPYWLALGIWTGVVAQFVPTVGTY 288

Query: 261 SFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              A+ + + + G+  +    +  +  +   I + TL P +    + +    +F  ++ G
Sbjct: 289 IAIALPVVIGLIGDQPWQGLAVLAFAVVYQQIENVTLEPRISASAVNVHPAVSFGAVLFG 348

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               G+ G F+   + AL+  ++       +
Sbjct: 349 ASLFGIGGAFVAVPVAALLLALFDIYSHKYE 379


>gi|291616655|ref|YP_003519397.1| YdiK [Pantoea ananatis LMG 20103]
 gi|291151685|gb|ADD76269.1| YdiK [Pantoea ananatis LMG 20103]
 gi|327393082|dbj|BAK10504.1| permease YdiK [Pantoea ananatis AJ13355]
          Length = 397

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/335 (18%), Positives = 128/335 (38%), Gaps = 3/335 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G    ++    +     L  +F+ +L A ++     P+      K  + +   +++  V 
Sbjct: 9   GFFLLILAMATIAFFEVLAPYFSAILWAAVLAVIFHPLKRYLRGKLGDRNGLASLLTLVC 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +   PL  +    ++E+  +  K+   +     V   L     G WA     ++   
Sbjct: 69  ICLIVFTPLAIIASSMVVEVNTVYHKLQTNSAQFPVVFADLLQHLPG-WAKHYLAENNLD 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +      +     G  ++   A   G     + +    M+  LFF  +DG  +   + 
Sbjct: 128 NATQIQQKLSAFALKGGQYLAGSAFIIGKGTFSFTVGFGIMLYLLFFLLKDGSYLVHLIL 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L       +      V R+T  G  ++ + +G++ G A+W  G+   +  G +  
Sbjct: 188 EALP-LSTYVKHHLFMKFAAVSRATVKGTVVVGVVQGILGGLAFWFTGIDGSLLWGALMG 246

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++++P     I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P
Sbjct: 247 FLSLVPAVGSAIIWVPATIFFFATGALWKGLFLVGFFVVVVGLVDNILRPLLVGKDTKMP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                   +GG+   G+ G  IGPV+ AL    W 
Sbjct: 307 DYLILITTLGGMEIYGINGFVIGPVIAALFIACWN 341


>gi|291526473|emb|CBK92060.1| Predicted permease [Eubacterium rectale DSM 17629]
          Length = 388

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 112/359 (31%), Gaps = 17/359 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------ 58
           +        I+  +  +     P++  +++ +   P+   +  K   S            
Sbjct: 32  VFVLFKFDAIMAQIVRIINILMPIIMGIVLAYLINPMVEFYDRKLSNSLGKAIEKKCGKR 91

Query: 59  ---STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   +I+   ++ + +V ++ +    +  +   VS +    Q  +     L+    
Sbjct: 92  PSMRGLSILISLAIIIAIIVVLIMMVVPQLVSNITNAVSLLPDQIQDLVKKITELAK--N 149

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
              A E+ T+  ++  S             + F+           ++  ++ I  I  L 
Sbjct: 150 NDRAKEIITELYNNGISYFTEWVKDNMLGQVTFVINGIMGIFGTAVNCLVAFIVAIYVLL 209

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                     + + +            I +   K+      G  I ++  G +      +
Sbjct: 210 SKDTFKRQTKKLVSAFLPERHIQVLSSILKESDKIFGGFISGKIIDSLIIGAICFVCCLI 269

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P    + VI  +  +IP   P      S  L++  +        L+  I   +    
Sbjct: 270 LRMPYVALISVIVGVTNVIPFFGPYIGAIPSTILIMLDSPSKGVIFLLFIIILQQVDGNI 329

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + P ++G    L      F +  G    G++GLFIG     ++  + K  +      KE
Sbjct: 330 IGPKILGESTGLSPFWVVFAIFLGNGLFGVVGLFIGVPTWGVVYYLIKRYVNYRVRKKE 388


>gi|160937037|ref|ZP_02084400.1| hypothetical protein CLOBOL_01926 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439938|gb|EDP17686.1| hypothetical protein CLOBOL_01926 [Clostridium bolteae ATCC
           BAA-613]
          Length = 397

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 101/329 (30%), Gaps = 8/329 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK-------EESSTFLAVIATVSVMCLFIVPLL 79
           L     P +    I F       +                    V+  + V     + + 
Sbjct: 38  LMHIVWPFILGAAIAFILNVPMRNIERHLTVFGQGSRLRRPVSLVVTILLVTGGLFLVIF 97

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQSLKILSE 138
            +    +     L S + +           L +  P  +        +        +   
Sbjct: 98  VVAPQLVKTFMNLQSSIPVFFAGVRDEAERLFASNPQILEYMNQMEVNWQEVFQNMVAFL 157

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  ++     A         + +  IF I  L      G  I + L++        
Sbjct: 158 KSGAGTMLNTTFSAAVSIVSGVSSFLIGFIFAIYILLQKETLGRQIKKVLEAFLPEPAVG 217

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               I+ +  +       G    A+  G +      +  +P  + +GV+ A  A+IP   
Sbjct: 218 RILDITALTERTFSHFLTGQCAEAVILGTMFFVVLTVIRLPYALLIGVLIAFTALIPIFG 277

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                AV ++L++  N  +A    +   +   I    + P++VG  + LP +     +  
Sbjct: 278 AFVGLAVGVFLMLLVNPMDALIFTITFFVLQQIEGNLIYPYVVGNSVGLPSIWVLVAVTV 337

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G   MG++G+ I   L +++  + ++ + 
Sbjct: 338 GGSMMGIVGMLIFIPLCSVLYALLRDGVN 366


>gi|220928624|ref|YP_002505533.1| hypothetical protein Ccel_1196 [Clostridium cellulolyticum H10]
 gi|219998952|gb|ACL75553.1| protein of unknown function UPF0118 [Clostridium cellulolyticum
           H10]
          Length = 349

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 118/350 (33%), Gaps = 13/350 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKG--------FFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+N + I+ ++I+ ++L+                  P   A +I +  +P+   F  K  
Sbjct: 1   MINTRKIIFYIILVLLLIGTAVFVYYYIDKLIKILLPFFIAALIAYIIYPLVIRFERK-G 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
              +   ++    +    I   +++    +   KEL   +                    
Sbjct: 60  IKRSVSIILVYFFIALTLIFFGVYIMPEVLNNGKELFKTLPSITSSYREYFNNCISRIKA 119

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                     + +  +             I       +   +I L+  LS+I       +
Sbjct: 120 SKWPPEVKNLIFNEINYGSGFLQVYAARIIKKTLSVLASSLVIMLNIILSMIIAY----Y 175

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F +D  ++      L             R +  +      G  + A+  G +     +L 
Sbjct: 176 FLKDAETLKNSALMLVPKKMRNDIINTGRELNAIATHFIQGQLMTALIVGTMETMGLYLV 235

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V    ALG++  +  +IP   P      +I + +  + + A    L   +   I +  +
Sbjct: 236 RVKYPFALGLLGGVANIIPYFGPFLGAIPAIAVALLQSPYKAALAALVFIVVQQIDNAFI 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            P ++ G + L  + T   ++ G    G++G+ IG  + A++ VI K+ +
Sbjct: 296 SPKIIEGKLGLHPVTTIIAVLIGGEFFGIIGMLIGVPVTAMLKVILKKVV 345


>gi|91789517|ref|YP_550469.1| hypothetical protein Bpro_3669 [Polaromonas sp. JS666]
 gi|91698742|gb|ABE45571.1| protein of unknown function UPF0118 [Polaromonas sp. JS666]
          Length = 390

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 112/350 (32%), Gaps = 17/350 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  + +   L  L++ K  F P++  L+  +   P+ +    K+       A
Sbjct: 30  PVDIRNVSLVILAVLASLFMLHWAKAVFIPLMLGLLFSYALSPVVNWLELKRVPRWLSAA 89

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG------- 116
           V+     +   +  +    Y    E  +L+  + LA Q      +  +  P G       
Sbjct: 90  VL-----LLAILGAIGSTAYSLRNEASQLLESLPLAAQKFRQAVKTRAGKPDGALENVQK 144

Query: 117 --MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 +   +  +        +   +       +  +     +  L        ++   
Sbjct: 145 AASQIEQAARESGTASPGSSRGAMRVVVETATFNVRDYLWTGTLGLLTLIGQFTVVVFLT 204

Query: 175 FFFYRDGFSISQQLDSLGE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +F    G +  ++L  L           +    +   I+       + +   G++   A 
Sbjct: 205 YFLMLSGDTFCRKLIKLAPGFSSKKITLQALHEITGQIQRYLQVQLLASALVGVLTWLAL 264

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFI 291
            + G+ +    G+   ++ ++P    +     S  +  L  G++  A  +         +
Sbjct: 265 LIIGLDNAAVWGIAAGVLNLVPYVGSLVTAGASGLVGFLQFGSLDMAIVVAGASLFIHML 324

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           V     P+L     +L  +  F GL+      G+ GL +G  ++ ++  +
Sbjct: 325 VGNLFTPWLTSRASRLSPVAVFVGLLAWGWLWGVWGLLLGIPILMIVKSV 374


>gi|119387710|ref|YP_918744.1| hypothetical protein Pden_4988 [Paracoccus denitrificans PD1222]
 gi|119378285|gb|ABL73048.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 347

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 136/338 (40%), Gaps = 3/338 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++   +  ++ +  F+  VL A+I+     P++              A+++ ++ +
Sbjct: 11  LVAVVLITTVALIWVVLPFYGGVLWAVILAILFSPLHDRLEHVLGGRRNLAALLSVLACI 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + ++P   +      +   +   V         V   +           L   +L   +
Sbjct: 71  FIVVIPATLILGALARQATSVYQSVSSQEPDLAAVMDQVRGAMPSFVLDALSAMNLGSFE 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            ++    +F+      FI   A   G     + + +  M+  LFF +RDG  +   + + 
Sbjct: 131 EIQSRLVSFVGQ-AAQFIASRAMVIGQGAAQFSIGLGVMLYVLFFLFRDGRGLVGSISAA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L   + + I +    V+++T  G  +IA  +G + G  +WL G+ + +  GVI  ++
Sbjct: 190 SP-LSAPHTRHIMQKFVDVVKATVTGNVVIATIQGTIGGVTFWLVGIEAALLCGVIMGVL 248

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P     + +   ++Y LI G       +   G + +  +D  LRP LVG    LP  
Sbjct: 249 SLLPAVGAFLVWLPFAVYYLITGAYLKGIVIMAVGVLVISTIDNLLRPPLVGRRSSLPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                 +GG+  MG+ G  +GP++ A    +W      
Sbjct: 309 VVLVSTLGGISQMGMNGFVVGPLIAAFFIAVWSLFRDE 346


>gi|84515334|ref|ZP_01002696.1| Lipocalin-related protein and Bos/Can/Equ allergen [Loktanella
           vestfoldensis SKA53]
 gi|84510617|gb|EAQ07072.1| Lipocalin-related protein and Bos/Can/Equ allergen [Loktanella
           vestfoldensis SKA53]
          Length = 367

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 118/355 (33%), Gaps = 28/355 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + M + LV L+ L     P +    I +   P+      +   S      I T+    +F
Sbjct: 14  IAMAVFLVVLWALGDVILPFVLGGAIAYLLDPVADRLQ-RAGLSRVLAVSIITLVAALVF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I+ +L +    + +   L++      +              G+ A              +
Sbjct: 73  ILLILLVIPTLVKQTTALINTAPALFERLQA----------GLTARFPDLIEPESTIRQQ 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +           +        M  ++  + ++ + +  F+   D  ++  ++DSL   
Sbjct: 123 LQAIGETIQARGGELINGVLSSAMGLVNIIVLLVIVPVVAFYLLLDWDNMIAKIDSLLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              A  + +   + + + S   G   + +  G        LAG+   + +G I  ++  I
Sbjct: 183 DHVATVRHLGSEIDRTLASFIRGQGTVCLILGTYYALGLMLAGLNFGLIVGFIAGLITFI 242

Query: 255 PGGAPISFTAVSIYLLIKGNIFNA-----------------TCLFLWGAIELFIVDKTLR 297
           P    +   A+++ L +                          +    A+  F+    L 
Sbjct: 243 PYVGALVGGALALGLALFQFWGAVELADGDTVTYATNWLRIGIVGAIFALGQFLEGNVLT 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P LVG  + L  +   F L       G +G+ +   + A+I V+ +  +   +++
Sbjct: 303 PKLVGSSVGLHPVWLIFALSVFGSLFGFVGMLVAVPVAAVIGVLIRYGLGQYRDS 357


>gi|261319296|ref|ZP_05958493.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
 gi|261298519|gb|EEY02016.1| conserved hypothetical protein [Brucella pinnipedialis B2/94]
          Length = 354

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 144/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 122 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G+  G  +WL G+ + +  
Sbjct: 182 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMNGGVTFWLLGIEAALLW 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 241 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 300

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 301 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 349


>gi|291526970|emb|CBK92556.1| Predicted permease [Eubacterium rectale M104/1]
          Length = 388

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 112/359 (31%), Gaps = 17/359 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------ 58
           +        I+  +  +     P++  +++ +   P+   +  K   S            
Sbjct: 32  VFVLFKFDAIMAQIVRIINILMPIIMGIVLAYLINPMVEFYDRKLSNSLGKAIEKKCGKR 91

Query: 59  ---STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   +I+   ++ + +V ++ +    +  +   VS +    Q  +     L+    
Sbjct: 92  PSMRGVSILISLAIIIAIIVVLIMMVVPQLVSNITNAVSLLPDQIQDLVKKITELAK--N 149

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
              A E+ T+  ++  S             + F+           ++  ++ I  I  L 
Sbjct: 150 NDRAKEIITELYNNGISYFTEWVKDNMLGQVTFVINGIMGIFGTAVNCLVAFIVAIYVLL 209

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                     + + +            I +   K+      G  I ++  G +      +
Sbjct: 210 SKDTFKRQTKKLVSAFLPERHIQVLSSILKESDKIFGGFISGKIIDSLIIGAICFVCCLI 269

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P    + VI  +  +IP   P      S  L++  +        L+  I   +    
Sbjct: 270 LRMPYVALISVIVGVTNVIPFFGPYIGAIPSTILIMLDSPSKGVIFLLFIIILQQVDGNI 329

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + P ++G    L      F +  G    G++GLFIG     ++  + K  +      KE
Sbjct: 330 IGPKILGESTGLSPFWVVFAIFLGNGLFGVVGLFIGVPTWGVVYYLIKRYVNYRVRKKE 388


>gi|154687227|ref|YP_001422388.1| YubA [Bacillus amyloliquefaciens FZB42]
 gi|154353078|gb|ABS75157.1| YubA [Bacillus amyloliquefaciens FZB42]
          Length = 386

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 113/333 (33%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    PV+   I+ +   PI      K      +  ++  + ++ L  + 
Sbjct: 42  FIFTPIIVLLKTIALPVILTGIVYYLLNPIVDILE-KIRVKRVYSILLLYLIIIGLITIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +           + L     G        K ++   S     
Sbjct: 101 VVSIIPFLKEQIMSLIDNLPKYVDIVEDQTKSL----IGSDFVNQAQKTMNINISDLANK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +       +        F     +  +SI+ +   LF+  +DG  +   +         
Sbjct: 157 VSAQAATIANSTFTGVGNFIGALTEVIISIVTVPFILFYLLKDGKKLPIYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTMLSEMNHRLSSYIRGQVIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSVVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + +  +      L +   +   +  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIALVTSPLMLLKLAIVWTVVQLVEGKLISPQIMGKNLHIHPITIIFVLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+I V+        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVIKVVTTHLFDWFK 369


>gi|295105497|emb|CBL03041.1| Predicted permease [Faecalibacterium prausnitzii SL3/3]
          Length = 420

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 113/351 (32%), Gaps = 16/351 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCL 73
           ++  L G   P +   +I +   P+ +S  +              +     +  +  + L
Sbjct: 41  AISTLTGILMPFIYGAVIAYLLKPVCNSIENFLRRFIPEKMNGLINALSVALTILFGLLL 100

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               ++ +    +  +  L           +     L  I      +EL     +   + 
Sbjct: 101 VYALVMMIVPQLITSVTTLYYTAQANITKFMNWANHLEFIEKNEQITELLNSAYAALNTN 160

Query: 134 KILSETFLKTNGIDFIPRFAS-------RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                T+LK   +  +    S           +  +  + II  +  L    R       
Sbjct: 161 LDTWNTWLKNTLLPSMQNIVSGAAIGVLNVVTVAKNLIIGIIVAVYMLASRKRFVQQGKL 220

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L S+    +     +  +   ++      G  + +   G++      +   PS + + V
Sbjct: 221 VLHSIVRPRWAQLITEEVKYADRMFGGFINGKIMDSAIIGVLCYIGCLIFKFPSALLVSV 280

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  +  +IP   P      +  L++  +   A    L+  +   +    + P ++G    
Sbjct: 281 IIGVTNVIPFFGPFIGAIPATLLILIQSPIKALWFVLFVLVLQQLDGNIIGPKILGNTTG 340

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L      F ++      G +G+ +G  L A+I  + K+ ++   +  ++++
Sbjct: 341 LSSFWVLFAILLFGGLWGFVGMIVGVPLFAVIYDVIKKLVIHGLQRHQELT 391


>gi|325688460|gb|EGD30478.1| toxin secretion/phage lysis holin subfamily [Streptococcus
           sanguinis SK72]
          Length = 360

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 113/337 (33%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---SKKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A +  + + ++
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLGKCRVPQKLQRGLALILEVLILVL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGVLVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A        +   I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQVVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + G    GL+G+     + A+I  + +E ++  +E K
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFVVEKEEKK 359


>gi|311113400|ref|YP_003984622.1| hypothetical protein HMPREF0733_11731 [Rothia dentocariosa ATCC
           17931]
 gi|310944894|gb|ADP41188.1| conserved hypothetical protein [Rothia dentocariosa ATCC 17931]
          Length = 440

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 104/338 (30%), Gaps = 8/338 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +   +   +      V  A+ I     PI     S      +   VI  +S   +  
Sbjct: 111 LALLAYYAFTNVGALVGWVTGAIFIALGLDPIVRKLES-FGVKRSAGVVIVVLSFAAIIS 169

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++++      +    V +     Q  I                ++   +     ++  
Sbjct: 170 GLVVWIVPIISAQASSFVYRAPAIYQDFID-------SDTFKRIDDVLHVNDWVNNNVPK 222

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             E+   ++ +          G          I ++    +F     +I      L    
Sbjct: 223 FLESLTSSSAVGGFMSNLITAGSTIAQILTGTIIVLFLSLYFLSSMRTIKAWGSRLAPAS 282

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++++  +   + +  +G  ++A+           + G      + V   I+A IP
Sbjct: 283 KRERVEELTERITGAVGNYVMGQGVVAVLNATFALITMIILGFSFPQLVAVFVLILAFIP 342

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               ++   +   +L+      +    +   I L I    + P ++   + +P       
Sbjct: 343 LVGGVAALVLVSLILLTQGWQMSVTFAIAYFIYLQIEAYVISPRIMSKAVSVPGGVAIIA 402

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +  G    G+LG  I   + A + ++ KE  +  ++++
Sbjct: 403 VAAGGALWGVLGALIAIPVAASLLILVKEVFIPRQDHR 440


>gi|229122455|ref|ZP_04251668.1| hypothetical protein bcere0016_27500 [Bacillus cereus 95/8201]
 gi|228661016|gb|EEL16643.1| hypothetical protein bcere0016_27500 [Bacillus cereus 95/8201]
          Length = 306

 Score =  130 bits (326), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 105/299 (35%), Gaps = 4/299 (1%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           K+       ++  + ++ L  V +  +      ++ +LV  +    + G    + LS   
Sbjct: 8   KKVPRNLAILLLYLFIITLTAVGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSHHR 67

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              W S                +      +  + +   A+    I  +  L I  +   L
Sbjct: 68  LFEWLSTQNY----VSIETIEKNAIEYLKDIPNTLTSSATALFGIITNVALVIFTVPFIL 123

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+ ++DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y+
Sbjct: 124 FYMFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYF 183

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P    LG+I A   +IP   P    A ++ + +  +   A  + +   I       
Sbjct: 184 IIDLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESN 243

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + P ++   + +  L     ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 244 IISPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 302


>gi|302553875|ref|ZP_07306217.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471493|gb|EFL34586.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 465

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 97/320 (30%), Gaps = 14/320 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      +SAL+I     P       +          +  +
Sbjct: 106 RLLVLAGTLWVLMRVISAVQLVVLAFVSALLITALLQPTVGRL-RRLGVPRGPATAMTAI 164

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  + +L  ++                     W          
Sbjct: 165 LGFVVMGLIGWFVTWQVMENIDDLSGQIQNGIDELRN------------WLLNSPFHVTD 212

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         D I         + ++    I+  + +  F   DG  I +  
Sbjct: 213 KQINEIAKNLREAVGANTDQITSAGLEGVTVVVEALTGILLAVFSTLFLLYDGKRIWEWT 272

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 273 LRLVPAAARPGMAGAGPAAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFI 332

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +F A    +       I    L+PF++G  +++
Sbjct: 333 FLFAFIPLVGAVVSGALAVVVALVTQGVFTAVMTLVVVLAVQQIEGHILQPFILGRAVRV 392

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  G    G+ G
Sbjct: 393 HPLAVVLSVAAGGMVAGIGG 412


>gi|197302448|ref|ZP_03167503.1| hypothetical protein RUMLAC_01176 [Ruminococcus lactaris ATCC
           29176]
 gi|197298346|gb|EDY32891.1| hypothetical protein RUMLAC_01176 [Ruminococcus lactaris ATCC
           29176]
          Length = 418

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 99/331 (29%), Gaps = 2/331 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +     +V    L GF  P +   I+   + P+ +    + +      + +  + V
Sbjct: 15  LFSILATAAFIVIGIRLIGFLMPFVIGWIVASIATPLVNWLEKRMKIVKKLGSALIVILV 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLS 128
           +   I+   F     + E+  L+       +        +     G++    E      +
Sbjct: 75  LAAIILVSYFAVSRLVTEVTGLIRDFPDLYEQTETGLEKIGQTLSGVFVRLPEGIQNGWT 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L +   +     A           +S I MI++ +FF      +   +
Sbjct: 135 SLVENLDDYMGNLMSKVSEPTVTAAGNAAKKVPYMLVSFIVMIMSAYFFIVQREDVIHWM 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +           +   +   +   F     I     L+L +      +   V +  + 
Sbjct: 195 KGIAPEAVTKRMAMVMDNLKYAVGGYFKAQFKIMGIVFLILLAGLGFLKIHYFVLIAFLI 254

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A +  +P     +         +    +      L   +    V + ++P LVG  + L 
Sbjct: 255 AFLDFLPFFGTGTAMIPWAVYEVFMGEYKVAAALLIIYVVTQAVRQLIQPKLVGDSVGLN 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L T   L  G R  G++ + +   +  +I 
Sbjct: 315 PLVTLLLLYIGYRVGGVIWMILAVPVGMVII 345


>gi|288926027|ref|ZP_06419956.1| membrane protein [Prevotella buccae D17]
 gi|288337247|gb|EFC75604.1| membrane protein [Prevotella buccae D17]
          Length = 387

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 128/364 (35%), Gaps = 17/364 (4%)

Query: 1   MRETMLNPQGIMRWM----IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E  +    ++RW+    ++  +L  + +L G   P   A +  +  +PI      +  
Sbjct: 1   MNEQKITFDKLVRWVGIGALILAVLYLVNYLSGALLPFFIAWLFAYLLYPIVKFIQYRLH 60

Query: 57  ES-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   ++  + V+ +    +  +    + + ++L                  + I  
Sbjct: 61  VKVRALAIIVTMILVIAVIAGVIYLIIPPMIEQFEKLGEVTTKWLHTTTHTNNLTTYIQE 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            + A++   +     +       +      +  +  F  +   + +   ++ +  ++ +F
Sbjct: 121 WLQANQSEIEKFFKSRD-----FSDAIKTAMPRLFSFVGQTASVVMS-IIASMITLLYMF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   ++Q    +       +W ++ + V + + +   G  ++A+  G++    + +
Sbjct: 175 FILLDYEHLTQNWIRIFPQKNRPFWHELMQDVERELNNYIRGQGLVALCMGIMFCIGFTI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV--- 292
            G P  + LG++  I+ ++P     +    +   ++K         +++G   +  +   
Sbjct: 235 IGFPMAIGLGILIGILDLVPYLHTFALIPTAFLAMLKAADTGQNFWWVFGLAVIVFIVVQ 294

Query: 293 ---DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              D    P ++G  + L        L      +G +GL I   L  LI   W+  +   
Sbjct: 295 IITDFITTPKIMGKAMGLNPAILLLSLSVWGTLLGFIGLIIALPLTTLIIAYWQRYVTKE 354

Query: 350 KENK 353
              K
Sbjct: 355 HAPK 358


>gi|157371749|ref|YP_001479738.1| hypothetical protein Spro_3512 [Serratia proteamaculans 568]
 gi|157323513|gb|ABV42610.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 356

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 115/355 (32%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+    + LYFL G   P+L A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQAIALLVILVAGFLILYFLHGILTPLLVAIVLAYLLEWPTARLQ-RIGCSRNW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +    + ++ +  +      +   L++ +             L      +    
Sbjct: 69  AASMVMIMFAGIAMLLVFVVAPTAWQQGINLMTDLPGMLNQFYNFAATLPKRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + + +FF  +D 
Sbjct: 125 ----VDAGIIDMMAENLRGRLSGMGESVVKFSLASLVGLLTLAIYLILVPMMMFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + +  +   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWIEMNQQITNYIRGKVLEMVIVGVATYLVFVVLDMRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   + + +      A    L +   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVLVTIPVVVVAMFQWGVGADFWTLIVAYLVVQGLDGNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     ++      G  G+F    L  L+  +       ++   E
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDELRVETE 354


>gi|56696016|ref|YP_166370.1| membrane protein [Ruegeria pomeroyi DSS-3]
 gi|56677753|gb|AAV94419.1| membrane protein [Ruegeria pomeroyi DSS-3]
          Length = 355

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 113/332 (34%), Gaps = 14/332 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   + +  LY L     P +    I +   P+          S      + T++ + LF
Sbjct: 14  LAAAVFVAVLYLLGDVLLPFVIGGAIAYFVDPVADRLERW-GLSRAAATAVITIASVLLF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +L +    + +M +L++ +    Q                                 
Sbjct: 73  VLMVLMVVPALITQMIDLINVLPQLFQDLRTFVSTHF----------PSVLDRESNAHQM 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I S      +    + +  +      ++  L ++ + +   +   D   +  ++D L   
Sbjct: 123 IASVIETLKSRSGDLLQTLAGSVGSAINVVLLLVIVPVVSVYLLLDWDRMIARIDQLLPL 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 ++++  +  V+ S   GM  + +  G     A  + G+   + +G+I  ++  I
Sbjct: 183 DHAPVIRRLAGEIDAVLASFVRGMGTVCLILGTYYAVALMIVGLQFGLVVGLIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+  +   +    A+   +    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWLSIGLVAAIFALGQVVEGNLLTPKLVGSSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               L       G +G+ I   + A + V+ +
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVLAR 334


>gi|126443267|ref|YP_001062066.1| hypothetical protein BURPS668_A1067 [Burkholderia pseudomallei 668]
 gi|126222758|gb|ABN86263.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 356

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 158/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +    Q GIP P  LS +P G   +  W +      +  +   T +K
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASTWWQA---NLAKPLHPATAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G++ +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGSVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|329922720|ref|ZP_08278272.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|328942062|gb|EGG38345.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 358

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 9/326 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    +        PV  A    +   PI      + +   +   ++       L  
Sbjct: 26  ISFLFRPIVSMFNMLIVPVAMAGFFYYLLRPIVDYLERR-KIKRSIGVLMLYFVFAGLCA 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + ++     +++  +S      +        L            +       +S   
Sbjct: 85  IFGIVVWPTLREQIENFISNAPFLVEGVEEQIDQLQQ--------NQFWSRYIPTESELS 136

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S T      I +I    +    +     + I  + I L++  ++G  +  +L S+    
Sbjct: 137 TSLTEYMNRIITWISNSINNLISVVSGVVVIIATIPIILYYMLKEGSKLPPRLLSVLPRR 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    +++   +   + +  +G  I+ +   +++   + + G+P  + L VI+  +  IP
Sbjct: 197 YRRDGQEVLGEIDTALSNFIIGKVILNLILSVMIYIGFLIIGLPYSLLLTVISFFLNFIP 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +  T   + +    +   A    +   I   I D  L P + G  + +  L T   
Sbjct: 257 YIGALLATIPVVIIGFIESPSIAIWSVVVIVIAQQIQDNILTPVIYGKQLDIHPLTTVVL 316

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++ G    GLLG+ +      +I +I
Sbjct: 317 ILVGGDFFGLLGILLAIPAYMIIKII 342


>gi|72162564|ref|YP_290221.1| hypothetical protein Tfu_2165 [Thermobifida fusca YX]
 gi|71916296|gb|AAZ56198.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 414

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 33/306 (10%), Positives = 88/306 (28%), Gaps = 13/306 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P  +     +            ++     ++ L  L    + ++   VS +    +  + 
Sbjct: 74  PAVNWLHRHRW-PRGLATGAVMLAAAGTLVLFLTVLGSMLVGQVVAFVSDLPRMTRSLLA 132

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                         +   T         ++ S + L       +       G   L    
Sbjct: 133 WVN-----------ATFHTDFSPTTLLSELTSVSGLVEEYASQLAGNVVGAGSTVLALLF 181

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             + + +  F+   DG    + + S+          +   I  +          ++A+  
Sbjct: 182 DGLTIALFTFYLCADGPRFRRTICSVLPPRTQREVLRAWEIAIEKTGGYIYSRALLALIC 241

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            +       L  +P   AL +   +++  IP        A+ + + +    + A  + ++
Sbjct: 242 TVAHYILLALLDIPFAFALALWMGVLSQFIPTVGTYIGGALPVLVALLDGFWPALWVLVF 301

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +     +  L+P +    + +     F  ++ GV  +G  G  +     A +      
Sbjct: 302 VTVYQQFENYLLQPRITAKTLDMHPAVAFGSVLAGVAILGAPGALLALPAGASLQTFLSF 361

Query: 345 SIMAIK 350
            I   +
Sbjct: 362 YIRRYE 367


>gi|269955017|ref|YP_003324806.1| hypothetical protein Xcel_0209 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303698|gb|ACZ29248.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 399

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 103/343 (30%), Gaps = 15/343 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +    +  ++L  L         V +A  +     P  S    +          +  + 
Sbjct: 29  VLGLIALAAVVLQVLRAGSSLLFIVFTAWFVSLAMEPAVSRLARRM--PRGAATGVVMLG 86

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+    +         + ++  LV  +       +                +   ++   
Sbjct: 87  VLGFVALFSALFGNLVVQQVTSLVETIPSLVDQALDYVDQ-----------QFGVRYSLD 135

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               ++        +    +      F         +     + LF+   DG  + + + 
Sbjct: 136 DLLAQVQQNAGSAASVAGTVAGGILSFVGALAGAVGTFFIFALLLFYLSADGPRLRRWIA 195

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL           +   + +          ++A   G +    + + G+PS +AL + T 
Sbjct: 196 SLFPPRAQEATLVVWDTMAEKTGRYVGARLVLATVNGTLSAIVFAIIGLPSWLALALWTG 255

Query: 250 IMA-MIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           I+A  IP        A+ + +  +  N +    +  WG +   + + T  P +    + +
Sbjct: 256 IVAQFIPAIGTYISIALPVLVGALSPNPWLGLIVLGWGVLYQQVENLTFEPRISARAVNV 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +F  ++ G    G+ G  +   ++A++  +        +
Sbjct: 316 NPAVSFSSVILGTSMFGVAGALLAIPVVAMLLALLDLYRTRYE 358


>gi|116617770|ref|YP_818141.1| permease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116096617|gb|ABJ61768.1| Predicted permease [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 384

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 101/324 (31%), Gaps = 5/324 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP++ + ++ +   PI                 +  + ++ +  V +  +      ++ +
Sbjct: 55  APIMISGVLYYLLSPIVGLLEKYVHLPRNLSIGVVLIVLLAIIGVAIAAIVMVLRNQVIQ 114

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +       +                +  +      S      +       T+G+  I  
Sbjct: 115 FIDNWPNYWKTSEAFINETFASEQFKFIRDYLNHTNSDLNQNVLDWSKKYLTSGVAGISS 174

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           FAS    I +            L++   DG   S  + S   +      + +   + K I
Sbjct: 175 FASILTSIGVTIVS----TPFILYYMLLDGHKFSSFVSSKFPNNSQLSVRYLLTEISKQI 230

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLL 270
                G   +A+   ++    Y + G+P  + L ++     +IP    I     V    L
Sbjct: 231 AQYIRGQLGVALAVMIMFSIGYTIIGLPYGILLALMAGFFNLIPYVGSIIAQVPVFTVAL 290

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I G         +  AIE  I    + P ++G  + +  +     L+      G+LG+ +
Sbjct: 291 IAGGPKMLILAIIVLAIEQPIEAHVISPKILGEALSIHPVTVIVVLLSSGHIFGVLGIVL 350

Query: 331 GPVLMALIAVIWKESIMAIKENKE 354
                A+  V         + N +
Sbjct: 351 AVPSYAVAKVFVTHIYDWWRANSD 374


>gi|261405714|ref|YP_003241955.1| hypothetical protein GYMC10_1865 [Paenibacillus sp. Y412MC10]
 gi|261282177|gb|ACX64148.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 358

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 9/326 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    +        PV  A    +   PI      + +   +   ++       L  
Sbjct: 26  ISFLFRPIVSMFNMLIVPVAMAGFFYYLLRPIVDYLERR-KIKRSIGVLMLYFVFAGLCA 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + ++     +++  +S      +        L            +       +S   
Sbjct: 85  IFGIVVWPTLREQIENFISNAPFLVEGVEEQIDQLQQ--------NQFWSRYIPTESELS 136

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S T      I +I    +    +     + I  + I L++  ++G  +  +L S+    
Sbjct: 137 TSLTEYMNRIITWISNSINNLISVVSGVVVIIATIPIILYYMLKEGSKLPPRLLSVLPRR 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    +++   +   + +  +G  I+ +   +++   + + G+P  + L VI+  +  IP
Sbjct: 197 YRRDGQEVLGEIDTALSNFIIGKVILNLILSVMIYIGFLIIGLPYSLLLTVISFFLNFIP 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +  T   + +    +   A    +   I   I D  L P + G  + +  L T   
Sbjct: 257 YIGALLATVPVVIIGFIESPSIAIWSVVVIVIAQQIQDNILTPVIYGKQLDIHPLTTVVL 316

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++ G    GLLG+ +      +I +I
Sbjct: 317 ILVGGDFFGLLGILLAIPAYMIIKII 342


>gi|329117036|ref|ZP_08245753.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
 gi|326907441|gb|EGE54355.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
          Length = 393

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 12/348 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++  + + +     +  +  F        P++ + I+ + + P      +    + T  
Sbjct: 30  VLVFLLTILVFTKVSFLFRPIFSFLTILMLPLVISTILYYLTKPSVDLIEN-LGPNRTTS 88

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I    ++C+ I     L      +M   +  +               +    +     
Sbjct: 89  IFIVFGLIICILIWAFSGLIPMISNQMTTFLKDLPKYVGTVNQEANKFLENKWLVSYQAE 148

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L++  +  +        + ID+    A  F        +SII     LF+F RD  
Sbjct: 149 LQDMLTNITNKALDYAQTFSKHAIDW----AGNFAGAIARITISIIISPFILFYFLRDSG 204

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +             ++   + K +     G   +AI  G++    + + G+   V
Sbjct: 205 KMKDGIVETLPTRLRKPIARVLGDINKQLSGYVQGQVTVAIIVGIMFSIMFSIVGLKYSV 264

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             G++   + M+P           + + +         + +   IE  I  + + P ++G
Sbjct: 265 TFGIVAGFLNMVPYLGSFLAMIPVVIMSLVQGPLMLVKVLIVFTIEQTIEGRFVTPLVLG 324

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +  +   F L+      G+ G+F+   + A + V+ KE     K
Sbjct: 325 NKLSIHPITIMFLLLTAGAMFGVWGVFLVIPIYASVKVVVKELFDWYK 372


>gi|313500167|gb|ADR61533.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 357

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 123/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +      +I V LY L     P L  +++ + + P+      +   S T+  V
Sbjct: 1   MTDMRRWIWLGAALLIAVLLYSLHNILTPFLVGIMLAYLADPLVDRLE-RLGLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       L +  LL L      ++  L                 ++             
Sbjct: 60  VVFGLFTLLLLALLLVLVPMLAKQLVRLYELAPQML----DWLEHVALPWVQGRLGLADG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I +     T+ +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 116 FWKFDKIKAAIGAHMGQTTDIVGMLLSQATASSLALVGWLANMVLIPVVGFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L  L           ++    +V+ +   G  ++ +  G++  +   L G+   + +
Sbjct: 176 MGKLRGLLPRQREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++  + A++P    I     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GMLAGLAAIVPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      KE+ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKESD 347


>gi|307709108|ref|ZP_07645567.1| conserved hypothetical protein [Streptococcus mitis SK564]
 gi|307620054|gb|EFN99171.1| conserved hypothetical protein [Streptococcus mitis SK564]
          Length = 369

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 106/324 (32%), Gaps = 6/324 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +        P L    + + + PI +      + +     ++   +++   ++ 
Sbjct: 29  AIITPFVSVANTIMIPFLLGGFLYYLTNPIVNFLQKYFKINRIIGILLTLCALVWGLVIG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L++           +   LS  P            +        LS
Sbjct: 89  VVYLLPILVNQLTSLIATSQTIYSRLQDLIMDLSTYPAFQNLD------IQATIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L II   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVTNSVGSVLSALFSTVLIIIMTPVFLVYFLLDGNKFLPMLERTVLKRDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   + + +   I     G+ I AI  G +    Y + G+   +   + + +  +IP  
Sbjct: 203 LHIAGLLKNLNATIARYISGVAIDAIIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I   +  +        ++  I   +    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMIIANVFTDPHRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 G++G+ +     +++  I
Sbjct: 323 LSSNIYGVIGMIVAVPTYSILKEI 346


>gi|326202550|ref|ZP_08192418.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
 gi|325987134|gb|EGD47962.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
          Length = 394

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 111/322 (34%), Gaps = 6/322 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     P+L   ++ +   PI S     +        V+A V V+   I+   +     
Sbjct: 44  FVYSIIFPILFGGLLYYILRPIVSMLEKARVPH-ILAIVLAFVIVLSALILLSSYTGSII 102

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +  +    + +  +        L       + ++   +             +    + 
Sbjct: 103 KSQFDDFAKSLPVLYKQAENTVNNLLSSNLLSYFNDSNFQTSD-----IADKVSNFLQSL 157

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + +    F     +    II + I LF+F +DG      +            +KI  
Sbjct: 158 AKSVGKNTLSFIGAITNIGSVIIILPIILFYFLKDGNKFMPSVVRFLPASQKDNMRKILT 217

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +  V+ +   G  ++A   GL++   Y + G+   + L +   I  +IP   P      
Sbjct: 218 DIDFVLSNYIAGQLLVAFFIGLLMYIGYLIIGLKYSLLLAIFAMITCIIPFFGPWIGIVP 277

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I L +  N F A  +FL   I   I +  + P ++   + +  L     L+G +   G 
Sbjct: 278 AILLSLADNPFMAVKIFLVMTIVQQIDNNLISPQVMKKSMDIHPLTVILLLMGILPIFGF 337

Query: 326 LGLFIGPVLMALIAVIWKESIM 347
           +GL I   L + I +  K  I 
Sbjct: 338 VGLIIVIPLYSAIKITIKNIIE 359


>gi|229163339|ref|ZP_04291291.1| hypothetical protein bcere0009_41050 [Bacillus cereus R309803]
 gi|228620120|gb|EEK76994.1| hypothetical protein bcere0009_41050 [Bacillus cereus R309803]
          Length = 361

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGVGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFGGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL +   ++A+I  + 
Sbjct: 330 AGIVGLLVSVPILAVIRTVI 349


>gi|254476754|ref|ZP_05090140.1| membrane protein [Ruegeria sp. R11]
 gi|214030997|gb|EEB71832.1| membrane protein [Ruegeria sp. R11]
          Length = 355

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 117/342 (34%), Gaps = 14/342 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   +  V ++ L     P +    I +   PI          S T      TV+ + LF
Sbjct: 14  IAAVVFAVVMWALGDVLLPFVLGAAIAYLIDPIADRLED-AGLSRTAATATITVAAVLLF 72

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +V LL +    + +M +L   +  A  +     +  +                       
Sbjct: 73  VVMLLVVVPTLIYQMMDLARVLPEAFNNLREFAQQHAPSLFDE----------GSRAQQT 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I+S      +    +        +  ++  +  + + +   +   D   +  ++D L   
Sbjct: 123 IVSIAQTLQSKAIAVLEGVVGSAVSLVNVMVLFVIVPVVAVYLLLDWDRMVARIDELLPR 182

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + ++  + KV+ S   GM  + +  G     A  + G+   +A+G I  ++  I
Sbjct: 183 DHAPTIRHLAGRIDKVLASFIRGMGTVCLILGTYYAVALMVVGLNFGLAVGFIAGLVTFI 242

Query: 255 PGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           P    +   A++I L      G+ ++   +     I   +    L P LVG  + L  + 
Sbjct: 243 PYLGALIGGALAIGLALFQFWGDWWSIGMVAGVFVIGQVVEGNFLTPKLVGNSVGLHPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               L       G +G+ I   + A + VI +  +    +++
Sbjct: 303 LLLALSVFGALFGFVGMLIAVPVAAALGVIARFLVEQYLDSR 344


>gi|227512952|ref|ZP_03943001.1| permease [Lactobacillus buchneri ATCC 11577]
 gi|227523079|ref|ZP_03953128.1| permease [Lactobacillus hilgardii ATCC 8290]
 gi|227083811|gb|EEI19123.1| permease [Lactobacillus buchneri ATCC 11577]
 gi|227089760|gb|EEI25072.1| permease [Lactobacillus hilgardii ATCC 8290]
          Length = 359

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 116/340 (34%), Gaps = 7/340 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVM 71
           I FI      F    F PVL A I+ +   PI +        +K+ S T+   +  + ++
Sbjct: 20  ISFIFSPIAIFFSTIFIPVLLAGILYYMLNPIVNLLTKIPIGRKKVSRTWAVTLVFLLLL 79

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+         + ++  L + V  A   G  +               L     +   
Sbjct: 80  GIIILMATVFIPKVLNQLMNLANSVPNAINDGQSLLEKALKEMNSQQL--LKKIDFTQLT 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                + T    +  + +            +  +  + + + LF+  +DG+ ++  + S 
Sbjct: 138 QKFSTNITDYANSFFNGLTSGIGGVISAAANAVIIAVTVPVVLFYMLKDGYRLAPNIKSF 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +   + + I     G  I  +  G      Y + G+P+ + LGVI  I 
Sbjct: 198 LPEKHREQTMDLISAMNRTISKYISGQMIECLFVGTFTAIGYLIIGLPNALLLGVIAGIC 257

Query: 252 AMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +IP   P    A ++ +    G         +   I   I    + P ++G  +++  L
Sbjct: 258 NIIPYLGPYIGIAPALIVSFSHGGWLGMVYNIVIVIIVQQIDGNLVYPNVIGKSLQIHPL 317

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                L+      GL+G+ +   L A++ VI        +
Sbjct: 318 TIIIILLAAGNIAGLMGMILAVPLYAIVKVIVVHLYNIYQ 357


>gi|110801094|ref|YP_695168.1| hypothetical protein CPF_0716 [Clostridium perfringens ATCC 13124]
 gi|110675741|gb|ABG84728.1| putative membrane protein [Clostridium perfringens ATCC 13124]
          Length = 366

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 104/336 (30%), Gaps = 16/336 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------SSTFLAVIA 66
           +   L ++     P++  + I F        F  K                       + 
Sbjct: 6   VFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      +LF+       + +L   +    +        +++              
Sbjct: 66  IIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEV---NMNNYADSTVLLSKVWDQ 122

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +     + + T L      ++           +D+CL+ +  I  L    +    I +
Sbjct: 123 VMNTWQEILKTVTHLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKK 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           +I +   +V     +G    A+  G +      +  +P    + V
Sbjct: 183 VMYAYLRGDIADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISV 242

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    ++IP       T  S +L+   N   A    ++      +    + P +VGG + 
Sbjct: 243 LVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVG 302

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 303 LSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 338


>gi|53802621|ref|YP_112659.1| hypothetical protein MCA0120 [Methylococcus capsulatus str. Bath]
 gi|53756382|gb|AAU90673.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 370

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 140/352 (39%), Gaps = 7/352 (1%)

Query: 1   MRETMLNPQGIMRW----MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E +++ + I  +    +I F+++      K F   +L ++I+     P+++S   +  
Sbjct: 1   MLEKLISHRLIDLFIRVGLIGFLVIYCYQIFKPFIGLMLWSVILAVAFHPMHASLARRMG 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
           +     A +  ++++   +VP   L         +LV +V   +        ++++ P  
Sbjct: 61  DKQGRAATVLVLAILLCVLVPTALLAVSFADSATDLVRQVRDGSLKVPAPRAFVAEWPLL 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                                           I  +A+  G   L + +S++   + + +
Sbjct: 121 GDKLYALWSAAHEDIGSVAARFEPKIRTVTKEILGYAASAGSAVLKFMVSLVLAGVWMAY 180

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                 +     + +     P     + R+    IR+   G+  IA  + L+LG+ + L 
Sbjct: 181 ASSGHAAARAIANRMAG---PGQGDALVRLSTTTIRAVAQGVIGIACIQALLLGAGFILV 237

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP+   L ++  ++ ++   A +      IY+ +  +      +F    I    VD  L
Sbjct: 238 GVPAAGVLALLVLLLGIMQVPALLISLPTVIYVFMTDDSTIVAIMFAIYTIVAGSVDNIL 297

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +PF++G  +  P      G +GG+ T G++GLF+G V++AL   ++   +  
Sbjct: 298 KPFMLGRGVDAPMPVILLGALGGMATGGIIGLFLGSVMLALGYQLFMAWVYD 349


>gi|302389699|ref|YP_003825520.1| protein of unknown function UPF0118 [Thermosediminibacter oceani
           DSM 16646]
 gi|302200327|gb|ADL07897.1| protein of unknown function UPF0118 [Thermosediminibacter oceani
           DSM 16646]
          Length = 349

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 108/339 (31%), Gaps = 10/339 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++  +I      L     P    ++I +T  P+     +K          +    ++
Sbjct: 20  VLILLAILIYRVRNKLSNVLLPFGVGILIAYTLNPVVLFLTAK-GFKRNVAVALIYFILL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           C   V +++L    + E+  L+  V    +                   + +   L    
Sbjct: 79  CSLAVAMIYLVPVIITELNLLIDAVPFYAREVQYFV---------YEFRKNYMSSLPAGI 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I        + +  + +      + +     S I   I  F+  +D   +   +   
Sbjct: 130 QEVIDRNIDQMESILLDLLQNLVSILLGWFSGLFSFILGPILGFYILKDLDRLKNSMTRY 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                        R V   +     G   +++  G++   A +  G+   + +G++  I 
Sbjct: 190 IPAEHRDRVFHWVRKVDSTLGRYVRGQLTVSLIVGILTSLALYSLGIDFALLIGILAGIT 249

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P+     ++ + +         + L  A+   +    + P +VG  + L  + 
Sbjct: 250 NIIPYFGPVIGAVPAVAIALLKEPGKVPWVVLAFALIQQVESGIISPHIVGENLGLHPIT 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               L+ G    G+ GL +     AL+  I    +  ++
Sbjct: 310 VILSLLIGGTFFGVWGLILAVPATALLKAIMISILEKLE 348


>gi|116512689|ref|YP_811596.1| permease [Lactococcus lactis subsp. cremoris SK11]
 gi|116108343|gb|ABJ73483.1| Predicted permease [Lactococcus lactis subsp. cremoris SK11]
          Length = 371

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 118/359 (32%), Gaps = 9/359 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +   +++F++    +  +         F P + A  + +   P+ +    K + 
Sbjct: 9   FWTVEILAVTLLIFLLTKIQFVFQPIKTLLTLLFVPFIIAGFLYYVFNPVVTFMEEKLKI 68

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
              F   I  + ++ + I  +  +    + ++  L++    A          L   P   
Sbjct: 69  KKVFGIFIVLILILGMIIFAVASVIPSLITQLTSLINATGKAYPQIRTWIEGLQHNPRFS 128

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              E     +        LS T +  N ++ I         I     + +I + I L++ 
Sbjct: 129 HIYEQLD--IKSLVERLNLSYTDILHNLLNSITISVGSIVSIITSIIMVMILVPILLYYM 186

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG  I   L             ++   +   I     G+ + A+   +V+   Y + G
Sbjct: 187 LKDGEKIIPFLKENVLTEDKLNIFELLENMNHTISRYISGVALDALLVFIVVFVGYMVLG 246

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P      +   +  +IP   P       +  +       A    ++  +   +    + 
Sbjct: 247 IPYAFLFALFAGVTNLIPYAGPYIGVLPMVVTVAFNRPITALIAVIYVLVLQQLDGNLVY 306

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P +VG  +K+  +     ++      G+LG+ I      L+  I K +      +K + 
Sbjct: 307 PKIVGSAVKVHPVTVMILMLISGSLYGILGMIIAVPAYCLVKEIVKFANSLYNNHKAEQ 365


>gi|119715222|ref|YP_922187.1| hypothetical protein Noca_0978 [Nocardioides sp. JS614]
 gi|119535883|gb|ABL80500.1| protein of unknown function UPF0118 [Nocardioides sp. JS614]
          Length = 452

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 103/320 (32%), Gaps = 13/320 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++     +++L  + F      P++ AL+I     P+      +        A++  +
Sbjct: 91  RFLVIAAAAYVLLWLVAFFAVVTIPLIVALLIAALVVPVVDGLH-RVGLPRGLAALLVVL 149

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   +  L F         ++L  +            R                   S
Sbjct: 150 AGIAFVVALLTFAGQQVATGAQDLADQSAKGLGEIKDWLR-----------DGPLHASDS 198

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   ++  L+  G        +  G         +  ++ + +FF  DG  I   +
Sbjct: 199 QINDYIQRAQDGLENTGKGIDLGSVTEVGTAVGHIFAGLFIVLFSTYFFLADGERIWAWM 258

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L       +     R+    +        I+A  + L +     + G+P  +ALGV+ 
Sbjct: 259 VRLAPRAARQHVDSSGRVAWISLTQFVRATVIVAAVDALGIMVVAGILGLPFVLALGVLV 318

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P     ++ T   +  L+      A  +     +   +    L+PFL+G  + L
Sbjct: 319 FLGAFVPMVGATVAGTVAVLVALVDQGPITALFMLGGVILVQQLEGHVLQPFLMGRWVSL 378

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  GV   G+ G
Sbjct: 379 HPLGVIVAIGCGVLVAGIAG 398


>gi|261345963|ref|ZP_05973607.1| permease, PerM family [Providencia rustigianii DSM 4541]
 gi|282566051|gb|EFB71586.1| permease, PerM family [Providencia rustigianii DSM 4541]
          Length = 360

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 110/352 (31%), Gaps = 12/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +  + ++ I  + ++F     AP+L A++  +           +   S   
Sbjct: 10  RRRFADPQAVALFSLLVIGFLVIFFFSSILAPLLVAIVFAYLLEWPTHLLQ-RIGLSRVL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I       +  + +L +      +   LV+ +           + L +    +    
Sbjct: 69  SVSIILTLFAGISAMVILIIAPTAWQQGMNLVADLPNMVTRFSEFAQKLPEQYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +N  D + + +    +      + ++ + + +FF  +D 
Sbjct: 125 ----VDAGIIDMMADNIRSRLSNVADSVVKASVASLIGIFTLAIYLVLVPLMIFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             IS+    L          K+   + + I +   G     +  G+     +    +   
Sbjct: 181 ERISKSFLKLLP-RNRLLVSKVWLEMNQQITNYLRGKVTEMVIVGVCTYIGFAYFDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+  +  +IP    ++ T   +   L   G       L +   +   +    + P 
Sbjct: 240 VLLSVLVGVSVLIPYIGAVAATIPVVLVALFQWGVGSEFWSLLIVYLVIQGLDSNIVVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     +V      G  G+F    L  LI  +       + +
Sbjct: 300 LYSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVINAWPQDVND 351


>gi|58038558|ref|YP_190522.1| hypothetical protein GOX0069 [Gluconobacter oxydans 621H]
 gi|58000972|gb|AAW59866.1| Hypothetical membrane-spanning protein [Gluconobacter oxydans 621H]
          Length = 359

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/353 (21%), Positives = 148/353 (41%), Gaps = 3/353 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + ++  ++  I       L  F + +L A I+ FT+WPIY     ++       A+
Sbjct: 1   MTTERILLGLILAGIAYGCGIILWPFLSAILWAAILAFTTWPIYRRM--RRHVRPALAAL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                     +VPL  L   G+ ++   +S++     H        + +     A     
Sbjct: 59  AMMALSALFIVVPLAVLTSAGISDIPGTISEIDTLILHVTSANPPPAWLNRIPMAGPHLV 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               H         T +       I        +        ++  +   FF + +G ++
Sbjct: 119 NAWHHFSHDVGAFATEVLRPYAGQIAHLTLTVLLRLAGGLAELVMALFVAFFLWLNGDTL 178

Query: 185 SQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              + +L + +   +   ++  I+ + +R T  G+   A+ +G++ G    LAGVPS V 
Sbjct: 179 GNTITALIDRIAGPHTTPRLINIIGRTVRGTVYGILGTALIQGVLTGIGLMLAGVPSPVL 238

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  ITA +A+ P GAP+ +   +I+L +  +  +   L ++G + +   D  +RP  +  
Sbjct: 239 LAGITAFVAVFPIGAPLVWVPAAIWLGMTHHFGHGLFLAIYGILIISGADHVIRPAFIAR 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             +LP+L T  G++GG+ T G +G+F+GPVL+A+   +  E        +   
Sbjct: 299 GAQLPYLLTVLGVLGGIVTFGGVGIFLGPVLLAVGYTLTSEFAAGPHHRERNP 351


>gi|238922675|ref|YP_002936188.1| hypothetical protein EUBREC_0250 [Eubacterium rectale ATCC 33656]
 gi|238874347|gb|ACR74054.1| protein of unknown function UPF0118 [Eubacterium rectale ATCC
           33656]
          Length = 388

 Score =  129 bits (325), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 112/359 (31%), Gaps = 17/359 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------ 58
           +        I+  +  +     P++  +++ +   P+   +  K   S            
Sbjct: 32  VFVLFKFDAIMAQIVRIINILMPIIMGIVLAYLINPMVEFYDRKLSNSLGKAIEKKCGKR 91

Query: 59  ---STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   +I+   ++ + +V ++ +    +  +   VS +    Q  +     L+    
Sbjct: 92  PSMRGLSILISLAIIIAIIVVLIMMVVPQLVSNITNAVSLLPDQIQDLVKKITELAK--N 149

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
              A E+ T+  ++  S             + F+           ++  ++ I  I  L 
Sbjct: 150 NDRAKEIITELYNNGISYFTEWVKDNMLGQVTFVINGIMGIFGTAVNCLVAFIVAIYVLL 209

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                     + + +            I +   K+      G  I ++  G +      +
Sbjct: 210 SKDTFKRQTKKLVSAFLPERHIQVLSSILKESDKIFGGFISGKIIDSLIIGAICFVCCLI 269

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             +P    + VI  +  +IP   P      S  L++  +        L+  I   +    
Sbjct: 270 LRMPYVALISVIVGVTNVIPFFGPYIGAIPSTILIMLDSPSKGVIFLLFIIILQQVDGNI 329

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + P ++G    L      F +  G    G++GLFIG     ++  + K  +      KE
Sbjct: 330 IGPKILGESTGLSPFWVVFAIFLGNGLFGVMGLFIGVPTWGVVYYLIKRYVNYRVRKKE 388


>gi|297191063|ref|ZP_06908461.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297150746|gb|EDY67165.2| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 367

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 117/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++  + L  L  +     P++  L++   +WP+      +        A   TV
Sbjct: 19  ELLLVLVMTAVALWLLGRMWSVVWPLIVGLLLTTLTWPVTRFL-RRHGWPPALAASTVTV 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +  +  +      +  EL   VV   Q                WA+        
Sbjct: 78  LFLLAAVGVVALIAVPVASQSGELTDGVVEGIQKLRE------------WAAGPPLNIGD 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S    +      + +  +           ++  ++ +  +  +FFF +DG      L
Sbjct: 126 DQISGAFDAGVARIQDSVGSMVTAVVTGLGTVVNGVVTTVLALFLMFFFLKDGPRFLPWL 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++    + + +      I+ + + +++G   W+  VP  + L V+T
Sbjct: 186 ARQLPGRLATDVPTVAARGWETLSAFVRSQAIVGLLDAVLIGIGLWILDVPLVLPLAVLT 245

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + +A  +     +   +     +P +    + L
Sbjct: 246 FVSAFVPIVGALFAGLVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   +  G    G++G  +   + ALIAV+W      + +  ++  ++
Sbjct: 306 HAAVILLAVTLGGSLAGIVGSLLAVPVAALIAVVWNYLREQLGDPSQEPGTD 357


>gi|257438013|ref|ZP_05613768.1| putative permease [Faecalibacterium prausnitzii A2-165]
 gi|257199673|gb|EEU97957.1| putative permease [Faecalibacterium prausnitzii A2-165]
          Length = 398

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 105/341 (30%), Gaps = 13/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIA 66
           +++  L  +     P      I F      S    K                     ++ 
Sbjct: 23  VVIEVLKSIWKIVFPFALGGAIAFVINVPMSFLEKKMLGKIKENNKIGKKAARPISLLLT 82

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTK 125
            + V  + I+ +  +       M  L++ +           R    D    M   +    
Sbjct: 83  IILVAGVIILVMFGVIPQLTQTMGNLMTSISDFIPQMQNWIREFSHDNQDIMKLVDQLQF 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I        N ++               + +S  F    LF   +    + 
Sbjct: 143 QPDQAIKWGISLLGNGVGNMMNTTMSAVGSIASGLATFFISFSFACYILFQKEKLHLQVR 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +            I  +  +   +   G  + A+  G++      +  +P  + +G
Sbjct: 203 KVIFAFIPKQKADAILNICSLTYRTFANFLAGQCLEAVILGMMFVITLSILKMPYALLIG 262

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A  A++P        AV  +L+   N   A    +   +   I    + P +VGG +
Sbjct: 263 ILIAFTALVPIFGAFIGCAVGSFLIFMVNPKQAVLFIIVFLLLQQIEGNLIYPHVVGGSV 322

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G   MG++G+ I   L+++   I++E +
Sbjct: 323 GLPSIWVLAAVTIGGNLMGIIGMLIFIPLVSVFYTIFREFV 363


>gi|18310895|ref|NP_562829.1| hypothetical protein CPE1913 [Clostridium perfringens str. 13]
 gi|110800685|ref|YP_696593.1| hypothetical protein CPF_2169 [Clostridium perfringens ATCC 13124]
 gi|168204903|ref|ZP_02630908.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|168208614|ref|ZP_02634239.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168214166|ref|ZP_02639791.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|168215539|ref|ZP_02641164.1| putative membrane protein [Clostridium perfringens NCTC 8239]
 gi|18145577|dbj|BAB81619.1| hypothetical protein [Clostridium perfringens str. 13]
 gi|110675332|gb|ABG84319.1| putative membrane protein [Clostridium perfringens ATCC 13124]
 gi|170663583|gb|EDT16266.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|170712978|gb|EDT25160.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170714339|gb|EDT26521.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|182382197|gb|EDT79676.1| putative membrane protein [Clostridium perfringens NCTC 8239]
          Length = 368

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 105/330 (31%), Gaps = 5/330 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 P   A  I +   P+      K +    F  +I+ + V+    + +  +     
Sbjct: 39  FLSVLTPFFWAFGIAYLINPLMMLIEKKFKLKRAFSLMISYILVIICVYILIAIIVPTIF 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             + EL S +                         L   HL+   +  I   + L +N +
Sbjct: 99  DSLSELFSNLSEYASSAESWINN----TLASMNVPLDLNHLNTSATEFISKTSTLLSNIV 154

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE-HLFPAYWKKISR 205
             +     +     + +    I  I  L           + + ++         +     
Sbjct: 155 GSLLTQTIKITSSVVKFVFGFIISIYMLMDKETLIEGCKKIIIAVMPSEKSSELFISFMA 214

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
               +     +G  I ++  G++      L G    V +  I  +  MIP   P      
Sbjct: 215 EAHNIFSRFIIGKIIDSLIIGVLCYIGLLLMGTQYAVLISFIVGLTNMIPYFGPFIGMIP 274

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L +      A  + L+  I        L P ++G  + +  L   F +  G    G+
Sbjct: 275 AFLLTLIVQPSMAIWVLLFIFILQQFDGWYLGPKILGDQVGVSPLFIIFAVTVGGGIFGV 334

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LG+F+   ++ALI +  ++ I    ENK++
Sbjct: 335 LGMFLSVPIIALIKIYTEKFIEYRLENKKQ 364


>gi|125624776|ref|YP_001033259.1| putative permease [Lactococcus lactis subsp. cremoris MG1363]
 gi|124493584|emb|CAL98569.1| putative permease [Lactococcus lactis subsp. cremoris MG1363]
 gi|300071576|gb|ADJ60976.1| putative permease [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 371

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 117/359 (32%), Gaps = 9/359 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +   +++F++    +  +         F P + A  + +   P+ +    K + 
Sbjct: 9   FWTVEILAVTLLIFLLTQIQFVFQPIKTLLTLLFVPFIIAGFLYYVFNPVVTFMEEKLKI 68

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
              F   I  + ++ + I  +  +    + ++  L++    A          L   P   
Sbjct: 69  KKVFGIFIVLILILGMIIFAVASVIPSLITQLTSLINATGKAYPQIRTWIEGLQHNPRFS 128

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              E     +        LS T +  N ++ I         I     + +I + I L++ 
Sbjct: 129 HIYEQLD--IKSLVERLNLSYTDILHNLLNSITISVGSIVSIITSIIMVMILVPILLYYM 186

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG  I   L             ++   +   I     G+ + A+   +V+   Y + G
Sbjct: 187 LKDGEKIIPFLKENVLTEDKLNIFELLENMNHTISRYISGVALDALLVFIVVFVGYMVLG 246

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P      +   +  +IP   P       +  +       A     +  +   +    + 
Sbjct: 247 IPYAFLFALFAGVTNLIPYAGPYIGVLPMVVTVAFNRPITALIAVTYVLVLQQLDGNLVY 306

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P +VG  +K+  +     ++      G+LG+ I      L+  I K +      +K + 
Sbjct: 307 PKIVGSAVKVHPVTVMILMLISGSLYGILGMIIAVPAYCLVKEIVKFANSLYNNHKAEQ 365


>gi|288919568|ref|ZP_06413898.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
 gi|288349074|gb|EFC83321.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
          Length = 401

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 102/348 (29%), Gaps = 18/348 (5%)

Query: 12  MRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +    +    PV++ L+I     P+   F  +        A  A 
Sbjct: 64  WRLIVIGTAVYILSMMVGRVRTVVIPVIAGLLIAALIHPLAQRFQ-RLGLPRLGAAFAAL 122

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +     + + +    E+  +  +V                       ++      
Sbjct: 123 IVFFLIVTGAGVAVGFNAANEIPAVADQVSEGIDQVRDYL------------TDGPFHLS 170

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +       T+    +         +  +   SI+  + + FFF  DG  I   
Sbjct: 171 EGQIDDLVDDIRKSITDNRGKLVSGVLSTASVAAEVLTSILVALFSTFFFLYDGERIWDW 230

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +          +   R     I     G   +A  + + +       G P    L ++
Sbjct: 231 IVTRFPAGAEDRVRGAGREAWNTITGYIRGTVFVAAVDAIGITIGLLAVGAPLVAPLALL 290

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T     IP     ++  A  + +L+   + +A  +         +    L+P ++   ++
Sbjct: 291 TFFGGFIPIIGATVAGIAAVLVVLVSNGLGDALIILGVVIAVQQLEGHLLQPLIMRRAVR 350

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L  L     L  G    G+ G       +A++  +        K+   
Sbjct: 351 LHPLAIVIALSAGSVLAGIPGAIAAVPFVAVVNKVATYLAAEGKDPTP 398


>gi|325981410|ref|YP_004293812.1| hypothetical protein NAL212_0713 [Nitrosomonas sp. AL212]
 gi|325530929|gb|ADZ25650.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 354

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 125/341 (36%), Gaps = 8/341 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   ++  +    +Y L     P L A +I +   P+ S    + +   T  AV+  + +
Sbjct: 12  LWWLVLACVAGGLIYLLSPILTPFLLAAVIAYICNPMVSYMADR-KIPRTMGAVLVMLLL 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F   +L +      E   L+ K+                IP      ++  +   + 
Sbjct: 71  LGVFAALILIMVPLFEKEANRLLDKMPTYLDMLKNHV-----IPWLESRLDISLQPDMNV 125

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               +             +    +  GM  +++ ++++ + + LF+  RD   + + +D 
Sbjct: 126 LREALSEHWKSAGGVAAKMLPSLTSGGMAVVEFVVNLLLVPVVLFYLLRDWDMLIKLIDE 185

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +     +++R   +++     G   + +   +   +  WLAG+   + +G++  I
Sbjct: 186 MIPRYWHDQISQLARETDRILAEFLRGQLSVILLMSICYITGLWLAGLEFALPIGLVAGI 245

Query: 251 MAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +P    I    ++ +  +    +      ++    I   +    + P+LVG  I L 
Sbjct: 246 LVFVPYLGMIVGLMLATFAAMMQFQDWSGVITVWAVFGIGQMLEGMLITPWLVGDRIGLH 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +   F L+   +  G  G+ +   + A++ V  +      
Sbjct: 306 PVVVIFALMAFGQLFGFFGILLALPVSAVMLVWLRHFRQRY 346


>gi|158317061|ref|YP_001509569.1| hypothetical protein Franean1_5305 [Frankia sp. EAN1pec]
 gi|158112466|gb|ABW14663.1| protein of unknown function UPF0118 [Frankia sp. EAN1pec]
          Length = 464

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 105/348 (30%), Gaps = 18/348 (5%)

Query: 12  MRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +I+   +  L  +    +    PV++ L+I     PI   F  +        A  A 
Sbjct: 127 WRLLIIGTAVYVLAMIVGRVRIVVIPVIAGLLIAALIHPIAHRFQ-RMGVPRLGAAFAAL 185

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L +   + + +    E+  +  +V                       ++      
Sbjct: 186 LIFLLLVVGAGVAVGFNAANEIPAVADQVSEGVDQVRDYL------------TDGPFHLS 233

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +       T+    +         +  +   SI+  + + FFF  DG  I   
Sbjct: 234 QGQIDNLVDDIRSSITSNRGRVVSGVLSTASVAAEVLTSILVALFSTFFFLYDGERIWSW 293

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +          +   R     +     G   +A  + + +       G P    L ++
Sbjct: 294 IVTRFPSGAEDRVRGAGREAWLTLTGYIRGTVFVAAVDAVGITIGLVAVGAPLVAPLALL 353

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T     IP     ++  A  +  L+   + +A  +         +    L+P ++   ++
Sbjct: 354 TFFGGFIPIVGATVAGIAAVLVALVSNGVPDALIILGVVIAVQQVEGHLLQPLVMRRAVR 413

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L  L     L  G    G+ G       +A++  +      A K+ + 
Sbjct: 414 LHPLAIVIALSAGGVLAGIPGAIAAVPFVAVVNRVATYLASAGKDPQP 461


>gi|269966936|ref|ZP_06181008.1| putative lipoprotein [Vibrio alginolyticus 40B]
 gi|269828419|gb|EEZ82681.1| putative lipoprotein [Vibrio alginolyticus 40B]
          Length = 361

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 143/357 (40%), Gaps = 2/357 (0%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+  F  K  +     A
Sbjct: 6   KITSSHRVLMVALLAAAFACYLLVEPYINSIVMAFIISLLMFPIHEWFEQKIPKHPNMAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++ V +  + ++PLLF+F   + +             +G I        +  G+     
Sbjct: 66  LLSCVVLTFIIVIPLLFVFAAIVQQGSVFSQNTYNWVTNGGIQDIFQHPFVIKGLAIVNE 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                   T+    +   +++      ++ ++   M+  LFF  RD  
Sbjct: 126 YLPFDKIEPKAIAEKIGQFATSFGSNLVAISAKILGDATNFLMNFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P   
Sbjct: 186 KIISAIRHILP-LSRSQEDRILTEIEQVSKSAVMGSFMTAIAQGLAGGIGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              ++     +   G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVVVGSIDNLLRPLLMQ 304

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+   +  ++
Sbjct: 305 GSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLNQQDNS 361


>gi|326386386|ref|ZP_08208009.1| hypothetical protein Y88_2280 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209047|gb|EGD59841.1| hypothetical protein Y88_2280 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 375

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 172/345 (49%), Gaps = 6/345 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA-VIATVSVMCL 73
            +  ++L  ++ L  F   +    I   + WPI+    +           ++ T+ V+ +
Sbjct: 32  AVAVLVLAGIWTLHPFLPALGWGGIFAISLWPIHERCAAHWPSGRGLALPILFTLLVLLI 91

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F+VP++ +    + +       +  AN  G+PVP +++ +P G   +  W  +L  P+S+
Sbjct: 92  FVVPMVMVASAVIHDSMAATQWLATANTQGVPVPDFVAHLPYGDHLAAWWQSYLGTPESI 151

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             LS         D   +   +         + + FM++ LFF  RDG S++Q L     
Sbjct: 152 SRLSHR-----ATDMHLQTGEKILGGLAHRLILLFFMLLTLFFLLRDGTSVAQALRIGSR 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             F    ++++    + IR T  G+ I+  GEG++LG AY L+GV     LG++T +++ 
Sbjct: 207 RAFGEAGERVAHQAAQAIRGTVNGLVIVGFGEGVLLGFAYELSGVTHAALLGLLTGLLSA 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP GA ++  A +  L+  G+I  A  + + G + +F+ D  +RP  +GG  +LPFL   
Sbjct: 267 IPFGAMVAVAAAAGLLVADGSILAAGIVLVIGIVVIFVADHFVRPAFIGGATRLPFLWVL 326

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G++GG+ T GL+GL +GP ++A++ ++W+E +  +K     +  
Sbjct: 327 LGILGGIETWGLIGLVMGPAIIAVLMLLWREWVGMVKGPLNPVEE 371


>gi|291087264|ref|ZP_06571876.1| putative permease [Clostridium sp. M62/1]
 gi|291075616|gb|EFE12980.1| putative permease [Clostridium sp. M62/1]
          Length = 398

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 104/341 (30%), Gaps = 13/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIA 66
           +++  L  +     P      I F      S    K                     ++ 
Sbjct: 23  VVIEVLKSIWKIVFPFALGGAIAFVINVPMSFLEKKMLGKIKENNKIGKKAARPISLLLT 82

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTK 125
            + V  + I+ +  +       M  L++ +           R    D    M   +    
Sbjct: 83  IILVAGVIILVMFGVIPQLTQTMGNLMTSISDFIPQMQNWIREFSHDNQDIMKLVDQLQF 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I        N ++               + +S  F    LF        + 
Sbjct: 143 QSDQAIKWGISLLGNGVGNMMNTTMSAVGSIASGLATFFISFSFACYILFQKENLHLQVR 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +            I  +  +   +   G  + A+  G++      +  +P  + +G
Sbjct: 203 KVIFAFIPKQKADAILNICSLTYRTFANFLAGQCLEAVILGMMFVITLSILKMPYALLIG 262

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A  A++P        AV  +L+   N   A    +   +   I    + P +VGG +
Sbjct: 263 ILIAFTALVPIFGAFIGCAVGSFLIFMVNPKQAVLFIIVFLLLQQIEGNLIYPHVVGGSV 322

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G   MG++G+ I   L+++   I++E +
Sbjct: 323 GLPSIWVLAAVTIGGNLMGIIGMLIFIPLVSVFYTIFREFV 363


>gi|260598868|ref|YP_003211439.1| putative permease perM [Cronobacter turicensis z3032]
 gi|260218045|emb|CBA32761.1| Putative permease perM [Cronobacter turicensis z3032]
          Length = 354

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 109/355 (30%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I    I+      L+FL G  AP+L A+++ +      S    +   S   
Sbjct: 10  RRRFSDPEAIALLAILVAGFCILFFLHGLLAPLLVAIVLAYLLEWPTSRLQ-RIGCSRGL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + +V    +      +   L+  +             L      +  + 
Sbjct: 69  AATLVLVLFIGIVLVMAFVVVPVAWQQGIYLIRDIPGMLNKLSDFAATLPKRFPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  I     +    +  +    +          + +I + + +FF  +D 
Sbjct: 129 IIDAIAENMRTRIITLGDSVVKYSLASLVGLLT--------LAIYLILVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + + +   G  +  I  G+     + + G+   
Sbjct: 181 EQLLNAVRRVLP-RNRGLAGQVWVEMNQQVTNYIRGKVLEMIVVGVATWIGFLIFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  I  +IP       T     + L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGISVLIPYIGAFMVTIPVVCVALFQFGMGTEFWSCFAVYLIIQGLDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     +V      G  G+F    L  LI  +           +E
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGIFFAIPLATLIKAVAHAWPETTPTAQE 354


>gi|169343821|ref|ZP_02864820.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169298382|gb|EDS80472.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
          Length = 368

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 105/330 (31%), Gaps = 5/330 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 P   A  I +   P+      K +    F  +I+ + V+    + +  +     
Sbjct: 39  FLSVLTPFFWAFGIAYLINPLMMLIEKKFKLKRAFSLMISYILVIICVYILIAIIVPTIF 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             + EL S +                         L   HL+   +  I   + L +N +
Sbjct: 99  DSLSELFSNLSEYASSAESWINN----TLASMNVPLDLNHLNTSATEFISKTSTLLSNIV 154

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE-HLFPAYWKKISR 205
             +     +     + +    I  I  L           + + ++         +     
Sbjct: 155 GSLLTQTIKITSSVVKFVFGFIISIYMLMDKETLIEGCKKIIIAVMPSEKSSELFISFMA 214

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
               +     +G  I ++  G++      L G    V +  I  +  MIP   P      
Sbjct: 215 EAHNIFSRFIIGKIIDSLIIGVLCYIGLLLMGTQYAVLISFIVGLTNMIPYFGPFIGMIP 274

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L +      A  + L+  I        L P ++G  + +  L   F +  G    G+
Sbjct: 275 AFLLTLIVQPSMAIWVLLFIFILQQFDGWYLGPKILGDQVGVSPLFIIFAVTVGGGIFGV 334

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LG+F+   ++ALI +  ++ I    ENK++
Sbjct: 335 LGMFLSVPIIALIKIYTEKFIEYRLENKKQ 364


>gi|329946826|ref|ZP_08294238.1| hypothetical protein HMPREF9056_02142 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328526637|gb|EGF53650.1| hypothetical protein HMPREF9056_02142 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 440

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 105/336 (31%), Gaps = 11/336 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +++ ++  +   +   F  +  AL+      P+ + F             +A ++
Sbjct: 95  GLGIIIVIGLVFYATSQVIPVFIGLFMALVFTSILQPMVNLFAR--IMPRYPATFLALLT 152

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +      + ++      +   L S+        +                 L  + + H
Sbjct: 153 TIGAIAGLVTYVVTSVTSQWNSLASQFSDGLDTIMEFLERGP--------LHLTQQQVYH 204

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L +        +    +           +D    +   +    FF   G  + +   
Sbjct: 205 QLQLWLRQGQHYLQSNAPSLASEVVSNASAVVDVLTVLALALFVTIFFLASGGRMWRWFL 264

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +           + +            G  ++A+ + ++ G    L G+P    L V+  
Sbjct: 265 NELPATMRESTHRAAGAGWYTFAGYARGTVLVALTDAIMAGIFLQLVGIPLAAPLAVLVF 324

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A IP    P++     +  L  G       + +  A    I    L+P ++G  + L 
Sbjct: 325 IGAFIPIIGAPLAMLVAMVVALASGGFVTMIVVGVGVAGIGQIEGHILQPLIMGRQVSLH 384

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +    G+  G    GLLG  +   L+++   ++ E
Sbjct: 385 PVVVIIGVALGTYASGLLGAIVAVPLISVAWSVYSE 420


>gi|145222657|ref|YP_001133335.1| hypothetical protein Mflv_2069 [Mycobacterium gilvum PYR-GCK]
 gi|145215143|gb|ABP44547.1| protein of unknown function UPF0118 [Mycobacterium gilvum PYR-GCK]
          Length = 391

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 130/349 (37%), Gaps = 5/349 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N +  +  + +  +    YFL+ +   +  + ++ +  +P+Y    ++    +   A   
Sbjct: 8   NQKRALAVLTVVALGFGAYFLRTYVLLIAVSAVLAYLFFPLYRRLRTRMG--TGGAAATT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
             + + +  +PL  + +   L++ ++VS +    +   +          G    + +   
Sbjct: 66  LFAAIAIVGLPLSGVVFLAFLQISQMVSGIGHWVEQTDLTALGQRLLDSGNELLARVPFV 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           + +        +   L  N  +    FA       +     +I  +        +G  + 
Sbjct: 126 NFTLTPESVRDAIGRLGQNAGEIALGFARDSVGGIVSTVTGVIIFLYVFLALLTNGDKVL 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L   L           +  ++ +T  G  IIA  +G+    + ++AG+ +   + 
Sbjct: 186 DLFRDLNP-LGDKVSDIYLAKIGAMVSATVKGQFIIAACQGVAGAISVYIAGIHNGFFMF 244

Query: 246 VI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VI   +++ IP G+ I    + I + I GN      + ++  I    +D  LRPFLV   
Sbjct: 245 VIFLTVLSFIPLGSGIVVIPLGIGMAIFGNPVGGIFVVVFHIIATTNIDNLLRPFLVPRS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L        +  G++  G +G+ +GPVLM +I        +  ++  
Sbjct: 305 AHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYRVVYRDAP 353


>gi|154484841|ref|ZP_02027289.1| hypothetical protein EUBVEN_02559 [Eubacterium ventriosum ATCC
           27560]
 gi|149733794|gb|EDM49913.1| hypothetical protein EUBVEN_02559 [Eubacterium ventriosum ATCC
           27560]
          Length = 398

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 104/341 (30%), Gaps = 13/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIA 66
           +++  L  +     P      I F      S    K                     ++ 
Sbjct: 23  VVIEVLKSIWKIVFPFALGGAIAFVINVPMSFLEKKMLGKIKENNKIGKKAARPISLLLT 82

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTK 125
            +    + ++ +  +       M  L++ +           R    D    M   +    
Sbjct: 83  IILAAGVMVLVMFGVIPQLTQTMGNLMTSISDFIPQMQNWIREFSHDNQDIMKLVDQLQF 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I        N ++               + +S  F    LF   +    + 
Sbjct: 143 QPDQAIKWGISLLGNGVGNMMNTTMSAVGSIASGLATFFISFSFACYILFQKEKLHLQVR 202

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +            I  +  +   +   G  + A+  G++      +  +P  + +G
Sbjct: 203 KVIFAFIPKQKADAILNICSLTYRTFANFLAGQCLEAVILGMMFVITLSILKMPYALLIG 262

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A  A++P        AV  +L+   N   A    +   +   I    + P +VGG +
Sbjct: 263 ILIAFTALVPIFGAFIGCAVGSFLIFMVNPKQAVLFIIVFLLLQQIEGNLIYPHVVGGSV 322

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G   MG++G+ I   L+++   I++E +
Sbjct: 323 GLPSIWVLAAVTIGGNLMGIIGMLIFIPLVSVFYTIFREFV 363


>gi|283851814|ref|ZP_06369091.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283572730|gb|EFC20713.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 404

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 61/334 (18%), Positives = 128/334 (38%), Gaps = 2/334 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +   L+ F   ++  +++     P+            T  A++ T  +    I+P+ F  
Sbjct: 24  AYIVLRPFVDILIIGVVLAALFKPVQRRLDPLCGHRPTLSALLTTGLIFTCLIIPIFFFL 83

Query: 83  YYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
              + +  + V+ +    +            +   +   +     L   +         +
Sbjct: 84  GSLLAQGVQSVNALQHQLSVTDFNTLLSRDALAPYVGWVQEHLPFLDVKKLAFQADLLDI 143

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             N    +    ++         ++ + +I  LFF  RDG ++  Q   L   L      
Sbjct: 144 SKNAGQLLLDSGTKIVGNVFVLTMNFVILIFVLFFLIRDGDAMLAQARYLLP-LSTDQEN 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I R +  V +S  LG  +IA+ +GL  G   ++ G+       ++     +   G  I 
Sbjct: 203 RIFRQLDDVAKSVILGAFVIALAQGLAGGIGLFIVGINPFFWGFMMGFASLIPVVGTAII 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  VSIYL++ G+      L +WGA+ +  +D  +RP L+    K+     F  ++GG++
Sbjct: 263 WLPVSIYLMLTGDWQWGLFLAVWGAVVISSIDSVIRPLLMQNRSKMSTFWVFLAIIGGIK 322

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             G LG+  GP+++    V+        +   E+
Sbjct: 323 FFGALGILYGPLILGFAMVMLTLYAEDYRHVLEE 356


>gi|116512078|ref|YP_809294.1| permease [Lactococcus lactis subsp. cremoris SK11]
 gi|116107732|gb|ABJ72872.1| Predicted permease [Lactococcus lactis subsp. cremoris SK11]
          Length = 390

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 105/327 (32%), Gaps = 6/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV+ A +  +   PI      ++        ++  + +  L    L+      
Sbjct: 53  FITVISLPVILAAVFYYLLNPIVDFLEKRRV-PRVLTIIVLFLIIAALIAWGLIVAIPNV 111

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +    S V             L+  P          +      +  I        N 
Sbjct: 112 ISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNA 171

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +    S+   I +            LF+  RDG  ++  +  L  + +     K+  
Sbjct: 172 VTTLSHLISKTTSILISLI----VFPFVLFYLLRDGQRLNGFVTHLLPNDWRKETSKVLH 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + +   G  ++AI   ++      + G+   VAL +    + ++P          
Sbjct: 228 EINSQLSNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIP 287

Query: 266 SIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + + L  G       + +   IE  +  + + P ++G  + +  +   F L+   + +G
Sbjct: 288 MVIVGLAIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILG 347

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G+ +     A + VI        +E
Sbjct: 348 VWGVLLAIPFYATLKVIIVHVYEWYRE 374


>gi|117164731|emb|CAJ88279.1| putative integral membrane protein [Streptomyces ambofaciens ATCC
           23877]
          Length = 363

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 124/353 (35%), Gaps = 14/353 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++ ++++ + L  L  +     PV  AL++   +WP       +        A + 
Sbjct: 21  STELLLIFVLLAVALWLLGRMWSVVWPVAIALLLTTLTWPSARFL-RRHGWPPALAASVV 79

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV+ +   +  +  +      +  EL   VV   +                WA+      
Sbjct: 80  TVAFLLTAVGVVALIAVPMSSQTDELTDGVVEGIERLRD------------WAAGPPLNI 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +  + +      + +  +    +      ++  ++ I  +  +FFF +DG     
Sbjct: 128 GDAQITSAVDTAMARVQDSVGSMVSTVATGVSAVVNGLITAILAVFLMFFFLKDGPRFLP 187

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L              ++    + + S      ++ + + + +G   W+ GVP  + L V
Sbjct: 188 WLTRQLPGRLSTDVPAVAARGWETLGSFVRSQALVGLLDAVFIGLGLWILGVPLVLPLAV 247

Query: 247 ITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T + A +P    +       +  L+   + +A  +     +   +     +P +    +
Sbjct: 248 LTFVSAFVPIVGALFAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L        +  G    G++G  +   + ALIAV+W      + ++ E+ ++
Sbjct: 308 GLHAAVILLAVTLGGSLAGVVGTLLAVPVAALIAVVWNYVRDQLGDHAEEPAA 360


>gi|167819115|ref|ZP_02450795.1| hypothetical protein Bpse9_28538 [Burkholderia pseudomallei 91]
 gi|167827496|ref|ZP_02458967.1| hypothetical protein Bpseu9_27695 [Burkholderia pseudomallei 9]
 gi|226195214|ref|ZP_03790805.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|254189761|ref|ZP_04896270.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|254300035|ref|ZP_04967481.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157809903|gb|EDO87073.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157937438|gb|EDO93108.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|225933019|gb|EEH29015.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
          Length = 356

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 158/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +    Q GIP P  LS +P G   +  W +      +  +   T +K
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQA---NLAKPLHPATAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G++ +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGSVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|299783476|gb|ADJ41474.1| Putative uncharacterized protein [Lactobacillus fermentum CECT
           5716]
          Length = 369

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 121/346 (34%), Gaps = 10/346 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 30  FVFTPLLVFVSVVITPLIISLFLYYMLNPLFRLLMKIKIYKWHMKRGIASLVVVIGLVLI 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  L    + E+ +++  +  A +    + + +S+ P           HLS     
Sbjct: 90  VAGGISALIPPVLNELNQVIHWLPQAAKESQKMIQEISEHPWVRKL------HLSTYYGQ 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                +      +  +   A           +  I + + LF+ ++DG  +   +  L  
Sbjct: 144 INDQVSKYVRQIVTGLTSSAGTIIGTITSTVIVAITVPVMLFYMFKDGNRLVPSVQKLFP 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + + + S   G  I  +   +     Y + G P  VALGV+  I  M
Sbjct: 204 ENSRDEVGELLRKMSQTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVALGVVAGIANM 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 264 VPYVGPYIGITPSLMVSIAVAPEKIIWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L+      G+ G+ +     A++  I    I      K +  +N
Sbjct: 324 MLLLAAGNIAGIPGMILCIPCYAVVKTIVTYLISIYHLRKREGDNN 369


>gi|168700115|ref|ZP_02732392.1| hypothetical protein GobsU_11345 [Gemmata obscuriglobus UQM 2246]
          Length = 421

 Score =  129 bits (325), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 125/340 (36%), Gaps = 4/340 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +    +F I V+LY     F PV+ ++++    +P       +      F  ++
Sbjct: 7   LATRVGLNLCAVFGISVALYLGSSIFIPVVFSILLASILYPFAQFTHERLLVPWFFACLL 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           +  +++ L +V +    +     +K L             V   L  +       E++ +
Sbjct: 67  SIFALVALHLVVIGAFAWAIPQTLKGLPQSEEQWIGQYNKVQSNLGTLFPIHDDDEVFGR 126

Query: 126 HLSHPQSLKILSETFLKTNGI-DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                      +   L+     D +    +R  +  LD+    I ++    F   +G  +
Sbjct: 127 ADQQHPERHPKAVALLRKQLSEDSMSSVLARLSLAGLDHLWQAILVLFITLFLIFEGQML 186

Query: 185 SQQLDSLG--EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           + ++ ++                 + + IR+  +  T++ +G  LVLG+ Y   G+    
Sbjct: 187 ADKVKAIFGTSMETRGRVTLAFAEMGEAIRTYLVWRTVVNLGLALVLGTVYQQVGLQHWY 246

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              ++ A+++ +P    I+      +  L+  +   A  + ++    +      + P+++
Sbjct: 247 LWALLVAVLSYVPYIGTIAAGIPPFLDALLFVDPLAAFGIAIFYTCVVTFEGYIIVPWVM 306

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + L         +   +  G+ GLF+   LMA +  +
Sbjct: 307 GRSMDLNATTVLLACLYWHQVWGIAGLFLAMPLMAALKAV 346


>gi|312862680|ref|ZP_07722920.1| putative membrane protein [Streptococcus vestibularis F0396]
 gi|311101540|gb|EFQ59743.1| putative membrane protein [Streptococcus vestibularis F0396]
          Length = 392

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 121/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILV--------------SLYFLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q +M ++I+ +I +               + FL     P++ ++++ +   P+   
Sbjct: 18  ILNNQVVMAFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLV-L 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + K   + T   ++    +  L +  +         ++  L+                 
Sbjct: 77  LVEKTGLNRTMSILLIYAILALLLVWGISTAIPNLQDQILILIRNAPSYIARANSETERW 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +P            LS   +  +       T+ + +I  FAS    + +   L+   +
Sbjct: 137 LKLPILSNFHGDLEAVLSDFSARMVNYAEHFSTSALTWIGTFASTVARVTVAIILTPFIL 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +  RD   +     S     F     ++   +   +     G   +AI   ++  
Sbjct: 197 F----YLLRDSQKMKHSFVSALPTRFRKTTVRMLSDINSQLEGYVQGQVTVAIVVAIMFC 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+   +  G++   + MIP           + + +         + +   IE  
Sbjct: 253 IMFKIVGLRYGMTFGILAGFLNMIPYLGSFLAMVPVVIMGLVQGPAMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ +E     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVVREIFDWYR 372


>gi|167722951|ref|ZP_02406187.1| hypothetical protein BpseD_28289 [Burkholderia pseudomallei DM98]
          Length = 356

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +    Q GIP P  LS +P G   +  W +      +  +   T +K
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQA---NLAKPLHPATAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYTFAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|251782671|ref|YP_002996974.1| hypothetical protein SDEG_1265 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391301|dbj|BAH81760.1| hypothetical membrane spanning protein [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 393

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 113/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F      P++ + I+ + + P+    I+    S T    I    ++ LF+
Sbjct: 43  ISFLFTPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPSRTTSIFIVFGLIILLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L++     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNEEANKLLENEWLVSYKPQLQDMLANTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSGKMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRMPMARVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYSITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      I + +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVIIMAMVQGPLMLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     ++
Sbjct: 338 LLTAGSMFGVWGVFLVIPMYASVKVVVKELFDWYQK 373


>gi|125624132|ref|YP_001032615.1| hypothetical protein llmg_1311 [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124492940|emb|CAL97903.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070906|gb|ADJ60306.1| hypothetical protein LLNZ_06780 [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 390

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 105/327 (32%), Gaps = 6/327 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV+ A +  +   PI      ++        ++  + +  L    L+      
Sbjct: 53  FITVISLPVILAAVFYYLLNPIVDFLEKRRV-PRVLTIIVLFLIIAALIAWGLIVAIPNV 111

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +    S V             L+  P          +      +  I        N 
Sbjct: 112 ISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNA 171

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +    S+   I +            LF+  RDG  ++  +  L  + +     K+  
Sbjct: 172 VTTLSHLISKTTSILISLI----VFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLH 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + +   G  ++AI   ++      + G+   VAL +    + ++P          
Sbjct: 228 EINSQLSNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIP 287

Query: 266 SIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + + L  G       + +   IE  +  + + P ++G  + +  +   F L+   + +G
Sbjct: 288 MVIVGLAIGGPLMLVKVIIVLIIEQTLEGRFISPLVLGKQMSIHPITILFVLLTAGQILG 347

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           + G+ +     A + VI        +E
Sbjct: 348 VWGVLLAIPFYATLKVIIVHVYEWYRE 374


>gi|23010964|ref|ZP_00051477.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 377

 Score =  129 bits (324), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 117/350 (33%), Gaps = 10/350 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+   I+ +++  LY L+    P ++ L + +   P+      +         ++   
Sbjct: 17  RAIIGLSILAVLIFLLYELREVMLPFVAGLALAYLLDPLADRLE-RLGLGRLAATLLILA 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  F+V L+ +      ++  LV+ +         +         G     +    + 
Sbjct: 76  GFVVGFVVLLIIVVPLAASQIASLVNALPAMVARLQSILVE----RAGPLLQRVGGAEVV 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +             +         +     ++   +  F+   D   +   L
Sbjct: 132 NELQSSVGTLVGQGGTWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIATL 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D           ++++  +   +     G +++ +  G       +L G+   V +G+I+
Sbjct: 192 DGWVPPRHRPTVRRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGLIS 251

Query: 249 AIMAMIPGGAPISFTAVSIYL-----LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  IP    ++   +SI +        G+  +         +  F+    + P LVG 
Sbjct: 252 GFLTFIPYVGTLTGFMLSIGVALVQWWPSGDWLHIGLTLGVFLVGQFLEGNVVSPKLVGD 311

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +   F L+      G LGL +   + A I V+ +  I    E++
Sbjct: 312 SVGLHPVWLMFALLAFGSLFGFLGLLLAVPVAASIGVVVRFGIERYLESR 361


>gi|297561590|ref|YP_003680564.1| hypothetical protein Ndas_2641 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846038|gb|ADH68058.1| protein of unknown function UPF0118 [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 408

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 96/315 (30%), Gaps = 13/315 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P  +     +         +  + V+ L +V L  L    + ++   VS++    +  + 
Sbjct: 66  PAVNWLHRHRW-PRGPATGLVMLLVLALTVVFLSLLGSMLVGQILAFVSEIPAMIRAALA 124

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                         +   T +       +I S + L       I       G   L    
Sbjct: 125 WVN-----------TTFDTSYSPTTLLNEISSASGLIEQYASGIANNVWGAGTTVLALLF 173

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + + + +  F+   DG    + + S+          +   I             ++A+  
Sbjct: 174 NALTIALFTFYLCADGPRFRRVICSVLPPRTQREVLRAWEIAITKTGGYLYSRALLALVC 233

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
                       +P   AL +   +++  IP         V + + +   I+ A  + ++
Sbjct: 234 SGAHYVVLVALDIPFAFALALWVGVLSQFIPTVGTYIGGVVPVLVALMEGIWPAVWVLVF 293

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +     +  L+P +    + +     F  ++ GV  +G  G  +   + A +      
Sbjct: 294 IVVYQQFENYLLQPRITARTLDMHPAVAFGSVLAGVAILGAPGALLALPMGASMQAFLGT 353

Query: 345 SIMAIKENKEKISSN 359
            I   +  +  + S+
Sbjct: 354 YIRRYEVAEHPLLSD 368


>gi|229916878|ref|YP_002885524.1| hypothetical protein EAT1b_1151 [Exiguobacterium sp. AT1b]
 gi|229468307|gb|ACQ70079.1| protein of unknown function UPF0118 [Exiguobacterium sp. AT1b]
          Length = 375

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 104/325 (32%), Gaps = 1/325 (0%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI      F      P L A ++ + +        S+ +   +F  +I  + ++ L ++ 
Sbjct: 31  FIFYPLGIFFATVLTPFLIAGVLFYLTVGFVDWLESRLK-RRSFAILIILLFLLLLAVLF 89

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ L      ++  L+       +        L          + +           I  
Sbjct: 90  VITLGPILTRQLFALLDAFPRVAEASYRQLVNLYRALEEYTWFQNYINQNETSIDTWIRQ 149

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T      I  +     R     +    ++   +    F   DG  ++  +       + 
Sbjct: 150 LTDTVGAVIGSVAGSLGRVLAFIISGLFTLFIALFLYVFMLIDGGKLASAIVRWVPRTYE 209

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              ++I   + + I+       I+    G     A WL  VP  + LG+      +IP  
Sbjct: 210 QDARQILHDMHETIKRYVRAQLIVCTFVGFFATIALWLLDVPFFLPLGIFIFATNIIPYF 269

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A ++ +        A  + +   I   +    + P + G  +++  +     L+
Sbjct: 270 GPFLGAAPAVLIAFIDEPVKAIYVIVAITIIQQLDANVISPLVQGKSLRVHPITITLVLL 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIW 342
              R  G++G+ +     A++ V +
Sbjct: 330 VAGRLAGIVGMLLAVPFYAVLKVTF 354


>gi|238796346|ref|ZP_04639855.1| hypothetical protein ymoll0001_21740 [Yersinia mollaretii ATCC
           43969]
 gi|238719791|gb|EEQ11598.1| hypothetical protein ymoll0001_21740 [Yersinia mollaretii ATCC
           43969]
          Length = 367

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 136/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L         I+ +I+ S + ++ F      A ++   +WP+              
Sbjct: 7   RRLDLPKLMFGVIFILIMIVASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKLLWGKRWL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
              I T+ ++ LF++P+  L    +     L+      +   +P   WL  +P  G    
Sbjct: 67  AVFIMTLLLILLFVIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQSVPMVGDKLY 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   ++   +  I            ++   A+  G     + + +  M++     Y  
Sbjct: 127 NSWHTLIAGGGNAIIAKVQPYVGAAATWLVAQAAHVGY----FLIHLALMVLFSVLLYFH 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+  
Sbjct: 183 GEQVGLGIRHFAVRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQY 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                V+  I  +   G  +      ++L   G+    T L +W  +    +D  LRP+L
Sbjct: 243 ATLFTVLMFICCVAQLGPLLILVPAILWLYWTGDTTWGTVLLVWSCVV-GTMDNFLRPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I  
Sbjct: 302 IRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVNEAPEPEESIKE 359


>gi|254483129|ref|ZP_05096363.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
 gi|214036651|gb|EEB77324.1| conserved domain protein, putative [marine gamma proteobacterium
           HTCC2148]
          Length = 363

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 115/349 (32%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +   + ++  +++ I +  L  +    AP+L+++++ +      S   S        
Sbjct: 10  RTYLFEEESVLLLVLLAISVALLVTIGDILAPLLASIVLAYLMQGFSSQLQSH-GAPPWL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              ++    +  F    L L      ++  L S++      G  +   L +    ++ ++
Sbjct: 69  GLALSYGVFIGAFFGFTLGLLPLVWRQLMALASELPRYLDQGRQLLSVLPERYPEIFTAD 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   Q         L T  +  +P              + +I + + +FFF RD 
Sbjct: 129 QINELVGMAQLEAANMGQMLVTRSLASLPGL--------FTVMVYMILIPMLVFFFLRDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L            ++I   + +   +   G  +  I  G V  +A+   G+   
Sbjct: 181 EQILDWLAKFLPEK-RPLLRRIWGEMNQQFANYARGKVLEIIVVGSVSYAAFAWMGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LG++  +  +IP       T   I++     G       LF    +   +    L P 
Sbjct: 240 ALLGLLVGLSVIIPYIGAALVTLPVIFVGFFQWGFTTEFYTLFAVYVVIQGLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      GL G+F    L  LI  I       
Sbjct: 300 LFSEAVNLHPVAIILAILFFGGIWGLWGVFFAIPLATLIKAIINSWPTR 348


>gi|319405632|emb|CBI79255.1| permease protein [Bartonella sp. AR 15-3]
          Length = 385

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 119/351 (33%), Gaps = 11/351 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   ++ ++       P ++ +++ +   PI   F  +      F  V+ T
Sbjct: 29  KQIFFWLGTLIFFVIFMFIFGSILFPFIAGIVLAYFLNPIVQIFE-RIGIHRVFGTVLIT 87

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +S++ +F+  L+ L      ++++ VS  + +            +      +      + 
Sbjct: 88  LSIIIIFVAALIILIPIISGQIQQFVSNGLPIYVNRIQTFFVEHNFDWVRRYFDSDPNEL 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ ++L   S     ++ I  +     + G   ++     +   +  F+   D   +  
Sbjct: 148 HTNIKALLGQS-----SDFITSLLNSLLKSGKSIVNIVSLFVVTPVVTFYILLDWPQMVN 202

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          + +   + K +     G   + +           + G+   + +G+
Sbjct: 203 AVDSWIPRSHLITIRSLFHEMDKAVAGFVRGQGTVCLILAGYYAIGLTITGLNFALLIGI 262

Query: 247 ITAIMAMIPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ IP    +        V+       +      + +   I  FI    L+P LVG
Sbjct: 263 FVGLISFIPYIGTMIGFILSIGVAWVQFYPDDWSWVFVVMIVFFIGQFIEGYILQPKLVG 322

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L      +G  G+ +     A+I V+ +  +     ++
Sbjct: 323 SSVGLHPVWLMFALFAFGSLLGFTGMLVAVPAAAIIGVLVRFVLHIYLNSQ 373


>gi|189022920|ref|YP_001932661.1| hypothetical protein BAbS19_II07200 [Brucella abortus S19]
 gi|189021494|gb|ACD74215.1| hypothetical protein BAbS19_II07200 [Brucella abortus S19]
          Length = 361

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 10  MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 70  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALP-ESLEEWLK 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 129 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 188

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 189 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 247

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 248 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 307

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 308 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 356


>gi|160945294|ref|ZP_02092520.1| hypothetical protein FAEPRAM212_02813 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443025|gb|EDP20030.1| hypothetical protein FAEPRAM212_02813 [Faecalibacterium prausnitzii
           M21/2]
          Length = 424

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 113/351 (32%), Gaps = 16/351 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCL 73
           ++  L G   P +   +I +   P+ +S  S              +     +  +  + L
Sbjct: 45  AISTLTGILMPFIYGAVIAYLLKPVCNSIESFLRRFIPEKMNGLINALSVALTILFGLLL 104

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               ++ +    +  +  L           +     L  I      +EL     +   + 
Sbjct: 105 VYALVMMIVPQLITSVTTLYYTAQANITKFMNWANHLEFIEKNEQITELLNSAYAALNTN 164

Query: 134 KILSETFLKTNGIDFIPRFAS-------RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                T+LK   +  +    S           +  +  + II  +  L    R       
Sbjct: 165 LDTWNTWLKNTLLPSMQNILSGAAIGVLNVVTVAKNLIIGIIVAVYMLASRKRFVQQGKL 224

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L S+    +     +  +   K+      G  + +   G++      +   PS + + V
Sbjct: 225 VLHSIVRPRWAQLITEEVKYADKMFGGFINGKIMDSAIIGVLCYIGCLIFKFPSALLVSV 284

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  +  +IP   P      +  L++  N   A    L+  +   +    + P ++G    
Sbjct: 285 IIGVTNVIPFFGPFIGAIPATLLILIQNPIKALWFVLFVLVLQQLDGNIIGPKILGNTTG 344

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L      F ++      G +G+ +G  L A+I  + K+ ++   +  ++++
Sbjct: 345 LSSFWVLFAILLFGGLWGFVGMIVGVPLFAVIYDVIKKLVIHGLQRHQELT 395


>gi|88811527|ref|ZP_01126782.1| hypothetical protein NB231_12349 [Nitrococcus mobilis Nb-231]
 gi|88791416|gb|EAR22528.1| hypothetical protein NB231_12349 [Nitrococcus mobilis Nb-231]
          Length = 373

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 114/346 (32%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +   +++   L  + F+    APV+++L+I +    +  S    +       
Sbjct: 10  RHLNDPQVVALALVLLGGLGIILFMGDMLAPVIASLVIAYLLEDLVQSLERYRVPRR-MG 68

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+     + + ++    L      +  +LV  +     HG      L +     ++ + 
Sbjct: 69  VVLVFFLFIAVVLLVFFALIPLISRQFAQLVENLPDILDHGQMAILRLPEKYPQFFSVDQ 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   ++L     +     G + +   + +  ++     + ++ +   +FFF  D  
Sbjct: 129 V-------KTLMEELRSESLQIGRNVLASISFQSVVMLFMGAIYLVLVPFMVFFFLMDKE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   L      +  +    I   V   I S   G  +  +  G+V    + L G+    
Sbjct: 182 QIQAWLSRFLP-VHRSLIATIWCEVDAQIGSYVRGKLLEIVIVGVVTYVTFALLGLQFAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V T +  +IP       TA    +     G       + +   I   +    L P L
Sbjct: 241 LLAVATGLSVIIPYVGAAVVTAPVAVIGYFQFGPSSEFVWVLIAYGIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               +KL  +     ++      G  G+F    L  LI  I     
Sbjct: 301 FSEIVKLHPVAIIIAILVFGGIWGFWGVFFAIPLATLIRAIILAWP 346


>gi|330504186|ref|YP_004381055.1| hypothetical protein MDS_3272 [Pseudomonas mendocina NK-01]
 gi|328918472|gb|AEB59303.1| hypothetical protein MDS_3272 [Pseudomonas mendocina NK-01]
          Length = 356

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 115/325 (35%), Gaps = 8/325 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              +P L  +++ +   P+       +  S T   V+       L ++ LL L      +
Sbjct: 25  PILSPFLVGILLAYLGDPLVDRLERHR-LSRTGGVVVVFALFALLLLILLLVLVPMLGRQ 83

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  L                  S    G+    L    L    +  I       T+ +  
Sbjct: 84  LVRLYQLAPEMLDWLQGTALPWSQSHLGLQDDVLQLDQLKQVFADNIGK----TTDVLKV 139

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A+  G+  L +  +++ + +  F+  RD   + +++  L          K++    
Sbjct: 140 VLAQATSSGLALLAWLGNLLLIPVVSFYLMRDWDVLVERVRGLLPRQREGLVVKLAGECH 199

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +V+ +   G  ++ +   ++      L G+   + +GV+  + +++P    I     ++ 
Sbjct: 200 EVLGAFLRGQLLVMLALSVIYSVGLMLVGLELGLLIGVLAGLASIVPYMGFIVGIGAALS 259

Query: 269 LLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             +       +    + +   I   +    L P LVG  I L  +   F ++ G +  G 
Sbjct: 260 AALFQFGLEPYPLIGIAVVFMIGQLLEGMVLTPMLVGDRIGLHPVAVIFAILAGGQLFGF 319

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
            G+ +   + A+I V+ + +    +
Sbjct: 320 TGVLLALPVAAVIMVLLRHAHDLYR 344


>gi|307704895|ref|ZP_07641786.1| conserved hypothetical protein [Streptococcus mitis SK597]
 gi|307621509|gb|EFO00555.1| conserved hypothetical protein [Streptococcus mitis SK597]
          Length = 369

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/324 (13%), Positives = 106/324 (32%), Gaps = 6/324 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +        P L    + + + PI +      + +     ++   +++   ++ 
Sbjct: 29  AIITPFVSVANTIMIPFLLGGFLYYLTNPIVNFLQKYFKINRIIGILLTLCALVWGLVIG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L++           +   LS  P            +        LS
Sbjct: 89  VVYLLPILVNQLTSLIATSQTIYSRLQDLIVDLSTYPAFQNLD------IQATIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L II   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVTNSVGSVLSALFSTVLIIIMTPVFLVYFLLDGNKFLPMLERTVLKRDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   + + +   I     G+ I AI  G +    Y + G+   +   + + +  +IP  
Sbjct: 203 LHIAGLLKNLNATIARYISGVAIDAIIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I   +  +        ++  I   +    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMIIANVFTDPHRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                 G++G+ +     +++  I
Sbjct: 323 LSSNIYGVIGMIVAVPTYSILKEI 346


>gi|322411995|gb|EFY02903.1| hypothetical protein SDD27957_06325 [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 393

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 113/336 (33%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F      P++ + I+ + + P+    I+    S T    I    ++ LF+
Sbjct: 43  ISFLFTPVISFFAVIMLPLVISTILYYLTKPLVD-LINHLGPSRTTSIFIVFGLIILLFV 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   +  +             L +    +         L++     +
Sbjct: 102 WAISGFVPMVQTQLTSFIEDLPKYVGKVNNEANKLLENEWLVSYKPQLQDMLANTSQKAL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FA     I +            LF+F RD   +   L ++    
Sbjct: 162 DYAQSFSKNAIDWAGNFAGAIARITVAII----ISPFILFYFLRDSGKMKNGLVNVLPIK 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + K +     G   +AI  G +    + L G+   +  G+I   + MIP
Sbjct: 218 LRVPMARVLGDINKQLSGYVQGQVTVAIVVGFMFSIMFSLVGLKYSITFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                      I + +         + +   IE  I  + + P ++G  + +  +   F 
Sbjct: 278 YLGSFLAMIPVIIMAMVQGPLMLVKVLVIFMIEQTIEGRFVAPLVLGNKLSIHPITIMFL 337

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+      G+ G+F+   + A + V+ KE     ++
Sbjct: 338 LLTAGSMFGVWGVFLVIPIYASVKVVVKELFDWYQK 373


>gi|293400193|ref|ZP_06644339.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306593|gb|EFE47836.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 384

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 114/338 (33%), Gaps = 2/338 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFL 81
            +  L    + +L A ++      +      K  + +   + +I+ +  +   I  +  L
Sbjct: 35  CIGLLAPILSGLLLAFVLSIPVRGLAKRLRRKLTKATDRQIDMISLLLTLICVIAIIALL 94

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++   V  +    Q   P    L    G               +S+     + +
Sbjct: 95  CVIAIPQLTASVKSIAALVQEKWPDWVGLLQRYGIDTEKLSAHFAALDWKSILQSISSEM 154

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               I  +   A        D  +S++     L  +        + L +  +        
Sbjct: 155 -NTVISSVANVAGSTVSAIADVAISLVITFYVLIGWRELSSQSKRALYAYCKESVADRIC 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            IS++          G  +  +  G ++  ++ +AG+P      V+TA  A +P      
Sbjct: 214 HISKLAHDTYAKFLSGQCVEVMILGTLIFLSFSVAGIPYAGLTAVLTAAFAFVPYIGGFL 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             A  I   +      A   F+      F+ ++ + P +VG  + L    T   ++ G +
Sbjct: 274 SCAFGILFTLLAAPNKALLCFIVYQATQFVENQFIYPHVVGNSVGLSPFWTLLAVLLGGK 333

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G+LG+     LMAL++ +  ESI      ++   SN
Sbjct: 334 LFGVLGMIFFIPLMALVSQLLHESIERRLHTRKPELSN 371


>gi|284043193|ref|YP_003393533.1| hypothetical protein Cwoe_1731 [Conexibacter woesei DSM 14684]
 gi|283947414|gb|ADB50158.1| protein of unknown function UPF0118 [Conexibacter woesei DSM 14684]
          Length = 373

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 106/339 (31%), Gaps = 12/339 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + + L  +Y L+        A  +        + F    +    F   +  + V+ + +
Sbjct: 23  AIVLGLYLMYLLRKPLGWAAIACFVAVALSGPVAWFSRWMK--RGFAITVTLLLVLLVPV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +    + E   LV KV    +           +       ++  K       L  
Sbjct: 81  AVMAIVIPPLVREGTHLVEKVPDYAREFDDYVNNNEKLTRLNEEYDITRKVQDWANDLPS 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     I    +     G+ F++   + + + I   F    G    + L S     
Sbjct: 141 R---------IGDAAQLLGDVGVGFVNSIFAAVTIFIMTAFILGSGPRWVRMLLSFQPPD 191

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               +      + + + +   G  + A+  G+       + G+P    L V TA+  +IP
Sbjct: 192 RQRRFAMTLERMSQAVGAYVAGALLQALIAGITTFIVLTILGIPFAAPLAVATALFDLIP 251

Query: 256 GGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                I    V I  +      +     +W  +   + +  ++P +    + +      F
Sbjct: 252 MVGATIGAVIVGIVTVFADFPLDTIIWVIWAIVYQQVENNLIQPRIQNRAVGIHPFGVIF 311

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++ G   +G+ G  +   + A + ++ K+      E +
Sbjct: 312 AVLCGGTLLGIPGAILAVPVAASLQILAKDLWQWRAERR 350


>gi|26988399|ref|NP_743824.1| hypothetical protein PP_1667 [Pseudomonas putida KT2440]
 gi|24983154|gb|AAN67288.1|AE016355_6 transporter, putative [Pseudomonas putida KT2440]
          Length = 357

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 123/352 (34%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +      +I V LY L     P L  +++ + + P+      +   S T+  V
Sbjct: 1   MTDMRRWIWLGAALLIAVLLYSLHNILTPFLVGIMLAYLADPLVDRLE-RLGLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       L +  LL L      ++  L                 ++             
Sbjct: 60  VVFGLFTLLLLALLLVLVPMLAKQLVRLYELAPQML----DWLEHVALPWVQGRLGLADG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I +     T+ +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 116 FWKFDKIKAAIGAHMGQTTDIVGMLLSQATASSLALVAWLANMVLIPVVGFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L  L           ++    +V+ +   G  ++ +  G++  +   L G+   + +
Sbjct: 176 MGKLRGLLPRQREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++  + A++P    I     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GMLAGLAAIVPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      KE+ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKESD 347


>gi|326795245|ref|YP_004313065.1| hypothetical protein Marme_1981 [Marinomonas mediterranea MMB-1]
 gi|326546009|gb|ADZ91229.1| protein of unknown function UPF0118 [Marinomonas mediterranea
           MMB-1]
          Length = 356

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 112/351 (31%), Gaps = 12/351 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +  + N + ++  +++   ++ L F  G  APVL A+++ F      +    K       
Sbjct: 10  KRYLSNEEVVVFMLLLTACILVLAFWGGILAPVLIAVVLAFLLQGGVTRL-KKVGLGHNL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  +    + +  +      +    V+ +             L+       +  
Sbjct: 69  SVSIVFVLFVSSCSLFIGVMVPIIWRQAVRFVNDLPRMFLDLQIFLEALAKQNSAYVSES 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + ++   +               ++  F+           + ++ + + +FF  +D 
Sbjct: 129 AIQEVINTVTNEL--------AGLGQWVVSFSLSSIPSLFSLAIYLVLVPLVMFFLLKDQ 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L S   H   +  + I+  +   I +   G  I  +  G+V    +W  G+   
Sbjct: 181 KKIVAYLTSWLPHE-RSMMRNIAHEMNDQIANYVRGKVIEMLVVGVVSYIVFWFLGLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPF 299
             L ++  +  +IP     + T   + +    +  +     +F    +   +    L P 
Sbjct: 240 ELLALLVGLSVLIPYIGAAAVTVPVVLVAFYQHGTSNEFWYVFGAYLVVQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L    + L  L     ++      G  G+F    L  L+  I      + +
Sbjct: 300 LFSEAVNLHPLAIIVAVLFFGGIWGFWGIFFAIPLATLVKAIINAWPDSQE 350


>gi|225181973|ref|ZP_03735406.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167335|gb|EEG76153.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
          Length = 354

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 120/340 (35%), Gaps = 12/340 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            +   +I  ++               P   A+I+ +   P+     +++        ++ 
Sbjct: 18  SVAAALIFLLLYWLYRVGAAAFLVLLPFFLAIILAYILNPLVEFLENRR-IPRHLGILLI 76

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
                    +  +      +LE+++L  K+    +H       L      +   E     
Sbjct: 77  YAVFFSTIFLIGISTIPTLLLELQKLGEKIPDYTRHVQSFLLHLQSDYQRINMPENIRLV 136

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L         +   +       +             +  +I+ + + +++  RD  S+ +
Sbjct: 137 LDENIVALQENLQDVVERVTGTVLSL--------FAHTFTILIIPLLVYYILRDMESLKR 188

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L    +  +   +   + + + + F GM +I+   GL+      + GV   + LG+
Sbjct: 189 SFVMLFPSRYRKWVASMGSEMDRTLGAYFRGMLLISFLVGLLTYVGLTIIGVDFSLLLGI 248

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  +  +IP   P+     ++ + +  +   A  + +   I   I  + + P ++G  + 
Sbjct: 249 IAGLTNIIPYFGPLIGAVPAVLIGLLHSPALALQVVVVIVIVQQIESQFITPQILGRSLG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L  L   F L+ G R  GL+GL       A++ + +K +I
Sbjct: 309 LHPLIVIFVLIVGGRFFGLVGLIFAVPFAAMVRIFFKHAI 348


>gi|167897573|ref|ZP_02484975.1| hypothetical protein Bpse7_27792 [Burkholderia pseudomallei 7894]
 gi|167922146|ref|ZP_02509237.1| hypothetical protein BpseBC_26558 [Burkholderia pseudomallei
           BCC215]
          Length = 356

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +    Q GIP P  LS +P G   +  W +      +  +   T +K
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASTWWQA---NLAKPLHPATAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|183599400|ref|ZP_02960893.1| hypothetical protein PROSTU_02873 [Providencia stuartii ATCC 25827]
 gi|188021642|gb|EDU59682.1| hypothetical protein PROSTU_02873 [Providencia stuartii ATCC 25827]
          Length = 357

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 111/358 (31%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +  + ++ +    ++F     AP+L A+++ +           +   S   
Sbjct: 10  RRRFADPQAVALFTLLIVGFCIIFFFSNILAPLLVAIVLAYLLEWPTHLLE-RIGCSRVV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I       +  + +L +      +   LV  +           + L +    +    
Sbjct: 69  AVSIILTLFAGISAMVILIIAPTAWQQGINLVGDLPKMVTRFNEFAQTLPERYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +      +  + + + +FF  +D 
Sbjct: 125 ----VDAGIIDMMADNLRSRLSGVAESVVKMSVASLIGVFTLAIYTVLVPLMMFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   +  +          K+   + + I +   G     +  G+   + +    +   
Sbjct: 181 QKIISSVQKVLP-RNRLLVGKVWVEMNQQITNYLRGKVTEMVIVGVCTYAGFAYFDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+  +  +IP    ++ T   +   L   G   +   L +   +   +      P 
Sbjct: 240 VLLSVLVGVSVLIPYIGAVAVTIPVVLVALFQWGIGSDFWSLIIVYLVIQGLDSNLFVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    + L  L     +V      G  G+F    L  LI  +         E+++K+ 
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVINVWPEDTSESQQKLE 357


>gi|317047887|ref|YP_004115535.1| hypothetical protein Pat9b_1663 [Pantoea sp. At-9b]
 gi|316949504|gb|ADU68979.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 370

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 138/359 (38%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           ++  +  PQ +     I+ +I+  L+ ++ F      A ++   +WP+            
Sbjct: 4   LQRGLDLPQMLFSLMFILIMIVACLWVVQPFILGFAWASMVVIATWPLMIKLQRLLWGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   V  T+ ++ LFI+P+  L    +     +++     +     +         G   
Sbjct: 64  SLAVVAMTILLLLLFIIPIAVLVNSLIDNSAPVIAWATQGHLAVPQLDWLKEVPMVGDKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              + K +    S  +            F    A  FG   L   L ++F ++  +    
Sbjct: 124 FSSYHKLVDGGGSAIMSKLQPYIGRTTGFFVAQAGHFGRFMLHLALMLLFSVLLYW---- 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  + Q +      +          +  + IR+  LG+ + A+ +G++ G    ++G+P
Sbjct: 180 RGEQVGQGIRHFAYRMGGRRGDAAVLLAGQAIRAVALGVVVTALVQGVLGGIGLAISGIP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  +  ++  G  I      I+L   G+    T L +W  +   + D  LRP 
Sbjct: 240 YATLLTVVMILSCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSCVVGTL-DNVLRPM 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     LP +    G++GG+   G++GLFIGPV++A+   +    +       +   +
Sbjct: 299 LIRMGADLPMILILSGVIGGLVAFGMIGLFIGPVVLAVSYRLVSVWMHEAPAPDDDPET 357


>gi|238792094|ref|ZP_04635730.1| permease perM [Yersinia intermedia ATCC 29909]
 gi|238728725|gb|EEQ20243.1| permease perM [Yersinia intermedia ATCC 29909]
          Length = 362

 Score =  129 bits (324), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 116/350 (33%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+ +    LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 18  RRRFTDPQVIALLVILLVGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRPW 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 77  AASIVLVIFGGITLLAVFVVAPTVWQQGNNLISDMPKMLNKFNAFAQTLPSRYPAL---- 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  L   + +I + + LFF  +D 
Sbjct: 133 ----VDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLLKDK 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 189 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVLEMVIVGIATYLVFFVMGMNYA 247

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   + + +      A    LF+   +   +    L P 
Sbjct: 248 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGVGADFWTLFIAYLVVQGLDGNLLVPV 307

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 308 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 357


>gi|323525474|ref|YP_004227627.1| hypothetical protein BC1001_1122 [Burkholderia sp. CCGE1001]
 gi|323382476|gb|ADX54567.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 372

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 146/341 (42%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +    + ++ ++  SL  L  F   +L   I+ ++SW  Y    +       + A +
Sbjct: 7   LIERLAAVFALIILVGGSLLVLAPFTTALLWGAILSYSSWGFYRRLTAAVGGRRKWAATL 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWT 124
             + ++ + + P ++  +     + ++V+ V    +     +P W++ IP    + E + 
Sbjct: 67  IVLIILIVVLGPFVYAGFAFGAHVHDIVALVQRLFEAGLPDLPPWVARIPVVGSSIESFW 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+   S  I     L      +I   A             +   I+  FFFY  G   
Sbjct: 127 ETLTSSNSELIAQLRTLAAPAGKWILSAAIAVT----HGLGLLALSIVLAFFFYTGGEGA 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L++    +       +  +    ++    G+   A+ +G++ G   W+AGVP+   L
Sbjct: 183 GAWLNAGMRRIAGERADYLLALAGSTVKGVVYGILGTALVQGILAGFGCWIAGVPAPALL 242

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+ T  +++IPGG  I +   +I+L   G    A  L +WG + + + D  ++P L+G  
Sbjct: 243 GLATFFLSVIPGGPVIVWLPAAIWLYHGGATGWAIFLVVWGVLVVGMSDNVIKPILIGKN 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             +P +    G++GG    G LG+FIGP L+A+   +  + 
Sbjct: 303 SDMPLILVMLGILGGAFAFGFLGVFIGPTLLAVAYTVLHDW 343


>gi|51596641|ref|YP_070832.1| inner membrane protein [Yersinia pseudotuberculosis IP 32953]
 gi|149365682|ref|ZP_01887717.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|153950534|ref|YP_001400713.1| inner membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|161484817|ref|NP_669246.2| putative inner membrane protein [Yersinia pestis KIM 10]
 gi|161511367|ref|NP_993525.2| putative inner membrane protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|162100171|ref|YP_651663.2| putative inner membrane protein [Yersinia pestis Antiqua]
 gi|162139438|ref|YP_647791.2| putative inner membrane protein [Yersinia pestis Nepal516]
 gi|165927526|ref|ZP_02223358.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939531|ref|ZP_02228077.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011791|ref|ZP_02232689.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166210661|ref|ZP_02236696.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400956|ref|ZP_02306462.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422187|ref|ZP_02313940.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424857|ref|ZP_02316610.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469404|ref|ZP_02334108.1| putative inner membrane protein [Yersinia pestis FV-1]
 gi|170024083|ref|YP_001720588.1| hypothetical protein YPK_1844 [Yersinia pseudotuberculosis YPIII]
 gi|186895697|ref|YP_001872809.1| hypothetical protein YPTS_2391 [Yersinia pseudotuberculosis PB1/+]
 gi|218929498|ref|YP_002347373.1| putative inner membrane protein [Yersinia pestis CO92]
 gi|229837932|ref|ZP_04458091.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229895092|ref|ZP_04510268.1| predicted inner membrane protein [Yersinia pestis Pestoides A]
 gi|229898493|ref|ZP_04513638.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229902336|ref|ZP_04517456.1| predicted inner membrane protein [Yersinia pestis Nepal516]
 gi|270490484|ref|ZP_06207558.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294503589|ref|YP_003567651.1| hypothetical protein YPZ3_1479 [Yersinia pestis Z176003]
 gi|51589923|emb|CAH21555.1| putative membrane protein [Yersinia pseudotuberculosis IP 32953]
 gi|115348109|emb|CAL21036.1| putative membrane protein [Yersinia pestis CO92]
 gi|149292095|gb|EDM42169.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152962029|gb|ABS49490.1| putative membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|165912580|gb|EDR31211.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920581|gb|EDR37858.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989256|gb|EDR41557.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207841|gb|EDR52321.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958999|gb|EDR56020.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049809|gb|EDR61217.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056044|gb|EDR65822.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750617|gb|ACA68135.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           YPIII]
 gi|186698723|gb|ACC89352.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680671|gb|EEO76767.1| predicted inner membrane protein [Yersinia pestis Nepal516]
 gi|229688041|gb|EEO80112.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229694298|gb|EEO84345.1| predicted inner membrane protein [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229701854|gb|EEO89877.1| predicted inner membrane protein [Yersinia pestis Pestoides A]
 gi|262361631|gb|ACY58352.1| hypothetical protein YPD4_1444 [Yersinia pestis D106004]
 gi|262365627|gb|ACY62184.1| hypothetical protein YPD8_1501 [Yersinia pestis D182038]
 gi|270338988|gb|EFA49765.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294354048|gb|ADE64389.1| hypothetical protein YPZ3_1479 [Yersinia pestis Z176003]
 gi|320015062|gb|ADV98633.1| putative inner membrane protein [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 367

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 66/346 (19%), Positives = 138/346 (39%), Gaps = 6/346 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ L
Sbjct: 19  IFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQS 132
           F++P+  L    +     L+      +   +P   W+  IP  G      W   +S   +
Sbjct: 79  FVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGAN 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            +    A+  G     + + +  M++     Y  G  ++  +    
Sbjct: 139 ALMAKVQPYIGATATWFVAQAAHVGY----FLIHLALMVLFSVLLYIHGEQVALGIRHFA 194

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  
Sbjct: 195 MRAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICC 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I++   G+    T L +W  I   + D  LRP+L+     +P +  
Sbjct: 255 VAQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTL-DNFLRPYLIRMEADMPMILI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 314 LSGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 359


>gi|86138528|ref|ZP_01057101.1| membrane protein [Roseobacter sp. MED193]
 gi|85824588|gb|EAQ44790.1| membrane protein [Roseobacter sp. MED193]
          Length = 376

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 61/358 (17%), Positives = 123/358 (34%), Gaps = 17/358 (4%)

Query: 2   RETMLNP---QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           R+ M  P   Q     +   +  V ++ L     P +    I +   PI     +    S
Sbjct: 14  RQHMALPAKKQFKYWGIAALVFSVVMWALGDVLLPFVLGAAIAYLIDPIADRLET-MGLS 72

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            +    +  V +M  F++ LL L    + +M +L   +  A Q      +          
Sbjct: 73  RSTSTAVIVVLLMLFFLLALLVLLPTLINQMIDLTEILPKAFQDLRTFAQTH-------- 124

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                    S  Q         L+  GI+ I   A     + L+  +  + + +   +  
Sbjct: 125 -FPSVFTEGSRAQQTIASIVGTLQGKGIELIEGIAGSAISL-LNVLVLFVIVPVVAVYLL 182

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   +  ++D L         +++   +  V+ S   GM  + +  G        + G+
Sbjct: 183 LDWDRMIARVDELLPRDHAPVIRRLMAQIDAVLASFIRGMGTVCLILGSYYAITLMIVGL 242

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKT 295
              +A+G I  ++  IP    +   A++I L      G+ ++   +    A    I    
Sbjct: 243 NFGLAVGFIAGLVTFIPYLGALIGGALAIGLALFQFWGDWWSIGIVGAIFAFGQVIEGNY 302

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L P LVG  + L  +     L       G +G+ +   L A + V+ +  +    +++
Sbjct: 303 LTPKLVGNSVGLHPVWLLLALSVFGALFGFVGMLVAVPLAAALGVVARFLVEQYLDSR 360


>gi|119510172|ref|ZP_01629311.1| hypothetical protein N9414_00910 [Nodularia spumigena CCY9414]
 gi|119465233|gb|EAW46131.1| hypothetical protein N9414_00910 [Nodularia spumigena CCY9414]
          Length = 382

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 109/337 (32%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ ++     + +A+++  T   +             F  V++ V   
Sbjct: 7   IGLIAIVLSLYILWQIRQVLLLIFAAVVLAVTLNRLAKRIQG-FGVRRGFAVVLSVVLFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     +      + +EL  +V           + L  +        +   +    Q
Sbjct: 66  VGVVCFFWLIVPPFAQQFQELTYRVPQGFDRFNSWIQRLETLIPNQLVPYIPDFNHLIAQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         ++ I   +  F    L+  L I+ +++    F  +  +  +    L
Sbjct: 126 ----------AQPFLNQILGNSFAFVSGSLEVLLKILLVLVLTGMFLAEPQAYRKLFIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      I       +     G  I     G++      + GV + +ALGV+   +
Sbjct: 176 FPSFYRTKVDGILDKCELSLERWITGAFIAMSVVGILSVIGLSVLGVKAALALGVLAGFL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ + +    +    +F+   +   I    + P ++   + L    
Sbjct: 236 NLIPNLGPTLSLIPAMAIALLDTPWKPLLVFILYFVVQQIDANLVTPTIMANRVSLLPAV 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +  V   G LGLF+   L  +  +  +E ++ 
Sbjct: 296 TLISQLFFVTFFGFLGLFLALPLTVVAKIWLEEVLIK 332


>gi|222056187|ref|YP_002538549.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221565476|gb|ACM21448.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 358

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 117/331 (35%), Gaps = 4/331 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++     F PV  ALI+ +   P+ +    +   + T   V+   +++ L  + +LF   
Sbjct: 24  IFLSGTVFLPVFIALILTYILNPLVAKLAER-GMNRTVAIVLVFFALVLLATLAILFFIV 82

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               E+  +   +                    +   E   +HL+            L  
Sbjct: 83  SIKGELGSIEINLPEYANRLYNYIPAGVKAYLDIETPEKAYQHLTTALERLRGISFSLFK 142

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                + R  S      L          I LF+F  D   +   L +L    +  ++ + 
Sbjct: 143 ETFAVVTRAFSSTLAFVLSIL-GYFITPIYLFYFLLDMPELKTTLLNLVPERYRPWFCQK 201

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +  V +V+ S   G  ++ +   ++     +  G+   + +G I+ ++ MIP    +   
Sbjct: 202 AAEVDEVLSSFVRGQLMLCVILAVLYSIGLYFIGIDLAILIGTISGLLFMIPYLGTLFGI 261

Query: 264 AVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             S+ +  L   ++ +      W  +        + P +VG  + L  + T   L+ G +
Sbjct: 262 VFSMLMAFLKFHDLLHPMLCLGWFMLVQAAEGGIITPKIVGNKVGLHPVVTILALLIGGQ 321

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+ G+ +   + A++ V ++  +   +  
Sbjct: 322 WFGIFGMLLAVPVTAVLNVFFRSLLDYYRST 352


>gi|258542289|ref|YP_003187722.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633367|dbj|BAH99342.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636426|dbj|BAI02395.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639479|dbj|BAI05441.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256642535|dbj|BAI08490.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256645590|dbj|BAI11538.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256648643|dbj|BAI14584.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256651696|dbj|BAI17630.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654687|dbj|BAI20614.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 363

 Score =  129 bits (324), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 140/356 (39%), Gaps = 3/356 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     + +   ++  I    +  L  F + +L A ++ +T+WP++     +   +    
Sbjct: 5   QPASTERIMRLLLLGGITYGCVLVLAPFSSALLWAGVLAYTTWPLFQHLRRRMGPN--AA 62

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           ++  T+      ++PL FL    +        +++        +P     +         
Sbjct: 63  SLTMTLLCAVGVVLPLAFLASACVSSGPRWARQIMTFVGTIHELPPLPHWVTSLPAFGPD 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            + H              L+    + I        M   +  L ++  +   FFF+  G 
Sbjct: 123 ISHHWERWSRNISSVGDELRPYAGEIIQSLL-EVLMRMANGALHLVMALFIAFFFWLSGP 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   + ++   +      +   IV   +R T  G+   AI +G++ G   WL GV   V
Sbjct: 182 MLWDTVQAVMVRIAGHQAGRHLHIVGSTVRGTVYGILGTAIIQGILTGLGLWLLGVGEAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LGV+ A +A+ P GAP+ +   +++L    +      L L+G + +   D  +RP  + 
Sbjct: 242 ILGVLAAFLAVFPIGAPLVWIPAALWLFGMHHPGKGILLLLYGVLIISGADHLIRPLFIA 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              KLP+L T  G++GG+   G +G+F+GP+L+A+   +  E              
Sbjct: 302 RGSKLPYLLTVLGVIGGLLAFGGVGIFLGPILLAIGFTLTTEFAADEAAQPLAQDE 357


>gi|331085679|ref|ZP_08334762.1| hypothetical protein HMPREF0987_01065 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406602|gb|EGG86107.1| hypothetical protein HMPREF0987_01065 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 463

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 41/387 (10%), Positives = 113/387 (29%), Gaps = 28/387 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF-----------LKGFFAPVLSALIIGFTSWPIYS 49
           +++ +         +   I+    +            +     P++   ++ +   P+  
Sbjct: 34  LQQHLNRGMTAFLVVAASIVFYFAFLRFGHISGVLGKIFQILKPIIYGFVLAYLLNPLMK 93

Query: 50  SFI---------------SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
                               K+ +       A +    L +     +       ++ +V 
Sbjct: 94  MVENFIVKLLKGKIKKEERLKKFARGVGIFTALLFAGALIVALCNMILPELYRSIRNMVY 153

Query: 95  KVVLANQHGIPVPRWLS--DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            V       +     +   D    +    + T+  +  ++             I  +   
Sbjct: 154 TVPEQLNEWMERLSEMEFDDSTLALITKNVLTETTAFFENWIRSDLLRQINIWISGLTEG 213

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                   ++  + II  +  LF          + + ++ +         I+R   ++  
Sbjct: 214 VISVVNELMNIVIGIIVSVYVLFSKETFAGQSRKVVYAVLKPEKANLVLHITRKSNEIFG 273

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
              +G  I +   G++      +  +P  + + VI  +  +IP   P      S  L++ 
Sbjct: 274 GFIIGKIIDSAIIGVLCFIGLSILDMPYTLLVSVIVGVTNVIPFFGPYIGAIPSAILILL 333

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +        ++      +    + P ++G    L      F ++ G    G  G+ +G 
Sbjct: 334 TDPIKGLYFLVFIIFLQQLDGNIIGPKILGDSTGLSAFWVVFSILLGGGLFGFAGMIMGV 393

Query: 333 VLMALIAVIWKESIMAIKENKEKISSN 359
              A+I  +++  I    E K   + +
Sbjct: 394 PTFAVIYYLFQMFINQNLEKKHLPTDS 420


>gi|171912266|ref|ZP_02927736.1| conserved hypothetical transmembrane protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 407

 Score =  128 bits (323), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 116/342 (33%), Gaps = 9/342 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             M   + ++    + +++  L    GF  P++ A  +   S+P+    +SK+      +
Sbjct: 12  RAMKAGRALLTLGCVIVVIAGLKAGAGFLVPIVVAFFLSVLSFPLMHWLMSKRLPH--MV 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A+  TV  + L +   ++     + + +  V   V   +  +       +  G   A + 
Sbjct: 70  ALFVTVGAIVLTLGLTVYAGASLLRKFQSEVPGYVHKLKSYVDQTGAWLEERGVEGAKDT 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +    P  + + +   +  N    +               + ++ M+  L        
Sbjct: 130 ANQVFDVPTIISLATNQDVVKNVASMVGTTFGTVATWLGSTIIVLVVMMFILMEAPGTTS 189

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S    + G +L       +       I+      T+I+   G+      W   +   +
Sbjct: 190 RASVVEQAGGPNLA------VLLQSATDIQKYLGVKTLISAATGVAAFILCWSFNLKYPL 243

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G++      IP     +    ++   L++  +  A  + +  A+  F +D   +P L+
Sbjct: 244 LWGILAFAFNYIPAVGSTAAGIPAVIEALVQHGVGPAVGVAIGYAVINFCLDSLWQPMLM 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G    +  L     ++      G  G+F+   L  ++ VI +
Sbjct: 304 GRRFGISGLVIVLSVIFWGWLWGPAGMFLAVPLTMMMKVILE 345


>gi|146311402|ref|YP_001176476.1| putative inner membrane protein [Enterobacter sp. 638]
 gi|145318278|gb|ABP60425.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 371

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 132/349 (37%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + +  II+  L+ ++ F      A  +   +WP++           
Sbjct: 4   LRQPRDVAQILLSVLFLAIIIIACLWIVRPFVLGFAWAGTVVIATWPLFIRLQKLLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   V+ T+ +  +FI+P+  L    +     ++  V         +    S    G   
Sbjct: 64  SLAVVVMTLFLFLVFIIPIALLVNSLVDTSGPVIRSVTSGEMTIPDLAWLNSVPVIGAKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L    S  +            +    A+  G     + +    M++     Y 
Sbjct: 124 YSGWHSLLEMGGSAIMTKVRPYIGTTTTWFVGQAAHVGR----FVMHCALMLVFSALLYW 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GVP
Sbjct: 180 RGEQVALGVRHFATRLAGQRGDAAVLLAGQAVRAVALGVVVTALVQAVLGGIGLAISGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 VI  +  ++  G  +      I+L   G+    T L +W  +    +D  +RP 
Sbjct: 240 YATIFTVIMILTCLVQLGPLLVLIPCIIWLYWSGDTTWGTVLLVWSCVV-GTMDNVIRPM 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 299 LIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHE 347


>gi|306820468|ref|ZP_07454104.1| possible permease [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551543|gb|EFM39498.1| possible permease [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 360

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 103/327 (31%), Gaps = 2/327 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISK-KEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           L     P    +   +   P+      K K+++     ++       +  V  LF+    
Sbjct: 28  LLDTLTPFFWGIGFAYILNPLMIFIEKKSKKKNRVLSLLLVYAIFFGILTVFSLFVIPVI 87

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +K+L  K     +        + +    +  S +  + L    S             
Sbjct: 88  TQNIKDLYEKSSTFPKTIYEYIEKIPNKELLLGISGI-EQLLEENSSNITKWLLNFSNGT 146

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   A  F    L++ L +   I  L+   +    + + + +  +            
Sbjct: 147 LSSIVGTAFSFTSKLLNFVLGLFVSIYFLYEKEKLIDYMKKVIRAFAKKKKADLIIDYFS 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V     +  +G  I +   G++      +  +   + L +I  ++ MIP   P      
Sbjct: 207 KVNSYFYNFLVGKLIDSTIIGILCFIGMSVLKLRYALLLSIIVGVLNMIPYFGPFMGAVP 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           S+ + +  +   A    L+  +        L P ++G  +    L   F ++ G    G 
Sbjct: 267 SVIITLIYSPIQALWAALFILVLQQFDGWYLGPKILGDTVGAKPLFIIFSILVGGSFAGP 326

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           LG+ +   L   + ++W   +    + 
Sbjct: 327 LGMLLAVPLFKSLFMLWDTFLDVRTQK 353


>gi|154506026|ref|ZP_02042764.1| hypothetical protein RUMGNA_03568 [Ruminococcus gnavus ATCC 29149]
 gi|153793525|gb|EDN75945.1| hypothetical protein RUMGNA_03568 [Ruminococcus gnavus ATCC 29149]
          Length = 385

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 104/345 (30%), Gaps = 6/345 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK----GFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M       Q  +  M   +   +   L     GF  P +   II   + P+ +    + +
Sbjct: 1   MERKRPYWQVAVSLMFSILATAAFIILGVKAIGFLMPFVVGWIISAIATPLVNWLEKRLK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                   +  + V+ L ++   F       E+ +L+              R + +   G
Sbjct: 61  IVKKLGTAMIVIMVIGLIVLVGYFAVSRIAAEVTDLIQNFPDIYAQLEEGMREIGNTLSG 120

Query: 117 MW--ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            +           +            L +   +     A  F      Y +S I  I+A 
Sbjct: 121 AFSRLPRGVQNGWTTIVENLDTYMGNLVSKISEPTVTAAGNFAKRLPSYLISFIVAILAA 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +FF      +      +           +   +   +   F     I     L+L + + 
Sbjct: 181 YFFTIQREEVIAWFHKIAPPSVEKRMILVMDNLKYAVGGYFKAQFKIMGVVFLILFAGFL 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           + G+   V +  + + +  +P     +         +    +  T   +       +V +
Sbjct: 241 VLGIHYAVLVAFLISFLDFLPFFGTGTALIQWAIYSVFIGEYKITAGLVIIYAVSQVVRQ 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L+P LVG  + +  L T   L  G +  G+ G+ +   L  ++ 
Sbjct: 301 LLQPKLVGDSMGMNPLVTLLLLYVGYKIKGVFGMILAVPLGLVLI 345


>gi|294674535|ref|YP_003575151.1| hypothetical protein PRU_1867 [Prevotella ruminicola 23]
 gi|294472780|gb|ADE82169.1| putative membrane protein [Prevotella ruminicola 23]
          Length = 366

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 122/364 (33%), Gaps = 17/364 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+E  +    ++RW+   ++++ +     +L     P   A ++ +  +P       K  
Sbjct: 1   MKEKTITLDQLVRWLGAGLLVIGILLLVNYLSSVLLPFFVAWLLAYLLYPAVKFVQYKLH 60

Query: 57  -ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +     VI  V ++ +    +  +    + + ++L S      +    +      I  
Sbjct: 61  VGNRALSIVITLVLLIAVMAGVIYLIIPPMIEQFEKLGSLATDYIRKEAHIKDIPGAIQL 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +  +    +      +     +T L               G       ++ +  ++ +F
Sbjct: 121 WINQNSREIEKFFKSATFTDSVKTVLPGLFNVLGQTATVVIG------IVASLITLLYMF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F   D   ++     +       +W+ + +   + + +   G   +A+  G++    + +
Sbjct: 175 FILLDYEYLTDNWIRIFPKKSRPFWQGLGKDAGQALNNYVRGQGTVALIMGILFCIGFTI 234

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIEL 289
              P  + LG++  IM ++P     +     +  L       +          L   +  
Sbjct: 235 IDFPMAIGLGIMIGIMDLVPYLHTFALIPTVLLALLKSADTGQNFWGILALALLVFIVVQ 294

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I D  + P ++G  + L        L      +G +GL I   L  L+   +++ +   
Sbjct: 295 LICDMIVTPKVMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLLIAYYEQYVTKD 354

Query: 350 KENK 353
            EN+
Sbjct: 355 TENE 358


>gi|289705950|ref|ZP_06502324.1| aldose 1-epimerase [Micrococcus luteus SK58]
 gi|289557287|gb|EFD50604.1| aldose 1-epimerase [Micrococcus luteus SK58]
          Length = 728

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 83/262 (31%), Gaps = 1/262 (0%)

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q    +   L     G  A               +        +    +   A  F
Sbjct: 424 QQIVQGFAQLGDQLGQAVDGAIAWLAGVGVEIPRSGGGLEGLWQTLRDNSATLMNSAVSF 483

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   ++    +   + +L FF  DG  I + L         A   +  R   + + S   
Sbjct: 484 GSTAVNIGAGLFIALFSLIFFLYDGDRIWRFLLIFVPKAHRATVGRAGRSGWQSLGSYVR 543

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNI 275
               +A  + + +G    + GVP  + L V+  + + IP     ++     +  L+   +
Sbjct: 544 VQIFVAFIDAVGIGIGALILGVPLAIPLAVLVFLASFIPMIGATLTGAMAVLLALMSNGL 603

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            NA  +     +   I    L+P ++G  + L  L  F  +  G   +GL G      ++
Sbjct: 604 VNALLMLGVVLLVQQIESNVLQPLVMGKAVALHPLAVFLAVAAGSTVLGLAGAVFAVPVL 663

Query: 336 ALIAVIWKESIMAIKENKEKIS 357
           A +    +       E   + +
Sbjct: 664 AFVNSFVRALTADTPEELTERT 685


>gi|319762825|ref|YP_004126762.1| hypothetical protein Alide_2134 [Alicycliphilus denitrificans BC]
 gi|330824904|ref|YP_004388207.1| putative phytochrome sensor protein [Alicycliphilus denitrificans
           K601]
 gi|317117386|gb|ADU99874.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           BC]
 gi|329310276|gb|AEB84691.1| putative phytochrome sensor protein [Alicycliphilus denitrificans
           K601]
          Length = 787

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 100/345 (28%), Gaps = 16/345 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +I  +I+  LYF +    P++ A ++ F   P+       +      +  +   
Sbjct: 26  RLMVGLVIAALIIAGLYFGRTILVPLVLAFLLSFVLAPLVDRLRRLRVPDVAAVLAVVLA 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ L              E + L +++           R L          +   + L 
Sbjct: 86  TLLVLGAG-----ATLVANEARALSAELPSYQSTIRGKLRNLRKQMRAPGMFDGAKRTLD 140

Query: 129 HPQSLKILSETFLKTNGID--------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             Q     +                     + A                +++ + F   D
Sbjct: 141 IVQREVDAATPATPAAVQKVQVLPPPVSPAQQAMAALGSVSGPLADAALVLVFVVFILLD 200

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +L  L                   I        ++    G+ L +  W  GVP 
Sbjct: 201 RVDLRDRLLRLWGRDL-HRATDAMDEAGGRITRYLTMQLLVNATYGIPLAAGLWFIGVPG 259

Query: 241 HVALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +  GV+ A+M  +P   P+      V++   +              A+   I +  + P
Sbjct: 260 ALLWGVLAAVMRFVPYVGPLISSAFPVALAFAVDPGWSLVLWTIGLIAVLELISNNVVEP 319

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +L G    L  +             G +GL +   L   + V+ +
Sbjct: 320 WLYGASTGLSVMSLIVSATFWTALWGPVGLVMSTPLTVCLLVVGR 364


>gi|325290064|ref|YP_004266245.1| protein of unknown function UPF0118 [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965465|gb|ADY56244.1| protein of unknown function UPF0118 [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 349

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 111/322 (34%), Gaps = 9/322 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +     L     P +  L++ +   P+     +K +    +   +  ++++  F      
Sbjct: 19  IYLFSQLTEMMWPFILGLVLAYLLNPLVCWLEAK-KIGRKYAIALVFIAIIVFFAFVFFV 77

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L     LE+  L + +     +       +              K             T 
Sbjct: 78  LLPALYLELSRLSAMLPKMMDNLFKYMESIKLSFLQAGLPGEVIKLYDEKIIYAQGFATR 137

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              N ++ IP        + L          +   +F  D   ++Q +  L    +   W
Sbjct: 138 WLVNFLNDIPGILVSLTYLVLS--------PVLAIYFLADWRRMTQTMIWLVPRKYRNSW 189

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           + + + +  +I +   G  I A+  G+++G    L G    + +G+I  I  +IP   P+
Sbjct: 190 RHLLKEINLIIVNYIHGNLIDAVLVGVIIGIGAALLGTEYALLIGIICGITNIIPYFGPL 249

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                S+ L +  +   A  + +   I   I    + P L+   + L  L   F L+ G 
Sbjct: 250 IGAVPSLMLALSNSPIMAVKILVLILIVQQIDGNLINPKLMSDKVGLRPLTVVFSLLAGE 309

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
           +  GLLG+ +   L A++  + 
Sbjct: 310 KLAGLLGMLVAIPLTAIMKNVL 331


>gi|319792186|ref|YP_004153826.1| hypothetical protein Varpa_1504 [Variovorax paradoxus EPS]
 gi|315594649|gb|ADU35715.1| protein of unknown function UPF0118 [Variovorax paradoxus EPS]
          Length = 427

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 110/350 (31%), Gaps = 17/350 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  + +   + +L + +  F P++ +L++ +   P+               A
Sbjct: 67  PVDVRSASLVVLAVLASVFALQWGQAVFIPLMLSLLLTYALSPLVELLHRWHLPRWIGAA 126

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--------LSDIPG 115
            I     +      + +  Y       +LV  + +A Q      R         L  +  
Sbjct: 127 FI-----LVGLFGGIGWTGYSLSGNASQLVDSLPVAAQKLGQAMRRDKGASATPLESVQQ 181

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                E   +  S   + +      +       +  +     +  L        +    +
Sbjct: 182 AAAQLEKAAEENSARVASRRGVARVIIERPGFNVRDYLLSGTVGLLSALGQFTLVAFLTY 241

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F    G +  ++L  +             +   + + I    L     ++  GL  G A+
Sbjct: 242 FALCSGDTFRRKLIKITGSSLQKKKVTVHVLDDITRNIERYLLVQIFTSVLVGLATGLAF 301

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFI 291
           W  G+ +    G+I A+  +IP    +   A +  +  L   ++     +         I
Sbjct: 302 WAIGLENAAVWGIIAAVTNLIPYIGSVIVLAAAGLVAFLQFNSLQMGLAVAGTSLAIHTI 361

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +   L P+L     ++  +  F G++      G+ GL +G  +  +I  I
Sbjct: 362 IGNLLLPWLTSRTSRMNPVAVFVGVIFWGWLWGIWGLLLGIPITMVIKSI 411


>gi|153006036|ref|YP_001380361.1| hypothetical protein Anae109_3181 [Anaeromyxobacter sp. Fw109-5]
 gi|152029609|gb|ABS27377.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 419

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 114/322 (35%), Gaps = 8/322 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y    F  P+L A  I     P++    +         A + + +V+   + P+ +L   
Sbjct: 83  YVASPFAKPILLAATIAAILDPVHLRLTAALRGRRAASAGVLSAAVVAAIVGPVAYLVTA 142

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++   V  +  A +                    L          + +  E   +  
Sbjct: 143 FVWQVVAGVRWLRAALES------EGVSGLVARLPEPLRKIATDVTADMPLALERAREAF 196

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                               ++ + M++A++F   +G  + + LD +   L P   +++ 
Sbjct: 197 EGAGGAAAVGGLISATGTLVVNTLVMVVAVYFLLAEGHRLIEWLDEMTP-LEPGQLRELL 255

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
                 + +  +     A  +  +  + + +AGVP      ++T + A++P     +   
Sbjct: 256 ATFNGAVGAVVVSALATAGVQAALAFAGFLVAGVPQPAFFAIVTFVAALVPLVGANLVVL 315

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+ +    G+   A  L LW    +  VD  L+P L+   + +     F  L+GG+ T 
Sbjct: 316 PVAAFHFAAGHTVAAGLLALWSLGVVGTVDNLLKPVLMRRGLSVHVSLVFLALLGGLSTF 375

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           G  G+ +GP+ +A      +  
Sbjct: 376 GAAGIIVGPLALAFFLAAVRMW 397


>gi|226943150|ref|YP_002798223.1| hypothetical protein Avin_10160 [Azotobacter vinelandii DJ]
 gi|226718077|gb|ACO77248.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 364

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 148/330 (44%), Gaps = 5/330 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F + +  A ++ F SWP+     ++     +  A + T   + L  VPLL   + 
Sbjct: 22  WVLLPFASALFWAAVLAFASWPLMRLLTARLNGRESVAAGLLTAGWVILVAVPLLLFGFN 81

Query: 85  GMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            +  ++EL   +     +   P P WL+ +P          + +         +      
Sbjct: 82  LVDYIRELTGLINTLRLEGLPPPPEWLAGMPLFGDELVDLWRTVDQQGLALFATLKPYLG 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +++   +++     L+  LS    ++ +FFFYRDG  + + + SL   L     +  
Sbjct: 142 QVGNWLLARSAKLAGGMLELALS----LVLVFFFYRDGPRLERFVQSLLTRLIGERAEHY 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +V   ++    G+   A  +  +    +W+AGVP  + LG++T  +++IP G P+++ 
Sbjct: 198 LELVAATVQRVVNGVIGTAAAQSALALIGFWIAGVPGALLLGLLTFALSLIPMGPPLAWI 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             + +L+ +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   
Sbjct: 258 PATAWLVWQGDYGYAIFLGIWGMFVISGVDNVLKPYLISRGGNLPLVVVLLGVFGGIYAF 317

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G +GLF+GP L+A+   +  + +   +  +
Sbjct: 318 GFMGLFLGPTLLAVAYSLLSDWVSEARPAE 347


>gi|53721751|ref|YP_110736.1| hypothetical protein BPSS0723 [Burkholderia pseudomallei K96243]
 gi|76817947|ref|YP_337450.1| hypothetical protein BURPS1710b_A2299 [Burkholderia pseudomallei
           1710b]
 gi|126455713|ref|YP_001075020.1| hypothetical protein BURPS1106A_A0984 [Burkholderia pseudomallei
           1106a]
 gi|167741935|ref|ZP_02414709.1| hypothetical protein Bpse14_27958 [Burkholderia pseudomallei 14]
 gi|167848970|ref|ZP_02474478.1| hypothetical protein BpseB_27141 [Burkholderia pseudomallei B7210]
 gi|167914234|ref|ZP_02501325.1| hypothetical protein Bpse112_27347 [Burkholderia pseudomallei 112]
 gi|217418668|ref|ZP_03450175.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|237509212|ref|ZP_04521927.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242312985|ref|ZP_04812002.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254183096|ref|ZP_04889688.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|254192859|ref|ZP_04899294.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254262513|ref|ZP_04953378.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|52212165|emb|CAH38183.1| putative membrane protein [Burkholderia pseudomallei K96243]
 gi|76582420|gb|ABA51894.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|126229481|gb|ABN92894.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|169649613|gb|EDS82306.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|184213629|gb|EDU10672.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|217397972|gb|EEC37987.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|235001417|gb|EEP50841.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242136224|gb|EES22627.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254213515|gb|EET02900.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 356

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 157/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +    Q GIP P  LS +P G   +  W +      +  +   T +K
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQA---NLAKPLHPATAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|317047270|ref|YP_004114918.1| hypothetical protein Pat9b_1040 [Pantoea sp. At-9b]
 gi|316948887|gb|ADU68362.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 367

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 134/335 (40%), Gaps = 3/335 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G    ++  + +     L  +F+ +  A I+     P+ S    K  + +   +++  + 
Sbjct: 9   GFFIVILAIVTVAFFDVLTPYFSAIFWAAILAVIFHPLKSLLRQKMGDRNGLASLVTLLI 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +   PL  +    ++E+  + +K+   +     V   L         + L   HL++
Sbjct: 69  ICLIVFTPLAIVTSSLVVELNTVYNKLQNNSSQFPTVFADLFQHLPDWARNYLSEHHLNN 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              ++    +F    G  ++       G     + +    M+  LFF  +DG  +   + 
Sbjct: 129 AAQIQEKLSSFALK-GGQYMAGSVFVIGKGTFTFTVGFGVMLYLLFFLLKDGAWLVNLIL 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L       +      V R+T  G  ++A+ +G++ G A+W+  +   +  G + A
Sbjct: 188 EALP-LSTHVKHHLLLKFAAVSRATVKGTVVVAVVQGILGGLAFWITDIDGSLLWGALMA 246

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +++IP     I +   +I+    G ++    L  +  + + +VD  LRP LVG   K+P
Sbjct: 247 FLSLIPAIGSAIIWVPAAIFFFATGALWKGLFLVGFFVVVVGLVDNILRPLLVGKDTKMP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                   +GG+   G+ G  IGP++ AL    W 
Sbjct: 307 DYLILIATLGGMEVYGINGFVIGPLIAALFIACWN 341


>gi|254508228|ref|ZP_05120352.1| hypothetical protein VPMS16_2375 [Vibrio parahaemolyticus 16]
 gi|219548845|gb|EED25846.1| hypothetical protein VPMS16_2375 [Vibrio parahaemolyticus 16]
          Length = 359

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 140/359 (38%), Gaps = 4/359 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+     K        +
Sbjct: 2   KITSSHWVLITALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWIEKKLPNHPNISS 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASEL 122
           +++ V +  + +VPLLF+F   + +       V     HG I        +  G+     
Sbjct: 62  LLSCVVLTFIIVVPLLFVFAAIVQQGSAFSQNVYQWVTHGGIQTLFEHPWVVKGLSLVNT 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +              T     +   +++      ++ +    M+  LFF  RD  
Sbjct: 122 YLPFDTVEPQEIAQKVGQFATTFGSNLVGISAKILGDATNFLMDFFLMLFVLFFLLRDHD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   K+   V +V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 182 KIISAIRHILP-LSRSQEDKLLDEVEQVSKSAVMGSFLTAIAQGIAGGIGMWLAGFPGLF 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV- 301
              ++     +   G  + +   ++YL + G+   A  L +W    +  +D  LRP L+ 
Sbjct: 241 WGTMMGFASFIPVVGTALIWIPATVYLYLTGDSTWAIFLAIWSIAIVGSIDNLLRPLLMQ 300

Query: 302 -GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       K+  ++   N
Sbjct: 301 GSGNAGMSTLMIFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLDRQDQN 359


>gi|315126962|ref|YP_004068965.1| permease (PerM) [Pseudoalteromonas sp. SM9913]
 gi|315015476|gb|ADT68814.1| permease (PerM) [Pseudoalteromonas sp. SM9913]
          Length = 358

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 114/356 (32%), Gaps = 12/356 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   +P  +    ++  ++  LYF      PVL ALII +           +        
Sbjct: 11  KKFSDPDSVTLLFLLLALVAMLYFFGPLIVPVLVALIIAYLLDWPVVHLE-RFGLKRFTA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I  +  + + +  +LF+      +   LV +     + G      L D    + ++E 
Sbjct: 70  TGIVMLIFIGIMLTLILFIGPVLWQQSSNLVQETPHMVEQGKSFLLDLPDKYPSLISAEQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +   ++  +             +   +       + + + +I + + +FF  +D  
Sbjct: 130 VQSIVVTVETKVLD--------FGQVVLSASLNSLKDAVAWLIYLILVPLLVFFMLKDKV 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +S  +  +          ++   + + I +   G     +  G V   A+ +  +    
Sbjct: 182 ELSASIAKMIP-RQRRLILQVWHEMNQQIMNYIRGKVFEILIVGSVSFIAFTILDLRYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+     +IP       T     + L   G       + +   I   +    L P L
Sbjct: 241 LLGVLVGFSVLIPFVGAALVTIPVAAVALFQFGLETQFWTVLIIYGIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               + L  +     ++      G  G+F    L +L+  +        +E  +++
Sbjct: 301 FSEAVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALINAWSSKHEELAQEL 356


>gi|310829602|ref|YP_003961959.1| hypothetical protein ELI_4054 [Eubacterium limosum KIST612]
 gi|308741336|gb|ADO38996.1| hypothetical protein ELI_4054 [Eubacterium limosum KIST612]
          Length = 415

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 51/368 (13%), Positives = 111/368 (30%), Gaps = 23/368 (6%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-----------KEESSTFLA 63
            I+  +   +        P++   ++ +  +        K            +       
Sbjct: 35  FILSAVSHVVGSAFEILLPIIMGAVLAYFLFRPMRWIEKKAFKYIKGSEKKPKLVRLLAV 94

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  V  + + I+ +       +  +  LVS +             LS   G        
Sbjct: 95  LVIYVITIIVVILFMYISIPAIIDSVVGLVSSIPTYAAEINTFLINLSQRGGFFKDLVDM 154

Query: 124 TKHLSHPQSLKILSET--------FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +            +T           +  +  I   A  F      + +  + +  + F
Sbjct: 155 IQLDLSSVQNLNAKDTMDFIFGNMNFNSESVKQIGNIAVGFAKGTTSFLIGFVAVFFSGF 214

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKK----ISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +   D  +I  QL  L   +             R +  V    F G  + +   GL+   
Sbjct: 215 YLMLDKENIESQLKRLNRAIMSPKANNGFNWAIRTIDGVFYKYFSGKIMTSALIGLICYI 274

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
              +  V     + ++  +  +IP   PI      I+L +  +   A  + +W       
Sbjct: 275 GLLVLRVEYAPLIALVVGVTNVIPYFGPIIGAIPGIFLTLLYSPAKALGVAIWILAVQQF 334

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L P ++G  ++L      F ++ G    G LG+F+     A+I V   E+++  + 
Sbjct: 335 DGNVLGPNVLGKIVELNPFWVLFCVMVGGSLFGPLGMFVAIPFFAVIKVFVTEALVRWER 394

Query: 352 NKEKISSN 359
            K  +   
Sbjct: 395 RKTTVQEE 402


>gi|238757756|ref|ZP_04618939.1| hypothetical protein yaldo0001_35130 [Yersinia aldovae ATCC 35236]
 gi|238703999|gb|EEP96533.1| hypothetical protein yaldo0001_35130 [Yersinia aldovae ATCC 35236]
          Length = 367

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 138/357 (38%), Gaps = 4/357 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R T L         IM +I+ S + ++ F      A ++   +WP+   F          
Sbjct: 7   RRTDLPKLMFGVIFIMIMIVSSFWVVQPFIMGFAWAGMVVIATWPLLIRFEKLLWGKRWL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++ T+ ++ LF++P+  L    +     +++     ++   P   WL  IP       
Sbjct: 67  AAIVMTMLLILLFVIPIALLVSSLVENSGPVIAWASSPSKLHFPEMNWLQSIPMIGSKLY 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L       +L++       +     +          + + +  M++     Y  G
Sbjct: 127 SSWHTLVAGGGNALLAK---VQPYVGATATWLVAQAAHVGYFVIHLALMVLFSTLLYFHG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+   
Sbjct: 184 EQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I  +   G  +      I+L   G+    T L +W  I    +D  LRP+L+
Sbjct: 244 TLLTVLMFICCVAQLGPLLILVPAVIWLYWTGDTTWGTVLLVWSCIV-GTMDNVLRPYLI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I  
Sbjct: 303 RMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESIKD 359


>gi|239906620|ref|YP_002953361.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239796486|dbj|BAH75475.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 370

 Score =  128 bits (323), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 128/347 (36%), Gaps = 2/347 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  ++   + ++   L  F   ++  +++     P+            T  A++ T  
Sbjct: 11  VFLLLILAGALSLAAIVLAPFVNILIIGVVLAALFRPVQRRVERLCGPRPTLAALLTTGL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +    I+P+ F     + +  + V+ +                 I   M   +     L 
Sbjct: 71  IFTCIIIPIFFFLGSLLAQGVQSVNALQAQLAATDFNKLFSHEAISPYMDWVQEHLPFLD 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +         +       +    ++         ++ + ++  LFF  RDG  + Q+L
Sbjct: 131 LKKLALQADLIDISKTAGQMLIDSGTKIIGNVFVLTMNFVILMFVLFFLIRDGERMMQRL 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   L      +I R +  V +S  LG   IA+ +GL  G   ++ G+       ++ 
Sbjct: 191 RYLLP-LTTDQENRIFRQLDDVAKSVILGAFFIALAQGLAGGIGLFIVGIKPFFWGCMMG 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               +   G  I +  V+IYL++ G+      L  WGA+ +  +D  +RP L+     + 
Sbjct: 250 FASLIPVVGTAIIWLPVAIYLMLTGHWQWGLFLMGWGAVVVSGIDSIIRPLLMQNRSNMS 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               F  ++GG++  G LG+  GP+++    V+        +   E+
Sbjct: 310 TFWVFLSIIGGIKFFGALGILYGPLILGFAMVMLTLYAEDYRHVLEE 356


>gi|169833984|ref|YP_001694326.1| membrane protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172079628|ref|ZP_02709700.2| membrane protein [Streptococcus pneumoniae CDC1873-00]
 gi|183603137|ref|ZP_02710328.2| membrane protein [Streptococcus pneumoniae CDC1087-00]
 gi|183603448|ref|ZP_02717170.2| membrane protein [Streptococcus pneumoniae CDC3059-06]
 gi|183603463|ref|ZP_02715105.2| membrane protein [Streptococcus pneumoniae CDC0288-04]
 gi|221231652|ref|YP_002510804.1| hypothetical protein SPN23F_07960 [Streptococcus pneumoniae ATCC
           700669]
 gi|225854381|ref|YP_002735893.1| membrane protein [Streptococcus pneumoniae JJA]
 gi|225856539|ref|YP_002738050.1| membrane protein [Streptococcus pneumoniae P1031]
 gi|225858673|ref|YP_002740183.1| membrane protein [Streptococcus pneumoniae 70585]
 gi|225861234|ref|YP_002742743.1| membrane protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|307127576|ref|YP_003879607.1| membrane protein [Streptococcus pneumoniae 670-6B]
 gi|168996486|gb|ACA37098.1| membrane protein [Streptococcus pneumoniae Hungary19A-6]
 gi|172042061|gb|EDT50107.1| membrane protein [Streptococcus pneumoniae CDC1873-00]
 gi|183571061|gb|EDT91589.1| membrane protein [Streptococcus pneumoniae CDC1087-00]
 gi|183574547|gb|EDT95075.1| membrane protein [Streptococcus pneumoniae CDC0288-04]
 gi|183576959|gb|EDT97487.1| membrane protein [Streptococcus pneumoniae CDC3059-06]
 gi|220674112|emb|CAR68631.1| putative membrane protein [Streptococcus pneumoniae ATCC 700669]
 gi|225721093|gb|ACO16947.1| membrane protein [Streptococcus pneumoniae 70585]
 gi|225722598|gb|ACO18451.1| membrane protein [Streptococcus pneumoniae JJA]
 gi|225725554|gb|ACO21406.1| membrane protein [Streptococcus pneumoniae P1031]
 gi|225726469|gb|ACO22320.1| membrane protein [Streptococcus pneumoniae Taiwan19F-14]
 gi|301794007|emb|CBW36405.1| putative membrane protein [Streptococcus pneumoniae INV104]
 gi|301799865|emb|CBW32440.1| putative membrane protein [Streptococcus pneumoniae OXC141]
 gi|301801697|emb|CBW34403.1| putative membrane protein [Streptococcus pneumoniae INV200]
 gi|306484638|gb|ADM91507.1| membrane protein [Streptococcus pneumoniae 670-6B]
 gi|327390226|gb|EGE88569.1| hypothetical protein SPAR5_0835 [Streptococcus pneumoniae GA04375]
 gi|332077287|gb|EGI87749.1| hypothetical protein SPAR148_0823 [Streptococcus pneumoniae
           GA17545]
          Length = 343

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 112/335 (33%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L    + + + PI +      + +     +I   +++   ++ +
Sbjct: 4   LINPFVSVLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 63

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 64  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 117

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 118 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 177

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 178 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 237

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 238 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 297

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +     +++  I K      + +K
Sbjct: 298 SSNIYGVVGMIVAVPTYSILKEISKFLSRLYENHK 332


>gi|145300900|ref|YP_001143741.1| permease [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853672|gb|ABO91993.1| putative permease [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 362

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 142/357 (39%), Gaps = 6/357 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++  L    +    +  +I+     L+ F   ++ A +I   +WP+             
Sbjct: 3   MKKVDLAKITLGVLFLSILIISCFMVLRPFLPALVWATMITIATWPLMRMVQRLLWGKRM 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A+  T+ ++ +F++PL         +   L+      +    P   WL  IP  G   
Sbjct: 63  LAALFMTLVLLLMFVIPLFMALANVAEQAPMLIELGTTISHSPPPELLWLQQIPLVGTKL 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E W + L+    +              ++   A   G++F+ + L++    +       
Sbjct: 123 YEFWQQILASGGQVLFTKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGVLYH---- 178

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L        + +  + IR+  +G+ + A+ +  V G    +AG+P
Sbjct: 179 SGEMVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGIGLLIAGIP 238

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L V+  ++ +   G      A   YL   G+    T L +W       +D  LRPF
Sbjct: 239 YTMVLVVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLFA-GTMDNILRPF 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L+     LP +    G++GG+ TMG++GLFIGPV++A+   +    +   ++   + 
Sbjct: 298 LIKRGADLPLILILVGVIGGLLTMGIIGLFIGPVVLAVGYTLLDAWVREDEQAAAEP 354


>gi|290475511|ref|YP_003468399.1| putative transport protein [Xenorhabdus bovienii SS-2004]
 gi|289174832|emb|CBJ81633.1| putative transport protein [Xenorhabdus bovienii SS-2004]
          Length = 369

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/334 (19%), Positives = 130/334 (38%), Gaps = 6/334 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + L  F    + + ++   +WP+                 I T+ ++ LF++P+  L 
Sbjct: 27  CFWVLSPFVLGFIWSGMVVIATWPLLEKLQQHLWGKRWIAVSIMTLLLVLLFVIPIALLV 86

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              +     L+      +   +P   WLS IP  G      W   ++   ++ +      
Sbjct: 87  SSLLENSTPLIEWAKSPSTFQLPQLEWLSRIPVIGEDLYVKWQDTVADGSNILLTKIPPY 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 +    A+  G     +   ++ M++     Y  G  +   +      L      
Sbjct: 147 IGKTATWFFTQAANAGR----FLFHLVLMVLFSVLLYWKGEQVMLSIRHFAIRLADQRGD 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +  +  + IR+  LG+ + A+ + +  G    +AG+P  + L V+  I  +   G  + 
Sbjct: 203 AVVLLAAQSIRAVALGVVVTALVQAIAGGIGLAIAGIPYAMILTVLMFICCVAQLGPLLV 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                 +L   G     T L +W  +   +    LRPFL+     LP +    G++GG+ 
Sbjct: 263 LVPSIAWLYWTGETTWGTVLVIWSLVLTTMDG-VLRPFLIRLGADLPMVLILTGVIGGIL 321

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++GL+GLFIGPV++A+   +    +  + + + K
Sbjct: 322 SLGLIGLFIGPVVLAVSYRLLLAWMNEVPKPENK 355


>gi|254712287|ref|ZP_05174098.1| hypothetical protein BcetM6_02689 [Brucella ceti M644/93/1]
 gi|254715358|ref|ZP_05177169.1| hypothetical protein BcetM_02704 [Brucella ceti M13/05/1]
          Length = 352

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAVFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|210633874|ref|ZP_03297889.1| hypothetical protein COLSTE_01806 [Collinsella stercoris DSM 13279]
 gi|210159043|gb|EEA90014.1| hypothetical protein COLSTE_01806 [Collinsella stercoris DSM 13279]
          Length = 455

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 108/313 (34%), Gaps = 2/313 (0%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            F + PI + F   +       A++  V V+   ++    +      ++ +L+       
Sbjct: 53  AFVASPIVNWFERHRV-PRGAGALVGLVVVIVGLVLLFALVIPMVTAQLIDLLRDAPSKL 111

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                    + +    +       +  S   + + ++   L +  +  +           
Sbjct: 112 AALGAWVVRMENEYAVIEHLNDVVQLDSIFTAAQDITNQAL-SGLLAAVRDGIVPMVNNI 170

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
                 +    +  F+   D   I+ ++  +  H     ++ +  +V + +        I
Sbjct: 171 ASTVFIVFLGFVLAFWLACDYPRINDEICRILPHDKADDYRLMVAVVSRSVGGYLRSTVI 230

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            ++ +G +    + + G P   A+GV++ ++ +IP   P     ++  + +  +   A  
Sbjct: 231 NSVIQGFLAFVGFAIVGHPYAAAMGVLSGVLNIIPVVGPSISAIIATLIALVYSPMMAVW 290

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +   +   I D  + P +    +++  + +   LV G    G +G+ +   L+A+I  
Sbjct: 291 TMIMAMLSQNITDNVIAPKINQSTMQVHPVLSLTALVVGSTFGGAVGMIVALPLVAVIKS 350

Query: 341 IWKESIMAIKENK 353
           ++          +
Sbjct: 351 LFIFYFETRTGEQ 363


>gi|238783850|ref|ZP_04627868.1| permease perM [Yersinia bercovieri ATCC 43970]
 gi|238715237|gb|EEQ07231.1| permease perM [Yersinia bercovieri ATCC 43970]
          Length = 362

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 118/355 (33%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 18  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRLW 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 77  AATIVLVVFGGITLLAVFVVAPTVWQQGNNLISDMPKMLNKFNAFAQTLPSRYPAL---- 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + + LFF  +D 
Sbjct: 133 ----VDAGIVDMMAENLRNKLSGMGESVVKFSVASLIGLLTLAIYLILVPLMLFFLLKDK 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 189 EQMLNAVRRVLP-RNRGLAGQVWLEMNQQITNYIRGKVVEMVVVGIATYLVFFIMGMNYS 247

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 248 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGLGADFWTLFVAYLVVQGLDGNLLVPV 307

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     ++      G  G+F    L  L+  +       +    +
Sbjct: 308 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEELALEAD 362


>gi|296114291|ref|ZP_06832945.1| hypothetical protein GXY_00868 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295979052|gb|EFG85776.1| hypothetical protein GXY_00868 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 425

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 112/352 (31%), Gaps = 11/352 (3%)

Query: 1   MRETMLNPQGI-MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           MR T ++ +   +  + +  +  +LYF      P++ AL++             K +   
Sbjct: 32  MRHTRMDLKTACLLVLCILAVFYTLYFAASIILPMILALVVNLLLSSPMRFLHLKLKLPK 91

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A++  + V  +       +       ++     +    +    +   +  +      
Sbjct: 92  PLAALVLILGVFGVVGAIGTAISVPAAGWIERAPEAMNALGERLAFLRGPIHLLNTASAR 151

Query: 120 SELWTKHLSHPQSLKILSETFLKTN-------GIDFIPRFASRFGMIFLDYCLSIIFMII 172
            E +             +      +              F S   +    +      MI+
Sbjct: 152 IESFMNIAGSHLDHATKAGGDDAEHIVMSTAPASGGFDSFGSSLLLGTRAFVGQFFTMIL 211

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            LFF    G S+ ++   +           +I+  + + +      +TII    GL    
Sbjct: 212 MLFFLLAQGDSLLRRFVEIMPTFADKRRTVQIAYQIERNVSLYLATITIINFLVGLANML 271

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIEL 289
             WL G+P+ +  GV+  ++  IP   P+    +     L    ++  AT          
Sbjct: 272 QCWLLGMPNPLLWGVMAFLLNYIPIIGPMMGITIYFLVGLFTFPSVLQATLPPAIYLCIH 331

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               +T+ P ++     L  +     L+      G+ G F+   L+A+  +I
Sbjct: 332 LTEGETITPMVLARRFTLNPVLVMGSLMFWDWLWGIGGAFLSVPLLAVFKII 383


>gi|239943929|ref|ZP_04695866.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239990383|ref|ZP_04711047.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291447394|ref|ZP_06586784.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291350341|gb|EFE77245.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 460

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 96/321 (29%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   L  L  +            +AL++     P       +          +  
Sbjct: 85  WRLLVLAGTLWVLMRVISAVQLVVLAFAAALLVTAMLQPTVVRL-KRFGLPHGLATAVTA 143

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +  +   F+ +  M  +  L  +V                     WA +      
Sbjct: 144 VLGFVIIGLVGWFVVWQVMENLDTLSERVRDGIDELKR------------WALDSPFHVT 191

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         + I     +   + +++   ++  + +  F   DG  I + 
Sbjct: 192 ESQINDIAKNLNDTIGTNTEEITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEW 251

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  ++A+ + + +G   ++  VP  V L V 
Sbjct: 252 SLKLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALIDAIFIGFGLYVLNVPLAVPLAVF 311

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   ++ A    +       I    L+PF++G  ++
Sbjct: 312 IFLFAFIPLVGAVVSGALAVVVALVTEGVWTALWALVVVLAVQQIEGHILQPFILGRAVR 371

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 372 VHPLAVVLAVATGGLVAGIGG 392


>gi|304440319|ref|ZP_07400208.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371071|gb|EFM24688.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 415

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 133/354 (37%), Gaps = 7/354 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +   I+ +I      LK  F  +  A+I+ F   P+ +    K      +  +I   +
Sbjct: 62  GFICLFIVLMIFNKYKILKDTFFSIFIAMILAFIINPLVTKLEGK-GIKRGYGVIIVYFA 120

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +  V +  +    + E+ +LV++              +S     ++  +++T     
Sbjct: 121 FLLILTVLIATVIPKTVQELTKLVAQAPATLDILSIKAEEISKSLAKIFEGKMFTGFNPS 180

Query: 130 PQSLKILSETFL------KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             +L                + +    +  +      L   + +  +++  ++F  D   
Sbjct: 181 DMNLVETFGDKFLEILKKSQDLMISNLKNIATGISTVLYSFVKLFIVLVFSYYFVVDKDK 240

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I  ++  L    +      +S  V + +     G  ++A+  G++   A  + GV   V 
Sbjct: 241 IKSKVVELIPEKYKRDVLFVSVRVNEALLGFVKGRLLMAVFVGILTMIALLIIGVDFAVI 300

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +G+IT +  +IP   P      +I   +  +   A    +      +  +  L P L+G 
Sbjct: 301 IGLITCVADIIPYIGPFLGFVPAILFALIESPMKAVWAGIIFLAIQWAENNILAPKLLGD 360

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            + L  L     ++ G    G+LG+ +G  +++++ ++ +   +   E K +I+
Sbjct: 361 RVGLNPLVILLSIIIGGGMFGVLGMILGVPVVSIMMILIEFFKLKYNEKKAQIN 414


>gi|23097847|ref|NP_691313.1| hypothetical protein OB0392 [Oceanobacillus iheyensis HTE831]
 gi|22776071|dbj|BAC12348.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 383

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 116/344 (33%), Gaps = 5/344 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    +  +K    P++ A +  +   PI +    K +    +      V ++ +  
Sbjct: 40  ISFVFTPFVVLIKTVILPLILAAVAFYLLNPIVNYLEKK-KIKRIYSIFGLYVIIIGILT 98

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V ++ +      ++  L+  +         +   L        +  L   ++S       
Sbjct: 99  VIIVSVIPVLREQIMSLIENLPPFISDIEDMVEDLIGSQVLNQSQILSNLNISSFVEQIS 158

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                L       I            +  L+I+ +   LF+  +DG  +           
Sbjct: 159 NKLLDLVDTAFSNIGGVIGTVT----EIVLAIVTLPFILFYLLKDGDKLPGYFLKFLPVS 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F      + + +   I +   G  I+A   G+++   + +  +     L +I A   ++P
Sbjct: 215 FRDQTYTVLKEMNNQISAYIRGQIIVAFCIGVLMYIGFMIIQLDYAPVLALIAAFTTVVP 274

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++ + I  + F    L     I   +  K + P ++G  +++  +   F 
Sbjct: 275 YIGPAIAITPALIVAIVTSPFMLIKLIAVWTIVQLVEGKFISPQIMGRNLRVHPITIIFI 334

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++      G++G+ +     A++ VI       IK   +  + +
Sbjct: 335 ILTAGNLFGVVGILLAIPGYAILKVITTHIFEFIKRRSKLYNED 378


>gi|148258479|ref|YP_001243064.1| hypothetical protein BBta_7289 [Bradyrhizobium sp. BTAi1]
 gi|146410652|gb|ABQ39158.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 353

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 77/349 (22%), Positives = 152/349 (43%), Gaps = 3/349 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   +++   L   + L  F+  +L +++      P+Y       ++  +  A    + 
Sbjct: 7   RVFVSLVVTGSLAFGWILWPFYGAILWSVVAAVVFAPLYRRLSQAMQQRHSLAAAATVMI 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L I+PL  L      E   +  +V       +   + + D      A  L    L+ 
Sbjct: 67  IVTLVILPLTLLSVTLAREASNVYGRVQSGELDLVRSFQQILDGLPDWMARVLDHFGLAI 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              ++    + L   G  F+       G     + +++  M+  LFF +RD  ++S+++ 
Sbjct: 127 LGGVQEKLSSVLLK-GSQFLAAQTLDIGQRTFGFLVNLFVMLCLLFFLFRDENTLSKRVK 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L P     +      VIR+T  G  ++A+  G + G  + L G+ + +   V+ A
Sbjct: 186 DAIP-LRPERLDALLLKFTIVIRATVKGNLLVALLLGALGGLMFSLLGINASLLWAVLIA 244

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++++P     + +  V++YLL  G I+    L ++GA+ + +VD  LRP LVG   K+P
Sbjct: 245 FLSLLPAIGSGLVWVPVAVYLLATGAIWQGVVLIVYGALVIGLVDNLLRPMLVGKDTKMP 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               FF  +GG+   G+ G  IGPV+ A+    W+   +  + N + I+
Sbjct: 305 DYVVFFSTLGGIEAFGINGFVIGPVIAAMFIAAWETFSVLRQRNDDAIA 353


>gi|86608241|ref|YP_477003.1| hypothetical protein CYB_0757 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556783|gb|ABD01740.1| putative membrane protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 417

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 107/305 (35%), Gaps = 5/305 (1%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +         V+  +S++       L +      + + L++++    +    +    
Sbjct: 52  LAERLRIPRWLGVVLVYLSLIAGIAGLALLIGPTVATQTQRLLTRLPFYLEQLQLLVDTW 111

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                G+  + L   +        +             +   +  F    L   L+ +  
Sbjct: 112 IADLAGVDPAALDYLNQLLDPQSLMSW----AVRSGQRVLVQSFDFTRGLLGGLLTTVLT 167

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +    +    G  + + L  L  + +     +    + + +     G  +++   G+++ 
Sbjct: 168 LFISGYMLVSGSDLVRGLVELFPYPWNDRLAQQVHPMAQRMGGYIQGRVLVSAILGVMIT 227

Query: 231 SAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            +    G+    +ALGVI     +IP   P+  +  ++ + I    +    + +      
Sbjct: 228 VSLRFLGLSEFALALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILYVAVQ 287

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L P LVG  +++  L     ++GG + +G++G  I P  +A +AV+ +   +  
Sbjct: 288 NLETYVLDPLLVGSSVRVKPLYQLLAVLGGTQLLGIVGAVIAPPWVAGMAVLLENLYLKP 347

Query: 350 KENKE 354
           K+  E
Sbjct: 348 KQEAE 352


>gi|134278850|ref|ZP_01765563.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167905924|ref|ZP_02493129.1| hypothetical protein BpseN_27051 [Burkholderia pseudomallei NCTC
           13177]
 gi|134249269|gb|EBA49350.1| putative membrane protein [Burkholderia pseudomallei 305]
          Length = 356

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 158/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAALLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +    Q GIP P  LS +P G   +  W +      +  +   T +K
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWQA---NLAKPLHPATAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY LAG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYALAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|313890047|ref|ZP_07823682.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121408|gb|EFR44512.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 393

 Score =  128 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 122/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF--------------FAPVLSALIIGFTSWPIYSS 50
           +LN + ++   ++ +I V ++                     P++ + I+ + + P+   
Sbjct: 18  ILNNKAVVSLFVLLLIFVIIFVFTKISFLFASLGSFLTILMLPLVISTILYYLTKPLVDG 77

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
             +    + T    I    ++CL +     L      ++   ++ +             L
Sbjct: 78  IEN-LGPNRTTSIAIVFALILCLLVWAFASLIPMIGNQITTFIADLPKYIGTVNKEANKL 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            +    +         +++     I        N  ++   FAS          +SII  
Sbjct: 137 LENDWLVSYRTELQDMVTNISKKAIDYAETFSKNAFEWAGSFASAIAR----ITVSIIIS 192

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              +F+F RD   +   L ++          ++   + K +     G   +AI  G +  
Sbjct: 193 PFIIFYFLRDSSKMKDGLVNVLPTKVRVPISRVLGDINKQLAGYVQGQVTVAIIVGFMFA 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + L G+   +   ++  ++ M+P           + + +         + L   IE  
Sbjct: 253 IMFSLVGLKYSITFAIVAGVLNMVPYLGSFLAMVPVVIMALVQGPLMLVKVLLIFTIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+F+   + A + VI KE     K
Sbjct: 313 IEGRFVTPLVLGNKLSIHPITIMFLLLTSGAMFGVWGVFLIIPIYASLKVIVKELFDWYK 372


>gi|121594188|ref|YP_986084.1| hypothetical protein Ajs_1821 [Acidovorax sp. JS42]
 gi|120606268|gb|ABM42008.1| protein of unknown function UPF0118 [Acidovorax sp. JS42]
          Length = 381

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 3/333 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
                L      +   +++     P++     +        A+      + + I+P+  +
Sbjct: 50  AFGAILWPLNGAIFWGVVLAILFTPLHRRLQRRMPRRRNLAALATLGVCLVIVILPVTLI 109

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E      +      +     + +       W  EL  +     ++      T +
Sbjct: 110 GASLVQEASVAYERARSGQLNFGAYLQQVLAALP-PWMLELLDRFHLTTRAELQARLTTI 168

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 F+   A   G   L + +S   M+  LFF  RDG  ++ ++          + +
Sbjct: 169 GAQASQFLATKALDVGQNTLQFVVSFGVMLYLLFFLLRDGARLAARIREAIPLDAR-HKE 227

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           +++     VIR+T  G  ++A  +G + G  +WL  +   V  GV+ A ++++P     +
Sbjct: 228 QLAIKFTTVIRATVKGNIVVAAAQGALGGLIFWLLNIQGPVMWGVLMAFLSLLPAVGASL 287

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+IY L  G    A  L  +G   + +VD  LRP LVG   KLP        +GG+
Sbjct: 288 IWGPVAIYFLATGAPGQAVILTAYGVFVIGLVDNVLRPVLVGKDTKLPDYVVLISTLGGM 347

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              GL G  IGP++ AL    W          +
Sbjct: 348 ALFGLTGFVIGPMIAALFIATWDLFAPHDGAER 380


>gi|23500209|ref|NP_699649.1| hypothetical protein BRA0460 [Brucella suis 1330]
 gi|161620528|ref|YP_001594414.1| hypothetical protein BCAN_B0462 [Brucella canis ATCC 23365]
 gi|254699715|ref|ZP_05161543.1| hypothetical protein Bsuib55_02471 [Brucella suis bv. 5 str. 513]
 gi|254702852|ref|ZP_05164680.1| hypothetical protein Bsuib36_02714 [Brucella suis bv. 3 str. 686]
 gi|254706027|ref|ZP_05167855.1| hypothetical protein BpinM_03248 [Brucella pinnipedialis
           M163/99/10]
 gi|254720517|ref|ZP_05182328.1| hypothetical protein Bru83_13551 [Brucella sp. 83/13]
 gi|256015243|ref|YP_003105252.1| hypothetical protein BMI_II457 [Brucella microti CCM 4915]
 gi|256029693|ref|ZP_05443307.1| hypothetical protein BpinM2_03388 [Brucella pinnipedialis
           M292/94/1]
 gi|256157846|ref|ZP_05455764.1| hypothetical protein BcetM4_03193 [Brucella ceti M490/95/1]
 gi|256253192|ref|ZP_05458728.1| hypothetical protein BcetB_02609 [Brucella ceti B1/94]
 gi|260167217|ref|ZP_05754028.1| hypothetical protein BruF5_02324 [Brucella sp. F5/99]
 gi|23463812|gb|AAN33654.1| membrane protein, putative [Brucella suis 1330]
 gi|161337339|gb|ABX63643.1| Hypothetical protein BCAN_B0462 [Brucella canis ATCC 23365]
 gi|255997903|gb|ACU49590.1| hypothetical protein BMI_II457 [Brucella microti CCM 4915]
          Length = 352

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|241895545|ref|ZP_04782841.1| permease [Weissella paramesenteroides ATCC 33313]
 gi|241871123|gb|EER74874.1| permease [Weissella paramesenteroides ATCC 33313]
          Length = 382

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 109/343 (31%), Gaps = 4/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI      F     AP++ A +  F   P+      +          I  + +  L I
Sbjct: 40  VAFIFDPVAEFFSAVGAPIIIAGVFYFLLNPMVDWAERRFNFPRIATISIQFIVLAVLII 99

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L     +   ++  LV++        + +    +        ++ +    S   +   
Sbjct: 100 WGLAVFIPWMSSQIISLVNEWPTYWHKIVTMINHFTSNKQFNAVNKWFNTTNSEISTWLK 159

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G+  +         + +            LF+  +DG  +   +       
Sbjct: 160 DYSAEYAKKGLHGVSSVVGTVTSVVIAIIT----FPFVLFYLLKDGHQMPAYIAKFLPVK 215

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + ++ + +   I +   G   +A    ++    Y + G+P    + ++  I+ +IP
Sbjct: 216 ARRSFLEMLKEISTQISNYIRGQISVAFAVMIMFAIGYTIIGLPYGWLIAIVAGILNIIP 275

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ + I  +      + +   IE  +  + + P L+G  +K+  +     
Sbjct: 276 FLGSFLAMVPAVVVGIFVSPVMLISVLVVFMIEQTLEGRIISPKLLGSSMKIHPVTVLIV 335

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+      G+LG+  G    A++ V+        + + +    
Sbjct: 336 LLSAGNIFGILGVIFGVPGYAILKVLIYRFYNWWQTSSDLFKE 378


>gi|332073204|gb|EGI83683.1| hypothetical protein SPAR50_0852 [Streptococcus pneumoniae GA17570]
          Length = 343

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 112/335 (33%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L    + + + PI +      + +     +I   +++   ++ +
Sbjct: 4   LINPFVSVLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLIWGMVIGV 63

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 64  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 117

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 118 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 177

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 178 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 237

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 238 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 297

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +     +++  I K      + +K
Sbjct: 298 SSNIYGVVGMIVAVPTYSILKEISKFLSRLYENHK 332


>gi|304407564|ref|ZP_07389216.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
 gi|304343515|gb|EFM09357.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
          Length = 356

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 119/356 (33%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA-----------PVLSALIIGFTSWPIYSSFISKKEE 57
           +  +  ++  II+  L  LK  F            P   A+II +   P+ S    + + 
Sbjct: 11  RTFIYIILGLIIVYMLLLLKPIFMEIYAFLRAVLAPFFIAMIISYVLNPVVSLLHVR-KM 69

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T   ++          V L+      M +++EL             +   L++     
Sbjct: 70  PRTVAVLLIYTVFCGSLTVVLMNAVPMFMEQLQELNRHAPELTVRAQNLVENLNNNSLMP 129

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
            +      +  +    K+    F   N I              ++    +  +    F+ 
Sbjct: 130 ESIRSGINNSLYKMEKKLSESVFDFVNNIG-----------AMVNVVFILFIIPFLAFYI 178

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D     + + +           ++ + +   + S   G  I+ +  G++    YW+ G
Sbjct: 179 LKDFEVFERTVITYVPKSHRQQTVRLLKDIDAALGSYIRGQFIVCLIVGVLAYLGYWIIG 238

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P  + L  + AI  +IP   P    A ++ +    ++     + +   +   +    + 
Sbjct: 239 MPYPLLLAAVVAITNVIPYLGPFIGAAPALLMAATISVKMMILVVVVNTLCQILESNVVS 298

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P +VG  + +  L     L+ G    G++G+ +   + A + V+ +         K
Sbjct: 299 PQVVGRTLHMHPLSIILALLVGGELAGIVGMILAVPIFAALKVVVQHMFAYYVRRK 354


>gi|322387990|ref|ZP_08061597.1| membrane protein [Streptococcus infantis ATCC 700779]
 gi|321141263|gb|EFX36761.1| membrane protein [Streptococcus infantis ATCC 700779]
          Length = 387

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 111/335 (33%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + FL     PV+ + ++ +   P+        + +      I  + +  L I
Sbjct: 42  ISFLFFPVIDFLSVVMLPVILSGLLFYLLNPLVDLMEKY-KINRVLAISIIFIIIAILLI 100

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L         ++      V    +    V   L              + L++  +   
Sbjct: 101 IGLAVAIPNLQRQVVIFAQNVPSYLEDADRVIGDLVTKRLPDDFRPQLEQVLANFSTQAT 160

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + + +  ++++    S    + +        M   LF+  RDG  +   +     + 
Sbjct: 161 AWASNISSKAVNWVSALISGTSQVIVALI----IMPFMLFYLLRDGKGLRDYITQFLPNK 216

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 K+   V + + +   G   +A+   ++    + + G+   V LG+    + ++P
Sbjct: 217 LREPVGKVLSEVNQQLSNYVRGQITVAVIVAIMFIIFFKIIGLRYAVTLGITAGFLNLVP 276

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     ++ L +         + +   +E  I  + + P ++G  + +  +   F 
Sbjct: 277 YLGSFLAMIPALVLGLIAGPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPITILFV 336

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L+      G+ G+ +G  + A   V+        K
Sbjct: 337 LLTSGSMFGIWGVLLGIPIYASAKVVISAIFDWYK 371


>gi|256396649|ref|YP_003118213.1| hypothetical protein Caci_7547 [Catenulispora acidiphila DSM 44928]
 gi|256362875|gb|ACU76372.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 392

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/342 (11%), Positives = 101/342 (29%), Gaps = 14/342 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +  + ++  +  L    + ++ A+       P+ +  +++          +  + V
Sbjct: 64  AAGAITAYALVHLVSGLGSLLSVLMLAVFFATALDPMVTGLVNR-GLRRGLAVFVVAMGV 122

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + LF   +  +F     E+  L++ +            +L  +       E     ++  
Sbjct: 123 LALFAGFVAVIFPPIDREVNSLINAIPGYLNDLRNKSTYLGKLENKYHLIEKVKSWIN-- 180

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                                     G          +  I   F+F  +   I      
Sbjct: 181 -----------SNKAGTLDLNGILGAGKAVFSLLTGTLAGIALTFYFVANMPGIKNFAYH 229

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L          +++  +   +    +G  IIA   G           +P   ALG++ A+
Sbjct: 230 LVPVRRRPRVSELTDRILAQVGKYVIGQMIIASIAGFFTWIWAMAWSIPYPAALGLVVAL 289

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P        AV   + +  ++  A     +        D  + P +    + +  +
Sbjct: 290 FGLVPVVGSSIGGAVVTLVALTVSLKVAIFTLAYYVAARLAEDYLIAPRVNRRTVDVHPM 349

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            T   ++ G    G++G  +       I +I  E ++   + 
Sbjct: 350 VTILAVLVGAALFGIVGALVAIPAAVAIRLIATEVLLPRIDE 391


>gi|167629939|ref|YP_001680438.1| domain of unknown function, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592679|gb|ABZ84427.1| domain of unknown function, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 365

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 109/322 (33%), Gaps = 9/322 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      I+L+  Y L+    P   A ++ +  +P       K   S     +    
Sbjct: 32  RILLVAGFWAIVLLLSYLLRQTLVPFAVAFVLAYLLYPGVVWLE-KGGLSRVVSILAVFA 90

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V   F   + F       E+     ++    Q        +              +  S
Sbjct: 91  VVFGGFASLIAFGMPRIFSELNRFSVQLPQYTQQMQAWLARIQQDMIQSGFPPGIQQVWS 150

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +        ++     A             I+ + +  F+F RD  +I +  
Sbjct: 151 DTLARGEATILAAVRWLLESAVSLAEN--------AFDIVLIPVMSFYFLRDWEAIGKGS 202

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L      A+ + +   V +++R+      ++A+  G++      L G+   + +G+I 
Sbjct: 203 LNLVPQNLRAHVQIVGGEVNRILRAVVRCNFLMALVVGVLTTVGLTLIGLEYSLLIGIIA 262

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  +IP   P+     ++ + +  +   A    L   +   I    L P L+G  + L 
Sbjct: 263 GIADLIPYFGPLIGMVPALVVGLLESPRLALYAVLIMIVVQQIEANLLSPKLLGDSVGLH 322

Query: 309 FLPTFFGLVGGVRTMGLLGLFI 330
            L   F L+ G    G++GL +
Sbjct: 323 PLAVIFALLAGGHLFGIVGLLL 344


>gi|329113453|ref|ZP_08242234.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
 gi|326697278|gb|EGE48938.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
          Length = 363

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 140/356 (39%), Gaps = 3/356 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     + +   ++  I    +  L  F + +L A ++ +T+WP++     +   +    
Sbjct: 5   QPASTERIMRLLLLGGITYGCVLVLAPFSSALLWAGVLAYTTWPLFQHLRRRMGPN--AA 62

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           ++  TV      ++PL FL    +        +V+        +P     I         
Sbjct: 63  SLTMTVLCAVGVVLPLAFLASACVSSGPRWARQVMAFVGTIHELPPLPHWITSLPAFGPD 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            + H              L+    + I        M   +  L ++  +   FFF+  G 
Sbjct: 123 ISHHWERWSRNISSVGDELRPYAGEIIQSLL-EVLMRMANGALHLVMALFIAFFFWLSGP 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   + ++   +      +   IV   +R T  G+   AI +G++ G   WL GV   V
Sbjct: 182 MLWDTVQAVMVRIAGHQAGRHLHIVGSTVRGTVYGILGTAIIQGILTGLGLWLLGVGEAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LGV+ A +A+ P GAP+ +   +++L    +      L L+G + +   D  +RP  + 
Sbjct: 242 ILGVLAAFLAVFPIGAPLVWIPAALWLFGMHHPGKGILLLLYGVLIISGADHLIRPLFIA 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              KLP+L T  G++GG+   G +G+F+GP+L+A+   +  E              
Sbjct: 302 RGSKLPYLLTVLGVIGGLLAFGGVGIFLGPILLAIGFTLTTEFAADEAAQPLAQDE 357


>gi|32475947|ref|NP_868941.1| membrane protein- a permease [Rhodopirellula baltica SH 1]
 gi|32446490|emb|CAD76326.1| putative membrane protein-putative a permease [Rhodopirellula
           baltica SH 1]
          Length = 384

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 112/350 (32%), Gaps = 10/350 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            +       +  +    +  ++Y+L+    P + AL I     PI     ++   +    
Sbjct: 7   RSNPVQDACLLILTAIALTAAVYWLRSVLIPFVVALFIVSGITPILDFLQARLNVNRIVA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI----PGGMW 118
           A +     +    +  + ++       +E     +  ++       WL +          
Sbjct: 67  AGVTFALAIGGTFLVGMSIWLSMAQMSEEGKLYRMRVSEIVSNAEDWLHENVAERFESSE 126

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E     ++        +    +    D +   A+      L+  L      ++   F 
Sbjct: 127 VGERSEAAVADLVEESEATVVPAERQEPDELLANAAADLRDQLEAFLRNAVATLSSELFQ 186

Query: 179 RDGFSISQQLDSLG---EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
               SI   +        +L       ++  V + +RS     T+I++  G+V G A WL
Sbjct: 187 LGSTSIVILIYVFFLLLGNLSGYGENTLAYQVDRQVRSYLFVKTMISLATGIVFGMALWL 246

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIV 292
            GVP  +  G++  ++  IP   PI  +      I L   G++                 
Sbjct: 247 FGVPMALTFGLLAFLLNYIPNIGPILASILPLPFILLHPDGSMLWMIIAIAVTCSIQVAS 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              L P L+G    L  +     L+      G+ G+F+   + A I +  
Sbjct: 307 GNLLEPKLMGNSADLHPVVILLALMFWGTLWGITGMFLATPITAAIKIAL 356


>gi|121605986|ref|YP_983315.1| hypothetical protein Pnap_3095 [Polaromonas naphthalenivorans CJ2]
 gi|120594955|gb|ABM38394.1| protein of unknown function UPF0118 [Polaromonas naphthalenivorans
           CJ2]
          Length = 393

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 118/350 (33%), Gaps = 17/350 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  + +   L  L + +  F P++ +++  +   P+ +    ++       A
Sbjct: 33  PVDVRNLSLVILAILAGLFVLQWARAVFIPIMLSVLFSYAFSPLVNWLEFRRVPRWLSSA 92

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--------LSDIPG 115
           V+     +   +  +    Y   LE  +L+  +  A Q      +         L  +  
Sbjct: 93  VL-----LLAILGAMGSGAYLLRLEAAQLIEALPAAAQKLGRALKSSSGKSESALETVQR 147

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                E  T+  +        +   +       I  +     +  L     +  ++   +
Sbjct: 148 AASQIEQATRESAAVTGPNRGATRVVIEAPRFNIKDYLWTGTVGLLALIGQVTVVVFLTY 207

Query: 176 FFYRDGFSISQQLDSLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F    G +  ++L  L            +    +   I+       + +   G++ G A 
Sbjct: 208 FLMLSGDTFRRKLVKLAGPSLSKKKVTLQALHEISGQIQRYLQVQLLTSALVGVLTGLAL 267

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFI 291
              G+ +  A GV+  ++ ++P    +   A S  +  L  G+I  A  +     +   +
Sbjct: 268 MFLGLENAGAWGVVAGVLNLVPYIGSLITAAASALVAFLQFGSINMALAVGGASVLIHTL 327

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           V   L P+L     +L  +  F GL+      G+ GL +G  ++ ++  +
Sbjct: 328 VGNLLTPWLTSRASRLSPVAVFMGLLAWGWLWGVWGLLLGIPILMIVKSV 377


>gi|323487957|ref|ZP_08093213.1| hypothetical protein GPDM_01390 [Planococcus donghaensis MPA1U2]
 gi|323398381|gb|EGA91171.1| hypothetical protein GPDM_01390 [Planococcus donghaensis MPA1U2]
          Length = 360

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 115/337 (34%), Gaps = 11/337 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
                   F P+L   ++ + + P+ +  + + +       +   +S++ +F +  + + 
Sbjct: 33  LFIIAGTIFVPLLLGGVLFYLTRPVLNFLMKR-KFPKWAAVLTVLLSIILVFYLFFIMIG 91

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  LV       Q      +++ D            + L      ++   T   
Sbjct: 92  PIVTDQINALVDNAPEIIQSVEESAQYIFDQR----------ERLPDSIEEQLNGMTGQI 141

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + +  +  +   F   F+   ++++ +   L +   D       +          + +K
Sbjct: 142 GDRLGDVGGWVVSFIGSFVSGIITLVLVPFFLVYLLVDHKKFVPFVSGFFSGERKGWIRK 201

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               +   +++   G   ++   G++L   Y + G+   + L +I     +IP   P   
Sbjct: 202 TLHDIDDTLQAYIQGQLFVSFLVGIMLLIGYLIIGLDYALLLALIGMATNVIPFLGPYIA 261

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I + +  +   A  + +   +   I    + P ++G  + +  L     ++     
Sbjct: 262 VVPAILIALVEDPIKAVYVGIIMLVAQQIESNFITPNVMGKSLDVHPLTVITLILAAGNI 321

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GL G+ +   + A+I  I K       E +   + +
Sbjct: 322 AGLWGIILAIPVYAVIKTIAKNVYARRIEIRNTATRD 358


>gi|225028666|ref|ZP_03717858.1| hypothetical protein EUBHAL_02945 [Eubacterium hallii DSM 3353]
 gi|224953976|gb|EEG35185.1| hypothetical protein EUBHAL_02945 [Eubacterium hallii DSM 3353]
          Length = 399

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 113/351 (32%), Gaps = 14/351 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTF---LAVIA 66
           +I+  L  +     P L  ++  +   P+ +    K          +          VI+
Sbjct: 35  VIISVLKGITEILKPFLYGVVFAYLLAPLCNKIEEKLFQIFPKAKTKARRFICFIAIVIS 94

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWT 124
               + +  + ++ +       + +++  V             + +    +     E  +
Sbjct: 95  LCVAIAVIWLIIMMIIPQVWDSVMKIIQMVPQKLIVVNNWIEHMLENQPELQAYFEEFSS 154

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +  S+  SL  +       + I+ +         +  +  L ++     L      G   
Sbjct: 155 QAESNIDSLLNVDTIQKVQSIINSLSVQLFGVLGVVKNIFLGLLISAYLLGSRKLFGAQA 214

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L  +    +    ++  R   K+     +G  I +   GL+  +   + G  +   +
Sbjct: 215 GLILHGVFSDKWAKIIEEEIRYTDKMFNGFLVGKIIDSAIIGLLCFAGTSIMGFEAPAFI 274

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI  I  +IP   P         LL+  N  +     ++  +   +    + P ++G  
Sbjct: 275 SVIIGITNIIPFFGPFIGAIPCGLLLLLENPMHCLYFIIFIFVLQQLDGNVIGPKILGNT 334

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +      F ++      G++G+ IG  L A+I  I ++ +       ++
Sbjct: 335 TGVSSFWVLFAILLFGGMWGVVGMVIGVPLFAVIYDIIRKLVYRGLRKHKR 385


>gi|162419988|ref|YP_001607006.1| putative inner membrane protein [Yersinia pestis Angola]
 gi|162352803|gb|ABX86751.1| putative membrane protein [Yersinia pestis Angola]
          Length = 365

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 138/345 (40%), Gaps = 6/345 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             IM +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ L
Sbjct: 19  IFIMGMIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILL 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+  L    +     L+      +   +P   W+  IP            L    + 
Sbjct: 79  FVIPIALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGAN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            ++++         F+ + A         + + +  M++     Y  G  ++  +     
Sbjct: 139 ALMAKVQPYIGATWFVAQAA-----HVGYFLIHLALMVLFSVLLYIHGEQVALGIRHFAM 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  +
Sbjct: 194 RAADKRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICCV 253

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G  +      I++   G+    T L +W  I   + D  LRP+L+     +P +   
Sbjct: 254 AQLGPLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTL-DNFLRPYLIRMEADMPMILIL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G++GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 313 SGVIGGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 357


>gi|161501878|ref|YP_049952.2| putative inner membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 370

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 139/355 (39%), Gaps = 6/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+   F +      +   ++
Sbjct: 12  LARILFSLVFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLV 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T+ ++ LF+VP+  L    +     L+S          P   WL+ IP  G      W 
Sbjct: 72  MTLLLILLFVVPIAVLVSSVIDNSSALMSWGSRQENLSPPTLEWLTSIPLVGEKLFNSWQ 131

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    S               ++   A+  G     + +    M+I     Y  G ++
Sbjct: 132 ALLQSGGSGLFAKVQPYFGKTATWLVAQAAHVGR----FLMHCSLMLIFSALLYYKGEAV 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P    L
Sbjct: 188 AKAVRHFAIRLGRERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLL 247

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G  +      I+L   G+    T L +W  +    +D  +RP L+   
Sbjct: 248 TVLMFLCCLAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSCVV-GTIDNVIRPMLIRMG 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             LP L    G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 307 ADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQNLLSVN 361


>gi|157273433|gb|ABV27332.1| domain of unknown function protein [Candidatus Chloracidobacterium
           thermophilum]
          Length = 432

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 117/352 (33%), Gaps = 12/352 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-------EESSTFLA 63
               ++  +++   Y  +  F P+L +  + +   P+                   T   
Sbjct: 45  AAWGLLSGLLVHLSYIFQPVFVPLLISGALAYLIKPLADWLEHFGKQWVRPAGLRHTLSV 104

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++A    +    + L  +      ++     ++    Q G+ V + + +     +  +  
Sbjct: 105 LMAMAVAVLGLALGLFVVIPSLATQLTLAAKRLPAGYQRGMAVAQPILEGLQQRYPKQYE 164

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +    +   S                    +      ++++ +   +++  +D   
Sbjct: 165 QVVAAIHDRIADPSALIEPILAG---LSATFSNAIGVATSLINLLLIPFFVYYILKDAGR 221

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L  L      A    +   V   + S   G  I+     L+    + L G+PS ++
Sbjct: 222 LERRLLLLVPMRHRAIVDDMVSKVDLALSSFVRGQLIVCFLMSLLYTLGFSLLGIPSALS 281

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LG ++    ++P         ++  + +    ++     +     +   I    L PF++
Sbjct: 282 LGFLSGFGHLVPYIGTFLAGLLTCTIALSDAPSLVQLGLVIGVYVVVQSIESFYLTPFVL 341

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L       GL+ G    G+LG+ +    +A+  V+   S+   + + 
Sbjct: 342 GERLDLHPFLVIVGLLIGHHLFGILGVVLTVPCLAVGKVLVGISLEYYERSD 393


>gi|16079795|ref|NP_390619.1| permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310678|ref|ZP_03592525.1| hypothetical protein Bsubs1_14976 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315001|ref|ZP_03596806.1| hypothetical protein BsubsN3_14892 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319922|ref|ZP_03601216.1| hypothetical protein BsubsJ_14803 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324203|ref|ZP_03605497.1| hypothetical protein BsubsS_14947 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312267|ref|YP_004204554.1| putative permease [Bacillus subtilis BSn5]
 gi|8928489|sp|O34472|YRRI_BACSU RecName: Full=UPF0118 membrane protein yrrI
 gi|2635187|emb|CAB14683.1| putative permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|320018541|gb|ADV93527.1| putative permease [Bacillus subtilis BSn5]
          Length = 353

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 116/330 (35%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K  F P++ ++ I +   P+      K     T   ++  V         L    
Sbjct: 35  FWLVIKTIFIPLIISIFISYLLLPVTEWLHGK-GLPRTLSILVIYVLFFGGIGWALYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++++ +L   + +  +    +   + +           T         +I       
Sbjct: 94  PVLIVQLTDLSENIPMFAETYNGLLLHVHN----------HTDDWPDGMHHRIDKMIRQT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                     A       LDY L    +   +F+  +D   + + +  L    +      
Sbjct: 144 EAFFAGTIEGAISGIRNVLDYFLIAATIPFLVFYMVKDIELMKKTVWYLTPKSWRKRGSA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++ +  G++ G ++W+ G+P  + LG+I+ +  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLILGLISGVTNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ + +  ++     + +   I  F+    L PF+VG  +K+  +     L+ G   
Sbjct: 264 AVPALLIAMTISVKAVLVVVITVFILQFMEGNILSPFIVGRSLKMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G++G+ +     A++ V+    +    E+
Sbjct: 324 AGIVGMILAVPATAVLKVMMIHFLRMRTEH 353


>gi|238798726|ref|ZP_04642198.1| permease perM [Yersinia mollaretii ATCC 43969]
 gi|238717422|gb|EEQ09266.1| permease perM [Yersinia mollaretii ATCC 43969]
          Length = 362

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 116/350 (33%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 18  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRLW 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 77  AATIVLVVFGGITLLAVFVVAPTVWQQGNNLISDMPKMLNKFNAFAQTLPSRYPAL---- 132

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  L   + +I + + LFF  +D 
Sbjct: 133 ----VDAGIVDMMAENLRNKLSGMGESVVKISVASLIGLLTLAIYLILVPLMLFFLLKDK 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 189 EQMLNAVRRVLP-RNRGLAGQVWLEMNQQITNYIRGKVVEMVVVGIATYLVFFIMGMNYS 247

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 248 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGLGADFWTLFVAYLVVQGLDGNLLVPV 307

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +       +
Sbjct: 308 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEL 357


>gi|239814371|ref|YP_002943281.1| hypothetical protein Vapar_1364 [Variovorax paradoxus S110]
 gi|239800948|gb|ACS18015.1| protein of unknown function UPF0118 [Variovorax paradoxus S110]
          Length = 420

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 113/350 (32%), Gaps = 17/350 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  + +   + +L + +  F P++ +L++ +   P+      +        A
Sbjct: 60  PVDVRSASLVVLAVLASVFALRWGQAVFIPLMLSLLLTYALSPLVERLH-RLWLPRWIAA 118

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--------LSDIPG 115
            +  V +       L +  Y       +L   + +A Q      R         L  +  
Sbjct: 119 ALILVGLF----GGLGWTGYSLSGNATQLAESLPIAAQKLGQAMRRSRSANATPLESVQQ 174

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                E   +  S   + +      +       +  +     +  L+    +  +    +
Sbjct: 175 AAAQLEKAAEENSARVAARKGVARVVIERPSFNVRDYLLSGTVGLLEAIGQLTLVAFLTY 234

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F    G +  ++L  +             +   + + I    L   +I+   G+  G A+
Sbjct: 235 FALCSGDTFRRKLIKITGPSLQKKKVTVHVLDDITRNIERYLLVQILISALVGVTTGLAF 294

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFI 291
           W  GV S    G+I A+  +IP    +     +  +  L   ++     +         +
Sbjct: 295 WAIGVESAAVWGIIAAVTNLIPYVGSVIVMVAAGLVAFLQFNSLEMGILVGGVSLAIHTL 354

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           V   L P+L     ++  +  F G++      G+ GL +G  +  +I  I
Sbjct: 355 VGNLLMPWLTSRTSRMNPVAVFVGVIFWGWLWGVWGLLLGIPITMVIKSI 404


>gi|284040446|ref|YP_003390376.1| hypothetical protein Slin_5612 [Spirosoma linguale DSM 74]
 gi|283819739|gb|ADB41577.1| protein of unknown function UPF0118 [Spirosoma linguale DSM 74]
          Length = 383

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 113/336 (33%), Gaps = 16/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + II+  L+ L+G   P++ A++     +P+     +          ++A V
Sbjct: 15  KLVCVLLSLVIIVYGLHELQGLLIPLVFAILFSVLLFPLVQRLENWGVPR-----ILAIV 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  L  LF+   +++      +    + G      +          +   +   
Sbjct: 70  ICLLLALGALTALFWGVSVQISSFSEVIPQFVKRGSQYIDSIQTFADEQLNIDRKRQVAE 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L            +       +   +       ++  +++  FFF           
Sbjct: 130 IKKYL---------NQALAEGGTILTTTLLATTSILTNLFLVLLFAFFFLLYRDFFRSFF 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + +    +    +   + +V++    G+ ++ +  G ++     + GV   V  G   
Sbjct: 181 YKVFDDTRRSKIDDVMSGIYEVVKDYLAGLVLVILIIGTLMTVGLLILGVDYAVFFGFFG 240

Query: 249 AIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A + +IP            +  L+ + N   A  +         +    + P++VG  + 
Sbjct: 241 ACLVLIPYFGISMGSLLPAAYTLVTQDNPLKALGVIGVFLFVQTLEGNFITPYIVGSKVS 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      GL GL +   + A+I VI+
Sbjct: 301 INPLAAIVVLILWENVWGLPGLILALPMTAIIKVIF 336


>gi|89902219|ref|YP_524690.1| hypothetical protein Rfer_3452 [Rhodoferax ferrireducens T118]
 gi|89346956|gb|ABD71159.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 394

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 102/346 (29%), Gaps = 9/346 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  +     + +L +    F PVL  L+  +   P+               A
Sbjct: 34  PVDVRSVSLVVIATLASVFALRWAGAVFIPVLVGLLFSYALSPVVDWLQ-LLRIPRALSA 92

Query: 64  VIATVSVMCLFIVPLLFL---FYYGMLEMKELVSKVVLANQHGIPVPRW-LSDIPGGMWA 119
            +  + ++         L       +  +     K+  + +     P   L+ +      
Sbjct: 93  AVLILGILSGIGAGAYSLSDDASKLVELLPAAAQKLHDSVRSLPGKPNNTLTTVQRAAAQ 152

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E      +    +    +          I        M  L     I  + +  FF   
Sbjct: 153 IEQAADESTQAAPVSRSVQRVQIEKPKFNIKDHLWSGTMGLLGMLGQIGMVALITFFLMA 212

Query: 180 DGFSISQQLDSLGEH--LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            G    ++L  L            +    +   I+   L     +I  GL    ++   G
Sbjct: 213 SGDQFRRKLIKLTGPTLSKKKVTLQALNQIHDQIQRYMLVQLFTSILVGLATWLSFLAIG 272

Query: 238 VPSHVALGVITAIMAMIPGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +      GV   ++ +IP      I+  +  +  L  G +  A  +     +   I    
Sbjct: 273 LEHAAVWGVAAGVLDLIPYVGSVAIATGSALVSFLQFGTLEMALIVSGTSLVIHSIEAFL 332

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L P+L     K+  +  F G++      G+ GL +G  ++ +I  I
Sbjct: 333 LTPWLTSRTNKMNPVAIFVGVLAWGWLWGIWGLLLGVPILVVIKAI 378


>gi|283768904|ref|ZP_06341814.1| putative membrane protein [Bulleidia extructa W1219]
 gi|283104457|gb|EFC05831.1| putative membrane protein [Bulleidia extructa W1219]
          Length = 382

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 110/332 (33%), Gaps = 10/332 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK--------EESSTFLAVIATVSVMCLFIVPLLFLF 82
             P +   +  F   PI                     F ++++ +  + + +     L 
Sbjct: 48  LMPFVFGFVFAFLLNPIRKIVEYNVLKSVHWSARIKRVFASLVSILVFLLVLVAFFAILI 107

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                 ++   S      Q G      L      +W  +   + L           T   
Sbjct: 108 PQLYASVQTFSSAFPRYMQSGYRYLESLPLNLNEVW--KYLNEALQTFVQSLQRWLTLNS 165

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G+  +   A  F    LD+ + +I     L    +    + + + S+        + K
Sbjct: 166 AGGLSQLYYSAVSFARGILDFFIGVIIAFYILLDEEKLKSQLRKVVFSVIPFKRATSFFK 225

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + R++     +   G  + ++  G++      + G+P    + VI  +  MIP   P   
Sbjct: 226 VCRMIIDNFNNFIAGKALDSLIIGIICYVGCLILGIPYAPLVSVIVGVTNMIPVFGPFIG 285

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                 ++   +      L ++  +   +    + P ++G  + LP +   F ++ G   
Sbjct: 286 GIPLTIMVALIHPLRGLTLGIFIFVLQQVDGNIIGPRILGSAVGLPSIWVMFSIIAGGAL 345

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G++G+ IG  L ++I ++ +       E K+
Sbjct: 346 FGIVGMVIGVPLFSVIYILVRNKTNERLEEKK 377


>gi|121610898|ref|YP_998705.1| hypothetical protein Veis_3980 [Verminephrobacter eiseniae EF01-2]
 gi|121555538|gb|ABM59687.1| protein of unknown function UPF0118 [Verminephrobacter eiseniae
           EF01-2]
          Length = 352

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/336 (22%), Positives = 134/336 (39%), Gaps = 3/336 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +++ + +     L  F   V   +I+     P +   + +     T  A+      
Sbjct: 10  AFVLLLILVTIAFGAILWQFHGAVFWGVILAILFAPWHRRLLDRMPGRPTLAALCTLALC 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + I+PL  +      E   +  +V           + +       WA  L        
Sbjct: 70  LIVVILPLAAITVSLAQEATVIYERVYTGQIDFGLYLQQVIAALPA-WAVNLLDGLHLTS 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                   + +      F+   A   G   L++ +S   M+  LFF  RDG  ++ ++  
Sbjct: 129 VGQWQQRLSAVAVQASQFLATQALNIGQNTLEFIVSFGVMLYLLFFLLRDGPRLALRIGQ 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L P + + + R    VIR+T  G  ++A  +G + G  +W+ G+   V  GV+ A 
Sbjct: 189 ATP-LEPNHKQPLIRNFTTVIRATVKGNIVVAAAQGALGGLIFWVLGIQGPVLWGVLMAF 247

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++++P     + +  V+IY L  G I+    L  +G   + +VD  LRP LVG   K+P 
Sbjct: 248 LSLLPAVGAGLIWVPVAIYFLATGAIWQGVVLTAFGVGVIGLVDNILRPILVGKDTKMPD 307

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                  +GG+   GL+G  IGPV+ AL    W+  
Sbjct: 308 YIVLISTLGGMALFGLMGFVIGPVIAALFIASWELF 343


>gi|331701993|ref|YP_004398952.1| hypothetical protein Lbuc_1641 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329129336|gb|AEB73889.1| protein of unknown function UPF0118 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 369

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 106/324 (32%), Gaps = 7/324 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----STFLAVIATVSVMCL 73
           F+      F    F P+L A I+ +   PI +     K        T+   +  + ++ L
Sbjct: 32  FVFSPIAIFFSTVFIPILLAGILFYMLNPIVNLITKIKFGKHQITRTWATTLVFLLLLGL 91

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +         + ++  L +++  A   G  +   L           L     +   + 
Sbjct: 92  VALAATVFIPKILNQLITLANQIPDAASQGQKLVDKLFKDMNSQQM--LKKIDFTTLTNK 149

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +         + +            +  +  + + + LF+  +DG+ ++  +     
Sbjct: 150 LSANVNKYAETIFNGVTNGLGGIISAAANAVIIAVTVPVVLFYMLKDGYRLAPTIKKFLP 209

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   +   I     G  I  +  G      Y + G P  + LGVI  I  +
Sbjct: 210 ERHREQTMDLLGKMSHTISKYISGQMIECLFVGTFTAIGYVIIGTPYALLLGVIAGICNI 269

Query: 254 IPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP   P    A ++ +    G +++     +   I   I    + P ++G  +++  L  
Sbjct: 270 IPYLGPYIGIAPALIVSFSHGGLWSVVYNIIVVLIVQQIDGNLVYPNVIGKSLEIHPLTI 329

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMA 336
              L+      GL+G+ +   L A
Sbjct: 330 IIILLAAGNIAGLMGMILAVPLYA 353


>gi|111657945|ref|ZP_01408653.1| hypothetical protein SpneT_02000864 [Streptococcus pneumoniae
           TIGR4]
          Length = 343

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 107/323 (33%), Gaps = 6/323 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L      + + PI +      + +     +I   +++   ++ +
Sbjct: 4   LINPFVSVLNTIMIPFLLGGFFYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 63

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 64  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 117

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 118 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 177

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 178 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 237

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 238 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 297

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                G++G+ +     +++  I
Sbjct: 298 SSNIYGVVGMIVAVPTYSILKEI 320


>gi|312898878|ref|ZP_07758266.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
 gi|310620040|gb|EFQ03612.1| conserved hypothetical protein [Megasphaera micronuciformis F0359]
          Length = 373

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 121/337 (35%), Gaps = 6/337 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE--ESSTFLAVIATVS 69
           +R ++M + +     +K  + PV+ +LII F   P+                   I+ + 
Sbjct: 25  LRVVLMILGVCLFLAVKEIYWPVIVSLIITFILTPLRDGIQKGLVRLFRRQVPIDISILL 84

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  +  +       +K L+ ++ L   +   +     ++   + + +        
Sbjct: 85  SFVVLIAVIAVMTNSI---LKPLIGQLNLLANNFSTIVSQTYELVVQLESDQAPIYIPDQ 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++   +   +   GID I               +    +    F+F +DG  +     
Sbjct: 142 VKAIVNEAFIKVSNYGIDGISNLVKSVF-AIAGTVVEFFVVPFITFYFLKDGERMMNAFV 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    +  + +     +  V+     G  +++     +  +  W+ GVP  + + ++ A
Sbjct: 201 NLYPSDYRLHLRSYFEELSLVLSRYIRGQLLMSCIIACLTFTGMWIMGVPYPLVIALLAA 260

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I   IP   PI     +I L    +   A  + ++ A+   I    + P ++G  I +  
Sbjct: 261 ITEWIPVIGPIVGAIPAILLGATISPSLALKVLIFYAVVQQIDGHLIMPQVMGKVISIHP 320

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +     L+ G    G+ G+ +   L+A++    +   
Sbjct: 321 VVIVIALLIGGTLFGVAGMILTVPLVAVLQTTARHLW 357


>gi|217977145|ref|YP_002361292.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
 gi|217502521|gb|ACK49930.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
          Length = 382

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 97/317 (30%), Gaps = 9/317 (2%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P+      +   +     ++     + +  + L+ +      ++   +  +        
Sbjct: 42  NPVADRLE-RLGLNRLGATLLIMTGFILILALILVLVMPAFWRQLLSFLQALPDYAVRLE 100

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET-----FLKTNGIDFIPRFASRFGMI 159
            +               +  K     ++   L  +                +     G  
Sbjct: 101 DLASDFGARFAQDHGGSILQKLGLGKETSADLRSSTSDLVNQAAQWAGTFVKSIWSSGAA 160

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +     ++   +  F+   D   +   +DSL      A  ++++R +   +     G +
Sbjct: 161 LISLVSLLVLTPVVAFYMLLDWDKMIATVDSLVPLRHRATVRELAREIDAALAGFLRGQS 220

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF--- 276
           ++ +  GL  G    L G+   + +G+    ++ IP    ++   +S  + I        
Sbjct: 221 LVCLFLGLWYGVGLSLIGLNFGLLIGITAGFLSFIPYVGSLTALVLSAVIAIVQGWPEWR 280

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                        F+    L P LVGG + L  +   F L+      G  GL I     A
Sbjct: 281 LMIMALGVVVSGQFLEGNILSPKLVGGSVGLHPVWLIFALLAFGSLFGFTGLIIAVPCAA 340

Query: 337 LIAVIWKESIMAIKENK 353
              VI + ++   + +K
Sbjct: 341 AFGVILRFAVRRYRSSK 357


>gi|307324926|ref|ZP_07604131.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306889424|gb|EFN20405.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 371

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 104/339 (30%), Gaps = 14/339 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L  +     P++  L++   +WP+               A   TV  + +    +  +
Sbjct: 36  WGLGQMWSVVWPLVVGLLLTTLTWPLARVL-RGLGWPPALAASAVTVLFLLVVTGIVALI 94

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 +  EL  +V    Q                WAS           +    +    
Sbjct: 95  AVPVASQSGELTDRVTEGIQQVRE------------WASGPPLNISDAQITKATDTAADR 142

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +    +           +D  ++ +  +  +FFF +DG      L             
Sbjct: 143 LQSSAGSLVTTIVTGVSTVIDGVVTAVLALFLMFFFLKDGPRFLPWLTRQLPGRLATDIP 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++      + +      ++ + + + +G   W  GVP  + L V+T I A +P    + 
Sbjct: 203 VVAARGWDTLGAFVRSQALVGLLDAVFIGLGLWALGVPLVLPLAVLTFICAFVPIVGALF 262

Query: 262 -FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 +  L+     +A        +   +     +P +    + L        +  G 
Sbjct: 263 AGGVAVLIALVSNGSTDALIALAIIVVVQQLEGNVFQPMIQSRGLGLHAAVILLAVTLGS 322

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              G++G  +   + ALIAV+W      +    E++ +N
Sbjct: 323 SLAGIVGSLLAVPVAALIAVVWNYLREQLSHPPEELENN 361


>gi|94971052|ref|YP_593100.1| hypothetical protein Acid345_4026 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553102|gb|ABF43026.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 360

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/331 (19%), Positives = 134/331 (40%), Gaps = 5/331 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  F  PV  A++I     P+Y   + + +      + +  +  + L  +P  FL    
Sbjct: 25  IVFPFIKPVAFAIVIAVVFNPLYQRLLKRTK-RPGTASFLTIIVFITLLAIPASFLVVTA 83

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +  ++  +V         V   +  +           ++L  P S             
Sbjct: 84  TRQAMDVGHRVSETTTAHGGVAPTIERV--SAKPLATLGRYLRIPPSELKQRIEDKLNVW 141

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +            +    +I +FF +RDG  + + +D +   +     ++I  
Sbjct: 142 AGRMMSQSGALLANLFSLLANSFIALITVFFLFRDGERVIEGMDRVLP-ITKEQLQRILN 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
            +   I +   GM  +   +G +         V S + LG++ A+ ++IP     + +  
Sbjct: 201 GISNSIVANVYGMAAVGAAQGFLTALGLAFCSVSSSILLGLVAAMCSLIPIVGTGLVWVP 260

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + YL+I G++     L  WGA  +  +D  +RP ++ G ++   L   F L+GGV+  G
Sbjct: 261 AAGYLMITGHVGKGIFLLAWGAFVVSSIDNVIRPMVIQGRVQAHPLLILFALLGGVQAFG 320

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+GLF GP+L+++I V+ +  +  I+E   K
Sbjct: 321 LIGLFAGPILLSVITVLLQIMLEEIREKDAK 351


>gi|238763603|ref|ZP_04624564.1| permease perM [Yersinia kristensenii ATCC 33638]
 gi|238698235|gb|EEP90991.1| permease perM [Yersinia kristensenii ATCC 33638]
          Length = 354

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 115/350 (32%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 69  AASIVLVVFGGIALLAVFVVAPTVWQQGNNLMSDMPKMLNKFNAFAQTLPSRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVLEMVVVGIATYLVFFVLGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLSVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|223984123|ref|ZP_03634275.1| hypothetical protein HOLDEFILI_01567 [Holdemania filiformis DSM
           12042]
 gi|223963917|gb|EEF68277.1| hypothetical protein HOLDEFILI_01567 [Holdemania filiformis DSM
           12042]
          Length = 382

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 124/346 (35%), Gaps = 11/346 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCL 73
           + L  + G   P +    + F   P+ +    K                   A V +  +
Sbjct: 38  LFLGNIIGILLPFILGFSLAFLLAPVTARVEKKWLAKSKMKPSAKRKVGVAAAIVFLFVV 97

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  +  L    +  +  L +++         +   +++   G+     W + +      
Sbjct: 98  LISFMAILIPQLLESVMTLSTQLSDYLGKANTLLNEITE---GLGFKTGWLEMVFSSSEA 154

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + S   +  + +  I  ++  F     ++ +++I  +  L    R      +   +L  
Sbjct: 155 LLESMLGMAKDYVPKILNYSWSFVRQTFNFFIAVIIAVYILLEKERFTEQFKKLAYALLP 214

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++SR+  ++  S  +G  I ++  G++      +  +P  V +  I  +  M
Sbjct: 215 KPKVEALIQLSRLTSRMFNSFIIGKMIDSLIIGVICFIGMLIMRLPFAVLISFIVGLTNM 274

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P       I++L   +   +    ++  +        L P ++G  + LP L   
Sbjct: 275 IPVFGPFIGAVPGIFILFIVDPIYSLIFAVFVLLLQQFDGNILGPMILGDQLGLPSLWVM 334

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           F ++ G    G+LG+F+G  + A++ V+ +  +    + K   S +
Sbjct: 335 FSIIVGGGMFGILGMFLGVPVFAVLYVVVRGFVSGRLKEKNIRSDD 380


>gi|108801082|ref|YP_641279.1| hypothetical protein Mmcs_4118 [Mycobacterium sp. MCS]
 gi|119870223|ref|YP_940175.1| hypothetical protein Mkms_4193 [Mycobacterium sp. KMS]
 gi|108771501|gb|ABG10223.1| protein of unknown function UPF0118 [Mycobacterium sp. MCS]
 gi|119696312|gb|ABL93385.1| protein of unknown function UPF0118 [Mycobacterium sp. KMS]
          Length = 400

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 119/347 (34%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +  +  + +  +    YFL+GFF  ++ A +  +   P+Y     +    +   A +
Sbjct: 15  TTQKRALSVVTLLAVAFGAYFLRGFFILIVVAAVGAYLFTPLYERLRRRFG--TGLSATL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             ++ +   I+P   + +  ++++ ++V+ V        +      +         ++  
Sbjct: 73  TLLAAVLTVIIPATLVVFLAIVQITQMVTTVNQWMATTDVSTLGDRAMKFANDLIEKVPF 132

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                           +     +++           L    + +  +        +   I
Sbjct: 133 LDFRLTPDTLRDGVVTVSQRVGEWLLGVLQGAVGGVLGALAATVIFLYVFISLLVNRDKI 192

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L   L              +++ T  G  +IA+ +G+    + ++AG       
Sbjct: 193 RTLIRRLNP-LGEDITDLYLAKTGAMVKGTVKGQFVIALCQGVAGAISIYVAGFHEGFFF 251

Query: 245 GVITA-IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I    +++IP G+ I      I + + GN+     +  +  + +  +D  LRP LV  
Sbjct: 252 FAIVLSALSVIPLGSGILSIPFGIGMALFGNVIGGVFVVAFHLLVVTNIDNVLRPMLVPK 311

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +L        +  G+   G  G+ +GPVLM +I       +   K
Sbjct: 312 AARLDPALMLLAVFSGIAMFGFWGIVLGPVLMIIIVTTISVYLAVYK 358


>gi|59712528|ref|YP_205304.1| inner membrane protein [Vibrio fischeri ES114]
 gi|197336366|ref|YP_002156749.1| transporter [Vibrio fischeri MJ11]
 gi|59480629|gb|AAW86416.1| predicted inner membrane protein [Vibrio fischeri ES114]
 gi|197317856|gb|ACH67303.1| transporter [Vibrio fischeri MJ11]
          Length = 354

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 113/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+ +  +++YF     AP+L A+++ +      +    +       
Sbjct: 10  KRRFSDPHAVSLAAILIVGFITIYFFGHLIAPLLVAIVLAYLLEWPVAKLT-RIGLPRVL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  + L ++ +  L      ++  L++ V             L +        +
Sbjct: 69  SVMLVIILFISLMLLAVFGLVPTIWTQVGNLINDVPSMFNGLNSFLSSLPERYPEFIQPQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L   +   +     +    +  +   A           + +I + + +FF  +D 
Sbjct: 129 SIETLLETIRVKVLGMGESIVKGSLSSLVSLA--------ALGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   + +L          K+   + + I +   G  +  +  G V    +++  +   
Sbjct: 181 DEMVGTMSNLLP-KNRRLATKVWLEMNEQISNYIRGKVVEILIVGTVSYLTFFIMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP     + T       L   G   +   L L  AI   +    L P 
Sbjct: 240 LLLAVMVGFSVLIPYIGAAAVTVPIAIVALFQWGLTPDFYWLLLAYAIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L  L+  +WK       E  
Sbjct: 300 LFSEAVNLHPVAIIVSVLVFGGLWGFWGVFFAIPLATLVKAVWKALPATEIEAN 353


>gi|119469488|ref|ZP_01612392.1| predicted inner membrane protein [Alteromonadales bacterium TW-7]
 gi|119447023|gb|EAW28293.1| predicted inner membrane protein [Alteromonadales bacterium TW-7]
          Length = 359

 Score =  128 bits (322), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 112/358 (31%), Gaps = 12/358 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P  +    ++ + +  LYF      PVL AL+I +           +        
Sbjct: 11  RKFSDPHSVTLLFLLLVSVALLYFFGSLIVPVLVALVIAYLLDWPVVHLE-RLGLRRFTA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            VI  +    + +  +L +      +   LV +     + G      L +    +  ++ 
Sbjct: 70  TVIVMLIFTGIMLTLILVIGPVLWKQTSNLVQETPHMLEQGKSYLVALPEQYPSLINADQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  ++  I             +  F+       + + + ++ + + +FF  +D  
Sbjct: 130 VQGIVATVEAKVIE--------LGQVVLSFSLTSLKDVVAWLIYLVLVPLLVFFMLKDKL 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L          ++   + + I +   G     +  G V   A+    +    
Sbjct: 182 ELTGSVAKLIPQQ-RRLILQVWNEMNQQIMNYIRGKVFEILIVGGVSFIAFTFLDLRYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+     +IP       T     + L   G       + +   I   +    L P L
Sbjct: 241 LLGVLVGFSVLIPFVGAALVTIPVAAVALFQFGLETQFWTILIIYGIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               + L  +     ++      G  G+F    L +L+  +        +E   K++ 
Sbjct: 301 FSEAVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALITAWSSTQEELNNKLTE 358


>gi|257870155|ref|ZP_05649808.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257804319|gb|EEV33141.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 391

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 104/337 (30%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       +     P L  LI+ +   P+     +K +           + ++ + +
Sbjct: 35  ISFLFDPFFVIISTLIPPFLFGLILYYLFNPLVDRLETK-KIPRIVSIGGIYLLILLVIV 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +    L+     +  +L+++                         +  T  L    +  +
Sbjct: 94  LAGFQLYPIIQKQTTDLINQFPDLIADFERNADSFLANTPFGAQIDQITDTLQKVANNIM 153

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G   +    S    +F+      I       F  R+       L S+    
Sbjct: 154 DFIGDYWQTGAAGLSSIFSTISTLFIALFTGPIIAF----FLLRNPNKFYYSLLSIVPPR 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +  I +I    + +   G  I +   G +    + L G+     L +   I+ +IP
Sbjct: 210 FRKDFNTIVKIADLQVGAFLKGQIISSFILGGIYWVIFLLIGLEYASILAIAAGILCIIP 269

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++++  + +        +       +    + P ++G  +++  +     
Sbjct: 270 YIGPFIVFFPALFIAAQDSTGMLIKFLIAWFAVQLLHGDLVVPRVMGDRLQIHPITILVV 329

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ V+        K+ 
Sbjct: 330 LLVMGDLMGIVGVIFGIPIYCLLKVLVVYGFRKFKQR 366


>gi|253989272|ref|YP_003040628.1| permease perm [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253780722|emb|CAQ83884.1| putative permease perm [Photorhabdus asymbiotica]
          Length = 359

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 117/350 (33%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I  ++I+ +    +YFL G  AP+L A+++ +      S    K   S T 
Sbjct: 10  RRRFTDPQVIALFIILVVGFCIIYFLHGILAPLLVAIVLAYLLEWPTSMLE-KLGCSRTV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +    +  + +L +      +   L+S +           + L      +    
Sbjct: 69  AVCIVLIIFSGISALVILIVAPTAWQQGLNLLSDIPNMLNRFNEYAQTLPTRYPVL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + +  FF  +D 
Sbjct: 125 ----VDAGIIDMMAENLRSKISTAGESVVKFSVASLIGLLTLAIYLILVPLMAFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + Q L  +          ++ R + + I +   G     +  G+   + +   G+   
Sbjct: 181 NQMLQALQRVLP-RNRILAGQVWREMNQQITNYIRGKVTEMVIVGICTYAVFAFLGLEYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   I   L   G   +   L +   I   +    L P 
Sbjct: 240 LLLSVLVGLSVLIPYVGALIVTIPVILVALFQWGVGTDFWTLIIAYLIVQGLDGNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  LI  +       +
Sbjct: 300 LFSEAVNLHPLVIILSVITFGGLWGFWGIFFAIPLATLIKAVIHAWPEEM 349


>gi|116872311|ref|YP_849092.1| hypothetical protein lwe0893 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741189|emb|CAK20311.1| putative membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 378

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 120/345 (34%), Gaps = 14/345 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    ++FI+L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAVLFILLQMKYIFSPIGIIISTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q        LS      
Sbjct: 72  PRLLSVILIFIAFIALIVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLESLSHN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L +  +    +   +S   + +   D +             + + ++ +   +F+ 
Sbjct: 128 --SALQSVDIKAELAKLNISLPKIMSVVFDGVASSFGAIFSFISGFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
            P  +  G I     +IP   P    A ++ + +  +   A  + +   I   I    L 
Sbjct: 246 QPYALLFGFIAGATNIIPYLGPFLGAAPAVIVALFTSPLQALLVIVVVTIVQQIDSNLLS 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 306 PYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 350


>gi|225420000|ref|ZP_03762303.1| hypothetical protein CLOSTASPAR_06341 [Clostridium asparagiforme
           DSM 15981]
 gi|225041351|gb|EEG51597.1| hypothetical protein CLOSTASPAR_06341 [Clostridium asparagiforme
           DSM 15981]
          Length = 413

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 108/360 (30%), Gaps = 17/360 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------ 58
           +   +   ++  +   L     P++   ++ +   P+Y+       E+            
Sbjct: 27  VFFLLKFQMVAAAAGKLVDVLMPIIYGAVLAYLMLPVYNKTRRYVTENLSVKVKNEKMVQ 86

Query: 59  ---STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDI 113
                   +++ + ++ + +     L       +  L         +     +     + 
Sbjct: 87  SAARGLGTLVSLLLLIAIVVGLCWMLLPQIYTSILGLQESFSENINNLSIWLQKQLADNE 146

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                   ++ +     ++    +     +  I+ +         +  +  + +I M+  
Sbjct: 147 ALEQMVVPVYEQVTDKLETWLYDTLVPNMSMVINILSTGLLGVVTVLKNSLIGLIVMVYF 206

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L           + + SL          +  R    V      G  + ++  G++     
Sbjct: 207 LNIKDTLSAQSKKIVYSLFPLKQANRIIEEVRFTHSVFGGFITGKLLDSLIIGVICFFCM 266

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L  +P  + + VI  +  +IP   P      S +L++  +        L+  +      
Sbjct: 267 RLLRMPYVLLVSVIIGVTNVIPFFGPFIGAIPSAFLILLVSPMKCLYFLLFVLVLQQFDG 326

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P ++G    LP     F ++     +G +G+ I     A+   +  E +    E K
Sbjct: 327 NILGPKILGESTGLPSFWVLFSILLFGGLLGFVGMVIAVPTFAVFYHLASEYVNRCLEKK 386


>gi|238791674|ref|ZP_04635311.1| hypothetical protein yinte0001_13870 [Yersinia intermedia ATCC
           29909]
 gi|238728778|gb|EEQ20295.1| hypothetical protein yinte0001_13870 [Yersinia intermedia ATCC
           29909]
          Length = 367

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/357 (18%), Positives = 130/357 (36%), Gaps = 4/357 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L         IM +I+ S + ++ F      A ++   +WP+              
Sbjct: 7   RRFDLPKLMFGVIFIMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKLLWGKRWL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++ T+ ++ LF++P+  L    +     L+      +   +P   WL  IP       
Sbjct: 67  AVIVMTLLLILLFVIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQSIPMVGNKLY 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L         +        I     +          + + +  M++     Y  G
Sbjct: 127 SSWHTLVAGGG---NAMIAKVQPYIGAAATWLVAQAAHVGYFLIHLALMVLFSVLLYFHG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+   
Sbjct: 184 EQVGLGIRHFAVRAADKRGDGVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQYA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               V+  I  +   G  +      I+L   G+    T L +W  I    +D  LRP+L+
Sbjct: 244 TLFTVLMFICCVAQLGPLLILVPAIIWLYWTGDTTWGTALLIWSCIV-GTMDNVLRPYLI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I  
Sbjct: 303 RMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESIQE 359


>gi|148379130|ref|YP_001253671.1| putative transporter [Clostridium botulinum A str. ATCC 3502]
 gi|168178564|ref|ZP_02613228.1| putative transporter [Clostridium botulinum NCTC 2916]
 gi|226948415|ref|YP_002803506.1| putative transporter [Clostridium botulinum A2 str. Kyoto]
 gi|148288614|emb|CAL82695.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|182670768|gb|EDT82742.1| putative transporter [Clostridium botulinum NCTC 2916]
 gi|226844553|gb|ACO87219.1| putative transporter [Clostridium botulinum A2 str. Kyoto]
 gi|322805470|emb|CBZ03034.1| permease [Clostridium botulinum H04402 065]
          Length = 367

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/330 (13%), Positives = 108/330 (32%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +  +    +P + A II +   P+   F  + +       +I  V  + + ++ L 
Sbjct: 36  VFSGIGKVFKILSPFIIAFIIAYILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLS 95

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + ++   +      G  +   L      +  +   +          I    
Sbjct: 96  MIVPKVFQSIMDIFQNIPYYTNKGYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIA 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              + G++ I      F    ++    +I  I  L    +  ++  + +  +    +   
Sbjct: 156 SFTSVGLNTILSQTISFTTFMVNLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEK 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  R V  +I+       + ++  GL+      +   P  + + +I  +  MIP   P
Sbjct: 216 IIEFFRTVNSMIKLYIGIKALDSLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGP 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ + +      A  + ++  +        L P LVG  + L       G+  G
Sbjct: 276 FIGMIPAVVINLFYVPVKALWVLIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               G+ G+ +    MA+I +  K+     
Sbjct: 336 GSLFGVWGMLLASPAMAVIKIYTKKLAEKY 365


>gi|315635043|ref|ZP_07890324.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
 gi|315476305|gb|EFU67056.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
          Length = 352

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 105/346 (30%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +PQ +    I+    VS+YF     AP+L A+++ +           K +      
Sbjct: 11  RRFTDPQAMGLAAILLFGFVSIYFFSDLIAPLLVAIVLAYLLEWPVRLLNEKLKCPRLVA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++   S + L  V +L L      ++  L+S +             L +    +  ++ 
Sbjct: 71  AMLVLGSFISLVFVVVLVLIPNLWAQLANLLSDLPHMFNRFNEWFLSLPERYPELIDAQT 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   +   +          +  I    +          +    + + +FF  +D  
Sbjct: 131 VESIFGTVKEKILSLGESALKLSLASIMNLVT--------LGIYAFLVPLMVFFLLKDKR 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +             K+   + + I +   G  +  +    V  + +   G+   +
Sbjct: 183 QLIDGVSRFLP-RNRTLASKVWVEMQQQIANYIRGKLLEILVVTAVTYAIFLTFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V      ++P    +  T   + +     G+      + +   +   +    L PFL
Sbjct: 242 LLAVAVGFSVLVPYIGAVLVTIPVVLVAIFQFGDTHTFWYILIAFVVSQLLDGNLLVPFL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  L     ++      G  G+F    L  L+  +     
Sbjct: 302 FSEVVNLHPLIIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWP 347


>gi|119505643|ref|ZP_01627714.1| permease, putative [marine gamma proteobacterium HTCC2080]
 gi|119458586|gb|EAW39690.1| permease, putative [marine gamma proteobacterium HTCC2080]
          Length = 356

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 119/345 (34%), Gaps = 8/345 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
               I+  I V ++ L    AP +    I +   PI  +  ++     T    +  + ++
Sbjct: 12  FVVGIIVAITVFIWALHPILAPFIVGAFIAYLGDPIVDALEAR-GYGRTSGVALVFLVLV 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + LL      + ++ + + K+    +               +    L         
Sbjct: 71  LVTTLILLVGIPLLIDQLDQAIKKLPSLYRWVSTSLLPSIHERISVSPVALPPIDWEAEL 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           + +  S   L    +  + R         +    ++  + +  F+  RD   +   +  L
Sbjct: 131 AARWQSVGKLVATSVASLTRSGFGV----IAAVFNMTLIPVVAFYLMRDWDRMMAAILDL 186

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     ++      V+ +   G  ++ + +  +  +  W  G+   + LG +  + 
Sbjct: 187 VPITWQQDLSRMVAEANDVLGAFIRGQFLVMLAQAFLYSAGLWFVGLDFALILGTVAGLA 246

Query: 252 AMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++IP    +     S+ +      G++     + L  A+   +    L P L+G  I L 
Sbjct: 247 SIIPYAGAVLGVGSSLVVAWFQTGGDLSFIAWVGLVFAVGQTLESMFLTPVLIGDRIGLH 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +   F L+ G +  G  G+ +   + A+I V  + ++   +  +
Sbjct: 307 PVVVIFALLAGGQLAGFTGVLLALPVAAVILVFCRHAVGYYRSTE 351


>gi|77459939|ref|YP_349446.1| hypothetical protein Pfl01_3717 [Pseudomonas fluorescens Pf0-1]
 gi|77383942|gb|ABA75455.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 353

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/338 (21%), Positives = 143/338 (42%), Gaps = 3/338 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++  + +  ++ L  F+  V  A+I+G    P+      K        ++      +
Sbjct: 11  LTVLLFLVTVAFIWILLPFYGAVFWAVILGILFAPMQRQLQLKFGWQRNLTSLCTLSICL 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+P++ L    + E   L   +                     +   L    +    
Sbjct: 71  VIAILPVIVLSVLLVQEGATLYDNIESGKLDIGAYLAQFKHSLPPYFQHLLDRFGMGELN 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L+          G   +   A  FG    ++ +S   M+  LFFF RDG  +++++ + 
Sbjct: 131 ALREKIVKAAMQ-GSQVLASQAFSFGQGTFEFVVSFFIMLYLLFFFLRDGAELARKVRTA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L   + +++     +V+R+T  G  ++AI +G + G+ +W   +PS +   V+ A +
Sbjct: 190 IP-LEEHHKRRLQLKFNRVVRATVKGNLLVAITQGALGGAIFWFLDIPSALLWAVLMAFL 248

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P     I +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   ++P  
Sbjct: 249 SLLPAVGAGIVWVPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNLLRPILVGKDTRMPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                 +GG+   GL G  IGP++ AL    W   I +
Sbjct: 309 MILISTLGGLAVFGLNGFVIGPLIAALFMSSWALFIES 346


>gi|238752065|ref|ZP_04613549.1| permease perM [Yersinia rohdei ATCC 43380]
 gi|238709765|gb|EEQ01999.1| permease perM [Yersinia rohdei ATCC 43380]
          Length = 354

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 117/355 (32%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 69  AASIVLVVFGSIALLAVFVVAPTVWQQGNNLISDMPKMLNKFNGFAQTLPSRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVVEMVVVGIATYVVFFVMGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     ++      G  G+F    L  L+  +          + E
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEFIPDAE 354


>gi|91775579|ref|YP_545335.1| hypothetical protein Mfla_1226 [Methylobacillus flagellatus KT]
 gi|91709566|gb|ABE49494.1| protein of unknown function UPF0118 [Methylobacillus flagellatus
           KT]
          Length = 352

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 139/335 (41%), Gaps = 3/335 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
             ++++ +    +  L  F+  V   +I+     P+Y   +          A+    + +
Sbjct: 11  FVFLLLLVSAGLIIILLPFYGAVFWGVILSILFTPLYRRLLVTTRNRKNLAALGTLSACI 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + IVP++ +    + E   L  K+     +     + + D         L    LS  Q
Sbjct: 71  IIVIVPVIIIASSLVHEGTMLFQKIKTGQINPALYTQQILDATPAPVHRILERVGLSDVQ 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S +    + L   G   +   A   G     + +    M+  +FF  RDG S+S ++   
Sbjct: 131 SFQEKL-SQLAMEGSQLLATKALSIGQNTFQFVVGFAVMLYLMFFLLRDGSSLSIRVKQA 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L   + + +      VIR+T  G  ++AI +G + G  +W+ G+ + +   VI A +
Sbjct: 190 IP-LSAEHKRHLFNKFTTVIRATVKGNILVAITQGALGGLIFWILGIQAALLWAVIMAFL 248

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +++P     + +  V++Y L  G I+    L  +G   + +VD  LRP LVG   KLP  
Sbjct: 249 SLLPAVGASLIWAPVAVYFLATGAIWQGVILIAFGVFVIGLVDNILRPILVGKDTKLPDY 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                 +GG+   GL G  IGP++ AL   +W   
Sbjct: 309 VVLISTLGGMAVFGLNGFVIGPLIAALFITMWDIF 343


>gi|300715132|ref|YP_003739935.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
 gi|299060968|emb|CAX58075.1| conserved uncharacterized protein [Erwinia billingiae Eb661]
          Length = 369

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 129/336 (38%), Gaps = 3/336 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G    ++  + +  L  L  +++ VL A I+     P+ +       + +        V
Sbjct: 8   KGFFILILFIVTVAFLDVLGPYYSSVLWAAILAVIFHPMKTKLRQMMGDRNGLATFATLV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +   PL  L     +E   + +K+   N     +   +     G WA    T+H  
Sbjct: 68  VICLIVFTPLAILVSSMAIEFNVVYTKLQSNNMQLPTIMADVMQHLPG-WARSFLTEHQL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +      + +   G  ++       G     + +    M+  LFF  +DG  +   +
Sbjct: 127 DTAAQIQQKLSQVAMQGGQYLAGSVFLIGKSTFGFTVGFGIMLYLLFFLLKDGAYLVNLI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       +      V R+T  G  ++A+ +G +   A+W+ G+   +  G + 
Sbjct: 187 LEALP-LSSYVKHHLFMKFAAVSRATVKGTVVVAVVQGALGALAFWITGIDGILLWGALI 245

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A +++IP     I +   +I+    G ++    +  +  + + +VD  LRP LVG   K+
Sbjct: 246 AFLSLIPAVGSAIVWVPAAIFFFASGVLWKGLFIVGFFVVVIGLVDNILRPLLVGKDTKM 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P        +GG+   G+ G  IGP++ A+    W 
Sbjct: 306 PDYLILIATLGGMEIYGINGFVIGPLIAAMFIACWN 341


>gi|163801373|ref|ZP_02195272.1| nicotinate phosphoribosyltransferase [Vibrio sp. AND4]
 gi|159174862|gb|EDP59662.1| nicotinate phosphoribosyltransferase [Vibrio sp. AND4]
          Length = 386

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 133/350 (38%), Gaps = 5/350 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +++ +++ +   +K F  PV+   II     PI               A  
Sbjct: 17  MVESAIRIGLVIILLMFTYDIIKPFILPVIWGAIIAVALMPICKKLEKVYGGKRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + PL+ +    +      +  +   +         +++ P           
Sbjct: 77  IAILGIALLVTPLVMVSGSIVDGATHALEVLQNGDIKIPGPKPSVAEWPVVGDKLYEVWT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      I +      +G+  +           L   LS+         F     S++
Sbjct: 137 LFSTNLEKAIQTFMPQIKSGLTSLLGMVGGALGSLLLSILSLAIAAG----FMTYSESLA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L 
Sbjct: 193 SGLSTIAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+ +    A ++   V  Y+ +  +   AT   +W  +   + +   +P L+G  +
Sbjct: 253 LVLMILCIAQLPALLAVLPVIGYMYMTKDTSTATMFTVW-VVVAALSENLFKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +P      G +GG+   G++GLF+G V++A+   ++   I   K  +++
Sbjct: 312 SVPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWINIEKAQQQE 361


>gi|320335654|ref|YP_004172365.1| hypothetical protein Deima_3071 [Deinococcus maricopensis DSM
           21211]
 gi|319756943|gb|ADV68700.1| protein of unknown function UPF0118 [Deinococcus maricopensis DSM
           21211]
          Length = 367

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 115/348 (33%), Gaps = 5/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++++        L       L   I+ + + P+      ++   +    VI  +
Sbjct: 25  RALVFLLMLYAASRVFGSLAHVIVLGLIGYIVAYLTNPLLIWLQRRRLPRAMG--VIIVI 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+  F+     L    + ++ +L+ K+    ++       L+     +       + + 
Sbjct: 83  LVLLGFLALCSTLLVTVIGQLSDLIQKLPELARNTTTFIDRLAQQHAFLV---PLREQIE 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     +   + +    +             F +     + ++I   +   D   I   L
Sbjct: 140 NFTGGGLSQISSVVVPYLQKYQSSLLTGAFSFANTLAEGLAVLIIAIYMMLDFDKIGLTL 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +  +   +SR V   +     G  +IA   G+++     + GVPS  ALG + 
Sbjct: 200 LRAFPRSWQPFVLNLSRDVEHAVGGYLRGQILIASCVGIIVAVGLAICGVPSAPALGFLA 259

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               ++P    I     ++ L           + +       I    L P ++G    L 
Sbjct: 260 GAFNIVPYLGVIIAITPALLLAAAAGWLKVVLVIVVFVFANQIEAHLLSPMILGKSTNLH 319

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +     ++ GV   G++G  +   L AL  ++ +E     K   E  
Sbjct: 320 PVTVILAILAGVTLYGIVGALVAVPLAALGKLLIEEYYYPSKVYTEGP 367


>gi|261822011|ref|YP_003260117.1| inner membrane protein [Pectobacterium wasabiae WPP163]
 gi|261606024|gb|ACX88510.1| protein of unknown function UPF0118 [Pectobacterium wasabiae
           WPP163]
          Length = 369

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 138/355 (38%), Gaps = 6/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+   F +      +   ++
Sbjct: 12  LARNLFSLVFITIMIIACFWVVQPFILGFAWACMVVIATWPLLIKFQALLWGRRSLAVLV 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T  ++ LFIVP+  L    +     L+S          P   WL+ IP  G      W 
Sbjct: 72  MTFLLILLFIVPIAVLISSVVDNSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQ 131

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    S               ++   A+  G     + +    M+I     Y  G ++
Sbjct: 132 ALLQSGGSGLFAKVQPYFGKTATWLVAQAAHIGR----FLMHCTLMLIFSALLYYKGEAV 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P    L
Sbjct: 188 AKAVRHFAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLL 247

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G  +      I+L   G+    T L +W  +    +D  +RP L+   
Sbjct: 248 TVLMFLCCLAQLGPLLVLIPAIIWLYWTGDNTWGTILLVWSCVV-GTIDNVIRPMLIRMG 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             LP L    G++GG+   G++GLFIGPV++A+   +    +  I E +  +S N
Sbjct: 307 ADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLFAWMREIPEPQSILSVN 361


>gi|322516709|ref|ZP_08069618.1| membrane protein [Streptococcus vestibularis ATCC 49124]
 gi|322124742|gb|EFX96180.1| membrane protein [Streptococcus vestibularis ATCC 49124]
          Length = 392

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 121/360 (33%), Gaps = 19/360 (5%)

Query: 5   MLNPQGIMRWMIMFIILV--------------SLYFLKGFFAPVLSALIIGFTSWPIYSS 50
           +LN Q +M ++I+ +I +               + FL     P++ ++++ +   P+   
Sbjct: 18  ILNNQVVMAFLILLLIGLTVLIFTKISPIFSPVIQFLTIIMLPLVISMLLYYLIKPLV-L 76

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + K   + T   ++    +  L +  +         ++  L+                 
Sbjct: 77  LVEKTGLNRTMSILLIYAILALLLVWGISTAIPNLQDQILILIRNAPSYIARANSETERW 136

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +P            LS   +  +       T+ + +I  FAS    + +   L+   +
Sbjct: 137 LKLPILSNFHGDLEAVLSDFSARMVNYAEHFSTSALTWIGTFASTVARVTVAIILTPFIL 196

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
                +  RD   +     S     F     ++   +   +     G   +AI   ++  
Sbjct: 197 F----YLLRDSQKMKHSFVSALPTRFRKTTVRMLSDINNQLEGYVQGQVTVAIVVAIMFC 252

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + + G+   +  G++   + MIP           + + +         + +   IE  
Sbjct: 253 IMFKIVGLRYGMTFGILAGFLNMIPYLGSFLAMVPVVIMGLVQGPAMLIKVLIIFVIEQT 312

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I  + + P ++G  + +  +   F L+      G+ G+ +G  + A + V+ +E     +
Sbjct: 313 IEGRFVSPLVLGNKLSIHPITIMFILLTAGSLYGVWGVLLGIPIYASVKVVVREIFDWYR 372


>gi|226307717|ref|YP_002767677.1| hypothetical protein RER_42300 [Rhodococcus erythropolis PR4]
 gi|226186834|dbj|BAH34938.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 425

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 101/317 (31%), Gaps = 14/317 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +  +I    +  L     PV  A+++    WP     I +        A I  V  + + 
Sbjct: 68  LGAWIFGWLIEKLWVIILPVALAIVVATVMWPPTRGMIKR-GMPPAAAAGITLVLSIGIL 126

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  +    + +  EL +K            +                          
Sbjct: 127 AGVIAGIVPSVVSQAPELANKTTEGINQVQDWLQ------------GPPLNLKDDQIDNA 174

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +           I               +++  ++I  FFF +DG      L ++G  
Sbjct: 175 VHAVITKVQESGTAIASGVFSGVSTASSLLVTLGLVLILAFFFIKDGPRFIPWLHAVGGG 234

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               + +++   +   +        ++++ + + +G+   + GVP    L ++T I   I
Sbjct: 235 RAGRHLEEVLTRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFIGGFI 294

Query: 255 PGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P        A+++ + +    +  A  + +       I    L+P L    +KL  +   
Sbjct: 295 PIVGAFVAGALAVLVALVANGLTTAIIVLIIILAVQQIEGNVLQPVLQSKSMKLHAVIVL 354

Query: 314 FGLVGGVRTMGLLGLFI 330
             +  G    G++G F+
Sbjct: 355 LAVAAGSSLYGIVGAFL 371


>gi|318057626|ref|ZP_07976349.1| integral membrane protein [Streptomyces sp. SA3_actG]
          Length = 443

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 97/309 (31%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      + AL+I     P+ +               + T+
Sbjct: 79  RLLVLAATVWVLMKVISAVRLVVLAFVVALLITALLQPLVARLTRH-GVPRGLATALTTL 137

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  + +L S+V    +                W  +       
Sbjct: 138 FGFLVMGLMGWFVVWQIMDNVDQLSSQVQDGIEDLRR------------WLLDSPFHVTE 185

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         D +         I ++    ++    +  F   DG  I    
Sbjct: 186 KQINDIAKNLREAIGTNTDQLTSAGIEGVTIIVEMFTGLLLAFFSTIFLLYDGQRIWGWF 245

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                   + S   G  I+A+ + + +G   ++  VP  V L VI 
Sbjct: 246 LKLVPAAAREGVAGAGPRAWNTLTSYVRGTVIVALIDAVFIGIGIYVLEVPMAVPLAVII 305

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   ++ A  +     +   I    L+PF++G  +++
Sbjct: 306 FLAAFVPLVGAVVSGALAVLVALVTQGVWAAIIVLGVVLLVQQIEGHVLQPFILGRAVRV 365

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 366 HPLAVVLSV 374


>gi|319653256|ref|ZP_08007358.1| hypothetical protein HMPREF1013_03973 [Bacillus sp. 2_A_57_CT2]
 gi|317395177|gb|EFV75913.1| hypothetical protein HMPREF1013_03973 [Bacillus sp. 2_A_57_CT2]
          Length = 361

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 108/348 (31%), Gaps = 19/348 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            I   +I+F++    YFL          F PV+ + I+ +   P+            T  
Sbjct: 14  TIFVLIIIFLLGKIDYFLWPIRALVATIFFPVVISGILYYILRPLVRLVSRSL--PKTAS 71

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V+    +    +      ++ EL   +    +        + +       S  
Sbjct: 72  IIVIFAVVLGAGYLGFNAIGNLIGSQVTELSENLPAKMEDLSDETEKVVEKNNMGMFSY- 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                                  +        +           ++ +   LF+F +D  
Sbjct: 131 ---------DQVKNKALNFLETILSGAGENVMKVFSTITSIVTVMVVVPFILFYFLKDDH 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L             KI   + K + S   G  I+A+ +G+++   Y + G+   +
Sbjct: 182 KLRPFLLKYLPDKHEEEGNKILGDIDKTLFSYVTGQFIVAVVDGVLMYFGYKIIGLEYAL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L      + ++P   P+     +I++ +         + L       +    + P ++G
Sbjct: 242 TLAFFAMFLTVVPFLGPVLGIIPAIFIGLLQGPGMVLKIILVLIAVQLLESNLVSPHVMG 301

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + L  L     L+      G +G+ I     +++ V+ K+     +
Sbjct: 302 KRLNLHPLTVIIILMAAGSIYGFIGILIAIPFYSVVKVLVKDFRRFYR 349


>gi|296333166|ref|ZP_06875619.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675328|ref|YP_003867000.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296149364|gb|EFG90260.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413572|gb|ADM38691.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 353

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 115/330 (34%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K  F P++ ++ I +   P+      K     T   ++  +         L    
Sbjct: 35  FWLVIKTIFIPLIISIFISYLLLPVTEWLHGK-GLPRTLSILVIYILFFGGIGWALYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++++ +L   + +  +    +   + +           T         ++       
Sbjct: 94  PVLIVQLTDLSENIPMFAETYNGLLLHVHN----------HTDDWPDGMHHRVDKLIRQT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                     A       LDY L    +   +F+  +D   + + +  L    +      
Sbjct: 144 ETFFAGTVEGAISGIRNVLDYFLIAATIPFLVFYMVKDIELMKKTVWYLTPKSWRKRGSA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G  ++ +  G++ G  +W+ G+P  + LG+I+ I  +IP   P   
Sbjct: 204 FLRDVDDSLGDYIRGQLLVCLILGVMAGITFWIFGLPYPLILGLISGITNVIPYFGPFIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ + +  ++     + +   I  F+    L PF+VG  +K+  +     L+ G   
Sbjct: 264 AIPALLIAMTISVKAILVVVITVFILQFMEGNILSPFIVGRSLKMHPVVIMLALLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G++G+ +     A++ V+    +    E+
Sbjct: 324 AGIVGMILAVPATAVLKVMMIHFLRMRTEH 353


>gi|302521655|ref|ZP_07273997.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302430550|gb|EFL02366.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 443

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 97/309 (31%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      + AL+I     P+ +               + T+
Sbjct: 79  RLLVLAATVWVLMKVISAVRLVVLAFVVALLITALLQPLVARLTRH-GVPRGLATALTTL 137

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  + +L S+V    +                W  +       
Sbjct: 138 FGFLVMGLMGWFVVWQIMDNVDQLSSQVQDGIEDLRR------------WLLDSPFHVTE 185

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         D +         I ++    ++    +  F   DG  I    
Sbjct: 186 KQINDIAKNLREAIGTNTDQLTSAGIEGVTIIVEMFTGLLLAFFSTIFLLYDGQRIWGWF 245

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                   + S   G  I+A+ + + +G   ++  VP  V L VI 
Sbjct: 246 LKLVPAAAREGVAGAGPRAWNTLTSYVRGTVIVALIDAVFIGIGIYVLEVPMAVPLAVII 305

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   ++ A  +     +   I    L+PF++G  +++
Sbjct: 306 FLAAFVPLVGAVVSGALAVLVALVTQGVWAAIIVLGVVLLVQQIEGHVLQPFILGRAVRV 365

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 366 HPLAVVLSV 374


>gi|209522034|ref|ZP_03270692.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209497535|gb|EDZ97732.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 596

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 98/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++  +   +++ +LYF +    P+  ++++ F   P+      +          IA + 
Sbjct: 25  GLVSLITGVVVVCALYFGREVLIPITLSVLLSFLLAPLVQML-RRLHMGQLPSIFIAVLF 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +     +    +     L        Q    V          +  S         
Sbjct: 84  ALASLLAIGALIGAQLVQLAGALPQYQEAIEQKIETVQEKTVGRADSLMTSAATALQRMA 143

Query: 130 PQSLKILSETFLKTNGIDFIPR-------------FASRFGMIFLDYCLSIIFMIIALFF 176
           P        T         +P+              A R     +    +   +++   F
Sbjct: 144 PSRPAPPHLTGRAARNAPQVPQQVEVHEPALTPVQLAQRALTPAIAPIETTFIVLVVTIF 203

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G ++     + 
Sbjct: 204 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAGRLSRYFVAQLGVNLSAGSIIAIGLAMI 263

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P          +++L   I+     A    +   +      +
Sbjct: 264 GVPGALLFGVIAALLRFVPYIGIWIAALFAVFLAAAIQPQWTMAVYTLILFIVVDVAAGQ 323

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P + G    L  L      +      G +GL +   L   I  + +
Sbjct: 324 IAEPLVYGHRSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCIVTLGR 372


>gi|167839250|ref|ZP_02465977.1| hypothetical protein Bpse38_21639 [Burkholderia thailandensis
           MSMB43]
          Length = 356

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 159/324 (49%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T +V  L +VP+    
Sbjct: 35  WVIRDFVPAIAWACVVAIALWPALRRIDALPAFHGRATLVAAALTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +  A Q GIP P  LS +P G   +  W +      +  +   + +K
Sbjct: 95  VEAVEQSHELLGWLHRAEQTGIPAPDALSHLPFGSQQASAWWQA---NLAKPLHPASAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +     +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 SVDGGSVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGALLTGVRRAFGESGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + R +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ F
Sbjct: 212 LLRRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|126436920|ref|YP_001072611.1| hypothetical protein Mjls_4349 [Mycobacterium sp. JLS]
 gi|126236720|gb|ABO00121.1| protein of unknown function UPF0118 [Mycobacterium sp. JLS]
          Length = 400

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 119/347 (34%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +  +  + +  +    YFL+GFF  ++ A +  +   P+Y     +    +   A +
Sbjct: 15  TTQKRALSVVTLLAVAFGAYFLRGFFILIVVAAVGAYLFAPLYERLRRRFG--TGLSATL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             ++ M   I+P   + +  ++++ ++V+ V        +      +         ++  
Sbjct: 73  TLLAAMLTVIIPATLVVFLAIVQITQMVTTVNQWMATTDVSTLGDRAMTFANDLIEKVPF 132

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                           +     +++           L    + +  +        +   I
Sbjct: 133 LDFRLTPDTLRDGVVTVSQRVGEWLLGVLQGAVGGVLGALAATVIFLYVFISLLVNRDKI 192

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L   L              +++ T  G  +IA+ +G+    + ++AG       
Sbjct: 193 RTLIRRLNP-LGEDITDLYLAKTGAMVKGTVKGQFVIALCQGVAGAISIYVAGFHDGFFF 251

Query: 245 GVITA-IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I    +++IP G+ I      I + + GN+     +  +  + +  +D  LRP LV  
Sbjct: 252 FAIVLSALSVIPLGSGILSIPFGIGMALFGNVIGGVFVVAFHLLVVTNIDNVLRPMLVPK 311

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +L        +  G+   G  G+ +GPVLM +I       +   K
Sbjct: 312 AARLDPALMLLAVFSGIAMFGFWGIVLGPVLMIIIVTTISVYLAVYK 358


>gi|260752852|ref|YP_003225745.1| hypothetical protein Za10_0613 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|283856300|ref|YP_162388.2| hypothetical protein ZMO0653 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|258552215|gb|ACV75161.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775296|gb|AAV89277.2| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 352

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 4/337 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIAT 67
                    II + L+ ++ F+  ++ +++I    WP++                  +AT
Sbjct: 8   TFRFIFFAGIIGLGLWTIRHFWPALIWSIVIAIAFWPLWLKLKESMGSKHEKMLAPALAT 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +++    I+PLLF  +  M + +  +             P WL  IP   +   L  K  
Sbjct: 68  LAIGVTLILPLLFFAFEIMNDFQAAIHFFQDLKNQDTAPPDWLGRIPF--FGGNLVNKWH 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    S+  L       +   +  FGM       +  F +++LFF +R G  + + 
Sbjct: 126 QFFAPSSDGSQISLHQLLNGNVINHSRAFGMNVARRITTFFFTLMSLFFLFRSGSELQKM 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++   L     ++ +  V   +R T  G+ ++ +GEG++LG  Y   G P  V  G +
Sbjct: 186 FLNVSRRLMGPDMERFAHQVVLSVRGTLDGLVLVGLGEGVLLGIIYVFTGTPHAVMFGGM 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           TAI A+IP  AP+ F  V+  L  +G+I  A  +   G + L I D  +RP L+GG  +L
Sbjct: 246 TAIAAIIPFCAPVMFCIVAAILASQGHIGAAITVVALGMLILMIADHVVRPILIGGATRL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           PFL    G++GG+ T GLLGLF+GP LMA++ +IW++
Sbjct: 306 PFLWVLIGILGGIETFGLLGLFLGPALMAVLIMIWRD 342


>gi|167770880|ref|ZP_02442933.1| hypothetical protein ANACOL_02233 [Anaerotruncus colihominis DSM
           17241]
 gi|167666920|gb|EDS11050.1| hypothetical protein ANACOL_02233 [Anaerotruncus colihominis DSM
           17241]
          Length = 369

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 97/332 (29%), Gaps = 15/332 (4%)

Query: 30  FFAPVLSALIIGFTSWPIY------------SSFISKKEESSTFLAVIATVSVMCLFIVP 77
              P    +++ F    +               F  +         +   + V+   +V 
Sbjct: 39  LLMPFFIGVVLAFVLNGVMETFEKHVFADLPRRFPRRAGLVRPLSLISTYLLVLAALVVL 98

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              +          L   +         +                + + L+   S     
Sbjct: 99  GWTVVPQLGESAITLGRNIPAYLNSLAELAARFQH---EWVLPPEFYEQLTGWLSGLADF 155

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                   + +   FA+ FG   +   + +I  I  L    +      +   +       
Sbjct: 156 LLNFIAEFVPYALNFAASFGGGIVTLVIGVIVSIHVLLTKEQLLSQARRLNRAFLPPKAA 215

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                 + +     R    G  + A+  G V      +   P  V +GV+  +  +IP  
Sbjct: 216 DSIASAASVAAGTFRRYVSGQALDALIVGAVSVIGLSVLRFPYAVLIGVVMGVTNVIPFF 275

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       + +L+  +   A    L+  I   +    + P ++GG + LP L   F + 
Sbjct: 276 GPFIGAVPGVLILLMADPIKAIWYILFVVIVQQVDGNIIAPKVIGGSVGLPPLWVLFAVT 335

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            G    G+ G+ +G  L A + ++   ++ A 
Sbjct: 336 VGGNLFGIAGMILGVPLFATVYILLGRAVRAR 367


>gi|162148843|ref|YP_001603304.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545409|ref|YP_002277638.1| hypothetical protein Gdia_3296 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161787420|emb|CAP57015.1| putative permease [Gluconacetobacter diazotrophicus PAl 5]
 gi|209533086|gb|ACI53023.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 381

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 100/354 (28%), Positives = 172/354 (48%), Gaps = 5/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE--ES 58
           MRE     +     + MF  L++LY ++GF   ++   I    +WP+Y++   + +    
Sbjct: 21  MRERHRVQRVARFLLAMFFTLLALYTIRGFLPSLIWGGIFAIVAWPLYAATRERWKSLPG 80

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            T L ++ T  +  +F+VP+         E + +V+    A   G+PVP W+  +P G  
Sbjct: 81  GTILPLLFTTGIALIFLVPMGLFALEAAREAQSVVTWANEARHSGMPVPGWIQRLPLGSA 140

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
               W +      +        L +  I    +   R G       +  IF I+ LFF  
Sbjct: 141 TLAGWWQ---DHLANPDDVSDLLHSFNIGHGMQVTQRVGTQIFHRGVLFIFAILTLFFLL 197

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG S+++Q   +    F    + I++ +   I  T  G+ ++ +GEG ++G AY +AG 
Sbjct: 198 KDGESVTRQCLVVSRRAFGKRGETIAQQIIASIHGTVAGLVLVGLGEGALMGVAYLIAGA 257

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                 GV TA+ AMIP  A I+  AV++ LL+KG    A  +   G   +FI D  +RP
Sbjct: 258 QHPFLFGVFTAVAAMIPFCAVIAVAAVTLMLLVKGATIAAIAILALGLAVIFIADHFVRP 317

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L+GG  ++PFL    G++GGV +  LLGLF+GP +M+++ ++W+       ++
Sbjct: 318 ALIGGSTQMPFLWVLTGILGGVESWNLLGLFVGPAIMSVLHLLWRNWTRDRVQD 371


>gi|261217086|ref|ZP_05931367.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261319956|ref|ZP_05959153.1| conserved hypothetical protein [Brucella ceti M644/93/1]
 gi|260922175|gb|EEX88743.1| conserved hypothetical protein [Brucella ceti M13/05/1]
 gi|261292646|gb|EEX96142.1| conserved hypothetical protein [Brucella ceti M644/93/1]
          Length = 354

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 63  LSVLMCICLVIIPMLAVFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 122 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 182 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 241 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 300

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 301 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 349


>gi|325108129|ref|YP_004269197.1| hypothetical protein Plabr_1564 [Planctomyces brasiliensis DSM
           5305]
 gi|324968397|gb|ADY59175.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 372

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 113/351 (32%), Gaps = 16/351 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +  + ++F  L    +L+    PVL    + +   P    F  +          I  V +
Sbjct: 23  LFWFGLIFAFLWCCIYLRDVLLPVLVGFGLAYALDPALELFNRRWNVPRYVSLAILYVLI 82

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +    FL    + E ++   K+            ++S  P G    +         
Sbjct: 83  VLVVVGVGFFLGPIFVEEAEQFAEKLPDQIDQLKQT--FVSSEPLGGTLQKAKESLEQSK 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            SL   +   L          + +R   +       ++ + I LF+F          L S
Sbjct: 141 GSLASSATQKLGDGF-----GWLARVVGVTGYVLFCLLTIPIFLFYFGWQFAETKDLLKS 195

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                +      +   + KV+     G  I ++ + +   + + L GVP  + LG +T I
Sbjct: 196 FIPSRYRESTLDMLSKMDKVVGQYIRGRIICSLFQIVFYSAGWALVGVPYALVLGTVTGI 255

Query: 251 MAMIPGGAPISFTAVSIYLL---------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  IP  A + +    +                ++      +       + +  L P++ 
Sbjct: 256 LGTIPWAAGLGWPVAMLLAYLDIVQGGGGESVLLWAFFWPSVVYFTVQILENYVLEPWIQ 315

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                L  +     ++ G    G  GL +   +     ++++E I    EN
Sbjct: 316 SSQTSLGPITIIVAILIGGSVAGFFGLLLAVPIAGSGKILFQEVIFPRLEN 366


>gi|302553800|ref|ZP_07306142.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302471418|gb|EFL34511.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 368

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 107/337 (31%), Gaps = 14/337 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L  +     P++  L++   +WP+      ++       A + TV  + +    +  +
Sbjct: 32  WLLGRMWSVVWPLVVGLLLTTLTWPVARFL-RRRGWPPALAASVVTVLFLLVAAGVVALI 90

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 +  EL   VV   Q                WA+           +    S    
Sbjct: 91  AVPVASQSGELTDGVVEGIQRLRE------------WAAGPPLNIGDAQINKAFDSAVAR 138

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G+  +           +   ++ +  +  +FFF +DG      L             
Sbjct: 139 AQQGVGSMVGTVVTGVSTVVGGVVTAVLALFLMFFFLKDGPKFLPWLSRQLPGRLADDVP 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +       + +       + + + +++G   W+ G+P  + L V+T + A +P    + 
Sbjct: 199 IVFARGWATLGAFVRSQAAVGLLDAVLIGLGLWILGIPLVLPLAVLTFVSAFVPIIGALF 258

Query: 262 -FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 +  L+   + +A  +     +   +     +P +    + L        +  G 
Sbjct: 259 AGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGLHAAVVLLAVTLGG 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              G++G  +   L ALIAV+W      + E  E+  
Sbjct: 319 SLAGIVGSLLAVPLAALIAVVWNYVREQLGEPPEEPD 355


>gi|24380070|ref|NP_722025.1| putative permease [Streptococcus mutans UA159]
 gi|290579951|ref|YP_003484343.1| putative permease [Streptococcus mutans NN2025]
 gi|24378063|gb|AAN59331.1|AE014998_8 putative permease [Streptococcus mutans UA159]
 gi|2952526|gb|AAC05771.1| putative permease [Streptococcus mutans]
 gi|254996850|dbj|BAH87451.1| putative permease [Streptococcus mutans NN2025]
          Length = 364

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 106/324 (32%), Gaps = 6/324 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
                K FF P L    + + + PI +   ++ +    +   +    ++ L +  +  L 
Sbjct: 34  FFSVAKTFFLPFLLGGFLYYITNPIVTFLENRFKIKRIWGITLIFAVLLSLLVFSITSLI 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++ +L+S           +       P            +        LS   + 
Sbjct: 94  PNLINQLTDLISASQNIYVGLQDLFNEWKSNPAFKNID------IPVLLKQFNLSYVDIL 147

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           TN +D +    S    +  +  + ++   + LF+  +D   +   LD            +
Sbjct: 148 TNVLDSVTVSVSSIVYMITNTVMILVLTPVILFYLLKDKDGLMPMLDRTILKNDRHNISQ 207

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   + K I     G+ I A    +     Y + GV       ++  I  +IP   P   
Sbjct: 208 LLNQMNKTISRYISGVAIDAAFIFVFALIGYQIMGVQYAFLFALVAGITNVIPYVGPYLG 267

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +   +  +        ++      I    + P +VG  +K+  L     LV G   
Sbjct: 268 LTPVVLAYVVSDPKKMIIAIIYIMTLQQIDGNIVYPRVVGSTMKIHPLTIMVLLVLGGNI 327

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GL+G+ +     A+I  I K  +
Sbjct: 328 AGLVGMLVAVPAYAIIKEIVKFLV 351


>gi|119486999|ref|ZP_01620871.1| hypothetical protein L8106_18821 [Lyngbya sp. PCC 8106]
 gi|119455928|gb|EAW37062.1| hypothetical protein L8106_18821 [Lyngbya sp. PCC 8106]
          Length = 376

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 121/334 (36%), Gaps = 9/334 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     ++ ++++  +  P+     +++        ++  ++++       L +   
Sbjct: 35  WQLQSLIVLLMISVVLAASIVPLVDWAEAQR-IPRWLAVILVYLTLIAGLTGFGLVIGPR 93

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++  LV ++ L ++  + +   L+   G    + +     +        S T     
Sbjct: 94  VFDQISLLVRQLPLFSERIVDIASALASRLGEDTPALIEDLIDT-------QSVTNWIIR 146

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +   +       +    S+I  +    +   D  ++ + L  L  + +        
Sbjct: 147 SSQQLLLRSYSITRGIVGGVFSLIIALFVSGYMVADSNTLIKSLVQLFPYPWNERLNAQV 206

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFT 263
             V + +     G  +++   G+         G+    + LG I  +  +IP   PI   
Sbjct: 207 SQVSRRMGGYIRGRLLVSGILGVATTMGLGFLGLREFALGLGAIAGVTNLIPFLGPILGA 266

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + +    F    + L   I   +    L P LVG  + +  L     ++GGV+ +
Sbjct: 267 IPALIVALAKGGFLFFWVLLLYVIAQNVETYVLDPLLVGTSVGVHPLFQLLSVLGGVQVL 326

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G+LG  I P   A +A + +   +  KE +E++ 
Sbjct: 327 GILGALIVPPWFAGVAALVENLYLKPKEEQEQLK 360


>gi|322382966|ref|ZP_08056798.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321153086|gb|EFX45544.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 365

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 113/331 (34%), Gaps = 12/331 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +      FLK   AP + A+II +   P+ +    + +       ++  +       V +
Sbjct: 41  VFSGLYKFLKAVLAPFIIAVIISYILNPVVNLLNGR-KVPRAVAVLMIYLVFFTSLWVVI 99

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    + ++ EL   +         + + LSD P    +     +         I   
Sbjct: 100 MNVTPVFVKQLGELNEHMPQLTMRAESLMQGLSDHPLLPPSVRAGIQDALFKLQHIISER 159

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  I              ++       +    F+  +D   + + + ++       
Sbjct: 160 ITKSVESIGS-----------TINMLFIAFIIPFLAFYMLKDFQLMEKAVLAIVPRSHRK 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +  K+   +   + +   G  ++    G++    YW+ G+P  + L  + AI  +IP   
Sbjct: 209 HIIKVLVDIDTALGNYIRGQLLVCFIIGILAYIGYWVIGMPYALLLATVVAIFNIIPYLG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A ++ +    +      + +   I   +    + P +VG  + +  L   F L+ 
Sbjct: 269 PFFGAAPALVVAATVSFKMVLLVAVINLIVQILEGNFISPQVVGRTLHMHPLLIIFALLV 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G    G++GL +   + A+  VI +   +  
Sbjct: 329 GGEAAGIVGLILAVPVFAVFKVILQHLSLYY 359


>gi|322833961|ref|YP_004213988.1| hypothetical protein Rahaq_3267 [Rahnella sp. Y9602]
 gi|321169162|gb|ADW74861.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 354

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 111/353 (31%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I    I+      LYFL G  AP+L A+++ +               S T 
Sbjct: 10  RRRFTDPQAIALLAILVAGFCILYFLNGILAPLLVAIVLAYLLEWPTVRLQ-HVGLSRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +    + ++ +  +      +   L++ +             L      +    
Sbjct: 69  SVSVVLIIFAGILLLGMFVIAPVTWQQGVNLMTDLPSMLNRFYDFAATLPKRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +++    +  L   + +I + + +FF  +D 
Sbjct: 125 ----VDAGIIDMMAENMRSKLSGLGESVVKYSLASLVGLLTLAIYLILVPMMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + + +   G  +  I  G+     +W+  +   
Sbjct: 181 EQMLSAVRRVLP-RDRGLAGQVWVEMNQQVTNYIRGKVLEMIIVGVATYLVFWVMDLHYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   + + +      A    LF+   +   +    + P 
Sbjct: 240 LLLAVLVGVSVLIPYIGAMLVTIPVVIVAMFQWGLGADFWTLFVAYLVVQGLDGNVIVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  L     +V      G  G+F    L  L+  +           
Sbjct: 300 LFSEAVNLHPLVIILSVVVFGGLWGFWGVFFAIPLATLVKAVVHVWPDESLNE 352


>gi|260568237|ref|ZP_05838706.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261220299|ref|ZP_05934580.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261313468|ref|ZP_05952665.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261750180|ref|ZP_05993889.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261753452|ref|ZP_05997161.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|261756621|ref|ZP_06000330.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|265985549|ref|ZP_06098284.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|265986704|ref|ZP_06099261.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|265996354|ref|ZP_06108911.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|294853728|ref|ZP_06794400.1| hypothetical protein BAZG_02708 [Brucella sp. NVSL 07-0026]
 gi|260154902|gb|EEW89983.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|260918883|gb|EEX85536.1| conserved hypothetical protein [Brucella ceti B1/94]
 gi|261302494|gb|EEY05991.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10]
 gi|261736605|gb|EEY24601.1| conserved hypothetical protein [Brucella sp. F5/99]
 gi|261739933|gb|EEY27859.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
 gi|261743205|gb|EEY31131.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
 gi|262550651|gb|EEZ06812.1| conserved hypothetical protein [Brucella ceti M490/95/1]
 gi|264658901|gb|EEZ29162.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
 gi|264664141|gb|EEZ34402.1| conserved hypothetical protein [Brucella sp. 83/13]
 gi|294819383|gb|EFG36383.1| hypothetical protein BAZG_02708 [Brucella sp. NVSL 07-0026]
          Length = 354

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 122 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 182 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 241 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 300

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 301 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 349


>gi|323968456|gb|EGB63862.1| ydiK protein [Escherichia coli M863]
 gi|327252805|gb|EGE64459.1| hypothetical protein ECSTEC7V_2050 [Escherichia coli STEC_7v]
          Length = 370

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 136/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGTKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++   
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEE 357


>gi|291437516|ref|ZP_06576906.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291340411|gb|EFE67367.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 455

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 91/321 (28%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +            ++L+I     P  +    +          +  
Sbjct: 79  WRLLVLAGTVWVLMRVISAVQLVVLAFAASLLITALLQPTVARLC-RIGVPRGPATALTA 137

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +   F+ +  M  +  L  ++                     W         
Sbjct: 138 LFGFVVIGLIGWFVTWQVMENIDHLSDQIQDGIDELRN------------WLLNSPFHVT 185

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         + I         + ++    I+  + +  F   DG  I + 
Sbjct: 186 DKQINEIAKNLREAVGANTEQITSAGIEGVTVVVEALTGILLAVFSTLFLLYDGRRIWEW 245

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  ++A+ + + +G   +   VP  V L V 
Sbjct: 246 SLKLVPAAARPGVAGAGPAAWRTLTAYVRGTVVVALIDAIFIGLGIYFLDVPMAVPLAVF 305

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP    +       +  L+   +F      +       I    L+PF++G  ++
Sbjct: 306 IFLFSFIPLVGAVVSGALAVVVALVTQGVFTGVMTLVVVLAVQQIEGHILQPFILGRAVR 365

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 366 VHPLAVVLAVTTGGMVAGIGG 386


>gi|290957836|ref|YP_003489018.1| integral membrane protein [Streptomyces scabiei 87.22]
 gi|260647362|emb|CBG70467.1| putative integral membrane protein [Streptomyces scabiei 87.22]
          Length = 452

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 94/310 (30%), Gaps = 18/310 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +            +AL++     P  +               +  
Sbjct: 116 WRLLVLAGTVWVLMRIISSVQLLVLSFTTALLVTALLQPTVARLTRH-GVPRGLATALTA 174

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +  +   F+ +  M  + +L ++V                     W  +      
Sbjct: 175 VLGFVVMGLIGWFVTWQVMENVDDLSNQVQDGIDELQR------------WLLDSPFHVT 222

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  +    +     ++  D I         + ++    I+  + +  F   DG  I Q 
Sbjct: 223 ENQINDIAKNLREAISDNTDTITSAGLEGVTVLVEALTGILLTMFSTLFLLYDGKRIWQW 282

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L                 + + +   G  I+A+ + + +G   +   VP  V L V 
Sbjct: 283 MLKLVPSAARPGVADAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVF 342

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   +F A    +       I    L+PF++G  ++
Sbjct: 343 IFLFAFIPLVGAVVSGALAVVVALVTQGVFTAVMTLVVVLAVQQIEGHILQPFILGRAVR 402

Query: 307 LPFLPTFFGL 316
           +  L     +
Sbjct: 403 VHPLAVVLAV 412


>gi|220934002|ref|YP_002512901.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995312|gb|ACL71914.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 358

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 113/350 (32%), Gaps = 12/350 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +PQ ++  +++      + F     AP+L++LI  +                    
Sbjct: 11  RHFSDPQVVILALLLIFGTAVVVFAGRLIAPLLASLIFAYLLDGAVQKLQRW-HMPRLAA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++  V  + LFI+ LL L      ++ +LV ++      G  V   L +      + E 
Sbjct: 70  VILVFVVFVTLFIITLLGLIPLLSQQVTQLVRELPAMIAQGQYVLMELPERYPQFISEEQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +   ++          T     +   +    M  + + + +I + + +FF  +D  
Sbjct: 130 VRDLIVAIRAE--------ATLLGQRMVSLSLSSAMHLVTFLVYLIIVPLMVFFLLKDKE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +I   +             ++   V   I S   G  I  +    V    + L G+   +
Sbjct: 182 AILAWITGFLP-RDRGLASEVWAEVNVKIASYVRGKFIEILIVWAVTYVTFTLFGLNYAM 240

Query: 243 ALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  +IP       T     +     G       + +   +  F+    L P L
Sbjct: 241 LLSVMVGLSVIIPYIGAAVVTIPVAMVAFFQWGLGSEFVWVLVAYGVIQFLDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               + L  +     ++      GL G+F    L  LI  + +      +
Sbjct: 301 FSEVVNLHPVAIIAAVIVFGGLWGLWGVFFAIPLATLIQAVIRSWPRHGE 350


>gi|326801059|ref|YP_004318878.1| hypothetical protein Sph21_3671 [Sphingobacterium sp. 21]
 gi|326551823|gb|ADZ80208.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 438

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 104/327 (31%), Gaps = 16/327 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+  LYFL+    P++ +++I  + +P+      +        A+++ +  + +    + 
Sbjct: 85  IIAVLYFLQSVLVPLMFSILIAISLYPVTRFLE-RFNVHRALSAILSVILAILVIAGLIW 143

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           F+ +  ++                  + +W+             T               
Sbjct: 144 FIVHQVIVIGHNGTDLQSKFLTIFNTIQQWI-------------TVKFGVEPGELTAKVK 190

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L    +     + S            ++ + +  FF         +             
Sbjct: 191 ELSNRALSNAGTYLSAAFGSVGGILAGLVIVPLFSFFLLYYRDFFREFFFHAFRSTSQDK 250

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +    +  V++S  LG+  +     ++      L GV      G + +++ ++P    
Sbjct: 251 VHETLNRIYSVVQSYLLGLITVMAIVAVLNTVGLLLMGVEYAWFFGTLASLLMLLPYIGI 310

Query: 260 ISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                      L  K + + A  +  W  +  F+    + P +VG  + +  L     ++
Sbjct: 311 AIGSILPAVFALATKDSYWYAIGVVAWFQVVQFLEGNVITPNIVGSKVSINPLMAVIAIL 370

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
            G    GL GL +   L A+I V++  
Sbjct: 371 LGGMLFGLAGLILALPLTAVIKVLFDA 397


>gi|289167764|ref|YP_003446033.1| membrane protein [Streptococcus mitis B6]
 gi|288907331|emb|CBJ22168.1| membrane protein [Streptococcus mitis B6]
          Length = 369

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 108/336 (32%), Gaps = 6/336 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +        P L    + + + PI +      + +     ++   +++   ++ 
Sbjct: 29  AIITPFVSVANTIMIPFLLGGFLYYLTNPIVNFLQKYFKINRIIGILLTLCALVWGLVIG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++     + ++  L++           +   LS  P            +        LS
Sbjct: 89  VVYFLPILINQLTSLIATSQTIYSRLQDLIVDLSTYPAFQNLD------IQATIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L II   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVTNSVGSVLSALFSTVLIIIMTPVFLVYFLLDGHKFLPMLERTVLKRDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   + + +   I     G+ I AI  G +    Y + G+   +   + + +  +IP  
Sbjct: 203 LHIAGLLKNLNATIARYISGVAIDAIIIGCLAFIGYSVIGLKYALVFAIFSGLANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I   I  +        ++  +   +    L P +VG  +K+  +     L+
Sbjct: 263 GPSIGLIPMIIANIFTDPHRMLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 G++G+ +     +++  I K      + +K
Sbjct: 323 LSSNIYGVIGMIVAVPTYSILKEISKFLSRLYENHK 358


>gi|51893523|ref|YP_076214.1| hypothetical protein STH2385 [Symbiobacterium thermophilum IAM
           14863]
 gi|51857212|dbj|BAD41370.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 367

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 119/342 (34%), Gaps = 7/342 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++  +   L+ ++   AP L A+++ +   P+ +  +        +  +    +
Sbjct: 11  ALVLSGLVLALAWGLWTIRPVLAPFLLAVVLAYLLAPLVNRLVG-LGLPRPWAILAVYAA 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +    ++ ++ L    + E++ L   + L +     +   L              + L  
Sbjct: 70  LAAAGVLVVVKLVPSALTEVRRLTEAIPLYSARAREMADGLQRWARDAGLPPELRESLDR 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +   +         +D       +       +  S+       F+  +D     ++  
Sbjct: 130 SITNIEVRSVAALHRLVD------IQTLEAAAGFLFSLALAPFLAFYLLKDLDYFRERFV 183

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 +     ++ R + +VI     G  ++ +  G +  +A  L G+   V LG+   
Sbjct: 184 RSLPRRWRQDIIQLLRELDRVISGFVRGQILLGLSVGALAAAASSLLGLRFAVLLGIWAG 243

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +M  IP   P+     ++   +  + +    + L   I   + +  L P ++G  + L  
Sbjct: 244 LMEFIPYVGPVLGAVPAVLSGLAQSPWRGLQIALVFLIIQQLENAVLSPKIMGESVGLHP 303

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +     ++ G    G  GL +     AL+ V+W   +  + E
Sbjct: 304 IGVLLVVLAGGYLAGPWGLILAVPAAALVRVLWSFVVARLTE 345


>gi|262043269|ref|ZP_06016400.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039368|gb|EEW40508.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 341

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/313 (22%), Positives = 128/313 (40%), Gaps = 3/313 (0%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           + +L A I+     P+ +   ++  E +   A++  V +  +   PL  +      E+  
Sbjct: 3   SAILWAAILAVIFNPVKNKIRTRLGERNGLAALMTIVIICLIVFTPLAIILSSLAYELNL 62

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           + SK+   +     V   L     G   S L   +L   Q ++          G  ++  
Sbjct: 63  VYSKLQHNDTQFPTVVASLFAHLPGWARSFLADHNLDSAQQIQQQLSDAALK-GGQYLAG 121

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A   G     + +S   M+  LFF  +DG  +   +      L     + +      V 
Sbjct: 122 SAFLIGKGTFGFTVSFGIMLYLLFFLLKDGPYLVLLILESLP-LSSYVKQHLFAKFAAVA 180

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLL 270
           R+T  G   +A+ +G + G A+W+AG+   +  G + A +++IP     I +   +IYL 
Sbjct: 181 RATVKGTVAVALAQGALGGFAFWIAGLDGSILWGALMAFLSLIPAVGSAIIWVPAAIYLF 240

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G ++    +  +  I + +VD  LRP LVG   ++P        +GG+   G+ G  I
Sbjct: 241 ATGQLWQGAFIVGFFVIVIGLVDNILRPLLVGKDTRMPDYLILIATLGGMEIYGINGFVI 300

Query: 331 GPVLMALIAVIWK 343
           GP++ AL    W 
Sbjct: 301 GPLIAALFIACWN 313


>gi|323344768|ref|ZP_08084992.1| membrane protein [Prevotella oralis ATCC 33269]
 gi|323094038|gb|EFZ36615.1| membrane protein [Prevotella oralis ATCC 33269]
          Length = 363

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 120/356 (33%), Gaps = 11/356 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +++  +L  +  L     P   A +  +  +PI     +K       LA++ T+
Sbjct: 13  RLAGTILLVGAVLYGVNCLSSVLLPFFIAWLFAYLLYPIVKFVQNKLRVKVRVLAILITM 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +  +L+L    ++E  E +  V+    H       ++ +               
Sbjct: 73  LFVIGIVGGILYLIIPPIIEQFEKLGDVLSRWIHQTTNTNNITALIQKWLQDNQQEVEKF 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +          F+ + AS          ++ +  ++ +FF   D   +++  
Sbjct: 133 FRSKDFTDAVKTAVPQVFSFVGQTASVVIS-----IVASLITLLYMFFILLDYEFLTENW 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +      A+W  + + V + + +   G  ++A+  G++    + +   P  + LG++ 
Sbjct: 188 IRIFPQKHRAFWSDLMKDVERELNNYIRGQCLVALCMGIMFCIGFTILDFPMAIGLGILI 247

Query: 249 AIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            I+ ++P     +    +   +       +              +   I D  + P ++G
Sbjct: 248 GILDLVPYLHTFALIPTAFLAMLKAADTGQSFWLIFGLAVGLFILIQAITDMIITPKIMG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             + L        L      +G +GL I   L  L+   W+  +    + KEK   
Sbjct: 308 KAMGLNPAILLLSLSVWGTVLGFIGLIIALPLTTLLIAYWQRYVTKEYQIKEKSKE 363


>gi|170726523|ref|YP_001760549.1| hypothetical protein Swoo_2171 [Shewanella woodyi ATCC 51908]
 gi|169811870|gb|ACA86454.1| protein of unknown function UPF0118 [Shewanella woodyi ATCC 51908]
          Length = 366

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 120/347 (34%), Gaps = 11/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  I +++YF  G  AP++ ALI+ F      +  + K   + T 
Sbjct: 10  KERFSDPQAVTLVFILLGIALAIYFAGGLLAPLIVALILAFLLEWPVAQML-KIGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + ++  L L      +   L++ +      G+   +   +      + E
Sbjct: 69  AASLVLVVFIGVMLLITLGLVPSIWKQGVALITDLPTMLDKGLLTAQTYVNQYPQFVSPE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     S+    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QL-------DSMVAELKKMLDTQHLLDIGKQILGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +              +K+   + + I +   G  I  +  G+V    + +  +   
Sbjct: 182 DQLIKGSKRFIPT-NRELARKVWFEMDQQIFNYIRGKVIEIVIIGVVSYLFFAIMDMRYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T    +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGFSPEFGYLMLGYGIIQALDGNLLVPL 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L    + L  +     ++      G+ G+F    L +L+  +     
Sbjct: 301 LFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVINAWP 347


>gi|332162580|ref|YP_004299157.1| hypothetical protein YE105_C2960 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606680|emb|CBY28178.1| putative permease PerM (=YfgO) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666810|gb|ADZ43454.1| hypothetical protein YE105_C2960 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 354

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 116/350 (33%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 69  AASIVLVVFGGIALLAVFVVAPTVWQQGNNLLSDMPKMLNKFNAFAQTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRSKLSGMGESVVKFSLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVLEMVVVGVATYLVFFVLGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|218282593|ref|ZP_03488831.1| hypothetical protein EUBIFOR_01413 [Eubacterium biforme DSM 3989]
 gi|218216464|gb|EEC90002.1| hypothetical protein EUBIFOR_01413 [Eubacterium biforme DSM 3989]
          Length = 397

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/370 (14%), Positives = 119/370 (32%), Gaps = 20/370 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILV--------SLYFLKGFFAPVLSALIIGFTSWPIYSSFI 52
           M++ ++     +   I+F  ++        S+ F+     P L  + + F          
Sbjct: 21  MKQRIIVYSASLIIAILFFTILNRFKDITRSIQFIITILFPFLLGIGLAFILNNPQKWVE 80

Query: 53  SKK--------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           +K         +        I  +  +   I+    +    +  +++    V   +   I
Sbjct: 81  NKLLANTPMQNKHKRILSTGIVFILTIGFLILFFSIIIPNTIDSVRQFSKNVASYSDTLI 140

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              +  +                           T + T  I  I  ++  F   F++  
Sbjct: 141 GYTKDFAYKLNISEKQVEQLLINFD----ITKKITSVLTESIPKIASYSYSFVKGFINII 196

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L+++     L         I +   SL +  F  Y    +     V     +G  I +  
Sbjct: 197 LALVSAFYILLDRETLVKGIKKLNYSLFDKNFANYLTLWTNDAKTVFEQYIVGNIIDSFI 256

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G++      +  +P    + +I  +  +IP   P       I +L   + F+A    ++
Sbjct: 257 VGVICYFGALVLKLPYASMIALIIGVTNVIPVFGPFLGAIPVIIILCLIDPFSALIFTIF 316

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I        ++P ++G  + +      F +  G    G++G+F+G  + ALI     +
Sbjct: 317 IFILQQCDGNIIKPIVLGDKLGMSGFWILFSVTVGGALFGVVGMFLGVPIFALIYAGVHD 376

Query: 345 SIMAIKENKE 354
            I     NK+
Sbjct: 377 YIQVRLRNKK 386


>gi|168204576|ref|ZP_02630581.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|170663763|gb|EDT16446.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
          Length = 391

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 104/336 (30%), Gaps = 16/336 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------SSTFLAVIA 66
           +   L ++     P++  + I F        F  K                       + 
Sbjct: 31  VFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVT 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      +LF+       + +L   +    +        +++              
Sbjct: 91  IIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEV---NMNNYADSTVLLSKVWDQ 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +     + + T L      ++           +D+CL+ +  I  L    +    I +
Sbjct: 148 VMNTWQEILKTVTHLFGGLASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           +I +   +V     +G    A+  G +      +  +P    + V
Sbjct: 208 VMYAYLRGDIADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    ++IP       T  S +L+   N   A    ++      +    + P +VGG + 
Sbjct: 268 LVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 328 LSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|146306684|ref|YP_001187149.1| hypothetical protein Pmen_1653 [Pseudomonas mendocina ymp]
 gi|145574885|gb|ABP84417.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 362

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 145/341 (42%), Gaps = 3/341 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                    ++  + +   + L  F+  V  A+++     P+      +        A++
Sbjct: 13  SVEHKAFILLLALVTIAFFWILLPFYGAVFWAIVLAVVFAPLQQRLARRFGGRGNLSALL 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + I+P++F+    + E   L  ++               ++       +L   
Sbjct: 73  TLIVCLLVAILPVIFVISAVVAEGTSLYQRLESGELDIGAYVTNTIEMLPPFMQDQLHRF 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +S+ + L+          G  ++       G +  ++ +    M+  LFF  RDG +++
Sbjct: 133 GMSNLEGLREQISKGAM-AGSQYLATKVFVIGQMTFEFLIGFFIMLYLLFFLLRDGRTLA 191

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +    L     +++     +V+R+T  G  ++A  +G + G   W+ G+PS +  G
Sbjct: 192 RDVRTAVP-LGDTTKRRLQIKFTRVVRATVKGNIVVAAVQGALGGLILWVLGLPSPLLWG 250

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A ++++P     + +  ++ YLL+ G+++    L ++G + + +VD  LRP LVG  
Sbjct: 251 ALMAFLSLLPAVGAGLVWAPMAAYLLLSGSVWQGVTLSVFGVLVISLVDNILRPILVGKD 310

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            ++P        +GG+  +GL G  IGP++ AL    W   
Sbjct: 311 TRMPDYLILTSTLGGLALLGLNGFVIGPLVAALFVASWNLF 351


>gi|239929181|ref|ZP_04686134.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 452

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 95/320 (29%), Gaps = 14/320 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++       ++L+I     P  +    +          +  +
Sbjct: 77  RLLVLAGTVWVLMRVISAVQLVVLAFAASLLITALLQPTVARLC-RIGVPRGPATALTAL 135

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  +  L  ++                     W          
Sbjct: 136 FGFVVIGLIGWFVTWQVMENIDHLSDQIQDGIDELRN------------WLLNSPFHVTD 183

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         + I         + ++    I+  + +  F   DG  I +  
Sbjct: 184 KQINEIAKNLREAVGANTEQITSAGIEGVTVVVEALTGILLAVFSTLFLLYDGRRIWEWS 243

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  ++A+ + + +G   +   VP  V L V  
Sbjct: 244 LKLVPAAARPGVAGAGPAAWRTLTAYVRGTVVVALIDAIFIGLGIYFLDVPMAVPLAVFI 303

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP    +       +  L+   +F      +       I    L+PF++G  +++
Sbjct: 304 FLFSFIPLVGAVVSGALAVVVALVTQGVFTGVMTLVVVLAVQQIEGHILQPFILGRAVRV 363

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  G    G+ G
Sbjct: 364 HPLAVVLAVTTGGMVAGIGG 383


>gi|168182996|ref|ZP_02617660.1| putative transporter [Clostridium botulinum Bf]
 gi|237794435|ref|YP_002861987.1| putative transporter [Clostridium botulinum Ba4 str. 657]
 gi|182673805|gb|EDT85766.1| putative transporter [Clostridium botulinum Bf]
 gi|229261628|gb|ACQ52661.1| putative transporter [Clostridium botulinum Ba4 str. 657]
          Length = 367

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 107/330 (32%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +  +    +P + A II +   P+   F  + +       +I  V  + + ++ L 
Sbjct: 36  VFSGIGKVFKILSPFIIAFIIAYILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLS 95

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + ++   +      G  +   L      +  +   +          I    
Sbjct: 96  MIVPKVFQSIMDIFQNIPYYTNKGYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIA 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              + G++ I      F    ++    +I  I  L    +  ++  + +  +    +   
Sbjct: 156 SFTSVGLNTILSQTISFTTFMVNLVFGLIIAIYVLNDREKFTYNSKRVVFLIFREKYGEK 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  R V  +I+       + ++  GL+      +   P  + + +I  +  MIP   P
Sbjct: 216 IIEFFRTVNSMIKLYIGIKALDSLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGP 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ + +      A  + ++  +        L P LVG  + L       G+  G
Sbjct: 276 FIGMIPAVVINLFYVPVKALWVLIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               G+ G+ +    MA+I +   +     
Sbjct: 336 GSLFGVWGMLLASPAMAVIKIYTTKLAEKY 365


>gi|313905990|ref|ZP_07839344.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
 gi|313469174|gb|EFR64522.1| protein of unknown function UPF0118 [Eubacterium cellulosolvens 6]
          Length = 454

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 108/361 (29%), Gaps = 23/361 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------------EESS 59
           +   + V++ +L     P+L    I +   P+                          S 
Sbjct: 88  VASAVGVTIEWLGVLLRPLLIGFAIAYLLDPLAGRLEKVLNGVKKKLRKPNAKKPMGSSR 147

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +A + V+   ++    +       ++  +  +   +         L      +  
Sbjct: 148 GLAVALAWLVVLTAIVLVASMIVSTISHSVQ--LVSLNSLDSLVYSFADTLKSFSKSITG 205

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +       S   S          + G   +                + IF +I   +F  
Sbjct: 206 ALKQMHIPSAEISSYTQKLGETISKGFSEMATGMLFSLKNVTGIVSTTIFALIFGIYFML 265

Query: 180 DGFSISQQL----DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           DG  +         SL           + +   +V      G  +  +   +V+  A  L
Sbjct: 266 DGEGLKHYWGHVYHSLVSDSVSRRTSDLIKNADRVFSGYIRGQFLDGVFIAVVITIALSL 325

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDK 294
            GV   V +G++T I  ++P          +I + L+  +I       +   +   I   
Sbjct: 326 CGVKYAVIIGILTGIGNLVPYLGSFIAYTTTILVCLVSFDIKRMIIAIIVIFVVQTIDGN 385

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            + P L+   I +  +     L+ G    GLLG+ +     AL+ + +++ I      K 
Sbjct: 386 VVNPKLLSSSISIHPMLVIASLIIGAAIGGLLGMLLAVPSGALVKIYFEKFIEYRAAKKT 445

Query: 355 K 355
           +
Sbjct: 446 E 446


>gi|218705186|ref|YP_002412705.1| putative inner membrane protein [Escherichia coli UMN026]
 gi|293405185|ref|ZP_06649177.1| inner membrane protein [Escherichia coli FVEC1412]
 gi|298380829|ref|ZP_06990428.1| inner membrane protein [Escherichia coli FVEC1302]
 gi|300898531|ref|ZP_07116864.1| hypothetical protein HMPREF9552_02700 [Escherichia coli MS 198-1]
 gi|301026918|ref|ZP_07190314.1| hypothetical protein HMPREF9534_05215 [Escherichia coli MS 69-1]
 gi|218432283|emb|CAR13173.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|291427393|gb|EFF00420.1| inner membrane protein [Escherichia coli FVEC1412]
 gi|298278271|gb|EFI19785.1| inner membrane protein [Escherichia coli FVEC1302]
 gi|300357795|gb|EFJ73665.1| hypothetical protein HMPREF9552_02700 [Escherichia coli MS 198-1]
 gi|300395265|gb|EFJ78803.1| hypothetical protein HMPREF9534_05215 [Escherichia coli MS 69-1]
          Length = 370

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/358 (17%), Positives = 136/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++   
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQPEE 357


>gi|167565423|ref|ZP_02358339.1| hypothetical protein BoklE_22909 [Burkholderia oklahomensis EO147]
          Length = 356

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 92/324 (28%), Positives = 156/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T +V  L +VP+    
Sbjct: 35  WVIRDFIPAIAWACVVAIALWPALRRIDAHPGFHGRATLVAAALTTAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +  A Q GIP P  L+ +P G   +  W        +  +  E  +K
Sbjct: 95  VEAVDQSHELLGWLHRAEQTGIPAPDALAHLPFGSQQASAWWHA---YLAKPLHPEAAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGGAVVTFGRHFGSRIAHAAVLFGFMLVTLFVIFQAGPRLSGALLTGVRRAFGDNGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGVAYAFAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G + +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGAVGWAIGLAAFGFVVVFVAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLFIGP LM ++ V+W E +
Sbjct: 332 FGLLGLFIGPALMTVLTVLWVEWV 355


>gi|159035990|ref|YP_001535243.1| hypothetical protein Sare_0322 [Salinispora arenicola CNS-205]
 gi|157914825|gb|ABV96252.1| protein of unknown function UPF0118 [Salinispora arenicola CNS-205]
          Length = 487

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 101/348 (29%), Gaps = 18/348 (5%)

Query: 12  MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R + + I+  +L      ++    P+  AL++     P        +    +    +  
Sbjct: 142 WRLLAIGIVAWALLKIVGQIRIVIIPLAIALLLSALLAPAVGWLFRAR-FPRSLATAVVL 200

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  +   +  L  +    +  + EL  K     +      R                +  
Sbjct: 201 VGGLAAVVGTLTLVVNEFIQGVPELSEKSSQGVRQIQDWLRTGPLHLDDRQLDNYINEAE 260

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +    +   A        +     I ++ A FFF RDG  I + 
Sbjct: 261 KW------------INDNTAGLTSGALSTAATLAEVLTGTILVLFATFFFLRDGGRIWRF 308

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L             R   + + +      ++A  + L +G    +  +P    L  +
Sbjct: 309 LVRLLPVNARWKVDDAGRASWQTLGAYVRATVLVAFIDALGIGIFLVIFEIPFAFPLAAL 368

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP     +S     +  L+      A  +         +    L+P ++G  + 
Sbjct: 369 VFLASFIPIVGATLSGGVAVLVALVDSGPITALIILGVVIGVQQLEGHVLQPLIMGRAVA 428

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  L    G+  GV   G+ G  I   L+A++    +           
Sbjct: 429 IHPLAVIVGIAAGVVLAGVTGALIAVPLIAVLNTAVRRLAARSVPETP 476


>gi|78188186|ref|YP_378524.1| hypothetical protein Cag_0203 [Chlorobium chlorochromatii CaD3]
 gi|78170385|gb|ABB27481.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
          Length = 362

 Score =  127 bits (320), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/360 (20%), Positives = 149/360 (41%), Gaps = 6/360 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       Q I+  +++ I  +    ++ F   V+ A I    + P+Y+ F        +
Sbjct: 1   MSNNHSTNQRILLLLLLVISALFFTMIRYFLLVVVLAAIFSALAMPVYNRFERGLRGKRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  ++++ + ++PL  L    + +   L +  V   Q  +  P         ++  
Sbjct: 61  LSAIMTLLTLLFIVVLPLAILLGLVVKQAIRLSNVAVPFVQEQLLTPSQFDHHLQSLFFY 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 L   +   +   + L T     +    S F    +   +     +  +FFF RD
Sbjct: 121 PE----LVLYREEILQKVSELATKFGTLLFNAISSFTYSAVTEIVLFFVFLYTMFFFLRD 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + Q + +L        + ++      V R+T  G  ++ + +G + G A ++AG+ S
Sbjct: 177 GKQMLQSMLALLPLSHTDQY-RLLDKFLSVTRATLKGSLVVGMVQGSLAGMALYMAGIES 235

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G + + +++IP     + +    IYL   G+   A  + L+  I +  +D  +RP 
Sbjct: 236 ALFWGTVMSFLSLIPVLGSALVWIPAVIYLATIGSYPQALGVLLFCMIVVGQIDNIIRPI 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           LVG   ++  L  FFG +GG+   G  G+ +GP++ AL   IW+    +  +    I  N
Sbjct: 296 LVGRDTQMHELLIFFGTLGGIGMFGFFGVILGPIVAALFTTIWEMYAESFGDYLSTIQKN 355


>gi|18309702|ref|NP_561636.1| hypothetical protein CPE0720 [Clostridium perfringens str. 13]
 gi|168209902|ref|ZP_02635527.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|18144379|dbj|BAB80426.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|170712033|gb|EDT24215.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 391

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 104/336 (30%), Gaps = 16/336 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------SSTFLAVIA 66
           +   L ++     P++  + I F        F  K                       + 
Sbjct: 31  VFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVT 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      +LF+       + +L   +    +        +++              
Sbjct: 91  IIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEV---NMNNYADSTVLLSKVWDQ 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +     + + T L      ++           +D+CL+ +  I  L    +    I +
Sbjct: 148 VMNTWQEILKTVTHLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           ++ +   +V     +G    A+  G +      +  +P    + V
Sbjct: 208 VMYAYLRGDIADKILEVGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    ++IP       T  S +L+   N   A    ++      +    + P +VGG + 
Sbjct: 268 LVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 328 LSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|114563724|ref|YP_751237.1| hypothetical protein Sfri_2557 [Shewanella frigidimarina NCIMB 400]
 gi|114335017|gb|ABI72399.1| protein of unknown function UPF0118 [Shewanella frigidimarina NCIMB
           400]
          Length = 404

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 106/341 (31%), Gaps = 22/341 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++++ +  +  +    + IIL  +        P + +  +     P        +     
Sbjct: 4   LQQSPMAVRSFVVMACVVIILAGIKTASPIVVPFVLSAFLAVICNPAIVLMTRYRIPK-- 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               ++ + +M   ++  L+L       + E   ++    +  I    W+ +        
Sbjct: 62  ---WLSIILMMGFIVLMGLWLASLVGSSVTEFSKEMPKYREQLIEQFAWILEKLQDFNIQ 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               K L +                +       S  G +  +  L I+ ++  LF     
Sbjct: 119 ISQQKVLDYFD----------PGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSM 168

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  LD+      P    K      + +    +  T++++   +V+G    + GV  
Sbjct: 169 PRKFHLALDA------PDKRLKQIDKFLQSVNQYMVIKTLVSLATAVVVGIGLTIIGVDY 222

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   VI  +   IP    I       +   I+     A    L       ++   + P 
Sbjct: 223 ALLWAVIAFLFNYIPNIGSIIAAIPAVLLAFIQMGPGAAGITGLLYVGTNMVMGNMVEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +G  + L  L  F  L+     +G +G+ +   L  ++ +
Sbjct: 283 FMGRGLGLSTLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKI 323


>gi|169344461|ref|ZP_02865430.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169297381|gb|EDS79490.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
          Length = 391

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 104/336 (30%), Gaps = 16/336 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------SSTFLAVIA 66
           +   L ++     P++  + I F        F  K                       + 
Sbjct: 31  VFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVT 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      +LF+       + +L   +    +        +++              
Sbjct: 91  IIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEV---NMNNYADSTVLLSKVWDQ 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +     + + T L      ++           +D+CL+ +  I  L    +    I +
Sbjct: 148 VMNTWQEILKTVTHLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           +I +   +V     +G    A+  G +      +  +P    + V
Sbjct: 208 VMYAYLRGDIADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    ++IP       T  S +L+   N   A    ++      +    + P +VGG + 
Sbjct: 268 LVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 328 LSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|227547834|ref|ZP_03977883.1| integral membrane protein [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227080127|gb|EEI18090.1| integral membrane protein [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 502

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 94/321 (29%), Gaps = 17/321 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFF---APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           +   +I+    +  Y L+  +    P+L  LII    WP   +   +    S    ++  
Sbjct: 84  LRFIIIVAATALLFYLLRYVWFGLLPILLGLIISTVLWPPVRAL-RRVGLPSALAVLVVL 142

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +    +  +      +   L+ +        + +              E   +  
Sbjct: 143 VLSFAIIGGIIAAMAPIVRDQGGALIVQAQAGFNELLRLTEENLRFIEAERVQEGVAQFT 202

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +                 I                +++  +I  FFF +DG      
Sbjct: 203 EFMRGQ------------ASNIASGVFSGLGAVASVGTTLVLTLILTFFFLKDGDQFLPF 250

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +          +  ++       +        I++  + + +G    L GVP    L V+
Sbjct: 251 VRKYSGVRAGWHLTEVLMRSWNTLSGFIRTQAIVSAVDAVFIGVGLILLGVPLWPVLVVV 310

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T     IP     +  A+S+ + L+     NA  + L       I    L+P L    + 
Sbjct: 311 TFFAGFIPIIGAFTAGALSVVVALVSNGFTNAILVLLLVIAVQQIEGNVLQPILQSRAMG 370

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           L        +  G    G++G
Sbjct: 371 LHAAVVLLSVALGGTLFGIIG 391


>gi|163851489|ref|YP_001639532.1| hypothetical protein Mext_2065 [Methylobacterium extorquens PA1]
 gi|218530296|ref|YP_002421112.1| hypothetical protein Mchl_2339 [Methylobacterium chloromethanicum
           CM4]
 gi|163663094|gb|ABY30461.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
 gi|218522599|gb|ACK83184.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 370

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 114/350 (32%), Gaps = 10/350 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+   I+ +++  LY L+    P ++ L + +   P+      +         ++   
Sbjct: 4   RAIIGLSILAVVVFLLYELREVMLPFVAGLALAYLLDPLADRLE-RLGLGRLAATLLILA 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  F+V L+ +      ++  LV+ +         +         G     +    + 
Sbjct: 63  GFVVGFVVLLIIVVPLAAGQIASLVNSLPTMVGRLQSILVE----RAGPLLQRIGGTEVV 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +             +         +     ++   +  F+   D   +   L
Sbjct: 119 NELQSSVGTLVGQGGAWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIAAL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D           ++++  +   +     G +++ +  G       +L G+   V +G+I+
Sbjct: 179 DGWVPPRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMIS 238

Query: 249 AIMAMIPGGAPISFT-----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  IP    ++          +     G+  +         +  F+    + P LVG 
Sbjct: 239 GFLTFIPYVGTLTGFLLSVGVALVQWWPSGDWLHIGLTVGVFLVGQFLEGNVISPKLVGD 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +   F L+      G LGL +   + A I V+ +  I    E+K
Sbjct: 299 SVGLHPVWLMFALLAFGSLFGFLGLLLAVPVAASIGVVVRFGIERYLESK 348


>gi|158422562|ref|YP_001523854.1| putative permease [Azorhizobium caulinodans ORS 571]
 gi|158329451|dbj|BAF86936.1| putative permease [Azorhizobium caulinodans ORS 571]
          Length = 364

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 109/341 (31%), Gaps = 9/341 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
                + +++++++ L+    P +    I +   P+      +        A+     ++
Sbjct: 9   FWIGTLVVLILAMWVLREILLPFVVGTAIAYFLNPLVERLS-RLGIGRMPAALFMIGLLL 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +V LL +      ++ E +  +         +    +                    
Sbjct: 68  LVVVVLLLVVLPIMSGQLYEFIQNMPSYVTRLQRLVTEENKEWVDQIFGTRLPDIQKSLS 127

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L     ++L               G   L     ++   +  F+   D  S+ + +DS 
Sbjct: 128 DLMSQGVSYLLGLLS-----SLWSGGQALLSVFALVVVTPVVAFYVLCDWNSMVENVDSW 182

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    +++ R +   +     G  ++ +  G     A  +AG+   + +G+++  +
Sbjct: 183 IPVHQRPVVRRLGREMDMAVAGFVRGQALVCLLLGSYYAIALSMAGLNFGLIIGIVSGFI 242

Query: 252 AMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             IP    ++   +++    +    +      +F    +   I    L P LVG  I + 
Sbjct: 243 TFIPYVGSLTGLVLAMGVAIVQFFPDWAMIGTVFGIFIVGQTIEGYILSPKLVGDSIGVH 302

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +   F L       G +GL +   L A   V+ + +    
Sbjct: 303 PVWLMFALFAFGYLFGFVGLLLAVPLTAATGVLVRFAFRQY 343


>gi|170760921|ref|YP_001786531.1| putative transporter [Clostridium botulinum A3 str. Loch Maree]
 gi|169407910|gb|ACA56321.1| putative transporter [Clostridium botulinum A3 str. Loch Maree]
          Length = 367

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 107/330 (32%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +  +    +P + A II +   P+   F  + +       +I  V  + + ++ L 
Sbjct: 36  VFSGIGKVFKILSPFIIAFIIAYILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLS 95

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + ++   +      G  +   L      +  +   +          I    
Sbjct: 96  MIVPKVFQSIMDIFQNIPYYTNKGYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIA 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              + G++ I      F    ++    +I  I  L    +  ++  + +  +    +   
Sbjct: 156 SFTSVGLNTILSQTISFTTFMVNLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEK 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  R V  +I+       + ++  GL+      +   P  + + +I  +  MIP   P
Sbjct: 216 IIEFFRTVNSMIKLYIGIKALDSLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGP 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ + +      A  + ++  +        L P LVG  + L       G+  G
Sbjct: 276 FIGMIPAVVINLFYVPVKALWVLIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               G+ G+ +    MA+I +   +     
Sbjct: 336 GSLFGVWGMLLASPAMAVIKIYTTKLAEKY 365


>gi|332076154|gb|EGI86620.1| hypothetical protein SPAR68_0878 [Streptococcus pneumoniae GA41301]
          Length = 328

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 108/323 (33%), Gaps = 6/323 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L    + + + PI +      + +     +I   +++   ++ +++L    + ++ 
Sbjct: 1   MIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPILINQLS 60

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+            +   LS+ P            +        LS   +  N ++ + 
Sbjct: 61  SLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSYVDILQNILNSVS 114

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     +   L +I   + L +F  DG      L+         +   + + +   
Sbjct: 115 NSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLKNLNAT 174

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G++I AI  G +    Y + G+   +   + + +  +IP   P       I   
Sbjct: 175 IARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIPMIIAN 234

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           I  +        ++  +   +    L P +VG  +K+  +     L+      G++G+ +
Sbjct: 235 IFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGVVGMIV 294

Query: 331 GPVLMALIAVIWKESIMAIKENK 353
                +++  I K      + +K
Sbjct: 295 AVPTYSILKEISKFLSRLYENHK 317


>gi|271500197|ref|YP_003333222.1| hypothetical protein Dd586_1651 [Dickeya dadantii Ech586]
 gi|270343752|gb|ACZ76517.1| protein of unknown function UPF0118 [Dickeya dadantii Ech586]
          Length = 366

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 130/349 (37%), Gaps = 4/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+            +   ++
Sbjct: 11  LARILFSLLFIGIMIIACFWVVQPFILGFAWASMVVIATWPLLIRLQQILWGYRSLAVIV 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ LF+ P   L    +     L++ V    +   P   WL  IP           
Sbjct: 71  MTILLVLLFVFPTSILVSSVIDNASNLINWVSAQGRMTPPSLDWLQSIPLVGAKLHSSWH 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+H     ++++       I     +          + +    M++     Y  G  ++
Sbjct: 131 ALAHSGGPALMAK---IQPYIGQTASWVVSQAAHVGRFLMHCALMVLFSVLLYSKGDQVA 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L          +  + IR+  LG+ + AI + ++ G    LAG+P    L 
Sbjct: 188 LGVRRFAIRLGGQGGDSAVILAAQAIRAVALGVVVTAIVQSVLGGIGLALAGIPYTTLLT 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  +   G         I+L   G+    T L +W  +   + D  +RP L+    
Sbjct: 248 VLMFLSCVAQIGPLTVLVPAIIWLYWSGDTTWGTVLLVWSCVVGTL-DNIIRPLLIRMGA 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP L    G++GG+   G++GLFIGPV++A+   +    + A  E + 
Sbjct: 307 DLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKASPEPQP 355


>gi|194447650|ref|YP_002046556.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200386480|ref|ZP_03213092.1| permease PerM [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205360471|ref|ZP_02683443.2| permease PerM [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|194405954|gb|ACF66173.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|199603578|gb|EDZ02123.1| permease PerM [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205349638|gb|EDZ36269.1| permease PerM [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
          Length = 362

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 17  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 76  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 135

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 136 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 187

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 188 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 246

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 247 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 307 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 355


>gi|62317671|ref|YP_223524.1| hypothetical protein BruAb2_0762 [Brucella abortus bv. 1 str.
           9-941]
 gi|83269654|ref|YP_418945.1| hypothetical protein BAB2_0776 [Brucella melitensis biovar Abortus
           2308]
 gi|225686264|ref|YP_002734236.1| hypothetical protein BMEA_B0439 [Brucella melitensis ATCC 23457]
 gi|254691168|ref|ZP_05154422.1| hypothetical protein Babob68_13648 [Brucella abortus bv. 6 str.
           870]
 gi|254695528|ref|ZP_05157356.1| hypothetical protein Babob3T_12990 [Brucella abortus bv. 3 str.
           Tulya]
 gi|254698951|ref|ZP_05160779.1| hypothetical protein Babob28_14959 [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254732398|ref|ZP_05190976.1| hypothetical protein Babob42_14739 [Brucella abortus bv. 4 str.
           292]
 gi|256111637|ref|ZP_05452627.1| hypothetical protein Bmelb3E_03218 [Brucella melitensis bv. 3 str.
           Ether]
 gi|256256354|ref|ZP_05461890.1| hypothetical protein Babob9C_03093 [Brucella abortus bv. 9 str.
           C68]
 gi|261215918|ref|ZP_05930199.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|62197864|gb|AAX76163.1| hypothetical membrane protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939928|emb|CAJ12942.1| Protein of unknown function UPF0118 [Brucella melitensis biovar
           Abortus 2308]
 gi|225642369|gb|ACO02282.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
 gi|260917525|gb|EEX84386.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
 gi|326410623|gb|ADZ67687.1| conserved hypothetical protein [Brucella melitensis M28]
          Length = 352

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|326804323|ref|YP_004322141.1| hypothetical protein HMPREF9243_2032 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651024|gb|AEA01207.1| putative membrane protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 404

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 111/350 (31%), Gaps = 11/350 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVS 69
           I+  L  +     P+    ++ +    + S +                      V+A ++
Sbjct: 28  IVSWLGQVWSIAYPITLGAMMAYVVNILMSLYEKYLWPHADKDWLAKIRRPIAIVLALLT 87

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI-PGGMWASELWTKHLS 128
           ++ +  + L  +    +  +   +  +    Q    +     D+ P  +        +  
Sbjct: 88  ILAIIALTLGLIIPQLVAVVTNFMEILPRLFQSLDRLLERYEDLYPEIVSYMGNLDLNWQ 147

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     +     L ++ I       +      +   ++II     L    R G    +  
Sbjct: 148 NMVRRTVSFAQGLTSSLIGSTIGAVTSVASWIVTIFIAIIITFYILMSKERLGQQFHRLT 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +  +         +  +      +   G  + A   G ++G   W+ G P    +GV+T
Sbjct: 208 KAYLKDKRYNQIHYVLAMANDAFYNFIAGEVVEAAILGCMVGFGMWIFGFPYASMIGVLT 267

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A+IP         +   L++  +   A    ++  +   I    + P +VG  + LP
Sbjct: 268 GVTAIIPLLGAYISGGLGFLLILMHSPVQALLFVVFIVVVQQIEGNLIYPKVVGNSLGLP 327

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +     +  G   MG+ G+ IG  + +    + K  +   +   +    
Sbjct: 328 GMWVLIAVTVGGGLMGVAGMLIGVPIASAGYRLLKFDVNYREAKAQAPDD 377


>gi|254561252|ref|YP_003068347.1| permease [Methylobacterium extorquens DM4]
 gi|254268530|emb|CAX24487.1| putative permease (PerM family) [Methylobacterium extorquens DM4]
          Length = 370

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 114/350 (32%), Gaps = 10/350 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+   I+ +++  LY L+    P ++ L + +   P+      +         ++   
Sbjct: 4   RAIIGLSILAVVVFLLYELREVMLPFVAGLALAYLLDPLADRLE-RLGLGRLAATLLILA 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  F+V L+ +      ++  LV+ +         +         G     +    + 
Sbjct: 63  GFVVGFVVLLIIVVPLAAGQIASLVNSLPTMVGRLQSILVE----RAGPLLQRIGGTEVV 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +             +         +     ++   +  F+   D   +   L
Sbjct: 119 NELQSSVGTLVGQGGAWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIAAL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D           ++++  +   +     G +++ +  G       +L G+   V +G+I+
Sbjct: 179 DGWVPPRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMIS 238

Query: 249 AIMAMIPGGAPISFT-----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  IP    ++          +     G+  +         +  F+    + P LVG 
Sbjct: 239 GFLTFIPYVGTLTGFLLSVGVALVQWWPSGDWLHIGLTVGVFLVGQFLEGNVISPKLVGD 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +   F L+      G LGL +   + A I VI +  I    E+K
Sbjct: 299 SVGLHPVWLMFALLAFGSLFGFLGLLLAVPVAASIGVIVRFGIERYLESK 348


>gi|241761186|ref|ZP_04759275.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|241374805|gb|EER64266.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
          Length = 352

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 4/337 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIAT 67
                    II + L+ ++ F+  ++ +++I    WP++                  +AT
Sbjct: 8   TFRFIFFAGIIGLGLWTIRHFWPALIWSIVIAIAFWPLWLKLKESMGSKHEKILAPALAT 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +++    I+PLLF  +  M + +  +             P WL  IP   +   L  K  
Sbjct: 68  LAIGVTLILPLLFFAFEIMNDFQAAIHFFQDLKNQDTAPPDWLGRIPF--FGGNLVNKWH 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    S+  L       +   +  FGM       +  F +++LFF +R G  + + 
Sbjct: 126 QFFAPSSDGSQISLHQLLNGNVINHSRAFGMNVARRITTFFFTLMSLFFLFRSGSELQKM 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++   L     ++ +  V   +R T  G+ ++ +GEG++LG  Y   G P  V  G +
Sbjct: 186 FLNVSRRLMGPDMERFAHQVVLSVRGTLDGLVLVGLGEGVLLGIIYVFTGTPHAVMFGGM 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           TAI A+IP  AP+ F  V+  L  +G+I  A  +   G + L I D  +RP L+GG  +L
Sbjct: 246 TAIAAIIPFCAPVMFCIVAAILASQGHIGAAITVVALGMLILMIADHVVRPILIGGATRL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           PFL    G++GG+ T GLLGLF+GP LMA++ +IW++
Sbjct: 306 PFLWVLIGILGGIETFGLLGLFLGPALMAVLIMIWRD 342


>gi|269926458|ref|YP_003323081.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790118|gb|ACZ42259.1| protein of unknown function UPF0118 [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 438

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 116/351 (33%), Gaps = 19/351 (5%)

Query: 1   MRETMLNPQG--IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           MRE     +   I  W+ + +IL  L+       P + A++  +   P+ S    +    
Sbjct: 1   MREIRFTKRAKEITIWISIAVILYFLHSTAHLLTPFIWAIVATYIFHPLVSFLSRESGVP 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++  ++        L+ +      +   L ++V         +      +     
Sbjct: 61  RAIWIILLYIAAFSAVAWSLINVVPIIRDQSLALANQVPYILNQIEGIINRNQMLREWGI 120

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           + +L                  L  N  D+  R A     + +D  +     ++A FF  
Sbjct: 121 SVDL---------KQLESQVVALSDNFADYARRMAVPILTVVIDKAVKFFIFLVATFFLL 171

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                I   L       +    + + R +   + +      I+     +          V
Sbjct: 172 LHADHIKSSLLEFTPAPYRHEIENLLRRINDTLGAYLRSQLILLAIMTIATWIFLSAIHV 231

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYL--------LIKGNIFNATCLFLWGAIELF 290
              + LGV+T  + +IP   P +   +++ +            N   A  + L   I   
Sbjct: 232 QYALLLGVLTGFLELIPIIGPYTAGGIAVSVALFQSNPPFGWSNFTLAAVVALGYFILRQ 291

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + D  + PFL+G  + L  +   F ++ G    G+LGL I   + +++ +I
Sbjct: 292 LEDNLVIPFLIGRVVHLNPIIVIFFIMAGASYGGILGLLIAVPIASVLRII 342


>gi|313903596|ref|ZP_07836986.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466149|gb|EFR61673.1| protein of unknown function UPF0118 [Thermaerobacter subterraneus
           DSM 13965]
          Length = 458

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 102/319 (31%), Gaps = 2/319 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +    ++++    L         +  A ++ F   P  S         +    ++   
Sbjct: 32  NILAGAGVLWLAWWVLSHFGRTLTLLGLAGVLAFLLEPAVSFLERGMRSRALAALLLYLA 91

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V  L +  +         + +EL   V    Q        L      +           
Sbjct: 92  FVALLALGVVYLAGP-IKEQAQELFWSVPRYRQQVAEAVPVLQKYMELLREFLARYGVSV 150

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            PQ L       +  +  + I    +           + + +++   +   DG  +++Q+
Sbjct: 151 EPQDLAGQFLQRVAGS-TNRILAGLTAVVTGIGTTLANAVLVLVISIYLVVDGSGLNRQM 209

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +    ++   +  +V      G  ++ +  G+V+G    L G+P    LGVI 
Sbjct: 210 LGYLPARYRRPVRRAQAVALRVFGGYLRGQLLLGLIIGVVVGIGLSLLGIPYPALLGVIA 269

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +M ++P    +     +I + +         + L+  +   +    L P + G  + L 
Sbjct: 270 GVMELLPIVGAVLGAIPAILVALFQPWPAVLYVTLFFIVVQQVEGNLLVPRITGQAVGLH 329

Query: 309 FLPTFFGLVGGVRTMGLLG 327
            L T   L+ G    G+LG
Sbjct: 330 PLATLLALLAGYEVAGILG 348


>gi|170757809|ref|YP_001780772.1| putative transporter [Clostridium botulinum B1 str. Okra]
 gi|169123021|gb|ACA46857.1| putative transporter [Clostridium botulinum B1 str. Okra]
          Length = 367

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 107/330 (32%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +  +    +P + A II +   P+   F  + +       +I  V  + + ++ L 
Sbjct: 36  VFSGIGKVFKILSPFIIAFIIAYILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLS 95

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + ++   +      G  +   L      +  +   +          I    
Sbjct: 96  MIVPKVFQSIMDIFQNIPYYTNKGYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKVA 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              + G++ I      F    ++    +I  I  L    +  ++  + +  +    +   
Sbjct: 156 SFTSVGLNTILSQTISFTTFMVNLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEK 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  R V  +I+       + ++  GL+      +   P  + + +I  +  MIP   P
Sbjct: 216 IIEFFRTVNSMIKLYIGIKALDSLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGP 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ + +      A  + ++  +        L P LVG  + L       G+  G
Sbjct: 276 FIGMIPAVVINLFYVPVKALWVLIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               G+ G+ +    MA+I +   +     
Sbjct: 336 GSLFGVWGMLLASPAMAVIKIYTTKLAEKY 365


>gi|168240872|ref|ZP_02665804.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205339094|gb|EDZ25858.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 395

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|53716952|ref|YP_106010.1| hypothetical protein BMAA1401 [Burkholderia mallei ATCC 23344]
 gi|67643334|ref|ZP_00442081.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121597068|ref|YP_990127.1| hypothetical protein BMASAVP1_0518 [Burkholderia mallei SAVP1]
 gi|124383193|ref|YP_001023956.1| hypothetical protein BMA10229_0130 [Burkholderia mallei NCTC 10229]
 gi|126446549|ref|YP_001078668.1| hypothetical protein BMA10247_A1484 [Burkholderia mallei NCTC
           10247]
 gi|167001472|ref|ZP_02267269.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254174598|ref|ZP_04881260.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|254200862|ref|ZP_04907227.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254204829|ref|ZP_04911182.1| putative membrane protein [Burkholderia mallei JHU]
 gi|254356602|ref|ZP_04972877.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|52422922|gb|AAU46492.1| putative membrane protein [Burkholderia mallei ATCC 23344]
 gi|121224866|gb|ABM48397.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|124291213|gb|ABN00483.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126239403|gb|ABO02515.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|147748474|gb|EDK55549.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147754415|gb|EDK61479.1| putative membrane protein [Burkholderia mallei JHU]
 gi|148025629|gb|EDK83752.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|160695644|gb|EDP85614.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|238524656|gb|EEP88088.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|243062780|gb|EES44966.1| putative membrane protein [Burkholderia mallei PRL-20]
          Length = 356

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 156/324 (48%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A + T +V  L +VP+    
Sbjct: 35  WVIRDFMPAIAWACVVAIALWPALRRIDALPALRGRATLVAAVLTSAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL+  +    Q GIP P  LS +P G   +  W        +  +   T +K
Sbjct: 95  VEAVDQSHELLGWLHRVEQTGIPEPDVLSHLPFGSQQASAWWLA---NLAKPLHPATAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG       +   FM++ LF  ++ G  +S  L +     F      
Sbjct: 152 GVDGASVVTFGRHFGSRLAHAAVLFGFMLVTLFVIFQAGPRLSGSLLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TAI AM+P  AP+ F
Sbjct: 212 LLQRMAAAVYGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAIAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +G++ +F  +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 GGAALWLFVQGALGWAIGLAAFGSVVVFAAEHFVRPVLIGNSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|149189962|ref|ZP_01868241.1| hypothetical protein VSAK1_01632 [Vibrio shilonii AK1]
 gi|148836277|gb|EDL53235.1| hypothetical protein VSAK1_01632 [Vibrio shilonii AK1]
          Length = 378

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 129/348 (37%), Gaps = 5/348 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +++ ++  +   +K F  PVL   II     P+     S         A +
Sbjct: 17  MVESAIRIGLLVILLTFTYDIIKPFIIPVLWGSIIAVALLPLTKKLESSLGGKRGLAATL 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            ++  + L ++P + +       +      +             ++DIP           
Sbjct: 77  VSLIGISLLVIPFVMVSGSIYEGVAHTTEVIQSGEIKIPGPTSKVADIPVIGDKLYSIWN 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I          +  +           + + +S+         F      IS
Sbjct: 137 LFATNMEKAIQQFLPEIKGFLGTVASILGGALTSLIMFIISLAIAGG----FMAHAEKIS 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L+++         ++ + ++   IRS  LG+  +A  +  ++G+A ++  VP+   L 
Sbjct: 193 GALETVAVRAVGKKAEQWANLMAATIRSVLLGVVGVAFIQAAIIGAAMFVFKVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + T I+ +    A +    V  Y+   G+  + T   +W      + D  L+P L+G  +
Sbjct: 253 LATLILCIAQLPALLIVAPVIFYVYSTGDGTSTTLFTIWALAG-GLSDNILKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +P      G +GG+   G++GLF+G +++A+   ++   I   ++ +
Sbjct: 312 DVPMPIILIGAIGGMLFAGIIGLFLGAIILAIWYELFLFWINYEEQTE 359


>gi|167747114|ref|ZP_02419241.1| hypothetical protein ANACAC_01827 [Anaerostipes caccae DSM 14662]
 gi|317471931|ref|ZP_07931265.1| hypothetical protein HMPREF1011_01614 [Anaerostipes sp. 3_2_56FAA]
 gi|167654074|gb|EDR98203.1| hypothetical protein ANACAC_01827 [Anaerostipes caccae DSM 14662]
 gi|316900597|gb|EFV22577.1| hypothetical protein HMPREF1011_01614 [Anaerostipes sp. 3_2_56FAA]
          Length = 379

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 109/340 (32%), Gaps = 6/340 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCLF 74
           IL +  +L     P +    + F        F +K      +       ++A + ++ + 
Sbjct: 31  ILKAFSYLVSVIFPFIIGGCMAFIINVPMRFFETKLFSKVKKGKRALSLILAILCIIGVL 90

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS-L 133
            +    +       +  L S +           + +SD P     + +      +  S  
Sbjct: 91  ALISFLILPELANTLYSLASSIPGFVNEIKDFLQNVSDNPLLTKQNLMKIDLDWNKISTE 150

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +       +N +       S      + + L  +F + AL    +      + L S  +
Sbjct: 151 LMGFFQTSASNILGSTVSVISSAVQTVVTFLLGTVFAVNALLKKEKLVLQTKKLLYSYLK 210

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +      I  +  +   S   G    A+  G ++  +  +  +P  + + +   + ++
Sbjct: 211 ESYADRIVYIGNMCNQAFSSFLSGQCTEAVILGTIIFISMNILRLPYAMLIAMFIGVTSL 270

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP       + +   L+   + F      +   +   I    + P +VG  + LP +   
Sbjct: 271 IPILGGFIGSTLGAILIFMVSPFKMVIFVIMFVVVQQIEGNLIYPHVVGNSVGLPAIWVL 330

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +  G    G+ G+FI     ++I  + + +       K
Sbjct: 331 VAVTVGGNLAGVAGMFISIPACSVIYALLRNAANERLRKK 370


>gi|21674815|ref|NP_662880.1| hypothetical protein CT2004 [Chlorobium tepidum TLS]
 gi|21648033|gb|AAM73222.1| membrane protein, putative [Chlorobium tepidum TLS]
          Length = 366

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 148/346 (42%), Gaps = 6/346 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +    + I  + L  ++ F   +L A I    ++P++S FI+      +  A +  
Sbjct: 7   NKIAVLVATLLISALFLTMIRQFLVTILLAGIFTGLAYPLFSRFITLTRGHRSLSASMTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +  +PLL +F   +L+   L S  +   +  +  P     +   +     + K +
Sbjct: 67  VIFFMMVFLPLLAVFTVVILQAVSLSSTAIPLIREQLRDPEGFLRMLSSL----PFYKDI 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L +     +  N    +    S      +   +  I     +FF  RDG  + ++
Sbjct: 123 ESYSDLILEKAAEILGNLGSSVLSSFSAITWTAIYDLVLFIIFWYTMFFLLRDGHELLER 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +      L  +  +++      V R++  G  IIA+ +G + G A+++AG+   V  G I
Sbjct: 183 IKYYLP-LNESDQRRLFDRFVSVTRASLKGSLIIAVIQGTLAGLAFYVAGINQAVFWGAI 241

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+++++P    PI +    I L + GN   A  LFL+ +I +  +D  LRP LVG    
Sbjct: 242 MAMLSLLPLIGSPIIWVPAVIILALSGNYAQAIGLFLFCSIIVGQIDNVLRPILVGRDTS 301

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +  L  FFG +GG+   GL G  IGPV+ AL   +W        E+
Sbjct: 302 MHELFIFFGTLGGIGMFGLPGFIIGPVVAALFVTVWDIYGETFNES 347


>gi|322374430|ref|ZP_08048944.1| membrane protein [Streptococcus sp. C300]
 gi|321279930|gb|EFX56969.1| membrane protein [Streptococcus sp. C300]
          Length = 369

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 108/337 (32%), Gaps = 6/337 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L      + + PI +    + + +     ++   +++   +V 
Sbjct: 29  AIITPFVTVVNTIMIPFLLGGFFYYITNPIVTFLEKRCKINRLIGVLVTLCALIGAIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+            +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLTSLIISSQNIYSRLQDLIIDLSMNPVFQNID------IQQTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG  +   L+        
Sbjct: 143 YVDILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKLLPMLERTVLKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   I     G+ I AI  G +    Y + G+   +   + + I  +IP  
Sbjct: 203 LNLSSLLTNLNTTIARYISGIAIDAIIIGCLAYIGYSVIGLKYALVFAIFSGIANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       +   +  +         +  I   I    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMVIANVFTDPHRMLIAVAYMLIIQQIDGNVLYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G++G+ +     ++   I K      + +KE
Sbjct: 323 LSSNIYGVIGMVVAVPTYSIFKEITKFLAKLYENHKE 359


>gi|123441475|ref|YP_001005461.1| hypothetical protein YE1133 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088436|emb|CAL11228.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 354

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 115/350 (32%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 69  AASLVLVVFGGIALLAVFVVAPTVWQQGNHLISDMPKMLNKFNAFAQTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVLEMVVVGIATYLVFFVMGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|17989151|ref|NP_541784.1| putative transmembrane protein [Brucella melitensis bv. 1 str. 16M]
 gi|256043359|ref|ZP_05446292.1| hypothetical protein Bmelb1R_02664 [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17985002|gb|AAL54048.1| putative transmembrane protein [Brucella melitensis bv. 1 str. 16M]
          Length = 352

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGITFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|187478630|ref|YP_786654.1| membrane protein [Bordetella avium 197N]
 gi|115423216|emb|CAJ49747.1| putative membrane protein [Bordetella avium 197N]
          Length = 374

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 143/346 (41%), Gaps = 4/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++ + + +  +  +I  + +  ++ L  F+  V    I+     P++     +      
Sbjct: 1   MQQRLQHSRSFIALLI-AVSIAFIWLLWPFYGAVFWGTILAVVFAPLHRRLARRLAPRGN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A I+ + V+ + I+PL+ +    + E   L  ++   +       + + +    M   
Sbjct: 60  LAAFISLLVVLLVAIIPLILITGSLIQEGAGLYQRMRSGSVDFGLYFQQVMNAMPPM-VH 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L  +             +        F+       G     + +S   M+  LFF  RD
Sbjct: 119 SLLARFDLTELGSVQAKLSNGAMQLSQFMATQLLNVGQDTAQFLVSFGVMLYLLFFLLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S +L      L   Y + + R    V+R+T  G   +A  +G + G  +W+ G+  
Sbjct: 179 GPILSSRLLLAL-PLEEEYKRHLFRKFTTVVRATVKGNIAVAAIQGALGGVIFWVLGIQG 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+ A ++++P     + +  V+IY L+ G I+    L L+G + + +VD  LRP 
Sbjct: 238 ALLWGVVMAFLSLLPAVGAGLIWLPVAIYFLVTGAIWQGVVLILFGMLVIGMVDNVLRPV 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   KLP        +GG+   GL G  IGP++ AL    W   
Sbjct: 298 LVGKDTKLPDYVILISTLGGMALFGLNGFVIGPLIAALFVACWDLF 343


>gi|37526639|ref|NP_929983.1| putative permease PerM [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|36786071|emb|CAE15123.1| Putative permease perM [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 359

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 116/349 (33%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I  ++I+      +YFL G   P+L A+++ +      +    K   S T 
Sbjct: 10  RRRFTDPQVIALFVILLAGFCIIYFLHGILTPLLVAIVLAYLLEWPTAKLE-KLGCSRTV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +    + ++ +L +      +   L+S +           + L      +    
Sbjct: 69  AVCIVLIIFSSISLLVILIVAPTVWQQGINLLSDIPNMLNRFNEYAQTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + +  FF  +D 
Sbjct: 125 ----VDAGIIDMMAENLRSKISIAGESVVKFSVASLIGLLTLAIYLILVPLMAFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + Q L  +          ++ R + + I +   G     +  G+   + +   G+   
Sbjct: 181 NQMLQALQRVLP-RNRILAGQVWREMNQQITNYIRGKVTEMVIVGICTYAVFAFLGLDYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   +   L   G   +   L +   +   +    L P 
Sbjct: 240 LLLSVLVGLSVLIPYVGALIVTIPVVLVALFQWGVGTDFWTLIIAYLVVQGLDGNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     ++      G  G+F    L  LI  + +     
Sbjct: 300 LFSEAVNLHPLVIILSVITFGGLWGFWGVFFAIPLATLIKAVIQAWPEE 348


>gi|262274963|ref|ZP_06052774.1| putative permease [Grimontia hollisae CIP 101886]
 gi|262221526|gb|EEY72840.1| putative permease [Grimontia hollisae CIP 101886]
          Length = 360

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 128/335 (38%), Gaps = 2/335 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  +   ++ A I+    +P++     K        A ++ + +  + I+P++F+    
Sbjct: 27  LIAPYIGSIVLAFIVSLLFFPLHDRIEQKLPSHPNVAAALSCILLTVMIIIPMIFVAAAI 86

Query: 86  MLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           + +     +        G          +   +   + W    S      +       + 
Sbjct: 87  LGQGVTFFTGAYEWLTQGGAKAILDAPWVKSVLALVDKWLPTESINPQELVAKAASTVSA 146

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +   +S+         ++ + M+  LFF  RD   I   L  +   L  +    + 
Sbjct: 147 LSSQMIGMSSKILGDVTGVFVNFLLMLFVLFFLLRDHEKIINTLRHVSP-LSRSQEDTLL 205

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               KV +S  LG  + A+ +GLV G A WLAG        ++     +   G  + +  
Sbjct: 206 DEAEKVAKSAVLGSFLTALAQGLVGGFAMWLAGFAGLFWGTMMAFASFIPVVGTALIWVP 265

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + YL + G    A  L  WG I +  +D  LRP L+ G   +  L  FF L+GG+   G
Sbjct: 266 AATYLFLIGQWEWAAFLAGWGVIVVGSIDNLLRPLLMQGNSGMNTLLIFFSLIGGLHVYG 325

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+GL  GP++ +L  V+++          EK  ++
Sbjct: 326 LMGLIYGPIIFSLTLVLFRMYETEFHSFLEKQDNS 360


>gi|226943233|ref|YP_002798306.1| hypothetical protein Avin_11000 [Azotobacter vinelandii DJ]
 gi|226718160|gb|ACO77331.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 346

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/337 (18%), Positives = 135/337 (40%), Gaps = 3/337 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +  ++++ I +  ++ +  F+  +  A ++     P+               A++  + 
Sbjct: 9   RVFLFLLVLISVAFVWIILPFYGAIFWAAVLAILFHPLQIRLQRHLGNHPNLSALLTLIV 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + ++P+  +    + E   L +++         +   L         +++    L  
Sbjct: 69  CVVVAVLPITIVSMLLIQEGATLYNEIEAGRIDFAGMLEGLKAQLPEPLQAQMSRFGLDS 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+      +   G   +   A   G     + L    M+  LFFF RDG ++  ++ 
Sbjct: 129 RYDLRDRI-ANIAMQGSQLLATKAFNIGQNTFQFILGFFVMLYLLFFFLRDGTALVARIR 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L      ++ + +  ++++T  G  ++A+ +G + G  + L G+P  +  GV  A
Sbjct: 188 EAIP-LSEMKKSRLFQRITGMVQATIKGSLVVAVIQGSLGGVIFALLGIPRALLWGVAMA 246

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +P     + +  V+IY L+ G I  +  L   G   + +VD  +RP LV    +LP
Sbjct: 247 FLSFLPALGTGLVWAPVAIYFLLSGAILKSVLLTACGIFIIGLVDNIVRPILVSKDTRLP 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                   +GG+   GL G  IGPV+ AL    W   
Sbjct: 307 DYLVLVSTLGGLALFGLNGFVIGPVIAALFVSTWTLF 343


>gi|269961961|ref|ZP_06176316.1| putative lipoprotein [Vibrio harveyi 1DA3]
 gi|269833284|gb|EEZ87388.1| putative lipoprotein [Vibrio harveyi 1DA3]
          Length = 409

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/332 (20%), Positives = 133/332 (40%), Gaps = 2/332 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            +   ++ A II    +PI+  F SK       +++++ V +  + ++PLLF+F   + +
Sbjct: 79  PYVNSIVMAFIISLLMFPIHEWFESKMPNHKNLVSLLSCVVLTFIIVIPLLFVFAAIVQQ 138

Query: 89  MKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                        +G I        +  G+     +                   T+   
Sbjct: 139 GSVFSQNTYKWVTNGGIQDIFQHPWVVKGLALVNEYLPFDKIEPQAIAEKIGQFATSFGS 198

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   +++      ++ +    M+  LFF  RD   I   +  +   L  +   KI   +
Sbjct: 199 NLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHDKIISAMRHILP-LSRSQEDKILTEI 257

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V +S  +G  + AI +G   G   WLAG P      ++     +   G  + +   + 
Sbjct: 258 EQVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPGLFWGTMMGFASFIPVVGTALIWIPAAA 317

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL + G+   A  L +W  + +  +D  LRP L+ G   +  L  FF L+GG+   GL+G
Sbjct: 318 YLFLTGDTTWAIFLTVWSVVVVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGLHLFGLIG 377

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L  GP++ A+  V++       K+   +  ++
Sbjct: 378 LIYGPLIFAVTMVLFNIYEEEFKDFLNQQDNS 409


>gi|184155884|ref|YP_001844224.1| hypothetical protein LAF_1408 [Lactobacillus fermentum IFO 3956]
 gi|183227228|dbj|BAG27744.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 369

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 122/346 (35%), Gaps = 10/346 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 30  FVFTPLLVFVSVVITPLVISLFLYYMLNPLFRLLMKIRIYKWHMKRGIASLVVVIGLVLI 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  L    + E+ +++  +  A +    + + +S+ P  +        HLS     
Sbjct: 90  VVGGISALIPSVLNELNQVIHWLPQAAKESQKMIQEISEHPWVLKL------HLSTYYGQ 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                +      +  +   A           +  I + + LF+ ++DG  +   +  L  
Sbjct: 144 INDQVSKYVRQIVTGLTSSAGSIIGTITSTVIVAITVPVMLFYMFKDGNRLVPSVQKLFP 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + + + S   G  I  +   +     Y + G P  V LGV+  I  M
Sbjct: 204 ENSRDEVGELLRKMSQTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVVLGVVAGIANM 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 264 IPYVGPYIGITPSLMVSIAVAPEKIVWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L+      G+ G+ +     A++  I    I      K +  +N
Sbjct: 324 MLLLAAGNIAGIPGMILCIPCYAVVKTIVTYLISIYHLRKREGDNN 369


>gi|330994022|ref|ZP_08317952.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758968|gb|EGG75482.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 399

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 6/328 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA--TVSVMCLFIVPLLFLF 82
           Y ++GF   ++   I    SWP+Y+    +    +    +    T+++  +F+ PL    
Sbjct: 74  YTVRGFLPSLIWGCIFAIASWPLYARARQRWPSRAHQAMLPVAFTLAIALIFLGPLALFG 133

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E + ++  +  A   GIPVP W+S +P G    E W    +            L 
Sbjct: 134 LEAGREAEGVLRLLNDARHSGIPVPPWISRLPYGQQTIETWW---NDHLKDPADISALLG 190

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +  I    +   + G   L   L  IF I+ LFF  +DG ++ +Q  ++    F    ++
Sbjct: 191 SMNIGQGMKVTQQLGSQVLHRGLLFIFAILTLFFLLKDGDAVIRQSLNVSRRAFGKRGER 250

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI-S 261
           I+  +   +  +  G+ ++ IGEG+++G AY +AG P     GVITAI AMIP  A I  
Sbjct: 251 IALQMIASVHGSVSGLVLVGIGEGMLMGLAYLVAGAPHPFLFGVITAIAAMIPFCALIAI 310

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                + L+  G +  A  + L+G   +F+ D  +RP L+GG  +LPFL    G++GG  
Sbjct: 311 GAVALLLLVNTGAVLTAVAIVLFGLAVIFLADHLVRPALIGGTTQLPFLWVLMGILGGAE 370

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +  LLGLF+GP +MA++ ++W     A 
Sbjct: 371 SWSLLGLFVGPAIMAVLHMLWLNWSRAR 398


>gi|229175064|ref|ZP_04302582.1| hypothetical protein bcere0006_41460 [Bacillus cereus MM3]
 gi|228608432|gb|EEK65736.1| hypothetical protein bcere0006_41460 [Bacillus cereus MM3]
          Length = 361

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFDGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQSLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEI 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVI 349


>gi|322376424|ref|ZP_08050917.1| membrane protein [Streptococcus sp. M334]
 gi|321282231|gb|EFX59238.1| membrane protein [Streptococcus sp. M334]
          Length = 369

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 109/335 (32%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           II   +        P L    + + + P  S      + +     ++   +++   ++ +
Sbjct: 30  IITPFVSVANTIMIPFLLGSFLYYLTNPFVSFLQKYFKINRIIGILLTLCALVWGLVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L++           +   LS  P            +        LS 
Sbjct: 90  VYLLPILVNQLTSLIATSQTIYSRLQDLIVDLSTYPAFQNLD------IQANIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +               L II   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVTNSVGSILSALFSTVLIIIMTPVFLVYFLLDGHKFLPMLERTVLKRDKL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G+ I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVAIDAIIIGCLTFIGYSVIGLKYALVFAIFSGLANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   +  +        ++  I   +    L P +VGG +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANVFTDPHRMLIAVVYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +     +++  I K      + +K
Sbjct: 324 SSNIYGVIGMIVAVPTYSILKEISKFLSRLYENHK 358


>gi|194471851|ref|ZP_03077835.1| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194734852|ref|YP_002115559.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197263083|ref|ZP_03163157.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197301037|ref|ZP_02663257.2| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|198245669|ref|YP_002216562.1| permease PerM [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|204929513|ref|ZP_03220587.1| permease PerM [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205357726|ref|ZP_02572897.2| permease PerM [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205358514|ref|ZP_02657100.2| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205359481|ref|ZP_02829754.2| permease PerM [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194458215|gb|EDX47054.1| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194710354|gb|ACF89575.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197241338|gb|EDY23958.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197288904|gb|EDY28277.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|197940185|gb|ACH77518.1| permease PerM [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|204321232|gb|EDZ06432.1| permease PerM [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205329915|gb|EDZ16679.1| permease PerM [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205333537|gb|EDZ20301.1| permease PerM [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205344763|gb|EDZ31527.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|261247691|emb|CBG25518.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
          Length = 362

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 17  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 76  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 135

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 136 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 187

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 188 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 246

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 247 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 307 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 355


>gi|182624155|ref|ZP_02951942.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|177910771|gb|EDT73131.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 391

 Score =  127 bits (318), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 104/336 (30%), Gaps = 16/336 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------SSTFLAVIA 66
           +   L ++     P++  + I F        F  K                       + 
Sbjct: 31  VFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVT 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      +LF+       + +L   +    +        +++              
Sbjct: 91  IIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEV---NMNNYADSTVLLSKVWDQ 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +     + + T L      ++           +D+CL+ +  I  L    +    I +
Sbjct: 148 VMNTWQEILKTVTHLFGGIASYLVGLTVDVTTAIIDFCLAFVLAIYMLSSKEKLICQIKK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           +I +   +V     +G    A+  G +      +  +P    + V
Sbjct: 208 VMYAYIRGDIADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    ++IP       T  S +L+   N   A    ++      +    + P +VGG + 
Sbjct: 268 LVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 328 LSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|292492672|ref|YP_003528111.1| hypothetical protein Nhal_2648 [Nitrosococcus halophilus Nc4]
 gi|291581267|gb|ADE15724.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 370

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 115/357 (32%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ     +++ +  V++  +    APVL++L+I +    I       +      
Sbjct: 9   QRHFADPQVAGLAILLVVGFVTVVLMGRMLAPVLASLVIAYLLEGIVGYMERWR-CPRWL 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  V+ M      +  L      ++ +   ++      G  +   L +    +++ E
Sbjct: 68  AVTLVFVTFMAALFSVIFGLLPLLSQQLTQFFQQLPTMIARGQELLLSLPEHYPNLFSEE 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +S  +S                +   +    M  +   + ++ M + +FFF +D 
Sbjct: 128 QVYDLMSAIRSELAQ--------LGQKVLSLSLASVMGIMTLGVYLVIMPLLVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                 ++   V   I +   G  +  +   +V    + L G+   
Sbjct: 180 VRLIGWFKQYLPRE-RKLAAQVWHDVDFQIGNYVRGKFLEILIVWMVSFITFSLMGLQFS 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    ++ T    ++      F+A    L    AI   +    L P 
Sbjct: 239 MLLSVLVGLSVIIPYIGAVTATMPIAFVAYFQWGFSAEFAYLLGAYAIIQALDGNVLVPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  + K         +   
Sbjct: 299 LFAEVVDLHPVAIIVAILVFGGFWGFWGIFFAIPLATLVQAVLKAWPDLPPSEEPAP 355


>gi|257867397|ref|ZP_05647050.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257801453|gb|EEV30383.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
          Length = 418

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 106/337 (31%), Gaps = 5/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+       L     P L  LI+ +   P+     +K +   +       + ++ L +
Sbjct: 64  ISFLFTPFSAILTAIIPPFLFGLILYYLFNPVVDKLETK-KIPRSASIAGIYLLILLLIV 122

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L+     +  +L++ +               +           T  L +  S  +
Sbjct: 123 FAGFQLYPILEQQTTDLINSLPSLVSDFEKNATAFLENTPFQDEMAQITDTLQNITSNIM 182

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G   +    S    +F+      I       F  R+       + SL    
Sbjct: 183 SFIGDYWQTGAAGLSSLFSTISTLFIALFTGPIIAF----FLLRNPNKFYFSVLSLVPPR 238

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   + +I +I    + +   G  I ++  G +    + L G+     L +   ++ +IP
Sbjct: 239 FRKDFNEIVKISDLQVGAFLKGQIISSLILGAIYWVVFLLIGLEYASILAIAAGLLCIIP 298

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P       +++  + +        +       +    + P ++G  +K+  +     
Sbjct: 299 YIGPFIVFFPGLFIAAQDSTGMLVKFLIAWFAVQLLHGDLVVPRVMGDRLKIHPITILVV 358

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+     MG++G+  G  +  L+ V+        K+ 
Sbjct: 359 LLVMGDLMGIVGVIFGIPIYCLLKVLVVYVFRKFKQR 395


>gi|153940261|ref|YP_001390495.1| putative transporter [Clostridium botulinum F str. Langeland]
 gi|152936157|gb|ABS41655.1| putative transporter [Clostridium botulinum F str. Langeland]
 gi|295318576|gb|ADF98953.1| putative transporter [Clostridium botulinum F str. 230613]
          Length = 367

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 107/330 (32%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +  +    +P + A II +   P+   F  + +       +I  V  + + ++ L 
Sbjct: 36  VFSGIGKVFKILSPFIIAFIIAYILNPLVKFFERRFKIKRGLSILICYVITLGIVVLVLS 95

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + ++   +      G  +   L      +  +   +          I    
Sbjct: 96  MIVPKVFQSIMDIFQNIPYYTNKGYEMVNDLLVNNKELSNAINSSNVFKGNYKDLIDKIA 155

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              + G++ I      F    ++    +I  I  L    +  ++  + +  +    +   
Sbjct: 156 SFTSVGLNTILSQTISFTTFMVNLVFGLIIAIYVLNDREKFTYNSKRIVFLIFREKYGEK 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  R V  +I+       + ++  GL+      +   P  + + +I  +  MIP   P
Sbjct: 216 IIEFFRTVNSMIKLYIGIKALDSLIIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGP 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ + +      A  + ++  +        L P LVG  + L       G+  G
Sbjct: 276 FIGMIPAVVINLFYVPVKALWVLIFLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               G+ G+ +    MA+I +   +     
Sbjct: 336 GSLFGVWGMLLASPAMAVIKIYTTKLAEKY 365


>gi|229192602|ref|ZP_04319563.1| hypothetical protein bcere0002_42530 [Bacillus cereus ATCC 10876]
 gi|228590909|gb|EEK48767.1| hypothetical protein bcere0002_42530 [Bacillus cereus ATCC 10876]
          Length = 361

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 109/319 (34%), Gaps = 11/319 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G++GL I   ++A+I  +
Sbjct: 330 AGIVGLLISVPILAVIRTV 348


>gi|170739370|ref|YP_001768025.1| hypothetical protein M446_1060 [Methylobacterium sp. 4-46]
 gi|168193644|gb|ACA15591.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 645

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 94/330 (28%), Gaps = 13/330 (3%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +  F P++ A+++ F   P+ +     +     S   AV+  + V+      +       
Sbjct: 43  REVFIPLVLAILLSFVLAPVVNLLRRLRLGRVPSVIAAVLLALGVILAIGGVIGLQVADL 102

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +    S V              ++     +  ++              +    +   
Sbjct: 103 AKNIPAYQSTVQRKVSTLQEGVLGRANDLIRRFNRQVSEVSSQAAAPDAAGAAAGAQAPR 162

Query: 146 IDFI---------PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
              +            A +     +     +  +++ + F       +  +L  L     
Sbjct: 163 AVLVKVQEPDTSPLVLAEKVLGPVVSPLTMVGIVLVVVIFILMQREDLRDRLIRLFGASD 222

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                         + + FL    +    G+++G   W  GVPS +  GV +A+M  +P 
Sbjct: 223 LHRTTMAMDDAAGRLGTFFLAQLGMNAAFGVIVGVGLWFIGVPSPILWGVFSALMRFVPY 282

Query: 257 GAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              +      V++   +      A        +   +  + + P L G    L       
Sbjct: 283 IGALISGVFPVALAAAVDPGWSMALWTAALFLVAEPVFGQVVEPLLYGHSTGLSPFSVIV 342

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +      G +GL +       + V+ + 
Sbjct: 343 STLFWGFLWGPIGLILATPFTVCLVVLGRH 372


>gi|332176654|gb|AEE12344.1| protein of unknown function UPF0118 [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 429

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/322 (18%), Positives = 115/322 (35%), Gaps = 19/322 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            + + VL AL I           + +K     + A + TV  +  F++PLL +    +  
Sbjct: 69  PYMSGVLGALTIYVLLRGQMKWLVERKRWGRNWAASLLTVEAIFFFLIPLLGIVLMLIDL 128

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
                     +        + +       +  ELW+                       F
Sbjct: 129 FSAFD---PESLNVLTTQAQDVVKQVEERFGIELWSNEN--------------IQKLTSF 171

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                         + L+   ++  L+F  R        ++ L         K +S    
Sbjct: 172 STSLVKGLLQGMSSFFLNAFIILFLLYFMLRGYDQFEAAVEELLP-FTECNKKTVSNETI 230

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSI 267
            +++S  +G+ ++AI +G+     Y + GV + +   V+T    +IP     + +  +++
Sbjct: 231 SIVKSNAIGIPLLAIVQGVFAYIGYLIFGVDNALLFAVLTTFTTIIPVLGTMLVWIPIAV 290

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + I G+  NA  L L+G I +  VD   R  L      +  L T FG+  G+   G  G
Sbjct: 291 VMGINGDWLNAILLALYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFWG 350

Query: 328 LFIGPVLMALIAVIWKESIMAI 349
           +  GP++++LI +         
Sbjct: 351 VIFGPLILSLIVLFINLYRHDF 372


>gi|310829305|ref|YP_003961662.1| possible permease [Eubacterium limosum KIST612]
 gi|308741039|gb|ADO38699.1| possible permease [Eubacterium limosum KIST612]
          Length = 355

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 118/352 (33%), Gaps = 8/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++ +L    I+  + +   +       G F P   A+I+ +   P+   F  +       
Sbjct: 7   KKRILIVNTIVVLICILFAIFLWPTFSGMFMPFFIAIILAYLLNPLVKIFERR-GFGRGL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   V V+ +     +      +  + ++V+ +    Q        +S+         
Sbjct: 66  SVLFVCVIVLLILFGVFMSFVPSLISNIAQMVTNIPSMLQDLQNYSGQISEFI------- 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    +   +             + +  S   +      ++II + +   F   D 
Sbjct: 119 QKYNDSDMSKYFNLEQSLSQVAGMFGGMLQGLSNAIIANSGQLMNIIIVPLVTIFLLLDK 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              +Q L  L         KK+   +  VI     G  +++I  G++ G   +  G+P  
Sbjct: 179 ELFTQSLMYLVPIDARNQVKKMFYDIDMVIGGFIRGQGLMSIIAGILTGVGAYFMGLPYA 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             +GVI  +  MIP   P     V   + +  +      + +W AI   +    L P L+
Sbjct: 239 PVIGVIAGVTTMIPYFGPAVGMVVICIMALLSSPIQMVYILIWMAIVQVVCGNLLAPALM 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G + L  +   F +       G LG+ +   +M  + V+ K  I     +K
Sbjct: 299 SGNVGLHPVIIIFSIFFFGAMFGGLGMILAVPIMGTVKVVMKYLIAGFASSK 350


>gi|146276452|ref|YP_001166611.1| hypothetical protein Rsph17025_0400 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554693|gb|ABP69306.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 357

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 104/329 (31%), Gaps = 14/329 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P +    I +   P+      +   S      + +V ++ + ++ +L +      
Sbjct: 27  GDVILPFIVGGAIAYFLDPVADRLE-RAGLSRVAATSLISVGMLLVVVLLVLAVIPTLAS 85

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  L+       +                          +      +LS          
Sbjct: 86  QLTALIDAAPTIFRQLHTFLLEHF----------PQLSDETSTMRQTLLSIGDTIKQRGG 135

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +           ++  + ++ + +  F+   D   +  ++DS          ++++  +
Sbjct: 136 ELANTVLISAYGVINALIFVVVVPVVSFYLLLDWDPMVAKIDSWLPRDHAPTLRRLASEI 195

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V+     G   + +  G     A    G+   + +G I   +  IP    +   A++I
Sbjct: 196 DEVLAGFVRGQISVCLVLGTFYAVALAAVGLQFGLVVGAIAGAITFIPYVGALIGGALAI 255

Query: 268 YLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            L      G+      +    A+  F+    + P LVGG + L  L   F L       G
Sbjct: 256 GLALFQFWGDWLAIGLVAGIFALGQFLEGNVITPRLVGGSVGLHPLWLLFALSAFGSIFG 315

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +G+ +   + A I V+ +  I     ++
Sbjct: 316 FVGMLVAVPVAAAIGVLARFGIRQYTGSR 344


>gi|238756097|ref|ZP_04617419.1| permease perM [Yersinia ruckeri ATCC 29473]
 gi|54208730|gb|AAV31125.1| putative permease [Yersinia ruckeri]
 gi|238705703|gb|EEP98098.1| permease perM [Yersinia ruckeri ATCC 29473]
          Length = 354

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 117/350 (33%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLVAIVLAYLLEWPTTRLQ-RMGCSRLW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +    + ++ +L +      +   LV+ +           + L      +    
Sbjct: 69  AASIVLILFGGIALLLILVVAPTAWQQGINLVADMPKMLNQFNAYAQTLPSRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     ++  D + +F+    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENMRGKLSSMGDSVVKFSLASIVGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+V    +++  +   
Sbjct: 181 DQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVMEMVIVGIVTYLVFFILDMRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   L +   +   +    L P 
Sbjct: 240 LLLSVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLIVAYLVVQALDGNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|118471020|ref|YP_884664.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
 gi|118172307|gb|ABK73203.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
          Length = 379

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/348 (10%), Positives = 103/348 (29%), Gaps = 14/348 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +  +L  +  L+  F PV  A ++     P       +          +  +
Sbjct: 24  RLLIIGGAIVALLWLIKRLEILFVPVALATMVAALLLPAVDFMDRR-GAPRGSAVALVLL 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L F+    +    +LV ++  +                  W  +       
Sbjct: 83  GGIAVVGGILTFVVTQFIQGAPDLVEQMTRSIDGVRN------------WLIDGPLHLSK 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +         + +   A        +     +  +  L F  + G +I   +
Sbjct: 131 EQIDSAGNTAIEALQRNQEKVTTGALSTAGTLTELLTGAVLTLFTLIFLLQGGRNIFAFV 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +   R     +        ++A+ + + +G+   + G+P  + L  + 
Sbjct: 191 TKAFPEDVRERVRDAGRAGFHSLIGYVRATFLVALVDAIGIGTGLAIMGIPLALPLASLV 250

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P     I+     +  L+   +  A            +    L+P ++G  + +
Sbjct: 251 FLGAFVPLVGAVIAGFLAVVVALLAKGLVYALITLGLIIAVQQLEGHVLQPLVMGRAVSI 310

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             L     + GG    G++G  +    +A +    +  +      +E+
Sbjct: 311 HPLAVVLAIAGGGVLAGIVGALLAVPAVAFLNSATRVLLARDPHAEEE 358


>gi|86606339|ref|YP_475102.1| hypothetical protein CYA_1683 [Synechococcus sp. JA-3-3Ab]
 gi|86554881|gb|ABC99839.1| putative membrane protein [Synechococcus sp. JA-3-3Ab]
          Length = 378

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/362 (12%), Positives = 125/362 (34%), Gaps = 16/362 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M       + ++ W+++ I                  +L+A ++ F           +  
Sbjct: 1   MNRFSPLQRLLLTWILIVISGWLALQVGRLFGHLLTTILTAAVLAFLLNYPVQVL-RRYR 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S      +     + L  +  + +      ++ +L +++             +S     
Sbjct: 60  VSRGLAVTLVFALSVVLLALVGIAVVPILAKQVVQLGARIPEWVDTLQSWLDQISLWAA- 118

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                   ++++  Q+  + +         + I   +    +   +  + ++ +++   +
Sbjct: 119 -------ERNINLGQTELVNTLLNRLQASAEKIAGQSLDILLGTFNQVIDLVLVLVLALY 171

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
               G    Q L SL    +     +   +     ++  +   ++     L+L   +   
Sbjct: 172 MLLYGGQFWQGLLSLFPKPWGPRIGEALAL---SFQNFLISQLVLGFIMALMLVPIFGFL 228

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            VP  +  G++  ++ +IP          +  LL   +I+ +  + L   I   + D+ +
Sbjct: 229 RVPFGLLFGLLIGLLEVIPLVGGFIGIGAAAVLLAFQDIWLSLKVVLVSLIVQQVKDRVI 288

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P L+G  I L  +     L+ G +  G+LG+ +   L +++  +++ +  A    +E +
Sbjct: 289 APRLMGELIGLNPVWILIALLVGAQLGGILGVIVAIPLTSVVKSLYEIARSADLAAEEGL 348

Query: 357 SS 358
            S
Sbjct: 349 DS 350


>gi|296104116|ref|YP_003614262.1| hypothetical protein ECL_03779 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295058575|gb|ADF63313.1| hypothetical protein ECL_03779 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 354

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 107/347 (30%), Gaps = 12/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTARLEN-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVLFVGILLLMAFVVMPVAWQQGINLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRARIMTMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  I  G+     + + G+   
Sbjct: 181 DQMLNAVRRILP-RNRGLAGQVWEEMNQQITNYIRGKVLEMIVVGVATWIGFLIFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGLSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L    + L  L     +V      G  G+F    L  LI  +     
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWP 346


>gi|227513953|ref|ZP_03944002.1| possible permease [Lactobacillus fermentum ATCC 14931]
 gi|227087664|gb|EEI22976.1| possible permease [Lactobacillus fermentum ATCC 14931]
          Length = 369

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 10/336 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 30  FVFTPLLVFVSVVITPLIISLFLYYMLNPLFRLLMKIKVYKWHMKRGIASLVVVIGLVLI 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  L    + E+ +++  +  A +    + + +S+ P           HLS     
Sbjct: 90  VAGGISALIPSVLNELNQVIHWLPQAAKEIQKMIQEISEHPWVRKL------HLSTYYGQ 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                +      +  +   A           +  I + + LF+ ++DG  +   +  L  
Sbjct: 144 INDQVSKYVRQIVTGLTSSAGTIIGTITSTVIVAITVPVMLFYMFKDGNRLVPSVQKLFP 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + K + S   G  I  +   +     Y + G P  V LGV+  I  M
Sbjct: 204 ESSQDEVGELLRKMSKTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVVLGVVAGIANM 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 264 IPYVGPYIGITPSLMVSIAVAPEKIIWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             L+      G+ G+ +     A++  +    I   
Sbjct: 324 MLLLAAGNIAGIPGMILCIPCYAVVKTVVTYLISIY 359


>gi|220929940|ref|YP_002506849.1| hypothetical protein Ccel_2541 [Clostridium cellulolyticum H10]
 gi|220000268|gb|ACL76869.1| protein of unknown function UPF0118 [Clostridium cellulolyticum
           H10]
          Length = 392

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 111/330 (33%), Gaps = 6/330 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F I     F+     P+L   ++ +   PI      K      +  ++A V V+   I+ 
Sbjct: 36  FFIAPFQSFVYSIIFPILFGGLLYYILRPIVLMLE-KGRVPHIWAILLAFVIVLSALILL 94

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
             +       +  +    +    +        L       +         S   S     
Sbjct: 95  SSYTGSIIKSQFNDFAKSLPYLYESAENTINNLLKSNLLSYFDS-----SSFQTSDLTEK 149

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +         + +    F     +    II + + LF+F +DG      +         
Sbjct: 150 VSNFLQGAAKSVGKNTINFISAITNIGSVIIILPVILFYFLKDGHKFMPSIVRFVPSSQK 209

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +KI + +  V+ +   G  ++A   GL++   Y + G+   + L +   I  +IP  
Sbjct: 210 DNIRKILKDIDFVLSNYIAGQLLVAFFIGLLMYIGYLIIGLKYSLLLAIFAMITCIIPFF 269

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I L +  N F A  +F+   I   I +  + P ++   + +  L     L+
Sbjct: 270 GPWIGIIPAILLSLADNPFMAIKIFIVMIIVQQIDNNFISPQVMKKSMDIHPLTVILLLM 329

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G +   G +GL I   L + I +  K  I 
Sbjct: 330 GILPIFGFIGLIIVIPLYSAIKITIKNIIE 359


>gi|90419553|ref|ZP_01227463.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336490|gb|EAS50231.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 351

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 106/330 (32%), Gaps = 11/330 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++  +LY    F  PV+ AL+      P+      + +      A    V  +   
Sbjct: 4   IFFILLFGALYLTASFVLPVIIALLFALVMSPVVRFLRRRLKIWEPISAFFLVVGALVTM 63

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++    L       + +        +Q    V    + +       E      +      
Sbjct: 64  VLGFYMLSDPITNIVNDAPRYAAAVDQELRSVQERFARLEAAQQNVEQAAARNAPNDGQP 123

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                          P               S+ F ++ LFF    G    Q+L      
Sbjct: 124 DEVVVKN--------PGLLDNVTTAAPQIVASVGFSLVFLFFLLASGDLFYQKLVRAMPT 175

Query: 195 LF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           L        I+  + + +      +T+I +  GL +G+  W  G+P+ +  G +  ++  
Sbjct: 176 LSDKKRALNIAHEIERELSRYLFTITLINVTLGLTIGTLLWWVGMPTPIIFGALATLLNF 235

Query: 254 IPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    +    +     L   G++ NA    L       +  + + P +VG  +++    
Sbjct: 236 IPYIGALIGMFLVGVIALAEFGSLSNALAPVLVYLACTTVEGQLVTPMIVGRRLEMNAAA 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  +       G++G+F+   +M  + V+
Sbjct: 296 VFLSVAFWGWIWGVVGMFLAVPVMVALKVL 325


>gi|319404185|emb|CBI77778.1| permease protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 385

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/350 (11%), Positives = 109/350 (31%), Gaps = 9/350 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   +V ++ L     P ++ +++ +   PI   F            +I  
Sbjct: 29  KQIFFWLGTLIFFIVFMFILGSILFPFIAGIVLAYFLNPIVQIFEKIGIHRVFGTILITL 88

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++   +  ++ +        + + + + +            +      +      +  
Sbjct: 89  FIIIIFVVSLIILIPIISGQIQQFISNGLPIYVNRIQTFFVEHNFSWVRRYFDSDPNELH 148

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           ++ + L   S     ++ I  +     + G   ++     +   +  F+   D   + + 
Sbjct: 149 TNIKVLLGQS-----SDFITSLLNSLLKSGKSIVNIISLFVVTPVVTFYILLDWPHMVEV 203

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          + +   + + +     G   + +           + G+   + +G+ 
Sbjct: 204 VDSWIPRSHLTTVRSLFHEMDRAVAGFVRGQGTVCLILAGYYAIGLTITGLNFALLIGMF 263

Query: 248 TAIMAMIPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +++ IP    +        V+       N      + +   I  FI    L+P LVG 
Sbjct: 264 VGLISFIPYIGTMIGFILSIGVAWVQFYPDNWGWVIIVMIVFFIGQFIEGYILQPKLVGS 323

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +   F L       G  G+ +     A+I V+ +  +     ++
Sbjct: 324 SVGLHPVWLMFALFAFGSLFGFTGMLVAVPAAAIIGVLVRFVLHIYLNSQ 373


>gi|152979696|ref|YP_001345325.1| hypothetical protein Asuc_2044 [Actinobacillus succinogenes 130Z]
 gi|150841419|gb|ABR75390.1| protein of unknown function UPF0118 [Actinobacillus succinogenes
           130Z]
          Length = 354

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 101/348 (29%), Gaps = 11/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ +    I+    ++LYF  G  AP+L AL++ +      +   +K +     
Sbjct: 10  QRNFSDPQAMGLAAILLFGFIALYFFSGLIAPLLIALVLAYLLEIPINFLNAKFKIPRLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + L  V +  L    + +   L+S +             L +    +   +
Sbjct: 70  AITLILGGFIGLVAVIVFGLLPNLVGQTVNLLSDLPNMFNKLHEWVATLPEHYPELVDYQ 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L     S  +   +          +  I               +    + + +FF  +D 
Sbjct: 130 LIDSLFSSTREKILAFGESAVKFSLSSIVNLV--------SIGIYAFLVPLMMFFMLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++   +             ++   + + I +   G  +       V    +    +   
Sbjct: 182 QALLSGVTKFLP-KNRHLASQVWTEMQQQIANYIRGKLLEIAIVAAVTYVIFLFFQLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   I  +IP    +  T     +     G       +     I   +    L PF
Sbjct: 241 LLLAVAVGISVLIPYVGAVIVTIPVALVAFFQFGAQATFWYIMTAYIISQLLDGNLLVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  L     ++      G  G+F    L  L+  +      
Sbjct: 301 LFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPE 348


>gi|295097974|emb|CBK87064.1| Predicted permease [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 354

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 106/347 (30%), Gaps = 12/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +        S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTARLE-HIGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVLFVGILLLMSFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRARIMTMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + + G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWQEMNQQITNYIRGKVLEMIVVGVATWIGFVIFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L    + L  L     +V      G  G+F    L  LI  +     
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWP 346


>gi|238753651|ref|ZP_04615013.1| hypothetical protein yruck0001_13830 [Yersinia ruckeri ATCC 29473]
 gi|238708203|gb|EEQ00559.1| hypothetical protein yruck0001_13830 [Yersinia ruckeri ATCC 29473]
          Length = 367

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/357 (21%), Positives = 141/357 (39%), Gaps = 6/357 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L         I+ +I+   + ++ F      A ++   +WP+     +      +  
Sbjct: 8   RYDLPKLIFGVIFILTMIIACFWVVQPFIMGFAWAGMVVIATWPLLIKLQAVLWGRRSLA 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            +I T+ ++ LF++P+  L    +     L+          IP   WL  IP  G     
Sbjct: 68  VIIMTLLLVLLFVIPIALLVSSLVENSAPLIKSASSPANLQIPEAAWLKSIPMIGDKLYS 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L+    + I            +    A+  G     + L +  M++     Y  G
Sbjct: 128 SWHTLLAGGGKVLIAKVQPYVGETATWFVAQAAHIGR----FLLHLALMVLFSVLLYFRG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S++Q +      L          +  + IR+  LG+ + A+ +G++ G    +AG+P  
Sbjct: 184 ESVAQGIRHFAIRLADQRGDAAVVLAAQSIRAVALGVVVTALVQGILGGIGLAIAGIPYA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L V+  +  +   G  +      I+L   G+    T L +W  I   +    LRP L+
Sbjct: 244 MLLTVVMFVCCVAQLGPLLVLIPAVIWLYWSGDNTFGTLLLVWSCIVGTLDG-VLRPALI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP +    G++GG+ + G++GLFIGPV++A+   +    I    E +E I+ 
Sbjct: 303 RMGADLPMVLILSGVIGGLLSFGMIGLFIGPVVLAVSYRLIAAWIHEAPEPEENIAE 359


>gi|168214314|ref|ZP_02639939.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|170714173|gb|EDT26355.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
          Length = 391

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 103/336 (30%), Gaps = 16/336 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------SSTFLAVIA 66
           +   L ++     P++  + I F        F  K                       + 
Sbjct: 31  VFGGLGYITSLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRPLAITVT 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      +LF+       + +L   +    +        +++              
Sbjct: 91  IIVLVGAISAIILFVVPQLTSSVVKLTESIPTYLKSFEV---NMNNYADSTLLLSKVWDQ 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +     + + T L      ++           +D+ L+ +  I  L    +    I +
Sbjct: 148 VMNAWQEILKTVTHLFGGLASYLVGLTVDVTTAIIDFFLAFVLAIYMLSSKEKLICQIKK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           +I +   +V     +G    A+  G +      +  +P    + V
Sbjct: 208 VMYAYLRGDIADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    ++IP       T  S +L+   N   A    ++      +    + P +VGG + 
Sbjct: 268 LVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 328 LSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|90415986|ref|ZP_01223919.1| hypothetical protein GB2207_02097 [marine gamma proteobacterium
           HTCC2207]
 gi|90332360|gb|EAS47557.1| hypothetical protein GB2207_02097 [marine gamma proteobacterium
           HTCC2207]
          Length = 373

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 111/352 (31%), Gaps = 12/352 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                 + ++  +I+ + LV    L     P+ +ALI+ F    + ++ +          
Sbjct: 11  RYFGTEEALLLTIILIVSLVVFATLGAVLGPLFAALILSFLLQGVVNTLVRY-GVPRAMA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V   +  +  F+  ++ L      +   L+ ++         +   + +      + E 
Sbjct: 70  LVSTYLLFVAGFVSVIVGLIPIIGRQTSLLIGELPNMIAGLRDLAVAIPERYAEYVSPEQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +                      ++    F+       +   + ++ + + + F  +D  
Sbjct: 130 FQSITQRLSEE--------VGRLLEQALSFSISSFPGIIGVMIYLVLVPLLVMFMLKDKD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L +L      +  + I   +     +   G  I  +  GLV  + +   GV    
Sbjct: 182 QLLLFLSNLLPEE-RSVMRTIWNEMDMQFTNYVRGKAIEILIIGLVSYAVFLWLGVNYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  ++P       T   + +  +  G   +   LF    +  F+    L P L
Sbjct: 241 LLALLVGLSVLVPYIGATVVTIPVLLVGYMQWGFSNDFFWLFGAYGVIQFLDGNLLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               + L  +     ++      G  G+F    L  L+  ++       ++ 
Sbjct: 301 FSEVVNLHPVFIIVSVLLFGGIWGFWGVFFAIPLATLVKAVFNAWPRRAQQE 352


>gi|52081223|ref|YP_080014.1| hypothetical protein BL02034 [Bacillus licheniformis ATCC 14580]
 gi|52786604|ref|YP_092433.1| YrrI [Bacillus licheniformis ATCC 14580]
 gi|319644809|ref|ZP_07999042.1| YrrI protein [Bacillus sp. BT1B_CT2]
 gi|52004434|gb|AAU24376.1| conserved protein YrrI [Bacillus licheniformis ATCC 14580]
 gi|52349106|gb|AAU41740.1| YrrI [Bacillus licheniformis ATCC 14580]
 gi|317392618|gb|EFV73412.1| YrrI protein [Bacillus sp. BT1B_CT2]
          Length = 352

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 105/329 (31%), Gaps = 11/329 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               LK    P+  A+ I +   P+      +     T   ++                 
Sbjct: 35  VCVLLKSILIPLAIAVFITYLLLPVVEKIH-RAGVPRTLSILLIYFLFFAGLGYAFYKGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++ EL   + +       +   L     G                 ++       
Sbjct: 94  PILIKQLTELSEGIPVLAASYENMLDQLHHHTDG----------WPDGMHDRVDRFVNQT 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +        R      DY L    +   +F+  +D  ++ + +  L    + A   +
Sbjct: 144 EEFVASWVERTIRSIRFVFDYMLLAAIIPFLVFYMVKDIDTMKKAVWYLTPSSWRARGSE 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V   +     G   + +  GL    ++W   +P  + LG++     +IP   P+  
Sbjct: 204 FIRDVDDSLGDYIRGQLFVCLVIGLGASLSFWFFDLPYPLILGLVIGATNVIPYFGPVIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +      + +   I  FI    L P +VG  + +  +    GL+ G   
Sbjct: 264 AIPAVMVAAALSTRLVFVVIITILILQFIEGNILGPLVVGKSLHMHPVVIMLGLLAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G++G+ +   +MA+I V+    + A K 
Sbjct: 324 AGIIGMILAVPVMAVIKVMLVHFLAARKA 352


>gi|308271896|emb|CBX28504.1| hypothetical protein N47_G38280 [uncultured Desulfobacterium sp.]
          Length = 350

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 142/348 (40%), Gaps = 10/348 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  ++    ++ L+  + F   ++ +++      P++   +   ++ S   A+I+TV V
Sbjct: 10  LLSALLAGSFVLVLFIFQPFIYTLIFSVVFTVVFQPVHKYVLKVTKQRSGISALISTVFV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +VP++      + E ++L   +   +   I        +   ++     T      
Sbjct: 70  ITILLVPIILFGVQILNEAQQLYMSLAAGSTKKI--------VHETIYNLIEKTGRFFPA 121

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                         G+  +               ++    + +L++ ++DG  + +   +
Sbjct: 122 VKELKFDIDLYLKEGLGLLLSHIGGVFSNVAKLMINSFIFLTSLYYLFKDGHKLKETFLN 181

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   L     + IS  +   I S   G  +IA+ +G++  + +   G+P+ +  G +T +
Sbjct: 182 LSP-LPRNENELISNKLEGAINSVIKGNLVIALIQGVLSAAGFAFFGIPNAMFWGSVTTV 240

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A+IPG    +      I+L + G I     L +WGA  + I+D  L P LVG  +++  
Sbjct: 241 SALIPGVGTSLVLIPAIIFLFLTGKIAPGFGLLVWGAGAVGIIDNFLGPKLVGQRMQVHP 300

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +     ++GG+   G +G  +GP+ M+L    ++       +  E   
Sbjct: 301 MLILLSVLGGIVFFGPIGFLLGPLTMSLFFAFFEIYSAIRLDQTENTD 348


>gi|110803430|ref|YP_699190.1| hypothetical protein CPR_1880 [Clostridium perfringens SM101]
 gi|110683931|gb|ABG87301.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 372

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 99/329 (30%), Gaps = 3/329 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 P   A  + +   P+        +    F  +I+ + V+    + +  +     
Sbjct: 39  FLSVLTPFFWAFGVAYLINPLMMLIEKSFKLKRAFSLMISYILVIICVYILIAIIVPTIF 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             + EL S +                               +   S      + +  + +
Sbjct: 99  DSLSELFSNLSEYASSAESWINSTLASMNVPLDLNHLNTSATEFISKTSTLLSNIVGSLL 158

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
               +  S        + +SI  ++            I   + S         +      
Sbjct: 159 TQTIKITSSVVKFVFGFIISIYMLMDKETLIGGCKKIIIAVMPS---EKSSELFISFMAE 215

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              +     +G  I ++  G++      L G    V +  I  +  MIP   P      +
Sbjct: 216 AHNIFSRFIIGKIIDSLIIGVLCYIGLLLMGTQYAVLISFIVGLTNMIPYFGPFIGMIPA 275

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L +      A  + L+  I        L P ++G  + +  L   F +  G    G+L
Sbjct: 276 FLLTLIVQPSMAIWVLLFIFILQQFDGWYLGPKILGDQVGVSPLFIIFAVTVGGGIFGVL 335

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+F+   ++ALI +  ++ I    ENK++
Sbjct: 336 GMFLSVPIIALIKIYTEKLIEYRLENKKQ 364


>gi|160931224|ref|ZP_02078626.1| hypothetical protein CLOLEP_00061 [Clostridium leptum DSM 753]
 gi|156869779|gb|EDO63151.1| hypothetical protein CLOLEP_00061 [Clostridium leptum DSM 753]
          Length = 445

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/340 (11%), Positives = 115/340 (33%), Gaps = 16/340 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------------STFLAVIATVSVMCL 73
           + G  AP +  L++ F    +Y  F  K                       ++ + V   
Sbjct: 36  VSGLLAPFIYGLVLAFLVNGLYEFFRQKVFRRLGEKKNGKYIRQVRALSVTVSYLLVFLC 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  +    ++ + +L   +    +        ++D   GM  +  + K +    + 
Sbjct: 96  VTAMVWIVIPQLVVSISQLGKNIGGYAESAEKA---VTDFIAGMGLNAGFQKQIDLFWNQ 152

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T +       +  F   F    +++ + ++  +  L+        + + + ++  
Sbjct: 153 LGTQITNIAGQVAPKLIDFTMDFTTGVINWVIGLVVSVYMLYSKETLIRQVKKLVVAVLP 212

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++  +  ++     LG    ++   ++      +  +P  + + V+  +  +
Sbjct: 213 VKISDKVLEVGAVSNRIFVRYLLGRIYDSLIVLVLCFIGMSILQMPYALLISVVVGVTNI 272

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S  +L+  +        ++  +   +    + P +VG  + +  +   
Sbjct: 273 IPVFGPFLGGVPSALILLMVDPMKGLWFIIFIIVLQQVDGNIICPLIVGDSLGISGIWVL 332

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+  G    G+ G+ +G  ++A++ ++  E +    + K
Sbjct: 333 AGVTLGGGLGGVAGMVLGVPILAVLYLLLSEFVNKRLQKK 372


>gi|259501038|ref|ZP_05743940.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|302190513|ref|ZP_07266767.1| permease [Lactobacillus iners AB-1]
 gi|329920543|ref|ZP_08277275.1| putative membrane protein [Lactobacillus iners SPIN 1401G]
 gi|259167732|gb|EEW52227.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
 gi|328936219|gb|EGG32672.1| putative membrane protein [Lactobacillus iners SPIN 1401G]
          Length = 380

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPVLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIVNTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        ++ +    +   M+ +            LFF  +DG  I+  L S     
Sbjct: 163 NTGKASFNLFLENLFGAVNVISMLIVTLLT----APFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|295399322|ref|ZP_06809304.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110117|ref|YP_003988433.1| hypothetical protein GY4MC1_1010 [Geobacillus sp. Y4.1MC1]
 gi|294978788|gb|EFG54384.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215218|gb|ADP73822.1| protein of unknown function UPF0118 [Geobacillus sp. Y4.1MC1]
          Length = 353

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 98/330 (29%), Gaps = 11/330 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++       P + A  I +   P   S   K         ++                 
Sbjct: 35  VVHLFITILIPFVIAAFITYLLHPFVESIHEK-GIPRWMAILLIYFLFFGGIGYGFYKGI 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++K+L   +    +      + + +                     +I +     
Sbjct: 94  PLLIQQLKDLSESLPALTETYRNWTKQIHNETSAWPLE----------IHTRIETMIVQL 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                             ++  L  + +   +F+  +D   + + +  +    +      
Sbjct: 144 EQTAANALTAVINGVKGIVNSALLFLLIPFIVFYMLKDIEQLKKAVWYMTPKRWRQPGLA 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + + S   G   +    G V   A W+AG+   + LG I     +IP   PI  
Sbjct: 204 FLKDVDESLGSYIRGQLFVGFIIGTVAALALWIAGMDYPLLLGFIIGATNIIPYFGPIIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              S+ L    ++     +        F+    L P +VG  + +  L   F L  G   
Sbjct: 264 AVPSVILAATVSLKMVLVVSAIIFFLQFLEGNILSPLIVGKSLHMHPLVIMFALFAGGEI 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G+LGL +   L+A++ V         + +
Sbjct: 324 AGVLGLIVAVPLLAVLKVALLHWKEHSRAH 353


>gi|220921861|ref|YP_002497162.1| hypothetical protein Mnod_1869 [Methylobacterium nodulans ORS 2060]
 gi|219946467|gb|ACL56859.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 363

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 166/353 (47%), Gaps = 5/353 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-- 59
           RET  +       M++ +  + L+ L GF   ++ A+I+    WP+Y+    +       
Sbjct: 12  RETERSHAVARAAMVLGLASIGLWTLHGFLPALVWAVILTIALWPLYARLTRRFPGGRHN 71

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                + T+++  + +VPL F+      E  +++       + G PVP  ++ +P G   
Sbjct: 72  LLWPSLFTLALALVILVPLAFVAVQAAREAHDVLQFWRQIEEQGWPVPEAVAHLPFGAAQ 131

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W +      +        ++      +      FG       +   F ++ LFF +R
Sbjct: 132 VSAWWQENLGHPAGTSDLLHRIER---SSLIGLGGSFGKQIAHRVVLFGFTLLTLFFLFR 188

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG ++++Q       LF +  ++++R +   +  T  G+ ++ +GEG +LG  Y  AGVP
Sbjct: 189 DGPAVAEQGLVACRRLFGSRGERVARQMAASVHGTVDGLVLVGLGEGFLLGLVYHFAGVP 248

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             V LG  TA+ AMIP    + F   ++   + G++  A  + + G +  F+ D  +RP 
Sbjct: 249 HPVLLGAATALAAMIPFAVVVVFGLAAVLAAVNGSVAAAAVVVIAGMVVTFVADHFVRPA 308

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+GG  +LPFL    G++GGV   GLLGLF+GP +MA + ++W++      E 
Sbjct: 309 LIGGATRLPFLWVLLGILGGVENFGLLGLFLGPAVMAALVLLWRDFTAGEGET 361


>gi|261340788|ref|ZP_05968646.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
 gi|288317212|gb|EFC56150.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
          Length = 354

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/347 (12%), Positives = 106/347 (30%), Gaps = 12/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTARLEN-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVLFVGILLLMAFVVMPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRARIMTMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  I  G+     + + G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWEEMNQQITNYIRGKVLEMIVVGVATWIGFVIFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L    + L  L     +V      G  G+F    L  LI  +     
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWP 346


>gi|153835384|ref|ZP_01988051.1| putative permease [Vibrio harveyi HY01]
 gi|156975685|ref|YP_001446592.1| hypothetical protein VIBHAR_03420 [Vibrio harveyi ATCC BAA-1116]
 gi|148868086|gb|EDL67255.1| putative permease [Vibrio harveyi HY01]
 gi|156527279|gb|ABU72365.1| hypothetical protein VIBHAR_03420 [Vibrio harveyi ATCC BAA-1116]
          Length = 361

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 132/332 (39%), Gaps = 2/332 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            +   ++ A II    +PI+  F  K       +++++ V +  + ++PLLF+F   + +
Sbjct: 31  PYINSIVMAFIISLLMFPIHEWFERKLPNHKNLVSLLSCVVLTFIIVIPLLFVFAAIVQQ 90

Query: 89  MKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                        +G I        +  G+     +                   T+   
Sbjct: 91  GSVFSQNTYKWVSNGGIQDIFQHPWVVKGLALVNEYLPFDKIEPQAIAEKIGQFATSFGS 150

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   +++      ++ +    M+  LFF  RD   I   +  +   L  +   KI   +
Sbjct: 151 NLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHDKIISAMRHILP-LSRSQEDKILTEI 209

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V +S  +G  + AI +G   G   WLAG P      ++     +   G  + +   + 
Sbjct: 210 EQVSKSAVMGSFLTAIAQGFAGGIGMWLAGFPGLFWGTMMGFASFIPVVGTALIWIPAAA 269

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL + G+   A  L +W  + +  +D  LRP L+ G   +  L  FF L+GG+   GL+G
Sbjct: 270 YLFLTGDTTWAIFLTVWSVLVVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGLHLFGLIG 329

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L  GP++ A+  V++       K+   +  ++
Sbjct: 330 LIYGPLIFAVTMVLFNIYEEEFKDFLNQQDNS 361


>gi|114570113|ref|YP_756793.1| hypothetical protein Mmar10_1563 [Maricaulis maris MCS10]
 gi|114340575|gb|ABI65855.1| protein of unknown function UPF0118 [Maricaulis maris MCS10]
          Length = 398

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/347 (21%), Positives = 139/347 (40%), Gaps = 4/347 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +   +  +  + + I  V L+ ++ + A +  A +I       +     K  +     A
Sbjct: 6   KLELQRAFIAALALIISWVFLWMIRDYLAALFLAAVITLFLAKPHDWLSGKLGKRRGLAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +     +  F++P   L      +  ++   V    Q  +   R  ++   G+     +
Sbjct: 66  GLLVTGAVLAFVIPAAILLGLVAEQAIDVTGMVTPWVQSQVSEIR--TNGLDGLPDWLPF 123

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +   Q+        L  +    +          FL   L++  +I ALFFF   G  
Sbjct: 124 RDEMIEYQATLTAQIGNLAGSVGRMLVNSLRAGTGGFLVATLNLFILIYALFFFLMTGRD 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            ++   +L      A  + ++      IR+T  G  +IA+ +G + G   ++AGVP  + 
Sbjct: 184 AARSAVTLLPMTVEAR-ELLAERALSTIRATVKGSFLIALVQGGLTGVGLFVAGVPGAIF 242

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              I A++++IP   P + +   +I+L   G+   A  L  WGAI +   D  LRP LVG
Sbjct: 243 WAAIAALLSIIPMIGPPLIWAPAAIWLAATGHPVAAGGLAAWGAIVVSTSDNILRPVLVG 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              K+  L      +GG+   G +G+ IGPV+ AL   +W     + 
Sbjct: 303 KDAKMSDLMVLISTLGGLTLFGAVGIIIGPVIAALFTSVWFIFRESY 349


>gi|30248120|ref|NP_840190.1| hypothetical protein NE0089 [Nitrosomonas europaea ATCC 19718]
 gi|30180005|emb|CAD84000.1| Domain of unknown function DUF20 [Nitrosomonas europaea ATCC 19718]
          Length = 352

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 123/336 (36%), Gaps = 8/336 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + +      ++ ++   +Y L     P L A +I +   P+ +   ++ +   T  
Sbjct: 4   KYSPDSRLFWYLTVIGVVSALIYLLSPILTPFLLAAVIAYICNPLVTWLEAR-KIPRTLS 62

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   +  M +FI   L LF     E+  LV ++                IP       +
Sbjct: 63  TIFVMLMTMGIFIAMALILFPLFEKEVSRLVERIPSFLDLVKS-----QFIPWLEDNFNV 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +         +             +       G+I L + ++++ + + LF+  RD  
Sbjct: 118 ELQIDIASLKQMLTEHWKSAGGVAAQMLPSLKSGGLILLTFLMNLVLVPVVLFYLLRDWN 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ +Q+  L   ++      ++R    V+     G T +     +   +  WL  +   +
Sbjct: 178 NLIRQVGELIPPVWQKQIFTLARETDDVLAEFMRGETAVITIMSIYYVTGLWLVKLEFAL 237

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE--LFIVDKTLRPFL 300
            +G+I+ I+  +P    I+  A++ +  I      +  + +W  +     +    + P L
Sbjct: 238 PIGLISGILVFVPYLGTITGLALATFAAITQFQEWSGVIAVWVVVGSGQLLESMLITPRL 297

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           VG  I L  +   F L+   +  G +G+ +   + A
Sbjct: 298 VGERIGLHPVAVIFALLAFGQLFGFIGILLALPVSA 333


>gi|254282735|ref|ZP_04957703.1| permease, PerM family [gamma proteobacterium NOR51-B]
 gi|219678938|gb|EED35287.1| permease, PerM family [gamma proteobacterium NOR51-B]
          Length = 357

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 113/357 (31%), Gaps = 12/357 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                 + ++  +I+   LV L  +     PVL AL++ +    + +   ++     +  
Sbjct: 11  RYFSEEESVVLLIILVSALVVLITIGDVLTPVLVALVLAYLMQGVANQLAAR-GVPQSLG 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             IA +  M +F      L      ++  L+ +     +    +   L+     + + + 
Sbjct: 70  VWIALLLFMGVFFGSSFGLVPLIWQQLASLLRESPEMIEQVSNLLNGLAAEYPQLISQQQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + L   Q         +    +  IP              + ++ + + +FFF +D  
Sbjct: 130 VEELLGGIQRELAQFGQVVLARSLSRIPGLL--------ALLVYMVLIPMLVFFFLKDQQ 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I     S          ++I + + + + +   G  I  I  G     A+ + G+    
Sbjct: 182 KIFAWFSSFLPER-RPLLQRIWQEMDQQVSNYVRGKVIEIIIVGSTSYLAFTIMGLNYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LG++  +  +IP       T   + +     G       +     +   +    L P L
Sbjct: 241 LLGLLVGLSVIIPYIGATLVTVPVVMVAYFQWGVGSELYAITAAYLVIQLLDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               + L  +     ++      GL G+F    L  L+  +       +       S
Sbjct: 301 FSEAVNLHPVAIIIAVLFFGGIWGLWGVFFAIPLATLVNAVLCAWPARLDSPPNPAS 357


>gi|194290057|ref|YP_002005964.1| hypothetical protein RALTA_A1960 [Cupriavidus taiwanensis LMG
           19424]
 gi|193223892|emb|CAQ69901.1| conserved hypothetical protein, UPF0118; putative membrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 367

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 132/345 (38%), Gaps = 3/345 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  + +      + F   ++ ++I+  T +P+      K        A +  ++ 
Sbjct: 20  IRAGLIAVLAIFCFQIFRPFLDLIVWSVILAVTIYPLQVRLRRKLGNKDGRAATLIVLAA 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  +P   L    +  +   ++ +     H  P    ++  P             +  
Sbjct: 80  IAIIALPAYLLGAAMVDSVANAMAVIRKEGLHIPPPAESVASWPLVGQRLYDVWLQAASD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  I +           +   A+  G   L +  ++I   I + +      S  Q    
Sbjct: 140 LTGVIQAHAPQVREISLAVLGTAAGIGKGLLIFVFALIIGGIFMAYGEAGNRSAVQIAAR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P   ++I+ +    IR+   G+  IA  + L++G A+ + GVP+   L +   +
Sbjct: 200 VFG---PERGQRIASLCTATIRAVAQGVVGIAFIQMLLIGVAFVIKGVPAAGVLAMAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +    A +    V IY+        AT +F        + D  L+P L+G  + +P  
Sbjct: 257 LGIAQLPATLITVPVIIYVFASEGASVATIVFSIYVFVAGLADNVLKPLLLGRGVDVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               G +GG+ T G++GLFIGPV++A+   ++ + +       E 
Sbjct: 317 VVLIGALGGMVTGGVIGLFIGPVVLAVGYQLFWQWVEDPPSQTEP 361


>gi|15902821|ref|NP_358371.1| hypothetical protein spr0777 [Streptococcus pneumoniae R6]
 gi|116516125|ref|YP_816255.1| hypothetical protein SPD_0768 [Streptococcus pneumoniae D39]
 gi|148988292|ref|ZP_01819739.1| hypothetical protein CGSSp6BS73_05680 [Streptococcus pneumoniae
           SP6-BS73]
 gi|148993687|ref|ZP_01823134.1| hypothetical protein CGSSp9BS68_05315 [Streptococcus pneumoniae
           SP9-BS68]
 gi|149007182|ref|ZP_01830846.1| hypothetical protein CGSSp18BS74_05016 [Streptococcus pneumoniae
           SP18-BS74]
 gi|149010494|ref|ZP_01831865.1| hypothetical protein CGSSp19BS75_04047 [Streptococcus pneumoniae
           SP19-BS75]
 gi|182683788|ref|YP_001835535.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|194398662|ref|YP_002037509.1| hypothetical protein SPG_0796 [Streptococcus pneumoniae G54]
 gi|237650528|ref|ZP_04524780.1| hypothetical protein SpneC1_07370 [Streptococcus pneumoniae CCRI
           1974]
 gi|237822667|ref|ZP_04598512.1| hypothetical protein SpneC19_10283 [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298231088|ref|ZP_06964769.1| hypothetical protein SpneCMD_10508 [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255725|ref|ZP_06979311.1| hypothetical protein SpneCM_09065 [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503121|ref|YP_003725061.1| permease [Streptococcus pneumoniae TCH8431/19A]
 gi|303255290|ref|ZP_07341361.1| hypothetical protein CGSSpBS455_07411 [Streptococcus pneumoniae
           BS455]
 gi|303260393|ref|ZP_07346362.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|303262750|ref|ZP_07348688.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|303265039|ref|ZP_07350953.1| membrane protein [Streptococcus pneumoniae BS397]
 gi|303267131|ref|ZP_07353000.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|303269373|ref|ZP_07355144.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|15458373|gb|AAK99581.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
 gi|116076701|gb|ABJ54421.1| membrane protein, putative [Streptococcus pneumoniae D39]
 gi|147761220|gb|EDK68187.1| hypothetical protein CGSSp18BS74_05016 [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764975|gb|EDK71904.1| hypothetical protein CGSSp19BS75_04047 [Streptococcus pneumoniae
           SP19-BS75]
 gi|147925973|gb|EDK77047.1| hypothetical protein CGSSp6BS73_05680 [Streptococcus pneumoniae
           SP6-BS73]
 gi|147927767|gb|EDK78790.1| hypothetical protein CGSSp9BS68_05315 [Streptococcus pneumoniae
           SP9-BS68]
 gi|182629122|gb|ACB90070.1| membrane protein [Streptococcus pneumoniae CGSP14]
 gi|194358329|gb|ACF56777.1| conserved hypothetical protein [Streptococcus pneumoniae G54]
 gi|298238716|gb|ADI69847.1| possible permease [Streptococcus pneumoniae TCH8431/19A]
 gi|302597759|gb|EFL64834.1| hypothetical protein CGSSpBS455_07411 [Streptococcus pneumoniae
           BS455]
 gi|302636072|gb|EFL66569.1| membrane protein [Streptococcus pneumoniae SP14-BS292]
 gi|302638428|gb|EFL68894.1| membrane protein [Streptococcus pneumoniae SP-BS293]
 gi|302641091|gb|EFL71467.1| membrane protein [Streptococcus pneumoniae BS458]
 gi|302643339|gb|EFL73617.1| membrane protein [Streptococcus pneumoniae BS457]
 gi|302645399|gb|EFL75632.1| membrane protein [Streptococcus pneumoniae BS397]
          Length = 369

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 108/323 (33%), Gaps = 6/323 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L    + + + PI +      + +     +I   +++   ++ +
Sbjct: 30  LINPFVSVLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 90  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                G++G+ +     +++  I
Sbjct: 324 SSNIYGVVGMIVAVPTYSILKEI 346


>gi|255522001|ref|ZP_05389238.1| membrane protein [Listeria monocytogenes FSL J1-175]
          Length = 318

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 105/297 (35%), Gaps = 7/297 (2%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+      + +       ++  ++ + L ++ ++ L      ++ EL   +    Q    
Sbjct: 1   PLVLFLEKR-KVPRLLSVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEK 59

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
             + LS+       S L    +        +S   + +  +D +             + +
Sbjct: 60  WLQDLSNN------SALKDLDIKQELEKLNISLPKIMSVVVDGVASSFGAIVSFVSSFVM 113

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++ +   +F+ ++DG    +           +  K+I + + K I +      I  +  
Sbjct: 114 ILVTVPFIVFYMFKDGHKFVESSGRFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFV 173

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           GL     Y + G P  +  G I     +IP   P    A ++ + +  +   A  + +  
Sbjct: 174 GLFTFIGYLIIGQPYALLFGFIAGATNIIPYLGPFIGAAPAVIVALFTSPVQALLVIVVV 233

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            I   I    L P+++G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 234 TIVQQIDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 290


>gi|149026354|ref|ZP_01836509.1| hypothetical protein CGSSp23BS72_01657 [Streptococcus pneumoniae
           SP23-BS72]
 gi|147929316|gb|EDK80315.1| hypothetical protein CGSSp23BS72_01657 [Streptococcus pneumoniae
           SP23-BS72]
          Length = 369

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 112/335 (33%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L    + + + PI +      + +     +I   +++   ++ +
Sbjct: 30  LINPFVSVLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 90  VYLLPILINQLSSLIISSQTIYSRIQDLIIDLSNYPALQNLD------VEATIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +     +++  I K      + +K
Sbjct: 324 SSNIYGVVGMIVAVPTYSILKEISKFLSRLYENHK 358


>gi|323705254|ref|ZP_08116829.1| protein of unknown function UPF0118 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535156|gb|EGB24932.1| protein of unknown function UPF0118 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 343

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 126/352 (35%), Gaps = 14/352 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           MR      +     +I+ ++L   Y     +K    P+L ++I+ +   PI +    K  
Sbjct: 1   MRICKRYIRYFTWIIIILVVLYFFYMNANKIKEILLPLLVSIILAYLINPIVTYIEKK-G 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I    +M +  +  +F+F   + EM  L   +             + +    
Sbjct: 60  IKRVQSIIIVYFLLMIVVSLFAIFIFPVIVNEMSNLFKMIPDYISLLNDKVNNIKNDYLS 119

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
               E     +                  ++ I   A +  +    + +++I   I  F+
Sbjct: 120 YLPKEFNKIFIKRANMFDKQ---------MELIVDRAMQSVISMTGHLVNLILSPIITFY 170

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +D   +   ++          + KI + +  V+ +       I++    +      + 
Sbjct: 171 LLKDKEVLKNGINEFIPQKMRETFLKILKDIDYVLSNYIRSQIYISLIVTFLTSIGLMIL 230

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V   + +G++  I  +IP   PI  +  ++ + +  + +     F+   +   I    +
Sbjct: 231 RVKYSLLIGILAGIFNVIPYFGPILGSIPAVVMGLMDSFYKGVWSFVVFFLVQQIESAII 290

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            P ++   + L  +     L+ G +  G+LG+ +   ++A++ VI+K+  + 
Sbjct: 291 APKIMSDNVDLHPITVIIALLVGEQFFGILGMLLSVPVVAVVKVIFKDIFIK 342


>gi|332161640|ref|YP_004298217.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318605868|emb|CBY27366.1| putative membrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665870|gb|ADZ42514.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861398|emb|CBX71629.1| UPF0118 inner membrane protein ydiK [Yersinia enterocolitica
           W22703]
          Length = 367

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 71/359 (19%), Positives = 141/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+             
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKILWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A+I T+ ++ LF++P+  L    +     L+      +   +P   WL  IP  G   
Sbjct: 66  LAAIIMTILLVLLFVIPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSIPMVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   ++ I            ++   A+  G     + + +  M++     Y 
Sbjct: 126 YSGWHSLIAGGGNVLIAKIQPYVGAAATWLVAQAAHIGY----FLIHLALMVLFSILLYF 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+ 
Sbjct: 182 HGEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  I  +   G  +      I+L   G+    T L +W  I    +D  LRP+
Sbjct: 242 YATLFTVLMFICCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCIV-GTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESITE 359


>gi|148262711|ref|YP_001229417.1| hypothetical protein Gura_0632 [Geobacter uraniireducens Rf4]
 gi|146396211|gb|ABQ24844.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 348

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 45/319 (14%), Positives = 109/319 (34%), Gaps = 12/319 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF++   + +L++L++ +   P+      +          I  +++    ++  L L  Y
Sbjct: 27  YFMRHTLSALLTSLVLAYLLNPLLKRLEKR-GLRRLSALGILYLALATAIVLASLLLVPY 85

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + +++ L + V     +               W   L   +     +  +       T+
Sbjct: 86  LVHQLETLATAVPSYVLNLKGDMD--------EWQVRLAPYYSGEEGAWLLARGKESLTS 137

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               I           L    ++I   I +FF       I   +  L           + 
Sbjct: 138 LAQEISGMGYNRLTAILYGIFNLILAPILVFFMLLYKQHIKDLILRLTPPAQRRQLSDLG 197

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + + + +    +GM +  +  G+++  A +L  +   V  GVIT   +++P         
Sbjct: 198 KRINRSMERFIIGMFMDCLLVGILIAIALYLLDIQFAVLNGVITGFASIVPFVGVAFAVI 257

Query: 265 VSIYLLIKGNIFNATC---LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             + +    +           ++  I + I    ++P ++   ++L  L   F ++    
Sbjct: 258 PPLLIGYAQSGDPLIIAKVCGVYFLINVIIEGNLIKPLVMRHTLRLNPLAVIFAVMAMGE 317

Query: 322 TMGLLGLFIGPVLMALIAV 340
            MG  G+ +   L A+I +
Sbjct: 318 LMGFWGIVLAIPLAAVIKI 336


>gi|168490308|ref|ZP_02714507.1| membrane protein [Streptococcus pneumoniae SP195]
 gi|183571357|gb|EDT91885.1| membrane protein [Streptococcus pneumoniae SP195]
          Length = 369

 Score =  126 bits (317), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 112/335 (33%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L    + + + PI +      + +     +I   +++   ++ +
Sbjct: 30  LINPFVSVLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLIWGMVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 90  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +     +++  I K      + +K
Sbjct: 324 SSNIYGVVGMIVAVPTYSILKEISKFLSRLYENHK 358


>gi|149196508|ref|ZP_01873562.1| hypothetical protein LNTAR_08459 [Lentisphaera araneosa HTCC2155]
 gi|149140188|gb|EDM28587.1| hypothetical protein LNTAR_08459 [Lentisphaera araneosa HTCC2155]
          Length = 363

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 135/345 (39%), Gaps = 4/345 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+++  + L     F   +L ALII    +P++     K        A +  +  
Sbjct: 18  IRMTLILYLSYLCLKVFAPFALLMLWALIIAIVLFPLHQKLAKKFNGKQGRAATVIVLLG 77

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +   P++ L +  +  +++L       N         + + P     +       S  
Sbjct: 78  CLIIGTPVVVLGFSMVDHVQDLYRAYESGNVQIKEPKESVKEWPIIGRKAHQLWTDASAD 137

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S  ++      T+    +   A         +  +++     + F  R   ++ +  + 
Sbjct: 138 FSAFLVDYKEPITSFFKKMLGAAGGAMGSVAMFMGALVISGFMMAFGDRGSVAMLKIANR 197

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P   +K++++    +RS   G+  +A  + L++G    LA +P+   L ++   
Sbjct: 198 ITG---PERGEKLTKLSVMTVRSVTTGVIGVAFIQALIIGVGLILADIPAAAILSLVVMF 254

Query: 251 MAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++   A I    V IY+    G+   A   F    I   + D  L+P L+G  +  P 
Sbjct: 255 LGILQLPAVIILLPVIIYMWSSTGSSLAANIFFTIYFIVGSLSDNILKPMLLGRGVDAPM 314

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                G +GG+   GL+GLF+G  L+A+   I+ + +   + N++
Sbjct: 315 PVVLIGALGGMMASGLIGLFLGATLLAVAYRIFMDWVDDPEGNQK 359


>gi|104780561|ref|YP_607059.1| permease [Pseudomonas entomophila L48]
 gi|95109548|emb|CAK14249.1| putative permease [Pseudomonas entomophila L48]
          Length = 357

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 127/352 (36%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M+  +  +      +I V LY L    +P L  +++ + + P+      +   S T+  V
Sbjct: 1   MIELRRWIWLGAALLIAVLLYLLHNILSPFLVGILLAYLADPLVDRLE-RAGLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       +F+  LL L      ++  L             V         G+       
Sbjct: 60  VVFSLFTLIFLALLLVLIPMLAKQLLRLYELAPQMLDWLQHVALPWVQSRLGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +               T+ +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAIGE----HMGQTTDIVGVLLSQATASSLALIGWLANLVLIPVVGFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L SL      +    ++    +V+ +   G  ++ +  G++  +   L G+   + +
Sbjct: 176 MAKLRSLLPRQRESQVVGLAGECHEVLGAFVRGQLLVMLALGVIYSTGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++  + A++P    I     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GMLAGLAAIVPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      KE+ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKESD 347


>gi|260662858|ref|ZP_05863752.1| permease [Lactobacillus fermentum 28-3-CHN]
 gi|260552939|gb|EEX25938.1| permease [Lactobacillus fermentum 28-3-CHN]
          Length = 354

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 117/336 (34%), Gaps = 10/336 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+     P++ +L + +   P++   +     K        +++  + ++ +
Sbjct: 15  FVFTPLLVFVSVVITPLIISLFLYYMLKPLFRLLMKIKVYKWHMKRGIASLVVVIGLVLI 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  L    + E+ +++  +  A +    + + +S+ P           HLS   S 
Sbjct: 75  VAGGISALIPSVLNELNQVIHWLPQAAKESQKMIQEISEHPWVRKL------HLSTYYSQ 128

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                +      +  +   A           +  I + + LF+ ++DG  +   +  L  
Sbjct: 129 INDQVSKYVRQIVTGLTSSAGTIIGTITSTVIVAITVPVMLFYMFKDGNRLVPSVQKLFP 188

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++ R + + + S   G  I  +   +     Y + G P  V LGV+  I  M
Sbjct: 189 ENSRDEVGELLRKMSQTLSSYISGQAIECLFVAIATSIGYLIIGQPLAVVLGVVAGIANM 248

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ + I         + +   I   I    + P ++G  +++  L   
Sbjct: 249 IPYVGPYIGITPSLMVSIAVAPEKIIWVIVVVVIVQQIDGNIIYPNIIGKTLQIHPLTII 308

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             L+      G+ G+ +     A++  +    I   
Sbjct: 309 MLLLAAGNIAGIPGMILCIPCYAVVKTVVTYLISIY 344


>gi|45934803|gb|AAS79467.1| putative permease [Streptomyces bikiniensis]
          Length = 382

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 105/323 (32%), Gaps = 14/323 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++ + ++  +    ++  L  +     P++  L+I   +WP     + +        A +
Sbjct: 20  ISTELLLVLLGTAAVIWLLGRMWSIVWPLVIGLLITTLTWPFA-RLLRRLGWPPALAASV 78

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            TV  + +    +  +      +  EL   VV   Q                W +     
Sbjct: 79  VTVLFLAVTAGTVALIAVPVASQSGELADGVVEGIQRLRE------------WTAGPPLN 126

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +  + + T    N +  +    +      ++  ++ +  +  +FFF +DG    
Sbjct: 127 IGDDQITGALDTATDRLQNSVGSLLTTLATGVGTVVNGVVTAVLALFLMFFFLKDGPRFL 186

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L              I+      + +       + + + +++G   W+ GVP  + L 
Sbjct: 187 PWLARQLPGRLATDATTIAERGWDTLGAFVRSQAAVGLLDAVLIGIGLWILGVPLVLPLA 246

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+T + A +P    +       +  L+   + +A  +     +   +     +P +    
Sbjct: 247 VLTFVSAFVPIIGALLAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRG 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLG 327
           + L        +  G    G++G
Sbjct: 307 LGLHAAVVLLAVTLGGSLAGIVG 329


>gi|116748040|ref|YP_844727.1| hypothetical protein Sfum_0593 [Syntrophobacter fumaroxidans MPOB]
 gi|116697104|gb|ABK16292.1| protein of unknown function UPF0118 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 376

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 129/350 (36%), Gaps = 4/350 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ + ++    L  F   ++ ALI+  T +P++     +        A +  +  
Sbjct: 24  IRAGLILVLAMLCYQVLSPFLTLMVWALILAVTIFPLHQFLAGRIGGRQGLAAALLVIVG 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L +VP   L       + +LV+ V   +         +   P                
Sbjct: 84  LMLIVVPTAMLMSSLGDSVHQLVNDVQNNSLKIPAPRPGVEGWPVVGKKVHDIWSRAYAD 143

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + S              F +      L +  S I   I + F    G       + 
Sbjct: 144 LPALVQSMQPKIGELAKTALGFVAGIAGGLLQFIASFIVAGIIMAFGQSGGRGSLAIFER 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +          + +R+    IR+   G+  +A  + +++G A  ++GVP   AL +I  +
Sbjct: 204 IVG---RERGGEFARLSTSTIRAVSQGVIGVAFIQAIIVGLALLVSGVPWAGALALIVLV 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +    A I      +Y+ + G+  NA  +      I   + D  L+P ++G  +  P 
Sbjct: 261 LGIAQIPALIVTLPAIVYIWMSGHYGNAAAVAYTVVLILSGMTDNVLKPLMLGRGVDAPM 320

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G +GG+ T G+LG+F+G  L+ L   ++   + A  +  +  + +
Sbjct: 321 PVILLGALGGMGTAGILGMFVGATLLTLGYQVFMGWVAANPDAGQAQAES 370


>gi|269794843|ref|YP_003314298.1| putative permease [Sanguibacter keddieii DSM 10542]
 gi|269097028|gb|ACZ21464.1| predicted permease [Sanguibacter keddieii DSM 10542]
          Length = 415

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 32/343 (9%), Positives = 94/343 (27%), Gaps = 19/343 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++       +  +L  L G    ++ AL +     P+    +                 
Sbjct: 29  AVVTVFAAIFVWRALGSLTGLIVNLIIALFLALAMEPMILWLVKH-GWKRGAATATVLFG 87

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++      +       + +  +L++ +                                 
Sbjct: 88  LLAAAGAVIALFGRMFLEQAGDLITSLPRTYDSVTLWAE----------------NQFDV 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   +  L  +  + +   A   G   +    +   +++  ++    G      + 
Sbjct: 132 MIPEMEELQAQLLQDYGNEVASRALAIGSSVIGGLFAFATIMLVAYYLAAAGPRFRASIC 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++  I    I        ++A       G    +  +P  + L + T 
Sbjct: 192 GWLRPKNQTEVLRLWEITQIKISDYINSRVVLAAIASFFTGVFLTIIDIPYALPLALFTG 251

Query: 250 IMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +++  +P     I      ++ L  G+   A  +  +  +   + +  L P +    +++
Sbjct: 252 VVSQFVPTIGTYIGGALPIVFALTSGSWQKAVMVLGFIILYQQVENMWLSPKISARALQM 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +F  ++      G LG F+   + A I  +    +   +
Sbjct: 312 NPAVSFVVVLAFGAVFGALGAFLSLPVAATIQAVATTYLRRHE 354


>gi|240138654|ref|YP_002963126.1| putative permease (PerM family) [Methylobacterium extorquens AM1]
 gi|240008623|gb|ACS39849.1| putative permease (PerM family) [Methylobacterium extorquens AM1]
          Length = 370

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 114/350 (32%), Gaps = 10/350 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+   I+ +++  LY L+    P ++ L + +   P+      +         ++   
Sbjct: 4   RAIIGLSILAVVVFLLYELREVMLPFVAGLALAYLLDPLADRLE-RLGLGRLAATLLILA 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  F+V L+ +      ++  LV+ +         +         G     +    + 
Sbjct: 63  GFVVGFVVLLIIVVPLAAGQIASLVNSLPTMVWRLQSILVE----RAGPLLQRIGGTEVV 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +             +         +     ++   +  F+   D   +   L
Sbjct: 119 NELQSSVGTLVGQGGAWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIAAL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D           ++++  +   +     G +++ +  G       +L G+   V +G+I+
Sbjct: 179 DGWVPPRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMIS 238

Query: 249 AIMAMIPGGAPISFT-----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  IP    ++          +     G+  +         +  F+    + P LVG 
Sbjct: 239 GFLTFIPYVGTLTGFLLSVGVALVQWWPSGDWLHIGLTVGVFLVGQFLEGNVISPKLVGD 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +   F L+      G LGL +   + A I VI +  I    E+K
Sbjct: 299 SVGLHPVWLMFALLAFGSLFGFLGLLLAVPVAASIGVIVRFGIERYLESK 348


>gi|146307480|ref|YP_001187945.1| hypothetical protein Pmen_2457 [Pseudomonas mendocina ymp]
 gi|145575681|gb|ABP85213.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 362

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/332 (21%), Positives = 143/332 (43%), Gaps = 3/332 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F++ +  A ++ F SWP+        +   +  A I T   + L   PL++L + 
Sbjct: 22  WVLAPFWSALFWAAVLAFASWPLMRLLTQLLKGRLSLAAGILTCGWVILVAGPLIWLGFN 81

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +K+  + +      G+P P        G+         L      +  +       
Sbjct: 82  LADHIKDANALIKDLQVEGLPPP---PAWLTGLPLVGERLAALWMTIDQQGAAFFASLRP 138

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +  +            L +   ++ +FFFYRDG  ++  +  L E L         
Sbjct: 139 YLGQVGNWLLARSAQLGGGMLELGLSLVLVFFFYRDGPRLAVFVHGLLERLIGERADHYL 198

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +V   ++    G+   A  +GL+    +W+AGVP  + LG++T +++++P G P+ +  
Sbjct: 199 ELVAGTVQRVVNGVIGTAAAQGLLALIGFWIAGVPGAIVLGILTFVLSLVPMGPPLVWIP 258

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + +L+ +G+   A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   G
Sbjct: 259 ATAWLVWQGDYGFALFLGVWGMFVISGVDNILKPYLISRGGNLPLVVVLLGVFGGLLAFG 318

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +GLF+GP L+A+   +  + +       E++
Sbjct: 319 FMGLFLGPTLLAVAYSLLSDWVADKAPPAEEV 350


>gi|86739869|ref|YP_480269.1| hypothetical protein Francci3_1161 [Frankia sp. CcI3]
 gi|86566731|gb|ABD10540.1| protein of unknown function UPF0118 [Frankia sp. CcI3]
          Length = 415

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 101/331 (30%), Gaps = 14/331 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++I+L+ +  ++    P+++ L+I     P+      +   +    A  A  
Sbjct: 86  RLIVTGAAIYILLMVVGRVRIVVIPLIAGLLIAALIHPLAHRLQ-RLGMNRLGAAFTALF 144

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +F+   + + +    E+  +  +V    +      R                    
Sbjct: 145 VFFAVFVGAGVAVGFNAANEIPTVSDQVSEGVEQIRGYLR------------NGPLHLSQ 192

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +        N    +         +  +    ++  + + FFF  DG  I   +
Sbjct: 193 SQIDNLVDDIRKSLANNRGRLVSGVISGASVAAEVLTGLLVTLFSTFFFLYDGDRIWNWI 252

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +          +   R     +     G   +A  + + +       GVP    L ++T
Sbjct: 253 VTRFPDGAEERVRGAGREAWNTLTGYIRGTVFVAAVDAIGITIGLVGVGVPLVAPLALLT 312

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                +P        A ++ + L+   + +A  +         +    L+P ++   ++L
Sbjct: 313 FFGGFVPIVGATVAGAAAVLVTLVSNGVPDALIILGVVLAVQQVEGHLLQPLVMRRAVRL 372

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     L  G    G+ G        A++
Sbjct: 373 HPLAIVIALSAGGVLAGIPGAIAAVPFAAMV 403


>gi|148549257|ref|YP_001269359.1| hypothetical protein Pput_4051 [Pseudomonas putida F1]
 gi|148513315|gb|ABQ80175.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 354

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 121/348 (34%), Gaps = 8/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +      +I V LY L     P L  +++ + + P+      +   S T+  V+   
Sbjct: 2   RRWIWLGAALLIAVLLYSLHNILTPFLVGIMLAYLADPLVDRLE-RLGLSRTWGVVVVFG 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L +  LL L      ++  L                 ++                 
Sbjct: 61  LFTLLLLALLLVLVPMLAKQLVRLYELAPQML----DWLEHVALPWVQGRLGLADGFWKF 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I +     T+ +  +   A+   +  + +  +++ + +  F+  RD   +  +L
Sbjct: 117 DKIKAAIGAHMGQTTDIVGMLLSQATASSLALVGWLANMVLIPVVGFYLLRDWDLMMGKL 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L           ++    +V+ +   G  ++ +  G++  +   L G+   + +G++ 
Sbjct: 177 RGLLPRQREPQVMGLAGECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLIGMLA 236

Query: 249 AIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + A++P    I     ++   +    G+++    +     +   +    L P LVG  I
Sbjct: 237 GLAAIVPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLVGDRI 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G    G  G+ +   + A+I V+ +      KE+ 
Sbjct: 297 GLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHALYKESD 344


>gi|260544905|ref|ZP_05820726.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260756769|ref|ZP_05869117.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260760200|ref|ZP_05872548.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260763438|ref|ZP_05875770.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882585|ref|ZP_05894199.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|265993113|ref|ZP_06105670.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999137|ref|ZP_05465132.2| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297249715|ref|ZP_06933416.1| hypothetical protein BAYG_02478 [Brucella abortus bv. 5 str. B3196]
 gi|260098176|gb|EEW82050.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260670518|gb|EEX57458.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292]
 gi|260673859|gb|EEX60680.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260676877|gb|EEX63698.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
 gi|260872113|gb|EEX79182.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
 gi|262763983|gb|EEZ10015.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263092386|gb|EEZ16639.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
           63/9]
 gi|297173584|gb|EFH32948.1| hypothetical protein BAYG_02478 [Brucella abortus bv. 5 str. B3196]
 gi|326553915|gb|ADZ88554.1| conserved hypothetical protein [Brucella melitensis M5-90]
          Length = 354

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALP-ESLEEWLK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 122 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 182 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 241 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 300

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 301 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 349


>gi|289164173|ref|YP_003454311.1| predicted permease [Legionella longbeachae NSW150]
 gi|288857346|emb|CBJ11174.1| putative predicted permease [Legionella longbeachae NSW150]
          Length = 359

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 96/337 (28%), Positives = 175/337 (51%), Gaps = 1/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + II +SL+ +  F   ++ A II   ++P+Y  +           A++ T
Sbjct: 6   KELISMGLTVGIIALSLFIIHRFIPSMIWASIIVIATYPLYERWRRFFGSKDDLSALLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  L ++PL +L    + E++  ++ +   N+ G   P +L + P       ++  + 
Sbjct: 66  TLIGLLLLLPLSWLVGLLIKELQIFINFLQSLNEKGGMAPEFLKNFPWIGSDLVVYWDNN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +     + +    +     +  + G       + + F +++LFFFYRDG  +  Q
Sbjct: 126 IGKPGMIKGLLSNIH-LSLTPTSYYVKQIGSNLAHRSVQVGFTLLSLFFFYRDGDRLITQ 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +GE+     W + +  +PK +R+T  G  ++ +G G ++G  Y L G P+   +G I
Sbjct: 185 IYLVGENCLGKRWFRYADRLPKALRATVNGTIVVGLGVGFLMGVCYGLVGFPAPTLVGFI 244

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           TA+ AMIP   PI F  V++ L   G++F A  + +WG + +F+ D  ++P L+GG I+L
Sbjct: 245 TALAAMIPFVVPIVFITVAMILFAFGSMFGAIAVLVWGTLVMFVADHFIKPALIGGAIEL 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           PFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 305 PFLAVLFGILGGVETLGLLGLFVGPLVMVLFVTLWQE 341


>gi|148997048|ref|ZP_01824702.1| hypothetical protein CGSSp11BS70_09810 [Streptococcus pneumoniae
           SP11-BS70]
 gi|168575531|ref|ZP_02721467.1| membrane protein [Streptococcus pneumoniae MLV-016]
 gi|307067471|ref|YP_003876437.1| putative permease [Streptococcus pneumoniae AP200]
 gi|147756748|gb|EDK63788.1| hypothetical protein CGSSp11BS70_09810 [Streptococcus pneumoniae
           SP11-BS70]
 gi|183578514|gb|EDT99042.1| membrane protein [Streptococcus pneumoniae MLV-016]
 gi|306409008|gb|ADM84435.1| Predicted permease [Streptococcus pneumoniae AP200]
          Length = 369

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 113/335 (33%), Gaps = 6/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L  + + + + PI +      + +     +I   +++   ++ +
Sbjct: 30  LINPFVSVLNTIMIPFLLGVFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 90  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G++G+ +     +++  I K      + +K
Sbjct: 324 SSNIYGVVGMIVAVPTYSILKEISKFLSRLYENHK 358


>gi|229013608|ref|ZP_04170739.1| hypothetical protein bmyco0001_40160 [Bacillus mycoides DSM 2048]
 gi|229135213|ref|ZP_04264012.1| hypothetical protein bcere0014_41150 [Bacillus cereus BDRD-ST196]
 gi|228648255|gb|EEL04291.1| hypothetical protein bcere0014_41150 [Bacillus cereus BDRD-ST196]
 gi|228747667|gb|EEL97539.1| hypothetical protein bmyco0001_40160 [Bacillus mycoides DSM 2048]
          Length = 361

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P   A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFFIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFGGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVV 349


>gi|229493922|ref|ZP_04387694.1| integral membrane protein [Rhodococcus erythropolis SK121]
 gi|229319199|gb|EEN85048.1| integral membrane protein [Rhodococcus erythropolis SK121]
          Length = 397

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 101/317 (31%), Gaps = 14/317 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +  +I    +  L     PV  A+++    WP     I +        A I  V  + + 
Sbjct: 40  LGAWIFGWLIEKLWVIILPVALAIVVATVMWPPTRGMIKR-GMPPAAAAGITLVLSIGIL 98

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  +    + +  EL +K            +                          
Sbjct: 99  AGVIAGIVPSVVSQAPELANKTTEGINQVQDWLQ------------GPPLNLKDDQIDNA 146

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +           I               +++  ++I  FFF +DG      L ++G  
Sbjct: 147 VHAVITKVQESGTAIASGVFSGVSTASSLLVTLGLVLILAFFFIKDGPRFIPWLHAVGGG 206

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               + +++   +   +        ++++ + + +G+   + GVP    L ++T I   I
Sbjct: 207 RAGRHLEEVLTRMWDTLGGFIRTQALVSLIDAVFIGAGLLILGVPLAPVLAILTFIGGFI 266

Query: 255 PGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P        A+++ + +    +  A  + +       I    L+P L    +KL  +   
Sbjct: 267 PIVGAFVAGALAVLVALVANGLTTAIIVLIIILAVQQIEGNVLQPVLQSKSMKLHAVIVL 326

Query: 314 FGLVGGVRTMGLLGLFI 330
             +  G    G++G F+
Sbjct: 327 LAVAAGSSLYGIVGAFL 343


>gi|260564563|ref|ZP_05835048.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265989779|ref|ZP_06102336.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260152206|gb|EEW87299.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263000448|gb|EEZ13138.1| conserved hypothetical protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 354

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFGINGYIARIMAALP-ESLEEWLK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 122 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 182 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGITFWLLGIEAALLW 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LRP LVG 
Sbjct: 241 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRPPLVGK 300

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 301 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 349


>gi|91781893|ref|YP_557099.1| hypothetical protein Bxe_A3952 [Burkholderia xenovorans LB400]
 gi|91685847|gb|ABE29047.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 383

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 118/347 (34%), Gaps = 8/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +      I   I + L+ L     P L   I+ +   P  +  + ++       A++  
Sbjct: 38  RRAFTWLAIALGIGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRV-PRGLAALVMM 96

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L  + +L +      E  +L  +V +   H     +     P         +   
Sbjct: 97  LFFTLLMTLLVLLVLAVVQKEGPQLRQQVPVLFAHANAWLQ-----PKLALLGLADSLDF 151

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  + + +            +        G + +    +++ + + LF+   D   +  +
Sbjct: 152 ASIRDMVMGQLEGSAQTVALYAWTSIRTSGNVMITVVGNVVMVPLVLFYLLYDWNRMLAR 211

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++    +     +++  + +++     G  ++          A  LA     + +G+ 
Sbjct: 212 MQTVVPRRWLDKTLQLAHDMDQMLSQYLRGQLLVMGVLAAYYAIALSLARFEIALPVGIF 271

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +  A+++       G+ +    + L   +   +    L P LVG  I
Sbjct: 272 TGLAVFIPYIGFATGLALALLAALLQFGDWYGFGAVALIYGVGQILESFFLTPRLVGERI 331

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  L   F L+   +  G  G+ +   + A+++V  +E   +   +
Sbjct: 332 GLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVATRELRQSYLAS 378


>gi|325677165|ref|ZP_08156832.1| integral membrane protein [Rhodococcus equi ATCC 33707]
 gi|325552038|gb|EGD21733.1| integral membrane protein [Rhodococcus equi ATCC 33707]
          Length = 401

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 111/352 (31%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +   +  L+    PV  AL+      P   +   +     +   ++A V
Sbjct: 32  RLLVLFAGLLALGYVVSKLESVVIPVALALLFAAFLMPAVDNLHRR-GVPRSAAVLVAVV 90

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L F+    +  + +L  +   +                  W ++       
Sbjct: 91  GTIGIVGAILSFVVQQFVEGLPDLSDQFTTSVTKAQE------------WLTQGPLHFSE 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      +  + +   A     +  +        +  L FF   G  + + +
Sbjct: 139 DQIRHAGDNVVKAIQSNQEALTSGALTTATVIGEIFAGAFLTLFTLVFFLYGGNQVWEFV 198

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +   R     +         +A  + + +G+   + GVP  + L  + 
Sbjct: 199 TRIIPKNTRGRVRLAGRQGFNSLVHYTRATVAVAAVDAIGIGAGLAILGVPLALPLASLV 258

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     ++     +  L+   +  A  +       + +    L+P L+G  ++L
Sbjct: 259 FVGAFIPIVGAFVTGFLAVLVALVTKGLLTALIVLGIIVGIMQLEGHVLQPLLLGRAVRL 318

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     +  G+   G++G  +   ++A +    +       +  E++  +
Sbjct: 319 HPLAVVLAITTGIVLAGIVGGLLAVPIVAFLNTAIRSLCAGDTDEAEEVYES 370


>gi|330941425|gb|EGH44238.1| hypothetical protein PSYPI_18336 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 359

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 119/354 (33%), Gaps = 10/354 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDMRRWFWIGGLALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +  LL L      ++  L                       G+       
Sbjct: 60  VVFGLFTLVLMALLLILVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F   RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFLLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L      A   K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 TGKIRGLLPRQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGN-----IFNATCLFLWGAIELFIVDKTLRPF 299
           GVI  + A++P    +     ++   +                 +      +    L P 
Sbjct: 236 GVIAGLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFFFMFGQALEGMVLTPL 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LVG  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 296 LVGDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDLYKDSE 349


>gi|270292857|ref|ZP_06199068.1| membrane protein [Streptococcus sp. M143]
 gi|270278836|gb|EFA24682.1| membrane protein [Streptococcus sp. M143]
          Length = 371

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 105/326 (32%), Gaps = 6/326 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I+   +        P L      + + PI +    K + +     +I   +++   +V 
Sbjct: 29  AIVTPFVMVANTIMIPFLLGGFFYYLTNPIVTFLEKKCKVNRLIGVLITLCALIGTIVVG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+            +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLTSLIVSSQNIYSRLQDLIYDLSMNPIFQNID------IQKTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +               L +I   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVSNSLGSVLSALFSTVLILIMTPVFLIYFLLDGHKFLPMLERTVLKHDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             +  + + +   I     G+ I A+  G +    Y   G+   +   + + +  +IP  
Sbjct: 203 LNFSSLLKNLNATIARYISGIAIDAVIIGCLAYIGYSTIGLKYALVFAIFSGLANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I   +  +        ++  I   +    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMIIANVFTDPHRVLIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
                 G++G+ +     +++  I K
Sbjct: 323 LSSNIYGVIGMIVAVPTYSILKEITK 348


>gi|255280602|ref|ZP_05345157.1| putative membrane protein [Bryantella formatexigens DSM 14469]
 gi|255269067|gb|EET62272.1| putative membrane protein [Bryantella formatexigens DSM 14469]
          Length = 381

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 104/346 (30%), Gaps = 11/346 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVS 69
           I  ++ ++     P+L+ +I                                  V++ + 
Sbjct: 36  IAYAVSWMLDLLEPLLAGMIAALVLNVPLCFIERHLFRKNPTPRKERARRPLAIVLSLIL 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHLS 128
           V+ +FI   + +    +  +  + S VV        +                       
Sbjct: 96  VLGIFISVAVLVIPELVNAVAAVSSAVVELLDELAALENSADFSEIPFGEYLSRIDIDWI 155

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +         L  + ++      S      ++  +  +F I  L    +    + + +
Sbjct: 156 RLRGDLENVLKQLGNSILNKAGGAISIAVSSVVNGIVGFVFAIYILANKEKLSRQVRRLI 215

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    A    ++ +   V      G T  AI  G +      +  +P    +G + 
Sbjct: 216 RVWLPEKVGAGIIHVASVCGGVFHLFIAGQTTEAIILGTLCTIGMLILRMPYAPMVGALV 275

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++ A+IP         +  +L++  +   A    ++      +    + P +VG  + LP
Sbjct: 276 SVTALIPYVGGFIAAFIGAFLILTESPVKAVVFVIFFIALQQVEGNLIYPRVVGAKVNLP 335

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +     +  G    G +G+ +G   +A    + KE+    +   +
Sbjct: 336 SMWVLAAITIGGSLGGPIGMLLGVPTVASAYKLLKEATDKRERRMQ 381


>gi|159899319|ref|YP_001545566.1| hypothetical protein Haur_2800 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892358|gb|ABX05438.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 425

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/357 (14%), Positives = 123/357 (34%), Gaps = 8/357 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  M     ++  + +  ++V+ Y     F     A ++     P+      + + S   
Sbjct: 14  RRVMTATLVVLAIIGLAFVIVNFY---SVFVVAFIAFVLSTAIRPLVQLLQ-RLKISPQL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +IA + ++ L +  ++ +      ++  + +K+                      A  
Sbjct: 70  GVIIAYLLLLALLVGIVVLMAPLITEQITAITAKIPEYYHDARQFLISSRSSFIRNLALR 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    L  P SL  ++ +       D                   +I  ++  F++  DG
Sbjct: 130 LP---LDAPISLSGVAPSETSQQQTDVAVSQLVTVVENAGISLFVLIATLLLGFYWTLDG 186

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + L  L        W+ +   +   + +   G  I+ +  G +  +AY L G+   
Sbjct: 187 DRVLRTLLQLVAAEKRENWRSLIAEIQAKMGAFIRGQLILDLSIGALSTAAYLLIGIDYA 246

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + LG++  ++  IP   P+       +  L +G+      + +   +   I    L P +
Sbjct: 247 IVLGILAGLLETIPILGPVLGAVPPLLITLAQGDTTAFIWVIVATVVIQQIEGTFLVPKV 306

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +   + +  + T         T+GL G  +   L A++ +I+   +    E    ++
Sbjct: 307 MDRAVGVNAVLTLVAFAAFSATLGLAGGILAVPLAAIVQIIFTRLVFNQAETSTNVT 363


>gi|187919648|ref|YP_001888679.1| hypothetical protein Bphyt_4945 [Burkholderia phytofirmans PsJN]
 gi|187718086|gb|ACD19309.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 360

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 171/345 (49%), Gaps = 5/345 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFL 62
           + N +     + + ++L++L+ ++ F A V  A ++    WP+             +T +
Sbjct: 19  LKNQKAASLVLYIGLVLLALWVVRDFIAVVAWAAVLAIALWPLLRKVEGNRWFTGRTTLI 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A + T+++  L ++P+       + E  ++      A ++GIP+P ++  +P G   +  
Sbjct: 79  AAVLTLAIALLVVLPVGVGIAQALREAHDMSDWFKDAQENGIPLPDFIQHLPFGAQQASA 138

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W +      +  +     +K      +      FG           FM+I LF  ++ G 
Sbjct: 139 WWQA---NLAQPLRGSAAMKGLHSTTVMTLGRHFGARAAHAVAVFGFMLITLFVIFQAGP 195

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +S  L       F     ++   +   +R T  G+ ++ +GEG +LG AY++ G+P   
Sbjct: 196 RLSSSLLKGVRRGFGEDGAQLLLRMATAVRGTVSGLVVVGLGEGALLGVAYFVTGLPHVA 255

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++TAI AM+P  AP++F   +++L+ +G++     L ++G++ +FI +  +RP L+G
Sbjct: 256 LLALVTAIAAMLPFCAPLTFGLAALWLVSQGSVAAGVGLAVFGSVVVFIAEHFVRPVLIG 315

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + + 
Sbjct: 316 NSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLVR 360


>gi|282865329|ref|ZP_06274381.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282559802|gb|EFB65352.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 471

 Score =  126 bits (317), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 97/309 (31%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      ++AL++     P                  +  V
Sbjct: 87  RLLVLAGTLWVLMRVISAVQLVVLAFVAALLVTAMLQPTVVRL-KHLGLPRGLATAVTAV 145

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  +  L  +V    +                W  +       
Sbjct: 146 LGFVVIGLVGWFVVWQVMDNLDTLSDRVRDGIEELKR------------WLLDSPFHVTE 193

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    + +       + I     +   + +++   ++  + +  F   DG  I +  
Sbjct: 194 QQINDIAKNLSDTIGTNTEEITSAGLQGVTVMVEFLTGLLLAMFSTLFLLYDGRRIWEWT 253

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 254 LKLVPAQARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFI 313

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   +F A  + +       I    L+PF++G  +++
Sbjct: 314 FLFAFVPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRV 373

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 374 HPLAVVLSV 382


>gi|309803069|ref|ZP_07697168.1| putative membrane protein [Lactobacillus iners LactinV 11V1-d]
 gi|312872535|ref|ZP_07732603.1| putative membrane protein [Lactobacillus iners LEAF 2062A-h1]
 gi|312874917|ref|ZP_07734936.1| putative membrane protein [Lactobacillus iners LEAF 2053A-b]
 gi|308164850|gb|EFO67098.1| putative membrane protein [Lactobacillus iners LactinV 11V1-d]
 gi|311089662|gb|EFQ48087.1| putative membrane protein [Lactobacillus iners LEAF 2053A-b]
 gi|311091897|gb|EFQ50273.1| putative membrane protein [Lactobacillus iners LEAF 2062A-h1]
          Length = 380

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPVLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFIVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIINTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        ++ +    +   M+ +            LFF  +DG  I+  L S     
Sbjct: 163 NTGKASFNLFLENLFGAVNVISMLIVTLLT----APFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDMNIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|225568845|ref|ZP_03777870.1| hypothetical protein CLOHYLEM_04924 [Clostridium hylemonae DSM
           15053]
 gi|225162344|gb|EEG74963.1| hypothetical protein CLOHYLEM_04924 [Clostridium hylemonae DSM
           15053]
          Length = 381

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 103/336 (30%), Gaps = 2/336 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +   + +     L  FF P +    I F + P+ +    + +      + I  + V
Sbjct: 23  AFSLLGTVLFIFLGVRLLAFFMPFVIGWFIAFIASPVVNWLERRLKIVKKLGSAIIIIGV 82

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLS 128
           +   +  L F       E+  LV  +    +        +     G++    +       
Sbjct: 83  LAGLVFLLYFAGSRLWREIVSLVQNMPDLYKQLESGLSDIGKTLDGVFTILPKGIQNGWH 142

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S    +   L     +     A  F        ++ I  +I+ +FF  D  ++    
Sbjct: 143 AIVSNLDSTVGDLMGRISEPTVTAAGNFAKKIPSVLIATIVTVISAYFFIADREAVIAWS 202

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +           +   +   +   F     I +    +L   + L GV   + L ++ 
Sbjct: 203 KKIAPDPVVRRMSMVIDNMKYAVGGYFKAQMKIMVVVFALLLVGFLLMGVHFQILLALLI 262

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A +  +P     +              +      +       +V + ++P LVG  + L 
Sbjct: 263 AFLDFLPFFGTGTALIPWALYKFMVGNYRLAIALMALYAVTQLVRQLIQPKLVGDSMGLN 322

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L T   L  G +   +LG+     +  ++  +++ 
Sbjct: 323 PLVTLVLLYVGYKVGSVLGMIFAVPVGMIVINLFQA 358


>gi|186477237|ref|YP_001858707.1| hypothetical protein Bphy_2488 [Burkholderia phymatum STM815]
 gi|184193696|gb|ACC71661.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 358

 Score =  126 bits (316), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 117/344 (34%), Gaps = 8/344 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +   I   + + L+ L     P L   I+ +   P  +    ++       A +  
Sbjct: 13  RRAFIWLAIALAVGILLWLLSPVLTPFLLGAILAYILQPGVAWMTRRRV-PRGLAASLMI 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + +  +  L +      E+ +L  +V +   H           P         +   
Sbjct: 72  LFFVAIVTLLGLLVLGVIQKEVPQLKQQVPMFFSHLHGWL-----TPKLAVLGVSDSLDF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  + + +            +          + +    +++ + + LF+   D  ++  +
Sbjct: 127 ASIRDMVMGQLEGSAQTVALYAWTSIRTSSNVMITVVGNVVMVPLVLFYLLYDWNAMLAR 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +       + A    ++R +  ++     G  ++     +   +A ++AG    + +G+ 
Sbjct: 187 VRGFIPRRWFAKTIHLARDMDHMLSQYLRGQLLVMGVLAVFYAAALYIAGFEIALPVGIF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +   +++       GN +    + +   +   +    L P LVG  I
Sbjct: 247 TGLAVFIPYLGFATGLVLALLAALLQFGNWYGFGAVAVIYGVGQILESFFLTPRLVGERI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L  L   F L+   +  G  G+ +   + A+++V + E   + 
Sbjct: 307 GLHPLAVIFALLAFGQLFGFFGVLLALPVSAMLSVAFHELRQSY 350


>gi|152996109|ref|YP_001340944.1| hypothetical protein Mmwyl1_2087 [Marinomonas sp. MWYL1]
 gi|150837033|gb|ABR71009.1| protein of unknown function UPF0118 [Marinomonas sp. MWYL1]
          Length = 353

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 104/351 (29%), Gaps = 12/351 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    N + ++  +++   L  L F  G  AP+L A+++ F    +      +       
Sbjct: 10  KRYFSNEEVVVFLLLLIATLCVLAFWGGILAPILIAIVLAFLLQGLVDRLQ-RLRLGHLP 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I   + +    V +  +      +   LV              +  ++    +    
Sbjct: 69  SVFIVFFTFLTTCSVFIGVMVPIIWRQAVRLVQDAPRMFMVIRNEVQQFAEGHSDL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                          S     TN   ++  F+           + ++ + + +FF  +D 
Sbjct: 125 ----VSQAAIDEVTNSLANESTNLGQWLLSFSLSSIPSLFSVVIYVVLVPLVIFFLLKDQ 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L S          + I+  +   I +   G  I     G+V    + + G+   
Sbjct: 181 DKILTYLTSWLPKE-RKMMRNIAHEMNGQIANYIRGKFIEMFVVGVVTYVVFLVFGLKYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  +  +IP     + T   + +     G       + +   I   +    L P 
Sbjct: 240 ELLALLVGLSVLIPYIGAAAVTIPVVLVAFYQYGTQSEFIYVVVAYLIVQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L    + L  L     ++      G  G+F    L  L+  I        +
Sbjct: 300 LFSEAVNLHPLAIIVAVLFFGGIWGFWGIFFAIPLATLVKAIINAWPNQEQ 350


>gi|294635431|ref|ZP_06713920.1| permease, PerM family [Edwardsiella tarda ATCC 23685]
 gi|291091200|gb|EFE23761.1| permease, PerM family [Edwardsiella tarda ATCC 23685]
          Length = 356

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 113/355 (31%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I    I+ +    +YF  G  AP+L A+++ +      +        S  +
Sbjct: 7   RRRFTDPQAIALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTNKLEG-IGCSRIW 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + +V +L L      +   L+  +             L      +    
Sbjct: 66  AVCVVLLVFIGIVLVTMLVLIPIVWQQGLGLMGDMPKMVTRFYEYAATLPRRYPAL---- 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    + + +         + + +F+    +  +   + ++ + + +FF  +D 
Sbjct: 122 ----MDAGIIDVVVENLRARMALMGESVLKFSLASLVGMVTLAIYLVLVPLMVFFLLKDK 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  +          ++   + + I +   G  +  I  G+     + + G+   
Sbjct: 178 EQMLNALRRVLPRE-RGLAGQVWLEMNQQITNYIRGKVVEMIVVGVATYLVFLILGLNYG 236

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 237 LLLAVLVGVSVLIPYIGAVLVTIPVVLVALFQWGMGADFWTLFIAYLVVQGLDGNVLVPL 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     ++      G  G+F    L  L+  +             
Sbjct: 297 LYSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDDFGNEAP 351


>gi|149180329|ref|ZP_01858834.1| hypothetical protein BSG1_04900 [Bacillus sp. SG-1]
 gi|148852521|gb|EDL66666.1| hypothetical protein BSG1_04900 [Bacillus sp. SG-1]
          Length = 391

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 110/339 (32%), Gaps = 5/339 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L  L + F   PI +      +       +I  V ++ L +
Sbjct: 47  ISFLFHPLTIFITTLFFPILITLFLYFLLNPIVNFIQRY-KVPRVVAILIIYVLIIGLLV 105

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      +   L +++             LS               L   Q   +
Sbjct: 106 LAIGNIVPTITKQFTALANELPTYAAKTFQYFENLSRSAEFKEFMNEQQDLLETAQERLV 165

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                L T                  +  + ++ + + LF+ ++DG      +       
Sbjct: 166 AFANDLPTLITGSFQNLLGLVA----NIAIILVTVPLLLFYMFKDGHKFPIAVSKFFPSE 221

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      I +     + +   G   + +  G++    Y +  +   + L +  A+  +IP
Sbjct: 222 YRKEAITILKETGSTLAAYIQGQVTVGLFVGILSLIGYLIIDLRFALVLAITVAVTNIIP 281

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+   A ++ + +  +   A  + L   I   +    L P ++G  +          
Sbjct: 282 YVGPLIGGAPAVIVGLFESPTKALLVLLILVIAQQVEGNILSPLILGKTLDTHPATIIIL 341

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L+      G+LG+ +     A+I  +    +  +K  KE
Sbjct: 342 LLAAGNLAGVLGMILAVPTYAVIKTVIINLVKFLKARKE 380


>gi|308070328|ref|YP_003871933.1| hypothetical protein PPE_03578 [Paenibacillus polymyxa E681]
 gi|305859607|gb|ADM71395.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 355

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 119/353 (33%), Gaps = 24/353 (6%)

Query: 12  MRWMIMFIILVSLYFLKG-----------FFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +  ++  +IL  ++ L+              AP   A+II +   P+ S    + +   +
Sbjct: 14  IWTLLGLVILYFIWLLRPLFLHLYEFLKTIIAPFAVAMIISYVLNPVVSMLGGR-KVPRS 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++     +   +V L+ L    + ++ EL   +     H   +   +          
Sbjct: 73  VAVLLIYAVFLASLVVILMNLIPMFIEQLDELNEHLPELTMHAQGLMTNMDSGILPQGVR 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +     ++      +    N    I            +   ++  +   +F+  +D
Sbjct: 133 TGMNQWFFQLENRMATGISSFMDNIGGMI------------NMLFNVFIVPFLIFYILKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                + + S            + + + + + +   G  ++ +  G++    Y L G+P 
Sbjct: 181 FDVFERTIVSYLPRSRRKAIVSVLKEIDQALGNYVRGQLLVCVIIGVMAYLGYMLIGMPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L  + A+  ++P   P    A ++ +    ++     + +       +    + P +
Sbjct: 241 ALLLAGVVAVFNIVPYLGPFLGAAPAVVMASTVSLKMVLLVVVVNTCIQVLESNVISPQV 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           VG  + L  +   F L+ G    G+ GL +   +MA+  V  +       + K
Sbjct: 301 VGRTLHLHPIAIIFALLVGGEIAGITGLILAVPVMAVFKVGLQHFFAYYVKRK 353


>gi|114321629|ref|YP_743312.1| hypothetical protein Mlg_2482 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228023|gb|ABI57822.1| protein of unknown function UPF0118 [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 359

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 118/358 (32%), Gaps = 11/358 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            T  +PQ ++  +++ +    + F+    APVL++L++ +            +       
Sbjct: 10  RTFNDPQVVVLGLVLLLGFGVVLFMGNMLAPVLASLVLAYLLEGFVRYLERWRV-PRLAA 68

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  +S     +   L LF     ++ +LV ++      G  +   L +    +++   
Sbjct: 69  VTVVFLSFTAFLLALFLVLFPVLYRQLVQLVEQLPAILARGQALLLQLPEHYPQLFSEAQ 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + +   +   I             +  F+ +  ++ +   + ++ +   +FFF +D  
Sbjct: 129 MREIIDGLRRELIDW-------AQRVVTSFSFQSVVVIVTLLVYMVLVPFMVFFFLKDKR 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q L             ++ R V   I +   G  +  I    V    + L G+   +
Sbjct: 182 LMLQWLSDHLP-RDRGLASEVWREVDLQIGNYVRGKFVEIIIVWAVTFITFSLFGLQFAM 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  ++P       T     +       +     L +   I   +    L P L
Sbjct: 241 LLAVMVGLSVIVPYVGAAVVTLPVAIIAYFQWGVSPEFAWLMVAYFIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               + L  +     ++      G  G+F    L  LI  + K    A    ++    
Sbjct: 301 FSEAVNLHPVAIIVAILVFGGVWGFWGVFFAIPLATLIQAVIKAWPSAASHREQAQGE 358


>gi|310643516|ref|YP_003948274.1| protein [Paenibacillus polymyxa SC2]
 gi|309248466|gb|ADO58033.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 355

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 119/342 (34%), Gaps = 13/342 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
             W++  + L    FLK   AP   A+II +   P+ S    + +   +   ++     +
Sbjct: 25  FIWLLRPLFLHLYEFLKTIIAPFAVAMIISYVLNPVVSMLGGR-KVPRSVAVLLIYAVFL 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              IV L+ L    + ++ EL   +     H   +   +              +     +
Sbjct: 84  ASLIVILMNLIPMFIEQLDELNEHLPELTMHAQGLMTNMDSGILPQGVRTGMNQWFFQLE 143

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      +    N    I            +   ++  +   +F+  +D     + + S 
Sbjct: 144 NRMATGISTFMDNIGGMI------------NMLFNVFIVPFLIFYILKDFDVFERTIVSY 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      + + + + + +   G  ++ +  G++    Y L G+P  + L  + A+ 
Sbjct: 192 LPRSRRKAIVSVLKEIDQALGNYVRGQLLVCVIIGVMAYIGYMLIGMPYALLLAGVVALF 251

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P   P    A ++ +    ++     + +  A    +    + P +VG  + L  L 
Sbjct: 252 NIVPYLGPFLGAAPAVIMASTVSLKMVLLVVVVNACIQVLESNVISPQVVGRTLHLHPLA 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             F L+ G    G+ GL +   +MA++ V  +       + K
Sbjct: 312 IIFALLVGGEIAGIAGLILAVPVMAVLKVGLQHFFAYYVKRK 353


>gi|302331566|gb|ADL21760.1| Putative integral membrane protein [Corynebacterium
           pseudotuberculosis 1002]
          Length = 419

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 93/302 (30%), Gaps = 14/302 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP      SKK   +T   +I  +            +      + K+LV +     Q 
Sbjct: 63  VLWPPVRWLRSKKVPPAT-AVLIVAIGFFGAIGSIFAAMAPSVSSQSKDLVDRANEGVQR 121

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            +                       +      I + T         I             
Sbjct: 122 ALHWAEH------------GPLNLDTSQVDGYIQNVTQALQEHSRNIANGVFSGLTTASS 169

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             ++II M+I  FFF +DG      +  +       +  ++   +  V+        I++
Sbjct: 170 ILITIILMLILSFFFLKDGTRFLPMVRRVAGPNLGWHLTEVLTRIWNVLAGFIRAQAIVS 229

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCL 281
           + + +++G    +  VP  + L V+T     IP     +      +  L+   + NA   
Sbjct: 230 LVDAVLIGIGLLILKVPLALVLAVLTFFGGFIPIVGAFTAGALAVVIALVSNGVSNAIFA 289

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +       I    L+P L    + L        +  G     ++G F+   + A +AV+
Sbjct: 290 LILIITVQQIEGHILQPVLQSRAMNLHAAVVLLSVTIGSALFSVVGAFLAVPVAATLAVL 349

Query: 342 WK 343
            +
Sbjct: 350 IR 351


>gi|309812879|ref|ZP_07706611.1| putative membrane protein [Dermacoccus sp. Ellin185]
 gi|308433157|gb|EFP57057.1| putative membrane protein [Dermacoccus sp. Ellin185]
          Length = 456

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/321 (10%), Positives = 87/321 (27%), Gaps = 15/321 (4%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           +     P  S F             +  + + C  +          + E++ L+S     
Sbjct: 63  LAAAIEPAVSRFA--MHMPRALATGLVVLLLACAVVGFFAAFGGLLVDEVQALISAAPGL 120

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
               +                +  T +  +     +        N    +          
Sbjct: 121 VTDCVDWVN-----------RKFDTDYDINKLLSSVNLTPDNVANYGSQLAGGVLGLVTS 169

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +    ++  +I    +       +   +  L           +  +    +        
Sbjct: 170 VVSTAFNLFVLIFFTCYISAGLPRLRTWVAGLFPPRQQRVVLTVWEVFVAKVGGYVAARF 229

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGN-IFN 277
           I+A     +  +   L G+P  +ALG+ T I+A  +P         + + +    +   N
Sbjct: 230 ILATISATIHCTFMMLIGMPYWLALGLWTGIIAQFVPNIGTYISIVLPVLVGATSDKPIN 289

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              + ++  +   I + T+ P +    + +    +F   + G    GL G  +G    A 
Sbjct: 290 GLFVLIFAIVYQQIENVTIEPNISARAVDVHPAVSFASALAGANMFGLAGGLLGVPAAAT 349

Query: 338 IAVIWKESIMAIKENKEKISS 358
              I        +     + +
Sbjct: 350 AMAILDLYKTRYEVKSSTLDA 370


>gi|317051128|ref|YP_004112244.1| hypothetical protein Selin_0950 [Desulfurispirillum indicum S5]
 gi|316946212|gb|ADU65688.1| protein of unknown function UPF0118 [Desulfurispirillum indicum S5]
          Length = 366

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 114/354 (32%), Gaps = 12/354 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              NPQ  +  + + I    + F+     P  +A+II +    +      +     T  A
Sbjct: 12  HFSNPQVAILAIALIIGFSVVIFMGNILMPFFAAIIIAYLLDGLVQKLC-RLGIPHTPAA 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  V  M  F+  L  +      ++ +L  ++ L    G      L ++     + +  
Sbjct: 71  ILVFVVFMGAFLFLLFAIVPMIARQLTQLAREMPLMINMGQQALMRLPEMYPEFISQQQV 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             +++   S                I  ++       + + + +I + + +FFF +D   
Sbjct: 131 RNYINLMTSE--------VGKFSQQILSWSLASVTSIIAFLVYLILVPLMVFFFLKDKEH 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + Q   S            +   V   I S   G  +  I    +  + + + G+   + 
Sbjct: 183 LIQWFSSFLP-ENRPLMNLVWSEVNIKIASYVRGKAMEIIIVWAISYATFAIMGLDFALL 241

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L ++  I  +IP       T    ++     G       L +  AI  F     L P L 
Sbjct: 242 LAMLVGISVLIPYVGATVVTIPIAFIAYVQWGFTSQFAYLMIAYAIIQFFDGNILVPILF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              + L  +     ++      G  G+F    L  LI  I           +++
Sbjct: 302 SEVVNLHPIAIVTSILVFGGLWGFWGIFFAIPLATLIQSIIGAWPNKEVIQEQE 355


>gi|15900756|ref|NP_345360.1| hypothetical protein SP_0873 [Streptococcus pneumoniae TIGR4]
 gi|14972346|gb|AAK75000.1| membrane protein [Streptococcus pneumoniae TIGR4]
          Length = 369

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 107/323 (33%), Gaps = 6/323 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L      + + PI +      + +     +I   +++   ++ +
Sbjct: 30  LINPFVSVLNTIMIPFLLGGFFYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 90  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I  +        ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                G++G+ +     +++  I
Sbjct: 324 SSNIYGVVGMIVAVPTYSILKEI 346


>gi|315646087|ref|ZP_07899207.1| hypothetical protein PVOR_11660 [Paenibacillus vortex V453]
 gi|315278286|gb|EFU41602.1| hypothetical protein PVOR_11660 [Paenibacillus vortex V453]
          Length = 358

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 112/327 (34%), Gaps = 9/327 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    +        PV  A    +   PI      +++   +   ++       L  
Sbjct: 26  ISFLFRPIVSMFNMLIVPVAMAGFFYYLLRPIVDYLE-RQKIKRSIGVLMLYFVFAGLCA 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  + ++     +M+  +S      +        L   P        +       +S   
Sbjct: 85  IFGIVVWPTLREQMETFISNAPFLVEGVQEQIDQLQQNP--------YWSRFIPTESELT 136

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S T      I +I    +    +     + I  + I L++  ++G  +  +L S+    
Sbjct: 137 TSLTEYMNRIITWISNSINNLITVVSGVVVIIATIPIILYYMLKEGNKLPPRLLSVLPRR 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F    +++   +   + +  +G  I+ +   +++   + + G+P  + L VI+  +  IP
Sbjct: 197 FRRDGQEVLGEMDSALSNFIIGKVILNLILSVLIYIGFLIIGLPYSLLLTVISFFLNFIP 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +  T   + +        A    +   I   I D  L P + G  + +  L T   
Sbjct: 257 YIGALLATIPVVIVGFIEAPSIAIWSVVVIVIAQQIQDNILTPVIYGKQLDIHPLTTVVL 316

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++ G    GLLG+ +      +I ++ 
Sbjct: 317 ILVGGDFFGLLGILLAIPAYMIIKILV 343


>gi|294636262|ref|ZP_06714670.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
 gi|291090449|gb|EFE23010.1| putative membrane protein [Edwardsiella tarda ATCC 23685]
          Length = 368

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 130/346 (37%), Gaps = 6/346 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L         I  +++  L+ ++ F      A ++   +WP+               
Sbjct: 10  KYDLARIIFGSLFIALLLISCLWVVQPFILGFTWASMVVIATWPVLVWLQRHLWGKRWLA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++ T+ ++ LF++P+  +    +     ++     A    +P   WL  +P        
Sbjct: 70  VLLMTLLLLLLFVIPIGMVIASLITNAGPILDWAANARNWQMPQLEWLQTLPLVGEKLYA 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L    +L    + ++      F+ + A         + L    M++     Y  G 
Sbjct: 130 SWHGLMSEGALMAKIQPYIGQAITWFVTQAA-----HVGGFFLHCSLMLLFSALLYSRGE 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +      L          +  + IR+  LG+ + A+ + L+ G    ++G+   V
Sbjct: 185 DVALGIRHFAIRLAAERGDAAVILGGQAIRAVALGVVVTALAQSLLAGIGLAVSGIHYAV 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+  +  +   G  +       +L   G+    T L +W  +    +D  LRP L+ 
Sbjct: 245 LLTVVMFVCCLAQLGPLLVLLPAVGWLYWSGDTTWGTLLLVWSGVV-GTMDNVLRPALIR 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               LP L    G++GG+   G++GLFIGPV++A+   +    +  
Sbjct: 304 MGADLPMLLVLSGVIGGLLAFGMIGLFIGPVVLAVSYRLVSAWVNE 349


>gi|229169133|ref|ZP_04296848.1| hypothetical protein bcere0007_40850 [Bacillus cereus AH621]
 gi|228614361|gb|EEK71471.1| hypothetical protein bcere0007_40850 [Bacillus cereus AH621]
          Length = 361

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P   A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFFIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFGGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQVLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVV 349


>gi|148653241|ref|YP_001280334.1| hypothetical protein PsycPRwf_1439 [Psychrobacter sp. PRwf-1]
 gi|148572325|gb|ABQ94384.1| protein of unknown function UPF0118 [Psychrobacter sp. PRwf-1]
          Length = 366

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 112/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + M I L  LY L     P L A I+ +   P+ +              +    
Sbjct: 11  RRLFIVVAMVIGLGLLYLLIPVIVPFLCAFILAYLFNPVVTRMAR--FMPRWLAIIFVYT 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++  F   L +L      +++     +    +      R   +         L +  +S
Sbjct: 69  AIIVGFGALLWWLLPTLWEQLQSAWEYLPRVVEWYNSDIRVWVNNNSQFHLPPLESHIVS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++                        G+  ++    ++ + I  F+F  +     Q  
Sbjct: 129 --ETALDYLNKNYNVADAQSFFMQVLNSGLAVINSTGLVVLVPILTFYFLFNWNQRLQTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I       + +   G  ++ I  G+V      L G+   + +G++ 
Sbjct: 187 KKALPKASAPKIIEIVHDCDDALMAFIKGQLLVMILLGVVYAVQLQLIGLDLGLIIGMVA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          +I   +     +  +   +     +   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGLGFIAAIIAGLFQFGMDWVHLGLIAGAFMVGQAVEGYVLQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G   MG +G+ I   + A++ V++     A K+  
Sbjct: 307 GLSPLWVIFAVLAGASLMGFVGMLIALPVSAILNVLFHHGYEAYKQTD 354


>gi|257093350|ref|YP_003166991.1| hypothetical protein CAP2UW1_1757 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257045874|gb|ACV35062.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 377

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 125/349 (35%), Gaps = 4/349 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +++ ++L+  +F   F   +L ALI+  T +P++     +        + +  +  
Sbjct: 24  VRTGLVLALVLLCYHFFSPFLTMMLWALILAVTIYPLHEMLAGRIGGKQGLASTLIVLVA 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + + P + L       + ELV  V             ++  P                
Sbjct: 84  IAVIVTPTIMLASQFGDSVHELVKGVRDNTLEVPAPSEKVAAWPVVGKKVHAIWSQAHDD 143

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + S                +  G   L + L+ I   I + +      ++    + 
Sbjct: 144 LPALVKSMQPKIGELATKALGIVAGLGGGLLMFVLAFIVAGIMMAYGESGAQAMQAIFER 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +          + + +    +R+   G+  IA  + L++G +  +A VP    L VI  +
Sbjct: 204 VFGLARGK---EFTNLSSATVRAVASGVIGIACIQALLIGVSLMIASVPFAGLLAVIVLV 260

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +    A +    V  ++   G+        +    +   + D  L+P ++G  +  P 
Sbjct: 261 LGVAQLPALLVTLPVIGWIWASGDYATVPAAAYSVLLVVGGMADNVLKPIMLGRGVDAPM 320

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                G +GG+ T G+LG+FIG   +AL   I+   +    E   + ++
Sbjct: 321 PVILIGALGGMATSGILGMFIGATALALGYQIFMRWVDDNPERVRQQAA 369


>gi|228967465|ref|ZP_04128494.1| hypothetical protein bthur0004_42630 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792242|gb|EEM39815.1| hypothetical protein bthur0004_42630 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 361

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVI 349


>gi|260597659|ref|YP_003210230.1| putative inner membrane protein [Cronobacter turicensis z3032]
 gi|260216836|emb|CBA30340.1| UPF0118 inner membrane protein ydiK [Cronobacter turicensis z3032]
          Length = 375

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 135/356 (37%), Gaps = 6/356 (1%)

Query: 1   MRETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+ M  PQ ++  + +  +I+  L+ ++ F      A  +   +WP+            
Sbjct: 7   LRQPMDVPQILLSVLFLSVMIIACLWIVQPFILGFAWAGTVVIATWPLLLRLQKMLWGRR 66

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   ++  + ++ LF++P+  L    +      +  +         +    S    G   
Sbjct: 67  SLAVLVMVLILIMLFVIPVALLVNSLVDSSGPFIHWLTSGQMTIPDLAWLHSIPYIGDKL 126

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   +    S  +            +    A+  G       +    M++     Y 
Sbjct: 127 YLGWHNLVESGGSAIMAKVRPYLGTTTGWFIGQAAHLGR----LLMHCGLMLLFSALLYW 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P
Sbjct: 183 RGEQVALGIRHFAIRLASKRGDAAVVLAGQAIRAVALGVVVTALVQGVLGGIGLAISGIP 242

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP 
Sbjct: 243 YATLLTVVMILSCLVQLGPLPVLVPAIIWLYWSGDATWGTVLLVWSAVVGTL-DNIIRPM 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +      +E 
Sbjct: 302 LIRMGADLPMVLILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFSVWVSEAPLPEEN 357


>gi|226945734|ref|YP_002800807.1| hypothetical protein Avin_36860 [Azotobacter vinelandii DJ]
 gi|226720661|gb|ACO79832.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 368

 Score =  126 bits (316), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 125/343 (36%), Gaps = 8/343 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M +    +    +F     +Y L    +P L  +++ +   P+     ++   S T+  +
Sbjct: 1   MTDSNRWLWLAGVFFSGWLVYLLMPILSPFLIGILLAYLGDPLVDRLEAR-GLSRTWGVI 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   L ++ LLFL      ++  L             V      +  G+       
Sbjct: 60  AVFALFGLLLVLALLFLLPSLGRQLVHLYELAPQMLDWLQQVVLPWVQVKLGLAKGFWHL 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L      ++   T + T     +   A+  G+  L +  +++ + +  F+  RD   +
Sbjct: 120 EQLKSMFVGQLDKTTNVLTQ----LLSQATASGLALLAWLGNLLLVPVVSFYLLRDWDIL 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L +L           +     +V+ +   G  ++ +  G+V      L G+   + +
Sbjct: 176 VAKLRTLLPRRREGVVVGLVGECHEVLGAFLRGQMLVMLALGVVYALGLMLVGIDLGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++  + +++P    +     ++   +    G+ +    +    ++   +    L P LV
Sbjct: 236 GLLAGLASIVPYMGFVVGIGAALVAALFQFGGDPYPLIGVVAVFSVGQLLEGMLLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  I L  +   F ++ G +  G  G+ +   + A+I V+ + 
Sbjct: 296 GDRIGLHPVAVIFAVLAGGQLFGFTGVLLALPVAAVIMVLLRH 338


>gi|296115814|ref|ZP_06834440.1| hypothetical protein GXY_08485 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977791|gb|EFG84543.1| hypothetical protein GXY_08485 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 352

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 78/352 (22%), Positives = 158/352 (44%), Gaps = 4/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T           +  +I+ SLY  + F    +  +I+  T++P+Y     ++   + 
Sbjct: 1   MGNTSRVQYVATGGFVCLVIMASLYIEQSFLGAFVWGIILSITAFPLYQVL-RRRGCGNM 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +++ +V +  L  VPL+ +    + ++  L      A+Q GIPVP+ ++D+PGG    
Sbjct: 60  VASLVISVGIFALLAVPLVAMVAKAVADLPSLYDWAKSASQTGIPVPKQVADLPGGSSKI 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +      S      T+L +    F            ++   + +  +++++FF   
Sbjct: 120 APLWQ---KYLSDPNELRTWLGSVSHTFATADGKNLTHRLMEVAETFMIAVLSVYFFLVS 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             S+   + ++G+             +   +R T  G+ ++ +GEG ++G  Y++AG P 
Sbjct: 177 AESLIGDIRAVGKKFLGRRATDAIDNIVGSVRGTVAGLVLVGMGEGGIIGIGYFMAGTPH 236

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                ++TAI++++P   P+     +           A  + L G +  F  D  +RP L
Sbjct: 237 PALFMLVTAIVSIVPFCGPVILALAAATTFAASGGGAALIVGLIGCVAYFFGDHFVRPKL 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + G  K+PFL     ++GG+   GLLGLFIGP ++A+   +W+ ++   + +
Sbjct: 297 ISGNTKIPFLAVLTAILGGLHACGLLGLFIGPAVIAVAFSLWRSAVADSRAD 348


>gi|294010794|ref|YP_003544254.1| putative permease [Sphingobium japonicum UT26S]
 gi|292674124|dbj|BAI95642.1| putative permease [Sphingobium japonicum UT26S]
          Length = 369

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/340 (20%), Positives = 138/340 (40%), Gaps = 3/340 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
               G+    ++ + +     ++ FFA +L  +I      P+    +          A +
Sbjct: 10  RIEDGVFLGFVLIVSVAFALVIEPFFAAILWGVIAAILFAPVNQGLVGMMPRHRNSAAAL 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ L IVP + L    + E     +KV     +   +            A+ L   
Sbjct: 70  TLLLIVALVIVPAIILAMALVQEATLFYAKVQTGEINFARMFAQFQASLPRWAAAFLERL 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +++  +++ +    + ++    +   A + G     + +++  M+   FF  RDG  ++
Sbjct: 130 GITNFAAVREMLSEGITSSF-RTVATQALQIGQSAFSFLMALGVMLYLTFFLLRDGPKLA 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +D             + +    VIR+T  G  ++AI +G++ G  +W  G+P  +  G
Sbjct: 189 AMVDRAAPMRTAYRQA-LMQQFVIVIRATIKGSIVVAIVQGVIGGVVFWALGLPGALLWG 247

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+    ++IP     + +  V+IYL + G +     L   G   + +VD  LRP LVG  
Sbjct: 248 VLMGAFSLIPAVGTGLVWVPVAIYLFVTGAVVEGLILAFCGMFVIGMVDNILRPILVGRD 307

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++P        +GG+   G  G+ IGPV+ AL    W  
Sbjct: 308 TRIPDYVVLITTLGGIDLFGFNGIVIGPVIAALFIATWNI 347


>gi|88706616|ref|ZP_01104319.1| conserved hypothetical protein, membrane (DUF20) [Congregibacter
           litoralis KT71]
 gi|88699112|gb|EAQ96228.1| conserved hypothetical protein, membrane (DUF20) [Congregibacter
           litoralis KT71]
          Length = 383

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 112/323 (34%), Gaps = 7/323 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +   +  + + +   + V  Y L+    P +   + G+   P+      +   S TF  +
Sbjct: 14  IPVNRWPLVFAVFAAMAVLFYILEPILLPFVLGALTGYLGDPLVDRVEER-GGSRTFGVI 72

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +    L +V L F     + ++  L+ ++ +       V          +  + L  
Sbjct: 73  LVFLFFTTLSLVALFFAVPVLLQQLDGLIGRIPVLYAWLRDVAVPWLQSRTLVTGANLPQ 132

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              S        S   +    I  I        +   +  L    + +  F+  RD   I
Sbjct: 133 IDWSAQLLENWQSLGKVTATTISRITGSGLGLLLGMANIAL----VPVVAFYLMRDWDDI 188

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++++  L    + A  +++ R   +V+ +   G  I+    G +  +  +LAG+   + L
Sbjct: 189 AERILHLMPKAWQAGTQQMVREADEVVGAFLRGQFIVMCALGALYAAGLYLAGIELALLL 248

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+I  + +++P    I     S+               +     +   I    L P LVG
Sbjct: 249 GLIAGLASIVPYLGFIVGITASLIAAWLQFHEPLPLLYVAAVFGVGQLIESMVLTPVLVG 308

Query: 303 GPIKLPFLPTFFGLVGGVRTMGL 325
             I L  +   F L+ G +  G 
Sbjct: 309 DRIGLHPVMVIFALMAGGQLAGF 331


>gi|261250291|ref|ZP_05942867.1| predicted permease [Vibrio orientalis CIP 102891]
 gi|260939407|gb|EEX95393.1| predicted permease [Vibrio orientalis CIP 102891]
          Length = 363

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 139/359 (38%), Gaps = 4/359 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+     +        +
Sbjct: 6   KITSSHWVLIVALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWLEKRLPNHHNITS 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASEL 122
           +++ + +  + +VPLLF+F   + +       V     + GI        +  G+     
Sbjct: 66  LLSCIVLTFIVVVPLLFVFAAIVQQGSNFSQNVYQWVTNGGIQAIFEHPWVVKGLSLINT 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    +              T+    +   +++       + +    M+  LFF  RD  
Sbjct: 126 YLPFDTIEPQEVAQKVAQFATSFGSNLVGISAKILGDATSFLMDFFLMLFVLFFLLRDHD 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +  +   L  +   K+   + +V +S  +G  + AI +G+  G   WLAG P   
Sbjct: 186 KIISAMRHILP-LSRSQEDKLLDEIEQVSKSAVMGSFLTAIAQGVAGGLGMWLAGFPGLF 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV- 301
              ++     +   G  + +   +IYL + G+   A  L +W    +  +D  LRP L+ 
Sbjct: 245 WGTMMGFASFIPVVGTALIWIPAAIYLYVTGDTTWAIFLTVWSVAIVGSIDNLLRPLLMQ 304

Query: 302 -GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 305 GSGNAGMSTLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQGFLDQQDRS 363


>gi|228910226|ref|ZP_04074044.1| hypothetical protein bthur0013_43740 [Bacillus thuringiensis IBL
           200]
 gi|228923142|ref|ZP_04086433.1| hypothetical protein bthur0011_41220 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228954675|ref|ZP_04116698.1| hypothetical protein bthur0006_40440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960662|ref|ZP_04122307.1| hypothetical protein bthur0005_41240 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048098|ref|ZP_04193671.1| hypothetical protein bcere0027_40710 [Bacillus cereus AH676]
 gi|229071899|ref|ZP_04205110.1| hypothetical protein bcere0025_40660 [Bacillus cereus F65185]
 gi|229081655|ref|ZP_04214150.1| hypothetical protein bcere0023_42850 [Bacillus cereus Rock4-2]
 gi|229111863|ref|ZP_04241409.1| hypothetical protein bcere0018_41070 [Bacillus cereus Rock1-15]
 gi|229129671|ref|ZP_04258639.1| hypothetical protein bcere0015_41130 [Bacillus cereus BDRD-Cer4]
 gi|229146961|ref|ZP_04275325.1| hypothetical protein bcere0012_41000 [Bacillus cereus BDRD-ST24]
 gi|229152594|ref|ZP_04280783.1| hypothetical protein bcere0011_41290 [Bacillus cereus m1550]
 gi|229180666|ref|ZP_04308006.1| hypothetical protein bcere0005_40100 [Bacillus cereus 172560W]
 gi|228602811|gb|EEK60292.1| hypothetical protein bcere0005_40100 [Bacillus cereus 172560W]
 gi|228630855|gb|EEK87495.1| hypothetical protein bcere0011_41290 [Bacillus cereus m1550]
 gi|228636560|gb|EEK93026.1| hypothetical protein bcere0012_41000 [Bacillus cereus BDRD-ST24]
 gi|228653788|gb|EEL09658.1| hypothetical protein bcere0015_41130 [Bacillus cereus BDRD-Cer4]
 gi|228671619|gb|EEL26917.1| hypothetical protein bcere0018_41070 [Bacillus cereus Rock1-15]
 gi|228701659|gb|EEL54150.1| hypothetical protein bcere0023_42850 [Bacillus cereus Rock4-2]
 gi|228711195|gb|EEL63159.1| hypothetical protein bcere0025_40660 [Bacillus cereus F65185]
 gi|228723253|gb|EEL74625.1| hypothetical protein bcere0027_40710 [Bacillus cereus AH676]
 gi|228799026|gb|EEM45998.1| hypothetical protein bthur0005_41240 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228805002|gb|EEM51598.1| hypothetical protein bthur0006_40440 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228836521|gb|EEM81871.1| hypothetical protein bthur0011_41220 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228849390|gb|EEM94226.1| hypothetical protein bthur0013_43740 [Bacillus thuringiensis IBL
           200]
          Length = 361

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVI 349


>gi|312793513|ref|YP_004026436.1| hypothetical protein Calkr_1317 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312875972|ref|ZP_07735961.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797170|gb|EFR13510.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180653|gb|ADQ40823.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 351

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 115/352 (32%), Gaps = 10/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++ + +   +    I+    V++        P L AL + +   P       K   S   
Sbjct: 8   KKYLTDILFMTLIAIVIYFFVNIKAFWPILIPFLIALFLSYLLKPCVDFLEKKVR-SRDI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I+   +  + I+  ++     + E K+L+  V                         
Sbjct: 67  SILISFAIIFGITIMVFVYFIPLFVSETKQLIQNVPEYIALIQKWF---------FEIDS 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L+      + + +                         L  + + I  F+  RD 
Sbjct: 118 KLLNKLNIDIKEILNANSINIEGISKQTLSIFLNIVKSISSNILYYLLIPIISFYILRDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L    +      I   + +V+     G  + A   G++    + +  V   
Sbjct: 178 KRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAFIVGMLSFIGFSILSVRYA 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +    + P ++
Sbjct: 238 ALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDSFIISPRVI 297

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 298 GSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|167578405|ref|ZP_02371279.1| hypothetical protein BthaT_09713 [Burkholderia thailandensis TXDOH]
 gi|167616545|ref|ZP_02385176.1| hypothetical protein BthaB_09603 [Burkholderia thailandensis Bt4]
          Length = 356

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 91/324 (28%), Positives = 160/324 (49%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T ++  L +VP+    
Sbjct: 35  WVIRDFIPAIAWAGVVAIALWPALRRIDALPAFHGRATLVAAALTAAIALLVVVPVAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + + +EL+  +    Q GIPVP  LS +P G   +  W +      +  +   + +K
Sbjct: 95  VEAIEQSRELLGWLHRVEQTGIPVPDALSHLPFGSQQASAWWQA---HLAQPLHPASAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG   +   +   FM++ LF  +R G  +S  L +     F      
Sbjct: 152 GVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGALLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ F
Sbjct: 212 LLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|119491388|ref|ZP_01623407.1| hypothetical protein L8106_14015 [Lyngbya sp. PCC 8106]
 gi|119453383|gb|EAW34546.1| hypothetical protein L8106_14015 [Lyngbya sp. PCC 8106]
          Length = 383

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 107/337 (31%), Gaps = 7/337 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +  + + L+ L+  +     + +++I+      +      +   +     +IA   V+
Sbjct: 7   IGFFCLILALLILWQFRQIVLLIFTSVILAIALNSLVRWLQ-RFRLNRNLAVIIALSLVV 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               +    +    + + ++L+          I     L + P   +  +L  +  + P+
Sbjct: 66  LFGTLFFSLVMPPFLTQFQQLIELAPRGFNQFIRWVDNLLENPPIWFPQQLEFRVPTIPE 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +              +      F    L   L ++ +I+    F  +  +       L
Sbjct: 126 IAQQ------VGPLAQNVLGNFFAFFSNSLTTLLQLLLVIVLTLMFLSNPVAYRTVFVRL 179

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      I      V+     G+ I +I    +      +  +P   A  ++  + 
Sbjct: 180 FPSFYRRRADAILCGCETVLLQWMAGIVINSIFIASLSAIGLLILDIPFVFAHALLAGVF 239

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P +     + + +    + A  + +   +   +      P ++   + L    
Sbjct: 240 NFIPNIGPAASVVFPVSVALLDTPWKALTVIILYIVIQNLESYWFSPMIMQKQVSLLPAA 299

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +   R  G LGL +   L  +  +  +E+IM 
Sbjct: 300 TLTAQIFFARFFGFLGLILALPLAVVSKIWIEEAIMK 336


>gi|302871869|ref|YP_003840505.1| hypothetical protein COB47_1227 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574728|gb|ADL42519.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 351

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 119/352 (33%), Gaps = 10/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +   I    I+     ++        P L AL   +   P      +K   S   
Sbjct: 8   KRYFTDILFIALIAIVIYFFANMKAFWPILIPFLIALFFSYLLKPCVDFLETKIR-SRDI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I+   +  + ++  ++     + E K+L+  V             +          +
Sbjct: 67  SILISFAIIFGITVMVFVYFIPLFVSETKQLIQNVPEYIALIQKWFYEIDSKLLNKLNID 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +     ++  +++ +S+  L                       L  + + I  F+  RD 
Sbjct: 127 IKEILNANSINIEAVSKQTL---------SIFLNIVKSISSNILYYLLIPIISFYILRDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L    +      I   + +V+     G  + A+  GL+    + L  V   
Sbjct: 178 KRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAVIVGLLSFFGFSLLSVRYA 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LGVIT I  +IP   PI  +   + + +  +   A  + ++  +   +    + P ++
Sbjct: 238 ALLGVITGIGNLIPYFGPIFSSIPGVIIALSDSYIKAILVIVFLVLLQQVDSFIISPRVI 297

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  +
Sbjct: 298 GSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKPEE 349


>gi|170743266|ref|YP_001771921.1| hypothetical protein M446_5162 [Methylobacterium sp. 4-46]
 gi|168197540|gb|ACA19487.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 382

 Score =  126 bits (316), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/351 (12%), Positives = 112/351 (31%), Gaps = 8/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ML  +  +   ++ +++  LY L+    P ++   + +   P+      +          
Sbjct: 1   MLQRRATIGLAVLAVVVFLLYELRDVLVPFVAGAALAYVLDPVADRLE-RLGIGRLSATF 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +   ++ L+        ++  L + +         +         G        
Sbjct: 60  LILAVFVLGLLLALIIAVPLAARQIGALAAALPGVVSRIQAIIAE----NAGPLLERAGG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     +        + +  +           +     ++   +  F+   D   +
Sbjct: 116 AGTLQDLQASVGRLVGQAGSFLVNLAGSLWSGSQAVVGILSLLVVTPVVAFYLLIDWDRM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  LD           + I+R + + I S   G +++ +  G       +L G+   V +
Sbjct: 176 TATLDGWVPPRHRDTVRLIARDIDRAITSFIRGQSLVCLLLGTFYALGLFLIGLNFGVLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVS---IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++   +  IP    ++   +S     +    +            +  F+    L+P LV
Sbjct: 236 GLLAGFLTFIPYVGSLTGFLLSTGVAVVQFWPDWPWILATLGVFLVGQFMEGNVLQPKLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  ++L  +   F L+      G LGL +   + A + V+ + ++    E+
Sbjct: 296 GDAVRLHPVWLMFALLAFGSLFGFLGLLLAVPIAAALGVVARFAVRRYLES 346


>gi|257143048|ref|ZP_05591310.1| hypothetical protein BthaA_28058 [Burkholderia thailandensis E264]
          Length = 356

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 5/324 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T ++  L +VP+    
Sbjct: 35  WVIRDFIPAIAWAGVVAIALWPALRRIDALPAFHGRATLVAAALTAAIALLVVVPVAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + + +EL+  +    Q GIP+P  LS +P G   +  W +      +  +   + +K
Sbjct: 95  VEAIEQSRELLGWLHRVEQTGIPMPDALSHLPFGSQQASAWWQA---HLAQPLHPASAVK 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +  F   FG   +   +   FM++ LF  +R G  +S  L +     F      
Sbjct: 152 GVDGGSVVTFGRHFGSRLVHAAVLFGFMLVTLFVIFRAGPRLSGALLTGVRRAFGDSGAA 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   +  T  G+ ++  GEG++LG AY  AG+P    LG++TA+ AM+P  AP+ F
Sbjct: 212 LLQRMAAAVHGTVTGLVVVGFGEGVLLGLAYAFAGLPHAALLGLVTAVAAMLPFCAPLVF 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +++L ++G +  A  L  +GA+ +F+ +  +RP L+G   +LPFL   FG++GG  T
Sbjct: 272 CGAALWLFVQGALGWAIGLAAFGAVVVFVAEHFVRPVLIGSSARLPFLLVLFGILGGAET 331

Query: 323 MGLLGLFIGPVLMALIAVIWKESI 346
            GLLGLF+GP LM ++ V+W E +
Sbjct: 332 FGLLGLFVGPALMTVLTVLWAEWV 355


>gi|145299611|ref|YP_001142452.1| permease PerM [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142852383|gb|ABO90704.1| permease PerM [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 356

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 106/347 (30%), Gaps = 12/347 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +P  +  ++++      L+   G  AP+L AL++ +      S    +   S     
Sbjct: 12  RFSDPDAVTLFLLLVACFAVLWLFGGLLAPLLVALVMAYLLEWPVSRLQ-RAGLSRALAT 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +  + + ++ LL L    + +   L  +      H     R L +    +    L 
Sbjct: 71  SLVLLLFIAVTVMALLGLIPTLVSQGINLAKESPSMLAHVQDYVRTLPEKYPEVIDVTLV 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              + + +   +     L +  +  +               + +I + + +FF  +D   
Sbjct: 131 ETIIDNIRQRILSGGEHLVSASLSSLVNVV--------AILIYLILVPLMVFFMLKDKQE 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L             ++   +   I +   G  I  +  G+     + L G+     
Sbjct: 183 LMGGLRRFLP-RNRTLVNRVWVEMNDQIINYIRGKVIEILIVGVATYIPFALMGLRYSAL 241

Query: 244 LGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L V      +IP     + T     + L   G     T L +   +   +    L P L 
Sbjct: 242 LAVAVGFSVLIPYIGAAAVTVPVAMVALFQWGLTPEFTWLMVAYLVIQALDGNLLVPLLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              + L  +     ++      G  G+F    L  L+  +       
Sbjct: 302 SEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVINAWPKR 348


>gi|153832184|ref|ZP_01984851.1| hipothetical membrane protein [Vibrio harveyi HY01]
 gi|148871495|gb|EDL70350.1| hipothetical membrane protein [Vibrio harveyi HY01]
          Length = 381

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 124/330 (37%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +K F  PV+   II     PI               A    +  + L + PL+ +    
Sbjct: 37  IIKPFILPVIWGAIIAVALMPICKKLERVYGGKRGLAATTIALLGIALLVAPLVMVSGSI 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +      +  +   +         +++ P             +      I +      +G
Sbjct: 97  VDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKAIQTFMPQIKSG 156

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +           L   +S+         F     SI+  L ++         K  + 
Sbjct: 157 LTSLLGMVGGALGSLLLSIISLAIAAG----FMTYSESIASGLRTVAVRTAGDNAKSWTT 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +I  I+ +    A ++   V
Sbjct: 213 LIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILMILCIAQLPALLAVLPV 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             Y+ +  +   AT   +W  +   + +   +P L+G  + +P      G +GG+   G+
Sbjct: 273 VGYMYMTNDTSTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGI 331

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +GLF+G V++A+   ++   +   K  +++
Sbjct: 332 VGLFLGAVILAIWYELFVWWLSIEKAQQQE 361


>gi|110802939|ref|YP_698033.1| permease [Clostridium perfringens SM101]
 gi|110683440|gb|ABG86810.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 391

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 105/336 (31%), Gaps = 16/336 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------------SSTFLAVIA 66
           +   L ++ G   P++  + I F        F  K                  +    + 
Sbjct: 31  VFGGLGYITGLVKPLILGIAIAFVLNIPMKFFERKLFRNLENSKKSWVRSAKRSLSIAVT 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++      +LF+       + +L   +    +        +++              
Sbjct: 91  IIVLIGTISAIILFVVPQLTSSVVKLTESIPTYLKSFEV---NMNNYADSTLLLSKVWDQ 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + +     + + T L      ++           +D+ L+ +  I  L    +    I +
Sbjct: 148 VMNAWQEILKTVTHLFGGLASYLVGLTVDVTTAIIDFFLAFVLAIYMLSSKEKLICQIKK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +           +I +   +V     +G    A+  G +      +  +P    + V
Sbjct: 208 VMYAYLRGDIADKILEIGQTTNRVFSGFIIGQCTEALIIGTLCFLGMLVLRMPYAFLISV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +    ++IP       T  S +L+   N   A    ++      +    + P +VGG + 
Sbjct: 268 LVGTTSLIPILGAFIGTIPSFFLIFIINPIKAFWFIVFIFCLQRVEGDLIYPRVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     ++ G    G +G+ +G    A+I  ++
Sbjct: 328 LSSLWVMLAIMIGGSAFGFIGMLVGVPTAAVIYCVF 363


>gi|167036456|ref|YP_001664034.1| hypothetical protein Teth39_0025 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855290|gb|ABY93698.1| protein of unknown function UPF0118 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 392

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 114/347 (32%), Gaps = 2/347 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 44  LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 103

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L             +   L D     + S
Sbjct: 104 LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRIRMYYIS 163

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++ +      +     +  +   F     ++    +  ++A FF  +D
Sbjct: 164 LPPNITSLIESNMQSIL--NYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 221

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 222 KQLILDFIKRQIPSHWAQHAKSIQVNLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFDY 281

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG++  I+  +P     +         I    +      L     + +V + + P +
Sbjct: 282 PFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVVVVRQIIEPKI 341

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           VG  I L  L T   +  G +  G LGL IGPV + +   + +  I+
Sbjct: 342 VGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKALQRAEII 388


>gi|262377526|ref|ZP_06070748.1| phytochrome sensor protein [Acinetobacter lwoffii SH145]
 gi|262307582|gb|EEY88723.1| phytochrome sensor protein [Acinetobacter lwoffii SH145]
          Length = 509

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 105/344 (30%), Gaps = 17/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +  ++I  +++ +LYF +  F P+  A+++ F   P+ S    +          +   
Sbjct: 16  RMMAGFVIAAVVMTALYFGRDIFIPLALAILLAFLLSPLVSRL-KRWGCPQWAAIGLVMC 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +        +L      ++ +L  ++           + L +   G    +   +   
Sbjct: 75  LTLSFLGGTATYLGV----QLGKLSQELPQYQDTIQQKLKMLENYRQGPSMWDGAIQTFD 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRF---------ASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +      E   +   +  +            A  +    L+    I  + + +     
Sbjct: 131 TVEDSIDTPEQETEDPNVQNVKVVGLEPTSEEAALDWLNKILNPLAIIGIVFLFMVLILF 190

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +G  +  +   L                 K I +      ++ +  G+ +     L GVP
Sbjct: 191 NGKDLHDRFLKLLGGNL-NIGTDALDDAGKSIGTYLRMQLLVNVTYGIPMAIGLLLIGVP 249

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLR 297
           + +  G++  +M  +P   PI      I L                   +   I +  + 
Sbjct: 250 AAIMWGLVAVVMRFVPYVGPIVSAIFPITLAFAVDPGWDMVLWTVALILVLELISNNVIE 309

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P+L G    L  L             G +GL +   L A + V+
Sbjct: 310 PWLYGESTGLSTLAIILAATFWTTLWGPVGLILSTPLTACLLVL 353


>gi|89898842|ref|YP_521313.1| hypothetical protein Rfer_0020 [Rhodoferax ferrireducens T118]
 gi|89343579|gb|ABD67782.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 358

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 150/348 (43%), Gaps = 3/348 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  +++ + +   + L  F+  ++   II     P+Y   +++ +   T  A++  
Sbjct: 13  KNQALLPLMVAVSIALGWILLPFYGTIMWGAIIALLFTPVYRRLLARLKWRRTPAALLTL 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ L ++P   L      E  ++  ++     +     + L D       + L +  L
Sbjct: 73  LLVLLLLVLPFALLTAALAREAAQVYQQLQSGELNPSLYFQGLFDALPDWLTALLDSFGL 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  +L+      L   G  F+   A   G I  ++  S+   +   FF  RDG S+++ 
Sbjct: 133 VNFAALQRRLIAALAQ-GSQFLATQAMGIGQITFEFVTSLFITLYLAFFLIRDGDSVARA 191

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L P + K++      VIR+T  G  ++A+ +G + G A+W  GV   +   V+
Sbjct: 192 LRHAVP-LAPEHKKELIGKFTTVIRATVKGNLLVAVIQGALGGIAFWFLGVGGALLWAVL 250

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A ++++P     + +  V+IY  + G  +    L  WG + + ++D  LRP LVG   +
Sbjct: 251 MAFLSLLPAVGAGLVWLPVAIYFFLTGATWQGIALCAWGVLVIGLIDNLLRPILVGKDTR 310

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +P        +GG+   G+ G  IGP + A+   +W+  +    +   
Sbjct: 311 MPDYVVMITTLGGMVVFGINGFVIGPAIAAMFMAVWEIYVTTRIDPAP 358


>gi|260584950|ref|ZP_05852694.1| membrane protein [Granulicatella elegans ATCC 700633]
 gi|260157380|gb|EEW92452.1| membrane protein [Granulicatella elegans ATCC 700633]
          Length = 391

 Score =  125 bits (315), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 111/326 (34%), Gaps = 5/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F      P++ A I+ +   PI    + K     +   ++  + ++ L +  +       
Sbjct: 53  FFSIIGFPMVGAGILFYMVKPIQDFLVEK-GVHKSVAILLNFILLIVLLLAAIFSFIPIV 111

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +++ELV+++ +  Q        +          E                   L    
Sbjct: 112 EKQLRELVTQLPIYYQIISQQVERVVQSNTFSAVQEQLNGINMDFLQSLGTRVNGLLNVT 171

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I       G   +        M I LF+  +DG  I   +  +           +  
Sbjct: 172 FSGIGNVVGAVGEFMIGIIT----MPILLFYLLQDGEKILPAVLQVFPTRSRKRMSIVLT 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + I S   G   +AI   ++    Y + G+P  V + ++   + +IP          
Sbjct: 228 EMNQQISSYIRGQLTVAIAVAIMFSIGYAIIGLPYGVTIAILAGALNVIPYVGSFFGILP 287

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +    + +    +F+   IE  +  + + P ++G  +++  +     L+   +  GL
Sbjct: 288 ALIVGFVISPWMFVQVFIVFVIEQTLEGRIVSPLILGNSLQMHPVTILVVLLSTGKIFGL 347

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKE 351
           +GL +G    A++ VI        KE
Sbjct: 348 VGLLLGVPGYAVLKVIISHIFDWYKE 373


>gi|238760499|ref|ZP_04621635.1| permease perM [Yersinia aldovae ATCC 35236]
 gi|238701296|gb|EEP93877.1| permease perM [Yersinia aldovae ATCC 35236]
          Length = 354

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 113/350 (32%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I    I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQVIALLAILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 69  AATIVLVVFGSITLLAVFVVAPTVWQQGNNLISDMPKMLNKFNAFAQTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRGKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVLEMVIVGIATYLVFFIMGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF    +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFAAYLVVQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPDEF 349


>gi|238788116|ref|ZP_04631911.1| permease perM [Yersinia frederiksenii ATCC 33641]
 gi|238723703|gb|EEQ15348.1| permease perM [Yersinia frederiksenii ATCC 33641]
          Length = 354

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 116/350 (33%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+ +    LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 10  RRRFADPQVIALLVILLVGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RVGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 69  AASIVLVVFASIMLLAVFVVAPTVWQQGNNLISDMPKMLNKFNAFAQTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRSKLSGMGESVVKISLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVLEMVVVGIATYLVFFVMGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   + + +      A    LF+   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGVGADFWTLFVAYLVVQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|291542731|emb|CBL15841.1| Predicted permease [Ruminococcus bromii L2-63]
          Length = 439

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/359 (12%), Positives = 118/359 (32%), Gaps = 18/359 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIA 66
           ++  ++ ++ G   P     +  +     Y  F SK                     +I 
Sbjct: 29  VVWSAIGWITGIITPFAIGFLFAYILNYPYKFFYSKVFGRMGRKRKFLANFRKPLALIIT 88

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK- 125
              V+ +F+V +  +       +  L++ +         + + +       ++ E+    
Sbjct: 89  YAIVVAIFVVIISIVVPQIAASLFSLINSLPQYAGVLSDMTKTVVHWINHTFSMEIDASE 148

Query: 126 -HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +  + +  L      T+ +           M   +   + +  I+   +F     ++
Sbjct: 149 VINNFFKYITNLISAGNITSFLGNSTNAVFSAIMSTCNGVYNFLLGIVISVYFLAAKETL 208

Query: 185 SQQLDS----LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            +Q+           +     +I  I         +G  I A   G++      +  +P 
Sbjct: 209 CRQIKKLAVAFIPIKYLPKIYEIVDITDTKCGRFLVGDIIDAAFLGVLTFITMSICQLPY 268

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              + V+  +  +IP   P      S ++L+  +        +   I   +     +P +
Sbjct: 269 APLIAVLIGVTNIIPFFGPFIGAIPSAFILLLIDPIYMIIFIIIIVIIQQLDGNLFKPKI 328

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  + L      F ++ G    G+LGL +G  + A+I  +  + +    ++K +I+  
Sbjct: 329 IGSQVGLSSFWVLFSVIVGGGMFGVLGLILGTPIYAVIYALVGKRVKNKIDSKGRIAQE 387


>gi|238782558|ref|ZP_04626589.1| hypothetical protein yberc0001_22080 [Yersinia bercovieri ATCC
           43970]
 gi|238716485|gb|EEQ08466.1| hypothetical protein yberc0001_22080 [Yersinia bercovieri ATCC
           43970]
          Length = 367

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/358 (19%), Positives = 139/358 (38%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L         I+ +I+ S + ++ F      A ++   +WP+              
Sbjct: 7   RRLDLPKLMFGVIFILIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIRLQKILWGKRWL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
            A+I T+ ++ LF++P+  L    +     L+      +   +P   WL  +P  G    
Sbjct: 67  AALIMTLLLVLLFVIPIALLVSSLVQNSGPLIQWASSPSNLRMPDVTWLQSVPMVGNKLY 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   ++   +  I            ++   A+  G     + + +  M++     Y  
Sbjct: 127 SSWHTLIAGGGNAIIAKVQPYVGAAATWLVAQAAHIGY----FLIHLALMVLFSVLLYFH 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+  
Sbjct: 183 GEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQY 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                V+  I  +   G  +      I+L   G+    T L +W  I    +D  LRP+L
Sbjct: 243 ATLFTVLMFICCVAQLGPLLILVPAIIWLYWTGDTTWGTVLLVWSCIV-GTMDNVLRPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 302 IRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESITE 359


>gi|322392109|ref|ZP_08065571.1| membrane protein [Streptococcus peroris ATCC 700780]
 gi|321145009|gb|EFX40408.1| membrane protein [Streptococcus peroris ATCC 700780]
          Length = 369

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 111/337 (32%), Gaps = 6/337 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +  +     P L    + + + PI      + + +     ++    +    ++ 
Sbjct: 29  AIITPFVSVVNTIMIPFLLGGFLYYLTNPIVIFLEKECKINRIIGILLTLFVLFGSIVIG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +++L    + ++  L+S           +   LS  P            +        LS
Sbjct: 89  VVYLLPILINQLSSLISSSQGIYGRLQDLVIELSKYPTFQEID------IQQTIQQLNLS 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              +  N ++ +           +   L II   + L +F  DG      L+        
Sbjct: 143 YVDILQNILNSVTNSVGSVLSALVSTVLIIIMTPVFLIYFLLDGHKFLPMLERSVLKRDK 202

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                + + +   I     G++I A+  G +    Y + G+   +   + + +  +IP  
Sbjct: 203 RNISGLLKNLNSTISRYISGVSIDALIIGCLAYIGYSVIGLRYALVFAIFSGLANLIPYV 262

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       +   +  +        ++  I   +    L P +VGG +K+  +     L+
Sbjct: 263 GPSIGLIPMVISNLFTDPQKMIIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLL 322

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G++G+ +     +++  I K      + +KE
Sbjct: 323 LSSNIYGVVGMIVAVPTYSILKEISKFLARLYENHKE 359


>gi|297529278|ref|YP_003670553.1| hypothetical protein GC56T3_0934 [Geobacillus sp. C56-T3]
 gi|297252530|gb|ADI25976.1| protein of unknown function UPF0118 [Geobacillus sp. C56-T3]
          Length = 353

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 100/327 (30%), Gaps = 11/327 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            + F+     P L A  I +   P+  S   K         ++  +    L    L    
Sbjct: 35  VIDFIATVLTPFLLASFITYLLSPLVESIHRK-GMPRALAILLIYLLFFGLVGYGLYRGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++EL  ++           R + D                     +I +     
Sbjct: 94  PLFIAQLRELDEQLPSLMNTYRQWVRHIHDETSNWPLE----------VHTRIEAMFAEI 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                     A      F+    +++ +   +F+  +D   + + +  +    +      
Sbjct: 144 EQAAAAAVAMAINAAKSFIGSAATLLIIPFIVFYMLKDIDVLKKAVWYMTPKRWRGPGMT 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + +     G   +    GL      WLAG+   + LG +  +  +IP   P+  
Sbjct: 204 FLKDVDESLGGYIRGQLFVCAAIGLAAALGLWLAGMDYPLLLGFVIGVTNIIPYFGPLIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L    ++     + +      F+    L P +VG  + +  L     L  G   
Sbjct: 264 AVPAVILAATVSLKMVVIVLVIIFTLQFLEGNVLSPLIVGKSVHMHPLVIMLALFAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            G+LGL +     A++ V         
Sbjct: 324 AGVLGLILAVPTAAVLKVAIAHWKEHY 350


>gi|89070129|ref|ZP_01157458.1| Lipocalin-related protein and Bos/Can/Equ allergen [Oceanicola
           granulosus HTCC2516]
 gi|89044246|gb|EAR50392.1| Lipocalin-related protein and Bos/Can/Equ allergen [Oceanicola
           granulosus HTCC2516]
          Length = 356

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 115/349 (32%), Gaps = 14/349 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + Q     +   +  V L+FL     P L      +   P+      +      F  +  
Sbjct: 6   STQARYWGIAALVFAVVLWFLGDALTPFLLGGAFAYILDPVADRLE-RLGMRRLFAVITI 64

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           TV  + +F++ +L +    + ++ +L+                         A       
Sbjct: 65  TVLAILVFVLLVLLVVPTLVRQLTQLIETAPELFIRLRDWLA----------ARFPDLVD 114

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                  ++ S           +   A    + F++  + ++ + +  F+   D   +  
Sbjct: 115 EGSTIRQQLASIGETIAARGGEMLSAALSSALSFVNVLVLLVIVPVVTFYLLLDWDRMVA 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++D+L         ++++  + + + S   G  ++ + +G     +  L G+   V +G 
Sbjct: 175 RIDTLLPREHAPTIRRLASEIDETLSSFIRGQGLVMLIQGTFYAVSLMLVGLQFGVVVGA 234

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
              ++  IP    I   A++I L      G       +        F+    L P LVG 
Sbjct: 235 FAGLVTFIPYVGAIVGGALAIGLALFQFWGEWHMIALVAAIFFGGQFLEGNILTPLLVGD 294

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + L  +     L       G +GL +   + A++ V+ + +      +
Sbjct: 295 SVGLHPVWLLLALAIFGAIFGFVGLLVAVPVAAMLGVLTRFATAQYMRS 343


>gi|228987642|ref|ZP_04147756.1| hypothetical protein bthur0001_43120 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772102|gb|EEM20554.1| hypothetical protein bthur0001_43120 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 361

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFIGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQI 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLVKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPVLAVIRTVI 349


>gi|168216347|ref|ZP_02641972.1| putative membrane protein [Clostridium perfringens NCTC 8239]
 gi|182381331|gb|EDT78810.1| putative membrane protein [Clostridium perfringens NCTC 8239]
          Length = 366

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILTVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +L       + EL+  +     +   +   +            +  H     +  I    
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTNYVQNLFTEIMASFKVPEGINSYLPHGDT--NKLITFIG 151

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + T   +++   A       +++    +  I  L    +     S+    +        
Sbjct: 152 SMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKDLGNE 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   P
Sbjct: 212 ILEFIKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V  ++ +  +   A  + ++  I        L P L+G  + L       G+  G
Sbjct: 272 FIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTLG 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G +G+ +G  +M++I +   + I   +   E
Sbjct: 332 GAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|268316275|ref|YP_003289994.1| hypothetical protein Rmar_0708 [Rhodothermus marinus DSM 4252]
 gi|262333809|gb|ACY47606.1| protein of unknown function UPF0118 [Rhodothermus marinus DSM 4252]
          Length = 429

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 108/327 (33%), Gaps = 5/327 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P + A ++ + S P+      +        A+  TV V+      LL L    + 
Sbjct: 91  RVVLIPFVVAYLLAYLSNPLVDLLERRLHVPRWVSALTVTVLVVGALAAILLLLIPTIVG 150

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++ EL+ +++ +             +        +  + L    +  +  +    T  + 
Sbjct: 151 QLVELIRQMLNSVGELRRWLYENPLLDRLEEVLPIDRQALIQQFTTFLQQQLNALTQSLP 210

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                 ++     L     +  + + +F+  +D   +   L  L                
Sbjct: 211 DALATVAQSIGSLLGALTVLAILPMLIFYTLKDYPKLRDALIGLFPKHNGRR--DYLMYA 268

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVS 266
             V+ +   G  +I++     +  A  +  VP  + +G++  ++ +IP    +       
Sbjct: 269 GTVVGNYLRGQLLISLIAAFNVSVALLIFDVPFGLLIGLLAGLLNLIPNLGAVLTNIIAL 328

Query: 267 IYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +  L+ G+      + + G +     +    L P ++   + L  +     L      +G
Sbjct: 329 LIALLFGDPPLLDAVIVTGVLLGQGLLEASVLSPHILSHQVGLHPVLILLSLFVFGYFLG 388

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
             GL I     A++   ++    A ++
Sbjct: 389 AFGLLIAVPTTAILVGFYQSYREAREK 415


>gi|315443121|ref|YP_004076000.1| permease [Mycobacterium sp. Spyr1]
 gi|315261424|gb|ADT98165.1| predicted permease [Mycobacterium sp. Spyr1]
          Length = 391

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 126/349 (36%), Gaps = 5/349 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N +  +  + +  +    YFL+ +   +  + ++ +   P+Y    ++        A   
Sbjct: 8   NQKRALAVLTVVALGFGAYFLRNYVLLIAVSAVLAYLFSPLYRRLRTRMG--PGAAAATT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTK 125
             + + +  +PL  + +   L++ E+V+ +    +   +               + +   
Sbjct: 66  LFAAIAVVALPLTGVLFLAFLQISEMVTGIGHWVEQTDLTALGQRLLDSANELLARVPFA 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +        +   L  N  +    FA       +     +I  +        +G  + 
Sbjct: 126 DFTLTPESVRDAIGRLGQNAGEIALGFARDSVGGIVSTVTGVIIFLYVFLALLTNGDKVL 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L   L           +  ++ +T  G  IIA  +G+    + ++AG+ +   + 
Sbjct: 186 DLFRDLNP-LGDKVSDIYLAKIGAMVSATVKGQFIIAACQGVAGAISVYIAGIHNGFFMF 244

Query: 246 VI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VI   +++ IP G+ I    + I + I GN      + ++  I    +D  LRPFLV   
Sbjct: 245 VIFLTVLSFIPLGSGIVVIPLGIGMAIFGNPVGGIFVVVFHIIATTNIDNLLRPFLVPRS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L        +  G++  G +G+ +GPVLM +I        +  ++  
Sbjct: 305 AHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYRVVYRDAP 353


>gi|323136904|ref|ZP_08071984.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322397665|gb|EFY00187.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 386

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 136/348 (39%), Gaps = 5/348 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     I  ++I F+   +   ++ F A ++ ++++     P++              A 
Sbjct: 21  MFIELSIRLFVIGFLAYWTFIIIQPFAAMIVWSVVLAVAFDPVFEKVSGWLGGRPILAAA 80

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T++ + L I P+ ++    +  +K +++     +    P P  + D P        + 
Sbjct: 81  LMTIAGLVLIIGPVTWMGVGVIDPLKGVLAGFENGDLSVPPPPEAVKDWPLIGDWLFSYW 140

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +  S      +           +++   A   G+  L + LS+        F    G  +
Sbjct: 141 ELASTNIHGALAQILPQLKPVGEYLLAGARNAGLGTLKFLLSVALAG----FLLASGPQL 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + +L   + P    K   +    I +   G+  +++ + ++ G    LAGVP    L
Sbjct: 197 LVGIRALARRIDPTNGDKFVNLAGDTINAVSRGVMGLSLMQAVIGGLGMSLAGVPGASLL 256

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +   ++ ++  G  +    V  +         A  L +  A   ++ D  L+PFL+   
Sbjct: 257 TLAILVLGIVQIGPLLIVAPVIFWAWTHMTTGPALALTICMATVNYM-DNVLKPFLLAHG 315

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +  P    F G++GGV   G+ GLF+GPV++A++  + K  I    + 
Sbjct: 316 LSTPMGVIFIGVIGGVLAHGVAGLFVGPVVLAVVWELGKAWIADDLDE 363


>gi|295397298|ref|ZP_06807392.1| protein of hypothetical function UPF0118 [Aerococcus viridans ATCC
           11563]
 gi|294974449|gb|EFG50182.1| protein of hypothetical function UPF0118 [Aerococcus viridans ATCC
           11563]
          Length = 406

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 57/362 (15%), Positives = 123/362 (33%), Gaps = 16/362 (4%)

Query: 10  GIMRWMIMFIILVS-----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------- 55
            ++   I+ +I  S     ++ +     P++   ++ F    + +               
Sbjct: 16  ALIAVFILVVINWSYLVQTVFMIWSVIFPLILGGMVAFVLNLLMTWLEKYLYPKATNKYI 75

Query: 56  -EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI- 113
                    ++A + V  +    ++ +       +  L+  +    Q+          + 
Sbjct: 76  KGSRRPVAIILAILIVCLVIAATVVIVVPQLASAVMTLIDVIPETVQNLTDWFNRQEALV 135

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P     +           S        L +N         +       +  L I+F I  
Sbjct: 136 PLVNELANQVNIDWGSMFSSVASGINSLASNVATTSVSVLTTSVGAVTNIFLGILFAIYI 195

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF   +    + + L            + ++R+  +       GM I +I  G ++    
Sbjct: 196 LFSKEKLAKQVDRLLTVYVRDDIHQLIENVARVANETFAKFISGMVIESIILGTLVTVGL 255

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           ++  VP    LGV+  +MA+IP        AV + +L+  N   A    ++      +  
Sbjct: 256 FILQVPYAAMLGVLQGVMALIPIIGAFLSGAVGVLILLALNPTYALIYLIFVLFVQQLEG 315

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P +VG  I LP +   F +  G   MG+ G+ IG  ++A I  I K  +   ++ +
Sbjct: 316 DLIYPRVVGDSIGLPSMWVLFAVTVGGGLMGIPGMLIGVPVLASIYKIIKIDVKYREQVR 375

Query: 354 EK 355
           ++
Sbjct: 376 QE 377


>gi|317128236|ref|YP_004094518.1| hypothetical protein Bcell_1524 [Bacillus cellulosilyticus DSM
           2522]
 gi|315473184|gb|ADU29787.1| protein of unknown function UPF0118 [Bacillus cellulosilyticus DSM
           2522]
          Length = 358

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 118/331 (35%), Gaps = 11/331 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L  +     P L A +I +   P+  +   K+    +   ++   + + LF++ L    
Sbjct: 35  FLVLIGRIITPFLLAAVIAYLLHPLIEAL-KKRNIPKSLSILLIYAAFVILFVIVLFRGT 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
            Y + E +EL+ ++ +  Q        +             T+ L      ++       
Sbjct: 94  PYILEEGQELLDQLPVMAQTYTDFANTI----------HAQTEVLPSTFQEQVEGWMESG 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I               D+ L +I +   +F+  +D   + +    +    +      
Sbjct: 144 EAYIAESITSIGLIIRQLFDWMLLLIVIPFIVFYLLKDMDLVKKVCWYITPDRWRKEGAS 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   + +   G  ++ I  G++    +W+  +P  V L V   +  +IP   PI  
Sbjct: 204 LVKEIDHSLGNYIRGQILVCIVVGILAYIGFWIIDMPYAVLLAVFIGLTNIIPYFGPIIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +++ +  +        +   I   I    + P +VG  + +  +   F LV G   
Sbjct: 264 VIPVVFIALTESFQLVILGLIVNFIVQIIEGNLIAPLIVGKTLHMHPVLIIFALVVGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G++GL I   ++ ++ VI       ++E K
Sbjct: 324 GGVIGLIISVPILTVLRVILLHIRQIVRERK 354


>gi|113868389|ref|YP_726878.1| permease [Ralstonia eutropha H16]
 gi|113527165|emb|CAJ93510.1| predicted permease [Ralstonia eutropha H16]
          Length = 367

 Score =  125 bits (315), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 131/345 (37%), Gaps = 3/345 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  + +      + F   ++ ++I+  T +P+      +        A +  ++ 
Sbjct: 20  IRAGLIAVLAIFCFRIFRPFLDLIVWSVILAVTIYPLQVRLRRRLGNKDGRAATLIVLAA 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  +P   L    +  M+  ++ V     H  P    ++  P             +  
Sbjct: 80  IAIIALPAYLLGAAMIDSMENAIAIVKSEGIHIPPPHESVASWPLVGQRLYDLWLQAASD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  + +           +   A+  G   L +  ++I   I + +      S  Q    
Sbjct: 140 LASVVQTLAPQIKEISLAVLAAAAGIGKGLLIFVFALIIGGIFMAYGEAGNRSTVQIASR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +         ++I+ +    IR+   G+  IA  + L++G  + + GVP+   L +   +
Sbjct: 200 IFGL---ERGQRIATLCTATIRAVAQGVVGIAFIQMLLIGIGFVIKGVPAAGVLAMAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +    A +    V IY+        AT +F        + D  L+P L+G  + +P  
Sbjct: 257 LGIAQLPATLITVPVIIYVFATEGASVATIVFAIYVFVAGLADNVLKPLLLGRGVDVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               G +GG+ T G++GLFIGPV++A+   ++ + +       + 
Sbjct: 317 VVLIGALGGMVTGGVIGLFIGPVVLAVGYQLFWQWVEDPPPQADP 361


>gi|225874023|ref|YP_002755482.1| hypothetical protein ACP_2444 [Acidobacterium capsulatum ATCC
           51196]
 gi|225792597|gb|ACO32687.1| putative membrane protein [Acidobacterium capsulatum ATCC 51196]
          Length = 642

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 105/363 (28%), Gaps = 38/363 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +++ +LYF +  F P+  ALI+ F   P+      +     T   ++  +       +
Sbjct: 22  LALVIAALYFGRDIFIPLAMALILSFLLTPLAERVEHRLHLRRTPSVILVAIVAFGCMAI 81

Query: 77  PLLFLFYYGMLEMKEL---------------------VSKVVLANQHGIPVPRWLSDIPG 115
               +    +  +  L                     V++ V + Q         +  P 
Sbjct: 82  IGWVVAAQLLTVVDALPNYRDNIQAKIDAIHAPAKGPVAQAVRSIQEISNALSSGAPQPA 141

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFI---------------PRFASRFGMIF 160
                +L +        L+         +  +                   +     +  
Sbjct: 142 PAPEVQLPSFRRMTRADLEKEILRLQAESQANTNKGPTPVMVVSPPVSETAYLGTILLPV 201

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +     +  M++   +       +  ++  L          +      + I        +
Sbjct: 202 VKPLGILAAMLVFTVYMLLRREDLRNRVLLLAGVGHINVMSQALNDAAERISRYLRMNVL 261

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNA 278
           +  G G V+G   +L  VP+    GV+  +M ++P     +  +V+    L +    ++ 
Sbjct: 262 VNAGFGAVVGIGLYLLHVPNATLWGVLVGLMRLVPYFGIWAAGSVTFIFTLAVFPGWWHP 321

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +       ++     P+  G    +  L      +      G  GL +   L   +
Sbjct: 322 LFVAMMLVAIELLISNFFEPWFYGSHTGVSSLALLVSAIVWTILWGWAGLILSTPLTVCL 381

Query: 339 AVI 341
            VI
Sbjct: 382 IVI 384


>gi|241664037|ref|YP_002982397.1| hypothetical protein Rpic12D_2453 [Ralstonia pickettii 12D]
 gi|240866064|gb|ACS63725.1| protein of unknown function UPF0118 [Ralstonia pickettii 12D]
          Length = 356

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 109/340 (32%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +  + L  L  L     P + A I+ +   P        +         + 
Sbjct: 10  TKRTLAWIAVALVFLALLKALAPTLTPFVFAFILSYILHPGVEWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  + +  +L +      E+  +  ++                 P         +  
Sbjct: 69  ILVLTVVGVALMLLILAVLQREIPAIREQLPGMLAKLNAFLS-----PKLDELGLHVSFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               ++L          + +  +  +    G   +        + I +F+   D   + +
Sbjct: 124 FPGLRALLTEQLAASPDDVVARVLTYLRVSGSAAVQVLGLFFLVPIVMFYLLMDWNMLMR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++++     +    ++++     ++     G  I+ +   +   +   LAG    + +G+
Sbjct: 184 RVETAVPRRWLPKARELAAETDGLLSQYLRGQIIVMLVLAVYYSAGLALAGFDVALPVGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I       GN++    + +   I  F+    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGVGLTLAILAALLQFGNLYGLLAVAVVYGIGQFLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPMSAVLLVGLRQ 343


>gi|312865058|ref|ZP_07725286.1| putative membrane protein [Streptococcus downei F0415]
 gi|311099169|gb|EFQ57385.1| putative membrane protein [Streptococcus downei F0415]
          Length = 392

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 116/337 (34%), Gaps = 10/337 (2%)

Query: 32  APVLSALIIGFTSWPIY--------SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
            P ++   + +    +           F            +++ ++ + +  +    +  
Sbjct: 52  MPFVAGAGLAYVVNIVMSGYEHLMKKIFRRDIPGKRALSLILSYLTFVIVIFLIFSIVLP 111

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-WTKHLSHPQSLKILSETFLK 142
             +  +K LVS  +      +   +  S++   M   ++   K++SH  +      +   
Sbjct: 112 DLINSLKALVSIDIEGLGKLVNNVQKDSNVQRFMRYFDIDLNKNVSHLLNQYNRQISTTV 171

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +  +    +      +   +S++F I  L    + G   +  + +   H +   +  
Sbjct: 172 IGILTNLLTSVTNLASGLISLFISLVFSIYVLAGKEKLGRQGNMLVHAYLPH-YEKKFHY 230

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + ++  +     F+G T+ A   G +      +  +P    +G++    A+IP   P   
Sbjct: 231 VRKVAHESFHGFFVGQTLEASILGSLCALGMLIFKIPYPGTIGILVGFTALIPVIGPYIG 290

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            ++   L+   ++  A    ++  I        + P +VG  I LP +     +  G   
Sbjct: 291 LSIGAILIATQSVPQAIFFVIYLIILQQFEGNLIYPRVVGHSIGLPPMWVILAITIGASF 350

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G+LGL I     A I  + +  +   K  + +    
Sbjct: 351 WGVLGLLIAVPSAATIYKLIRNQVYTKKARETEQKKE 387


>gi|56421092|ref|YP_148410.1| hypothetical protein GK2557 [Geobacillus kaustophilus HTA426]
 gi|56380934|dbj|BAD76842.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 353

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 101/327 (30%), Gaps = 11/327 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            + F+     P L A  I +  +P+  S   K         ++  +    L    L    
Sbjct: 35  VIDFIATVLTPFLLASFITYLLYPLVESIHRK-GMPRALAILLIYLLFFGLVGYGLYRGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++EL  ++           R + D                     +I +     
Sbjct: 94  PLFIAQLRELDEQLPSLMNTYRQWVRHIHDKTSNWPLE----------VHTRIEAMFAEI 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                     A      F+    +++ +   +F+  +D   + + +  +    +      
Sbjct: 144 EQAAAAAVAMAINAAKSFIGSAATLLIIPFIVFYMLKDIDVLKKAIWYMTPKRWRGPGMT 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + +     G   +    GL      WLAG+   + LG +  +  +IP   P+  
Sbjct: 204 FLKDVDESLGGYIRGQLFVCAAIGLAAALGLWLAGMDYPLLLGFVIGVTYIIPYFGPLIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L    ++     + +      F+    L P +VG  + +  L     L  G   
Sbjct: 264 AVPAVILAATVSLKMVVIVLVIIFTLQFLEGNILSPLIVGKSVHMHPLVIMLALFAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            G+LGL +     A++ V         
Sbjct: 324 AGVLGLILAVPTAAVLKVAIAHWKEHY 350


>gi|284035595|ref|YP_003385525.1| hypothetical protein Slin_0663 [Spirosoma linguale DSM 74]
 gi|283814888|gb|ADB36726.1| protein of unknown function UPF0118 [Spirosoma linguale DSM 74]
          Length = 373

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 117/332 (35%), Gaps = 18/332 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             + + I+ V++Y  +    P+  + ++     P+    I           VIA    + 
Sbjct: 16  SLLSLAILTVAIYLGQDILVPLAMSGLVAVLLRPVEDRLIRLGIHK-----VIAISLALL 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L IV +  +     +++ +    +    Q+               +      +     ++
Sbjct: 71  LAIVIVAGVTIILSMQLSDFADDLPKIRQNLADFFSDAKRWVRREYNVSYRQQEQYLKKA 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                ++    + + FI        ++ +   L                  +   +  L 
Sbjct: 131 QAQTLDSLQSPDTLGFITGPLGTLTLVPIYVFL-----------LLYYRTMLLHFVVVLF 179

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   +++   V  VI+S  +G+ I       +      + GV   + LG++ AI+ 
Sbjct: 180 AEKHTNNVREVLGEVKSVIQSYMVGLLIETACVAALNSVGLLILGVQYSILLGIMAAILN 239

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++P    +  T +++ +    N   +    + +   +  FI +  L P +V   +++  L
Sbjct: 240 LVPYIGGLVATVLTVIITFSNNPETSIILGVVIVFLVVQFIDNNVLVPLIVASKVRINAL 299

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +  G++ G    G+ G+F+    +A++ VI+
Sbjct: 300 VSIVGVLIGGALAGVSGMFLSIPAIAILKVIF 331


>gi|228941558|ref|ZP_04104107.1| hypothetical protein bthur0008_41950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974488|ref|ZP_04135055.1| hypothetical protein bthur0003_42410 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981082|ref|ZP_04141383.1| hypothetical protein bthur0002_42430 [Bacillus thuringiensis Bt407]
 gi|228778623|gb|EEM26889.1| hypothetical protein bthur0002_42430 [Bacillus thuringiensis Bt407]
 gi|228785205|gb|EEM33217.1| hypothetical protein bthur0003_42410 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818114|gb|EEM64190.1| hypothetical protein bthur0008_41950 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 361

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTRMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVI 349


>gi|261418426|ref|YP_003252108.1| hypothetical protein GYMC61_0960 [Geobacillus sp. Y412MC61]
 gi|319767614|ref|YP_004133115.1| hypothetical protein GYMC52_2592 [Geobacillus sp. Y412MC52]
 gi|261374883|gb|ACX77626.1| protein of unknown function UPF0118 [Geobacillus sp. Y412MC61]
 gi|317112480|gb|ADU94972.1| protein of unknown function UPF0118 [Geobacillus sp. Y412MC52]
          Length = 353

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 101/327 (30%), Gaps = 11/327 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            + F+     P L A  I +  +P+  S   K         ++  +    L    L    
Sbjct: 35  VIDFIATVLTPFLLASFITYLLYPLVESIHRK-GMPRALAILLIYLLFFGLVGYGLYRGV 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++EL  ++           R + D                     +I +     
Sbjct: 94  PLFIAQLRELDEQLPSLMNTYRQWVRHIHDETSNWPLE----------VHTRIEAMFAEI 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                     A      F+    +++ +   +F+  +D   + + +  +    +      
Sbjct: 144 EQAAAAAVAMAINAAKSFIGSAATLLIIPFIVFYMLKDIDVLKKAVWYMTPKRWRGPGMT 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             + V + +     G   +    GL      WLAG+   + LG +  +  +IP   P+  
Sbjct: 204 FLKDVDESLGGYIRGQLFVCAAIGLAAALGLWLAGMDYPLLLGFVIGVTNIIPYFGPLIG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L    ++     + +      F+    L P +VG  + +  L     L  G   
Sbjct: 264 AVPAVILAATVSLKMVVIVLVIIFTLQFLEGNILSPLIVGKSVHMHPLVIMLALFAGGEL 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            G+LGL +     A++ V         
Sbjct: 324 AGVLGLILAVPTAAVLKVAIAHWKEHY 350


>gi|296140794|ref|YP_003648037.1| hypothetical protein Tpau_3110 [Tsukamurella paurometabola DSM
           20162]
 gi|296028928|gb|ADG79698.1| protein of unknown function UPF0118 [Tsukamurella paurometabola DSM
           20162]
          Length = 414

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 98/322 (30%), Gaps = 14/322 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++F+++  +        PV+ A+++    WP       +             +
Sbjct: 39  RIVAVAAMLFVVVWVIGEFWSILLPVMLAVLLCTVLWPPVRWLRDR-GFPPALATATVLL 97

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  +      + +++    V   +      +                    
Sbjct: 98  LALGILGGIIGAIAPSITSQSQQIADSAVAGVRKIQEWVQ------------GPPLNLQD 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S  + S T    +  + I               ++++ + +  FFF +DG      +
Sbjct: 146 EQISNFVNSITQKLQSSAESIASGVFTGVSAAGSVVVAVVMVAMLTFFFLKDGDKFLPWM 205

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     +  ++   +   +        ++++ + + +G    +  VP   AL VIT
Sbjct: 206 RRHSGTPISEHLVELLSRIWATLGGFIRTQALVSLIDAVFIGLGLVILDVPLAYALAVIT 265

Query: 249 AIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP        A+++ + +       A  + L       +    L P L    + L
Sbjct: 266 FLGGFIPIVGAFVAGALAVVVALVTNGFTTALLVLLVVIAVQQLEGNVLSPMLQSRSMNL 325

Query: 308 PFLPTFFGLVGGVRTMGLLGLF 329
             +     +  G    G++G F
Sbjct: 326 HPVVVLLAIAFGGTQFGIIGAF 347


>gi|292491897|ref|YP_003527336.1| hypothetical protein Nhal_1828 [Nitrosococcus halophilus Nc4]
 gi|292491913|ref|YP_003527352.1| hypothetical protein Nhal_1847 [Nitrosococcus halophilus Nc4]
 gi|291580492|gb|ADE14949.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
 gi|291580508|gb|ADE14965.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 371

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 111/357 (31%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    NPQ     +++ +   ++ F+    APVL++L+I +    I      ++      
Sbjct: 9   QRHFSNPQVAGLALLLVVSFATVIFMGHILAPVLASLVIAYLLEGIVGYLERRR-CPRWL 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  V+ M  F   +  +      ++ +    +      G  +   L +    +++  
Sbjct: 68  AVPLVFVAFMVAFFGDIFGVIPLLSQQVTQFFQLLPTMIARGHELLLSLPEHYPDLFSEA 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +S                    +  ++       +   + ++ + + +FFF +D 
Sbjct: 128 QVNNLVSAIHVE--------VAQLGQEVLSWSLASVTSLITLGMYLVLVPLLVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +   S           ++   V   I +   G  I  +    V    +++ G+   
Sbjct: 180 DRLIEWCKSYLPQE-RKLIAEVWGEVDFQIANYVRGKCIEILIVWAVSFITFYVLGLRFS 238

Query: 242 VALGVITAIMAMIPGGAP--ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP      I+     +     G       +     I  F+    L   
Sbjct: 239 MLLSVLMGLSVLIPYIGAMAITLLVAFVAYFQWGLSTEFAEVLGACVIIQFLDGNVLATL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     +V      GL GLF    L  +I  + K         +   
Sbjct: 299 LFAEVVDLHPVAVIVAIVVFGGVWGLWGLFFAIPLATIIQAVLKAWPKVPPVEERPP 355


>gi|229019611|ref|ZP_04176424.1| hypothetical protein bcere0030_41130 [Bacillus cereus AH1273]
 gi|229025850|ref|ZP_04182248.1| hypothetical protein bcere0029_41410 [Bacillus cereus AH1272]
 gi|228735461|gb|EEL86058.1| hypothetical protein bcere0029_41410 [Bacillus cereus AH1272]
 gi|228741691|gb|EEL91878.1| hypothetical protein bcere0030_41130 [Bacillus cereus AH1273]
          Length = 361

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  V         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYVLFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PIVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFGGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPVLAIIRTVI 349


>gi|328884744|emb|CCA57983.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 480

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 101/321 (31%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R ++    +  L  +           ++AL++     P   + + +K         +  
Sbjct: 112 WRLLVFAGTVWVLMKVISSVQLVVLAFVAALLVTALLQPTV-ALLRRKGLPRGLATAVTA 170

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           VS   +  +   F+ +  M  +  L  +V    +                W  +      
Sbjct: 171 VSGFVVMGLVGWFVVWQVMDNIDTLSDRVKDGIEELKR------------WLLDSPFHVT 218

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    + +       + I     +   + ++    I+  + +  F   DG  + + 
Sbjct: 219 EQQINDIAKNLSDTIGANAEQITSAGLQGVTVVVEAMTGILLAMFSTLFLLYDGKKVWEW 278

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  ++A+ + + +G   W   VP  V L V 
Sbjct: 279 TLKLVPAQARPGVAGAGPRAWRTLTAYVRGTVLVALIDAVFIGLGLWFLEVPMAVPLAVF 338

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   +F A  + +       I    L+PF++G  ++
Sbjct: 339 IFLFAFIPLVGAVVSGALAVVVALVTNGVFTALMVLVVVLAVQQIEGHVLQPFILGRAVR 398

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G  T G+ G
Sbjct: 399 VHPLAVVLAVAAGGLTAGIGG 419


>gi|229032040|ref|ZP_04188023.1| hypothetical protein bcere0028_40850 [Bacillus cereus AH1271]
 gi|228729285|gb|EEL80279.1| hypothetical protein bcere0028_40850 [Bacillus cereus AH1271]
          Length = 361

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQSLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEI 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVI 349


>gi|254503591|ref|ZP_05115742.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222439662|gb|EEE46341.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 367

 Score =  125 bits (315), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 127/341 (37%), Gaps = 5/341 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   ++      SL  +  FFA +L A+++    +P Y+    K        A I T+ 
Sbjct: 29  AIRLGVLGVFAYFSLQLVAPFFAFLLWAVVLTVALYPAYAWLTGKLGGRKVLSATILTLI 88

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I P+  L    +  ++     V        P+P  L+++P        + +  S 
Sbjct: 89  GLGIVIGPVAVLVVSLVETLQRFYEGVTSGAISVPPLPPKLAELPMVGEKIAEFWQLASQ 148

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +     +       I    +      L +       II     +  G +++    
Sbjct: 149 SLEQFLTKIGPMVAPAGTKILSVLASLSGSVLFFI----VSIILSGCLFVPGPALASGAK 204

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
              + +      +   +    IR+   G+  +A+ +GL+ G       VP    L     
Sbjct: 205 RFADRIIAPRGGEFVDLAGATIRNVSRGVIGVAVIQGLLTGVILIAFAVPLAGLLTFAAL 264

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ +I  G  +      I+      +  A  LF    + + +VD  LRP L+   + +P 
Sbjct: 265 ILCIIQIGPALVILPTIIWTWSSWELLPAL-LFTVLIVPVMLVDNVLRPILMSRGLDVPM 323

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L    G++GG    GL+GLF+GPV++++   +    + A +
Sbjct: 324 LVILIGVLGGTLAYGLIGLFLGPVILSVFYELVIAWVKAGE 364


>gi|227872737|ref|ZP_03991061.1| possible permease [Oribacterium sinus F0268]
 gi|227841415|gb|EEJ51721.1| possible permease [Oribacterium sinus F0268]
          Length = 404

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 107/353 (30%), Gaps = 20/353 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSS------------FISKKEESSTFLAVIATVSVMCL 73
                  P++   ++ +   P+Y+             F  K ++ ST  + +ATV  +  
Sbjct: 42  LFIQILMPIIYGAVLAYLMSPVYNFVVKISEVLLVKLFRKKSKKQSTASSFLATVCSLLF 101

Query: 74  FIVPLLFLFYYGMLEMK--------ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    L    + E+          L   +  + +    +     +  G +        
Sbjct: 102 LTLIGGSLVSLLIPELTKSIYNLYMTLPDAINRSYERIQTLLTNYPEARGYVEDLYTEIS 161

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                +     +      N   F          +  +  + +I M+  L           
Sbjct: 162 AFFSSKPESAQTILGHLQNIAAFFRDGIWNTFTVVKNILIGLIVMVYLLNLKKTLKLQFR 221

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L ++          +  + V K+     LG  I ++  G++      +  +P  + + 
Sbjct: 222 KLLFAIFSKEKAKGIIEELQYVHKMFGGFILGKIIDSVIIGILTFFVLSIMKMPYTLLVS 281

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           VI  +  ++P   P       I L++  +   A    +       +    + P ++G   
Sbjct: 282 VIIGVTNVVPFFGPFVGAIPCIILIMLSSPLQALYFAIAILAIQQLDGNVIGPKILGDST 341

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L      F ++      G +G+ I   L A+I    +       E K+  + 
Sbjct: 342 GLSSFWVLFSIILFGGLFGFVGMIIAVPLWAVILNSIRRYANKRLEKKQIPNQ 394


>gi|168243266|ref|ZP_02668198.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|168466761|ref|ZP_02700615.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195630801|gb|EDX49393.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|205337593|gb|EDZ24357.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 355

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 348


>gi|309781371|ref|ZP_07676107.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Ralstonia sp. 5_7_47FAA]
 gi|308919784|gb|EFP65445.1| phosphoribosylaminoimidazole-succinocarboxamide (SAICAR) synthetase
           [Ralstonia sp. 5_7_47FAA]
          Length = 356

 Score =  125 bits (314), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 109/340 (32%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +  + L  L  L     P + A I+ +   P        +         + 
Sbjct: 10  TKRTLAWIAVALVFLALLKALAPTLTPFVFAFILSYILHPGVEWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  + +  +L +      E+  +  ++                 P         +  
Sbjct: 69  ILVLTVVGVALMLLILAVLQREIPAIREQLPGMLAKLNAFLS-----PKLDELGLHVSFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               ++L          + +  +  +    G   +        + I +F+   D   + +
Sbjct: 124 FPGLRALLTEQLAASPDDVVARVLTYLRVSGSAAVQVLGLFFLVPIVMFYLLMDWNMLMR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++++     +    ++++     ++     G  I+ +   +   +   LAG    + +G+
Sbjct: 184 RVETAVPRRWLPKARELAAETDGLLSQYLRGQIIVMLVLAVYYSAGLALAGFDVALPVGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I       GN++    + +   I  F+    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGVGLTLAILAALLQFGNLYGLLAVAVVYGIGQFLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPMSAVLLVGLRQ 343


>gi|312797187|ref|YP_004030109.1| hypothetical protein RBRH_01983 [Burkholderia rhizoxinica HKI 454]
 gi|312168962|emb|CBW75965.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 363

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 115/326 (35%), Gaps = 3/326 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           SLY +  F   ++ A +I   +WP+      +          +   +++ +  +PL    
Sbjct: 27  SLYIMSPFLPALIWATMIVVATWPLMRGAQERLGGRRGRATALMLAALLIVIALPLYGAV 86

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                    ++        +    P   + +       E  T          +       
Sbjct: 87  VAIAAHADTILQYARALPDYRPAPPP--AWLHEVPLIGERITSAWQRLTHAGVDGLLEFV 144

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               D   ++            + ++  +I     Y  G + +  +      L       
Sbjct: 145 APYADTGAKWMVSHATAVGGVLIHLLLTLILCGVLYMHGETAAGAVRRFAYRLADERGTA 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R+  + IR+  LG+ + A  +  + G   + AG+P    +  IT I+ +   G  +  
Sbjct: 205 AVRLAGQAIRAVALGIVVTAAVQSALAGLGLFAAGIPGAGMVCAITLILCLAQIGPLLPL 264

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I+L  +        + +W  +   + D  +RP L+   + LP L    G+VGG+  
Sbjct: 265 IGAAIWLFYQDATIAGVAMLVWAFVVSSL-DNVIRPPLIQRGVDLPMLLVLAGVVGGLIA 323

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMA 348
            G++GLFIGPV++A+   +    I  
Sbjct: 324 FGIVGLFIGPVILAVTYKLMHAWIDE 349


>gi|289679219|ref|ZP_06500109.1| hypothetical protein PsyrpsF_38341 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 330

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 3/312 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++ L  F+  V  A+I+G    P+      K   S    ++   +  + + I+P++ +
Sbjct: 21  AFIWILLPFYGAVFWAVILGIIFAPVQRKLQIKFNWSRNLTSLCTLMICLVIAILPVIVI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   L   V               D+      + L    +   + L+       
Sbjct: 81  SALLVQEGTTLYKNVETGQLDIAGYLAEFKDLLPHSMQALLDRLGMGDLEGLRDKIAKGA 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G  ++   A  FG    D+ +S+  M+  L+FF RDG  + +++ +    L     +
Sbjct: 141 MQ-GSQYLATQAFSFGQGTFDFVVSVFIMLYLLYFFLRDGQELVRKIRTAFP-LGEQQKR 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           ++     +V+R+T  G  ++A+ +G + G  +W+  +PS +   VI A ++++P     I
Sbjct: 199 RLQLKFTRVVRATVKGNVVVAVTQGALGGFIFWVLDIPSALLWAVIMAFLSLLPAVGAGI 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V++Y L+ G I+    L L+G   + +VD  LRP LVG   K+P        +GG+
Sbjct: 259 VWAPVAVYFLLSGMIWQGVVLGLFGVFVIGLVDNVLRPILVGKDTKMPDYLILISTLGGM 318

Query: 321 RTMGLLGLFIGP 332
              GL G  IGP
Sbjct: 319 SVFGLNGFVIGP 330


>gi|47566578|ref|ZP_00237400.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47556608|gb|EAL14940.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 361

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFIGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQI 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLVKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPVLAVIRTVI 349


>gi|331006457|ref|ZP_08329760.1| Putative permease PerM [gamma proteobacterium IMCC1989]
 gi|330419757|gb|EGG94120.1| Putative permease PerM [gamma proteobacterium IMCC1989]
          Length = 365

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 122/352 (34%), Gaps = 12/352 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               N + ++  +++ +  V ++ L     PVL+A+II F    +  S  +K        
Sbjct: 11  RYFHNEEAVLVVVLLALSFVVIWSLGDVLGPVLAAIIIAFLMQGMMVSLKNK-GLPHWSA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A   ++ + ++ L+F+      +   L  ++      G  +   L +          
Sbjct: 70  VAVAITFLISVMVLALVFIIPALWEQALSLSKELPRMVTQGRDLLLHLPESYP------- 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T          IL  +    +    +  F+     + L   L ++ + + +FFF +D  
Sbjct: 123 -TFITEGQVEQLILHASTRLASFGQVVVSFSVANLPVLLTGLLYMVLVPLLVFFFLKDSQ 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+   + SL          KI   + + I +   G  I  +  G+V   ++ + G+   V
Sbjct: 182 SMLTWVGSLLPKE-RPVMNKIFAEMNQQIANYVRGKVIEILVVGIVSYISFTILGLNYAV 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L +   +  +IP    +  T   + +     G  +    L +   +   +    L P L
Sbjct: 241 LLALAVGLSVVIPYVGAVLVTIPVLLIGFFQWGWGYELLYLTIVYFVIQGLDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               +KL  +     ++      G  G+F    L  L+  I         E 
Sbjct: 301 FSEAVKLHPVAIILAVLIFGGLWGFWGVFFAIPLATLVKAIINAWPSPQSER 352


>gi|54302864|ref|YP_132857.1| hipothetical membrane protein [Photobacterium profundum SS9]
 gi|46916288|emb|CAG23057.1| hipothetical membrane protein [Photobacterium profundum SS9]
          Length = 365

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 141/346 (40%), Gaps = 5/346 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  ++  S   +K F  PVL   II     P+     +  +      A +
Sbjct: 19  MVESAIRVGLLFILLAWSYGIVKPFLIPVLWGAIIAVALMPLTVKLENMLKGKRGLSATV 78

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + + IVP +      +  ++ + S +             +++IP          +
Sbjct: 79  IAFIGILILIVPFVMFSISMVESVEGITSTISSGTLKIPGPTERIANIPIIGQQIFDVWQ 138

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S              T+G+  +        +  L + +S++        F  +  SIS
Sbjct: 139 LFSTNLEKAFTKFLPQLTSGLAMMASVIGNSIVSILMFVISLLISAA----FMANATSIS 194

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +++L   +  A+ ++ + +    IRS  LG+  +A  +  ++G   +  G+P+   + 
Sbjct: 195 KSVNTLSVRIAGAHGEEWATLCTATIRSVLLGVVGVACIQAFLVGIGVFAIGLPTAGLIT 254

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++A+    A +    V  Y+    +   AT   +W  +   + D  L+P L+G  +
Sbjct: 255 ILVLVLAIAQLPALLVVAPVIAYVYSIHDSTTATIFAVWTLLA-GLSDNFLKPLLMGRGL 313

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +P      G +GG+ + G+LGLFIGPV++A+   ++ E +   ++
Sbjct: 314 DIPMPVILLGAIGGMVSSGILGLFIGPVILAIWYQLFNEWMHESEK 359


>gi|260772301|ref|ZP_05881217.1| permease PerM [Vibrio metschnikovii CIP 69.14]
 gi|260611440|gb|EEX36643.1| permease PerM [Vibrio metschnikovii CIP 69.14]
          Length = 357

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 110/353 (31%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+F   + +YF     AP+L A+++ +      +    +     T 
Sbjct: 10  QRRFSDPHAVSLVAILFFGFIIIYFFGHLIAPLLVAIVLAYLLEWPVTQLC-RLGIPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++     + L +V L  +      ++  L++ +             L +    +   +
Sbjct: 69  SVLVIVSLFLGLMLVALFGIVPTIWQQVINLINDIPNMYNDLQNFIASLPERYPELANLQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +++ ++  +     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IIESLVNNAKNKALSMGESVVKGSLASLVSLAT--------LAVYLILVPMLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +          K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QEMMSIASGVLP-RNRRLATKVWLEMNQQISNYIRGKVLEILIVGGVSYVTFAILDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V      +IP     + T       L   G       L +   I   +    L P 
Sbjct: 240 ALLAVAVGFSVLIPYIGAAAVTIPVAIVGLFQWGLTPQYYTLLIAYFIIQILDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  +     ++      G  G+F    L  L+  +W        E 
Sbjct: 300 LFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWHALPSNDDET 352


>gi|168210323|ref|ZP_02635948.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|168214514|ref|ZP_02640139.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|182626553|ref|ZP_02954301.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|170711626|gb|EDT23808.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170714004|gb|EDT26186.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|177908141|gb|EDT70707.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 366

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +L       + EL+  +     +   +   +            +  H     +  I    
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTNYVQNLFTEIMASFKVPEGINSYLPHGDT--NKLITFIG 151

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + T   +++   A       +++    +  I  L    +     S+    +        
Sbjct: 152 SMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKDLGNE 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   P
Sbjct: 212 ILEFIKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V  ++ +  +   A  + ++  I        L P L+G  + L       G+  G
Sbjct: 272 FIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTLG 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G +G+ +G  +M++I +   + I   +   E
Sbjct: 332 GAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|165920273|ref|ZP_02219545.1| putative membrane protein [Coxiella burnetii RSA 334]
 gi|165916829|gb|EDR35433.1| putative membrane protein [Coxiella burnetii RSA 334]
          Length = 363

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 118/355 (33%), Gaps = 12/355 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P+ +  +  +F + + + F   +  PV+ ++++ +            +       
Sbjct: 18  RHFSDPEALALFFTLFFVFLLIEFFGKYLLPVVISVVLAYLFASPVRWLERWRFPH-WAA 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I  +  + +F++ L  L      ++  +V +   A   G             ++ ++ 
Sbjct: 77  VTIVYLFFLGIFLLALFGLLPLMWKQLASMVHEFPKAITKGQEWMTEYMHRYPKLFPTDP 136

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                 +                  FI  F+       ++  L ++ + + +FFF +DG 
Sbjct: 137 IANLAGYLHQQSAR--------IGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGG 188

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           SIS  L            + +   + + I +   G  I  I   +V   A+ L G+    
Sbjct: 189 SISNWLSRFLPERQG-LIRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFALLGLQYAF 247

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+  +  ++P    I  T       L+  G   +   L +  AI + +    L P L
Sbjct: 248 LLGVLLGLSVIVPYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLL 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               + L  +     ++      G  G+F    L  L+  +      A     E 
Sbjct: 308 FSEAMDLHPIVIILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNET 362


>gi|161612754|ref|YP_001586719.1| hypothetical protein SPAB_00453 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362118|gb|ABX65886.1| hypothetical protein SPAB_00453 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 352

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 7   RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 66  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 126 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 178 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 236

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 237 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 297 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 345


>gi|163942140|ref|YP_001647024.1| hypothetical protein BcerKBAB4_4237 [Bacillus weihenstephanensis
           KBAB4]
 gi|163864337|gb|ABY45396.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
          Length = 355

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P   A  I +   P+      K+    T   ++  +         +    
Sbjct: 35  IIFVFKVAITPFFIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 94  PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFGGV 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 144 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 204 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G   
Sbjct: 264 AIPTLMIAATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEV 323

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 324 AGIVGLLISVPILAVIRTVV 343


>gi|329296193|ref|ZP_08253529.1| putative inner membrane protein [Plautia stali symbiont]
          Length = 370

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 137/359 (38%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           ++  M  PQ +     I+ +I+  L+ ++ F      A ++   +WP+            
Sbjct: 4   LQRGMDLPQMLFSLMFILLMIIACLWVVQPFILGFAWASMVVIATWPLMIRLQQLLWGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   +  T+ ++ LFI+P+  L    +     +++     +     +         G   
Sbjct: 64  SLAVIAMTILLLLLFIIPIALLVSSLIDNSAPVIAWATQRHLVLPDLAWLRDIPYAGRKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              + K +    +  +            F    A  FG   L   L ++F ++  +    
Sbjct: 124 YSSYHKLIDGGGAAIMSQVQPYIGRTTGFFVAQAGHFGRFMLHLALMLLFSVLLYW---- 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +      +          +  + IR+  LG+ + A+ +G++ G    ++G+P
Sbjct: 180 RGEQVGLGIRHFAYRMGGRRGDAAVLLAGQAIRAVALGVVVTALVQGVLGGIGLAISGIP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  +  ++  G  I      I+L   G+    T L +W  +   + D  LRP 
Sbjct: 240 YATLLTVLMILTCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLVWSCVVGTL-DNVLRPM 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     LP +    G++GG+   G++GLFIGPV++A+   +    +       +   +
Sbjct: 299 LIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWMHEAPAPDDDPET 357


>gi|111018222|ref|YP_701194.1| hypothetical protein RHA1_ro01211 [Rhodococcus jostii RHA1]
 gi|110817752|gb|ABG93036.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 389

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/349 (11%), Positives = 100/349 (28%), Gaps = 18/349 (5%)

Query: 6   LNPQGIMRWMIMF---IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           L P  +   + +    +       L+ F   +  A +   T  P+      +        
Sbjct: 26  LLPSILYVLLAVAAYQLSGWLFVNLRSFLGLLFLAWLFSITIEPVVDWLERR-GLRRGAA 84

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +   ++    I  L         ++ +L+  +  A          + D          
Sbjct: 85  TGLVLFALFVFAIGFLALFGTLLAQQLAQLLKALPGALSSVTDWSNRVFD---------- 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                       I        +  +             L     ++ +++ +F+    G 
Sbjct: 135 ---TDFATGEDLIHLTPETIRDLAERFTPGVLGVLSSLLGVVFQMLTLLLFVFYMSAQGP 191

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ + + S            +  I  +      +   I+A    +  G      GVP  +
Sbjct: 192 ALRRTISSWFPARQQGVISVVWEISVEKAGGYVVSRLILAAVSSVATGIFLVAIGVPYWL 251

Query: 243 ALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L + T I++  +P        A+   +       +   + ++G +   I +  L P + 
Sbjct: 252 PLALWTGIVSQFVPTLGTYLAIALPAIIAAASQPMDGVWVIVFGTVYQQIENYVLHPRIT 311

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              + +     F  ++ G    G +G  +   ++A I  + +      +
Sbjct: 312 SATVSIHPAVAFGSVIVGASLFGPVGALVSVPVVAAIQALVETYGRRYE 360


>gi|312127608|ref|YP_003992482.1| hypothetical protein Calhy_1396 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777627|gb|ADQ07113.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 351

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 112/352 (31%), Gaps = 10/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +   I    I+     ++        P L AL + +   P       K   S   
Sbjct: 8   KRYFTDILFIALIAIVIYFFANMKAFWPILIPFLIALFLSYLLKPWVDFLEKKVR-SRDI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I+   +  + I+  ++     + E K+L+  V                         
Sbjct: 67  SILISFAIIFGITIMVFVYFIPLFVSETKQLIQNVPEHIALIQKWF---------FEIDS 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L+      + + +                         L  + + I  F+  RD 
Sbjct: 118 KLLNKLNIDIKEILNANSINIEGISKQTLSIFLNIVKSISSNILYYLLIPIISFYILRDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L    +      I   + +V+     G  + A   GL+    + L  V   
Sbjct: 178 KRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAFIVGLLSFVGFSLLSVRYA 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +    + P ++
Sbjct: 238 ALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDSFIISPRVI 297

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 298 GSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|57339636|gb|AAW49805.1| hypothetical protein FTT0479 [synthetic construct]
          Length = 403

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 112/355 (31%), Gaps = 6/355 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +     L  I 
Sbjct: 42  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRIVLVYIV 101

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +  +  L    + ++ + V +              LS     +   +     
Sbjct: 102 YILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRINSI 161

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S   S+       + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 162 VSWFDSI---DWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 218

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +  +   +   +     G  I  I    +    +    +   V L V
Sbjct: 219 WFKSFLPEENGALY-YVWNDLKPKLADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 277

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP    +  T   I +  L  G       + +   +   +    L P L    
Sbjct: 278 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 337

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +  +     ++      GL G+F    L  L           +   K +   N
Sbjct: 338 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADIN 392


>gi|311694920|gb|ADP97793.1| permease perM [marine bacterium HP15]
          Length = 359

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 113/358 (31%), Gaps = 12/358 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + + ++ ++I+    + + +     AP +++LI+ F    + +   +K     T  
Sbjct: 11  KYFSDEEAVILFLILVTGTIFVIWFGAMLAPAIASLIVAFILQGLVTKL-NKLGVPETVS 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   +  + + +  L  L      ++  L  +     +        L      + + E 
Sbjct: 70  IIGVFLVFLGVLVGFLFGLLPLIWTQLSNLAGEAPRIIRELQSYLELLPQQYPHLISGEA 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +   S   +           +   ++  F+       +   + ++ + I +FFF +D  
Sbjct: 130 VSTVYSQVSTE--------VGHMTQWLVSFSLSSIPDLVALLIYMVLVPILVFFFLKDRE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +  L          +I   V     +   G  +  +  G     A+ L G+P   
Sbjct: 182 VLLNSIARLLPPQ-RPMMLQIWHEVNLQCANYVRGKAVEILIVGGATYIAFKLLGMPYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  +IP       T       L   G       + +   +   +    L P L
Sbjct: 241 LLSLLVGLSVVIPYIGAAVVTIPVAVIALFAFGWGSQFIWVMVIYGVIQALDGNVLVPIL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 L  +     ++      GL G+F    L  ++  ++    +       +  S
Sbjct: 301 FSEVNNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAVFAAWPVKESAPPAEPGS 358


>gi|225024450|ref|ZP_03713642.1| hypothetical protein EIKCOROL_01325 [Eikenella corrodens ATCC
           23834]
 gi|224942831|gb|EEG24040.1| hypothetical protein EIKCOROL_01325 [Eikenella corrodens ATCC
           23834]
          Length = 357

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 119/328 (36%), Gaps = 8/328 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++   +P + A ++ +   P+       +       A++  V  + L ++ LL +    +
Sbjct: 29  MRDVLSPFVVAAVLAYILNPLVEKLCRHRV-RRATAAMLVMVFALLLLVLLLLIVVPMLV 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +   L+ K+                +P                 S  +         G+
Sbjct: 88  QQFGSLLDKLPELVAFAQN-----KALPWINHMLGTHWVLNDQSVSKWLSGHVGSVQAGL 142

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                     G   +    +++ +   L++F  D    ++ ++++    + A + +I   
Sbjct: 143 SKALPALLEQGGSLVTSLGNLMVLPFLLYYFLLDWSRWAEGINTMIPRRYLAAYTRIGGN 202

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +  V+     G  I+ +  GL+ G    LAG+ S  A+G++  ++  +P     +   ++
Sbjct: 203 MDTVLGEFLRGQLIVMLIMGLLYGLGLMLAGLESGFAIGMVAGLLVFVPYLGAFTGLLLA 262

Query: 267 IYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                   G       ++   A+  F+    + P +VG  I L      F L+     +G
Sbjct: 263 TMAALLQFGTWQGLITVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFALMAFGSLLG 322

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +G+ +   L A+  V+ +E + A  ++
Sbjct: 323 FVGMLLALPLAAVTLVLLREGVAAYMDS 350


>gi|92116459|ref|YP_576188.1| hypothetical protein Nham_0862 [Nitrobacter hamburgensis X14]
 gi|91799353|gb|ABE61728.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14]
          Length = 360

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/349 (18%), Positives = 134/349 (38%), Gaps = 5/349 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   ++  +I  +   ++ F   +  ++++    +P++              A + T+ 
Sbjct: 17  AIRLGLLALLIYWTFVLIRPFVPILAWSIVLTVALYPVFDLLSRLLGGRPRLAAALLTLI 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I P  +L    +  +KEL  ++   N      P  + D P        +    S 
Sbjct: 77  NLGIVIGPATWLGLSALDGVKELAGQLNAGNLVVPSPPEGVKDWPLIGPNLYEFWNQASS 136

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +             +   A   G+  L + LS+        +    G  + +   
Sbjct: 137 NIRAALREVAPYLKPLAGVLLALAGNAGVGTLKFLLSVALAGFLFPY----GSQLIEAGK 192

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S    + P   +    +    IR+   G+  +AI + L+ G  + LAG+ S   L     
Sbjct: 193 SFLYRIVPEQSEHFLELAGATIRAVSQGVIGVAIIQSLLAGIGFKLAGISSAGLLAFAVM 252

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I++++  GA I    V I++ +  +   A  L       + ++D  L+P ++   +  P 
Sbjct: 253 ILSIVQVGAAIVLVPVIIWIWMDKDFTTAL-LLTVFLGLVGVLDNVLKPLVMKRGLTTPT 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L  F G++GG    G++GLFIGP++++L   +    I + +     + S
Sbjct: 312 LVIFVGVIGGTLAHGIVGLFIGPIILSLAWELTVAWIRSDRAGTASLPS 360


>gi|198282862|ref|YP_002219183.1| hypothetical protein Lferr_0725 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218665195|ref|YP_002425063.1| hypothetical protein AFE_0571 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247383|gb|ACH82976.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218517408|gb|ACK77994.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 347

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 121/347 (34%), Gaps = 10/347 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q      I+ ++    Y L    +P L A I+ +   P+ +     +  + T+   +  V
Sbjct: 2   QRFFVLAILILLGWLAYRLSPILSPFLIAGILAYLGNPLVTRLQRYR-INRTWGTTLVFV 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +     + L      +    V  +             L        ++ +     S
Sbjct: 61  LVILVLAGITMALLPVIRHQSLLFVEYLRQY-------LELLQTRIIPQLSARIGIPLDS 113

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +        +    + A   G   +   LSII + +  F+  RD   +  ++
Sbjct: 114 QSLTHYATANAQKLAGWLGRSLQMALSSGPSLISSVLSIILVPVLGFYLLRDWPRLIARI 173

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L    +    ++++     ++ +   G  ++ +  G        + G+ + + +G++ 
Sbjct: 174 AALIPPHYLPLSRRLAGDADAMLMAFLRGQLLVMLALGASYAIGLSIVGLKTAILVGLVA 233

Query: 249 AIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            +++ +P    +S  A++   +    G       + +   I   +      P+LVG  I 
Sbjct: 234 GLLSFVPYLGVVSGIAMATLAMYVQTGAFLPILGVLIVFGIGQILESMVFTPYLVGDRIG 293

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L  +   F ++ G    G  GL +   + A++  + +       +++
Sbjct: 294 LHPVAVIFAVLAGGELFGFSGLLLALPVTAVLIALLRHLHGWYVQSR 340


>gi|229829964|ref|ZP_04456033.1| hypothetical protein GCWU000342_02070 [Shuttleworthia satelles DSM
           14600]
 gi|229791262|gb|EEP27376.1| hypothetical protein GCWU000342_02070 [Shuttleworthia satelles DSM
           14600]
          Length = 397

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 4/337 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIVPLL 79
            + ++ G   P++  +++     P+                      +V++  L  + + 
Sbjct: 43  FIGWITGILKPLVFGIMVALLLSPVVHRLERGFSHVPILRKHRTRGLSVAITVLAALLVF 102

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           FL    +L       + V      I    +   I G               +S    +  
Sbjct: 103 FLVASLLLSSLTNSLQAVSVENLKIIANNFQESISGIWSLVTEVMDRFHIDRSFLQEAVN 162

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                  +     A            S+IF I  +          ++   S+      +Y
Sbjct: 163 NASNWARNSATSAAKGVTGFMTTAFFSLIFSIYFMADHEGFIAYWTKAAKSILPEREYSY 222

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           + +              G  + A+  G+ +     L  VP  + +G++  I  +IP   P
Sbjct: 223 FMEFLGNAGHAFIGYVRGQLLDAVFVGVTMSIILSLIEVPYALLIGMMMGIGNLIPYVGP 282

Query: 260 ISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 V+   +   +        +   +   I    + P ++   + +  +     L+ 
Sbjct: 283 AVGYVSVTFVCVFAQDHSKLLIALIAVFVVTTIDGNVINPRILSNAVSVHPVLVIAALLV 342

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G    G+ G+F+   + +LI + + + +    E  ++
Sbjct: 343 GSAVGGVTGMFLAVPVASLIRIYFDKLVDWRCEETDE 379


>gi|295836752|ref|ZP_06823685.1| permease [Streptomyces sp. SPB74]
 gi|197697625|gb|EDY44558.1| permease [Streptomyces sp. SPB74]
          Length = 444

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 97/309 (31%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      + AL+I     P+ +               + T+
Sbjct: 80  RLLVLAATVWVLMKVISAVRLIVLAFVVALLITALLQPLVARLTRH-GVPRGLATALTTL 138

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  + +L S+V    +                W  +       
Sbjct: 139 FGFLVMGLMGWFVVWQIMENVDQLSSQVQDGIEDLRR------------WLLDSPFHVTE 186

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         + +         + ++    ++    +  F   DG  I    
Sbjct: 187 KQINDIAKNLREAIGTNTNQLTSAGIEGVTVIVEMFTGLLLAFFSTIFLLYDGKKIWGWF 246

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                   + S   G  I+A+ + + +G   ++  VP  V L VI 
Sbjct: 247 LKLVPAAAREGVAGAGPRAWDTLTSYVRGTVIVALIDAVFIGIGIYVLDVPMAVPLAVII 306

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   ++ A  +     +   I    L+PF++G  +++
Sbjct: 307 FLAAFVPLVGAVVSGALAVLVALVTQGVWTAIIVLGVVLLVQQIEGHVLQPFILGRAVRV 366

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 367 HPLAVVLSV 375


>gi|291441522|ref|ZP_06580912.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
 gi|291344417|gb|EFE71373.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 371

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 116/349 (33%), Gaps = 14/349 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++  ++L  + ++     P++ AL++   +WP+      ++  +    A + TV
Sbjct: 23  ELLLVLVMAAVVLWVVGWMWPVVWPLVVALLLTTLTWPLARFL-RRRGVAPALAASVVTV 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  +      +  EL   VV   +                WA+        
Sbjct: 82  LFLLVAAGTVALIAVPVASQSGELADGVVEGIRRLRE------------WAAGPPLNIDD 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    + T    +    I   A           ++ +  +  +FFF +DG      L
Sbjct: 130 DQIAHAFDAATARIQDSAGSIANTAVTGVSTVFSGVVTAVLALFLMFFFLKDGPRFLPWL 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++      + +      ++ + + + +G   WL  VP  + L V+T
Sbjct: 190 GRQLPGRLATDIPTVAARCWDSLGAFVRSQALVGLLDAVGVGLGLWLLDVPLVLPLAVLT 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + NA  +     +   +     +P +    + L
Sbjct: 250 FVAAFVPIVGALFAGFVAVLIALVSNGLTNALLVLAVIIVVQQLEGNVFQPIIQSRGLGL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                   +  G    G+ G F+   +  LIAVIW      + +  +  
Sbjct: 310 HAAVVLLAVTLGGSLAGIAGSFLAVPVAGLIAVIWNYVREQLSDPPQDP 358


>gi|167761301|ref|ZP_02433428.1| hypothetical protein CLOSCI_03706 [Clostridium scindens ATCC 35704]
 gi|167660967|gb|EDS05097.1| hypothetical protein CLOSCI_03706 [Clostridium scindens ATCC 35704]
          Length = 380

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 105/335 (31%), Gaps = 2/335 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +   + +   + L GFF P +    I + + PI +    + +      + +  ++V+
Sbjct: 24  FSLIATILFIYVGFRLLGFFMPFVIGWFISYIASPIVNWLEKRVKIVKKLGSALIIIAVL 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSH 129
               + + F+      E+  L+  +    Q        +     G++             
Sbjct: 84  GAVGILIYFIGSKLWKEIASLIQNMPKMYQDLESGFGEIGSSLNGVFKVLPASLQDAWHT 143

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S    +         +     A           ++ I   I+ +FF  +   + +   
Sbjct: 144 MTSNLDKTMGDWMGRISEPTVAAAGNVAKRIPSVLIATIVTFISAYFFIAERDEVIEWAK 203

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +           +   +   +   F     I     L+L   + +  V  +  L ++ A
Sbjct: 204 KVSPEPIVRRMSMVIDNLKFAVGGYFKAQFKIMGVVCLILVIGFVILKVHFYFLLALLIA 263

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +  +P     +         +    +  +   +       +V + ++P LVG  + +  
Sbjct: 264 FLDFLPFFGTGTALIPWALYKLLVKDYRMSVGLIILYGVTQLVRQLIQPKLVGDSMGMQP 323

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           LPT   L  G +  G+ G+     +  ++  ++K 
Sbjct: 324 LPTLLFLYIGYKAGGIFGMIFAVPIGMIVINLYKA 358


>gi|110802261|ref|YP_697882.1| hypothetical protein CPR_0554 [Clostridium perfringens SM101]
 gi|110682762|gb|ABG86132.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 366

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 113/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +L       + EL+  +     +   +   +            +  H     +  I    
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTNYVQNLFTEIMASFKVPEGINSYLPHGDT--NKLITFIG 151

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + T   +++   A       +++    +  I  L    +     S+    +        
Sbjct: 152 SMVTLLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKNLGDE 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  +I+ + I +      I ++  GL+      +      + L V+  I  MIP   P
Sbjct: 212 ILEFIKILNEKIGTYVGIKAIDSLIIGLLAFVGLTVIKSEYALLLSVLVGITNMIPYFGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V  ++ +  +   A  + ++  I        L P L+G  + L       G+  G
Sbjct: 272 FIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTLG 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G +G+ +G  +M++I +   + I   +   E
Sbjct: 332 GAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|238787117|ref|ZP_04630917.1| hypothetical protein yfred0001_6030 [Yersinia frederiksenii ATCC
           33641]
 gi|238724905|gb|EEQ16545.1| hypothetical protein yfred0001_6030 [Yersinia frederiksenii ATCC
           33641]
          Length = 367

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/359 (19%), Positives = 141/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+             
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIVASFWVVQPFVMGFAWAGMVVIATWPLLVRLQKLLWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
              ++ T+ ++ LF++P+  L    +     L+      +   +P   WL  IP  G   
Sbjct: 66  LAVMVMTLLLILLFVIPIALLVSSLVENSGPLIQWASSPSNLRMPDVTWLQTIPMVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   ++ I          + ++   A+  G     + + +  M++     Y 
Sbjct: 126 YSGWHTLIAGGGNVLIAKIQPYIGASVTWLVAQAAHVGY----FLIHLALMLLFSILLYF 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    LAGV 
Sbjct: 182 HGEQVGLAIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQSVLGGIGLALAGVQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  +  +   G  +      I+L   G+    T L +W  I    +D  LRP+
Sbjct: 242 YATLFTVLMFVCCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCIV-GTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESITE 359


>gi|307824016|ref|ZP_07654243.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307734800|gb|EFO05650.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 366

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 100/349 (28%), Gaps = 13/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +  + NPQ +   +I+    V +Y L     PV  ++++ +    + S   S        
Sbjct: 18  KRFLPNPQAVALAIILIASFVLIYSLSDLLMPVFVSIVLAYLLEGLVSKAES-MNMHRLP 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M      L +L      +  ELV ++             L ++   + +  
Sbjct: 77  AVYLVFSVFMACLGFLLFYLIPMVSQQAVELVQQIPEILNRAQTGILRLPEMYPKLVSES 136

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   Q   +     + +     +               + +  + + +FFF +D 
Sbjct: 137 KIQQIMFAVQRELLTYGQNVLSLSAASVVGLV--------SVMIYLFLVPMMVFFFLKDK 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                 ++   V   I +   G          V    Y   G+   
Sbjct: 189 QMLIAWFLQFMP-RDRNLTVRVWEEVDTQIGNYVRGKFGEVFILWAVSYVTYATMGLNYA 247

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRP 298
           + L V+  +  +IP       T   + +              + +  +I   +    L P
Sbjct: 248 MLLAVLMGLQVIIPYVGATLVTFPVLGVAYFQWGLGGDEFMYVVIAYSIIQALDGVVLVP 307

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L    + L  +     ++      G  G+F+   L  ++  +      
Sbjct: 308 VLFSEAVNLHAVAIIVAILLFGGLWGFWGVFLAIPLATVVKAVLTAWPR 356


>gi|210617092|ref|ZP_03291402.1| hypothetical protein CLONEX_03624 [Clostridium nexile DSM 1787]
 gi|210149481|gb|EEA80490.1| hypothetical protein CLONEX_03624 [Clostridium nexile DSM 1787]
          Length = 382

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 109/353 (30%), Gaps = 20/353 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------------STFLAVI 65
           ++L  L F+     P +    I F           K   +                  +I
Sbjct: 30  VVLDGLGFIGRVIFPFVLGGAIAFVLNVPMHFIEEKFFGNKKMKENKWAKKFARPASFLI 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + V+ +  + +  +          L   +         V +W  +I         W  
Sbjct: 90  TILFVLGIIGIVVFVVAPALGDTAMNLGRNIQAFI---PQVQKWAENIFQDNKEIVKWIG 146

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +       I S      NG   +           +    +     +   +       ++
Sbjct: 147 SMEFKWDEMIKSGIDFFKNGAGSVLGSTFEAAKSIVSGVTTFFIAFVFSCYILLQKEKLN 206

Query: 186 QQLDSLGEHLFPAYWKKISRIV----PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            Q+  +     P  W +I   +     K   +   G  + AI  G +   A  + G+P  
Sbjct: 207 VQVRKVMYAFMPKDWTEILLALSSLTYKTFSNFLTGQCVEAIILGSMFFVAMTIFGMPYA 266

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +G++ +  A+IP         +   L+   N   A    +   +   I    + P +V
Sbjct: 267 LLIGILISFTALIPIFGAFIGCVIGALLIFMVNPMQALIFVVMFLVLQQIEGNLIYPHVV 326

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G  + LP +     +  G   MG++G+ I   + +++  +++  +    + KE
Sbjct: 327 GNSVGLPSIWVLVAVSIGASLMGIVGMLIFIPIASVVYTLFRGIVHRRLKEKE 379


>gi|239827828|ref|YP_002950452.1| hypothetical protein GWCH70_2491 [Geobacillus sp. WCH70]
 gi|239808121|gb|ACS25186.1| protein of unknown function UPF0118 [Geobacillus sp. WCH70]
          Length = 353

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 99/327 (30%), Gaps = 11/327 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                  P   A  I +   P+      K         +             L       
Sbjct: 38  LFATALIPFFIAAFITYLLHPLVEYIHEK-GIPRWAAILFIYFLFFGGIGYGLYKGIPLF 96

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++K+L   +    +      + + +           T         +I +        
Sbjct: 97  IQQLKDLSESLPALIETYRNWTKQIHN----------QTSAWPMEIHTRIEAMLIQLEQT 146

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                          ++  +  + +   +F+  +D   + + +  +    +        +
Sbjct: 147 AANALTMVINGVKGIVNSAMLFLLIPFIVFYMLKDIDQLKKAVWYITPKRWREPGIAFLK 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V + + +   G   + +  G V     W+AG+   + LG I     +IP   P+  +  
Sbjct: 207 DVEESLGNYIRGQLFVGLLIGSVAAFLLWIAGMDYPLLLGFIIGATNIIPYFGPVIGSIP 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ L    ++     + +   +  F+    L P +VG  + +  L   F L  G    G+
Sbjct: 267 AVILAATVSLKMVLIVAVIIFLLQFLEGNILSPLIVGKSLHMHPLAIMFALFFGGEIAGV 326

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           LGL +   L+A++ V         + +
Sbjct: 327 LGLIVAVPLLAVLKVALLHWKEHYQPH 353


>gi|309779659|ref|ZP_07674418.1| acetyltransferase, GNAT family [Ralstonia sp. 5_7_47FAA]
 gi|308921600|gb|EFP67238.1| acetyltransferase, GNAT family [Ralstonia sp. 5_7_47FAA]
          Length = 352

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 123/351 (35%), Gaps = 8/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ++  Q  +  ++   I V ++ L+    P L   +I +   P       +        A+
Sbjct: 4   LIRRQAWLWGLVALAIGVLMWALRPVLTPFLLGALIAYMLQPGVEWLARR-GLPRWIAAL 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +    +  + +  +F     E  +L +K+           R     P          
Sbjct: 63  VMILCFAAMAALLVTLMFAVVQTEGPQLQAKIPALLATLNAWLR-----PKLAVFGLGVD 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L H + L        + N    I ++    G   L    +++ + + LF+   D   +
Sbjct: 118 LDLPHLRDLLAGPRYGGEGNSAIAIWQYLRTSGNAMLTVVGNVVLVPLVLFYLLYDRHQM 177

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            ++++SL    + A  +     + +++     G  ++ +        A  LAG    + L
Sbjct: 178 FRRMESLVPRRWLAKTQAFVIDIDRMLSQYLRGQLLVMVVLAAFYPIALTLAGFEIALPL 237

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G+ T +   IP     +  A+++       G+++    + +   +   + +  L P L+G
Sbjct: 238 GLFTGLAVFIPYVGFAAGLALAVLAAVLQFGDLYGIGAVAVVYGLGQILENVFLTPRLIG 297

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             I L  L   F L+      G  G+ +     A++A   +E       ++
Sbjct: 298 ERIGLHPLAVIFALLAFGHLFGFFGVLLALPASAVLAAALRELRHRYLASE 348


>gi|317122062|ref|YP_004102065.1| hypothetical protein Tmar_1225 [Thermaerobacter marianensis DSM
           12885]
 gi|315592042|gb|ADU51338.1| protein of unknown function UPF0118 [Thermaerobacter marianensis
           DSM 12885]
          Length = 488

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 100/310 (32%), Gaps = 9/310 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P + AL++ +   P      +          ++  + V     V +++L    + E+  L
Sbjct: 32  PFVLALVLTYLLAPAVDFLEAY-GLRRATAILLLYLLVTLAAAVAVVYLLPGFLDELNRL 90

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            +++    +    +   +              + +           T L  +    +   
Sbjct: 91  GTQLPGYTRRLRTLVEGVRQDAARATLPATVRQAVLQQIDRTEAWVTALLADLTGGLVEG 150

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                 + L   ++         +   D   + +             W ++ R V +V+ 
Sbjct: 151 LLGAAPLLLAPVMAF--------YLLNDLPRLRRWARERLGRGRRRRWLELVRAVDQVVG 202

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
               G  ++A   G ++ +     G+   V LG + A+  +IP   PI      + +   
Sbjct: 203 GFIRGQLLVAGFVGFMVTAVATFFGLRFAVLLGALAALADLIPYFGPIIGAVPVVAMAAL 262

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +   A  + L   +  ++ +  L P ++G  + +  L     L+      GL GL    
Sbjct: 263 QSPATAVKVALALLLIQWVENSVLSPRILGQRVGVHPLVVIGALLVAGHHFGLAGLLFAV 322

Query: 333 VLMALIAVIW 342
            +  L+ V+ 
Sbjct: 323 PVAGLVHVLL 332


>gi|288934120|ref|YP_003438179.1| hypothetical protein Kvar_1239 [Klebsiella variicola At-22]
 gi|290508325|ref|ZP_06547696.1| permease [Klebsiella sp. 1_1_55]
 gi|288888849|gb|ADC57167.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
 gi|289777719|gb|EFD85716.1| permease [Klebsiella sp. 1_1_55]
          Length = 354

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 108/350 (30%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +           +   S T+
Sbjct: 10  RRRFSDPEAIALLVILLAGFGIMFFFSGLLAPLLVAIVLAYLLEWPTVRLE-RIGLSRTW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSLVLILFVGILLLLAFVVLPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRNRMLTVGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I   +     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVSVATWIGFILFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G       LF    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSLFAVYLIIQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     +V      G  G+F    L  LI  +       +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDGL 349


>gi|124268111|ref|YP_001022115.1| transport protein [Methylibium petroleiphilum PM1]
 gi|124260886|gb|ABM95880.1| transport protein [Methylibium petroleiphilum PM1]
          Length = 405

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 114/353 (32%), Gaps = 17/353 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++  +      +  + +   LV+L +    F P+L  L+  +   PI    +  +   S 
Sbjct: 42  LQMPIGVRSLSLAVLAVLACLVALRWASAVFIPLLLGLMFSYALSPIVDRMVRWRIPRSL 101

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR--------WLSD 112
             AV+    +            Y    +  EL+  +  A Q      R         +  
Sbjct: 102 AAAVLLLAILAGA-----GSTAYSLGDDASELIESLPAAAQKLRQAVRAARNEPTSKMET 156

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +   +   E   +  +   + +   +          I  +     +           +  
Sbjct: 157 MQKAVTQLEQAAEEAASSAAGQRGVQRVQIEPRKFSIRDYLWSSTLGLAWLIGQATVVCF 216

Query: 173 ALFFFYRDGFSISQQLDSLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
             +F    G S  +++  +    F       +    + + I+   L   +I+   G+   
Sbjct: 217 ITYFLIASGNSFRRKMVKIAGPTFAQRRVTVEALDEITEQIQRYLLVQLLISALVGVATW 276

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIE 288
            A+   G+      G++ A++ ++P    I+ T     +  L  G +  A  +     + 
Sbjct: 277 LAFLWIGLEHAAVWGIVAAVLNLVPYIGSIAVTVGSALVAFLQFGTLDMALVVGGVSLVL 336

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             I    + P+L     ++  +  F G++      G+ GL +G  ++  +  +
Sbjct: 337 HCISGYLITPWLTSRTSRMSPVVVFVGVLAWGWLWGIWGLLLGVPILMAVKAV 389


>gi|330816979|ref|YP_004360684.1| hypothetical protein bgla_1g20910 [Burkholderia gladioli BSR3]
 gi|327369372|gb|AEA60728.1| hypothetical protein bgla_1g20910 [Burkholderia gladioli BSR3]
          Length = 347

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 141/323 (43%), Gaps = 3/323 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  L+ F   +  ALII + SWP++    S      +  A++ T  V  + +VP+L L 
Sbjct: 22  GILVLRPFLVSMTWALIIAYVSWPVHQRMQSLTNHRRSISALLTTSLVTVVLVVPILLLA 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E  E   ++             L  +   +    +W +  +            L 
Sbjct: 82  LPLSRESVEFAHRMAAWFSDR---HHTLPRLASSVPWLGVWLQAAADDIGRDARESRALL 138

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +     A++         L   F ++ LFF YRDG ++  QL  + E L    +  
Sbjct: 139 AQWGNHAMGAAAQLAANAGRNALKFGFAVLTLFFVYRDGRTVLDQLRLVFEPLLGKRFDV 198

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               + +V  +   G  + A  +G   G  YW AGV + + L V+TA+ A+ P G P  +
Sbjct: 199 YLASIGEVCCAVAYGGVLTATAQGTAAGIGYWAAGVEAPLLLSVLTALAALFPFGTPFVW 258

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V + LL+ G ++    L  WG + +  +D  +RP L+ G  ++PFL   F ++GG+  
Sbjct: 259 VPVGLALLLDGRLWAGVSLLAWGTLAISGIDNLVRPLLISGGTRMPFLLAVFSILGGIAA 318

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G +G F+GP+++A +  +W+E 
Sbjct: 319 FGFVGFFLGPIVVATLLAVWREW 341


>gi|16761411|ref|NP_457028.1| hypothetical protein STY2734 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765813|ref|NP_461428.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|29140892|ref|NP_804234.1| hypothetical protein t0364 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62181060|ref|YP_217477.1| PerM family permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|167549489|ref|ZP_02343248.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|197249699|ref|YP_002147446.1| permease PerM [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205353598|ref|YP_002227399.1| hypothetical protein SG2525 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857906|ref|YP_002244557.1| hypothetical protein SEN2474 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213160892|ref|ZP_03346602.1| hypothetical protein Salmoneentericaenterica_12908 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|224582973|ref|YP_002636771.1| hypothetical protein SPC_1164 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238913632|ref|ZP_04657469.1| hypothetical protein SentesTe_21218 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289829337|ref|ZP_06546949.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-3139]
 gi|25307066|pir||AC0818 probable membrane protein STY2734 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16421035|gb|AAL21387.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503711|emb|CAD02695.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136517|gb|AAO68083.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62128693|gb|AAX66396.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|197213402|gb|ACH50799.1| permease PerM [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205273379|emb|CAR38351.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205325154|gb|EDZ12993.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|206709709|emb|CAR34059.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467500|gb|ACN45330.1| hypothetical protein SPC_1164 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|267994604|gb|ACY89489.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301159045|emb|CBW18558.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913481|dbj|BAJ37455.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|320086987|emb|CBY96757.1| putative permease perM [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321222805|gb|EFX47876.1| Putative permease PerM [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322613768|gb|EFY10707.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322619489|gb|EFY16365.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624994|gb|EFY21823.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322629563|gb|EFY26339.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634007|gb|EFY30744.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635555|gb|EFY32266.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322639897|gb|EFY36573.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322644391|gb|EFY40932.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649155|gb|EFY45595.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655245|gb|EFY51554.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658292|gb|EFY54558.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664292|gb|EFY60489.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669460|gb|EFY65609.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673187|gb|EFY69293.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322676578|gb|EFY72646.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683329|gb|EFY79343.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322685785|gb|EFY81778.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|322715543|gb|EFZ07114.1| Putative permease perM [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
 gi|323130823|gb|ADX18253.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323192538|gb|EFZ77767.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323199583|gb|EFZ84674.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323208089|gb|EFZ93034.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323210188|gb|EFZ95089.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323217054|gb|EGA01776.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220607|gb|EGA05056.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225473|gb|EGA09704.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323229257|gb|EGA13381.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235428|gb|EGA19512.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323237386|gb|EGA21449.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323245141|gb|EGA29142.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323253131|gb|EGA36963.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258707|gb|EGA42368.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323260612|gb|EGA44222.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323266388|gb|EGA49876.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323269781|gb|EGA53231.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
 gi|326624317|gb|EGE30662.1| permease PerM [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
 gi|326628695|gb|EGE35038.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 355

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 348


>gi|325970365|ref|YP_004246556.1| hypothetical protein SpiBuddy_0529 [Spirochaeta sp. Buddy]
 gi|324025603|gb|ADY12362.1| protein of unknown function UPF0118 [Spirochaeta sp. Buddy]
          Length = 362

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/354 (14%), Positives = 111/354 (31%), Gaps = 21/354 (5%)

Query: 9   QGIMRWMIMFIILVSLY-----------FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           Q I++ +++  +L  +            F+   F P+L  LII +           +  +
Sbjct: 7   QKILQLLVIGAVLALVVVYFSTVMNTCSFVFSLFKPLLLGLIIAYLVDIPAKKLEVRFRK 66

Query: 58  S-------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
                    +   +I+    + +    L+ L       +++  S + +  +         
Sbjct: 67  RIKSPMVARSLATLISLCLFLLIIAGVLVLLIPQLGFAIRQFSSNLPVLYEESADSLEQF 126

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                 +         +    +  I           D+                +++IF 
Sbjct: 127 VSRRPEL---AQGFAMVETYVNTAIEEFKASSPKLADYTFSLLGGAISGIATSVVALIFS 183

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +  LF  +R    +                    ++  K     F G  + AI  G +  
Sbjct: 184 LYLLFGKHRLVRQLGYLAKRFMPEQHYQKLFSTMQVANKTFSKFFTGQFLEAIILGSLCT 243

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               L   P  + +G +  + A+IP        A+   L+   ++  A    L+  I   
Sbjct: 244 LGMLLFRFPYALTVGSVVGMTALIPLVGAYLGGAIGFVLIFGQSLRLALFFLLFLVILQQ 303

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +    + P +VG  + LP +  F  ++ G    G+ G+  G  L A +  + K+
Sbjct: 304 LEGNLIYPRVVGSSVGLPGVWVFASVILGAGLFGIPGVLFGVPLAATLYHLLKQ 357


>gi|154490306|ref|ZP_02030567.1| hypothetical protein PARMER_00539 [Parabacteroides merdae ATCC
           43184]
 gi|154088917|gb|EDN87961.1| hypothetical protein PARMER_00539 [Parabacteroides merdae ATCC
           43184]
          Length = 382

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 113/353 (32%), Gaps = 15/353 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  I+  +  L+    P L A ++ +   P    F  K +  S  L+++A +
Sbjct: 16  RILFGLAVISGIIYLIAVLRNALLPFLIAWLLAYMMQPFVKFFQYKVKLKSRLLSILAVL 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L I  +  +    + +      +     +           IP    +   + +   
Sbjct: 76  VSTLLVISLVGVVIVPSVTQ------EFNRTLELMQEHNSGYGHIPMIPQSWAEYLEKNI 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY---RDGFSIS 185
            P  L  L         +  I                SI  + +   +F     D   I 
Sbjct: 130 DPDQLAQLLSKENIEKAVKQIAPKMWIVLTNTFSILFSITIVFVIFLYFIFILLDYERIV 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L    +  + + ++  V   +   F G ++IA+  G++    + + G P  V LG
Sbjct: 190 NGWIRLIPERYRPFVQGLADDVEYSMNRYFRGQSLIALCVGILFAIGFKIVGFPLAVILG 249

Query: 246 VITAIMAMIPGGAPISFTAVSIY----LLIKGNIFNATC--LFLWGAIELFIVDKTLRPF 299
           +    + +IP    I    + +         G  F        L   I   I D  L P 
Sbjct: 250 LFIGFLNLIPYMQTIGIIPMILLSLLKAAETGENFWLIFGSGILVLCIVQCIQDLYLTPR 309

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++G  + L        L      +G +GL I   L  L    +K  I+  ++ 
Sbjct: 310 IMGKAMGLNPAIILLSLSIWGTLLGFIGLIIALPLTTLFLSYYKRFILMEEDQ 362


>gi|18309570|ref|NP_561504.1| permease [Clostridium perfringens str. 13]
 gi|168207396|ref|ZP_02633401.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|18144247|dbj|BAB80294.1| probable permease [Clostridium perfringens str. 13]
 gi|170661234|gb|EDT13917.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
          Length = 366

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +L       + EL+  +     +   +   +            +  H     +  I    
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTNYVQNLFTEIMASFKVPEGINSYLPHGDT--NKLITFIG 151

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + T   +++   A       +++    +  I  L    +     S+    +        
Sbjct: 152 SMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKNLGNE 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   P
Sbjct: 212 ILEFVKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V  ++ +  +   A  + ++  I        L P L+G  + L       G+  G
Sbjct: 272 FIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTLG 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G +G+ +G  +M++I +   + I   +   E
Sbjct: 332 GAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|34497807|ref|NP_902022.1| hypothetical protein CV_2352 [Chromobacterium violaceum ATCC 12472]
 gi|34103663|gb|AAQ60024.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 364

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 137/345 (39%), Gaps = 5/345 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                ++  +++  L  L+ F   +  A II  ++WP+YS    +        A++  ++
Sbjct: 16  AFRVAILALLVVACLKVLQPFLGALTWAAIIAISAWPLYSRLKLRLRGRHKLAALLIVLA 75

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLS 128
           +     +P+  +       +  L +             P WL+++P    + +   +   
Sbjct: 76  LSAALAIPIGLMALTLADTLPHLANLAHDLTSFRLPDAPAWLTNLPVVGDSLQKLWQSTQ 135

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                              ++    +  G+  L+  L+I    + L     +G  +   +
Sbjct: 136 ADLPGFFEKVRPAINQAALWLLSGGANLGLSLLEIVLAIAVAGLLL----INGDKLWDLV 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +   L       +  ++ + IRS   G+   A+ + ++      +AGVP  + LG + 
Sbjct: 192 ERIVVKLGGETAGDLPEVIARTIRSVTTGVVGTALAQTILCVIGLLIAGVPGALVLGFLC 251

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+A+      + +   + ++   G+      L +WG + +  +D  L+P L+    ++P
Sbjct: 252 FIVAVAQMPTLVVWLPAAAWVFYTGHTGLGVFLLIWGFLLINTIDNILKPLLISQGAQMP 311

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               F G++GG+   G++GLFIGP L+A+   + +  +      +
Sbjct: 312 LSVIFLGVIGGLIAWGVIGLFIGPTLLAVGLTMLRHWLQREDNEE 356


>gi|237809884|ref|YP_002894324.1| hypothetical protein Tola_3150 [Tolumonas auensis DSM 9187]
 gi|237502145|gb|ACQ94738.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 356

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/351 (21%), Positives = 149/351 (42%), Gaps = 6/351 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               I   +++ I+  +   +  F    L A+I+   +W  ++   ++        A++ 
Sbjct: 9   TQTLIALLLLVSIVGAAFIVIAPFLVATLWAIILVSATWDQFAWLSARFGGRDGVAAMLV 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG--IPVPRWLSDIPGGMWASELWT 124
              +M   +VPL+F       ++  L   +    + G    +P+WL D+P      +   
Sbjct: 69  VTILMLFIMVPLVFASVEFAQQLTVLARDLQHQIESGVWPALPQWLLDVPYAGEWLQAEW 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L       +     L T     +   A  FG   L   +S++   +     Y  G +I
Sbjct: 129 LGLQQLDMQVLNQLKGLVTPLAKIMLSMAGSFGAGMLMLLISLLIAGV----LYAHGETI 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + +    + P    ++  +    IR    G    AI +G      Y LAG+P  ++L
Sbjct: 185 HRWVLAFSHKVAPKEGIRLLHVAHTTIRGVVNGFIGAAIAQGAFAWFGYALAGIPHALSL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+ T+++++IPGG  +       +L  +G++  A  + +W    +  +D  ++  ++G  
Sbjct: 245 GLATSLISVIPGGPMLLSIPAIGWLYQQGSVGWAIFVAVWILFAVGSIDNVVKSLVIGRS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             LP +   FG+ GG  + GLLG+F+GP+L+AL+  + K  + A +   + 
Sbjct: 305 SPLPIVLILFGVAGGAISFGLLGVFLGPILLALVYALLKNWVNADEAADQT 355


>gi|154502815|ref|ZP_02039875.1| hypothetical protein RUMGNA_00629 [Ruminococcus gnavus ATCC 29149]
 gi|153796698|gb|EDN79118.1| hypothetical protein RUMGNA_00629 [Ruminococcus gnavus ATCC 29149]
          Length = 450

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/373 (12%), Positives = 110/373 (29%), Gaps = 32/373 (8%)

Query: 12  MRWMIMFIILVSLYF--------------LKGFFAPVLSALIIGFTSWPIYS-------- 49
           +R  ++    +  YF              +     P++  L+I +   PI          
Sbjct: 41  VRIFVVIAACIVFYFALLRMTNISEVFGKIYQVLKPIIYGLVIAYLLNPIVKLVDTHFEP 100

Query: 50  SFISKK-------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
               K          S     ++A V +  L +     +       +++++  V      
Sbjct: 101 WIKRKFPRIKNAGGISRGAGILLAIVVMFALIVALCNMMIPELYRSIRDMILTVPSQLNR 160

Query: 103 GIPVPRWLS---DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            I     +        G  A  +  +     Q+             +  +          
Sbjct: 161 FIGKMTEVMSTDQSTIGQMAEAVLKEASDALQTWMRTDLLNQVNVLMSNLTVGVINVVKE 220

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
                + +I  +  LF   +      + + ++           ++    ++     +G  
Sbjct: 221 LCYVLIGVIVSVYVLFSKEKFASQCKKLVYAIMRPSRANMVLHLTIKSNEIFGGFIIGKI 280

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           I +   G++      +  +P  + + VI  +  +IP   P      S  L++  +     
Sbjct: 281 IDSAIIGVLCFVGLSILDMPYTMLVSVIVGVTNVIPFFGPYIGAIPSAVLILLSDPKMGI 340

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++  +   +    + P ++G    L      F ++ G    G +G+ +G    A+I 
Sbjct: 341 YFIIFVFLLQQLDGNIIGPKILGDSTGLSAFWVVFSILFGGGMFGFVGMILGVPTFAVIY 400

Query: 340 VIWKESIMAIKEN 352
            I K  +    EN
Sbjct: 401 YIVKMLVNHQLEN 413


>gi|300024350|ref|YP_003756961.1| hypothetical protein Hden_2844 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526171|gb|ADJ24640.1| protein of unknown function UPF0118 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 357

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 109/347 (31%), Gaps = 9/347 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    +   +   + L     L     P +  L++ +   P+  +   +        +++
Sbjct: 3   IERHALFWIVTAVVFLYLAQLLAPVLLPFVIGLVLAYFFNPVVDAL-RRLGIPRWASSIL 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V+ L ++ L+FL    + +   LV       +    +    +    G    E    
Sbjct: 62  LLALVLFLIVLALVFLVPILVQQAAGLVEAAPRQIERIKLMIETSARDYLGTRYPEAEAT 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   S      +F+       + +     G    ++   ++   I  F+  +D   I 
Sbjct: 122 VRSALDSFASSMPSFMAG-----VAQSIWNQGAAAFNFVSFVLITPIVFFYTLKDWPKII 176

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +DS          + ++  + + + +   G   + +        A  LAG+   + +G
Sbjct: 177 SSVDSWLPRDNAGELRALAVEINQRVSAFIRGQGAVCVLLAAFYAVALSLAGLEYGLLVG 236

Query: 246 VITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + T + A IP                L           +         +    L P ++G
Sbjct: 237 LFTGLAAFIPVVGWTLGTATAITLAILQFWPETMPILIVIGIMLAGQALESAILSPNIIG 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             + L  +   F L+      G LGL +   + A I V+ + ++   
Sbjct: 297 SEVGLHPVWLIFALLTFSYLFGFLGLLVAVPVSAAIGVLVRFALKTY 343


>gi|218899559|ref|YP_002447970.1| hypothetical protein BCG9842_B0726 [Bacillus cereus G9842]
 gi|218541668|gb|ACK94062.1| putative membrane protein [Bacillus cereus G9842]
          Length = 355

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 35  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 94  PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 144 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 204 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 264 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 323

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 324 AGIVGLLISVPILAVIRTVI 343


>gi|325283522|ref|YP_004256063.1| hypothetical protein Deipr_1297 [Deinococcus proteolyticus MRP]
 gi|324315331|gb|ADY26446.1| protein of unknown function UPF0118 [Deinococcus proteolyticus MRP]
          Length = 371

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 106/347 (30%), Gaps = 7/347 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++ F        +         A +I + + P+ +     +      +  +  +
Sbjct: 21  RLVVFGLLAFAAYRFTGLISSILVNFAIAYLIAYIANPMLNWLERGRVPRGLGVLFVLLL 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L +  L  L      ++ +L+ ++    Q+                 + L      
Sbjct: 81  FGGLLTVAGL--LLGTIASQLIDLLRQLPQLVQNLEGWADSWIQWLSARGVTGLEDARAG 138

Query: 129 HPQSLKILSETFLKTNGIDF-----IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             ++++                                     ++ +++   +   D   
Sbjct: 139 MTETVQTYIRNLGDNLVPMLQRWLDPQGALLTSIATIGSVLGRLLIVMLMSVYLMLDYSR 198

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++ +  +    +     + + +    I     G  +IA+  G V+     L G+PS +A
Sbjct: 199 VNRAILKMFPRPWQPRVLEFADLAGTAIGGYVRGQLLIALFVGTVVALGLSLLGIPSALA 258

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +G +     +IP   PI     +I L     I           +   +    L P ++  
Sbjct: 259 IGFLAGAFNIIPYLGPIIGAIPAILLAAPMGITKVLLAVGVFLVANQVEGSFLSPIVLSK 318

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              L  +     ++ G   +G  G  I   L+AL  +  ++   + +
Sbjct: 319 TTDLHPITVLLSILIGASVLGFAGALIAVPLVALGKLAVEKYYYSSR 365


>gi|300022035|ref|YP_003754646.1| hypothetical protein Hden_0504 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523856|gb|ADJ22325.1| protein of unknown function UPF0118 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 604

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 92/343 (26%), Gaps = 12/343 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++  +++ +L   +    P+  A+I  F   PI                    V+  
Sbjct: 13  AALVVAALVIATLVLGRAILVPLALAVIGCFILVPIVRWLEEHSV-PEWLSVFSVVVATT 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---------RWLSDIPGGMWASEL 122
            L +   + L    +    EL +           V              D          
Sbjct: 72  GLLLGASIALSSQLLSLTAELPAYRSNVMDKVHAVIGSSAPSGVVSRAIDAVETYQKMLN 131

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L   QS +   +   K                I  +    +    +   F      
Sbjct: 132 RELKLGGEQSTEPDGKPETKVVVAQETTSDTWHGIQILAEPLAQMALTFLFTLFLLAQYR 191

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  ++  +                 + + + F G  ++    G+ +G    + GVP+  
Sbjct: 192 DLRDRIVRIFGTDNMTETTSAMSDAGERLSALFTGQVMLNASFGVFVGCVLMIVGVPNAP 251

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFL 300
             GV+  +M  +P           I L          A C     AI   ++ + L PF 
Sbjct: 252 LWGVVAFVMRFVPFIGVYVAAIPPILLAAAVDPGWTKAICTLALFAIGEPVMGQVLEPFF 311

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +G    L                G +GL +   L  ++ V+ +
Sbjct: 312 LGKRAGLSPFAMILAASFWTLVWGPIGLVLAAPLTLVVVVLGR 354


>gi|238765277|ref|ZP_04626205.1| hypothetical protein ykris0001_43250 [Yersinia kristensenii ATCC
           33638]
 gi|238696500|gb|EEP89289.1| hypothetical protein ykris0001_43250 [Yersinia kristensenii ATCC
           33638]
          Length = 367

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 142/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+     +       
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIIASFWVVQPFVMGFAWAGMVVIATWPLLIRLQNLLWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A+I T+ ++ LF++P+  L    +     L+      +   +P   WL  +P  G   
Sbjct: 66  LAAIIMTILLILLFVIPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSVPLVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   ++ I            ++   A+  G     + + +  M++     Y 
Sbjct: 126 YSGWHTLIAGGGNVLIAKVQPYVGAAATWLVAQAAHIGY----FLIHLALMVLFSILLYF 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+ 
Sbjct: 182 HGEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  I  +   G  +      I+L   G+    T L +W  +    +D  LRP+
Sbjct: 242 YATLFTVLMFICCVAQLGPLLIMIPAVIWLYWTGDSTWGTILLVWSCVV-GTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVSEAPEPEESITE 359


>gi|229093461|ref|ZP_04224564.1| hypothetical protein bcere0021_41850 [Bacillus cereus Rock3-42]
 gi|228689932|gb|EEL43736.1| hypothetical protein bcere0021_41850 [Bacillus cereus Rock3-42]
          Length = 361

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPIVIKQLQ 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 108 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGVTIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 338 SVPVLAVIRTVI 349


>gi|118479551|ref|YP_896702.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|229186630|ref|ZP_04313791.1| hypothetical protein bcere0004_41730 [Bacillus cereus BGSC 6E1]
 gi|118418776|gb|ABK87195.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228596889|gb|EEK54548.1| hypothetical protein bcere0004_41730 [Bacillus cereus BGSC 6E1]
          Length = 361

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PIVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPALMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPVLAVIRTVI 349


>gi|145598044|ref|YP_001162120.1| putative inner membrane protein [Yersinia pestis Pestoides F]
 gi|108775672|gb|ABG18191.1| membrane protein [Yersinia pestis Nepal516]
 gi|108779660|gb|ABG13718.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|145209740|gb|ABP39147.1| membrane protein [Yersinia pestis Pestoides F]
          Length = 346

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 136/341 (39%), Gaps = 6/341 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I+ S + ++ F      A ++   +WP+            +   V+ T+ ++ LF++P+
Sbjct: 3   MIIASFWVIQPFVMGFAWAGMVVIATWPLLIRLEKLLWGRRSLAVVVMTILLILLFVIPI 62

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILS 137
             L    +     L+      +   +P   W+  IP  G      W   +S   +  +  
Sbjct: 63  ALLVSSLVENSAPLIQWASSPSNLRMPNVDWMKSIPLIGDKLYSSWNTLISGGANALMAK 122

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                     +    A+  G     + + +  M++     Y  G  ++  +         
Sbjct: 123 VQPYIGATATWFVAQAAHVGY----FLIHLALMVLFSVLLYIHGEQVALGIRHFAMRAAD 178

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +  +  K IR+  LG+ + A+ + ++ G    +AG+     L V+  I  +   G
Sbjct: 179 KRGDAVVVMAAKAIRAVALGVVVTALVQAILGGIGLAIAGIQYATLLTVLMFICCVAQLG 238

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +      I++   G+    T L +W  I   + D  LRP+L+     +P +    G++
Sbjct: 239 PLLVLVPAVIWVYWTGDTTWGTILLVWSCIVGTL-DNFLRPYLIRMEADMPMILILSGVI 297

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GG+ + G++GLFIGPV++A+   +    +    E +E ++ 
Sbjct: 298 GGLLSFGMIGLFIGPVVLAISYRLISAWVHETPEPEESVTD 338


>gi|309792249|ref|ZP_07686721.1| hypothetical protein OSCT_2672 [Oscillochloris trichoides DG6]
 gi|308225790|gb|EFO79546.1| hypothetical protein OSCT_2672 [Oscillochloris trichoides DG6]
          Length = 395

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/360 (12%), Positives = 116/360 (32%), Gaps = 19/360 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    M +I   L    G   P +  +++ +   P+ +   ++         ++  +
Sbjct: 18  RWLLVLAAMLLIGWLLLSASGALTPFIIGIVLAYLLLPLVNRLNARM--PRWAAILVVYL 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLA----------NQHGIPVPRWLSDIPGGMW 118
             + + +    ++      ++ +L+S +              +    +   + +      
Sbjct: 76  GTLIVLVGFFAYIVPPLANQISQLISALPTIAQIQNWSELVMEEYQQILATVPESMRAEV 135

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              +     +   +L+    T+++  G   I    S      + + L    +   LF+  
Sbjct: 136 EQNIAVLVNNGVTTLRTNFVTYMQGLGTFLINSLLSVV--NTVTFLLGFFLIPFWLFYVL 193

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA-- 236
            D  +    LD +        +  +  I+   +     G  I+ +  G   G   ++   
Sbjct: 194 MDQQAGVAALDRMLPDWLRPDFWGLVNIIDYDVSGYVRGQLILGLAVGSAAGVGLFILEL 253

Query: 237 ---GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
               V   + L V+     ++P   PI     ++ L    +      + +   +   + +
Sbjct: 254 FGMKVDYILLLAVVAGFTELVPVIGPILGAVPAVILGFMDSPTTGIAVVILYILIQQLEN 313

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P +VG  + L        LV   +  GLLG  +   L A+   ++      + E  
Sbjct: 314 NFLVPRIVGDSVGLHPAILMVLLVVCSQVFGLLGAILSAPLGAISRDLFSYLYGRLSEPP 373


>gi|239933176|ref|ZP_04690129.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
          Length = 367

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 116/349 (33%), Gaps = 14/349 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++  ++L  + ++     P++ AL++   +WP+      ++  +    A + TV
Sbjct: 19  ELLLVLVMAAVVLWVVGWMWPVVWPLVVALLLTTLTWPLARFL-RRRGVAPALAASVVTV 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  +      +  EL   VV   +                WA+        
Sbjct: 78  LFLLVAAGTVALIAVPVASQSGELADGVVEGIRRLRE------------WAAGPPLNIDD 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    + T    +    I   A           ++ +  +  +FFF +DG      L
Sbjct: 126 DQIAHAFDAATARIQDSAGSIANTAVTGVSTVFSGVVTAVLALFLMFFFLKDGPRFLPWL 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++      + +      ++ + + + +G   WL  VP  + L V+T
Sbjct: 186 GRQLPGRLATDIPTVAARCWDSLGAFVRSQALVGLLDAVGVGLGLWLLDVPLVLPLAVLT 245

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + NA  +     +   +     +P +    + L
Sbjct: 246 FVAAFVPIVGALFAGFVAVLIALVSNGLTNALLVLAVIIVVQQLEGNVFQPIIQSRGLGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                   +  G    G+ G F+   +  LIAVIW      + +  +  
Sbjct: 306 HAAVVLLAVTLGGSLAGIAGSFLAVPVAGLIAVIWNYVREQLSDPPQDP 354


>gi|283832132|ref|ZP_06351873.1| permease, PerM family [Citrobacter youngae ATCC 29220]
 gi|291071762|gb|EFE09871.1| permease, PerM family [Citrobacter youngae ATCC 29220]
          Length = 354

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 107/355 (30%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +               S  +
Sbjct: 10  RRRFSDPEAIALLIILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTVRLE-HIGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVMPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLIKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+     + L G+   
Sbjct: 181 GQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     +V      G  G+F    L  LI  +          ++ 
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVMHAWPDGQAVDEP 354


>gi|329961809|ref|ZP_08299823.1| hypothetical protein HMPREF9446_01394 [Bacteroides fluxus YIT
           12057]
 gi|328531249|gb|EGF58093.1| hypothetical protein HMPREF9446_01394 [Bacteroides fluxus YIT
           12057]
          Length = 374

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 111/340 (32%), Gaps = 11/340 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYYG 85
           L G   P   A +I + ++P+ + F  K            A ++++ +       L    
Sbjct: 31  LSGVLLPFFIAWLIAYLTYPLVTFFQYKLRLKNRVISIFCALITLLAIGGAAFYLLVPPM 90

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   +   ++    +G         +   +  +          +   +L         
Sbjct: 91  IQEFGRVKDLLIEYFSNGAHDSNVPKTLSEFLRENIDMQFLNQLFKEESLLDALKETVPR 150

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +   +      F  + L +++++    F   D  SI++    L    +  +   +  
Sbjct: 151 LWSLLSESVNLLFSFFTFFLILLYIV----FILLDYESIAEGWAHLVPQKYRPFAVNLFN 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V   +   F G   +A+  G++    + +   P  + LG+    + M+P    I F   
Sbjct: 207 DVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNMVPYLQVIGFVPT 266

Query: 266 SIYL----LIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            I         G  F           A+   I D  + P ++G    L        L   
Sbjct: 267 IILAILKAADTGGNFWIIIASATAVFAVVQAIQDGLIVPRVMGRITGLNPAIILLSLSIW 326

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              MG+LG+ I   L  L+   ++  I+  +   +  SS+
Sbjct: 327 GSLMGMLGMIIALPLTTLMLSYYQRFIINRENIHKTESSD 366


>gi|94985813|ref|YP_605177.1| hypothetical protein Dgeo_1713 [Deinococcus geothermalis DSM 11300]
 gi|94556094|gb|ABF46008.1| protein of unknown function UPF0118 [Deinococcus geothermalis DSM
           11300]
          Length = 371

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/353 (9%), Positives = 111/353 (31%), Gaps = 7/353 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  ++ ++       ++        A +I + + P+ +    +             +
Sbjct: 21  RVAVFLLLFYLAYRLFSEIRSVVVVFAVAYLIAYLANPMLNWLE-RGRVKRGLGVFFVLL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F +    +      ++  L+S +     H   +   +    G     +  +  + 
Sbjct: 80  LFIGIFALAAALIV-TVSTQLVALISGLPAQVGHLNELLNTVFGWLGAHGIPDTDSVRMR 138

Query: 129 HPQSLKILSETFLKT-----NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             ++++   +   +        +           +        ++ +++   +   D   
Sbjct: 139 LTEAVQTALQNLGRNIVPILQNLLSSTGTILSSLVSVGSVLGQVVLILLLSVYLMLDYSR 198

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  L       +     + + +V   +     G  +IA   G+ +     L GVPS  A
Sbjct: 199 VNAALLKAFPRPWQPRVLEFTGLVGTSVGGYVRGQLVIATFIGVFVWLGLTLIGVPSAAA 258

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +G +     ++P   P+     ++ L +         + +       I    L P+++  
Sbjct: 259 IGFLAGAFNIVPYLGPVIGATPALLLALPFGWVKMLLVIVIFVAANQIEGNFLSPYILSK 318

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
              L  +     ++ G   +G  G  +    +AL  ++ ++     +   E  
Sbjct: 319 TTDLHPVTVLLAILIGASLLGFAGALLSVPAVALGKLMLEKYYYPSRVYTEGP 371


>gi|228470697|ref|ZP_04055548.1| hypothetical protein PORUE0001_1322 [Porphyromonas uenonis 60-3]
 gi|228307554|gb|EEK16550.1| hypothetical protein PORUE0001_1322 [Porphyromonas uenonis 60-3]
          Length = 401

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 114/325 (35%), Gaps = 21/325 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
              + + VL AL I           + +K    ++ A + TV  +  F++P+L +    +
Sbjct: 39  ALPYMSGVLGALTIYVLLRGQMKWLVERKHWGRSWAASLLTVEAIFFFLIPILGIVLMLI 98

Query: 87  LEMKEL-VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
                     + +       + + + D  G    SE                        
Sbjct: 99  DLFSTFDPESLNVLTTQAQEMIQQVEDRFGIELWSEEN------------------LQKL 140

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                            + L+   ++  L+F  R        ++ L         + +S 
Sbjct: 141 TSVSTSLVKGLLQGMSSFFLNAFVILFLLYFMLRGYDHFESAVEELLPF-TGKNKRTVSS 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
               +++S  +G+ ++A+ +G+     Y + GV   +   V+T    +IP     I +  
Sbjct: 200 ETISIVKSNAIGIPVLALVQGVFAYIGYLIFGVEDALLFAVLTTFTTIIPVLGTMIVWVP 259

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           ++I + I G+  NA  L  +G I +  VD   R  L      +  L T FG+  G+   G
Sbjct: 260 MAIIMGINGDWLNAILLGAYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFG 319

Query: 325 LLGLFIGPVLMALIAVIWKESIMAI 349
             G+  GP++++LI +         
Sbjct: 320 FWGVIFGPLILSLIVLFINLYRHDY 344


>gi|30022466|ref|NP_834097.1| hypothetical protein BC4385 [Bacillus cereus ATCC 14579]
 gi|206969567|ref|ZP_03230521.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218236103|ref|YP_002369200.1| hypothetical protein BCB4264_A4510 [Bacillus cereus B4264]
 gi|296504881|ref|YP_003666581.1| hypothetical protein BMB171_C4052 [Bacillus thuringiensis BMB171]
 gi|29898024|gb|AAP11298.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206735255|gb|EDZ52423.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218164060|gb|ACK64052.1| putative membrane protein [Bacillus cereus B4264]
 gi|296325933|gb|ADH08861.1| hypothetical protein BMB171_C4052 [Bacillus thuringiensis BMB171]
          Length = 355

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 35  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 94  PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 144 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 204 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 264 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 323

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 324 AGIVGLLISVPILAVIRTVI 343


>gi|227111729|ref|ZP_03825385.1| putative inner membrane protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 369

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 138/355 (38%), Gaps = 6/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+   F +      +   ++
Sbjct: 12  LARILFSLVFITIMIIACFWVVQPFILGFAWACMVVIATWPLLIKFQALLWGRRSLAVLV 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T+ ++ LFIVP+  L    +     L+S          P   WL+ IP  G      W 
Sbjct: 72  MTLLLILLFIVPIAVLVSSVVENSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQ 131

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    S               ++   A+  G     + +    M+I     Y  G ++
Sbjct: 132 ALLQSGGSGLFAKVQPYFGKTATWLVAQAAHVGR----FLMHCSLMLIFSALLYYKGEAV 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P    L
Sbjct: 188 AKAVRHFAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLL 247

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G         I+L   G+    T L +W  +    +D  +RP L+   
Sbjct: 248 TVLMFLCCLAQLGPLPVLIPAIIWLYWTGDNTWGTILLVWSCVV-GTIDNVIRPVLIKMG 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             LP L    G++GG+   G++G+FIGPV++A+   +    +  I E +  +S N
Sbjct: 307 ADLPMLLILSGVIGGLLAFGMIGIFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 361


>gi|108760978|ref|YP_629833.1| hypothetical protein MXAN_1581 [Myxococcus xanthus DK 1622]
 gi|108464858|gb|ABF90043.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 395

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 119/332 (35%), Gaps = 2/332 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F      A ++  T + +YS    K    +   A +    V+   ++PL  L  + 
Sbjct: 25  VVRPFAKAFFLAAVLAGTFYGLYSRLSRKLRGHNNLAAGVIVSGVILALLLPLGGLTAFI 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E+ + V  V    Q                   E   + +   Q+    +     +  
Sbjct: 85  VTEVSDGVKFVSDTVQREGVEGLIGKIPSPVRGPVERLLERIPLEQAQLDETLQQQVSTQ 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                R  +             + M+IALFF   +G  +   ++S+   L     ++I R
Sbjct: 145 GGTAARAVTGAVAATGSIAFQTVMMLIALFFLLTEGARLVSWVESVSP-LRRGQTREILR 203

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
               V  +  +     A  +       + +A VP+ +    +   MA+IP         V
Sbjct: 204 EFRSVSVAVLVSSVATAGVQAAAALVGFLIARVPAALFFAGVAFFMALIPAVGAAIVVLV 263

Query: 266 SI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +   +   G+ + A  L +WG + + +VD  ++P L    +       FF L+GG+   G
Sbjct: 264 AAALMFFSGHPWAALFLAIWGTVVVGLVDNIVKPLLARRGMHQHAAIVFFALLGGLAAFG 323

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +GL +GP+++A    + +           + 
Sbjct: 324 TVGLLLGPLIVAFFLALLRIYERDYGRPTPRP 355


>gi|91228319|ref|ZP_01262248.1| putative permease [Vibrio alginolyticus 12G01]
 gi|91188135|gb|EAS74438.1| putative permease [Vibrio alginolyticus 12G01]
          Length = 347

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/348 (19%), Positives = 139/348 (39%), Gaps = 2/348 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
              ++         ++ +   ++ A II    +PI+  F  K  +     A+++ V +  
Sbjct: 1   MVALLAAAFACYLLVEPYINSIVMAFIISLLMFPIHEWFEQKIPKHPNMAALLSCVVLTF 60

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           + ++PLLF+F   + +             +G I        +  G+     +        
Sbjct: 61  IIVIPLLFVFAAIVQQGSVFSQNTYNWVTNGGIQDIFQHPFVIKGLAIVNEYLPFDKIEP 120

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                      T+    +   +++      ++ ++   M+  LFF  RD   I   +  +
Sbjct: 121 KAIAEKIGQFATSFGSNLVAISAKILGDATNFLMNFFLMLFVLFFLLRDHDKIISAIRHI 180

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L  +   +I   + +V +S  +G  + AI +GL  G   WLAG P      ++    
Sbjct: 181 LP-LSRSQEDRILTEIEQVSKSAVMGSFMTAIAQGLAGGIGMWLAGFPGLFWGTMMGFAS 239

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  + +   + YL + G++  A  L +W  + +  +D  LRP L+ G   +  L 
Sbjct: 240 FIPVVGTALIWIPAAAYLFLTGDMTWAIFLTVWSVVIVGSIDNLLRPLLMQGSAGMNTLM 299

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            FF L+GG+   GL+GL  GP++ A+  V++       K+   +  ++
Sbjct: 300 IFFSLLGGLHLFGLIGLIYGPLIFAVTMVLFNIYEEEFKDFLNQQDNS 347


>gi|56479467|ref|YP_161056.1| hypothetical protein ebA7105 [Aromatoleum aromaticum EbN1]
 gi|56315510|emb|CAI10155.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 378

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/327 (14%), Positives = 109/327 (33%), Gaps = 8/327 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              AP + A +  +   P  +  + ++        ++  + +  + ++ LL L      E
Sbjct: 43  PILAPFVIAAVFAYICDPAVNWMVRRRIPRP-LAVLLVILGLGAILLLLLLILAPMIYRE 101

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              LV ++    +            P  M    +  +  +      I        + +  
Sbjct: 102 AIALVGRLPDLIELLNSRVA-----PRLMERFGIDLQLDAAFVRTWITENWSTAQDLVPV 156

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I     + G   +     ++ + + +F+  +D   +   + ++          +I   + 
Sbjct: 157 ILGHLRQGGSALVGLAALVLLIPVVMFYLLQDWPHLVTNVQAIIPRPMLPRTLRIFHDID 216

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            V+     G   + +   +      WLAG+   + +GVIT ++  IP         ++I 
Sbjct: 217 SVLSQFLRGQLSVMLLLAVFYSVGLWLAGLKFALPVGVITGLLVFIPYVGFGGGLILAIL 276

Query: 269 LL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                         + +   +   I    L P+LVG  I L  +   F L+   +  G +
Sbjct: 277 TALLQADGWSPLIGVAIVYGLGQAIESFVLTPYLVGERIGLHPVAVIFALMAFGQLFGFV 336

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENK 353
           G+ +     A I V  +E   A   ++
Sbjct: 337 GVLVALPASAAILVGLRELRAAWLASR 363


>gi|330502637|ref|YP_004379506.1| hypothetical protein MDS_1723 [Pseudomonas mendocina NK-01]
 gi|328916923|gb|AEB57754.1| hypothetical protein MDS_1723 [Pseudomonas mendocina NK-01]
          Length = 353

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 146/349 (41%), Gaps = 3/349 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    Q     +++ + +   + L  F+  V  A+++     P+    I +    S   
Sbjct: 2   QSPTFEQKAFILLLVLVTIAFFWILLPFYGAVFWAMVLAVVFAPLQERLIRRTGGRSNLA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++ ++  + + I+P++F+    + E   L  K+                +       +L
Sbjct: 62  ALLTSIICLLVAILPVIFITSSVVAEGASLYQKLESGELDIGTYVTSFIQMLPPSIQEQL 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S    L+          G  ++       G    ++ +    M+  LFF  RDG 
Sbjct: 122 DRLGMSDLDGLREQVSKGAM-AGSQYLATKVFAIGQGTFEFFIGFFVMLYLLFFLLRDGK 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  ++ +    L     +++     +V+R+T  G  ++A  +G + G  +W  G+ S +
Sbjct: 181 ELVHKIRTTIP-LADTTKRRLQIKFTRVVRATVKGNVVVAAVQGALGGFIFWALGIYSPL 239

Query: 243 ALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GV+ A ++++P     I +  V++YL++ G++     L  +G + + +VD  LRP LV
Sbjct: 240 LWGVLMAFLSLLPAAGAGIVWAPVAVYLMLSGSLVQGIILTAFGVLVIGLVDNILRPILV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G   ++P        +GG+  +GL G  IGP++ AL    W       K
Sbjct: 300 GKDTRMPDYLILISTLGGLSLLGLNGFVIGPLVAALFVASWNLFGAKKK 348


>gi|170749965|ref|YP_001756225.1| hypothetical protein Mrad2831_3566 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656487|gb|ACB25542.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 657

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/362 (14%), Positives = 97/362 (26%), Gaps = 23/362 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +     +   +++   + +LY  +    PV  A+++ F   P              
Sbjct: 11  LRQGLPIFVALASILLVVATMAALYLAREILVPVTLAILLSFVLVPAVR-----VLRRLR 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                A + V+ +    L  +      E  +L S +    Q      + L     G    
Sbjct: 66  VPRAPAVLLVVVIVFGALFGIGSLIASEASQLASDLPRYTQVMRTKIKDLRGATAGTGTL 125

Query: 121 ELWTKHLSHPQSLKILSE---------------TFLKTNGIDFIPRFASRFGMIFLDYCL 165
                 +    +                     T   T     +      F    L    
Sbjct: 126 SRIVDMVQDLSATLQPPPAAEVRGEPGSRTHPLTVELTPARASVVDTLQTFAGPILHPLA 185

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +   ++I   F       +  +   L                    +   FL    + I 
Sbjct: 186 TTGLILIFTIFILLQREDLRNRAIRLAGGSGDLRRTTAAIDDATSRLSRFFLAQLALNIA 245

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLF 282
            GLV+G   W+ GVPS    GV+ AI+  +P         + + L               
Sbjct: 246 FGLVIGLGLWVIGVPSPTLFGVLAAILRFVPYIGAAISALLPLILAAAVDPGWSMVIATA 305

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +   I    + P L G    L  +             G +GL +   L   + V+ 
Sbjct: 306 ALFLVVEPICGHVVEPLLYGHSTGLSPVAVILAATIWTFLWGPIGLVLATPLTVCLVVLG 365

Query: 343 KE 344
           + 
Sbjct: 366 RH 367


>gi|167624368|ref|YP_001674662.1| hypothetical protein Shal_2445 [Shewanella halifaxensis HAW-EB4]
 gi|167354390|gb|ABZ77003.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 383

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 127/344 (36%), Gaps = 5/344 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   ++  +I+ +   +K F  PVL   II     PI        +      A I  
Sbjct: 19  ESAIRIGLLFILIVWTFDIIKPFVIPVLWGAIIAVALMPITQKLERALKGRRGLAASILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + L I P   +       +  ++  +   +       + ++DIP             
Sbjct: 79  LAGIILLIAPFWIVSSSIFDGVTHMIEVLQSGDVDIPGPTQKVADIPLIGDKLYDIWALF 138

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +      +L        G+              + + +S+         F       +  
Sbjct: 139 ATNLEKAVLHFLPQIKTGVTAAAGMLGSSLGSLVMFIISLAIAGG----FMAHAEKSAAA 194

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++   +   + ++ + +    IRS  LG+  +A  + +++GSA +   +P+      I
Sbjct: 195 VSTVAVRVAGKHGEEWTSLTAATIRSVLLGVVGVAFIQSILIGSALFTFSIPAAGIFTFI 254

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ +      +    +  Y+    +   AT   +W  +   I D  L+P L+G  + +
Sbjct: 255 VFILGIAQLPPLLVVLPLIFYVFSTHDSTPATIFTVW-VLIAGISDSFLKPMLMGRGVDV 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P      G +GG+ T G++GLF+G V++A+   ++   +   +E
Sbjct: 314 PMPVILIGAIGGMITAGIIGLFLGAVILAIWYELFITWLKTEEE 357


>gi|170727235|ref|YP_001761261.1| hypothetical protein Swoo_2891 [Shewanella woodyi ATCC 51908]
 gi|169812582|gb|ACA87166.1| protein of unknown function UPF0118 [Shewanella woodyi ATCC 51908]
          Length = 394

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 107/336 (31%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+       +         +A +
Sbjct: 12  KGFAIMAFIVVILAGIKAASPIVVPFVLSAFIAVICNPVIGWLTKLRVPR-----ALAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E  S++       +    W+ +            + L+
Sbjct: 67  FLMVFIVMMGLWLAQVVGSSINEFSSQLPQYRDQLVDQFGWVIEKLRTFNIIITKEQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L F   D     QQ+
Sbjct: 127 YFDPGVALSMTTNMLSGVGSVMANLFLIILTVVFMLFESETLPKKLHFALDDPDMRMQQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T+++IG G+++G    + GV   +  GV+ 
Sbjct: 187 DKFL----------------QSVNQYMVIKTLVSIGTGVIVGVGLAIIGVDYALLWGVVA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGATGLLYLGTNTVMGNVIEPKYMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 326


>gi|206581058|ref|YP_002237181.1| putative permease PerM [Klebsiella pneumoniae 342]
 gi|206570116|gb|ACI11892.1| putative permease PerM [Klebsiella pneumoniae 342]
          Length = 354

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 108/350 (30%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +           +   S T+
Sbjct: 10  RRRFSDPEAIALLVILLAGFGIMFFFSGLLAPLLVAIVLAYLLEWPTVRLE-RIGLSRTW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSLVLILFVGILLLLAFVVMPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRNRMLTVGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I   +     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVSVATWIGFILFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G       LF    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSLFAVYLIIQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     +V      G  G+F    L  LI  +       +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDGL 349


>gi|188581278|ref|YP_001924723.1| hypothetical protein Mpop_2025 [Methylobacterium populi BJ001]
 gi|179344776|gb|ACB80188.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 370

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 113/350 (32%), Gaps = 10/350 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+   I+ +++  LY L+    P ++ L + +   P+      +         ++   
Sbjct: 4   RAIIGLSILAVLVFLLYELREVMLPFVAGLALAYLLDPLADRLE-RLGLGRLAATLLILA 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +V L+ +      ++  LV+ +         +         G     +    + 
Sbjct: 63  GFVVGLVVVLIIVVPLAAGQIASLVNSLPTMVGKLQSILVE----RAGPLLQRIGGAEVV 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +             +         +     ++   +  F+   D   +   L
Sbjct: 119 NELQSSVGTLVGQGGTWFLAFLKSLWTGSQALVSIASLLVVTPVVAFYVLHDWDRMIATL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D           ++++  +   +     G +++ +  G       +L G+   V +G+I+
Sbjct: 179 DGWVPPRHRPTARRLAGEIDGAVTGFVRGQSLVCLILGSFYAVGLFLVGLNFGVLIGMIS 238

Query: 249 AIMAMIPGGAPISFT-----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  IP    ++          +     G+  +         +  F+    + P LVG 
Sbjct: 239 GFLTFIPYVGTLTGFMLSVGVALVQWWPTGDWLHIGLTVGVFLVGQFLEGNVISPKLVGD 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  +   F L+      G LGL +   + A I V+ +  I    E+K
Sbjct: 299 SVGLHPVWLMFALLAFGSLFGFLGLLLAVPVAASIGVVVRFGIERYLESK 348


>gi|228917024|ref|ZP_04080584.1| hypothetical protein bthur0012_42360 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929435|ref|ZP_04092456.1| hypothetical protein bthur0010_41200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935711|ref|ZP_04098524.1| hypothetical protein bthur0009_41560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948104|ref|ZP_04110388.1| hypothetical protein bthur0007_42300 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123931|ref|ZP_04253123.1| hypothetical protein bcere0016_42160 [Bacillus cereus 95/8201]
 gi|228659233|gb|EEL14881.1| hypothetical protein bcere0016_42160 [Bacillus cereus 95/8201]
 gi|228811462|gb|EEM57799.1| hypothetical protein bthur0007_42300 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823949|gb|EEM69768.1| hypothetical protein bthur0009_41560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830223|gb|EEM75839.1| hypothetical protein bthur0010_41200 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842631|gb|EEM87719.1| hypothetical protein bthur0012_42360 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 361

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPIVIKQLQ 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 108 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 338 SVPVLAVIRTVI 349


>gi|297537445|ref|YP_003673214.1| hypothetical protein M301_0250 [Methylotenera sp. 301]
 gi|297256792|gb|ADI28637.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 364

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 104/326 (31%), Gaps = 11/326 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           Y L     P L A I+ +   P+        + K     T   V+    +  +  + LL 
Sbjct: 31  YLLLPILTPFLVAAILAYMCDPLVDRLCLVGVGKFRIGRTLATVLVMAGIFGIITLLLLI 90

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L      E   +  ++     +           P       +            I     
Sbjct: 91  LIPLLQKESLLIAERLPSTINNIRTTVE-----PWLQSKFGISFAIDGAQIQDIITKNWK 145

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                +  +   A   GM  +    +I+ + + LF+  RD      ++  L    +    
Sbjct: 146 TAGGLLGDVLMMAGNNGMALIGIIANILLLPVVLFYLLRDWDIFVARIGQLIPREWHDKT 205

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I+  + +V+     G   + +          W AG+   + +G++  ++  +P     
Sbjct: 206 TNIASEIDQVLAEFLRGQLSVMLAMSAFYAIGLWFAGLDMALPIGLVAGLLGFVPYLGFA 265

Query: 261 SFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
               +++ +      +      + +  ++   +    L P LVG  I L  +   F L+ 
Sbjct: 266 LGVVLALVVAALEFTSFGQLIPVLIVFSLGQLVESMVLTPKLVGDRIGLHPVVVIFALLA 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKE 344
           G +  G  G+ +   + A IAV  + 
Sbjct: 326 GGQLFGFAGVLLALPVSAAIAVGLRH 351


>gi|307131465|ref|YP_003883481.1| putative inner membrane protein [Dickeya dadantii 3937]
 gi|306528994|gb|ADM98924.1| predicted inner membrane protein [Dickeya dadantii 3937]
          Length = 367

 Score =  125 bits (313), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/349 (19%), Positives = 129/349 (36%), Gaps = 4/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+          S +   ++
Sbjct: 12  LARILFSLLFIGILIIACFWVVQPFILGFAWASMVVVATWPLLIRLQQMLWGSRSLAVLV 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ LF+ P   L    +     L+S +    +   P   WL  IP           
Sbjct: 72  MTLLLVLLFVFPTSILVSSVIDNASNLISWIGAQGRITPPELDWLQSIPLVGAKLHSSWH 131

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+H     ++++       I     +          + +    M++     Y  G  ++
Sbjct: 132 SLAHSGGPALMAK---IQPYIGQTASWVVSQAAHIGRFLMHCTLMVLFSVLLYSKGDQVA 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L          +  + IR+  LG+ + AI + ++ G    LAG+P    L 
Sbjct: 189 LGVRRFAIRLGRQGGDSAVILAAQAIRAVALGVVVTAIVQSVLGGIGLALAGIPYTTLLT 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  +   G         I+L   G+    T L +W  +   + D  +RP L+    
Sbjct: 249 VLMFLSCVAQIGPLTVLIPAIIWLYWSGDTTWGTILLIWSCVVGTL-DNIIRPLLIRMGA 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP L    G++GG+   G++GLFIGPV++A+   +    +    E   
Sbjct: 308 DLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKESPEPPP 356


>gi|325264631|ref|ZP_08131361.1| putative membrane protein [Clostridium sp. D5]
 gi|324030293|gb|EGB91578.1| putative membrane protein [Clostridium sp. D5]
          Length = 398

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 118/372 (31%), Gaps = 20/372 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILV--------SLYFLKGFFAPVLSALIIGFTSWPIYSSFIS 53
           +E +   +G++ + I+ +I++        +L F+     P L    I F           
Sbjct: 5   KENLKKIRGLILFTIVVLIVLWKYSLVLDALAFVLRIVFPFLLGGAIAFILNVPMHFLEK 64

Query: 54  KK-----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
                          +     V+  + V+ +  + +  +       +  L + +      
Sbjct: 65  TLFYNKKGKVWVQRLARPLSLVLTILFVLGVISLVIFVVVPKLGSTVISLGTTIQDFVPK 124

Query: 103 GIPVPRWL-SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
                  L  +    +              +  +        + +      A        
Sbjct: 125 MQHWVEELFDNNKEIVSLVNDVQIDWDKLLNGIMEFFKNGAGSVLGSTFTVAKSIVSGVT 184

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            + ++ +F    L    R    I + + +  +         +  +  K   S   G  + 
Sbjct: 185 TFVIAFVFACYILLQKERLNIQIRKIMYAYMKKDLVKKVLDVCSLTYKTFSSFLTGQCVE 244

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A+  G +   A  +  +P  + +GV+ A  A+IP         V  +L++      A   
Sbjct: 245 AVILGTMFVIAMSVFRLPYALLVGVLIAFTALIPIFGAFIGCFVGAFLILMVAPMKALMF 304

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +   +   I    + P +VG  + LP +     +  G   MG++G+ +   +++++  +
Sbjct: 305 VIMFLVLQQIEGNLIYPKVVGSSVGLPSIWVLAAVSIGGSLMGVVGMLVFIPVVSVLYTL 364

Query: 342 WKESIMAIKENK 353
            + ++     NK
Sbjct: 365 LRNNVYGRLANK 376


>gi|320451497|ref|YP_004203593.1| permease [Thermus scotoductus SA-01]
 gi|320151666|gb|ADW23044.1| permease [Thermus scotoductus SA-01]
          Length = 365

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/334 (17%), Positives = 116/334 (34%), Gaps = 8/334 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                + +L+A  I + + P+   F +K+      L V+     + LF+    FL    +
Sbjct: 33  AWPALSILLTAFAIAYLTHPVVRFFEAKRLPR--LLGVVLVYLGLGLFLGLASFLTAQTV 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           LE+  L  ++       +     L +    +   E     L+                 +
Sbjct: 91  LELSRLAQELPALLDPFLSWLLDLPNRVRTIPIPETLRPVLAEASRNLQGLLQGFLETLV 150

Query: 147 DFIPRFAS------RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            ++    S       F    L     ++  +    +F  D   ++Q    +    +    
Sbjct: 151 RWLQGLLSQGGNLLGFFTSLLGGIFQLLTALTLSIYFLYDLPRLAQAALKVFPEPYQPLV 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +++  + + +     G  ++A   GL++G   WL GVP   +LG +  +  +IP    I
Sbjct: 211 AELAHKLDQSVGGYVRGQLLVAFLVGLLVGVGLWLVGVPLAASLGFLAGVFNLIPFVGVI 270

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                ++ L   G         L   +   +    L PF+VG   +L  +     ++ G 
Sbjct: 271 VSGVPALLLAATGGWGKVLLALLVLWLANQLEGNLLGPFIVGRSTRLHPVTAIAAILVGA 330

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              GL G  +G    A + V+ +E     +  +E
Sbjct: 331 TLFGLWGALLGVPTAAFLKVLLEEYYKKSRFYRE 364


>gi|170720411|ref|YP_001748099.1| hypothetical protein PputW619_1225 [Pseudomonas putida W619]
 gi|169758414|gb|ACA71730.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 357

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 126/352 (35%), Gaps = 8/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +      +I + LY L    +P L  +++ + + P+      +   S T+  V
Sbjct: 1   MTDMRRWIWLGAALLIALLLYGLHNILSPFLVGILLAYLADPLVDRLE-RMGLSRTWGVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +V LL L      ++  L             V         G+       
Sbjct: 60  VVFSLFTLILLVLLLILIPMLAKQLVRLYELTPQMLDWLQHVALPWVQSRLGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     +       T+ +  +   A+   +  L +  + + + +  F+  RD   +
Sbjct: 120 ----DKIKAAVSEHMGQTTDIVGMLLSQATASSLALLAWLANFVLIPVVGFYLLRDWDLM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L SL      +    ++    +V+ +   G  ++ +  G++  +   L G+   + +
Sbjct: 176 MAKLRSLLPRQRESQVVGLAAECHEVLGAFVRGQLMVMLALGVIYSAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++  + A++P    I     ++   +    G+++    +     +   +    L P LV
Sbjct: 236 GMLAGLAAIVPYMGFIIGIGAALVAGLFQFGGDLYPMLGIVAVFMVGQALEGMVLTPLLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K++ 
Sbjct: 296 GDRIGLHPVAVIFAILAGGELFGFTGVLLALPVAAVIMVLLRHVHDLYKDSD 347


>gi|146339666|ref|YP_001204714.1| hypothetical protein BRADO2660 [Bradyrhizobium sp. ORS278]
 gi|146192472|emb|CAL76477.1| conserved hypothetical protein; putative membrane protein
           [Bradyrhizobium sp. ORS278]
          Length = 359

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/349 (21%), Positives = 144/349 (41%), Gaps = 3/349 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ +++  I L   + L  F+  +L  ++      P++              A +  + 
Sbjct: 7   RVLLFLLAVITLALGWILLPFYGALLWGVVGAIVFAPLHRRVSQSMRGRDGLAAALVVLL 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + I+P   +      +   +  +V           + + D     W  +L  +    
Sbjct: 67  VVLIIIIPFSLIAAALAQQAAGVYGQVQGGQLDVTQYFQKMLDALPS-WIVDLLNRFGLG 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +      + L   G   I   A   G    ++ +S+  M+  LFF  RD  ++S+++ 
Sbjct: 126 SLAGLKDRLSALLLRGSQVIAGQALNIGQGTFEFFVSLFLMLYLLFFLLRDEETLSRRIA 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L       +      VIR+T  G   +A+ +G + G  +W  G+ + +   V+ A
Sbjct: 186 DAIP-LRDEQRDALLAKFIIVIRATMKGNLAVALAQGALGGLIFWFLGITAPLLWAVVMA 244

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            M+++P     I +  V++YLL  G+I++   L  +GA+ + +VD  LRP LVG   K+P
Sbjct: 245 FMSLLPAVGAGIVWFPVALYLLATGSIWHGVILIAYGALVIGLVDNLLRPILVGQDTKMP 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                   +GG+   GL G  IGPV+ A+   +W    +   EN+    
Sbjct: 305 DYVVLLSTLGGIEVFGLNGFIIGPVIAAMFIAVWDMFTVVRSENRAVAD 353


>gi|300172620|ref|YP_003771785.1| integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299886998|emb|CBL90966.1| Integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 372

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 104/321 (32%), Gaps = 10/321 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKE----ESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   F P+L A  + +   PI       K         F  +I  V  + +    L+ L
Sbjct: 40  FISTVFVPLLVAGFLYYVLKPILKLVTKIKIFGKSIPHQFAVIITFVLFLAVIATALIVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  L++ +    Q          +             HLS        +    
Sbjct: 100 VPTLIREITNLITAMPSFAQDMQRFATETINSRWFENL------HLSVNADQIRSAVGQY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + ++                 ++++ + + LF+   DG  +   +             
Sbjct: 154 AASFLNITAGTLGTVVSTVTSVTINLVTIPVVLFYMLSDGDRLVPAIKKAFPDRHAQKIS 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  +   I     G  I  +  G+ +   Y + G P    L V+  I  ++P   P  
Sbjct: 214 ELTTKMDNTIEKYISGQAIEMLFVGVTMAIGYLIIGQPYAWLLAVVAGITNIVPYIGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      +F+   +   +    + P ++G  + +  L     L+    
Sbjct: 274 GVIPALIVASTQSWKQMIFVFIVMTVVQQLDGNFIYPNVIGKSLAIHPLTIMLLLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIW 342
             G++G+ +   + A++ VI 
Sbjct: 334 LWGIVGMIVIVPVYAVLRVII 354


>gi|110800682|ref|YP_695022.1| hypothetical protein CPF_0568 [Clostridium perfringens ATCC 13124]
 gi|110675329|gb|ABG84316.1| putative membrane protein [Clostridium perfringens ATCC 13124]
          Length = 366

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 113/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +L       + EL+  +     +   +   +            +  +     +  I    
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTNYVQNLFTEIMASFKVPEGINSYLPYGDT--NKLITFIG 151

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + T   +++   A       +++    +  I  L    +     S+    +        
Sbjct: 152 SMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIVFGKNLGNE 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +  +I+ + I +      I ++  G++      +      + L V+  I  MIP   P
Sbjct: 212 ILEFVKILNEKIGTYVGIKAIDSLIIGVLAFIGLTIMKSEYALLLSVVVGITNMIPYFGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V  ++ +  +   A  + ++  I        L P L+G  + L       G+  G
Sbjct: 272 FIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTLG 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G +G+ +G  +M++I +   + I   +   E
Sbjct: 332 GAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|87118946|ref|ZP_01074844.1| hypothetical protein MED121_11790 [Marinomonas sp. MED121]
 gi|86165337|gb|EAQ66604.1| hypothetical protein MED121_11790 [Marinomonas sp. MED121]
          Length = 354

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 110/351 (31%), Gaps = 12/351 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  ++M   +  L FL    APVL A+++ F    + +    +   S   
Sbjct: 10  KRYFSDEEAVVFLLLMITCIAVLVFLGNILAPVLIAIVLAFLLQGVVNKVE-RMGLSHLS 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +S     +  +  +      +   L++           V +  +         +
Sbjct: 69  SVLVVFLSFSAACVAFIGIMVPVIWKQAGRLLNDAPQMLADLDAVVKTFAVEHLEYVKQD 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L +  +           N   ++  F+       +   + ++ + + +FF  +D 
Sbjct: 129 SIDDVLGNMANEL--------ANVGQWVLSFSLSSIPSIMSLMIYMVLVPLVMFFLMKDQ 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I     +          + I++ +   I +   G  I  +  G+   + + + G+   
Sbjct: 181 KQIMVWFTAWLPSE-RRMMRSIAQEMNDQIANYIRGKFIEMLVVGIATYAVFAVLGLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L +   +  +IP     + T   + +     G       + +   +   +    L P 
Sbjct: 240 ELLALFVGLSVLIPYIGAAAVTVPVVMVAFYQYGTDTMFVYVLVAYLVVQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L    + L  L     ++      G  G+F    L  L+  I        K
Sbjct: 300 LFSEAVNLHPLAIIVAVLFFGGIWGFWGVFFAIPLATLVKAILNAWPSHTK 350


>gi|253577604|ref|ZP_04854915.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251843022|gb|EES71059.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 362

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 120/349 (34%), Gaps = 20/349 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGF-----------FAPVLSALIIGFTSWPIYSSFISK 54
              +G    +I+  I+     ++ F             P+L +    +   P+       
Sbjct: 9   RWTRGAKFVLILLAIVYVFSLVRPFFRPMEAVIGALLIPLLLSGFFYYLLRPVVQYMEKH 68

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
            +   +   +I  V +  L +  +  ++     ++  LV  +           +   ++P
Sbjct: 69  -KIRRSLAILILYVVMAILAMAFIAVVWPMLQAQLINLVQNIPQFISLLEERLKEWGELP 127

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                            S    + +   + GI F+  + S F      + + +    I L
Sbjct: 128 FLASIFP--------SDSGLADNFSEYLSQGISFLTNYLSGFFSFLSQFAIVMFTFPILL 179

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           ++  ++G    + L  L    +     + +  + K +    +G  I+    G+++   + 
Sbjct: 180 YYMLKEGHRFKRSLVKLSPIRYRKEVYRATIEMDKALNDYIIGRVIVNAALGVLMFIGFL 239

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           + G+P  + L  I  IM  IP    I      + + +  +        +   +   I D 
Sbjct: 240 IIGLPYALLLTTIAVIMNFIPLFGAIISAIPIVIIGLIESPSTGIWALVIILLAQQIQDN 299

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + P++ G  + +  + T   ++G     G++G+ I   +  L+ + WK
Sbjct: 300 VISPYVFGKKLDIHPVTTILLVLGSGNWFGIIGMLIVIPVYMLLKIAWK 348


>gi|52426013|ref|YP_089150.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308065|gb|AAU38565.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
          Length = 355

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 104/351 (29%), Gaps = 11/351 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +PQ +    I+F   V++YF     AP+L AL++ +      S    K +      
Sbjct: 11  RRFSDPQAMGLAAILFFGFVAIYFFSDLIAPLLIALVLAYLLEMPISFLSDKLKLPRFLS 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++     + + I+ +  L    + +   L S +             L +    +   ++
Sbjct: 71  ILLILGGFIAVTILMIFGLIPTLINQTVNLFSDLPNMLNLSHQWVMSLPESYPELVDYQM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   +   +           +   +F+    M  +   +    + + +FF  +D  
Sbjct: 131 IDSLFITIREKTL--------AFGESAVKFSLSSLMNLVTIGIYAFLVPLMVFFMVKDQD 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +                 K+ + +   I +   G     +   +V    +   G+   +
Sbjct: 183 ELIAGFSRFLP-KNRTLASKVWQEMQLQIANYIRGKLFEILIVAVVSYIIFLFFGLRYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V   +  +IP    +  T     +     G       L     +   +    L P+L
Sbjct: 242 LLAVAVGLSVLIPYIGAVLVTIPVALVAIFQFGATPTFGYLMTAYIVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               + L  L     ++      G  G+F    L  L+  +         E
Sbjct: 302 FSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPSNEDE 352


>gi|119944689|ref|YP_942369.1| permease [Psychromonas ingrahamii 37]
 gi|119863293|gb|ABM02770.1| permease [Psychromonas ingrahamii 37]
          Length = 361

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/346 (11%), Positives = 100/346 (28%), Gaps = 12/346 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +P   + ++++       YFL G   P+  AL++ +      +  + + + + T   
Sbjct: 12  HFADPNLSVLFLLLLGAFAVFYFLGGILTPLFVALVLAYLLDWPINYLM-RLKFNRTLST 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I     + L     L +      +    +  + +           L  +   +      
Sbjct: 71  LIVMAVFLSLAFFAFLGILPTVFRQGVAFIRDLPVMFNQVQEYILTLPILYPDL------ 124

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                   +L + +      +   F+   +    +      +  I + + + F  +D   
Sbjct: 125 --IDPATFTLLVENLRTYILDTGGFLLSHSLASLLDVAALLVYCILVPLMMLFMLKDKNK 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +                 ++   +   I +   G  I  +  G+     ++   +     
Sbjct: 183 LITSFVQFLP-RDRKLADQVWVEMNGQIMNYIRGKIIEILIVGIGTYFTFFFMELRYSAL 241

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L V+  +  +IP       T     +     G+      L +  AI   +    + P L 
Sbjct: 242 LAVLVGLSVLIPYIGAAVVTVPIAIVAFFQWGSSPEFFYLMVAYAIIQALDGNVIVPVLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              + L  +     ++      G  G+F    L  L+  +      
Sbjct: 302 SEAVNLHPVVIIVSVLIFGGLWGFWGVFFAIPLATLVKAVLNAWPN 347


>gi|292488148|ref|YP_003531029.1| hypothetical protein EAMY_1671 [Erwinia amylovora CFBP1430]
 gi|292899359|ref|YP_003538728.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199207|emb|CBJ46322.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553576|emb|CBA20621.1| UPF0118 inner membrane protein ydiK [Erwinia amylovora CFBP1430]
 gi|312172286|emb|CBX80543.1| UPF0118 inner membrane protein ydiK [Erwinia amylovora ATCC
           BAA-2158]
          Length = 374

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 128/351 (36%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+                + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMIKIQRLLWGRRALAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ +FI+P+  L    +     +++ +   +     +    S    G      +  
Sbjct: 70  MTLLLILVFIIPVALLVNSLIENSAPMIAWLGSGHLQMPDLHWLRSTPLVGRKLYSAYHN 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   S  +            F    A  FG     + + +  M++     Y  G  + 
Sbjct: 130 LFAGGGSALLAQVQPYIGRTTGFFFAQAGHFGR----FMMHLGLMLLFSVLLYWRGEQVG 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P    L 
Sbjct: 186 QGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAISGIPFATILT 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  ++  G  I      I+L   G+    T L +W  +   + D  LRP L+    
Sbjct: 246 VLMILSCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSCVVGTL-DNVLRPMLIRMGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            LP +    G++GG+   G++GLFIGPV++A+   +    +       E  
Sbjct: 305 DLPMILILSGVIGGLVAFGMIGLFIGPVVLAISYRLVSVWVHETPAPHENP 355


>gi|229105024|ref|ZP_04235678.1| hypothetical protein bcere0019_41600 [Bacillus cereus Rock3-28]
 gi|228678401|gb|EEL32624.1| hypothetical protein bcere0019_41600 [Bacillus cereus Rock3-28]
          Length = 361

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPVVIKQLQ 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 108 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVEMKIQTLL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 338 SVPILAVIRTVI 349


>gi|158522017|ref|YP_001529887.1| hypothetical protein Dole_2006 [Desulfococcus oleovorans Hxd3]
 gi|158510843|gb|ABW67810.1| protein of unknown function UPF0118 [Desulfococcus oleovorans Hxd3]
          Length = 363

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 118/360 (32%), Gaps = 12/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I+ + I+ +  V +  +    APV++A++I +    + +    + + S   
Sbjct: 10  RRYANDPQIIILFAILVVGFVLVLTMGDMLAPVIAAIVIAYLLEGLINVLE-RLKVSRMI 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V      +   +  ++F       ++ E+  ++     +G      L +    + A E
Sbjct: 69  ALVTVFTLFLAGMVAVIVFFLPLLSRQIAEMFQELPALMANGQKQLMRLPERYPELIAQE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             ++ +S           F  T     +   +       +   + +I + + +FFF +D 
Sbjct: 129 QISQFIS--------FLKFEITQWGQHLVSISIASVRGLITVVVYLILVPLLIFFFLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L             ++   V + I +   G     +       + +   G+   
Sbjct: 181 TKILGWLKLFLPKNTR-LAAEVWHEVNQQIANYVRGKIWEILIVWTAAYALFAALGLKFA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V + +   +  + P             +     G   + T + +   I   +    L P 
Sbjct: 240 VLISLAVGLSVLAPYIGATLMFFPVALVAFFQWGLSPSFTWIVVGYLILQALDGNLLAPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L+   + L  +     L+      G+ GLF    L  L+  + K     +KE     +  
Sbjct: 300 LLSEVVDLHPVAIIVALLVFGGIWGMWGLFFAIPLATLVHAVLKTWFRYMKEKNPPATEE 359


>gi|212635770|ref|YP_002312295.1| hypothetical protein swp_2989 [Shewanella piezotolerans WP3]
 gi|212557254|gb|ACJ29708.1| Membrane protein, putative [Shewanella piezotolerans WP3]
          Length = 386

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 129/352 (36%), Gaps = 5/352 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   ++  +I+ +   +K F  PVL   II     P+        +      A I  
Sbjct: 19  ESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALMPLTQKLERALKGRRGLAATILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L I P + +       +   ++ +           + ++DIP             
Sbjct: 79  LGSIILLITPFILVSSSIFDGVSHTIAVLQSGEIRIPGPTQKIADIPLIGDKLFDAWALF 138

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S      ++       + +  +           + + +S+         F       +  
Sbjct: 139 STNLEKAVIHFLPQIKSAVGTMAGVLGSGVGTLVMFIVSLAIAGG----FMAHAEKSAAA 194

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++   +   + ++ + +    IRS  LG+  +A  + +++GSA +   +P+      I
Sbjct: 195 VSTVAVKVVGKHGEEWTTLTAATIRSVLLGVVGVAFIQAILIGSALFTFSIPAAGLFTFI 254

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ +      +    +  ++    +   AT   +W  I   + D  L+P L+G  + +
Sbjct: 255 VFILGIAQLPPLLVVLPLIFFVFSTHDSTPATIFTVW-VIIAGVSDSFLKPMLMGRGVDV 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           P      G +GG+ T G++GLF+G V++A+   ++   + +     +   S+
Sbjct: 314 PMPVILIGAIGGMITAGIIGLFLGAVVLAIWYELFITWLKSEDGRDKDALSS 365


>gi|153854815|ref|ZP_01996049.1| hypothetical protein DORLON_02047 [Dorea longicatena DSM 13814]
 gi|149752722|gb|EDM62653.1| hypothetical protein DORLON_02047 [Dorea longicatena DSM 13814]
          Length = 385

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 108/341 (31%), Gaps = 13/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------EESSTFLAVIATVSV 70
           +++ +  F+     P L    I F      +    K         +    +   I+ + V
Sbjct: 30  VVISAFQFVLNIVYPFLLGGAIAFALSVPMNFVERKLFTERKISEKYKRKYARGISLMLV 89

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSH 129
           +      L  + +  + ++    + +  + Q  IP  + W                +L  
Sbjct: 90  IAGVTGILAMIIFGLLPQLAGTFANLGKSIQEFIPQVQGWADHWFHNNKEIMNVVNNLEF 149

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +  + +      NG   +           +    +     +   +       +  Q  
Sbjct: 150 DWNKIMEAAAGFLKNGAGSVLETTINTAKNIIGAVGTFFIAFVFAVYILLQKEKLRIQAK 209

Query: 190 SLGEHLFPAYWKKISRIV----PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +          +    V     K       G  + A+  G +      L  +P  +  G
Sbjct: 210 KVLFAFVRKGRAEAVLEVLALTYKTFSGFLTGQCVEALILGAMFVITMTLFRLPYALLTG 269

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A  A++P        AV  +L+   + F A    +   +   I    + P +VG  +
Sbjct: 270 IVIAFTALVPVFGAFIGCAVGAFLIFMVSPFKALMFIVLFLVLQQIEGNLIYPHVVGNSV 329

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G   MG++G+ I   LM+++  +++E +
Sbjct: 330 GLPSIWVLAAVSVGGSLMGIVGMLIFIPLMSVVYALFREVV 370


>gi|148264677|ref|YP_001231383.1| hypothetical protein Gura_2633 [Geobacter uraniireducens Rf4]
 gi|146398177|gb|ABQ26810.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 365

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/349 (20%), Positives = 138/349 (39%), Gaps = 7/349 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             +    +    I  +   S + L+ FF  ++ A +I  T+WP+      +         
Sbjct: 8   PDIARTTLAVLFIGILTAASFWILRPFFTALVWATMIVVTTWPLMLGVQKRLRGKRALAV 67

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG--GMWASE 121
              TV+++ +FIVP        +    E+V          +P P    +     G   + 
Sbjct: 68  TAMTVALLLVFIVPFTLAIISIIERSDEIVGWSKSLATFTMPPPPEWVEQLPLAGPKLAA 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W    +  Q+             + ++   A   GM+ + + L++I   +     + +G
Sbjct: 128 RWHYLTTVGQAELSERLAPHAKEIVSWLVTRAGNVGMMIVQFLLTVIISAV----LFANG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              +  +      L     +    +  K IR   LG+ + A+ + L+ G    +AG+P+ 
Sbjct: 184 EKAASGICLFARRLGDRNGEDAVILAAKAIRGVALGVVVTAVIQSLLAGIGLVVAGIPAP 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I+ +   G  +    V ++L         T + +WG I    +D  +RP L+
Sbjct: 244 GLLTVVIFILCVAQVGPGLVLIPVIVWLYWVDQALWGTAMIVWGIIV-GTIDNFIRPVLI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                LP L  F G++GG+   G++GLFIGPV++A+   +    I   +
Sbjct: 303 KKGADLPLLLIFAGVIGGLIAFGVIGLFIGPVMLAVTYTLLGAWITRGR 351


>gi|127511625|ref|YP_001092822.1| hypothetical protein Shew_0691 [Shewanella loihica PV-4]
 gi|126636920|gb|ABO22563.1| protein of unknown function UPF0118 [Shewanella loihica PV-4]
          Length = 377

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 126/347 (36%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  +++ +   ++ F  P L   II     P+        +      A +
Sbjct: 17  MTESAIRIGLLAILVIWTYDIVRPFIVPALWGAIIAVALMPLTHRLERMLKGRRGLAATL 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + P + +       +   +  +     H     + +++IP           
Sbjct: 77  IALVGIALLVTPFVVVSGSIFEGVSNTLKVLQSGEIHLPEPTQRVAEIPIIGERLFEVWH 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +++      IL        G   +           + + +S++        F  +    +
Sbjct: 137 NIASNLEKAILHFLPEIKAGFSALAGVIGSSLATLVMFIISLLIAAG----FMANSEQCA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +            + +    IRS  LG+  +A  + +++GSA ++ G+P+   L 
Sbjct: 193 AAMSKVAVRAVGPNAHAWTSLTAATIRSVLLGVVGVAFIQAMLIGSALFVFGLPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++   + +    A I    +  Y        +AT   +W  +   I D  L+P L+G  +
Sbjct: 253 LVALFLGIAQLPALIIVLPLIGYAYSSMEGTSATIFSVWIFLG-GISDNILKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +P      G +GG+   G++GLF+G V++A+   ++   +   +  
Sbjct: 312 DVPMPVILIGAIGGMLFAGIIGLFLGAVVLAIWYELFIAWLNGGEPE 358


>gi|326571447|gb|EGE21462.1| hypothetical protein E9S_02469 [Moraxella catarrhalis BC7]
          Length = 369

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 113/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K    P ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTDSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYAW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +      + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDTYLRSD 354


>gi|222111100|ref|YP_002553364.1| hypothetical protein Dtpsy_1907 [Acidovorax ebreus TPSY]
 gi|221730544|gb|ACM33364.1| protein of unknown function UPF0118 [Acidovorax ebreus TPSY]
          Length = 352

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 125/333 (37%), Gaps = 3/333 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
                L      +   +++     P++     +        A+      + + I+P+  +
Sbjct: 21  AFGAILWPLNGAIFWGVVLAILFTPLHRRLQRRMPRRRNLAALATLGVCLVIVILPVTLI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E      +      +     + +       W  EL  +     ++      T +
Sbjct: 81  GASLVQEASVAYERARSGQLNFGAYLQQVLAALP-PWMLELLDRFHLTTRAELQARLTTI 139

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 F+   A   G   L + +S   M+  LFF  RDG  ++ ++          + +
Sbjct: 140 GAQASQFLATKALDVGQNTLQFVVSFGVMLYLLFFLLRDGARLAARIREAIPLDAR-HKE 198

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-I 260
           +++     VIR+T  G  ++A  +G + G  +WL  +   V  GV+ A ++++P     +
Sbjct: 199 QLAIKFTTVIRATVKGNIVVAAAQGALGGLIFWLLNIQGPVMWGVLMAFLSLLPAVGASL 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+IY L  G    A  L  +G   + +VD  LRP LVG   KLP        +GG+
Sbjct: 259 IWGPVAIYFLATGAPGQAVILTAYGVFVIGLVDNVLRPVLVGKDTKLPDYVVLISTLGGM 318

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              GL G  IGP++ AL    W          +
Sbjct: 319 ALFGLTGFVIGPMIAALFIATWDLFAPHDGSER 351


>gi|295697169|ref|YP_003590407.1| sporulation integral membrane protein YtvI [Bacillus tusciae DSM
           2912]
 gi|295412771|gb|ADG07263.1| sporulation integral membrane protein YtvI [Bacillus tusciae DSM
           2912]
          Length = 418

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 115/344 (33%), Gaps = 3/344 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R      +  +  + M ++  +      +  P +  L+      PI S     +    T
Sbjct: 15  LRYFRKLAETALLVLFMIVVSWAFLRTLPYTMPFVIGLVTAVLLQPIVSLLERWRV-PRT 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              + A V ++ +  + L+++      E+  L  ++            +     G     
Sbjct: 74  AAILTAMVVILGVISLGLVYVVVQIAQEVAVLSGQLPQIYASVRDWISY-QFQYGREIVP 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              +  +           +   +  +D++  +         ++   ++  II+ +FF RD
Sbjct: 133 PSMSAEMEAMLQHFTQLGSTEVSRLLDYVLSWLHGL-TGLPEWITVLVLAIISTYFFLRD 191

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I++ L S+    +      + R V   +        I+ +    +      +  V  
Sbjct: 192 RERIARGLVSVLPPSWDLKLTAVFRDVAHAMTGMVRAQLILTLITMAMSIIGLLVFRVEY 251

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + +G +  +  ++P    +  T       +    +      L     + +V   + P +
Sbjct: 252 AITIGTLIGLTGLVPIVGSLIVTIPWAGWCLITGQYTLGLEILALQGVISLVRHIIEPKI 311

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +   + L        +  G + +G+LGLF+GPVL   I  + + 
Sbjct: 312 LADNMGLDTFSALIAVYVGWKILGVLGLFVGPVLWVGIVSLVQA 355


>gi|238897271|ref|YP_002922948.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465026|gb|ACQ66800.1| putative permease [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 354

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 112/350 (32%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +   +I+      LYFL G  AP+L A+++ +      S        S   
Sbjct: 10  RRHFTDPQVVALLIILVGGFCILYFLSGILAPLLVAIVLAYLLEWPTSKLQ-VLGCSRLC 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I     + + ++ +  +      +   L S +             L+     +    
Sbjct: 69  AVSIIQALFVGVGLLAIFVVVPNVWQQGMNLTSDMPKMLNQFNNFSSTLTKRYPTL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +         D + + +    +  L   + +I + + +FF  +D 
Sbjct: 125 ----VDAGIVDMIADNLRNRLAGVGDSVVKISLASLIGLLTLAIYLIVVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      +      +   K+ + + + I +   G  +  +   +     +W+  +   
Sbjct: 181 KQMLNNFQKILP-RDRSLAGKVWKEMNQQITNYIRGKVLEMVIVAVATYLVFWILDMRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   + + +     +A    L +   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVAMFQWGIDAHFWTLLIAYLVVQALDSNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L +L+  + +     +
Sbjct: 300 LFSEAVNLHPLMIILSVIIFGGLWGFWGVFFAIPLASLVKAVIQAWPKEL 349


>gi|229062085|ref|ZP_04199410.1| hypothetical protein bcere0026_41570 [Bacillus cereus AH603]
 gi|228717237|gb|EEL68912.1| hypothetical protein bcere0026_41570 [Bacillus cereus AH603]
          Length = 361

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 111/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 EMKIQTLLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +   F L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLIKAGIMIAILQFLESNILSPYIVGKSLRMHPVIIMFALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPILAVIRTVV 349


>gi|226359623|ref|YP_002777401.1| hypothetical protein ROP_02090 [Rhodococcus opacus B4]
 gi|226238108|dbj|BAH48456.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 388

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 104/343 (30%), Gaps = 15/343 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G     + + ++  +   +G    +  A  +     P  S  +               V 
Sbjct: 60  GAAGVAVTYALIEVVLAARGVLVLIAVAAFLAIGLEPAVSWLVRH-GFPRWAAVATVFVV 118

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              +    L       + +   LV        H       L ++              S 
Sbjct: 119 AFAMLAGFLAAAIPPMVTQGAALVHNAPDYLGHLEQRYPVLQEL--------------SA 164

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+      L       +       G          + +++   +F  D   I   L 
Sbjct: 165 RFHLQDELRRALDAGNAPMVLGGIVGAGKFVFSAISGTVIVVVLTAYFLADFGHIRASLY 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  +        I   +   +    LG  +I++   ++         VP  + L V+ A
Sbjct: 225 RLAPNSRRPRTILIGDEIFAKVGGYVLGNLLISLITAVLTFVWLVAFDVPYPLLLAVLVA 284

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP         V   + +  ++  +    ++        D  L P ++G  +K+P 
Sbjct: 285 VLDLIPVVGSTLAGVVVALVALTVSLPVSLATVVFFIALRLFEDYLLVPRIIGRTVKVPP 344

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + T   ++ G   +G++G  +   + A + ++ +E++    + 
Sbjct: 345 MVTVVAVLIGGALLGIVGALLAIPVAAAVLLLARETVFPQLDR 387


>gi|29653987|ref|NP_819679.1| riboflavin transporter [Coxiella burnetii RSA 493]
 gi|154706622|ref|YP_001424066.1| riboflavin transporter [Coxiella burnetii Dugway 5J108-111]
 gi|161831036|ref|YP_001596575.1| hypothetical protein COXBURSA331_A0764 [Coxiella burnetii RSA 331]
 gi|29541250|gb|AAO90193.1| riboflavin transporter [Coxiella burnetii RSA 493]
 gi|154355908|gb|ABS77370.1| riboflavin transporter [Coxiella burnetii Dugway 5J108-111]
 gi|161762903|gb|ABX78545.1| putative membrane protein [Coxiella burnetii RSA 331]
          Length = 363

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 118/355 (33%), Gaps = 12/355 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P+ +  +  +F + + + F   +  PV+ ++++ +            +       
Sbjct: 18  RHFSDPEALALFFTLFFVFLLIEFFGKYLLPVVISVVLAYLFASPVRWLERWRFPH-WAA 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I  +  + +F++ L  L      ++  +V +   A   G             ++ ++ 
Sbjct: 77  VTIVYLFFLGIFLLALFGLLPLMWKQLASMVHEFPKAITKGQAWMTEYMHRYPKLFPTDP 136

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                 +                  FI  F+       ++  L ++ + + +FFF +DG 
Sbjct: 137 IANLAGYLHQQSAR--------IGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGG 188

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           SIS  L            + +   + + I +   G  I  I   +V   A+ L G+    
Sbjct: 189 SISNWLSRFLPERQG-LIRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFALLGLQYAF 247

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+  +  ++P    I  T       L+  G   +   L +  AI + +    L P L
Sbjct: 248 LLGVLLGLSVIVPYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLL 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               + L  +     ++      G  G+F    L  L+  +      A     E 
Sbjct: 308 FSEAMDLHPIVIILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNET 362


>gi|22297616|ref|NP_680863.1| hypothetical protein tll0072 [Thermosynechococcus elongatus BP-1]
 gi|22293793|dbj|BAC07625.1| tll0072 [Thermosynechococcus elongatus BP-1]
          Length = 395

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 116/347 (33%), Gaps = 7/347 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  +     L F     A ++ A +  F            +       A+   +  +
Sbjct: 33  ILTLNFWAFATVLKFFGPLVAVLVLASLFAFLLNYPVRWMEE-QGNPRGPSAIFVFLLAL 91

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L  +  L +      + ++L++++                    +      T  +    
Sbjct: 92  VLIAIIALVVVPNLFNQAQQLIARLPEWFNSSQRRLLEFGQWVDSLNLP--VTVDVDALA 149

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  +        +                +D  +++I  ++  F+  + G  +   L S 
Sbjct: 150 NQLLEKLKDQLQSLAREALNLILGTLSSAVDVLINLILTVVLTFYLLQHGDELWNGLLSW 209

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +       +    + +   S F+G  ++ +  G+ L + +    VP  +  GVI  +M
Sbjct: 210 LPNTVRPTVSE---TIRRSFESYFIGQLVLGLCMGIGLTTIFIFLKVPYGLLFGVIIGVM 266

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A++P G  +        L+   +++ +  +  +  +    ++  + P ++G    L  + 
Sbjct: 267 ALVPFGGTV-GIISISLLVALQDVWLSLKVAGFAFLYQQFLENVVAPRIIGSFTGLNPVW 325

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            F  ++ G R  GL+G+ I   +  +I          +   +E  ++
Sbjct: 326 VFLAILTGARASGLVGVLIAVPIAVVIKTFLVSVRSRLNSEEEADAT 372


>gi|148262712|ref|YP_001229418.1| hypothetical protein Gura_0633 [Geobacter uraniireducens Rf4]
 gi|146396212|gb|ABQ24845.1| protein of unknown function UPF0118 [Geobacter uraniireducens Rf4]
          Length = 348

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 111/341 (32%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + + I+  +++     + Y L+   +  L + ++ +   P       K +    + 
Sbjct: 4   QQSTSNRAIIGLLVIAAFFAAGYALRHTVSCFLLSFVLAYLIDPCVVYLERK-KTPRLYG 62

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + +  + +  + +L  +  L    LV  +    Q G  +     D     + ++ 
Sbjct: 63  ILIVYLVIGLVSVFCIAYLLPFTTLAWDSLVRDLPRHVQKGKEIMLGWKDQFQPAYGADE 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W        +        +                        +II   I +FF      
Sbjct: 123 WQWLFDTLSTNMNKLFAKMSAGVYAAAANVVFN--------LFNIILSPILVFFMLYYKR 174

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +I  ++ +          + + R + + +     G  ++++   ++   A +  G+   V
Sbjct: 175 NIIDEIVAWLPAAHSDNIRALGREINQSVGGYIRGQMVVSLIVAVLSTIALFYLGIDYAV 234

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             G+   + +++P    +  T   ++       +      +    A   F+    ++P +
Sbjct: 235 LNGIFAGLASILPFIGVVLATIPPLFFAYVKFQSGVVLIKVLASFAAIYFLEGYVIKPLV 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L T   ++     MG  G+ +   L A   +I
Sbjct: 295 FKESMDLNPLFTIIIVMAFGELMGFWGILLAIPLAAAFKII 335


>gi|218779980|ref|YP_002431298.1| hypothetical protein Dalk_2136 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761364|gb|ACL03830.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 365

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/350 (10%), Positives = 104/350 (29%), Gaps = 12/350 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ ++  +++   L+S+ +L     PV  +++I +    +        +      
Sbjct: 11  RYLSDPQMVVLVLMLITGLLSILYLGEMLMPVFVSIVIAYLLDGLVVRLQQ-FKIPRLAC 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  V  +   ++ +++L      ++ + + ++      G      L +      +   
Sbjct: 70  VIIVFVLFLSAMVILVVWLLPQISKQIIQFLRQLPDMLSTGQKQLMHLPEKYPEFISKAQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      S                    +       +   + ++ +   +FFF +D  
Sbjct: 130 VDQIFEMGNSAAAAFAKRA--------VSLSVASVYTLVTLVVYLVLVPFLVFFFLKDKE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +            + +   V + + +   G     +    +  + +    +   +
Sbjct: 182 IIIGWMLRFRPSDMG-LTRSVWHDVNRQVSNYVRGKGWEILIIWGLSFAVFKFLDLNYTL 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF--NATCLFLWGAIELFIVDKTLRPFL 300
            L + T +  + P             +          A               + L P L
Sbjct: 241 LLSLFTGLSVIFPYIGVTVMFFPVGLIAFFQWGVEPKALWAVASYGFIQIFDGQILAPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +   + L  +     ++      G+ GLF    L  L+ V+ +  +   +
Sbjct: 301 LSEVVNLHPVAIIIAVLFFGGIWGVWGLFFAIPLATLVNVLLRIWLDKYE 350


>gi|294139374|ref|YP_003555352.1| hypothetical protein SVI_0603 [Shewanella violacea DSS12]
 gi|293325843|dbj|BAJ00574.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 376

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 130/350 (37%), Gaps = 5/350 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   ++  ++L +   ++ F  PVL   II     P+        +      A    
Sbjct: 15  ESAIRIGLLFMLVLWTFDIIRPFVIPVLWGAIIAVALMPLTQKLEKAFKGRRGLAATAMA 74

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L ++P + +       +   +  +     +     + ++DIP             
Sbjct: 75  IIGIALLVIPFVLVSGSIFDGVSHAIEVLQSGEVNIPGPTQKVADIPVIGDKLYEIWALF 134

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S      +          +  I           + + +S+         F  +   IS  
Sbjct: 135 STNLEKAVQHFLPEIKTAVGTIASVIGSSLATLMMFIISLAIAAG----FMSNAEKISGA 190

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++   +     ++ + +    IRS  LG+  +A  + +++GSA ++  VP+   + + 
Sbjct: 191 ISTVAVRVVGKNGEQWTTLTAATIRSVLLGVVGVAFIQSMLIGSAMFVFNVPAAGLITLG 250

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ +    A I       Y+    +  +A    +W  +   + D  L+P L+G  + +
Sbjct: 251 VLILGIAQLPALIVVLPAIFYVFSTQDTTSAIIFTVW-VLLAGVSDSFLKPMLMGRGVDV 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P      G +GG+   G++GLF+G V++A+   ++   + A K  + + S
Sbjct: 310 PMPVILIGAIGGMLAAGIIGLFLGAVILAIWYELFMAWLKADKAPEAEQS 359


>gi|88657814|ref|YP_507702.1| hypothetical protein ECH_0910 [Ehrlichia chaffeensis str. Arkansas]
 gi|88599271|gb|ABD44740.1| conserved hypothetical protein [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 379

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/357 (15%), Positives = 131/357 (36%), Gaps = 14/357 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R +I+  I++ ++ +K   AP  +A+I+ +   P+      + + S      I
Sbjct: 14  LINRYVTRSVIVLAIVLVMFVIKPVLAPCCTAMIMAYLLNPLVDKLQ-RFKLSRQLSVAI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-----QHGIPVPRWLSDIPGGMWAS 120
             +S +C+ I  L+        ++  L+  ++           I + +  + I     + 
Sbjct: 73  ILLSSLCVIIAFLVSFIPLAYSQLLSLIKFLMEKVPLIHKDSIISLLQKYNMIDYEEVSD 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRF------ASRFGMIFLDYCLSIIFMIIAL 174
            +     S    L   +   L +   +F+         A    +        I+   + L
Sbjct: 133 AIKLPQASLKSLLHYENIKPLVSIFGNFLKNLDGILFSAINSSISISYTISIILITPLLL 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+   +  SI +  D+L    + +  +  ++ + +VI +   G   +     +     + 
Sbjct: 193 FYILCNWPSIVESADALVPVKYQSIARLYTKKIDQVISAYIRGQLSVCFIMAVYYIICFS 252

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIV 292
           L  +   + +G ++ IM  IP   PIS   +S    +L   +      +     +   + 
Sbjct: 253 LVKLKYFLIIGFVSGIMTFIPYIGPISCAILSSITTMLQFNDWTMCGVVVTMFIVGQLVE 312

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              + P L+G  + +  +    G++     +G  G+ +   + A++ V  +  I   
Sbjct: 313 SNIITPLLIGKRVDIHPIWIIIGMITCGSQIGFTGVLLSIPITAIVGVFVRALIAHY 369


>gi|167040126|ref|YP_001663111.1| hypothetical protein Teth514_1488 [Thermoanaerobacter sp. X514]
 gi|307724555|ref|YP_003904306.1| hypothetical protein Thet_1415 [Thermoanaerobacter sp. X513]
 gi|166854366|gb|ABY92775.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X514]
 gi|307581616|gb|ADN55015.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X513]
          Length = 341

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 122/350 (34%), Gaps = 16/350 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKG------FFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +  + ++I+    +  +F+K         +P   + +I +   P+   F SK   S
Sbjct: 1   MQIKKTYLLFLIIGATGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPMVKFFNSK-GFS 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
            +   ++  + V    +    ++    + E   L+  +    +    +   L        
Sbjct: 60  ISLSILLVFLIVASGILFFSFYIVPLLINEFIALLQMIPFYAEEIQKLLIQLKFNYLSYL 119

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++      +  SL       + +     I           L   + II + I  F+F 
Sbjct: 120 PPQVEKVLDKNLGSLNNAFTYHIDSAFKSVIT---------ILKDAVDIIIIPIVTFYFL 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     ++++ +    +   +  I + + K++         I+    +       L  V
Sbjct: 171 KDKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLSLIKV 230

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +GV+  I+ +IP   PI     ++ + +  ++       +   +   + +  + P
Sbjct: 231 KYAFLIGVLAGILNIIPYVGPILSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFITP 290

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            ++   + L  +   F L+ G    G+ GL +   ++A+I  I  E  + 
Sbjct: 291 KIMSDSVGLHPVTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIEIFIE 340


>gi|326564423|gb|EGE14651.1| hypothetical protein E9O_06681 [Moraxella catarrhalis 12P80B1]
          Length = 369

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K    P ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTDSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +  A   + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDAYLRSD 354


>gi|294814765|ref|ZP_06773408.1| Putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
 gi|294327364|gb|EFG09007.1| Putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 465

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 97/312 (31%), Gaps = 18/312 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   L  L  +            SAL+I     P  +  + +          +  
Sbjct: 98  WRLLVLAGTLWVLMRVISAVQLVVLAFASALLITALLQPTVARLL-RIGLPRGLATAVTA 156

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++   +  +   F+ +  M  +  L  +V    Q               +WA E      
Sbjct: 157 IAGFAVMALVGWFVVWQVMENLDTLSDRVREGIQELR------------LWALEGPFHVS 204

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    + +    +  + I     +     +++    +  + +  F   DG  I Q 
Sbjct: 205 EGQINDLADNLSDTIGSNTEEITSAGLQGVTALMEFLAGALLAMFSTLFLLHDGPRIWQW 264

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                   + +   G  ++A+ + + +G   W   VP  V L V 
Sbjct: 265 TLKLVPAQARPGVASAGPRAWATLTAYVRGTVLVALIDAIFIGLGIWFLDVPMAVPLAVF 324

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A +P     +S     +  L+   +F A  + +       I    L+PF++G  ++
Sbjct: 325 VFLFAFVPLVGAVLSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHVLQPFILGRAVR 384

Query: 307 LPFLPTFFGLVG 318
           +  L     +  
Sbjct: 385 VHPLAVVLSVAV 396


>gi|312130597|ref|YP_003997937.1| hypothetical protein Lbys_1882 [Leadbetterella byssophila DSM
           17132]
 gi|311907143|gb|ADQ17584.1| protein of unknown function UPF0118 [Leadbetterella byssophila DSM
           17132]
          Length = 397

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 122/338 (36%), Gaps = 22/338 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  M  + ++++   L  L+    P+  AL+I     P+ +  +  +        V++  
Sbjct: 25  KATMVLLGLYLVCQILVVLEDVLVPLAFALLISILLNPVVNKLVKWRFHR-----VLSIG 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L IV    L  +  ++       +    Q    +   L +     +          
Sbjct: 80  IALLLAIVLFGSLIAFLSVQFSSFSDLIPQLEQRVEVIWGDLQNWVRSNF---------- 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L  + +  +   G+D          M  + +  +++ + I +F             
Sbjct: 130 ---GLSTIEQKDIVEEGLDKGKSVVGDTLMSLMSFVSTLVLLPIYIFLILYYKPMFINFF 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++       ++       ++S   G+ I     G++   A  L GVP  V LGV+ 
Sbjct: 187 YEVFDYKHSQRVSEVLSETKSAVQSYIQGLMIETCIVGVLNSVALLLLGVPYAVLLGVVG 246

Query: 249 AIMAMIPGGAPISFTAVSIYLL----IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           A++ +IP    +   A+ + L        +      +    ++  FI +  + P +V   
Sbjct: 247 ALLNLIPYVGGLVAIALPVLLSLVTEDGLSYTTPLLIVASYSVIQFIDNNIIVPRVVSSK 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +++  L +   ++ G    G+ G+F+    +A++ +I+
Sbjct: 307 VEVNALISIIVVLLGGSLWGMAGMFLSIPFVAILKIIF 344


>gi|237732470|ref|ZP_04562951.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226908009|gb|EEH93927.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 354

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 105/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +               S  +
Sbjct: 10  RRRFSDPEAIALLIILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTVRLE-HIGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVMPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLIKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+     + L G+   
Sbjct: 181 GQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVMHAWPDG 348


>gi|169343072|ref|ZP_02864099.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169298982|gb|EDS81056.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
          Length = 366

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 112/335 (33%), Gaps = 2/335 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++ +++ +     P L A II +   PI + F  K + S     VI  +  +    +   
Sbjct: 34  VMSAIHTILAVLLPFLLAFIIAYILNPIVNLFSKKFKLSRGISIVITYLIFVTSISLAAT 93

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +L       + EL+  +     +   +   +            +  H     +  I    
Sbjct: 94  YLLPKLYTSLIELIDNIPAFTNYVQNLFTEIMASFKVPEGINSYLPHGDT--NKLITFIG 151

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + T   +++   A       +++    +  I  L    +     S+    +        
Sbjct: 152 SMVTVLSNWLLDAAISLTSSIINWIFGFLISIYVLVDKDKFLAHSSKVTRIIFGKNLGNE 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +   I+ + I +      I ++  GL+      +      + L V+  I  MIP   P
Sbjct: 212 ILEFINILNEKIGTYVGIKAIDSLIIGLLAFVGLTVIKSEYALLLSVVVGITNMIPYFGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                V  ++ +  +   A  + ++  I        L P L+G  + L       G+  G
Sbjct: 272 FIGMVVGFFINVFISPMKAVIVLIYLFILQQFDAWYLDPKLIGNRVGLSPFLVILGVTLG 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G +G+ +G  +M++I +   + I   +   E
Sbjct: 332 GAIYGPIGMILGSPVMSVIRIYTLKLIKKFEYRAE 366


>gi|326942172|gb|AEA18068.1| hypothetical protein CT43_CH4407 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 355

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 35  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 94  PVVIKQLQEINEQFPQFTRMYDSWMDGVTE----------QTANFPSFIHEKVKQLFVGV 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    +    + 
Sbjct: 144 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRGTGQM 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 204 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 264 AIPTLMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 323

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 324 AGIVGLLISVPILAVIRTVI 343


>gi|330836258|ref|YP_004410899.1| hypothetical protein Spico_0287 [Spirochaeta coccoides DSM 17374]
 gi|329748161|gb|AEC01517.1| protein of unknown function UPF0118 [Spirochaeta coccoides DSM
           17374]
          Length = 416

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 105/339 (30%), Gaps = 19/339 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            +P+      ++ +IL  L        P++++L +     P+      K         +I
Sbjct: 26  RSPRTFFGVFLVIVILFVLKVASEVTLPLVTSLFLFLLCNPLLDRL-DKLRTPRWLSTLI 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  +FI    F+          L+  +       I +  +++     M   +  T 
Sbjct: 85  VMLLLFLVFIGAGWFMVSTV----DTLIRHLPSYANRFILIDNYVTGKLTDMLNIDPDTT 140

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L             L  N I       +      +        + I +FF   +  S+ 
Sbjct: 141 VL-----------ALLDINWIQLAMNSLTSLSGKLMTVAKDAALIYIFIFFLLLERQSLV 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L +            +   V + +    +    I++  G++   A  L  +   V  G
Sbjct: 190 PKLRAALPTDNGRRLMIMLERVNRQVSKYLVLKLFISVVTGVMYYFAALLTHLDFPVLWG 249

Query: 246 VITAIMAMIPGGAPISFTAV---SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           V+  ++  IP    +  T +      L           + +       ++   + P L G
Sbjct: 250 VLACVINFIPAIGSVVVTTLVVLMSILQFFPIWPQVIYVAVLMISIEMVMGNIIDPRLQG 309

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + L        L       G++G+ +   L ++I ++
Sbjct: 310 VQLNLSPFVILVSLSLWGYIWGIMGMLLAVPLTSVIQIV 348


>gi|291520930|emb|CBK79223.1| Predicted permease [Coprococcus catus GD/7]
          Length = 394

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 39/363 (10%), Positives = 112/363 (30%), Gaps = 20/363 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPIY--- 48
           +    I  ++++ +   +L                   F    + A +I     P+    
Sbjct: 28  IIRYIIRAFLLLIVFAWALVNLDAVLRFLGKVLELFNPFLIGGVIAFLINVVLRPLECCW 87

Query: 49  SSFISKKEES--STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           +    K             +TV V+ +    +  +       + E +  + +  +     
Sbjct: 88  NRVCRKAPAKLTRPVCLTASTVLVLGILFAVVFMMIPSLRESVDEFIQNIPVYVEGIGRW 147

Query: 107 PRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
              ++            +               +  ++  +      A+    + ++  L
Sbjct: 148 GDGVAQFAAKYNIVLPEYAIDSDLLIEKVTALISDEESGILTVTWGAAASVLSVLVEVLL 207

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++F +  L         + + + ++           I+ +  +   +   G    A+  
Sbjct: 208 GLVFALYLLAKKEVVAAHLKKFVVTVLPQKKAQCLLSIASLTNQTFTNFVSGQLTEAVII 267

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++      + G+P   A+    A+ A++P         +  +L++      A    L+ 
Sbjct: 268 GVLCFFGMLILGLPYAGAISAFVAVTALVPIFGAWIGGGLGAFLILLAEPGKALWFILFL 327

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   +    + P +VG  + LP +     +  G    G+LG+     + A++  ++ E 
Sbjct: 328 LVLQQVEGNLIYPKVVGKSVGLPGMLVLMAVTIGGEAFGILGMLFSVPVCAVLFSLYLEF 387

Query: 346 IMA 348
           +  
Sbjct: 388 MKK 390


>gi|300722815|ref|YP_003712107.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
 gi|297629324|emb|CBJ89923.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
          Length = 369

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/337 (19%), Positives = 134/337 (39%), Gaps = 6/337 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S + L  F    + A ++   +WP+      +          I T+ ++ LF++P+  L 
Sbjct: 27  SFWVLSPFILGFIWAGMVVIATWPLLEKLQQRLWGKRWIAVSIMTLLLVLLFVLPIALLI 86

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSLKILSETFL 141
              +     L+      +   +P   WL+ +P  G      W + ++   ++ +      
Sbjct: 87  SSVVENSAPLIEWAKSPSALQLPQLNWLNQVPVIGDNLYLKWQELIADGSNMLLNKIPPY 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 +    A+  G     + L +  M+I     Y  G  +   +      L      
Sbjct: 147 IGKTATWFFTQAANAGR----FLLHLALMVIFSVLLYWKGEQVMLSIRHFAIRLADKRGD 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
               +  + IR+  LG+ + A+ + +  G    +AG+P  + L V   +  +   G  + 
Sbjct: 203 SAVLLAAQSIRAVALGVVVTALVQAIAGGIGLAIAGIPYPLILTVTMFVCCVAQLGPLLV 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                 +L   G+    T L +W  +   +    LRPFL+     LP +    G++GG+ 
Sbjct: 263 LIPSIAWLYWTGDTTWGTILAIWSLVLTTMDG-VLRPFLIRLGADLPMVLILTGVIGGIL 321

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++G++GLFIGPV++A+   +    +  + + + KIS 
Sbjct: 322 SLGVIGLFIGPVVLAVSFRLLLAWMNEVPKPEGKISD 358


>gi|117620612|ref|YP_856210.1| PerM family permease [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117562019|gb|ABK38967.1| putative permease, PerM family [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 356

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 106/347 (30%), Gaps = 12/347 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +P  +  ++++      L+      AP+L AL++ +      S    +   S T   
Sbjct: 12  RFSDPDAVTLFLLLVACFAVLWLFGDLLAPLLVALVMAYLLEWPVSRLQ-RAGLSRTLAT 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +  + L  +  L L      +   L  +      H     R L +    +    L 
Sbjct: 71  SLILLLFIALTAMAFLGLIPTLASQGLNLAKESPAMLSHAQDYVRTLPEQYPELINVTLV 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              + + +   +     L +  +  +               +  I + + +FF  +D   
Sbjct: 131 ETIIDNIRQRILTGGEQLVSASLSSLINVV--------AILIYAILVPLMVFFMLKDKQI 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L             ++   + + I +   G  I  +  G++   A+ + G+   V 
Sbjct: 183 LMGGLRRFLP-RNRTLVNRVWVEMNEQILNYIRGKVIEILIVGVISYVAFAMLGLRYSVL 241

Query: 244 LGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L V      +IP     + T     + L   G     T L +   +   +    L P L 
Sbjct: 242 LAVAVGFSVLIPYIGAAAVTVPVAMVALFQWGLTPEFTWLMVVYTVIQVLTGNVLEPILF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              + L  +     ++      G  G+F    L  L+  +       
Sbjct: 302 SEALNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVLNAWPKR 348


>gi|300716475|ref|YP_003741278.1| hypothetical protein EbC_18970 [Erwinia billingiae Eb661]
 gi|299062311|emb|CAX59428.1| uncharacterized protein [Erwinia billingiae Eb661]
          Length = 376

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 130/344 (37%), Gaps = 5/344 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I+ +I+   + ++ F      A ++   +WP+            +   +  T+ ++ LF
Sbjct: 23  FIILMIVACFWVVQPFVLGFAWASMVVIATWPLMIKLQGLLWGRRSLAVIAMTLLLILLF 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++P+  L    +     +++     +     +    S    G      +   +    S  
Sbjct: 83  VLPVSVLVNSLIDSSGPVIAWASAGHIQLPDMHWMNSIPLVGRKLFSAYHNLVQGGGSAM 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +            F+   A  FG     + + +  M++     Y  G  +   +      
Sbjct: 143 MTKVQPYIGRTSGFLFAQAGHFGR----FMMHLGLMLLFSVLLYARGEQVGHGIRHFAFR 198

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L          +  + IR+  LG+ + A+ +GL+ G    ++G+P    L V+  +  ++
Sbjct: 199 LASRRGDAAVLLAGQAIRAVALGVVVTALVQGLLGGIGLAISGIPYATVLTVVMILSCLV 258

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  +      ++L   G+    T L +W  +   + D  LRP L+     LP +    
Sbjct: 259 QLGPLVVLIPAIVWLYWTGDTTWGTVLLIWSCVVGTL-DNVLRPMLIRMGADLPMILILS 317

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++GG+   G++GLFIGPV++A+   +    +      ++    
Sbjct: 318 GVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWVHEAPAPEDDPLE 361


>gi|194446794|ref|YP_002041754.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194405457|gb|ACF65679.1| permease PerM [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 355

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 348


>gi|164687897|ref|ZP_02211925.1| hypothetical protein CLOBAR_01542 [Clostridium bartlettii DSM
           16795]
 gi|164602310|gb|EDQ95775.1| hypothetical protein CLOBAR_01542 [Clostridium bartlettii DSM
           16795]
          Length = 401

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 108/345 (31%), Gaps = 15/345 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE------------SSTFLAVIATVSVMCL 73
           +L     P +   ++ +    I   +  +                     ++  ++   +
Sbjct: 55  YLISIMYPFIIGFVLAYLLNFILKFYEERILVNIKYFNKLKQSKKRLISILLTYLTFGIM 114

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + + F+       +  +V+++    +    + +   DI      S+     L+   + 
Sbjct: 115 IYLCIHFVLPQLTESIVGIVNQIPHYMEIASKMTQ---DIIKDFDISDQMATFLNDKLNE 171

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                    +  +  I            +  L +I  +  L    +      + + ++  
Sbjct: 172 ISTRLIAFISEIVPLIANIIMSLLSSIWNIVLGLIISVYLLLDKEQFYAMSKKMVSAIFN 231

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +++            G  I +   G++    + +A +P  V + VI  +  +
Sbjct: 232 KKTADRILELTHRSNNTFGRFISGKIIDSAIIGVISFILFAIAKMPYVVLISVIIGVTNV 291

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P         L++  +   A    +   +   +    + P ++G  I +      
Sbjct: 292 IPFFGPFIGAVPCFILILFESPTKALIFLILIFLIQQLDGNVIGPKILGNSIGISAFWIL 351

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           F ++      GL+G+ IG  L A+I  I KE++      K   + 
Sbjct: 352 FAILVAGEIFGLVGMVIGVPLFAVIYSIIKENVEYKLREKNLPTD 396


>gi|266623643|ref|ZP_06116578.1| putative membrane protein [Clostridium hathewayi DSM 13479]
 gi|288864557|gb|EFC96855.1| putative membrane protein [Clostridium hathewayi DSM 13479]
          Length = 386

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 106/343 (30%), Gaps = 7/343 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCL 73
           +      L GF +P L   ++ F                           V   + V+ L
Sbjct: 31  VFEVFMMLFGFISPFLLGGVMAFILNVPMRRIEKMLPMKENSRLRRPIGLVFTLLFVVGL 90

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQS 132
            ++ +  +          L + + +             +  P  +               
Sbjct: 91  LLLVIFVVMPQLFETFMSLQNSIPVFLAGVKKGAEDLFAQNPEILDYINGIQIDWKSFSE 150

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I   +   +  ++     A         + ++++F I  L         + + + +  
Sbjct: 151 DVIGFLSSGASTVLNSTITAAVSIVSGVTTFGIALVFAIYILLQKETLSAQMKKLMRAFL 210

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                 +   ++ +          G  + A+  G +      +  +P  + +GV+ A  A
Sbjct: 211 PDRVTEHVLSVAGLAYNTFSHFLTGQCLEAVILGTMFFLTLSVLRLPYALLIGVLIAFTA 270

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP         +  +L++     +A        I   I    + P +VG  + LP +  
Sbjct: 271 LIPIFGAFIGCVIGAFLMLMVKPLDALLFVAVFFILQQIEGNLIYPHVVGNSVGLPSIWV 330

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              +  G   MG++G+ I   L +++  + + ++ A  E K +
Sbjct: 331 LVAVTIGGSAMGIVGMLIFIPLCSVLYSLLRGTVYARLEKKNQ 373


>gi|312874325|ref|ZP_07734356.1| putative membrane protein [Lactobacillus iners LEAF 2052A-d]
 gi|325911463|ref|ZP_08173875.1| putative membrane protein [Lactobacillus iners UPII 143-D]
 gi|325913113|ref|ZP_08175483.1| putative membrane protein [Lactobacillus iners UPII 60-B]
 gi|311090091|gb|EFQ48504.1| putative membrane protein [Lactobacillus iners LEAF 2052A-d]
 gi|325476813|gb|EGC79967.1| putative membrane protein [Lactobacillus iners UPII 143-D]
 gi|325477534|gb|EGC80676.1| putative membrane protein [Lactobacillus iners UPII 60-B]
          Length = 380

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPVLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFIVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIINTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        ++ +    +   M+ +            LFF  +DG  I+  L S     
Sbjct: 163 NTGKASFNLFLENLFGAVNVISMLIVTLLT----APFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|309808761|ref|ZP_07702647.1| putative membrane protein [Lactobacillus iners LactinV 01V1-a]
 gi|309810014|ref|ZP_07703861.1| putative membrane protein [Lactobacillus iners SPIN 2503V10-D]
 gi|312870682|ref|ZP_07730790.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a]
 gi|308167997|gb|EFO70129.1| putative membrane protein [Lactobacillus iners LactinV 01V1-a]
 gi|308169654|gb|EFO71700.1| putative membrane protein [Lactobacillus iners SPIN 2503V10-D]
 gi|311093793|gb|EFQ52129.1| putative membrane protein [Lactobacillus iners LEAF 3008A-a]
          Length = 380

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPMLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIVNTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        ++ +    +   M+ +            LFF  +DG  I+  L S     
Sbjct: 163 NTGKASFNLFLENLFGAVNVISMLIVTLLT----APFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|229098862|ref|ZP_04229798.1| hypothetical protein bcere0020_40860 [Bacillus cereus Rock3-29]
 gi|229117887|ref|ZP_04247249.1| hypothetical protein bcere0017_41570 [Bacillus cereus Rock1-3]
 gi|228665544|gb|EEL21024.1| hypothetical protein bcere0017_41570 [Bacillus cereus Rock1-3]
 gi|228684535|gb|EEL38477.1| hypothetical protein bcere0020_40860 [Bacillus cereus Rock3-29]
          Length = 361

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPVVIKQLQ 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 108 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVEMKIQTLL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFLESNILSPYIVGKSLRMHPVIIMLALLVGGEIAGIVGLLI 337

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 338 SVPILAVIRTVI 349


>gi|163803357|ref|ZP_02197234.1| hypothetical protein 1103602000583_AND4_14346 [Vibrio sp. AND4]
 gi|159172870|gb|EDP57710.1| hypothetical protein AND4_14346 [Vibrio sp. AND4]
          Length = 361

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/334 (20%), Positives = 134/334 (40%), Gaps = 2/334 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++ +   ++ A II    +PI+  F  K       +++++ V +  + ++PLLF+F   +
Sbjct: 29  VEPYINSIVMAFIISLLMFPIHEWFERKMPSHKNLVSLLSCVVLTFIIVIPLLFVFAAIV 88

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +             +G I        +   +     +                   T+ 
Sbjct: 89  QQGSVFSQNTYAWVTNGGIQDIFQHPFVVKALALVNEYLPFDKIEPQAIAEKIGQFATSF 148

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +++      ++ +    M+  LFF  RD   I   +  +   L  +   KI  
Sbjct: 149 GSNLVAISAKILGDATNFLMDFFLMLFVLFFLLRDHDKIISAMRHILP-LSRSQEDKILT 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + +V +S  +G  + AI +GL  G   WLAG P      ++     +   G  + +   
Sbjct: 208 EIEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPGLFWGTMMGFASFIPVVGTALIWIPA 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           + YL + G+   A  L +W  + +  +D  LRP L+ G   +  L  FF L+GG+   GL
Sbjct: 268 AAYLFLTGDTTWAIFLAVWSIVVVGSIDNLLRPLLMQGSSGMNTLMIFFSLLGGLHLFGL 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GL  GP++ A+  V++       K+   +  ++
Sbjct: 328 IGLIYGPLVFAVTMVLFNIYEEEFKDFLNRQDNS 361


>gi|326567508|gb|EGE17623.1| hypothetical protein E9Q_06383 [Moraxella catarrhalis BC1]
 gi|326576643|gb|EGE26550.1| hypothetical protein E9Y_01525 [Moraxella catarrhalis 101P30B1]
 gi|326577488|gb|EGE27368.1| hypothetical protein EA1_02853 [Moraxella catarrhalis O35E]
          Length = 369

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K    P ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTNSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +  A   + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDAYLRSD 354


>gi|261339537|ref|ZP_05967395.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
 gi|288318351|gb|EFC57289.1| putative membrane protein [Enterobacter cancerogenus ATCC 35316]
          Length = 371

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 130/349 (37%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + + + I+  L+ ++ F      A  +   +WP+            
Sbjct: 4   LRQPRDVAQILLSVLFLALMIIACLWIVQPFILGFAWAGTVVVATWPLLLRLQKMLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               ++ T+ +  LFI+P+  L    +     ++  V   +     +    S    G   
Sbjct: 64  ALAVLVMTLLLFLLFIIPIALLVNSLVDSSGPVIRAVSSGDMTLPDLAWLNSIPVIGAKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L    S  +            +    A+  G     + +    M++     Y 
Sbjct: 124 YSGWHGLLEMGGSALMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLVFSALLYW 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GVP
Sbjct: 180 RGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAILGGIGLAVSGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  +  +   G  +      I+L   G+    T L +W  +    +D  +RP 
Sbjct: 240 YATVFTVVMLMTCLAQLGPLLVLVPSIIWLYWTGDTTWGTVLLVWSCVV-GTMDNVIRPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 299 LIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHE 347


>gi|119775046|ref|YP_927786.1| hypothetical protein Sama_1911 [Shewanella amazonensis SB2B]
 gi|119767546|gb|ABM00117.1| protein of unknown function UPF0118 [Shewanella amazonensis SB2B]
          Length = 372

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 121/354 (34%), Gaps = 11/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+F +   +YF  G  AP+L AL++ F      +    +   + T 
Sbjct: 10  KDKFSDPQAVTLLFILFGLWALIYFAGGLLAPLLVALVLAFLLEWPVAQMS-RIGVNRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V    + ++ +  L      +   L++++      G+     L+       ++E
Sbjct: 69  GASLMLVLFAGIVLLMVFGLVPSLWKQGMSLLTELPAMLDKGMGYLEELTQKYPQYVSAE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     +++   +  L T  +  I +    F    L   +  I + + +FFF +D 
Sbjct: 129 QV-------IAMETELKRMLDTQHLLDIGKQILGFSASLLVLMVYTILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +              +K+   + + I +   G  I  I  G V    +   G+   
Sbjct: 182 EELIRGSKRFFP-SNRELARKVWGEMNQQIFNYIRGKVIEIIIVGAVSYVFFAFMGLRYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPIALVGFFQWGFSPEFGYLMLGYGIIQALDGNVLVPV 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  +     ++      G  G+F    L +L+  +          +K
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGFWGVFFAIPLASLVKAVVNVWPRNHTSDK 354


>gi|229827713|ref|ZP_04453782.1| hypothetical protein GCWU000182_03102 [Abiotrophia defectiva ATCC
           49176]
 gi|229787912|gb|EEP24026.1| hypothetical protein GCWU000182_03102 [Abiotrophia defectiva ATCC
           49176]
          Length = 385

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 115/345 (33%), Gaps = 10/345 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SSTFLAVIATVSVMC 72
           I   +  +    +P+++ LII +   P  +                       A V +  
Sbjct: 35  IFNGIKVVYKILSPLVTGLIIAYIIDPFVTFLKKTVFADIKNENTKKKLSVTTALVGIAI 94

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I+ ++ L    ++ ++  V  +    +       +L           +    L     
Sbjct: 95  IIILLMVALIPQIIVSIQTFVKNINTYVESLQ---HFLKTASVEAAKRNIDISGLIRFGD 151

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +           + I   +        D  +++   I  L    R   S S+ L  + 
Sbjct: 152 DTLSMIGRKIPENFNGILNTSISISKAIFDLFIAMFLAIYYLADKDRLKGSFSRLLKRII 211

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +      +         ++        I  I  G+       +AG+P  V + ++  +  
Sbjct: 212 KEDKYKAFAGFWERCNSILIRYIAFDIIDGIIVGVANFIFMSIAGIPYSVLISLVVGVTN 271

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           + P   PI    +  ++L+  N  +A    ++  I   I    L+P L GG + +P +  
Sbjct: 272 LAPTFGPIVGAIIGGFVLVLVNPLHALWFIIFTIILQTIDGYVLKPKLFGGSLGVPGVWI 331

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              ++ G R +G+ G+ +     A++  I+ + I      +E++ 
Sbjct: 332 LISIIVGSRILGVTGILLAIPFAAIVDFIYHDLIFQGARKREELE 376


>gi|332035801|gb|EGI72286.1| putative permease PerM [Pseudoalteromonas haloplanktis ANT/505]
          Length = 358

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/358 (13%), Positives = 114/358 (31%), Gaps = 12/358 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P       ++   +  LYF      PVL AL+I +           +        
Sbjct: 11  RKFSDPHSSTLLFLLLASVALLYFFGSLIVPVLVALVIAYLLDWPVVHLE-RVGLKRFSA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  +  + + +  +L +      +   LV +     + G      L +    + + E 
Sbjct: 70  TIIVMLIFISIMLTLILVIGPVLWKQTSNLVQETPHMLEQGKSYLIALPEQYPSLISIEQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  ++  I             +  F+       + + + ++ + + +FF  +D  
Sbjct: 130 VQAIVATVEAKIIE--------FGQAVLSFSLTSLKDVVAWLIYLVLVPLLVFFMLKDKL 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +  L          ++   + + I +   G     +  G V   A+ +  +    
Sbjct: 182 ELTGSIAKLIPQQ-RRLILQVWHEMNQQIMNYIRGKVFEILIVGGVSFIAFTVLDLRYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+  +  +IP       T     + L   G       + +   I   +    L P L
Sbjct: 241 LLGVLVGLSVLIPFIGAALVTIPVAAVALFQFGLETQFLDILIIYGIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               + L  +     ++      G  G+F    L +L+  +        +E  +++S 
Sbjct: 301 FSEAVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALITAWSSTHEEISKELSE 358


>gi|296169971|ref|ZP_06851578.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895375|gb|EFG75081.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 381

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/350 (18%), Positives = 131/350 (37%), Gaps = 5/350 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           LN +  +  +    +L + YFL+G+F  ++ A +  +   P+++ F  +    +   A  
Sbjct: 7   LNQKRALAILTAIALLFAAYFLRGYFVLIVVAAVGAYLFTPLFNWFGRRLG--TGLAATC 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             +  + + IVP+  L    ++++  +V  +    +   +      +        S +  
Sbjct: 65  TLLCALVIVIVPVTLLVILAIVQISRMVDSITEWVKSTDLSGLGDRTLHAVNELLSRVPF 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H++        +   +  N  ++   F             S I  +            +
Sbjct: 125 AHMTITTDNLRKAMVTVGRNVGEWALHFLQGAVGGLAGAITSAIIFLYVFVALLVHRERV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS-HVA 243
            + +  L   L              ++R T  G  +IA+ +G+   ++ ++AG       
Sbjct: 185 RKLIADLNP-LGDEVTDLYLAKAGAMVRGTVNGQFVIALCQGVAGAASIYVAGFHHGFFI 243

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             V+   +++IP G  I      I ++  GNI     + LW  + +  +D  LRP LV  
Sbjct: 244 FAVLLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGAFVVLWHLVVVTNIDNFLRPILVPR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +L        +  G+   G  G+ IGPVLM LI    +  ++  K  +
Sbjct: 304 DARLNPALMLLSVFSGIAMFGPWGIVIGPVLMILIVTTVEVYLVVFKGTE 353


>gi|284049859|ref|ZP_06380069.1| hypothetical protein AplaP_00130 [Arthrospira platensis str.
           Paraca]
 gi|291565655|dbj|BAI87927.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 387

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/337 (10%), Positives = 101/337 (29%), Gaps = 8/337 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++ + I L  L+  +     + +++I+      +      +   S      +A   V 
Sbjct: 7   IAFLFLAISLTILWEFRHILLLLFTSVILAIALNGLVRWLQ-RFRLSRGKAVFLAISLVS 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L I+    +    + + ++L++ V    +            P                 
Sbjct: 66  FLGIMFFSLIMPPFLDQFQQLLNLVPRGYERFSRWIDLTLQQPPIWLPEINLRLPGFTEI 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           + +              I           ++  L  + + +       +  S  + +  L
Sbjct: 126 ARQ-------VGPLAQNILGNFFAVFNFSVNTLLQGLLIFVFTLMLVANPASYRRLVVRL 178

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I  +    +     G+ I ++    +   +  +  V   +A  ++  + 
Sbjct: 179 FPSFYRRRADEILGLCEISLLQWMRGIAINSVFIATLSYISLTILNVEFVLAHALLAGVF 238

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P   P       + + +  +   A  + +   I   +      P ++   I L    
Sbjct: 239 NLVPNIGPTLSVVFPVSVALLDSPGKAFLVLVAYIIIQNLESYWFSPMIMQRQISLLPAA 298

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +   R +G  GL +   L  +     +++++ 
Sbjct: 299 TLMAQLFFARFLGFGGLVLALPLAVVTKTWLEQAVLK 335


>gi|238749448|ref|ZP_04610953.1| hypothetical protein yrohd0001_27650 [Yersinia rohdei ATCC 43380]
 gi|238712103|gb|EEQ04316.1| hypothetical protein yrohd0001_27650 [Yersinia rohdei ATCC 43380]
          Length = 367

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 135/357 (37%), Gaps = 4/357 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L         I+ +IL S + ++ F      A ++   +WP+     +        
Sbjct: 7   RRFDLPRLMFGVIFILIMILASFWVIQPFVMGFAWAGMVVIATWPLLIRLQNLLWGKRWL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I T+ ++ LF++P+  L    +     L+      +   +P   WL  IP       
Sbjct: 67  AVIIMTLLLVLLFVIPIGLLVSSLVENSGPLIQWASSPSNLRMPDVTWLKTIPMVGDKLY 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L       ++++       I     +          + + +  M++     Y  G
Sbjct: 127 SGWYTLIAGGGNALIAK---VQPYIGAAVTWLVAQAAHVGYFLIHMALMLLFSVLLYFHG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +              +  +  K IR+  LG+ + A+ + ++ G    LAG+   
Sbjct: 184 EQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLALAGIQYA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I  +   G  +      I+L   G+    T L +W  I    +D  LRP+L+
Sbjct: 244 TLLTVLMFICCVAQLGPLLILIPAIIWLYWTGDNTWGTILLVWSCIV-GTMDNVLRPYLI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E +  
Sbjct: 303 RMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTAAWVSEAPEPEESLQE 359


>gi|326566730|gb|EGE16869.1| hypothetical protein E9K_00398 [Moraxella catarrhalis 103P14B1]
 gi|326575270|gb|EGE25198.1| hypothetical protein E9W_04713 [Moraxella catarrhalis CO72]
          Length = 369

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K    P ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTDSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYAW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +  A   + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDAYLRSD 354


>gi|153209009|ref|ZP_01947203.1| putative membrane protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212219116|ref|YP_002305903.1| riboflavin transporter [Coxiella burnetii CbuK_Q154]
 gi|120575546|gb|EAX32170.1| putative membrane protein [Coxiella burnetii 'MSU Goat Q177']
 gi|212013378|gb|ACJ20758.1| riboflavin transporter [Coxiella burnetii CbuK_Q154]
          Length = 363

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 118/355 (33%), Gaps = 12/355 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P+ +  +  +F + + + F   +  PV+ ++++ +            +       
Sbjct: 18  RHFSDPEALALFFTLFFVFLLIEFFGKYLLPVVISVVLAYLFASPVRWLERWRFPH-WAA 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I  +  + +F++ L  L      ++  +V +   A   G             ++ ++ 
Sbjct: 77  VTIVYLFFLGIFLLALFGLLPLMWKQLASMVHEFPKAITKGQAWMTEYMHRYPKLFPTDP 136

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                 +                  FI  F+       ++  L ++ + + +FFF +DG 
Sbjct: 137 IANLAGYLHQQSAR--------IGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGG 188

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           SIS  L            + +   + + I +   G  I  I   +V   A+ L G+    
Sbjct: 189 SISNWLSRFLPERQG-LIRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFVLLGLQYAF 247

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+  +  ++P    I  T       L+  G   +   L +  AI + +    L P L
Sbjct: 248 LLGVLLGLSVIVPYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLL 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               + L  +     ++      G  G+F    L  L+  +      A     E 
Sbjct: 308 FSEAMDLHPIVIILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNET 362


>gi|226939438|ref|YP_002794511.1| integral membrane protein [Laribacter hongkongensis HLHK9]
 gi|226714364|gb|ACO73502.1| integral membrane protein [Laribacter hongkongensis HLHK9]
          Length = 367

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 122/346 (35%), Gaps = 8/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + +   L  ++ L     P  +A  + + + P+      +   + T    +  + 
Sbjct: 15  RLLLALAVVFCLWLVWHLADVLMPFAAAFALAYMAVPVVDRL-GRMGVNRTLATNLMLLL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L ++ +L +    + +++ LV ++                 P       +      +
Sbjct: 74  AIALVVLVMLLVIPMFVSQIQGLVDRLPGLVDWLERTVS-----PRIHEFFGITVHFDVN 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                + +      + +  +    +  G+  L +  +++   +  F+  RD  ++   ++
Sbjct: 129 SIKTGLAAHLGSVRSALANLLPALTSQGIALLTFLTNVLLTPLLAFYLLRDWHTLLASVE 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    + A    +   +  ++     G   + +      G  +   G+ S  A+GV+  
Sbjct: 189 RLLPPRWRAGVTSLCGQIDHMVGEYLRGQLAVMLIMAAFYGGGWLAVGLDSGFAIGVVAG 248

Query: 250 IMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++  IP         +     +L  G +     ++   A+   +    + P LVG  I L
Sbjct: 249 LLVAIPYVGAFIGVLLATMAAILQYGTLPEMLMVWSVYAVGQTLEGFVITPRLVGDRIGL 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 F L+      G +G+ +     A++ V+W+E++     ++
Sbjct: 309 HPALVIFALMAAGSLFGFVGVLLALPASAVLIVLWREALARYYASR 354


>gi|326563701|gb|EGE13952.1| hypothetical protein E9M_02143 [Moraxella catarrhalis 46P47B1]
          Length = 369

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K    P ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTNSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYAW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +  A   + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDAYLRSD 354


>gi|301307821|ref|ZP_07213777.1| putative membrane protein [Bacteroides sp. 20_3]
 gi|300834164|gb|EFK64778.1| putative membrane protein [Bacteroides sp. 20_3]
          Length = 415

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 116/354 (32%), Gaps = 11/354 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIAT 67
           + +   +++  I+  +  L+    P L A ++ +   P    F  K   +S     +   
Sbjct: 46  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V++  L  + ++ +      E  + +  +   +     VP         + ++  + + +
Sbjct: 106 VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVPLIPHSWMEYLESNVNFAQIM 165

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L         +  I                 +  +++   F   D   I+  
Sbjct: 166 ELLSKENLLKAVKQIAPQLWSILSNTFSILFS----ITIVFVILLYFIFILLDYEKIANG 221

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  V LG+ 
Sbjct: 222 WIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLAVTLGLF 281

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ +IP    I    + +  L       +          L   I   I D  L P ++
Sbjct: 282 IGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLYLTPRIM 341

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G  + L        L      +G +GL I   L  L    +K  I+      + 
Sbjct: 342 GKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEDNELDP 395


>gi|158521116|ref|YP_001528986.1| hypothetical protein Dole_1102 [Desulfococcus oleovorans Hxd3]
 gi|158509942|gb|ABW66909.1| protein of unknown function UPF0118 [Desulfococcus oleovorans Hxd3]
          Length = 365

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/335 (17%), Positives = 125/335 (37%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S   +  +  P+L ALI    + P+Y  F+ K +      A +  + +  + ++P + + 
Sbjct: 29  SYKMIAPYLDPILLALIFAAMANPVYQWFVKKTKGRENLSAGLVCLLLTLVIVIPCMIML 88

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  + V  +      G       + +              S    + + +     
Sbjct: 89  TVIIAQGIDSVGAINRWVAAGNLEKLKDAPLVRTAVDFMQRYLPSSVLAGVDLQALAIKS 148

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           ++    +    S   +  +   +   F++I +FFF                 +   +   
Sbjct: 149 SSAAGKLLVSQSGAILGNISMVVGKFFLMIFVFFFVLKDQQRLYDYILHLVPMSAEHETV 208

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +  V RS  LG  + A+ +G   G A+ + G+P      V+     +   G  + +
Sbjct: 209 LIQKMKDVSRSAVLGSFLTALAQGAAGGLAFAICGMPGFFWGAVMAFASLIPVVGTALVW 268

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              + YLLI G I     L +W  + + ++D  LRP  + G   +  +  FF ++GG+  
Sbjct: 269 VPAAAYLLISGKIGLGVFLIIWCVVVVGMIDNLLRPLFMRGGAGMSTVVIFFAILGGIHL 328

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            GL+GL  GP++  +  V+     +      +   
Sbjct: 329 FGLIGLIYGPLIFGITMVMLYIYDLEFDAFLKGQD 363


>gi|209524021|ref|ZP_03272573.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
 gi|209495693|gb|EDZ95996.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
          Length = 382

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 116/326 (35%), Gaps = 9/326 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ ++++  +  P+ +   S  +       ++  ++++       L +    + ++ 
Sbjct: 40  IILIMISVVLAASIIPLVNWAQS-LKIPRWLAVIVVYLTLIGGITGLGLIIGPSVVDQIN 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV ++ +  +  + +   ++   G      +     +   +   +            + 
Sbjct: 99  LLVRQLPIFAERSLDLISNIASSLGEDIPDLIDRLVDTQSLTNWTIR-------SSQQLI 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             +       +    S+I  +    +   D  ++ +    L  + +       ++ V + 
Sbjct: 152 LRSYGITRGIVGGVFSLILSLFVSGYMVADSKTLVKSFVQLFPYPWNERLAAQAQPVGRR 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           + S   G  I++   G+ + +     G+    + LG I     +IP   PI     ++ +
Sbjct: 212 MGSYIRGRLIVSAILGVSITTCLGFLGLKDYALGLGAIAGFTNLIPFLGPILGAIPALVV 271

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +    F    + L   I   +    L P LVG  + +  L     ++ GV+ +GL+G  
Sbjct: 272 ALAKGGFLFFWVLLLYVIVQNLETYVLDPLLVGSSVGVHPLYQLLSVLAGVQLLGLIGAL 331

Query: 330 IGPVLMALIAVIWKESIMAIKENKEK 355
           I P   A IA + +   +  K   E+
Sbjct: 332 IVPPWFAGIAALVENLYLEPKRLAEQ 357


>gi|220925388|ref|YP_002500690.1| hypothetical protein Mnod_5545 [Methylobacterium nodulans ORS 2060]
 gi|219949995|gb|ACL60387.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 375

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 111/351 (31%), Gaps = 8/351 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ML  +  +   ++ +++  LY L+    P ++   + +   PI      +          
Sbjct: 1   MLQRRATIVLALLAVVVFLLYQLRDVLVPFVAGAALAYVLDPIADRLE-RLGIGRLAATF 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                 + L ++ L+        ++  LV+ +         +    +    G        
Sbjct: 60  TILAVFVLLLVLALIIAVPLAARQIGALVATLPGTVSRIQAIIADHA----GPLLERAGG 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     +        + I  +           +     ++   +  F+   D   +
Sbjct: 116 AGTLQDLQASVGRLVGQAGSWIVNLVGSLWSGSQAIVGILSLLVVTPVVAFYLLVDWDRM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              LD           + ++R +   I S   G +++ +  G       WL G+   V +
Sbjct: 176 IATLDGWVPPRHRDTVRMLARDIDAAITSFIRGQSLVCLLLGTFYAVGLWLIGLNFGVLI 235

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           G++   +  IP    ++   +S  +       +            +  F+    L+P LV
Sbjct: 236 GMMAGFLTFIPYVGSLTGFLLSAGVAVVQFWPDWTWILATLGVFLVGQFLEGNVLQPKLV 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G  ++L  +   F L+      G LGL +   + A + VI +  +    E+
Sbjct: 296 GDAVRLHPVWLMFALLAFGSLFGFLGLLLAVPIAAALGVIARFGVRRYLES 346


>gi|322833507|ref|YP_004213534.1| hypothetical protein Rahaq_2804 [Rahnella sp. Y9602]
 gi|321168708|gb|ADW74407.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 365

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/358 (18%), Positives = 136/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +   L         I  + + S++ ++ F    + A ++   +WP+              
Sbjct: 6   KRYDLPQIMFGVLFIALMTVASIWIVQPFILGFVWAGMVVIATWPLMIKLQRLLWGRRFL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWAS 120
             +I T+ ++ LF++P+  L    +     LV      +   +P  +WL+ IP  G    
Sbjct: 66  AVIIMTLLLILLFVLPIALLVSSAVENGAPLVEIASHPSSLHMPDFQWLNAIPLVGNKLY 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   ++   +  +            +    A   G     + +    M++     Y  
Sbjct: 126 NGWHALINGGGNALMSKVQPYVGQTAAWFVTQAGHLGR----FIVHCALMLLFSALLYSR 181

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +++  +      L          +  + IR+  LG+ + AI + ++ G    +AG+P 
Sbjct: 182 GENVAMGIRHFAVRLAAERGDAAVILAGQAIRAVALGVVVTAIVQSVLGGIGLAIAGIPY 241

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  +   G  +      I+L   G+    T L +W  +   + D  LRP L
Sbjct: 242 ATVLTVVMFVCCVAQIGPLLVLIPAIIWLYWSGDNTWGTVLLVWSCVVGSL-DNVLRPVL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPV++A+   +    +    E   +   
Sbjct: 301 IRMGADLPMLLILSGVIGGLFAFGMIGLFIGPVVLAVSYRLISLWVNEAPEPDMEPEE 358


>gi|108802917|ref|YP_642854.1| hypothetical protein Rxyl_0061 [Rubrobacter xylanophilus DSM 9941]
 gi|108764160|gb|ABG03042.1| protein of unknown function UPF0118 [Rubrobacter xylanophilus DSM
           9941]
          Length = 383

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 108/339 (31%), Gaps = 6/339 (1%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            V LY     F  +   + +         +             ++  + +  L  + LLF
Sbjct: 49  GVVLYLAPIIFEILFGGIALALVLSYPVRALSQ--VMPRELAILVTVLGLFGLVALALLF 106

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + ++   V                L D+       +L  +      S  +     
Sbjct: 107 LIPLLIEQLTNFVRITPAIAASATEFFGSLDDLLNR---RDLPLQLPESFVSDLVRDLFD 163

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                ++ + R    F      + + ++ ++    +   D   +      +  H +    
Sbjct: 164 RAQQILEGMIRNLIGFISGAFSFAVGVLGVLFVAIYLLIDVRKVKAAYLRMVPHRYRWDA 223

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +++       +     G+  +   +G +  +A W+ GVP  + LG   ++ A++P   P 
Sbjct: 224 RELWDAFGVSLSRYLGGLLFVVAVQGALSAAALWVLGVPYPILLGAWVSVTAIVPYLGPF 283

Query: 261 SF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                  I  LI      A    +            L P + G  +++  +     ++GG
Sbjct: 284 LGAIPAIIVALIFTTPTTAVLTVIAYIAIQQFEGNFLTPRIQGRALQVHPIIVLLAVIGG 343

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G++G+     ++A++ V      + ++      ++
Sbjct: 344 GQIAGIVGILFAVPVLAILRVFVDFFRVRLRVGPPPRNA 382


>gi|168186309|ref|ZP_02620944.1| permease [Clostridium botulinum C str. Eklund]
 gi|169295736|gb|EDS77869.1| permease [Clostridium botulinum C str. Eklund]
          Length = 368

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 103/330 (31%), Gaps = 5/330 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            IL  L  +     P + A II +   PI      +   +         + VM L  +  
Sbjct: 31  FILKILGDIITILMPFILAFIIAYILNPIMKFIEKRIRLNRGASISCTYILVMSLITIFS 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +         ++++ +    Q                  S L        + L     
Sbjct: 91  IIIIPKVFNSGIDMINNIPDFAQKMYSWTSNHIPSKFMSSGSILRNNSGKWIEKL----- 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + + + G+  +           +++   +I  I  L+   +     ++ +  + +     
Sbjct: 146 SVMSSQGLSVVLSTIVSTTTSLINFIFGLIISIYMLYDKEKFQEISTKLIYIVLKKEKGN 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +    + V  ++ +      I +   G++      +   P  + L +I  +  MIP   
Sbjct: 206 KFISFIKTVHTMVGTYIGIKAIDSFIIGVICFIGLMIFKTPYVLILSIIVMVTNMIPYFG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P         + I  +   A  + ++  +        L P LV   + +       G+  
Sbjct: 266 PFMGMIPPFVINIFYDPKKALGILIFLILLQQFDAWILEPKLVSNSVGVSPFLVILGITI 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                G++G+ +   +MA++ +   +   +
Sbjct: 326 FGSLFGVIGMLLASPIMAVLNIYLGKWFRS 355


>gi|326561048|gb|EGE11413.1| hypothetical protein E9G_04324 [Moraxella catarrhalis 7169]
          Length = 369

 Score =  124 bits (311), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K    P ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTDSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVIRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +  A   + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDAYLRSD 354


>gi|229158006|ref|ZP_04286077.1| hypothetical protein bcere0010_41850 [Bacillus cereus ATCC 4342]
 gi|228625459|gb|EEK82215.1| hypothetical protein bcere0010_41850 [Bacillus cereus ATCC 4342]
          Length = 361

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 111/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+   ST   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPSTLAILLIYILFFGGIGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFIGV 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 150 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQI 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTSLLVKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEV 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 AGIVGLLISVPVLAVIRTVI 349


>gi|209516516|ref|ZP_03265371.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503120|gb|EEA03121.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 351

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 110/344 (31%), Gaps = 8/344 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q ++   +     + L+ L+    P L   +I +   P        +       A++  
Sbjct: 6   RQSLIWGAVALSAGILLWSLRAVLTPFLLGAMIAYILQPGVEWLARHR-TPRGLAALLMI 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                +    +L  F     E  E   +V         + +     P   W    ++  +
Sbjct: 65  SLFALVITSVVLLAFLVIQEEGPEFAEQVPSLAAKFEAILK-----PRLAWLGITYSLDM 119

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  +          +      + R+    G + +    + + + + LF+   D      +
Sbjct: 120 ASVRDWVAAHLIASEQGAALTVWRYLGTSGNVMMTVVGNAVLVPLVLFYLLYDRHEAFAR 179

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L+S     +    +     +  ++     G  ++          +  LAG+   + +G++
Sbjct: 180 LESFVPRRWLGRTRDFVAEIDHMMSQYLRGQLLVVAILAAFYPVSLALAGLAIALPIGLL 239

Query: 248 TAIMAMIPGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           TA    IP          A+   LL  G+ +    + +   +   +    L P LVG  I
Sbjct: 240 TAFAVFIPYIGFATALAMALLAALLQFGDWYGLGAVMVVYGVGQILESAILTPRLVGERI 299

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L  L   F L+   +  G  G+ +     A+ A+  +E     
Sbjct: 300 GLHPLAVIFSLLAFGKLFGFFGVLLALPASAVFALALRELRRRY 343


>gi|253682258|ref|ZP_04863055.1| membrane protein [Clostridium botulinum D str. 1873]
 gi|253561970|gb|EES91422.1| membrane protein [Clostridium botulinum D str. 1873]
          Length = 369

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 108/341 (31%), Gaps = 3/341 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +IL  L  +     P + A +I +   PI        + + T   +   + ++ L  +  
Sbjct: 31  VILKILGDIINILMPFIVAFVIAYILNPIMKFIEKNLKVNRTIGVLFTYILIIILITIFS 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +         ++V K+    Q       W+S      + +      +       I   
Sbjct: 91  MTVIPKVFNSGMDMVDKMPEFAQRM---YLWVSGHISSKFMNSGSGSFVRDNAGKWIEKF 147

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + + +  +              ++    +I  I  L+   +   +    +  L  +    
Sbjct: 148 SSMSSAWLAVALNQIVSTTASLINLIFGLIISIYMLYDKEKFKQNSKNLVYILLGNRSGN 207

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               ++R V +++ +      I +   G++      L   P  + + +I  I  MIP   
Sbjct: 208 KLINVARNVDEMVGTYIGIKAIDSFIIGIICLIGLMLFKCPYVLIISIIVMITNMIPYFG 267

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P         + +  +   A  + ++  +        L P LV   + +       G+  
Sbjct: 268 PFMGMIPPFLINVFYDPKKAFGILIFLVLLQQFDAWILEPKLVSDRVGVSPFLVILGITV 327

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G++G+ +   +MA++ +          E   K   +
Sbjct: 328 FGSLFGIIGMLLASPIMAVLNIYVGGWFRRKVEEYNKTQKS 368


>gi|255279990|ref|ZP_05344545.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
 gi|255269763|gb|EET62968.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
          Length = 368

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/366 (13%), Positives = 110/366 (30%), Gaps = 12/366 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++  L        +   ++ ++  +L     P + A  I F    +      K      +
Sbjct: 3   KKKALLWNAAYYGLFAVLVCLAWRYLYPALMPFILAFAIAF----LIRKLAGKLPCKGKW 58

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +       +F   +       +  +   ++ +    +  I           G    +
Sbjct: 59  TATLLLALFYVIFFGTIFLGGSKMIGTVAGFITNLPELYRTQIVPFLDGVSGDIGSILGK 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                    Q         +  N       I    S F        + +I M++A F+  
Sbjct: 119 TDASLAGEIQKGIQQMIQSMGENLSSLSMNILTGLSEFVTGIPALVVKVIVMVVASFYMT 178

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   I                + +       +++      ++ +     L +  WL  +
Sbjct: 179 ADYDRIMAAAGKYLPEKVKRTVRTVKEHGGNTLKAYLKSYFLLFLITFAELAAGLWLLRI 238

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    + +  A+  ++P             +L+    +      L   I + IV  TL P
Sbjct: 239 PYAPLIALAIAVFDILPVLGTGGILLPWTAVLLVMGNYPMAAGILVLYIVIVIVRNTLEP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV-----IWKESIMAIKENK 353
            +VG  + L  L T   +  G++  GL G+ + P+ + ++       + +E      + +
Sbjct: 299 KIVGKQVGLHPLVTLVAMFTGLQLGGLPGIILAPMGVVILVNMGKSGVIREFWRKTGQTE 358

Query: 354 EKISSN 359
           E  +  
Sbjct: 359 ENGTQE 364


>gi|282865805|ref|ZP_06274855.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282559449|gb|EFB65001.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 372

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 115/352 (32%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++  + L  L  +     P++  L +   +WP+      K+       A + TV
Sbjct: 23  ELLLVLVMAGVTLWILGRMWPVVWPLVVGLFLTTLTWPLARFL-RKRGWPPALAASVVTV 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  +      +  +L   V+   Q                WA+        
Sbjct: 82  LFLLVVGGIVALIAVPVASQSGQLTDGVIAGIQKLRE------------WAAGPPLNIDD 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S  + +      N +              ++  ++ +  +  +FFF +DG      L
Sbjct: 130 AQISHALDAGIDRIQNSLGSTVTTVVTGLSTVVNGVVTAVLSVFLMFFFLKDGPRFLPWL 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++      + S       + + + + +G   W+ GVP  + L V+T
Sbjct: 190 TRQLPGRLATDIPTVAERGWDTLGSFVRSQAFVGMLDAVFIGLGLWILGVPLVLPLAVLT 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + +A  + +   +   +     +P +    + L
Sbjct: 250 FVSAFVPIIGALFAGFVAVLIALVSNGLTDAIIVLVIIIVVQQLEGNVFQPMIQSRGLGL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   +  G    G++G  +      LIAV+W      + +  ++  ++
Sbjct: 310 HAAVVLLAVTLGGSLAGIVGSLLAVPAAGLIAVVWSYVREQLSDQPQEPETD 361


>gi|222053923|ref|YP_002536285.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221563212|gb|ACM19184.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 348

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 116/341 (34%), Gaps = 11/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  ++ + +   +I   I+ + Y L+   +  L + II +   P   +   ++    T+ 
Sbjct: 4   QRSVSSRAVTAILITAAIVAAGYALRHTVSCFLLSFIIAYLLDPAVVALERRR-IPRTYG 62

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  +++  + +  ++++  +  L  + L+  +    Q G  +           + +E 
Sbjct: 63  IIILYLTLALISVFCIIYILPFTTLAWESLLRDLPGYVQKGKDLILGGKGELQPAFGNEE 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W   +    +        L                        ++I   I +FF      
Sbjct: 123 WLWLMDTIWTNMDKLYEKLSAGVYAAAANVVFN--------LFNLILSPILVFFMLYYKH 174

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I  +  S          + I R +   +     G  I+++   ++   A +L G+   +
Sbjct: 175 QIIDECVSWLPAERSETIRAIGREINASVGGYIRGQLIVSVIVAVLSTIALFLLGIDYAI 234

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             G+   + +++P    I  T   ++       +      +    A+  F+    ++P +
Sbjct: 235 LNGIFAGLASILPFIGVILATLPPLFFAYVEFQSGVVLIKVAASFAVIYFLEGYVVKPLV 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + L  L T   ++     +G  G+ +   L A   ++
Sbjct: 295 FQESMDLNPLLTIIVVMAFGELLGFWGIILAIPLAAAFKIV 335


>gi|148556366|ref|YP_001263948.1| hypothetical protein Swit_3464 [Sphingomonas wittichii RW1]
 gi|148501556|gb|ABQ69810.1| protein of unknown function UPF0118 [Sphingomonas wittichii RW1]
          Length = 406

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/332 (16%), Positives = 112/332 (33%), Gaps = 14/332 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+  I  +L     FF PV  AL+I     P+      +    S   A++  +  + L  
Sbjct: 53  IILAIPFALRSGSEFFLPVTIALVIAVAMVPLLEWLERR-GLPSPLAALLCVLIFLGLAN 111

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +          L S++ L  ++  P+                + + +       +
Sbjct: 112 AAIASVIIPATEWFARLPSRIRLIRKNLSPLID----------IYSAFERFVDETMGSLL 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEH 194
            +    +T  +                  + ++F  + ++FF      + ++ + S G  
Sbjct: 162 RNTAHGRTVTVQSPNSLFDYVASSAPHALVQLVFATLVVYFFLSSWTRMRRRTITSRGSF 221

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++ + +     +    +T + IG G+++    W AG+PS +  G + AI+  I
Sbjct: 222 SSAMTTARVIQDMVDRTSAYLATITAVNIGMGILVSLMLWFAGMPSPIMWGGLVAILNYI 281

Query: 255 PGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P   PI    +     L+   ++  A    L       +    L P LVG  + +  L  
Sbjct: 282 PYFGPIVAAGLLAVGGLMTFSDLGYALVPALLFVAVHLVEANVLTPMLVGRRLTINPLLI 341

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L       G  G  +   L+ ++  I   
Sbjct: 342 LVALSFWSWVWGTAGALLAVPLLIILKTILDA 373


>gi|311693811|gb|ADP96684.1| protein belonging to uncharacterized protein family UPF0118 [marine
           bacterium HP15]
          Length = 398

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 106/335 (31%), Gaps = 9/335 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    IL +LY       P++ A++      P+      K        +++  + V+
Sbjct: 58  IYGLFGLGILYTLYVAHQIVLPIILAVMTSLLLSPLVKKAYVKWRVPRMISSLVFVLLVL 117

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +   L +    +  ++E+   +         + R ++ +       E   + LS  +
Sbjct: 118 AGIVGITLAVATPALKWVEEVPQGISRLLVGESEISRQIARVSESAEQVEKSVEELSESE 177

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +  +      +  + +   A        +    +   +   +F    G  + +     
Sbjct: 178 RQQPTTVVLQTDSWRNQLMTKAR-------NGIAGLALALALTYFLLVSGDRLIKNFVRQ 230

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I+      I      + +  +  G   G   W  G+P     G++  + 
Sbjct: 231 LPIDQRKTVLRITHDSQHQIAQYLGVLGLSNLAVGTTTGLICWAVGLPDPAVWGLVAGLA 290

Query: 252 AMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP    I   ++   +  +     +      L       +V   + P++ G  + +  
Sbjct: 291 RFIPYLGVILSISMLTIVSAISLDEFWMMAIAPLGFLGLTTLVGFFIEPWIHGFRMAINP 350

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +  F  +       G +G+ +   LM +I V+ K+
Sbjct: 351 VIIFVSIFFWGWLWGPVGVLLAVPLMTVIQVVLKQ 385


>gi|170690474|ref|ZP_02881641.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170144909|gb|EDT13070.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 651

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 101/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +   +++ +LYF +    P+  ++++ F   P+      +          IA + 
Sbjct: 24  GLASVITGVVVVCALYFGRAVLIPITLSVLLSFLLAPLVQML-RRLRMGQLPSIFIAVLF 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +     +    +    +L    V   Q    V          + +    T     
Sbjct: 83  ALAALLAIGALIGAQLVQLAGDLPQYQVAIEQKIETVQEKTIGRADSLMSRAAATLQRVA 142

Query: 130 PQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMIIALFF 176
           P        T         +              + A R     +    +   +++   F
Sbjct: 143 PSKPPPPRPTGRAARNAPAVPTPVEVHEPSPTPMQLAQRALSPAIAPIETTFIVLVVTIF 202

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G V+     + 
Sbjct: 203 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSRYFVAQLGVNLSAGGVIAIGLAII 262

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++++L   I+     A    +   +   +  +
Sbjct: 263 GVPGALLFGVIAALLRFVPYIGIWIAAILAVFLAAAIQPQWTMAVYTLILFIVVDVVAGQ 322

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 323 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCVVTLGR 371


>gi|326569354|gb|EGE19414.1| hypothetical protein E9U_06901 [Moraxella catarrhalis BC8]
          Length = 369

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K   AP ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVIAPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTDSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWDQRLYTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +      + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDTYLRSD 354


>gi|1620467|emb|CAA67775.1| membrane protein [Streptococcus pneumoniae]
          Length = 369

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 107/323 (33%), Gaps = 6/323 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L    + + + PI +      + +     +I   +++   ++ +
Sbjct: 30  LINPFVSVLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 90  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   I           ++  +   +    L P +VG  +K+  +     L+ 
Sbjct: 264 PSIGLIPMIIANIFTVPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLL 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
                G++G+ +     +++  I
Sbjct: 324 SSNIYGVVGMIVAVPTYSILKEI 346


>gi|288800743|ref|ZP_06406200.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332204|gb|EFC70685.1| membrane protein [Prevotella sp. oral taxon 299 str. F0039]
          Length = 366

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/367 (13%), Positives = 125/367 (34%), Gaps = 16/367 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEES- 58
           + +   + +    I+  + +S +    L G   P   A +  +  +PI     +K     
Sbjct: 4   QKITFDKLVRWVGIVAAVGLSCWIINSLSGVLLPFFIAWLFAYLLYPIVIFVQNKLHVKI 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                +IA + V+ +    +  +    + +  +L   +         V      I   + 
Sbjct: 64  RALSIIIALLLVLIVIGGVVYLIIPPMINQFTKLGPIISSYAAQKGTVNEVTRYIQEWIA 123

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                 +H    +      +  L                   +   ++    ++ +FF  
Sbjct: 124 EHHQMIEHYFRSKEFTDTLQKTLPQVFS------VLGQTASIVISIVASFITLLYMFFIL 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   +++    +    + ++W+ +++ V + + +   G  ++A+  G++    + +   
Sbjct: 178 LDYEYLTENWIKIFPKKYRSFWEALAQDVERELNNYIRGQGMVALCMGIMFCIGFTIIDF 237

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIV 292
           P  + LG++  I+ ++P     +    +   L       +   +      L   +   I 
Sbjct: 238 PMAIGLGILIGILDLVPYLHSFAVIPTAFLALLKAADTGQNFWWVFGLALLVFMVVQIIT 297

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  + P ++G  + L  +     L      +G +GL +   L  LI V W+  +    EN
Sbjct: 298 DMVVVPKVMGKTMGLNPVILLLSLSIWGTLLGFIGLIVALPLTTLIIVYWQRYVTKEVEN 357

Query: 353 KEKISSN 359
           +  +  +
Sbjct: 358 ENNLKKD 364


>gi|298530977|ref|ZP_07018378.1| protein of unknown function UPF0118 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509000|gb|EFI32905.1| protein of unknown function UPF0118 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 364

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 110/358 (30%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    N Q ++   ++      +YF      P  + L+I +    +              
Sbjct: 9   KRHFGNQQVVILVGLLLFFFGVVYFFGQMLLPFFAGLVIAYLLDGMVKMMTKY-GIPRLL 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  M +      +L    + ++ +LV ++             L +    + + E
Sbjct: 68  AVILVFLGFMLIMFFSFFWLVPMLIKQVTQLVQQLPSMISEAQMHLLQLPERYPHLVSQE 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +S  ++        + +  +  +           +   + +I + + +FFF +D 
Sbjct: 128 QIQEVISALRTEVAQLGQQILSISVASVVGL--------ITILVYLIIVPLLVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +             +   ++   V + I +   G T   I       + +   G+   
Sbjct: 180 EMLLAWFTRFLPRE-RSLAVQVWEDVNRQISNYIRGKTWEIIIVWGATFAVFSFFGLQYS 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L +   +  +IP       T     +     G       + +  AI   +    L P 
Sbjct: 239 VLLSLAVGLSVLIPYIGAAVVTVPIALVAYFQWGFGSEFVWILVAYAIIQALDGNVLAPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+G  + +  +     +       G  G+F    L  L+  + +    A    K+ I 
Sbjct: 299 LLGEVVNIHPVGIVAAIFVFGGLWGFWGVFFAIPLATLVQAVIRAWPRAEDVKKQAIE 356


>gi|256059328|ref|ZP_05449530.1| hypothetical protein Bneo5_03088 [Brucella neotomae 5K33]
          Length = 352

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 144/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 1   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 61  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 120 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 179

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 180 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 238

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LR  LVG 
Sbjct: 239 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRLPLVGK 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 299 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 347


>gi|123442436|ref|YP_001006415.1| putative inner membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089397|emb|CAL12245.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 367

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 141/359 (39%), Gaps = 6/359 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   L         IM +I+ S + ++ F      A ++   +WP+             
Sbjct: 6   LRRFDLPKLMFGVIFIMIMIIASFWVVQPFIMGFAWAGMVVIATWPLLIWLQKILWGKRW 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             A+I T+ ++ LF++P+  L    +     L+      +   +P   WL  IP  G   
Sbjct: 66  LAAIIMTILLILLFVIPIALLVSSLVENSGPLIQWASSPSNLKMPDVTWLKSIPMVGNKL 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   +L I            ++   A+  G     + + +  M++     Y 
Sbjct: 126 YSGWHSLIAGGGNLLIAKIQPYVGAAATWLVAQAAHIGY----FLIHLALMVLFSILLYF 181

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +   +              +  +  K IR+  LG+ + A+ + ++ G    +AG+ 
Sbjct: 182 HGEQVGLGIRHFAVRAADKRGDAVVVLAAKAIRAVALGVVVTALVQAVLGGIGLAIAGIQ 241

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  I  +   G  +      I+L   G+    T L +W  I    +D  LRP+
Sbjct: 242 YATLFTVLMFICCVAQLGPLLILIPAVIWLYWTGDSTWGTILLVWSCIV-GTMDNVLRPY 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     +P +    G++GG+ + G++GLFIGPV++A+   +    +    E +E I+ 
Sbjct: 301 LIRMEADMPMILILSGVIGGLLSFGMIGLFIGPVVLAISYRLTSAWVNEAPEPEESITE 359


>gi|260912796|ref|ZP_05919282.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
 gi|260633174|gb|EEX51339.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
          Length = 355

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 108/349 (30%), Gaps = 11/349 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +PQ +  + I+    +S+YF     AP+L A+++ +           K +       
Sbjct: 12  RFSDPQAMGLFAILLFGFISIYFFSHLIAPLLIAIVLAYLLEWPIRFLTDKLKFPRLLST 71

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +     + L +V +L L      +   LVS +             L +    +   +  
Sbjct: 72  ALIFGGFLSLILVIVLVLIPTLWTQTVNLVSDLPHMFNTINVWLLSLPEHYPELVDYQTI 131

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L+  ++  +           +   +F+    +  +   +    + + +FF  +D   
Sbjct: 132 DSVLNSVKAKIL--------GFGESALKFSLTSLLSLVTLGIYAFLVPLMVFFLLKDKKE 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +              + + + + I +   G     I    V  + +   G+   + 
Sbjct: 184 LMTGVSRFLP-KNRTLASNVWQEMQQQIANYIRGKLFEIIIVTAVTYAIFLFFGLNYSLL 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L V   +  ++P    +  T     +     G       + +   +   +    L PFL 
Sbjct: 243 LAVAVGLSVLVPYIGAVLVTIPVALVAAAQFGISPTFWYILIAYIVSQLLDGNLLVPFLF 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              + L  L     ++      G  G+F    L  L+  +      + +
Sbjct: 303 SEAVNLHPLVIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPSSEQ 351


>gi|318059209|ref|ZP_07977932.1| integral membrane protein [Streptomyces sp. SA3_actG]
 gi|318079386|ref|ZP_07986718.1| integral membrane protein [Streptomyces sp. SA3_actF]
          Length = 367

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 109/345 (31%), Gaps = 21/345 (6%)

Query: 11  IMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++  ++  +  V ++    LK    P+L A++      P+YS  + +     +  A I  
Sbjct: 27  VLLLLVTGVAAVGIWLCVELKTAVTPILLAVLGTALLRPLYSLLVHRVHVQRSLAAGITC 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V+         +    +   ++++  +    +                     W    
Sbjct: 87  AAVVAAVGGAGYIVTSAIVDNGQQILDSIRSGIEDAAS-----------------WVGAE 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +   L                 +   +  + +  ++ +FFF RD     + 
Sbjct: 130 DTSLDDITHNARQLLNKFGGTAATGVINGLSVVGSFVATAVLALLLMFFFLRDAGRALRG 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L         + ++R   + +     G TIIA+ +   +     + GVP  + LG +
Sbjct: 190 LRELSPGDSSDLVEAMARRAYQAVAGFMHGTTIIALIDATFITIGLLVLGVPGALGLGAL 249

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP     +S     +  L       A  +         +    L+P +    ++
Sbjct: 250 VFLGAYIPYLGAFLSGAVAILVALADRGFVIALWVLGVVLAVQVLEGHLLQPVVQSRTVQ 309

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +        +  G    G+LG+ +   L A    I++E      +
Sbjct: 310 MHPAVVMVTITAGASLAGILGMLLAVPLTAAAFGIFRELRERYGD 354


>gi|85858614|ref|YP_460816.1| hypothetical protein SYN_02943 [Syntrophus aciditrophicus SB]
 gi|85721705|gb|ABC76648.1| hypothetical membrane protein [Syntrophus aciditrophicus SB]
          Length = 363

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 141/356 (39%), Gaps = 6/356 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             L    +    I  +I  SL+ L+ F   ++ +++I   +WP      +          
Sbjct: 9   PDLTRIILQILWIGILIASSLWILRPFLPSLIWSVMIVVATWPFMLKMETCLWRKRGLAV 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASEL 122
               ++++ LF+VP        +     + + V     Q    +P WLS +P        
Sbjct: 69  AAMMIAMLTLFVVPFSLAIVAIIDNADRIAAWVTSFQGQALPALPDWLSGVPVVGSKLNT 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + +                  + +    A   G+I L++ L++I   I     Y +G 
Sbjct: 129 AWEGVRTGPEGIAARLVPYAGKLLSWFLSQAGSVGIIALEFLLTVIIAAI----LYVNGE 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           + S+ +      L     + ++ +  K +R   LG+   A+ + L+ G    +AGVP+  
Sbjct: 185 TASKGVFQFARRLGGHRGEDVAMLAAKTVRGVALGVVGTALVQSLLGGIGLSVAGVPAAT 244

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  +  ++ +   G  +      I+L   G     T L +W      I D  LRP L+ 
Sbjct: 245 VLTGVMFMLCIAQLGPGLVLFPAVIWLYWSGQTTWGTMLLVWTIFACTI-DNLLRPILIK 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               LP L  F G++GG+ + G++GLFIGPV++++   +    +   + +  +  +
Sbjct: 304 KGADLPMLLIFAGVIGGLASFGIVGLFIGPVVLSVTLRLLGVWVADTEVSPSREDA 359


>gi|30264460|ref|NP_846837.1| hypothetical protein BA_4618 [Bacillus anthracis str. Ames]
 gi|47529918|ref|YP_021267.1| hypothetical protein GBAA_4618 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49187282|ref|YP_030534.1| hypothetical protein BAS4286 [Bacillus anthracis str. Sterne]
 gi|49478624|ref|YP_038441.1| hypothetical protein BT9727_4123 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52141116|ref|YP_085713.1| hypothetical protein BCZK4134 [Bacillus cereus E33L]
 gi|165872760|ref|ZP_02217388.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167636499|ref|ZP_02394796.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167638692|ref|ZP_02396968.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170689642|ref|ZP_02880824.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170709393|ref|ZP_02899804.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177653234|ref|ZP_02935486.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190566844|ref|ZP_03019760.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196034451|ref|ZP_03101860.1| putative membrane protein [Bacillus cereus W]
 gi|218905585|ref|YP_002453419.1| hypothetical protein BCAH820_4470 [Bacillus cereus AH820]
 gi|225866372|ref|YP_002751750.1| hypothetical protein BCA_4502 [Bacillus cereus 03BB102]
 gi|227817169|ref|YP_002817178.1| hypothetical protein BAMEG_4655 [Bacillus anthracis str. CDC 684]
 gi|229601469|ref|YP_002868677.1| hypothetical protein BAA_4638 [Bacillus anthracis str. A0248]
 gi|254684146|ref|ZP_05148006.1| hypothetical protein BantC_09855 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724683|ref|ZP_05186466.1| hypothetical protein BantA1_19790 [Bacillus anthracis str. A1055]
 gi|254736493|ref|ZP_05194199.1| hypothetical protein BantWNA_15131 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741531|ref|ZP_05199218.1| hypothetical protein BantKB_11057 [Bacillus anthracis str. Kruger
           B]
 gi|254751370|ref|ZP_05203407.1| hypothetical protein BantV_02826 [Bacillus anthracis str. Vollum]
 gi|254757702|ref|ZP_05209729.1| hypothetical protein BantA9_05266 [Bacillus anthracis str.
           Australia 94]
 gi|301055899|ref|YP_003794110.1| membrane protein [Bacillus anthracis CI]
 gi|30259118|gb|AAP28323.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|47505066|gb|AAT33742.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181209|gb|AAT56585.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49330180|gb|AAT60826.1| probable membrane protein [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|51974585|gb|AAU16135.1| probable membrane protein [Bacillus cereus E33L]
 gi|164711536|gb|EDR17085.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167513540|gb|EDR88910.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167528092|gb|EDR90889.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170125692|gb|EDS94608.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170666412|gb|EDT17193.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172081516|gb|EDT66588.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190561835|gb|EDV15804.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195992993|gb|EDX56952.1| putative membrane protein [Bacillus cereus W]
 gi|218540217|gb|ACK92615.1| putative membrane protein [Bacillus cereus AH820]
 gi|225785955|gb|ACO26172.1| putative membrane protein [Bacillus cereus 03BB102]
 gi|227003791|gb|ACP13534.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|229265877|gb|ACQ47514.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|300378068|gb|ADK06972.1| conserved hypothetical membrane protein [Bacillus cereus biovar
           anthracis str. CI]
          Length = 355

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPIVIKQLQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 102 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 332 SVPVLAVIRTVI 343


>gi|161502354|ref|YP_001569466.1| hypothetical protein SARI_00387 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863701|gb|ABX20324.1| hypothetical protein SARI_00387 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 355

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 106/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLVFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 348


>gi|190410040|ref|YP_001965564.1| hypothetical protein [Sinorhizobium meliloti]
 gi|125631070|gb|ABN47071.1| hypothetical protein [Sinorhizobium meliloti SM11]
          Length = 347

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 135/311 (43%), Gaps = 3/311 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
                 L+ F + +L A +I F++WP+Y         + +  A + T+ V  + + P   
Sbjct: 22  FGCALVLQPFLSAILWAAVICFSTWPVYQRCERAVGGNKSLAAAVMTLLVALVLVAPFAV 81

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +       +  L++ V    + G P P        G+              +    + + 
Sbjct: 82  MVPTLTDNVSNLLTAVNQILEQGPPAP---PRWVAGLPVIGENLAAYWESLAHNAPAFST 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                I      A   G +     L +   +   FFF+  G  ++  + ++GE       
Sbjct: 139 ELKKLIGPATNLAVASGAVLGAGLLELGLSVFIAFFFFLHGRRMAAYVRAVGERFAGPRS 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +K+  +V   ++    G+   A+ + ++ G  +W+AGVP  + LG +T +++ +P G P+
Sbjct: 199 RKLLTVVGATVKGVIYGLIGTALAQAVLAGIGFWIAGVPQALLLGFLTFVLSFVPIGPPL 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            + +V+++  ++G ++    +  WG I +  +D  +RP+++G    LP L   FG +GGV
Sbjct: 259 VWGSVALWFFVQGAVWWGLFVAAWGLILVSSIDNVIRPYVLGKTNNLPVLLGLFGFLGGV 318

Query: 321 RTMGLLGLFIG 331
              G +G+F G
Sbjct: 319 VAFGFIGIFWG 329


>gi|315653902|ref|ZP_07906818.1| permease [Lactobacillus iners ATCC 55195]
 gi|315488598|gb|EFU78244.1| permease [Lactobacillus iners ATCC 55195]
          Length = 380

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 121/337 (35%), Gaps = 4/337 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPMLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIVNTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +        ++ +    +   M+ +            LFF  +DG  I+  L S     
Sbjct: 163 NTGKASFNLFLENLFGAVNVISMLIVTLLT----APFILFFMLKDGKKINPYLTSFMPPR 218

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
               + K+   +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP
Sbjct: 219 LQNVFSKLLHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIP 278

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +     +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   
Sbjct: 279 YFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILL 338

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+G     GLLG+     + A I +I  +     ++N
Sbjct: 339 LIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 375


>gi|196044927|ref|ZP_03112161.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196024415|gb|EDX63088.1| putative membrane protein [Bacillus cereus 03BB108]
          Length = 355

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 110/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 35  IIFVFKVAITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 94  PIVIKQLQEINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGV 143

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          L    + +  + 
Sbjct: 144 ETKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQM 203

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 204 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILG 263

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 264 AIPALMIAATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEV 323

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 324 AGIVGLLISVPVLAVIRTVI 343


>gi|254390206|ref|ZP_05005425.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|197703912|gb|EDY49724.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 469

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 97/312 (31%), Gaps = 18/312 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   L  L  +            SAL+I     P  +  + +          +  
Sbjct: 129 WRLLVLAGTLWVLMRVISAVQLVVLAFASALLITALLQPTVARLL-RIGLPRGLATAVTA 187

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++   +  +   F+ +  M  +  L  +V    Q               +WA E      
Sbjct: 188 IAGFAVMALVGWFVVWQVMENLDTLSDRVREGIQELR------------LWALEGPFHVS 235

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    + +    +  + I     +     +++    +  + +  F   DG  I Q 
Sbjct: 236 EGQINDLADNLSDTIGSNTEEITSAGLQGVTALMEFLAGALLAMFSTLFLLHDGPRIWQW 295

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                   + +   G  ++A+ + + +G   W   VP  V L V 
Sbjct: 296 TLKLVPAQARPGVASAGPRAWATLTAYVRGTVLVALIDAIFIGLGIWFLDVPMAVPLAVF 355

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A +P     +S     +  L+   +F A  + +       I    L+PF++G  ++
Sbjct: 356 VFLFAFVPLVGAVLSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHVLQPFILGRAVR 415

Query: 307 LPFLPTFFGLVG 318
           +  L     +  
Sbjct: 416 VHPLAVVLSVAV 427


>gi|327314452|ref|YP_004329889.1| hypothetical protein HMPREF9137_2236 [Prevotella denticola F0289]
 gi|326944170|gb|AEA20055.1| putative membrane protein [Prevotella denticola F0289]
          Length = 359

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 119/363 (32%), Gaps = 16/363 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M++T+   + I   +I   ++ + +    L G   P   A ++ +  +PI      K   
Sbjct: 1   MKQTITFDKFIRWALIALAVITAGFIINALSGALLPFFIAWLLAYLLYPIVKFVQYKLHV 60

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I    V  +     LF+    + +   L+                 + +   
Sbjct: 61  PGRVLSIIITLAFVAAVITAIFLFIVPPMIDQFDRLMHVANRYLHETTHANNISAMVQRW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +                   +   ++    ++ +FF
Sbjct: 121 VMENQFEIEKFLKSPDFTNAIKTAMPKLFS------VIGQTASIVISVIASCITLLYMFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D  ++++    +       +W  +++ V + + +   G  ++++  G +    + + 
Sbjct: 175 ILLDYETLTENWIKIFPKRVRPFWAGLAQDVERELNNYIRGQGLVSLCLGALFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELF 290
             P  + +GV+  I+ ++P     +    +   L       +             A+   
Sbjct: 235 DFPMAIGMGVLIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFGSALAVFAVVQI 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL +   L  LI   W+  +   K
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGSLLGFIGLIVALPLTTLIIAYWQRYVTKEK 354

Query: 351 ENK 353
           E +
Sbjct: 355 EEQ 357


>gi|152971346|ref|YP_001336455.1| putative permease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238895941|ref|YP_002920677.1| putative permease [Klebsiella pneumoniae NTUH-K2044]
 gi|262042100|ref|ZP_06015276.1| PerM family permease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330007358|ref|ZP_08305946.1| hypothetical protein HMPREF9538_03635 [Klebsiella sp. MS 92-3]
 gi|150956195|gb|ABR78225.1| putative permease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238548259|dbj|BAH64610.1| putative permease [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259040581|gb|EEW41676.1| PerM family permease [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328535475|gb|EGF61941.1| hypothetical protein HMPREF9538_03635 [Klebsiella sp. MS 92-3]
          Length = 353

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 108/350 (30%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +           +   S T+
Sbjct: 10  RRRFSDPEAIALLVILLAGFGIMFFFSGLLAPLLVAIVLAYLLEWPTVRLE-RIGLSRTW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSLVLILFVGILLLLAFVVLPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLTVGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I   +     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVSVATWIGFILFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G       LF    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSLFAVYLIIQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     +V      G  G+F    L  LI  +       +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDGL 349


>gi|300119211|ref|ZP_07056908.1| hypothetical protein BCSJ1_23269 [Bacillus cereus SJ1]
 gi|298723431|gb|EFI64176.1| hypothetical protein BCSJ1_23269 [Bacillus cereus SJ1]
          Length = 355

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPIVIKQLQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 102 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFIGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 332 SVPVLAVIRTVI 343


>gi|116621992|ref|YP_824148.1| hypothetical protein Acid_2877 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225154|gb|ABJ83863.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 605

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/361 (12%), Positives = 106/361 (29%), Gaps = 32/361 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + + + +LYF +    P+  A+++ F   P        +        + + + V  +
Sbjct: 15  VVAVLLAIAALYFAREILVPLAVAVLLSFLLTPSVRFLERLRIGR-----LPSVLLVFLV 69

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW------ASELWTKHL 127
            +     + Y    ++ ++++++    ++       L   PGG          EL  +  
Sbjct: 70  SLACAGGVGYVVGNQLFDVLNELPKYKENLRTKMESLGGRPGGSLAKATASVQELSKELA 129

Query: 128 SHPQSLKILSETFLKTNGID-------------------FIPRFASRFGMIFLDYCLSII 168
           +  Q +        KT                          +         L     I+
Sbjct: 130 APKQDVPETPRRLSKTQKSAAPPAEVGKPVPVELVEPPPNALQSVRNIAGPLLAPIGKIV 189

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            ++I           +  ++  L          +      + +        ++    G  
Sbjct: 190 VIVIFTIVILIKREDLRNRVLRLLGRGRLPRATQAFDDAAERVTQYLRMQFLVNSVFGAT 249

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGA 286
           +G    + G+PS +  G +  ++  +P   PI   A+     L +               
Sbjct: 250 IGVGLSVIGLPSALLWGALAGLLRFMPYLGPILGGALPSVMALAVFPGWRYPLMCLGLFL 309

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           I   +V   + P+L G    +  L             G +GL +   L   + V+ + + 
Sbjct: 310 ITELVVAYAVEPWLYGTHTGVSSLAILVSAAFWTTVWGPVGLVLSTPLTVCLLVLGRHAP 369

Query: 347 M 347
            
Sbjct: 370 Q 370


>gi|291449878|ref|ZP_06589268.1| integral membrane protein [Streptomyces albus J1074]
 gi|291352827|gb|EFE79729.1| integral membrane protein [Streptomyces albus J1074]
          Length = 369

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 109/349 (31%), Gaps = 14/349 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++  + +   L  +  +     P++  L++   +WP+     +         A + TV
Sbjct: 23  QLLLVAVAVTAALWLVGQMWSVVWPLVVGLLLTTLTWPLARFLRNHSW-PPALAASVVTV 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  +      E   L   V+   +                WA+        
Sbjct: 82  FALVVAAGIVALIAVPVASESGTLADGVIAGVEQLRT------------WAAGPPLNIGD 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  + +      + +       +      +   +  +  +  +FFF +DG      L
Sbjct: 130 AEITKAMDAGIERLQSSLGATVSTVATGLSTVVHGVVVAVIAVFLMFFFLKDGPRFLPWL 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++      + +      ++ + + + +G   W+ GVP  + L V+T
Sbjct: 190 TRQLPGRLAVDIPTVAERCWNTLGAFIRSQALVGLIDAVFIGLGLWILGVPLVLPLSVLT 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P            +  L+   + +A  +     +   +     +P +    + L
Sbjct: 250 FVGAFVPIVGAFFAGFVAVLIALVSNGLTDALIVLAIIIVVQQLEGNVFQPMIQSRGLGL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                   +  G    G++G  +     ALI VIW+     + E   + 
Sbjct: 310 HAAVVLLAVTLGGSLAGIVGSLLAVPAAALIGVIWRYIREQLAEPPHEP 358


>gi|317129668|ref|YP_004095950.1| hypothetical protein Bcell_2969 [Bacillus cellulosilyticus DSM
           2522]
 gi|315474616|gb|ADU31219.1| protein of unknown function UPF0118 [Bacillus cellulosilyticus DSM
           2522]
          Length = 373

 Score =  123 bits (310), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 124/343 (36%), Gaps = 5/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI    + F++  F P L A ++ +   PI     ++ +       +I  V ++ +  
Sbjct: 26  VSFIFRPLVVFVQTVFIPFLIAGVLFYLLRPILIFLHNR-KVPKVIAILIIYVLLIGVLT 84

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +      ++  L+  +         V   LS+I         +    S       
Sbjct: 85  GLVFLIGPALQAQLMNLIDNMPFLVNEVRKVIFDLSEIEW----LAQFQDFESFSIESIS 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   +  +  +FI    + F     +   +II +   LF+  +DG     Q+       
Sbjct: 141 ENIAGVLMDTFNFISMNIASFLGALTNTLFTIILIPFMLFYILKDGHKAPNQVLRFFPEK 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K+I   + K + S   G  I+++  G+++  +Y + G+   + L +I     +IP
Sbjct: 201 QQIEGKRILSDMDKALSSFIQGQIIVSLCVGILMFISYTIIGLEYTLILALIAMATNLIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++ + +  +   A  + +   +   I    + P ++G  + +  L     
Sbjct: 261 FIGPWIGAVPAVIVALIASPMTALWVIVAIVVVQQIESNLIAPQVMGRKLAIHPLTIIIL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++   R  G +G  I     A+  V+   +   +K  K+ +  
Sbjct: 321 ILVAGRFAGFIGFLIAVPTYAVTKVVVSHTYRLLKLRKQNLEE 363


>gi|320104445|ref|YP_004180036.1| hypothetical protein Isop_2922 [Isosphaera pallida ATCC 43644]
 gi|319751727|gb|ADV63487.1| protein of unknown function UPF0118 [Isosphaera pallida ATCC 43644]
          Length = 429

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 112/340 (32%), Gaps = 16/340 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  + +   L ++++LK    P+  ALI+     PI + F ++        AV   
Sbjct: 28  TSVALIVLAVLASLYAIHWLKPILVPIALALILACLFSPITTYFRTRWSLGPITSAVTLF 87

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    L +   +         +  L  +                     +         +
Sbjct: 88  VLSTVLGVFVFIITANSLFQAITSLPMQFEFIIGKISSRLTETYRDYPALRGVLPDPDAV 147

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   L    LK++  +   R      ++ L              F   +   ++ +
Sbjct: 148 DLLGRTNALLVEGLKSSYQELTVRVGEGVVVMTLVL------------FLLAETEILAPR 195

Query: 188 LDSLGEHLFPAYWKK--ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +      L     +   + R +   +R+  +  T++ +  G+ +   YW  G+P  + +G
Sbjct: 196 VIRFFRPLQRDAQEAEALLRGLVHQVRAFLVARTMLNLMLGMAMAGVYWAFGLPFALLMG 255

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +  AI+  IP   PI      + +L    G + +A  L       + +    L P+L+G 
Sbjct: 256 LALAILNYIPYLGPILGGFPPVLMLFASEGTLSDALLLLAVYIGIITMEGYVLTPWLMGR 315

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + L         +      G +GL +   + A I ++++
Sbjct: 316 SLDLNGTTVLIACLVWWFLWGDIGLILAMPITAAINLVFQ 355


>gi|261343992|ref|ZP_05971637.1| putative membrane protein [Providencia rustigianii DSM 4541]
 gi|282568383|gb|EFB73918.1| putative membrane protein [Providencia rustigianii DSM 4541]
          Length = 371

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 139/359 (38%), Gaps = 7/359 (1%)

Query: 2   RETMLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++ M  P+ ++  + I+F+I    + L  F    + A ++   +WPI      +      
Sbjct: 5   QKRMDLPKLVLGLLSIIFMIATCFWVLSPFILGFVWAGMMVIATWPIMLKLQVRLWNKRW 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             +V+  + +  LF++P   L    +     L+          +P   WL+ IP  G   
Sbjct: 65  LSSVVMVLLIFLLFVIPSSILIGSIIQNSAPLIELAKSPANITLPDLEWLNQIPMVGEKL 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   +  +            +    A           L ++F  +  +    
Sbjct: 125 YYAWHSLVASGGNALLAKVQPYIGQAAGWFATQAISASRFLFHLMLMLLFSGLLYY---- 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + IR+  LG+ + A+ + +V G    L+G+ 
Sbjct: 181 KGELVTLGIRHFAVRLAGIRGDAAVVLAAQSIRAVALGVVVTALVQAIVGGIGLALSGIS 240

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  I  +   G  +      ++L   G+   A  L +W AI   +    LRP+
Sbjct: 241 YAAILTVLIFICCVAQIGPLLVMIPSVLWLFWTGDTTWAIILGVWAAIVATMDG-VLRPW 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     LP +    G++GG+ + G++GLFIGPV++A+   + K  +  +    E +  
Sbjct: 300 LIKMGADLPMVLILIGVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAPPSESLDE 358


>gi|296133409|ref|YP_003640656.1| protein of unknown function UPF0118 [Thermincola sp. JR]
 gi|296031987|gb|ADG82755.1| protein of unknown function UPF0118 [Thermincola potens JR]
          Length = 359

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 116/350 (33%), Gaps = 13/350 (3%)

Query: 6   LNPQGIMRWMIMF----IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           L  + I R + +     +    LY ++    P   A++I +   P  +   S++      
Sbjct: 19  LTRKKIYRLIFLITVPVLTGYLLYRVRRIMIPFALAVLIAYLLNPFVNMLESRR-LPRGI 77

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++    V       +       M E+      V    +    +              +
Sbjct: 78  AILLVYALVFVFITGLVTVGVPAIMDELTSFARAVPHFTREVQSIVHEAEARYSRFVLPD 137

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              K       L       L     + +             +  S+I   +  F+  +D 
Sbjct: 138 PVKKVFDQKIKLVEAQLISLTGELAEGVVGI--------FSHLFSLIIAPVFAFYLLKDS 189

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +I +   +L    +    + ++  + ++      G  ++ +  GL+ G  Y L G+   
Sbjct: 190 GNIKKNFLALLPAGWRNDVQALTVDINEIFSKYIRGHLLVCVIVGLLTGVGYALVGLEYA 249

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LG+   I  ++P   P      ++ L +  +   A  + +   +   I +  + P ++
Sbjct: 250 FILGIFAGIADLVPYFGPFIGALPALMLALLESRVMALKVLIVVLVIQQIENSVISPKII 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G  + L  L     L+ G    GLLGL +   + A++  + +   + + +
Sbjct: 310 GDSLGLSPLVVIIVLMAGGELYGLLGLLLAVPVTAVLKCLIRYMYLKLVD 359


>gi|296112802|ref|YP_003626740.1| hypothetical protein MCR_0576 [Moraxella catarrhalis RH4]
 gi|295920496|gb|ADG60847.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
          Length = 369

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 114/348 (32%), Gaps = 7/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L +L+ +K    P ++A I+ +   P+ S               +  +
Sbjct: 11  RRLFILAALCLFLYALFLMKTVITPFVAAFILAYFLNPLVSRLA--LIMPRILAVSVVYI 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    +++L      +M+ L   +           R             L    +S
Sbjct: 69  SCFVVMGALIIWLVPMVWAQMQILWESLPHIITWYNDTGRAWIARYTNSELLPLDIDLIS 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +     +   + N +  + +     G+   +    I+ + I  F+F           
Sbjct: 129 --NTALDYFQNNYQVNDVQGLIKQVFSSGISAANNIGLIVMVPILTFYFLLGWNQRLYTW 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +     +I+R     + +   G  ++ +  G +      L G+   + +G+  
Sbjct: 187 KLSIPKPYTNKVVRIARDCDTALMNFAKGQFLVMLLLGAIYAIQLQLIGLQLGLIIGITA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I + +P          ++   +     +      +F    I   +    L+P L+G  I
Sbjct: 247 GIASFVPYLGFGIGIIAALIAGLFQFGLDWIYLGLIFGAFMIGQVVEGYILQPLLLGDKI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  L   F ++ G    G +G+ I   + A+I V++  +  A   + 
Sbjct: 307 GLSPLWVIFSVLAGASLFGFVGMLIALPVSAVINVLFHYAYDAYLRSD 354


>gi|319790230|ref|YP_004151863.1| protein of unknown function UPF0118 [Thermovibrio ammonificans
           HB-1]
 gi|317114732|gb|ADU97222.1| protein of unknown function UPF0118 [Thermovibrio ammonificans
           HB-1]
          Length = 353

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 111/341 (32%), Gaps = 5/341 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I  +  + +++  L+ LK    P   A  + +   P++  F    + +    A     ++
Sbjct: 8   IYLFTTIVVLIALLFLLKPAVMPFFIASTVAYLFHPLFGFFKKSFKGNVKLAAASTLAAI 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  + L  +      +++  ++ +    Q    V         G    + +  +    
Sbjct: 68  GLVIFITLFIILPTIFEQVQSFITYLPTLMQKLDAVI----YKTFGEHLLKRFHFNAEGF 123

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +     + L    I  +           L   +++  +    ++F   G  + +    
Sbjct: 124 HEIIKELYSKLGNLPIGNLLSKLFSGVFSILSILINLFVIPFLTYYFLTTGDKVLELYIK 183

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                  A  K +   V   + S  LG   +A+  G+ L    WL  +   + +G I  +
Sbjct: 184 TAPKRIQAELKALIDKVHSSLSSYLLGQVAVAVFVGVYLSVGLWLVKIKYALLIGFIAGV 243

Query: 251 MAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + MIP     S    S+ L       ++A    L   +    ++  + P ++     +  
Sbjct: 244 LNMIPYVGFFSGLIPSLLLAAFDNGTWSAVIGVLIVFLTEVGLENLIYPLVMSRTTGINP 303

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +        G    G LG+ I   +  +   I++  +   +
Sbjct: 304 ILILLATFVGGYAGGFLGIVIAVPVAVMAVPIFESFLEKKE 344


>gi|108805764|ref|YP_645701.1| hypothetical protein Rxyl_2979 [Rubrobacter xylanophilus DSM 9941]
 gi|108767007|gb|ABG05889.1| protein of unknown function UPF0118 [Rubrobacter xylanophilus DSM
           9941]
          Length = 387

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 97/322 (30%), Gaps = 5/322 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q  +    + + +V +  + G     L A ++ +   P+     +          +    
Sbjct: 21  QYFLIAAGLVLAVVLIRQIGGVLLTFLMAGVLAYALNPLVRRLEA-MRVPRALAVLGVFA 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++      LL +    + +++ L+    +  +    +  W   +P          +   
Sbjct: 80  ALLAAVFAVLLVIIIPAVNQVQALLRNPQVVAEAAANLLAWAEGLPYVGERISAVDREAV 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L                        L+      FM+I   +   D   I +  
Sbjct: 140 LAFVQSNLPPAGTMLKAALGFIGGVFGVFGTILNLV----FMLIVAIYMLLDRERIRRGA 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL          ++   V   +        ++ +  G++  +  +  G    + +GV  
Sbjct: 196 LSLIPPTVRGNVLELFSAVEGALVRYLKAQLLLCVLMGVIGWAIVFFTGGEYALLIGVWV 255

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   P+     ++ L +  +   A  +         +    L P ++GG + + 
Sbjct: 256 GVTELIPVLGPVLGAIPAVVLALVESPLKALLVAGLFLAAQQLEGNVLVPRIMGGSVGVH 315

Query: 309 FLPTFFGLVGGVRTMGLLGLFI 330
            L   F ++      G++G   
Sbjct: 316 PLWVMFAMLSATALYGIVGALF 337


>gi|94495544|ref|ZP_01302124.1| hypothetical protein SKA58_05830 [Sphingomonas sp. SKA58]
 gi|94424932|gb|EAT09953.1| hypothetical protein SKA58_05830 [Sphingomonas sp. SKA58]
          Length = 370

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 139/353 (39%), Gaps = 3/353 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  ++    G     ++ + +     ++ FFA +L  +I+     P++    ++    + 
Sbjct: 11  MHLSIKLEDGFFLGFVLLVSVAFALVIEPFFAAILWGVIVAIVFAPVHHRIRAQMPGRTN 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + ++ + IVP   L    + E      KV     + + +   +       W  
Sbjct: 71  AAALLTLLLILLVVIVPAFVLGAALLQEATYFYGKVQSGEINFVRLFYDVIAALP-DWLR 129

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +             T   T+    +   A + G     + +++  M+   FF  RD
Sbjct: 130 PYVQRLGITNFYAAQEMVTRGLTSSFRTLAGQAFQIGQSAFSFFVALGVMLYLAFFLLRD 189

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +++++ +            +      V R+T  G  ++AI +GL+ G  +W   +  
Sbjct: 190 GDWLARKVAAAAPLRAGQRTA-LIEQFVIVTRATIKGSIVVAIVQGLIGGLVFWALDIQG 248

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+    +++P     I +  V+IYL   G ++    L + GA+ +  VD  LRP 
Sbjct: 249 ALLWGVLMGAFSLLPAIGTAIVWVPVAIYLFATGAVWQGVVLVVCGALVIGSVDNVLRPI 308

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LVG   ++P        +GG+   G  G+ IGPV+ AL    W        E+
Sbjct: 309 LVGRDTRIPDYVVLISTLGGLELFGFNGIVIGPVIAALFIATWNIFTRMRGED 361


>gi|73542459|ref|YP_296979.1| hypothetical protein Reut_A2774 [Ralstonia eutropha JMP134]
 gi|72119872|gb|AAZ62135.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 114/336 (33%), Gaps = 8/336 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++   +   +  ++  L     P L A I  +   P       ++         + 
Sbjct: 10  TKRVLLWIAVAAGLFAAIIALAPILTPFLLAFIFAYILTPGVDWMARRRV-PRAIAVAVM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++ + +V +L L      E+ ++  ++ +  +    V       P            
Sbjct: 69  ILLLVVVCVVLVLLLIAVLQREIPQVREQLPMLLKKLNAVVA-----PRLADFGVRVRFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +S+     +    + +  +  +A   G   L+       + I +F+   D   + +
Sbjct: 124 FPGLRSMLSDRFSASPEDLLAMLLNYAKVSGSALLEVAGMAFVIPIVMFYLMMDWHMVMR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +++ L    +    ++++     ++     G  ++ +    +      +AG    V +GV
Sbjct: 184 RIEGLVPRRWVPKVRELTAETDVLLSQYLRGQILVMVILASIYSIGLTVAGFDVGVPVGV 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I       G+ +    + +   I  FI    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGIGLVLAILAALLQFGDWYGLAAVAVVYGIGQFIESFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           I L  L   F L+   +  G  G+ +     A++ V
Sbjct: 304 IGLHPLVVIFALLAFGQLFGFFGVLLALPTCAVLLV 339


>gi|162147067|ref|YP_001601528.1| hypothetical protein GDI_1272 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161785644|emb|CAP55215.1| putative membrane protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 439

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 122/347 (35%), Gaps = 7/347 (2%)

Query: 2   RETMLNPQGI-MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R +  +PQ I +  + +  +  +LYF      P++ AL++            ++     T
Sbjct: 57  RRSRFDPQTICLLILTVLAVFYTLYFAAAIILPIVLALVVNLLLSAPMRVLHTRLHLPKT 116

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + V  +       +       +      +     H   + R +  I       
Sbjct: 117 LSALVLILGVFGVVGAIGTAISVPAAGWIARAPQTMAALQTHLAVLHRPIQMIQAANDRI 176

Query: 121 ELWTKHLSHPQSLKILSETFL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           E +   +S  Q      +  L    ++    +  F S   +    +   +  M++ LFF 
Sbjct: 177 ENFLSVVSGRQGGGGGGQVVLLAPSSSPGGGLGTFGSSVLLGTRAFVGQLFTMMLMLFFL 236

Query: 178 YRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              G S+ ++   +           +I+  + + +      +TII +  GL      W+ 
Sbjct: 237 LAQGDSLLRRFVEIMPTFADKRRAVQIAYQIERNVSLYLTTITIINVLVGLANMLQCWVF 296

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDK 294
           G+P+ +  GV+  ++  IP   P++   +     L +  +   A            +  +
Sbjct: 297 GMPNPLLWGVLAFLLNYIPIIGPLTGIVIYFVVSLFVFPSALQALLPPTVYLCIHLMEGE 356

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           T+ P ++     L  +     L+      G+ G F+   ++A+  +I
Sbjct: 357 TITPMVLARRFTLNPVLVMGSLMFWDWLWGVWGAFLSVPMLAVFKII 403


>gi|321312655|ref|YP_004204942.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
 gi|320018929|gb|ADV93915.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
          Length = 388

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 114/333 (34%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    P++   I+ +   P+      ++     +  ++  + V+ L  + 
Sbjct: 42  FIFTPIIVLLKTISLPIILTGIVFYLLNPVVDFLE-RRRIRRIYSILLLYLLVIGLITIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +         V    +    G        + ++   S     
Sbjct: 101 IVSIIPFLKEQIMSLIDNIPRYV----DVVENQTKQLIGSNFVNQAQQTMNINISDLATK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +      ++        F     +  +SI+ +   LF+  +DG  +   +         
Sbjct: 157 VSDQAATIVNSTFTGVGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTVLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + I  +      L +   I   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIAIVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+  VI        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVAKVITTHLFDWFK 369


>gi|254513811|ref|ZP_05125872.1| permease [gamma proteobacterium NOR5-3]
 gi|219676054|gb|EED32419.1| permease [gamma proteobacterium NOR5-3]
          Length = 379

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 107/323 (33%), Gaps = 7/323 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +   +  + + +   + +  Y L+    P +   ++G+   P+      +   S TF  +
Sbjct: 14  IPINRWPLVFAVFAGMGLLFYLLQPILLPFVLGALMGYLGDPLVDRVEER-GGSRTFGVI 72

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +    L ++ + F     + ++  LV ++ L       V          +  + L  
Sbjct: 73  LVFLFFTTLSLLAMFFAVPVLLQQLDGLVGRIPLVYAWLRDVAVPWLQSRTLVTGARLPQ 132

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              S        S   +    +  +        +   +  L    + +  F+  RD   I
Sbjct: 133 IDWSAELLQNWQSLGKVTATTVSSLTGSGLGLLLGLANIAL----VPVVAFYLMRDWDDI 188

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L    + A   ++     +V+ +   G  I+    G +     W  G+   + L
Sbjct: 189 AGRILHLMPKAWQAGTLQMVSEADEVVGAFIRGQFIVMCALGALYAVGLWFVGLQLALLL 248

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G I  + +++P    I   + S+               +     +   I    L P LVG
Sbjct: 249 GFIAGLASIVPYLGFIVGISASLAAAWLQFHEPLPLLYVAAVFGVGQLIESMVLTPVLVG 308

Query: 303 GPIKLPFLPTFFGLVGGVRTMGL 325
             I L  +   F L+ G +  G 
Sbjct: 309 NRIGLHPVVVIFALMAGGQLAGF 331


>gi|157961667|ref|YP_001501701.1| hypothetical protein Spea_1843 [Shewanella pealeana ATCC 700345]
 gi|157846667|gb|ABV87166.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 383

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 125/351 (35%), Gaps = 5/351 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   ++  +++ +   +K F  PVL   II     P+        +      A I  
Sbjct: 19  ESAIRIGLLFMLLVWTFDIIKPFVIPVLWGAIIAVALMPMTQKLERALKGRRGLAATILA 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + L I P   +       +  +V+ +   +       + ++DIP             
Sbjct: 79  LAGIILLIAPFWIVSSSIFDGVSHIVAVMQAGDIKIPGPTQRVADIPLIGDKLFDAWALF 138

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +      +L        G+              + + +S+         F       S  
Sbjct: 139 ATNLEKAVLHFLPQIKTGVSAAAGMLGSSLGTLVMFIISLAIAGG----FMAHAEKSSAA 194

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++   +     ++ + +    IRS  LG+  +A  + L++GSA +   +P+      I
Sbjct: 195 VSTVAVRVVGKNGEEWTSLTAATIRSVLLGVVGVAFIQSLLIGSALFTFSIPAAGIFTFI 254

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ +      +    +  Y+    +   AT   +W  +   + D  L+P L+G  + +
Sbjct: 255 VFILGIAQLPPLLVVLPIIFYVFSTQDSTPATIFTVW-VLIAGVSDSFLKPMLMGRGVDV 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           P      G +GG+   G++GLF+G V++A+   ++   +   +        
Sbjct: 314 PMPVILIGAIGGMIAAGIIGLFLGAVILAIWYELFTTWLNMEEAQLASAKE 364


>gi|296129870|ref|YP_003637120.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296021685|gb|ADG74921.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 398

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 97/314 (30%), Gaps = 13/314 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            F  V  AL+      P+                  + ++ +  F+  L ++ Y    + 
Sbjct: 70  VFVAVFLALVFTAVLRPLVEVMSR--VMPRGLATAFSLLAGILFFLGMLTYVGYSIATQW 127

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +L ++                          L     S   +  I +           +
Sbjct: 128 NDLSTQFADGINQITDFLES----------GSLPFTITSEQIAEWIDTALAWVQEHAGDL 177

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A+      +    ++   I    FF   G  +     +       A W+        
Sbjct: 178 AGQAAASAGSVVVGFTAVALAIFCSVFFLARGAQLWTWFLNQLPARTRATWQVAGGAGWY 237

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIY 268
                  G  IIA+ +G++      +  VP    L V+  I A IP    P +     I 
Sbjct: 238 TFSGYTRGTVIIALVDGVLAFLLLSVLRVPLAAPLAVLVLIGAFIPLVGAPGAMIVAMIV 297

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L    +++A  + +  A+   +    L+P ++G  + L  +     +  G  T G+LG 
Sbjct: 298 ALAANGLWSAVAVGVGIALIGQLEGHVLQPLIMGKQVSLHPVVVALAVTAGTLTAGILGA 357

Query: 329 FIGPVLMALIAVIW 342
            I   L+A+   ++
Sbjct: 358 VISVPLVAVAWAVF 371


>gi|72162280|ref|YP_289937.1| hypothetical protein Tfu_1881 [Thermobifida fusca YX]
 gi|71916012|gb|AAZ55914.1| conserved hypothetical protein [Thermobifida fusca YX]
          Length = 435

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/354 (11%), Positives = 120/354 (33%), Gaps = 19/354 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++ +IL    +++    PV+ A+ +     P       +          I+ +
Sbjct: 52  RLLIIGVVIALILWGAIYIRVVTIPVILAVFVTALLMPPTQWLRDR-GLGRGLSTTISVL 110

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F   +  +    +     +V+ +  +      +                      
Sbjct: 111 GAVIIFGGVVTLIVLPAISGFDAIVASINESVVTLQQIAASFGM--------------DD 156

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  I S           +   A    +   +  + II +I+   +F   G  + + +
Sbjct: 157 QLINEWIASAQQWIQRNSSQLISGAWAGAVAVGEVLVGIILVIVLTIYFVHSGDELMRWV 216

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG---SAYWLAGVPSHVALG 245
            SL         +    +   VI     G+ ++ + + + +G      +   +   + L 
Sbjct: 217 RSLFPSATRRALRDAGELTYDVIGRYVRGVALVGLIDAIGIGAVLLFVFWDDLSLVMPLV 276

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++T I A +P     ++     +  L+   ++ A  +         +    + P + G  
Sbjct: 277 ILTFIGAFLPVIGAFLAGLVSVLVALVVEGLWMAVVVLAGTIAVQQLESHIIAPRIYGRS 336

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           ++LP       +  G    G+ G F+   ++A++AV+ +     ++ + ++  +
Sbjct: 337 LELPSAVVLLSISVGSIIGGITGAFLATPVVAVLAVLLRNRPFTVEASAQEQET 390


>gi|54308755|ref|YP_129775.1| hypothetical protein PBPRA1562 [Photobacterium profundum SS9]
 gi|46913185|emb|CAG19973.1| putative membrane protein [Photobacterium profundum SS9]
          Length = 373

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 126/349 (36%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  +I+ +   +K F  PVL   II     P+     +         A I
Sbjct: 17  MVESAIRIGLLFILIVWTYDIIKPFVIPVLWGAIIAVALLPLTQKLQNMLGGRRGLSATI 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + P + +       +  L   V           + ++DIP           
Sbjct: 77  LAILGITLLVAPFVLVSGSIFDAVTHLTDIVQSGEIKISGPTQRIADIPVIGGKLFEVWS 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +          +  +           + + +S+      +        +I 
Sbjct: 137 LFSTNLEKAVTHFLPEIKTAVGAMASLVGSSLASLVMFIISLAIAAGFMTHSIACSEAIG 196

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +       + ++ + +    IRS  LG+  +A  + +++G+  ++ GVP+   + 
Sbjct: 197 TVAVRVV----GKHGEEWTTLTAATIRSVLLGVVGVAFIQSMLVGAGMFVFGVPAAGLIT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   I+ +    A I    V  Y+    +  +AT   +W  +   I D  L+P L+G  +
Sbjct: 253 LGVLILGIAQLPALIIVAPVIFYVFSTQDTTSATIFTVW-VLLAGISDNFLKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +P      G +GG+   G++GLF+G V++A+   ++   +   ++   
Sbjct: 312 DVPMPVILIGAIGGMLAAGIIGLFLGAVVLAIWYELFVTWLKLDQDETP 360


>gi|227824347|ref|ZP_03989179.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904846|gb|EEH90764.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 121/350 (34%), Gaps = 13/350 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-----KEESSTFLAVI 65
           +++     +   +   +  F  PVL ++   +  +PI  +         +   S    ++
Sbjct: 10  LVKSAFALLAFTAFCLVADFLLPVLISIAFSYLLYPIVRTLEKITWGRDRRMPSAVAVLL 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + V  +      L  L    + ++  L   +            W                
Sbjct: 70  SFVIFLLFMSAALQILMVPLVTQVNTLTKALPGFAAQVSATMNWFFGPEARAALPANVQA 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   +    +   L  + I    R A     + L        +    F+F +D  ++ 
Sbjct: 130 LINEALTTAGRNVMALFQDLISSTFRVARSMASMVL--------VPFLTFYFLKDWRTLK 181

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +  +   A  +K+   +  ++ +    M  + +     L    ++ GV   + LG
Sbjct: 182 AMAVKVFPYDRQALAEKVLEDIGSMLCTYVDNMLKLCLVAAGCLTVGNYVLGVQYTLVLG 241

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  +  +IP    +  T V++++ +      A  + ++  +   +  + + P LVG  I
Sbjct: 242 LLAMLTELIPLVGSVVGTLVAVFVALLQRPALALQVLIFYLVYYQVDSQVIMPTLVGKAI 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L  +     ++ G +  G++GL     ++A+I +++       +   ++
Sbjct: 302 TLHPVLIILSVIIGGKLAGVIGLIFAVPVLAIIKILYGYFWHWGEPLPKE 351


>gi|187929927|ref|YP_001900414.1| hypothetical protein Rpic_2859 [Ralstonia pickettii 12J]
 gi|187726817|gb|ACD27982.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 109/340 (32%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +  + L  L  L     P + A I+ +   P        +         + 
Sbjct: 10  TKRTLAWIAVALVFLALLKALAPTLTPFVFAFILSYILHPGVEWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  + +  +L +      E+  +  ++                 P         +  
Sbjct: 69  ILVLSVVGVALMLLILAVLQREIPAIHEQLPGMLAKLNAFLS-----PRLAEMGLHVSFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               ++L          + +  +  +    G   +        + I +F+   D   + +
Sbjct: 124 FPGLRALLTEQLAASPDDVVARVLTYLRVSGSAAIQVLGIFFLVPIVMFYLLMDWNMLMR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +L++     +    ++++     ++     G  I+ +   +   +   LAG    + +G+
Sbjct: 184 RLETAVPRRWLRKTRELAAETDGLLSQYLRGQIIVMLVLAVYYSAGLALAGFDVALPVGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I       GN++    + +   I  F+    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGVGLTLAILAALLQFGNLYGLLAVAVVYGIGQFLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPMSAVLLVGLRQ 343


>gi|15615484|ref|NP_243787.1| hypothetical protein BH2921 [Bacillus halodurans C-125]
 gi|10175543|dbj|BAB06640.1| BH2921 [Bacillus halodurans C-125]
          Length = 361

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 126/355 (35%), Gaps = 13/355 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++  +I+++  +  +  +         FAPV+ A I+ +   PI      K   +    
Sbjct: 13  IVLVLLIIYLGSLVDWIFRPIVVFVQTLFAPVIIAGILYYLFRPIVGLLSKKM--NRGLS 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++  F    L +      + + L + +             L            
Sbjct: 71  ILILFLMIIGAFTAFSLIVGPELQRQFQSLYNNLPTLINQVRDTFIALQS----NELFNR 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + +  +      I        + I  I    + F     ++ + ++ +   LF+  ++G 
Sbjct: 127 FQESETFQPEEMISRFVNSLNDIIGTIGANITGFIGALANFFIILVLVPFILFYLLKEGE 186

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  QL  L         + I   + K++ S   G  I++   G++   AY + G+   +
Sbjct: 187 KLPVQLLKLFNKKQQHEGRLILADMDKMLSSYIQGQIIVSFCVGILCYIAYLIIGLDYAL 246

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++     +IP   P   T  ++ +    +   A  + +   +   I    + P ++G
Sbjct: 247 ILALVAMFTNVIPFVGPWIGTFPAVIVAFIDSPLTALIVVIVVVVIQQIESNLISPQVMG 306

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             + +  +   F L+   R  G++G+ +     A+  VI   S    K  K+ + 
Sbjct: 307 KKLAIHPITIIFILLVAGRFAGVVGMLLAVPTYAVGKVIVTHSYRLWKLRKQPVE 361


>gi|16080168|ref|NP_390994.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221311057|ref|ZP_03592904.1| hypothetical protein Bsubs1_16941 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315383|ref|ZP_03597188.1| hypothetical protein BsubsN3_16852 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320300|ref|ZP_03601594.1| hypothetical protein BsubsJ_16825 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324583|ref|ZP_03605877.1| hypothetical protein BsubsS_16971 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8928520|sp|O32086|YUBA_BACSU RecName: Full=UPF0118 membrane protein yubA
 gi|2635600|emb|CAB15094.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 388

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 114/333 (34%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    P++   I+ +   P+      ++     +  ++  + V+ L  + 
Sbjct: 42  FIFTPIIVLLKTISLPIILTGIVFYLLNPVVDFLE-RRRIRRIYSILLLYLLVIGLITIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +         V    +    G        + ++   S     
Sbjct: 101 IVSIIPFLKEQIMSLIDNIPRYV----DVVENQTKQLIGSNFVNQAQQTMNINISDLATK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +      ++        F     +  +SI+ +   LF+  +DG  +   +         
Sbjct: 157 VSDQAATIVNSTFTGVGNFIGALTEIIISIVTVPFILFYLLKDGRKLPVYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTVLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + I  +      L +   I   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIAIVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+  VI        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVAKVITTHLFDWFK 369


>gi|327537466|gb|EGF24190.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 435

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 108/340 (31%), Gaps = 11/340 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++  +   + L  LY       P+  A +   +  PI +             + +  V
Sbjct: 68  RGMVTAIAAILTLGMLYIASDLLVPIAIAALAYLSLRPIEAKICRW-GVPQAAASAMLIV 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     + +  L+      +      +         V   L+ +     A +  T  L 
Sbjct: 127 GLFSSLALIIALLYSPAQQWLTSAPESLAAIRSKFQSVAEPLTAVDRAGTAVDDATIPLK 186

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +    ++           +     +           +  + +  FF    G  +  + 
Sbjct: 187 EDEPRIEVAYQKPSIVDETVLINQTGQ-------MLAFVAAIAVLTFFMLSTGDDLLNRT 239

Query: 189 DSLGEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +  +        K    + + +      +T I IG G+ +    WL G+P+ V  GV+
Sbjct: 240 LGVLPNSRSRGEVLKKIGDIQQSVGRYLAQITCINIGLGVAVTFVMWLVGMPTPVLWGVM 299

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            A+   IP   P++ T++           +  A        +   +  + + P ++G  +
Sbjct: 300 AALFNFIPYVGPLAATSIVFLAAASSFDTMSRACLTAFAFWLTTAVEGQFVTPTILGKTL 359

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           K+  +     +       GL G+F+   L+ +   I+   
Sbjct: 360 KVGPVVVLIAVAFWGFLWGLSGVFLAVPLLIVQRKIFASF 399


>gi|119477618|ref|ZP_01617768.1| hypothetical protein GP2143_09155 [marine gamma proteobacterium
           HTCC2143]
 gi|119449121|gb|EAW30361.1| hypothetical protein GP2143_09155 [marine gamma proteobacterium
           HTCC2143]
          Length = 364

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 129/339 (38%), Gaps = 4/339 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   ++  II++ +     FF  ++ ALI+    +P+  S   K   +S   A +  +  
Sbjct: 22  IRFGVVTIIIVLCIQVFAPFFGIMMWALILAVALYPLNLSLAKKFNGNSGRAAALIVIIG 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L   P + L       + +L ++      H  P    ++++P           + +  
Sbjct: 82  LLLIGGPAVALGKSFTSHLLDLYTEFNSGKLHIQPPNSSVAELPLIGETLNRVWTNAADD 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + +               A+        +  S++   I + +      ++ + L  
Sbjct: 142 LEQTLKNVEPQLKELSKKALVIAASTTGEVFSFFASMVIAGIMMAYGRSGSQAMLEILQR 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +          K+  +    IRS   G+  +A  + L+LG+ +  AG+P    LGVI  +
Sbjct: 202 V---SSEEKGGKLQALCVGTIRSVATGVIGVAFIQALLLGAGFIFAGIPGAGILGVIVLV 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++   A +       YL   G+   A    F        + D  L+P L+G  +  P 
Sbjct: 259 VGILQIPAALVTLPAIAYLWFGGDASTASNIAFTVYLFVAGLADNVLKPMLLGRGVDAPM 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                G +GG+   G++GLF+G VL+ +   I+ E +  
Sbjct: 319 PVVLLGALGGMVVAGIMGLFVGSVLLTVGYKIFMEWVKE 357


>gi|212212870|ref|YP_002303806.1| riboflavin transporter [Coxiella burnetii CbuG_Q212]
 gi|212011280|gb|ACJ18661.1| riboflavin transporter [Coxiella burnetii CbuG_Q212]
          Length = 363

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 117/355 (32%), Gaps = 12/355 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P+ +  +  +F + + + F   +  PV+ ++++ +            +       
Sbjct: 18  RHFSDPEALALFFTLFFVFLLIEFFGKYLLPVVISVVLAYLFASPVRWLERWRFPH-WAA 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I  +  + +F++ L  L      ++  +V +   A   G             ++ ++ 
Sbjct: 77  VTIVYLFFLGIFLLALFGLLPLMWKQLASMVHEFPKAITKGQAWMTEYMHRYPKLFPTDP 136

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                 +                  FI  F+       ++  L ++ + + +FFF +DG 
Sbjct: 137 IANLAGYLHQQSAR--------IGQFILSFSLASIPGIIEAILYLVLVPLLVFFFLKDGG 188

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           SIS  L            + +   + + I +   G  I  I   +V   A+ L  +    
Sbjct: 189 SISNWLSRFLPERQG-LIRIVWHEMNQKIGAYVRGRVIEIIIVSIVAVIAFALLRLQYAF 247

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+  +  ++P    I  T       L+  G   +   L +  AI + +    L P L
Sbjct: 248 LLGVLLGLSVIVPYIGAIVVTIPIAIVGLMQWGLSAHFAYLMIVYAIIITLDGNLLVPLL 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               + L  +     ++      G  G+F    L  L+  +      A     E 
Sbjct: 308 FSEAMDLHPIVIILSVLVFGGIWGFWGIFFAIPLATLVKTVLNAWPKARISQNET 362


>gi|227327021|ref|ZP_03831045.1| putative inner membrane protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 369

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 137/355 (38%), Gaps = 6/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+   F +      +   ++
Sbjct: 12  LARILFSLVFITIMIIACFWVVQPFILGFAWACMVVIATWPMLIKFQALLWGRRSLAVLV 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T+ ++ LFIVP+  L    +     L+S          P   WL+ IP  G      W 
Sbjct: 72  MTLLLILLFIVPIAVLVSSVVDNSSALMSWGARQENFSPPTLEWLTSIPLVGEKLFNSWQ 131

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    S               ++   A+  G     + +    M+I     Y  G ++
Sbjct: 132 ALLQSGGSGLFAKVQPYFGKTATWLVAQAAHVGR----FLMHCSLMLIFSALLYYKGEAV 187

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++ +      L          +  + IR+  LG+ + AI + ++ G    L+G+P    L
Sbjct: 188 AKAVRHFAIRLGQERGDAAVILAAQSIRAVALGVVVTAIVQSVLGGIGLGLSGIPYTTLL 247

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  +  +   G         I+L   G+    T L +W       +D  +RP L+   
Sbjct: 248 TVLMFLCCLAQLGPLPVLIPAIIWLYWTGDTTWGTILLVWSCFV-GTIDNIIRPVLIRMG 306

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             LP L    G++GG+   G++G+FIGPV++A+   +    +  I E +  +S N
Sbjct: 307 ADLPMLLILSGVIGGLLAFGMIGIFIGPVVLAVSYRLLFAWMREIPEPQNILSVN 361


>gi|220935418|ref|YP_002514317.1| permease [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996728|gb|ACL73330.1| permease [Thioalkalivibrio sp. HL-EbGR7]
          Length = 368

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 106/332 (31%), Gaps = 11/332 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-----KKEE 57
           +     Q +   +      + +Y+L+    P L A +  +   P+           K   
Sbjct: 4   QPGAASQRLTLLLFFAAAGLLVYWLRPILTPFLLAALFAYLGNPLVLRLQREGRRWKWRL 63

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T   ++  + +    ++ +L L      E+   +  +               +   G+
Sbjct: 64  PRTAAVILVFLLLFLGLLLAVLTLVPVLQRELARFLEWLPQWLAWFRAEALPWLENRFGL 123

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                    LS   S             +  + R     G +   + L+++ + +  F+ 
Sbjct: 124 PLEGPEMGTLSGLLSEHWQQAGEWALGALGSMGRS----GGLVFAWLLNLVLVPVVTFYL 179

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            RD   +   L  L          +I R    V+ +   G  ++ I          W AG
Sbjct: 180 LRDWERLVAALHGLLPRSIEPRVVRIVRESDAVLATFIRGQLLVMISLAAFYAVGLWFAG 239

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +   +A+GV   +++ +P    I    +     LL   + +    +     +   +    
Sbjct: 240 LDLAIAVGVTAGLVSFVPYLGVIVGVGLGVAAALLQSTDPWLLIWVLAVFGVGQLLESLV 299

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L P+LVG  I L  +   F ++ G +  G  G
Sbjct: 300 LTPWLVGDRIGLHPVAVIFAVLAGGQLFGFFG 331


>gi|302671010|ref|YP_003830970.1| hypothetical protein bpr_I1651 [Butyrivibrio proteoclasticus B316]
 gi|302395483|gb|ADL34388.1| hypothetical protein bpr_I1651 [Butyrivibrio proteoclasticus B316]
          Length = 460

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/341 (9%), Positives = 92/341 (26%), Gaps = 29/341 (8%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES-----------------------STFLAVIAT 67
            + ++  +++ F   P+      +                                +I  
Sbjct: 47  LSGIIIGIVLAFILIPLMEGIEHRILIPIYKKRGIDVSMAISADKKKRSQMRKISILITM 106

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS------DIPGGMWASE 121
              + +       +    +  ++E+ + + +  ++                         
Sbjct: 107 AIFLFMAYSLFRVIIPQLVSSIREIANNLPIYIKNVDDYSNLFLANNPELQQIIDSQLDN 166

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +    S+     +          + +  R       I  D  +  I  I  L    R  
Sbjct: 167 YYETLSSYLTQKLLPLLPGNVNTIVRYASRSFISGIKIVFDLVVGFIVAIYVLNSKERFT 226

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +   ++ +           R V    +    G  + ++  G++      +  +P  
Sbjct: 227 TRGKKMAYAVLKEDAANELISGFRFVNYTFQGFIGGKLVDSLIIGVICYIGCMMLKIPYP 286

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V + VI  +  +IP   P     +   +L+  +   A    ++  +        L P ++
Sbjct: 287 VLISVIVGVTNIIPFFGPYIGGGMGALILVLISPVKALVFLIFVIVLQQFDGNILGPTIL 346

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G    L      F +       G++G  +G  + A+   + 
Sbjct: 347 GNSTGLSSFWVIFAITLFGGLWGVVGWLVGVPIFAVFYALV 387


>gi|300112910|ref|YP_003759485.1| hypothetical protein Nwat_0191 [Nitrosococcus watsonii C-113]
 gi|299538847|gb|ADJ27164.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 115/357 (32%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ +   +++ +  +++  +    APVL++L+I +    I              
Sbjct: 9   QRHFADPQVVGLAILLAVGFITVVLMGRMLAPVLASLVIAYLLEGIIGYMERW-HCPRWL 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  ++ M      +  L      ++ E   ++ +    G  +   L +    +++ E
Sbjct: 68  AVTLVFITFMAALFSVIFGLLPLLSQQLAEFFQQLPIMIARGQELLLSLPEYYPNLFSDE 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  +S                +   +    M  +   + ++ M + +FFF +D 
Sbjct: 128 QVYDLMNALRSELAQW--------GQKVLSVSLASVMGLMTLAVYLVIMPLLVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L+            ++   V   I +   G  +  +    V    +   G+   
Sbjct: 180 ARLIGWLEQYLPRE-RKLAAQVWHDVDFQIGNYVRGKFLEILIVCAVTAITFTFMGLQFS 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    ++ T    ++     G   +   L     I   +    L P 
Sbjct: 239 MLLSVLVGLSVIIPYIGAVAATLPVAFVAYFQWGFSIDFAYLLGAYGIIQALDGNVLVPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  + K         +  I
Sbjct: 299 LFAEVVDLHPVAIIVAILVFGGFWGFWGIFFAIPLATLVQAVLKAWPSLPPPEESAI 355


>gi|261880587|ref|ZP_06007014.1| membrane protein [Prevotella bergensis DSM 17361]
 gi|270332706|gb|EFA43492.1| membrane protein [Prevotella bergensis DSM 17361]
          Length = 367

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 111/345 (32%), Gaps = 13/345 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           + +   +++  +     +L G   P   A +  +  +PI     +K +        +I  
Sbjct: 12  RWVGAGLLVIAVFYLFNYLSGALLPFAIAWLFAYLLYPIVRFIETKAKIRFRVLSIIITL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ +  +    +    + + ++L   +             +S+      +        
Sbjct: 72  LLVIVVIGLITYLIIPPMIEQFQKLYDILNNWVNQTTH-SNGISEWISEWVSENQKQIEG 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +         + + + AS    +     +     ++ +FF   D   ++  
Sbjct: 131 VLKSPDFTDAVKSAVPKVFNIVGQTASVVISVVASLIV-----LLYMFFILLDYEYLAAN 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +       +W+++   V + + +   G  ++A+  G++    + +   P  + LG++
Sbjct: 186 WIRIFPKKNRPFWQELMGDVARELNNYIRGQGLVALCMGIMFCIGFTIMDFPMAIGLGIL 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             I+ ++P    ++    +   +       +              +   I D  + P ++
Sbjct: 246 IGILDLVPYLHTLALVPTAFLAMLKSADTGQNFWVVFGLAVGLFIVVQIICDMVVTPKIM 305

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G  + L        L       G +GL I   L  LI   WK  +
Sbjct: 306 GKVMGLNPAILLLSLSVWGTIFGFIGLIIALPLTTLIIAYWKRYV 350


>gi|269838060|ref|YP_003320288.1| hypothetical protein Sthe_2036 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787323|gb|ACZ39466.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 380

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 93/301 (30%), Gaps = 11/301 (3%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            +    S    ++  +  M + +    F+      ++  LV ++         V      
Sbjct: 71  ERLRIPSGIAVLLVYLVAMAVVVAIGWFVLPPLFGQVATLVDEIPNYVDRYQAVRESWER 130

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +       E + + +               +  +  +    +          L ++ + +
Sbjct: 131 LREQYPELEPFEEQV-----------ATAGSRLLSTVGSRLAELPSELFSLFLDVLSIFV 179

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                      +   + SL         +++ R +   I        I+     ++   A
Sbjct: 180 ISMLLVTTRGRLLSFILSLVSPDHRDTAERVMREMWDRIGYYVRAKLIVMTIIAVITYVA 239

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             + GVP  V L ++  +   +P   P       + +           +F    +     
Sbjct: 240 LIIIGVPYAVLLSIVVGLGEAVPRIGPWLARIPLLTIAALQGWTTFLLVFGASLVIENAK 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P++ G  + +  L  F  ++ G   +G+ G F+     A++ V+++E I+  +  
Sbjct: 300 GYAISPWVEGDQLDIHPLLVFVAVLVGAALLGVAGAFVAVPAAAMVQVMFEEVIIPWRRA 359

Query: 353 K 353
           +
Sbjct: 360 Q 360


>gi|144899178|emb|CAM76042.1| protein containing domain of unknown function DUF20
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 353

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 111/343 (32%), Gaps = 8/343 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    + + LV LY L+G   P ++ + + F   P+      K   S T      T    
Sbjct: 9   VWLAGLAVTLVLLYLLRGVMLPFVAGMALAFFLDPLADRLE-KAGLSRTTATATITGIFF 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +   + L      ++     ++    +            P  +      +K      
Sbjct: 68  LLVVTLAVLLLPIIQEQVVAFAERIPSYVETLNDRLH-----PLIVELKRKLSKGDMDKL 122

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +             + +     G+  ++    +    I  F+  RD   +  ++DS 
Sbjct: 123 RTSVGEHAGEAVTWALGVVKQVLTGGLAIINVLSLLFITPIVTFYMLRDWDLMVAKVDSW 182

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    ++    + + +     G   + +  G   G    L G+   + +G+ + ++
Sbjct: 183 LPREHADTIREQVAEINRTLAGFIRGQASVCLALGAFYGVGLSLVGLDLGLVIGLGSGLI 242

Query: 252 AMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +P    I+     + + L    +      +         +    L P LVG  + L  
Sbjct: 243 SFVPYLGTIAGFITGIGLALAQTQSWELPAMVAGIFVAGQMLEGNVLTPKLVGDKVGLHP 302

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +   F L+ G    G +GL +   + A+I V+ + ++     +
Sbjct: 303 VWIMFALLAGGGLFGFVGLLLAVPVAAVIGVLSRSALRRYLRS 345


>gi|109898796|ref|YP_662051.1| hypothetical protein Patl_2481 [Pseudoalteromonas atlantica T6c]
 gi|109701077|gb|ABG40997.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 356

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 106/357 (29%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +M  +++  + V L  L     PVL A +I +      S    +      F
Sbjct: 10  KRKFSDPDSVMLLIMLIAVSVLLALLGTILMPVLVAAVIAYLLDWPVSQLS-RSGMRRGF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + L I+  + +      +   L+ ++     H       L +         
Sbjct: 69  ACSVVIFGFLTLCILTFIGIVPVVSQQSINLIREMPQIWGHAQVWLLQLPEQYPDFVHLG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L       +        +  + +   +           + ++ + + +FF  +D 
Sbjct: 129 DVQDMLDGVNERIV--------SLGEQLLSASVSSLGSLASLLIYLVLVPLMVFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  L         K++   +   I +   G  I  I  G +    + L  +   
Sbjct: 181 DQLLDNLSPLLP-SQRRLIKQVGSEMNTQIANYIRGKVIEIIIVGTISAVTFALMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + LGV+     +IP       T       L   G   +   L +   +   +    L P 
Sbjct: 240 LLLGVLVGFSVLIPYIGAAVVTIPVAVVALFQWGITPDFWWLMIAYGVIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  +       ++E    I
Sbjct: 300 LFSEAVSLHPVYIIIAVLFFGGLWGFWGVFFAIPLATLVKAVINAWKGPLQELPPAI 356


>gi|269138449|ref|YP_003295149.1| putative permease [Edwardsiella tarda EIB202]
 gi|267984109|gb|ACY83938.1| putative permease [Edwardsiella tarda EIB202]
 gi|304558475|gb|ADM41139.1| Putative permease PerM [Edwardsiella tarda FL6-60]
          Length = 359

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 113/350 (32%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I    I+ +    +YF  G  AP+L A+++ +               S  +
Sbjct: 10  RRRFTDPQAIALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTHKLQ-LVGCSRLW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + ++ +L +      +   L+S +             L      +    
Sbjct: 69  AVCVVLLLFIGIVLLTMLVVIPIAWQQGLALMSDMPKMVTRFYEYAATLPRRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    + + +         + + +F+    +  +   + ++ + + +FF  +D 
Sbjct: 125 ----MDAGIIDVVVENLRARMALMGESVLKFSLASLVGLVTLAIYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  +          ++   + + I +   G  +  +  G+     + + G+   
Sbjct: 181 GQMLNALRRVLPRE-RGLAGQVWLEMNQQITNYIRGKVVEMLVVGVATYLVFLVLGLNYG 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGVSVLIPYIGAVLVTIPVVLVALFQWGMGADFWSLFIAYLVVQGLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LYSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDDF 349


>gi|218676834|ref|YP_002395653.1| hypothetical protein VS_II1074 [Vibrio splendidus LGP32]
 gi|218325102|emb|CAV26948.1| putative membrane protein [Vibrio splendidus LGP32]
          Length = 366

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 123/337 (36%), Gaps = 5/337 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L  +PL
Sbjct: 24  LVYWCFAILRPFILLVIWGAIIATALYPVAVAISNKTGMSKGKASALLSFIGVILLFIPL 83

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L         +L++ +             L DIP             S+      +  
Sbjct: 84  AALSSGIYTSASDLMTGLQDGTLSLPKPKESLQDIPFIGEKVYSTLVAASNNIEGTFIKY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                             G  F+ + +S I        F  +       +  L   L   
Sbjct: 144 ADELKQFATKAASVLGSLGGGFIQFIISTIIAGA----FMSNADKCQTGVTHLVARLTDG 199

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I    
Sbjct: 200 KGEELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAAFWALAVLLIAIIQLPP 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++     IY+    +   A+   +W  +     D  L+P L+     +P L    G +G
Sbjct: 260 ILALLPAIIYMFSVESTLAASLFLVWCILVSG-SDAILKPMLLSRGSHIPMLVILLGALG 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+   G++GLF+G V+++L   +    +   ++N+E+
Sbjct: 319 GMAMSGIVGLFVGAVILSLSYELMMAWLGLEEKNQEE 355


>gi|254426867|ref|ZP_05040574.1| conserved domain protein, putative [Alcanivorax sp. DG881]
 gi|196193036|gb|EDX87995.1| conserved domain protein, putative [Alcanivorax sp. DG881]
          Length = 363

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 121/358 (33%), Gaps = 13/358 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              + + +   +++ +I +++ F  G  APV +A+++ +    +  +   +         
Sbjct: 12  YFSDEEAVYLVVLLLVIGLTIAFFGGMLAPVFTAMVVAYLMQGLVGALERR-GVKRMLAV 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +     M L I  L+ L      ++  LV  ++    ++G    R L      + + E 
Sbjct: 71  GLVFTLFMGLLIATLVVLLPMVWRQLVLLVQDQLPHVLKNGEIWLRGLPAHYPEIISMEQ 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  Q     +   + T  +  IP           +  + ++ + + +FFF +D  
Sbjct: 131 VNSIVAVIQREVAEAGQGVLTLSLASIPNLV--------EIMVFLVLVPLLVFFFLKDRE 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++   +              + + +   I +   G  I  +  G     A+ L  +   V
Sbjct: 183 TLVNWMLGFLPRK-RRILSHVWQEMDGQIANYVRGKAIEILLVGGATFIAFVLLDMNYAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  ++P       T     +     G   +   + +   I  FI    L P L
Sbjct: 242 LLAVLVGLSVVVPYIGATVVTLPVAAVAYVQFGWGGDFALVMIVYGIIQFIDGNILVPLL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               + L  +     ++      GL G+F    L  LI  +          +  K+ +
Sbjct: 302 FSEAVNLHPVAIITAILLFGGLWGLWGVFFAIPLATLIKAVINAWPRQADYSPGKLEA 359


>gi|229828723|ref|ZP_04454792.1| hypothetical protein GCWU000342_00789 [Shuttleworthia satelles DSM
           14600]
 gi|229793317|gb|EEP29431.1| hypothetical protein GCWU000342_00789 [Shuttleworthia satelles DSM
           14600]
          Length = 418

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 126/351 (35%), Gaps = 13/351 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVS 69
           ++  ++  +     PVL  L+I +   P+ + F  K          +    F      + 
Sbjct: 34  VLAGAISTVAAVTRPVLLGLVIAYVLHPLVNVFERKVFSRMKHFRPKTRHVFSVTATILV 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L ++ ++ L    +  +   +            +     D    +  +     +LS 
Sbjct: 94  VLLLIVLLMIALIPQLIGSVVRFLQNAGDYIASLQKLIALAVD---ALRQNGRDVSNLSD 150

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +   T L  +    +  F +  G+   D+ + II  I  L    R    + Q + 
Sbjct: 151 MIKEGLDGLTNLLPSQPSQLLHFVTNIGVGVFDWVIGIIMAIYFLMDMERWMGGLRQLMG 210

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         +  ++   +++     G  +  +           +  +P  V L ++  
Sbjct: 211 LLLSRQRYRELRDFAKRSDRILIRYIGGTILDGLIVAFANFIFMMIMQMPYAVLLSLVVG 270

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  + P   PI   A+   +L+  N ++A    ++  I   I    ++P L G  + +  
Sbjct: 271 VTNLAPTFGPILGGAIGSLILLLINPWHALWFLIFTIILQTIDGYVIKPRLFGNTLGVAG 330

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM-AIKENKEKISSN 359
           +     ++ G +  G++G+ +     A+   +++ESI+  ++  +E+  + 
Sbjct: 331 IWILICIIVGGKAFGVIGILLAIPFAAISDFVYRESILVRLRHFRERRDAE 381


>gi|146319385|ref|YP_001199097.1| permease [Streptococcus suis 05ZYH33]
 gi|146321590|ref|YP_001201301.1| permease [Streptococcus suis 98HAH33]
 gi|253752410|ref|YP_003025551.1| hypothetical protein SSUSC84_1565 [Streptococcus suis SC84]
 gi|253754236|ref|YP_003027377.1| membrane protein [Streptococcus suis P1/7]
 gi|253756170|ref|YP_003029310.1| membrane protein [Streptococcus suis BM407]
 gi|145690191|gb|ABP90697.1| probable permease [Streptococcus suis 05ZYH33]
 gi|145692396|gb|ABP92901.1| probable permease [Streptococcus suis 98HAH33]
 gi|251816699|emb|CAZ52341.1| putative membrane protein [Streptococcus suis SC84]
 gi|251818634|emb|CAZ56469.1| putative membrane protein [Streptococcus suis BM407]
 gi|251820482|emb|CAR47224.1| putative membrane protein [Streptococcus suis P1/7]
 gi|319758816|gb|ADV70758.1| permease [Streptococcus suis JS14]
          Length = 376

 Score =  123 bits (309), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 109/344 (31%), Gaps = 7/344 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------KKEESSTFLAVIATVSVMC 72
           I  ++  L G    +    I  F                   K+   +   V   +    
Sbjct: 28  IYGAIQQLLGSMNSLFIGAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFAL 87

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    ++ +    +  + ELVS    A    +       +  G +             Q 
Sbjct: 88  IVTGLVVIVLPTLVTTVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQL 147

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +   + L T  +  +    +      +   ++  F +  L           + L +  
Sbjct: 148 KNLTLISSLVTPILSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATL 207

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     I  ++        +   + A   G ++  +Y L+G+P     G++  +++
Sbjct: 208 PEKAVRVVNYIGEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLS 267

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            +P   P S   +S   +   N   A        I   I    + P +VG  + LP L T
Sbjct: 268 FVPYIGPFSACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFT 327

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               + G    GLLG+     + A++  + +E + +  + ++++
Sbjct: 328 LAAALIGGNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQDEL 371


>gi|312622433|ref|YP_004024046.1| hypothetical protein Calkro_1371 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202900|gb|ADQ46227.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 351

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 113/352 (32%), Gaps = 10/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +   I    I+     ++        P L AL + +   P      +K   S   
Sbjct: 8   KRYFTDILFIALIAIVIYFFANMKAFWPILIPFLIALFLSYLLKPCVDFLETKIR-SRDI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I+   +  + I+  ++     + E K+L+  +                         
Sbjct: 67  SILISFAIIFGITIMVFVYFIPLFVSETKQLIQNIPDYIILIQKWF---------FEIDS 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L+      + + +                         L  + + I  F+  RD 
Sbjct: 118 KLLNKLNIDIKEILNANSINIEGISKQTLSIFLNIVKSISSNILYYLLIPIISFYILRDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L    +      I   + +V+     G  + A   GL+    + L  V   
Sbjct: 178 KRLVMWIKWLLPEKYRKEGLYIFVDINRVLHQYIRGQLLDAFIVGLLSFVGFSLLSVRYA 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +    + P ++
Sbjct: 238 ALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDSFIISPRVI 297

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 298 GSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|298346059|ref|YP_003718746.1| integral membrane protein [Mobiluncus curtisii ATCC 43063]
 gi|298236120|gb|ADI67252.1| integral membrane protein [Mobiluncus curtisii ATCC 43063]
          Length = 487

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + +IL  +  +   F P+  AL++     P++           T  A+I+ +
Sbjct: 68  RFLAIVAALGLILYGITKVSIVFIPLAIALLLTLLLEPMHLRLQKW-HIPKTLSAIISLL 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +             L+ K        +                +L  + + 
Sbjct: 127 VGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKALAWL--------SDGPLKLDQEQIE 178

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T   T     I   A            +I+  +  LFFF +DG  I   L
Sbjct: 179 KYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTTILISLFCLFFFLKDGRQIWIWL 238

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VI 247
             +          + +      +        ++A+ + + +     + G  S      ++
Sbjct: 239 IRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVDSVFISIGAAVLGAGSMTIPLALL 298

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I A IP    ++      + LL+      A  + +       I    L P L+   + 
Sbjct: 299 IFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLIVILAVQQIESNVLHPMLMSSAVN 358

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L    G+  G    G++G  +   ++A    + 
Sbjct: 359 LHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTVV 394


>gi|323492023|ref|ZP_08097188.1| hypothetical protein VIBR0546_07984 [Vibrio brasiliensis LMG 20546]
 gi|323313752|gb|EGA66851.1| hypothetical protein VIBR0546_07984 [Vibrio brasiliensis LMG 20546]
          Length = 361

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 132/332 (39%), Gaps = 2/332 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            +   ++ A II    +PI+     K  +    +++++ + +  + + PLLF+F   + +
Sbjct: 31  PYINSIVMAFIISLLMFPIHEWIERKLPKHKNTVSLLSCIVLTFIIVFPLLFVFAAIVQQ 90

Query: 89  MKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                  V     HG I        +   +     +    +              T+   
Sbjct: 91  GSAFSQNVYQWVTHGGIQTIFEHPWVVKSLSLVNTYLPFDTIEPQEIAQKVAQFATSFGS 150

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   +++      ++ +    M+  LFF  RD   I   +  +   L  +   K+   V
Sbjct: 151 NLVGISAKILGDATNFLMDFFLMLFVLFFLLRDHDKIISAIRHILP-LSRSQEDKLLDEV 209

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +V +S  +G  + AI +G   G   WLAG P      ++     +   G  + +   +I
Sbjct: 210 EQVAKSAVMGSFLTAIAQGFAGGIGMWLAGFPGLFWGTMMGFASFIPVVGTALIWIPAAI 269

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           YL + G+   A  L +W    +  +D  LRPFL+ G   +  L  FF L+GG+   GL+G
Sbjct: 270 YLFLTGDTTWAIFLTVWSVAVVGSIDNLLRPFLMQGSAGMNTLMIFFSLLGGLHLFGLIG 329

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L  GP++ A+  V++       +   ++   +
Sbjct: 330 LIYGPIIFAVTMVLFNIYEEEFQGFLDQQDRS 361


>gi|149374547|ref|ZP_01892321.1| hypothetical protein MDG893_10881 [Marinobacter algicola DG893]
 gi|149361250|gb|EDM49700.1| hypothetical protein MDG893_10881 [Marinobacter algicola DG893]
          Length = 357

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/332 (12%), Positives = 99/332 (29%), Gaps = 9/332 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +    IL +LY       P++ A++     +P+      K        +++  + V+   
Sbjct: 20  LFALGILYTLYVAHQIVLPIVLAVLTSLLLFPLVKKAYDKAGIPRALSSLVLMIVVIAGL 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 +    +   ++    +         +   +  +       E     LS  +   
Sbjct: 80  AGVGAAVATPALEWAQQAPQGISRLLMGESGIKNQIDKVNESAKKVEESMDELSKDEKTT 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +      +  + +   A        +    +   +   +F    G  I          
Sbjct: 140 TNTVVLKTDSWRNQLLTKAR-------NGAAGLALALALTYFLLVGGDRIILNFVRQLPK 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I+R   + I      +++  +  G+  G   W  G+P     G++  +   I
Sbjct: 193 RQRRNVLQIARDSQQQIAQYLAVLSLSNLLVGITTGLICWAVGLPDPAVWGLVAGLARFI 252

Query: 255 PGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P    I    +   +       ++      L        V   + P++ G  + +  +  
Sbjct: 253 PYLGVILTIILLAVVSATSLDTLWTMAIAPLGYLALTSTVGFFIEPWIHGFRMAINPVVI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F  +       G +G+ +   LM +I V+ K+
Sbjct: 313 FVSIFFWGWLWGPVGVLLAVPLMTIIQVVLKQ 344


>gi|153006305|ref|YP_001380630.1| hypothetical protein Anae109_3462 [Anaeromyxobacter sp. Fw109-5]
 gi|152029878|gb|ABS27646.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 418

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/370 (12%), Positives = 109/370 (29%), Gaps = 22/370 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----SSTFLAVIA 66
            +  +I  ++            P + A +  +   P+ S     +            V+ 
Sbjct: 24  ALTAVIWALVAAIFVIAWPVLLPFVLAALAAYVIDPLISRLARTRVGGHAVPRWGAVVVV 83

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  L  +  + +F     E    + ++        P            +  +     
Sbjct: 84  YLGIGALAYLAGVSIFPQIYREAVRGLVELRDFLASVTPEKIDAWARAIDAFLEQYGIPV 143

Query: 127 LSHPQSLKILSETFLKTNGIDF-----------------IPRFASRFGMIFLDYCLSIIF 169
              P         F                         +  F+              I 
Sbjct: 144 DVLPYEGPRQGARFSVDLAAGIAAALRDASESMRGRVGDVVAFSRAILAGTFQAMFFSIL 203

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           + +   F   D   I +  ++L        ++++   +   +     G   I +  G++ 
Sbjct: 204 LFMLTAFISMDAPRIVRFFETLFPTQARDDFRRLLHGIDSGLAGVVRGQLTIMLVNGVLT 263

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIE 288
                +  VP   ALG +  I+ ++P    I     + +  L  G +  A     W  + 
Sbjct: 264 LIGLLVIQVPFAFALGALATILYVVPIFGTILSSIPIVLLALTAGGLSKALLALGWILVI 323

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             +    L P ++G   K+  +     LV G RT GL+G  +   + +++  I++     
Sbjct: 324 HALEAYVLNPKIMGDASKIHPVLIVLALVIGERTWGLVGALLAVPVASVVVAIFRFLHRK 383

Query: 349 IKENKEKISS 358
           + E  E+ + 
Sbjct: 384 LAELDERAAQ 393


>gi|15802100|ref|NP_288122.1| putative inner membrane protein [Escherichia coli O157:H7 EDL933]
 gi|15831649|ref|NP_310422.1| inner membrane protein [Escherichia coli O157:H7 str. Sakai]
 gi|168751901|ref|ZP_02776923.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4113]
 gi|168756686|ref|ZP_02781693.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4401]
 gi|168762251|ref|ZP_02787258.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4501]
 gi|168770447|ref|ZP_02795454.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4486]
 gi|168775015|ref|ZP_02800022.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4196]
 gi|168782100|ref|ZP_02807107.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4076]
 gi|168789822|ref|ZP_02814829.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC869]
 gi|168800134|ref|ZP_02825141.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC508]
 gi|195937372|ref|ZP_03082754.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208810488|ref|ZP_03252364.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4206]
 gi|208816562|ref|ZP_03257682.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4045]
 gi|208820705|ref|ZP_03261025.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4042]
 gi|209397418|ref|YP_002270757.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4115]
 gi|217328985|ref|ZP_03445066.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. TW14588]
 gi|254793305|ref|YP_003078142.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261227867|ref|ZP_05942148.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258399|ref|ZP_05950932.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282818|ref|YP_003499636.1| Inner membrane protein YdiK [Escherichia coli O55:H7 str. CB9615]
 gi|12515693|gb|AAG56675.1|AE005392_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361862|dbj|BAB35818.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769380|gb|EDU33224.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4196]
 gi|188014138|gb|EDU52260.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4113]
 gi|189000250|gb|EDU69236.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4076]
 gi|189356127|gb|EDU74546.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4401]
 gi|189360631|gb|EDU79050.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4486]
 gi|189367449|gb|EDU85865.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4501]
 gi|189370582|gb|EDU88998.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC869]
 gi|189377566|gb|EDU95982.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC508]
 gi|208725004|gb|EDZ74711.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4206]
 gi|208730905|gb|EDZ79594.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4045]
 gi|208740828|gb|EDZ88510.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4042]
 gi|209158818|gb|ACI36251.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. EC4115]
 gi|209769108|gb|ACI82866.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769110|gb|ACI82867.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769112|gb|ACI82868.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769114|gb|ACI82869.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|209769116|gb|ACI82870.1| hypothetical protein ECs2395 [Escherichia coli]
 gi|217318332|gb|EEC26759.1| inner membrane protein YdiK [Escherichia coli O157:H7 str. TW14588]
 gi|254592705|gb|ACT72066.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|290762691|gb|ADD56652.1| Inner membrane protein YdiK [Escherichia coli O55:H7 str. CB9615]
 gi|320188374|gb|EFW63036.1| Putative membrane protein [Escherichia coli O157:H7 str. EC1212]
 gi|320641903|gb|EFX11271.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           G5101]
 gi|320647359|gb|EFX16167.1| putative inner membrane protein [Escherichia coli O157:H- str.
           493-89]
 gi|320652653|gb|EFX20922.1| putative inner membrane protein [Escherichia coli O157:H- str. H
           2687]
 gi|320653038|gb|EFX21234.1| putative inner membrane protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658722|gb|EFX26399.1| putative inner membrane protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320668712|gb|EFX35517.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326342053|gb|EGD65834.1| Putative membrane protein [Escherichia coli O157:H7 str. 1044]
 gi|326343605|gb|EGD67367.1| Putative membrane protein [Escherichia coli O157:H7 str. 1125]
          Length = 370

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|113461146|ref|YP_719214.1| permease [Haemophilus somnus 129PT]
 gi|170717731|ref|YP_001784801.1| hypothetical protein HSM_1481 [Haemophilus somnus 2336]
 gi|112823189|gb|ABI25278.1| permease [Haemophilus somnus 129PT]
 gi|168825860|gb|ACA31231.1| protein of unknown function UPF0118 [Haemophilus somnus 2336]
          Length = 350

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 105/346 (30%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +PQ +  + I+F   V++YF     AP+L A+++ +           K +      
Sbjct: 11  RRFTDPQAMALFAILFFGFVAIYFFNSLLAPLLIAIVLAYLLEYPVRLLHEKLKLPRILA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +     + +  V    L      +  +LVS +             L +    +   ++
Sbjct: 71  TSLILGGFIAITFVMTFILIPVLWAQTIKLVSDLPHMFNQLNEWLLSLPENYPELVDYQM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   ++  +          I  +    +          +    + + +FF  +D  
Sbjct: 131 IDAFFISFKNKILGLGESALKLSIASLLNLVT--------LGIYAFLVPLMVFFLLKDKT 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   + +           K+ R + + I +   G  +  +   LV  + +   G+   +
Sbjct: 183 ELINYITNFLP-KNRTLASKVWREMQQQIANYIRGKLLEILIIALVSYAIFLFFGLNYSL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V   +  ++P    +  T     +     G       L +   I   +    L PFL
Sbjct: 242 LLAVAVGLSVLVPYIGAVLVTIPVALVAMFQFGATPTFWYLMVAYVISQILDGNLLVPFL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  L     ++      G  G+F    L  L+  +     
Sbjct: 302 FSEAVNLHPLTIIIAVLIFGGLWGFWGIFFAIPLATLVKAVVSSWP 347


>gi|310767540|gb|ADP12490.1| putative inner membrane protein [Erwinia sp. Ejp617]
          Length = 374

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 129/351 (36%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+  +             + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMINIQRLLWGRRALAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ +FI+P+  L    +     +++ +   +     +    S    G      +  
Sbjct: 70  MTLLLILVFIIPVALLVNSLVENSAPMIAWLGSGHLQMPDLHWLRSTPLVGRKLYSAYHN 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   S  +            F    A  FG     + + +  M++     Y  G  + 
Sbjct: 130 LIAGGGSALLAQVQPYIGRTTGFFFAQAGHFGR----FMMHLGLMLLFSVLLYWRGEQVG 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P    L 
Sbjct: 186 LGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAVSGIPFATILT 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  ++  G  I      I+L   G+    T L +W  +   + D  LRP L+    
Sbjct: 246 VLMILSCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSCVVGTL-DNVLRPMLIRMGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            LP +    G++GG+   G++GLFIGPV++A+   +    +       E  
Sbjct: 305 DLPMILILSGVIGGLVAFGMIGLFIGPVVLAISYRLVSVWVHETPAPHENP 355


>gi|153816489|ref|ZP_01969157.1| hypothetical protein RUMTOR_02742 [Ruminococcus torques ATCC 27756]
 gi|317500769|ref|ZP_07958986.1| hypothetical protein HMPREF1026_00929 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089753|ref|ZP_08338647.1| hypothetical protein HMPREF1025_02230 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846185|gb|EDK23103.1| hypothetical protein RUMTOR_02742 [Ruminococcus torques ATCC 27756]
 gi|316897862|gb|EFV19916.1| hypothetical protein HMPREF1026_00929 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403636|gb|EGG83191.1| hypothetical protein HMPREF1025_02230 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 380

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/369 (15%), Positives = 125/369 (33%), Gaps = 21/369 (5%)

Query: 8   PQGIMRWMIMFIILV-------SLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------- 53
            + I+  +I+ I L         + F  G   P L    I F      S F         
Sbjct: 12  RELIVFTIILLIALWNYKLLFEWIGFAFGIVTPFLIGGGIAFVLNVPMSFFEETLFGNKR 71

Query: 54  ---KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              KK        +   ++++ +  V +L +F       + ++S              +L
Sbjct: 72  VKEKKLAKRLARPLSLVLTIVAVIGVVVLVMFVVIPELAQTVLSLGKTIQAFVPEAQHFL 131

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
            ++         W  +L       + S      NG   +           ++   + +  
Sbjct: 132 EELFTDNSEIRAWLNNLDVDLDKLLDSVIAFFRNGAGNVLNSTVYAIGSIVNGVTTFVIA 191

Query: 171 IIALFFFYRDGFSISQQLDS----LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
            +   +       +  Q+        +  +     K+  +  K   +   G  + A+  G
Sbjct: 192 FVFACYILLQKEKLGVQVKKVMHAFLKEKWEKRCLKVCTLTSKTFSNFLTGQCLEALILG 251

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
            +   A  L  +P  + +GV+ A  A+IP         V  +L++  +   A    +   
Sbjct: 252 SMFFVAMSLFKMPYALLVGVLVAFTALIPIFGAFIGCVVGAFLILMVDPLQALFFVIMFL 311

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   I    + P +VG  + LP +     +  G   MG++G+ I   L++++  +++ES+
Sbjct: 312 VLQQIEGNLIYPKVVGNSVGLPSIWVLAAVTIGGSLMGVVGMLIFIPLVSVVYTLFRESV 371

Query: 347 MAIKENKEK 355
               E K++
Sbjct: 372 YKRLEQKQR 380


>gi|327438419|dbj|BAK14784.1| predicted permease [Solibacillus silvestris StLB046]
          Length = 362

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/357 (13%), Positives = 119/357 (33%), Gaps = 19/357 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSAL-----------IIGFTSWPIYSSFISKKEESST 60
           +  ++  +I+     +   F P++              ++ + S P+      +      
Sbjct: 11  VGILLTLLIIKYFIEIHSIFNPIIIIFTTILVPLLLGGVLYYISEPLQRILEKR-GMPRW 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +   + +  LF   L+ +      ++  LV       +       ++ D       +
Sbjct: 70  GSLITIVLIIAGLFASFLILVGTPIANQVNRLVENAPTIAKDIEEAADFILD-------N 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +     L       I S T    +      ++   F    +   L+++       F  +D
Sbjct: 123 KENIPMLPPQVEEFIASVTNSIQDIAVASSKYLVSFLSGAVTVTLTLVLAPFFFIFMLKD 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               + Q+  +       + KK    +  V+RS   G  +++    +++   Y + G+  
Sbjct: 183 HEKFAPQIYGIFSGERRTWVKKTLEEIDNVLRSYVQGQVLVSFLLAIMMYIGYLIIGLEY 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L +    M MIP   P      ++ + +  N F+   + +   +   +    + P +
Sbjct: 243 SLLLALFAFFMNMIPFIGPWLSLVPAVIVALLNNPFDVIWVGVVTLVAQQVESNLITPNV 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +G  + +  L     ++      G +G+ I      +I VI +      K+ KE  +
Sbjct: 303 MGRSLDIHPLTVISIVLAAGNIAGFIGILIAIPTYCVIKVIVQNIYEERKQIKETAN 359


>gi|310819626|ref|YP_003951984.1| hypothetical protein STAUR_2353 [Stigmatella aurantiaca DW4/3-1]
 gi|309392698|gb|ADO70157.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 363

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 120/345 (34%), Gaps = 2/345 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + +   +I+  I +    +  F      A ++    +  +          +   A +
Sbjct: 5   LVARRVFTGLILLSIFLLGVIVWPFANGFFLAAVLAGALYGTHKRLTRLLRGRNNLSAGL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V+   ++PL     + + E  + V  V    +                   +   +
Sbjct: 65  LCFGVIVALLIPLTGFTAFLISEAADGVRFVSETLRTEGTEGLVNQLPGAVRQPVQNLLE 124

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +  +           ++      R  +        +      M+IA FFF  DG  + 
Sbjct: 125 RFAIEELKLDDKFQQQVSSTGGTAARAVTGVVAATGSFAFQTTMMLIAFFFFLVDGKRLV 184

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + ++S+          +I      V  +  +   + A  + +     Y +  VP      
Sbjct: 185 EWIESVAPLKQGQTI-EILLEFRHVSIAVLVSSVVTAGVQAVAALVGYLITQVPVPFFFA 243

Query: 246 VITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +T  +A+IP           ++ LLI G+ + A  L +WG + + +VD  ++P L    
Sbjct: 244 AVTFFLALIPAIGAAVVCFVAALLLLITGHPWAALFLAIWGVVVVGLVDNIVKPLLAKRG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           + +     FF L+GG+ + G +GL +GP+++A    + +      
Sbjct: 304 MDMHGAIIFFALLGGLASFGTVGLLLGPLIVAFFLALVRIYERDY 348


>gi|257125600|ref|YP_003163714.1| sporulation integral membrane protein YtvI [Leptotrichia buccalis
           C-1013-b]
 gi|257049539|gb|ACV38723.1| sporulation integral membrane protein YtvI [Leptotrichia buccalis
           C-1013-b]
          Length = 394

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 111/337 (32%), Gaps = 7/337 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++ +++  ++ L  F  P   AL     + P+     +K + S     +I+ V+ 
Sbjct: 15  IVYIALILLVVFIVFKLGIFLFPFTIALFFSILARPLTRFLQNKLKLSKKIATIISIVTF 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F   + +     + E+ +L   +   ++    +  W   +         +    +  
Sbjct: 75  LLIFFGIIGWCSLKLVSEIYKLSQNLNSYSEMIQKL--WTDSMAKIYSYLGNFPSGFTKQ 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  I       +  +    +    F        L I   I+A FF   D   I   L+ 
Sbjct: 133 INDAINGFISSGSAKLGTFIKGLINFITSIPTLILYICITILATFFISLDRDKIISFLEQ 192

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL-----AGVPSHVALG 245
                +      I   +  V+ S      I+       L     L       V   + + 
Sbjct: 193 QFPKSWLDKLFNIKTDMFTVLGSYIKAQIILMTICFFELLVCLNLLSFLHFNVAYPLLMS 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I   +  +P     +       +             +   + +  V + L P LV   +
Sbjct: 253 IIICAIDALPILGAGTILIPWAVISFALGDIKLGIALIMIYLIVLSVRQMLEPKLVSQNL 312

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +  L T   +  G +  G++G  IGP++M ++  ++
Sbjct: 313 GVHPLITLISMYSGFKIFGVIGFLIGPIVMIILKNVF 349


>gi|163942329|ref|YP_001647213.1| sporulation integral membrane protein YtvI [Bacillus
           weihenstephanensis KBAB4]
 gi|163864526|gb|ABY45585.1| Sporulation integral membrane protein YtvI [Bacillus
           weihenstephanensis KBAB4]
          Length = 372

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 121/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +   +   +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLMFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 311 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 358


>gi|71279220|ref|YP_271255.1| hypothetical protein CPS_4608 [Colwellia psychrerythraea 34H]
 gi|71144960|gb|AAZ25433.1| putative membrane protein [Colwellia psychrerythraea 34H]
          Length = 370

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 125/349 (35%), Gaps = 5/349 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I    +  IIL     ++ F    + A I+    +P++    +  + +    + I  + 
Sbjct: 21  AIKLAAMAMIILWCFSIIRPFILITIWAAILAVALYPLHEKLTAALKGNKKLASTIVAIV 80

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +  +P + L    +   + + + +             + + P        + +  S 
Sbjct: 81  GISIIAIPSINLSSSAIDSAQHVYTGIEEGTLKIPAADESIKEWPLVGEKLFNFWQDASQ 140

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         +    +    +  G   L + +S+I  ++    F      + Q L 
Sbjct: 141 DIQKVAGQYPEQLKSLSSTLLSAVAGIGGGILQFIVSLIIAVV----FMAKSAPLHQGLS 196

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L   L   +  +        IRS   G+  +A+ + L+ G    +A +P      +   
Sbjct: 197 KLMRRLMNDFGDRTISTTIATIRSVATGVLGVAVIQSLMSGVGLMIADIPGAGIWAIAVL 256

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+A+      +    ++ Y     +   A    ++  I     D  L+P  +G  + +P 
Sbjct: 257 ILAIAQLPPILILGPIAAYYFSVADTTPAIAFLIFSIIV-SASDAFLKPLFLGRGMSIPM 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    G +GG+   G++GLF+G V++AL   +  + +    +++E  + 
Sbjct: 316 LVILLGAIGGMLLSGIIGLFVGAVVLALGYELMMDWLSHTPKSEEDNTE 364


>gi|113477436|ref|YP_723497.1| hypothetical protein Tery_4001 [Trichodesmium erythraeum IMS101]
 gi|110168484|gb|ABG53024.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 368

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 116/335 (34%), Gaps = 9/335 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     ++ A+I+  +  P+ +    +         VI  ++++   I  +L +   
Sbjct: 28  WQVRSLIVLLMIAVILAASISPLVN-LTERIRLPRWLGVVIVYLTLISGLISVVLIIGPQ 86

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              +++ L+ ++ L ++                    +     +        S T    +
Sbjct: 87  VFEQIERLLRQLPLFSKSISDNFENFVSSLTQNPPDWINQLFDT-------KSVTSWVIS 139

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +   +       L   +S+I  +    +   D  ++   +  L    +    +   
Sbjct: 140 SSQQLLLRSYSLTKGVLGSIVSLILALFISGYMVSDSQTLITSIVKLFPQPWDKRLEDQV 199

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFT 263
             V K +     G  I++   GL   +     G+    + LG I A+  +IP   PI   
Sbjct: 200 IPVTKRMGGYIRGRIIVSAILGLATTTGLGFLGLQDFSLGLGAIAAVTNLIPFIGPILGA 259

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ + I    +    + +   I   I    L P LVG  + +  L     ++ GV+ +
Sbjct: 260 VPALIVAIAKGGWLFLWVIILYYIIQNIETYILDPLLVGSSVGVHPLYQLLSVLVGVQLL 319

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++G  I P   A  A + +   +  K   E I S
Sbjct: 320 GIIGALIIPPWFAGAAALVENLYLKPKLEAENIQS 354


>gi|325859632|ref|ZP_08172765.1| putative membrane protein [Prevotella denticola CRIS 18C-A]
 gi|325482912|gb|EGC85912.1| putative membrane protein [Prevotella denticola CRIS 18C-A]
          Length = 359

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/363 (12%), Positives = 118/363 (32%), Gaps = 16/363 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M++T+   + I   +I   ++   +    L G   P   A ++ +  +PI      K   
Sbjct: 1   MKQTITFDKFIRWALIALAVITVGFIINALSGALLPFFIAWLLAYLLYPIVKFVQYKLHV 60

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I    V  +     LF+    + +   L+                 + +   
Sbjct: 61  PGRVLSIIITLAFVAAIITAIFLFIVPPMIDQFDRLMHVANRYLHETTHANNISAMVQRW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  ++   +            +T +                   +   ++    ++ +FF
Sbjct: 121 VMENQFEIEKFLKSPDFTNAIKTAMPKLFS------VIGQTASIVISVIASCITLLYMFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D  ++++    +       +W  +++ V + + +   G  ++++  G +    + + 
Sbjct: 175 ILLDYETLTENWIKIFPKRVRPFWAGLAQDVERELNNYIRGQGLVSLCLGALFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELF 290
             P  + +GV+  I+ ++P     +    +   L       +             A+   
Sbjct: 235 DFPMAIGMGVLIGILNLVPYLHTFALIPTAFLALLKAADTGQNFWIIFGSALAVFAVVQI 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL +   L  LI   W+  +   K
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGSLLGFIGLIVALPLTTLIIAYWQRYVTKEK 354

Query: 351 ENK 353
           E +
Sbjct: 355 EEQ 357


>gi|304390182|ref|ZP_07372136.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|304326664|gb|EFL93908.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 487

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + +IL  +  +   F P+  AL++     P++           T  A+I+ +
Sbjct: 68  RFLAIVAALGLILYGITKVSIVFIPLAIALLLTLLLEPMHLRLQKW-HIPKTLSAIISLL 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +             L+ K        +                +L  + + 
Sbjct: 127 VGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKALAWL--------SDGPLKLDQEQIE 178

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T   T     I   A            +I+  +  LFFF +DG  I   L
Sbjct: 179 KYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTTILISLFCLFFFLKDGRQIWIWL 238

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VI 247
             +          + +      +        ++A+ + + +     + G  S      ++
Sbjct: 239 IRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVDSVFISIGAAVLGAGSMTIPLALL 298

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I A IP    ++      + LL+      A  + +       I    L P L+   + 
Sbjct: 299 IFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLIVILAVQQIESNVLHPMLMSSAVN 358

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L    G+  G    G++G  +   ++A    + 
Sbjct: 359 LHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTVV 394


>gi|168822229|ref|ZP_02834229.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197247934|ref|YP_002146674.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197211637|gb|ACH49034.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205341339|gb|EDZ28103.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086155|emb|CBY95929.1| UPF0118 membrane protein BU123 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 372

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|146296898|ref|YP_001180669.1| hypothetical protein Csac_1893 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410474|gb|ABP67478.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 351

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 117/342 (34%), Gaps = 10/342 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +++   +   ++    +    +++        P + AL + +   P+      K + S  
Sbjct: 7   LKKYFCDFILLIFIAFVIYFFINIKTFWPILLPFIIALFLSYLLKPVVDFLEVKIK-SRD 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +++ +    + I+  ++     + EMK+L   +           + +          
Sbjct: 66  ISILLSFIFTFSIAILIFVYFIPLFITEMKQLTQNIPEYISVFNKWFKDVDSKLSNKLNI 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L            + S +         +               L  + + I  F+  +D
Sbjct: 126 DL---------EEILRSNSINFEAISKQVLTTLLNILKNLYSNILYYLLIPIISFYILKD 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I + +  +    +      I   + KV+        + AI  G++    + +  V  
Sbjct: 177 WSKIVKWIKWILPEKYRKEGISIFNDINKVLHQYIRAQLLDAIIIGILSFLGFSILSVRY 236

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG+IT I  +IP   PI  +  ++ + +  +   A  + ++  +   I    + P +
Sbjct: 237 AALLGIITGIGNLIPYFGPIFSSIPAVVIALSDSYIKAIVVVVFLIVLQQIDSFLISPRI 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +G  + L  L     L+   +  G + +F    L A+I +I+
Sbjct: 297 IGSRLGLHPLTIIIVLIISNKLFGFISMFFAIPLAAVIKIIF 338


>gi|307700600|ref|ZP_07637632.1| putative membrane protein [Mobiluncus mulieris FB024-16]
 gi|307614245|gb|EFN93482.1| putative membrane protein [Mobiluncus mulieris FB024-16]
          Length = 458

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 99/336 (29%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++  +   +  +K    PV  AL++     P+       +  +    A ++ +
Sbjct: 97  RLIAIVIVLGGVTWGISKVKVAIVPVAVALLLTLLLEPLNGRLQKWRFPN-ALSAAVSLI 155

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      +             LV K        +                 L ++ + 
Sbjct: 156 VGISALTAAIWVSVSQLASGAPALVRKAGGGFGKLMAWL--------SDEPLGLNSEDID 207

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H           L       I   A       L+   +I   +  LFFF +DG  I    
Sbjct: 208 HYTKALSRQLGGLLEKYSSSIASSAWSVTSSVLNLVAAIFISVFCLFFFLKDGRRIWVWF 267

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VI 247
             L    F     +        ++       ++A  + + +       G  S      ++
Sbjct: 268 MRLLPVPFREPVHEAGIRGWITLKGYIKAQAMVAGVDAVFISIGAAFLGAGSMTIPLALL 327

Query: 248 TAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP    + +     + +L+   +  A  + +       I    L+P L+   + 
Sbjct: 328 IFLASFIPIVGAVSTGAIAVLVILLDQGLVKAIIMLVVILAVQQIESNVLQPLLMSNAVN 387

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     +  G     ++G  +   ++A +  + 
Sbjct: 388 IHPLVVLLAITVGGYFASIIGALLAVPIVAFLNTVV 423


>gi|296102735|ref|YP_003612881.1| putative inner membrane protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057194|gb|ADF61932.1| putative inner membrane protein [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 371

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 131/350 (37%), Gaps = 6/350 (1%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + + + I+  L+ ++ F      A  +   +WP+            
Sbjct: 4   LRQPRDVAQILLSVLFLALMIIACLWIVQPFILGFAWAATVVVATWPVLLRLQKLLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               ++ T+ +  LFI+P+  L    +     ++  V   +     +    S    G   
Sbjct: 64  GLAVLVMTLLLFLLFIIPIALLVNSLVDSSGPVIRAVTSGDLTLPDLAWLNSIPVVGAKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L    S  +            +    A+  G     + +    M++     Y 
Sbjct: 124 YSGWHSLLEMGGSALMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLVFSALLYW 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GVP
Sbjct: 180 RGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAVLGGIGLAISGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  +  +   G  +      I+L   G+    T L +W  +    +D  +RP 
Sbjct: 240 YATVFTVVMLMTCLAQLGPLLVLVPSIIWLYWTGDTTWGTVLLVWSCVV-GTMDNVIRPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 299 LIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEV 348


>gi|320006939|gb|ADW01789.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 371

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 113/350 (32%), Gaps = 14/350 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++  + L  L  +     P++  L++   +WP+      ++       A   TV
Sbjct: 23  ELLLVLVMTAVALWLLGRMWSVVWPLVVGLLLTTLTWPLTRFL-RRRGWPPALAASTVTV 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  +      +  EL   VV   Q                WAS        
Sbjct: 82  LFLLVAGGAVALIAVPVASQSGELADGVVEGIQRLRE------------WASGPPLNIGD 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    S T    + +  +           ++  ++ +  +  +FF  +DG      L
Sbjct: 130 DQITGAFDSATARVQDSVGSMVTTVVTGVSTVVNGVVTAVLAVFLMFFMLKDGPRFLPWL 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++      +         + + + +++G   W+ GVP  + L V+T
Sbjct: 190 ARQLPGRLATDVPTVAARGWDTLGEFVRSQAYVGLLDAVLIGLGLWIVGVPLVLPLAVLT 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + +A  +     +   +     +P +    + L
Sbjct: 250 FVSAFVPIVGALFAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPMIQSRGLGL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                   +  G    G++G  +     ALIAV+W      + E  E+  
Sbjct: 310 HAAVVLLAVTLGGSLAGIVGSLLAVPAAALIAVVWNYVREQLVEPGEEPE 359


>gi|56751011|ref|YP_171712.1| hypothetical protein syc1002_c [Synechococcus elongatus PCC 6301]
 gi|81299329|ref|YP_399537.1| hypothetical protein Synpcc7942_0518 [Synechococcus elongatus PCC
           7942]
 gi|56685970|dbj|BAD79192.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168210|gb|ABB56550.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 387

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 105/341 (30%), Gaps = 9/341 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +      L+ L+     + +A+++      +      +   S      +  + +     +
Sbjct: 12  ILAAAYILWQLRQVMLLLFAAVVLAVIINHLARQLQQRLRWSRRTSLAVTLLGITIGGGL 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW-----LSDIPGGMWASELWTKHLSHPQ 131
            +  L    +++ +EL+          +          +  +PG        +   S  +
Sbjct: 72  LIALLLPPLLVQFQELLRLAPQGFAKLLTWVEERLVDVVKILPGFSDDRSARSFVDSTIR 131

Query: 132 SLKI----LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            L             +  +  + R         L     ++ +I+ +     +  +  Q 
Sbjct: 132 DLIQGFGDRRNWSSFSQQLGPLARNFLSIFNNTLAAAAQLLLVIVLMLMMLSNPQAYRQT 191

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +     ++       +   FLG+ I +    ++      + GV   +   +I
Sbjct: 192 FLRLLPSFYRRRADEVLSACEISLSDWFLGILISSSAIAILSWLGLVILGVKLALVNAII 251

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              + +IP   P       I +++    + A  + +   I   +    L P ++   + L
Sbjct: 252 AGFLNLIPNLGPTLSAVFPISIVLLDEPWKAWVVLVIYIIIQQLESYWLTPTIMARQVSL 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               T    +      GL GL +   L  +  V +++ ++ 
Sbjct: 312 LPALTLIAQIVFASIFGLAGLILALPLAVVAKVFFEQVLIH 352


>gi|157144583|ref|YP_001451902.1| hypothetical protein CKO_00303 [Citrobacter koseri ATCC BAA-895]
 gi|157081788|gb|ABV11466.1| hypothetical protein CKO_00303 [Citrobacter koseri ATCC BAA-895]
          Length = 353

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 105/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +          +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVAIVLAYLLEWPTVRLEA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLIVFVGILLLMAFVVMPVAWQQGIYLIRDMPGMLNKLSDYAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLTLGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLIKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWMEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   I   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDG 348


>gi|269977634|ref|ZP_06184601.1| putative domain of unknown function [Mobiluncus mulieris 28-1]
 gi|269934237|gb|EEZ90804.1| putative domain of unknown function [Mobiluncus mulieris 28-1]
          Length = 504

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 100/335 (29%), Gaps = 17/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +     F ++  L+ +   F P   AL +  T  P+    IS+ +  +   A++  V
Sbjct: 102 RYALALAGTFAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLISR-KVPAALAALLNIV 160

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + +     +         EL                 L  +           +   
Sbjct: 161 LMFAVMLGVTGMIAGALTAVTTELPRYQRKFQILYQDSIHLLERL---------GDRFNI 211

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+   ++         +    A+  G          +  I  +          ++  
Sbjct: 212 DMSSVTSPAQRVDLGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELA 271

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +        R   +  R  FL  T    G  ++     ++  VPS +  G++ 
Sbjct: 272 T------YAPGLAISLRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILA 325

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       + +L+   +  A  + +   +   +V   ++P   G  + L
Sbjct: 326 FVANYIPAVGFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGL 385

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +F  L+     +G LG  +   +   I  I+
Sbjct: 386 NPTISFLSLMVWSAVLGPLGAVVSVPMTLFIKAIF 420


>gi|16764714|ref|NP_460329.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167551672|ref|ZP_02345426.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167994384|ref|ZP_02575476.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168263810|ref|ZP_02685783.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463230|ref|ZP_02697161.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443331|ref|YP_002040620.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447864|ref|YP_002045370.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194734868|ref|YP_002114380.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197265600|ref|ZP_03165674.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198241856|ref|YP_002215762.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389294|ref|ZP_03215905.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207857130|ref|YP_002243781.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224584124|ref|YP_002637922.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|16419883|gb|AAL20288.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194401994|gb|ACF62216.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194406168|gb|ACF66387.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194710370|gb|ACF89591.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195634155|gb|EDX52507.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197243855|gb|EDY26475.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197936372|gb|ACH73705.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199601739|gb|EDZ00285.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205323653|gb|EDZ11492.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205327740|gb|EDZ14504.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205347570|gb|EDZ34201.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708933|emb|CAR33263.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|224468651|gb|ACN46481.1| hypothetical protein SPC_2365 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261246572|emb|CBG24382.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267993250|gb|ACY88135.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157899|emb|CBW17394.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312912349|dbj|BAJ36323.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223992|gb|EFX49055.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616748|gb|EFY13657.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619992|gb|EFY16865.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622303|gb|EFY19148.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322627826|gb|EFY24616.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633075|gb|EFY29818.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636679|gb|EFY33382.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641296|gb|EFY37937.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647390|gb|EFY43882.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650226|gb|EFY46640.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655800|gb|EFY52102.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660126|gb|EFY56365.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665308|gb|EFY61496.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669565|gb|EFY65713.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673491|gb|EFY69593.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677419|gb|EFY73483.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322679918|gb|EFY75957.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687390|gb|EFY83362.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323129634|gb|ADX17064.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323192507|gb|EFZ77737.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198638|gb|EFZ83739.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203119|gb|EFZ88150.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208684|gb|EFZ93622.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213802|gb|EFZ98580.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217661|gb|EGA02376.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219072|gb|EGA03577.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227199|gb|EGA11372.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229463|gb|EGA13586.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323232686|gb|EGA16782.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323240276|gb|EGA24320.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242736|gb|EGA26757.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245947|gb|EGA29935.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252809|gb|EGA36646.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256701|gb|EGA40430.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323267143|gb|EGA50628.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271533|gb|EGA54954.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623509|gb|EGE29854.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 372

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|313898479|ref|ZP_07832016.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312956861|gb|EFR38492.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 403

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 106/351 (30%), Gaps = 14/351 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----------EESSTFLAVIATVSVM 71
              F+   F  +L A++  +                        ++      ++  +  +
Sbjct: 40  GFDFVLSVFKSLLYAIVFAYVLNLPMKHIEGFLLRHTKQDSFLQKKKRVISMILTFLLAL 99

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE---LWTKHLS 128
            L I+    +    +  +  L+  +     + +     +       +  E      + + 
Sbjct: 100 ILIILIGSIILPSIIDSLISLMENLTSFFTNIVKNIDEVLAYFHIDYRIENITQVEQFIQ 159

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P    + +   L +     I   A+ F   F       +F +  L         + +  
Sbjct: 160 MPWEKIVTNVINLLSGSASGILSSATGFVSSFAVGFTGFMFSLYLLSGKENFIRQMRKVT 219

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +   +       + +  V ++  S   G    A    ++      L   P    +  + 
Sbjct: 220 AAFLGYGNSKIVFRYAARVNRIFSSFIGGQLTEACILWVLYYIFMRLFQFPYPELICTLI 279

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A+ +M+P    +   +V   +++  +   +    ++  I  +  D  + P +VG  + LP
Sbjct: 280 AVCSMVPVFGSMFAMSVGAIMMLSKDPLQSVWFIIFYQILSYFEDNVIYPRVVGNSVGLP 339

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L     +       G+ G+ +     A + V + E +      +  I + 
Sbjct: 340 GLWVLLSIFVFGDLWGVFGMIMAVPTTACLYVFFTEYVNHRLRKQRLIVTE 390


>gi|91793712|ref|YP_563363.1| hypothetical protein Sden_2360 [Shewanella denitrificans OS217]
 gi|91715714|gb|ABE55640.1| protein of unknown function UPF0118 [Shewanella denitrificans
           OS217]
          Length = 406

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 103/333 (30%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    + +IL  +        P + +  +     P        +         +A +
Sbjct: 12  RTTVILAALVVILAGIKAASPIVVPFVLSAFLAVICNPAIVLMTRCRLPK-----WLAVM 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E  +++ +  Q  I    W+ +   G        K L 
Sbjct: 67  LLMAFIVLMGLWLTSLVGRSVNEFSTQIPVYRQQLIEQFSWIIERLQGFNIQISQQKVLD 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   +     D     +Q+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKVHLAMDDPDMRLKQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++    ++G    + GV   +   V+ 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATAFIVGLGLSIIGVDYALLWAVLA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L +       A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLALIQLGPAAAGGTALLYLGTNMVMGNVVEPKFMGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             L  F  L+     +G +G+ +   L  ++ +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKI 323


>gi|118578847|ref|YP_900097.1| hypothetical protein Ppro_0405 [Pelobacter propionicus DSM 2379]
 gi|118501557|gb|ABK98039.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 374

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/356 (19%), Positives = 138/356 (38%), Gaps = 7/356 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    +    I  +I  S + L+ F   ++ A +I  T+WP+  S               
Sbjct: 10  IARTTLAVLFIAILISASFWVLRPFLTALVWATMIVITTWPLMLSLQKCLWGKRALAVAA 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG--GMWASELW 123
            + +++ L ++PL       +    ++V        +    P    +     G   +E W
Sbjct: 70  MSAALLLLLVIPLTLAIVSIVERSDDIVGWARSLAMYTPAPPPAWVEQVPVIGPKLAERW 129

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +                 + +I        M+ + + L++I   +     Y  G  
Sbjct: 130 RTLATIDPVELSARLAPHVKAIVGWIVAQTGSVMMMVVQFLLTVIISAV----LYASGEK 185

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +  +      L     +  S +  K IR   LG+ + A+ + L+ G    L+GVP+   
Sbjct: 186 AAMGVRLFAHRLGGKSGEDASILAAKAIRGVALGVVVTALAQALLGGIGLALSGVPAATL 245

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  +  I+ +   G  +      I+L  K      + + +W A+ +  +D  +RP L+  
Sbjct: 246 LTAVMFILCVAQLGPSLVLIPAVIWLFWKDQTMWGSIMVVW-AVVVGTMDNFIRPILIKK 304

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              LP L  F G++GG+   G++GLFIGPV++A+   +    +M  +  +E  + +
Sbjct: 305 GADLPLLLIFAGVIGGLIAFGVIGLFIGPVMLAVTYTLLVAWVMGPEPTEEAAAGS 360


>gi|283786108|ref|YP_003365973.1| putative permease [Citrobacter rodentium ICC168]
 gi|282949562|emb|CBG89178.1| putative permease [Citrobacter rodentium ICC168]
          Length = 354

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 110/354 (31%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L ++++ +          +    S   
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVSIVLAYLLEWPTVRLEA-IGCSRRL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + ++  L +      +   L+  +             L      +  + 
Sbjct: 69  ATSVVLIVFVGILLLMALVVMPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLTLGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   V + L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTLPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +      A   ++
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDAQIADE 353


>gi|192360496|ref|YP_001981496.1| membrane protein, PerM family [Cellvibrio japonicus Ueda107]
 gi|190686661|gb|ACE84339.1| membrane protein, PerM family [Cellvibrio japonicus Ueda107]
          Length = 401

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 117/353 (33%), Gaps = 12/353 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +     N + ++  +++   L+++  +    AP+++A++I F    + +           
Sbjct: 44  LDRYFSNEEALLLLLLLAAALLAILTMGQVLAPMMAAMVIAFLMQGMVTRLRQW-GMGHN 102

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA V ++      LLF+      ++    +++      G  +   L +      + 
Sbjct: 103 LAVTIAFVVLLVSLGALLLFIMPIMWNQLVRFFNELPRMVIEGQELLMGLPERYPQFLSE 162

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +  +   +          +     +  F+     + +   + +I + I +FFF +D
Sbjct: 163 RQLEQLFASMTAEI--------SGMGQRVLSFSVTNIPMLIGLMIYLILVPILVFFFLKD 214

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I         H       K+ + + +   +   G  I  +  G V   A+   G+  
Sbjct: 215 SSLIMAWCARFLPH-HRPVMAKVWQEMNQQFANYVRGKVIEIVIVGAVSYVAFICLGLNY 273

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRP 298
              L +   +  +IP       T     +      ++A    L L   I   +    L P
Sbjct: 274 AALLAIAVGLSVVIPFIGAAVVTLPVALVAYFQWGWSAPFIYLMLAYTIIQVLDGNVLVP 333

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L    + L  +     ++      G  G+F    L  L+  I     +A++E
Sbjct: 334 LLFSEAVNLHPVAIILAVLVFGGLWGFWGVFFAIPLATLVKAILYAWPIAVQE 386


>gi|320175148|gb|EFW50259.1| putative membrane protein [Shigella dysenteriae CDC 74-1112]
          Length = 370

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQHRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|312966841|ref|ZP_07781059.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|312288305|gb|EFR16207.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 370

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLKTIPVIGTKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|15602996|ref|NP_246068.1| hypothetical protein PM1131 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721477|gb|AAK03215.1| PerM [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 354

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/352 (13%), Positives = 106/352 (30%), Gaps = 11/352 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +PQ +  + I+    +S+YF     AP+L A+++ +           K +       
Sbjct: 12  RFSDPQAMGLFAILLFGFISIYFFSHLIAPLLIAIVLAYLLEWPIRVLTEKLKFPRLLST 71

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            I     + L +V +L        +   LV+ +             L +    +   +  
Sbjct: 72  AIIFGGFLGLILVIVLVFIPTLWTQTLNLVTDLPHMFNKLNEWLLSLPEHYPELVDYQTI 131

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              LS  +S  +           +   +F+    +  +   +    + + +FF  +D   
Sbjct: 132 DSVLSTVRSKIL--------GFGESALKFSLTSLLSLVTLGIYAFLVPLMVFFLLKDKTE 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +              + + + + I +   G     I    V  + +    +   + 
Sbjct: 184 LIASVSRFLP-RNRTLASSVWKEMQQQIANYIRGKLFEIIIVTAVTYAIFIFFNLNYSLL 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L V   +  ++P    +  T       +   G       +     I   +    L PFL 
Sbjct: 243 LAVAVGLSVLVPYIGAVLVTIPIALVAVAQFGITPTFWYIITAYVISQILDGNLLVPFLF 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              + L  L     ++      G  G+F    L  L+  +        ++ +
Sbjct: 303 SEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIPLATLVKAVVNAWPSTEQDTR 354


>gi|78357491|ref|YP_388940.1| hypothetical protein Dde_2448 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219896|gb|ABB39245.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 415

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/325 (16%), Positives = 119/325 (36%), Gaps = 3/325 (0%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYYGML 87
            F    + A+++    +P+Y+  + +      T  ++   + +     +PL       + 
Sbjct: 70  PFLHTFIMAIVLSAICYPLYNKVLQRTGHRSRTLASLAVLLFLCICIALPLFIFVTGLIP 129

Query: 88  EMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           +  + V+ V     H           +   +         +   +               
Sbjct: 130 QAVQSVTAVNNWINHTDFDQLFGAGRLEQYLAWVHQHLPFIDASKIDLRAEFISFSRRMG 189

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +      L      + M++ +FF  +DG  + Q +  +   L       I   
Sbjct: 190 QTLLEGGTYLLGNALTLFFQFLLMLLIVFFMLKDGKKMLQVVKYMCP-LHEDQEDAILLN 248

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +  V +S  +G  ++A  +GL  G    L G+P+     V+     +   G  + +    
Sbjct: 249 LRSVSKSVLVGGLLVAALQGLAGGIGLALVGIPALFWGTVMGFASLVPVVGTGLVWMPAC 308

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +YLL+ G   ++  LF+W A+ +  +D  LRP+ + G   +     F  ++GG++  G+ 
Sbjct: 309 LYLLLMGQWQSSLFLFVWSAVGVASIDSFLRPYFMRGSAGMSTFFIFMSIMGGIKVFGMA 368

Query: 327 GLFIGPVLMALIAVIWKESIMAIKE 351
           G+  GP+++    V+ +       E
Sbjct: 369 GVLYGPLILGFTMVMLRLYGEEFSE 393


>gi|86605937|ref|YP_474700.1| hypothetical protein CYA_1254 [Synechococcus sp. JA-3-3Ab]
 gi|86554479|gb|ABC99437.1| putative membrane protein [Synechococcus sp. JA-3-3Ab]
          Length = 412

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 108/305 (35%), Gaps = 6/305 (1%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +          +  +S +       L +    + + + L++++    +    +    
Sbjct: 52  LAERMRIPRWLGV-VVYLSFIAGIAGLALLMGPTVVTQTQRLLARLPSYLERLQLLADTW 110

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                G+  + L   +        +             +   +  F    L   L+++  
Sbjct: 111 IADLAGVDPAALDYLNQLLDPQSLMNW----AVRSGQQLLVQSFDFTRGLLGGLLTVVLT 166

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +    +    G  + Q L  L  + +     +  + + + +     G  +++   G+++ 
Sbjct: 167 LFISGYMLVSGSDLVQGLVELFPYPWNERLAQQVQPMAQRMGGYIQGRVLVSAILGVMIA 226

Query: 231 SAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
            +    G+    +ALGVI     +IP   P+  +  ++ + I    +    + +      
Sbjct: 227 VSLRFLGLSEFALALGVIAGFTNLIPFIGPVLGSLPALVVAIVQGGWTFLWVLILYVAVQ 286

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L P LVG  +++  L     ++GG + +G++G  I P  +A +AV+ +   +  
Sbjct: 287 NLETYVLDPLLVGSSVRVKPLYQLLAVLGGTQLLGIVGAVIAPPWVAGMAVLLENLYLKP 346

Query: 350 KENKE 354
           K+  E
Sbjct: 347 KQEAE 351


>gi|259908561|ref|YP_002648917.1| putative inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224964183|emb|CAX55690.1| conserved uncharacterized protein [Erwinia pyrifoliae Ep1/96]
 gi|283478527|emb|CAY74443.1| UPF0118 inner membrane protein ydiK [Erwinia pyrifoliae DSM 12163]
          Length = 374

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 129/351 (36%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+  +             + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMINIQRLLWGRRALAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ +FI+P+  L    +     +++ +   +     +    S    G      +  
Sbjct: 70  MTLLLILVFIIPVALLVNSLIENSAPMIAWLGSGHLQMPDLHWLRSTPLVGRKLYSAYHN 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   S  +            F    A  FG     + + +  M++     Y  G  + 
Sbjct: 130 LIAGGGSALLAQVQPYIGRTTGFFFAQAGHFGR----FMMHLGLMLLFSVLLYWRGEQVG 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L          +  + IR+  LG+ + A+ +G++ G    ++G+P    L 
Sbjct: 186 LGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQGVLGGIGLAVSGIPFATILT 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  ++  G  I      I+L   G+    T L +W  +   + D  LRP L+    
Sbjct: 246 VLMILSCLVQLGPLIVLVPAIIWLYWSGDTTWGTVLLIWSCVVGTL-DNVLRPMLIRMGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            LP +    G++GG+   G++GLFIGPV++A+   +    +       E  
Sbjct: 305 DLPMILILSGVIGGLVAFGMIGLFIGPVVLAISYRLVSVWVHETPAPHENP 355


>gi|110634425|ref|YP_674633.1| hypothetical protein Meso_2075 [Mesorhizobium sp. BNC1]
 gi|110285409|gb|ABG63468.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 385

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 116/339 (34%), Gaps = 12/339 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + + + +  LYF + FF PV+ A ++  T  PI               A ++  
Sbjct: 27  RYLLVGVFLILFVAGLYFARDFFMPVVIAFLMAMTLTPIVRFL-----GKRGIPAALSAT 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++      +  L Y     + ELV                L      +  +    K  +
Sbjct: 82  LLVFASWSAIGMLGYAMSGPVIELVDDAPRIGSELRQRVAELRRPLEDVMEASEQIKEAT 141

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  +    +       I R A     +     ++++  +  L         I Q  
Sbjct: 142 EAADEPGVQRVVIAQ--PGIISRAAGNLLSVATTVGITLVLTLFLLASGTLFYEKIVQSF 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L          +I   V + +    L + +I    G+ +G   W  GVP+ +  GV  
Sbjct: 200 GAL---SDKKRALRIVFDVEREVSRYLLTIALINSALGVTVGIGLWGLGVPNALVWGVAA 256

Query: 249 AIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++  +P    I        I L+   +++ A    L+ A+   +  + + P ++G  ++
Sbjct: 257 AVLNFLPYVGAIVTFGLVAIISLVTFESLYFAMLPPLYVALCNTLEGQFVTPLVLGRRLE 316

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  +  F  +       G++G  I   L+ ++ V     
Sbjct: 317 LNAVAIFIAVAFWSWLWGIVGALIAVPLLVVVKVFCDHF 355


>gi|253579961|ref|ZP_04857229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848960|gb|EES76922.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 382

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 126/352 (35%), Gaps = 14/352 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---------TFLAVIATVS 69
           I++ ++  L GF  P +    I F                +              ++ V 
Sbjct: 30  IVISTVRVLLGFLFPFIIGFGIAFILNIPMKFIEHHLFGKALKQEKKTAQKLARPVSLVL 89

Query: 70  VMCLFIVPLLFLFYYGMLEM-KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +C  I  ++ +    + E+    V+      ++     +W+ ++ G       W + L 
Sbjct: 90  SICFVICIIVIVMLVVVPELGATFVNIAKKIEENIPVFQKWIDNVFGNNPEVVKWAQSLD 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S   +  NG++ I        M  L   +++    +   +       + QQ+
Sbjct: 150 IEPGKIIDSVLGVLKNGVNNIVSSTVSITMGLLTTAMNVSIGFVFACYVLLQKEKLLQQI 209

Query: 189 DS----LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 +       Y   +  +  ++  +   G  I A+  G +   +  +   P  + +
Sbjct: 210 KKAMYAMFPEKPVRYLAHVWNLANRIFSNFITGQCIEAVILGSMFFVSMTILHFPYAMLV 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+ +  A+IP    I    V+ +L++  +   A        I   I    + P +VGG 
Sbjct: 270 GVLISFTALIPLFGGIIGCWVAFFLILMISPVKAVLFLGLFLILQQIEGNLIYPHVVGGS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           + LP +     +  G   MG+ G+ I    +++I  +++E + A  E K+ +
Sbjct: 330 VGLPSIWVLVAVTLGGSLMGIAGMLIFIPTVSVIYTLFREWVYARLEKKQLV 381


>gi|62179954|ref|YP_216371.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62127587|gb|AAX65290.1| putative permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322714421|gb|EFZ05992.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 372

 Score =  123 bits (308), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + +  II+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIIIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|291485556|dbj|BAI86631.1| hypothetical protein BSNT_04582 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 388

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 113/333 (33%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    P++   I+ +   P+      ++     +  ++  + V+ L  + 
Sbjct: 42  FIFTPIIVLLKTISLPIILTGIVFYLLNPVVDFLE-RRRIRRIYSILLLYLLVIGLITIT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ +  +   ++  L+  +         +    +    G        +  +   S     
Sbjct: 101 IVSIIPFLKEQIMSLIDNIPRYV----DIVENQTKQLIGSNFVNQAQQTTNINISDLATK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +      ++        F     +  +SI+ +   LF+  +DG  +   +         
Sbjct: 157 VSDQAATIVNSTFTGVGNFIGALTEIIISIVTVPFILFYLLKDGKKLPVYILKFVPTQLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTVLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + I  +      L +   I   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIAIVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+  VI        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVAKVITTHLFDWFK 369


>gi|225026409|ref|ZP_03715601.1| hypothetical protein EUBHAL_00658 [Eubacterium hallii DSM 3353]
 gi|224956246|gb|EEG37455.1| hypothetical protein EUBHAL_00658 [Eubacterium hallii DSM 3353]
          Length = 392

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/370 (14%), Positives = 121/370 (32%), Gaps = 24/370 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFIS--- 53
             + ++      ++   L                  P++  LI+ F        F     
Sbjct: 22  TKKSLLLITFGVVLFALLMHFSEVIKILQRGVSLTLPIMVGLILAFVLNVPMKMFERLFA 81

Query: 54  ---------KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                    KK   ++         ++ L  +         +  ++ + +  +      +
Sbjct: 82  KLKKKYPQLKKIPVTSLSLFATLACIVLLIGIVYTMFVPGLVASVRSIYNVFMENMPKWL 141

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              R  S+     W S   T    +    +I        N +  +    +    + ++  
Sbjct: 142 SWLR--SNGMDTAWISREVTSWDFNKLLTQITGNVGNVGNALGKVVDATTSAFGVAMNVM 199

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I  I  L           + + +            IS +V +     F G  I A+ 
Sbjct: 200 MGFIIAIYVLLSKVSLTRQCKKMIYAHLSKNHADKICYISSLVNETYSKFFSGQCIEAVI 259

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            GL++  A+ +  +P    + V+TAI++ IP     +   +   L++  + +      + 
Sbjct: 260 LGLLIFIAFTVFRLPYANLIAVLTAILSFIPYIGAFASCFIGALLIVMVDPWKGLLSIVV 319

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +  FI ++ + P +VGG + L  L T    + G    G +G+     + A++ V+ K+
Sbjct: 320 YQVVQFIENQFIYPRVVGGSVGLAPLWTLSAALIGGNLFGAIGMIFAIPVTAVLYVLLKD 379

Query: 345 SIMAIKENKE 354
                 + K+
Sbjct: 380 DANRRLQRKK 389


>gi|205374541|ref|ZP_03227337.1| hypothetical protein Bcoam_15781 [Bacillus coahuilensis m4-4]
          Length = 372

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 116/343 (33%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++ + ++++Y++  +  P + A+ + +   PI +    +          ++ +
Sbjct: 11  RAIFLAVLIVLSVIAVYYIGKYTYPFIIAIGLAYILNPIVNFLEKRTRLPRGLAVFVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++  F   +  L    +   + L + +       +        +       +L     S
Sbjct: 71  LIVSAFAGLITLLIAEIVNGAEYLSNVLPTHIDSFVTYIEDFVAMQIIPIYEQLSVMFNS 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                +      ++  G          I    +      +   +    ++F+ +A FF  
Sbjct: 131 LDTGQQDSIMDSIQNTGTAIATSMTDFIQRFFQALPNAVLWIPNTATVLVFIFLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   + ++   +      ++ + I + + K +         +     L++     +  V
Sbjct: 191 KDWERLLEKTIHILPIKAQSHSRTIVQDLKKALFGFIQAQLTLITFTTLIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + ++  ++ ++P     +     +                     + I  + + P
Sbjct: 251 EYAITIALVAGLVDLLPYLGTAAVIIPWMIYEFLTGDIRLGIGLAILYGVVTIQRQLMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I +  L T   L  G + +G LGL +GPV + LI  +
Sbjct: 311 KVLSSSIGIDPLATLVALFVGFKLVGFLGLILGPVTLVLITAL 353


>gi|167037464|ref|YP_001665042.1| hypothetical protein Teth39_1051 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115878|ref|YP_004186037.1| hypothetical protein Thebr_1078 [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856298|gb|ABY94706.1| protein of unknown function UPF0118 [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928969|gb|ADV79654.1| protein of unknown function UPF0118 [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 341

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 121/350 (34%), Gaps = 16/350 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKG------FFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +  + ++I+    +  +F+K         +P   + +I +   P+   F SK   S
Sbjct: 1   MQIKKTYLLFLIIGATGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPMVKFFNSK-GFS 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++  + V    +    ++    + E   L+  +    +    +   L        
Sbjct: 60  IFLSILLVFLIVASGILFFSFYIVPLLINEFIALLQMIPFYAEEIQKLLIQLKFNYLSYL 119

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++      +  SL       + +     I           L   + II + I  F+F 
Sbjct: 120 PPQVEKVLDKNLGSLNNAFTYHIDSAFKSVIT---------ILKDAVDIIIIPIVTFYFL 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     ++++ +    +   +  I + + K++         I+    +       L  V
Sbjct: 171 KDKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLSLIKV 230

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +GV+  I+ +IP   PI     ++ + +  ++       +   +   + +  + P
Sbjct: 231 KYAFLIGVLAGILNIIPYVGPILSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFITP 290

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            ++   + L  +   F L+ G    G+ GL +   ++A+I  I  E  + 
Sbjct: 291 KIMSDSVGLHPVTVIFSLIAGGELFGIWGLLLSVPIVAMIKAIVIEIFIE 340


>gi|330829202|ref|YP_004392154.1| Permease PerM [Aeromonas veronii B565]
 gi|328804338|gb|AEB49537.1| Permease PerM [Aeromonas veronii B565]
          Length = 356

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 105/349 (30%), Gaps = 12/349 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +P  +  ++++      ++      AP+L AL++ +      +    K   S T   
Sbjct: 12  RFSDPDAVTLFLLLVFCFTIIWLFGDLLAPLLVALVMAYLLEWPVARLQ-KAGLSRTLAT 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +  + + +  LL L    + +   L  +      H     R L D    +    L 
Sbjct: 71  SVILILFIAVAVASLLGLIPTLVSQGINLAKEAPAMLTHAQDYVRTLPDKYPELIDVSLV 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              + + +   +     L +  +  +               + +I + + +FF  +D   
Sbjct: 131 ETVIDNIRQRILSGGEHLVSASLSSLVNVV--------AIMIYLILVPLMVFFMLKDKRV 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L             ++   +   I +   G  I  +  G+     + L G+   V 
Sbjct: 183 LMGSLRRFLP-RNRTLVNRVWVEMNNQIINYIRGKVIEILIVGIATYVPFALMGLRYSVL 241

Query: 244 LGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L V      +IP       T     + L   G       L +   +   +    L P L 
Sbjct: 242 LAVAVGFSVLIPYIGAAVVTVPVAMVALFQWGLTPEFAWLMVAYLVIQALDGNLLVPVLF 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              + L  +     ++      G  G+F    L  L+  +        +
Sbjct: 302 SEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVINAWPKREE 350


>gi|169631595|ref|YP_001705244.1| hypothetical protein MAB_4521c [Mycobacterium abscessus ATCC 19977]
 gi|169243562|emb|CAM64590.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 399

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 42/351 (11%), Positives = 107/351 (30%), Gaps = 14/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++       +L   + LK    P+L AL+      P  +      +   +   V+  +
Sbjct: 23  RLLVLLAFGLTVLWLFWHLKTITIPLLLALMGSALLVPTVNFLQRH-KIPRSLAVVVVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +     +  L F+    +  + +L +++  + +                WA         
Sbjct: 82  TGTAAIVGILTFVVDQFIKGLPDLSAQLTNSIESLKN------------WAIHSRFHISE 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      +    +   A        +     +  +    FF   G  I + +
Sbjct: 130 DQIGKAGDALVNTIKDNQGRVTSGALATATTVTEIITGAVLTLFTTIFFLYGGKEIWEFV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         ++   +    +         +A+ + + +G       VP  + L  + 
Sbjct: 190 TRIFPTAVRPRVRRAGVLGFGSLIGYVRATVAVALVDAIGIGVGLAAFSVPLALPLASLV 249

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     IS        LI    F A  + +   + + +    L+P ++G  +++
Sbjct: 250 FLGAFIPIIGAAISGFVAVFIALITKGAFTAAMILVIVIVVMQVEGHVLQPLIMGHAVQI 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L     +  G    G++G  +    +A++    +  I     +   +  
Sbjct: 310 HALAVVLAIAAGGVLGGIIGALLAVPTVAVLNTAIRALIEPFDADDPYLRE 360


>gi|168233553|ref|ZP_02658611.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472682|ref|ZP_03078666.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|238910820|ref|ZP_04654657.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|194459046|gb|EDX47885.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205332357|gb|EDZ19121.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 372

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W AI   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAIVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|91200718|emb|CAJ73770.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 363

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/355 (10%), Positives = 111/355 (31%), Gaps = 10/355 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------EESSTFL 62
           + ++    +   L+  Y+LKG    +  A  I +   P+      ++             
Sbjct: 4   RTLLWLCAIAAFLLVCYYLKGILISLFLAFTIAYIVDPLLDIIEKRRFLFLKKGLPRGLA 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+    ++ +      +     +  ++ +   +               +       +  
Sbjct: 64  IVVLLTGMLFMAGGAAAYTIPKTLHGIERVGMVLKKQYPKYQENVELFIENHKDTGIAIF 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRF--ASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               L      +  ++          +       +     +   ++I+   +   +  +D
Sbjct: 124 LKTQLGIQNGSEKETQEKRPGLMKFALATVKNIFQGAFGLVGIIINIVVFGVVTIYLLKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I  +  +L          +I   + + +++   G   + I   ++ G    + GVP 
Sbjct: 184 FDVIIIKCRNLLPVSKKEKIFEIFGKINENLKAFLRGQITVCIILSIIYGIGLTVIGVPL 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRP 298
              + ++     +IP    +     ++ L      +I +   +     +  F     + P
Sbjct: 244 SYLIALLGGFGNVIPYIGIMLGLVPALILAFIQYQDITHLILVVAVFGVGQFFESTIITP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +VG  + L  +     ++   + +G LGL +   ++A+  V+  E ++  K   
Sbjct: 304 KIVGTKLGLHPVAIILSILICSQILGFLGLLLAVPIVAVAKVLIDEGLLRYKNTD 358


>gi|300817742|ref|ZP_07097957.1| hypothetical protein HMPREF9345_02815 [Escherichia coli MS 107-1]
 gi|300529730|gb|EFK50792.1| hypothetical protein HMPREF9345_02815 [Escherichia coli MS 107-1]
          Length = 353

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T     + L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVGGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 353


>gi|225389457|ref|ZP_03759181.1| hypothetical protein CLOSTASPAR_03205 [Clostridium asparagiforme
           DSM 15981]
 gi|225044483|gb|EEG54729.1| hypothetical protein CLOSTASPAR_03205 [Clostridium asparagiforme
           DSM 15981]
          Length = 379

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 114/341 (33%), Gaps = 6/341 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++  +I F+  V L FL      FF P +   II   + P       + +      ++
Sbjct: 14  RLVLNILIPFMGWVFLCFLGPKLLRFFMPFVIGWIIALIANPPVRFLERRLKLVRKHSSI 73

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW- 123
           +  V V+ + I  L  LF      +  L   +           +   +    ++      
Sbjct: 74  LIVVLVLAMVIGLLYLLFSRTAAGISALFKTLPQLYTALEADVKTNMEEISHLFQFFPPG 133

Query: 124 -TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +  +   +    + + L           A           +  +  I++ +FF  D  
Sbjct: 134 VQQAWNQLTANIGDALSMLVQKAAPPTMEAAGTVAKSIPGALVYSVVTILSSYFFIVDRD 193

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I      L       Y++ ++  V  ++   FL    I     L+L + +++ GV    
Sbjct: 194 RIIAFWKQLLPEWCTRYYRYLTGEVKHLVGGYFLAQFKIMFVVWLILMAGFFVLGVSYAP 253

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  + A +  +P     +       + +    +      L   +   ++ + ++P LVG
Sbjct: 254 VLSFLIAFLDFLPVFGTGTALLPWGVVKLLAGEYAFAAGLLLLYVLTQVIRQLVQPKLVG 313

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + L  L T   L  G +  GL G+ +   +      ++K
Sbjct: 314 DSMGLNPLFTLILLFLGFKISGLAGMILAVPIGLFFMNLYK 354


>gi|302520594|ref|ZP_07272936.1| integral membrane protein [Streptomyces sp. SPB78]
 gi|302429489|gb|EFL01305.1| integral membrane protein [Streptomyces sp. SPB78]
          Length = 367

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 109/345 (31%), Gaps = 21/345 (6%)

Query: 11  IMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++  ++  +  V ++    LK    P+L A++      P+YS  + +     +  A I  
Sbjct: 27  VLLLLVTGVAAVGIWLCVELKTAVTPILLAVLGTALLRPLYSLLVHRAHVQRSLAAGITC 86

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V+         +    +   ++++  +    +                     W    
Sbjct: 87  AAVVAAVGGAGYIVTSAIVDNGQQILDSIRSGIEDAAS-----------------WVGAE 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +   L                 +   +  + +  ++ +FFF RD     + 
Sbjct: 130 DTSLDDITHNARQLLNKFGGTAATGVINGLSVVGSFVATAVLALLLMFFFLRDAGRALRG 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L         + ++R   + +     G TIIA+ +   +     + GVP  + LG +
Sbjct: 190 LRELSPGDSSDLVEAMARRAYQAVAGFMHGTTIIALIDATFITIGLLVLGVPGALGLGAL 249

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP     +S     +  L       A  +         +    L+P +    ++
Sbjct: 250 VFLGAYIPYLGAFLSGAVAILVALADRGFVIALWVLGVVLAVQVLEGHLLQPVVQSRTVQ 309

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +        +  G    G+LG+ +   L A    I++E      +
Sbjct: 310 MHPAVVMVTITAGASLAGILGMLLAVPLTAAAFGIFRELRERYGD 354


>gi|227546571|ref|ZP_03976620.1| hypothetical integral membrane protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
 gi|227212888|gb|EEI80767.1| hypothetical integral membrane protein [Bifidobacterium longum
           subsp. infantis ATCC 55813]
          Length = 504

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 109/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAVIVFMFCWRSWGDISYLVLDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +    +         +            T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYEQIREFVDQYA------------T 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|254520064|ref|ZP_05132120.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913813|gb|EEH99014.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 388

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 114/338 (33%), Gaps = 10/338 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------KKEESSTFLAVIATVSVMCLFI 75
            L  ++ F      A I+ F      +           K +       + + ++   +  
Sbjct: 43  ILVVMQPFIIGFSIAYIVNFLLNFYENKVFETKYIKKIKLKSKRGLAILFSYITTFFIIS 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + + FL    +  +  LV+ +     +      ++++I   +   + +++ L    +  +
Sbjct: 103 MFVKFLLPQLIDSVVGLVNDIPSYITNTT---NFVNEIIMKLNIEDQYSQVLIDNFNSLV 159

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                  TN I  +  F +       +  L II  +  L    +      +    L    
Sbjct: 160 NYIIRFATNLIPALGGFLASVASSIWNVILGIIVSVYLLIDKEKLCALSKKITYGLFPES 219

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     K+            +G  I ++  G++      +  +P  + + VI  I  +IP
Sbjct: 220 YADEIIKLVDRSNYTFGRFLVGKIIDSLIIGVLTFIILTIFKMPYTILVSVIVGITNIIP 279

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      S  +++  +   A    L       +    + P ++G  I +      F 
Sbjct: 280 FFGPFIGAIPSFIIILFVSPVQALWFLLIILFIQQLDGNVIGPKILGDSIGISAFWILFS 339

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++   + +G++G+ IG  L A+   I KE I +    K
Sbjct: 340 ILVAGKLLGIVGMIIGVPLFAIFYSIVKEFIESKLRKK 377


>gi|307701351|ref|ZP_07638372.1| putative membrane protein [Mobiluncus mulieris FB024-16]
 gi|307613512|gb|EFN92760.1| putative membrane protein [Mobiluncus mulieris FB024-16]
          Length = 504

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 100/335 (29%), Gaps = 17/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +     F ++  L+ +   F P   AL +  T  P+    IS+ +  +   A++  V
Sbjct: 102 RYALALAGTFAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLISR-KVPAALAALLNIV 160

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + +     +         EL                 L  +           +   
Sbjct: 161 LMFAVMLGVTGMIAGALTAVTTELPRYQRKFQILYQDSIHLLEKL---------GDRFNI 211

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+   ++         +    A+  G          +  I  +          ++  
Sbjct: 212 DMSSVTSPAQRVDLGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELA 271

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +        R   +  R  FL  T    G  ++     ++  VPS +  G++ 
Sbjct: 272 T------YAPGLAISLRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILA 325

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       + +L+   +  A  + +   +   +V   ++P   G  + L
Sbjct: 326 FVANYIPAVGFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGL 385

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +F  L+     +G LG  +   +   I  I+
Sbjct: 386 NPTISFLSLMVWSAVLGPLGAVVSVPMTLFIKAIF 420


>gi|261323287|ref|ZP_05962484.1| conserved hypothetical protein [Brucella neotomae 5K33]
 gi|261299267|gb|EEY02764.1| conserved hypothetical protein [Brucella neotomae 5K33]
          Length = 354

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/349 (21%), Positives = 144/349 (41%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     ++  + +   + L  ++  VL A+I+    +P+    +          A 
Sbjct: 3   MSVQRASFYILLTLVTIAFAWLLIPYYTAVLWAVIMAVIFYPVQQWLVLLLRGRRNIAAF 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  +CL I+P+L +F   + E   L  ++             +          E   
Sbjct: 63  LSVLMCICLVIIPMLAIFGSLVDEGTSLYQRLSSREFDINGYIARIMAALP-ESLEEWLK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +      +      + +   G          FG   L + +    M+  LFF +RDG  +
Sbjct: 122 RFELGTFADWRARISSVVMQGSQLFAARLVSFGQNTLQFFIGFGIMLYLLFFLFRDGADV 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++      L   Y ++       VIR+T  G  IIAI +G++ G  +WL G+ + +  
Sbjct: 182 GKKIRRAIP-LSDDYTRQFLEKFTAVIRATVKGNIIIAIIQGMIGGVTFWLLGIEAALLW 240

Query: 245 GVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           GVI    +M+P  GA + +T  +++  + G+ ++   L + G + + +VD  LR  LVG 
Sbjct: 241 GVIMTFCSMLPAVGAALVWTPAAVWFFVSGDWWSGAILVVVGVLVIGLVDNLLRLPLVGK 300

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             ++P        VGG+  +G+ G  IGP++ A+    W       K+ 
Sbjct: 301 GTRMPDYVVLISTVGGISLIGINGFVIGPLIAAMFIAAWSLLAEEQKDQ 349


>gi|327481481|gb|AEA84791.1| PerM family membrane protein [Pseudomonas stutzeri DSM 4166]
          Length = 358

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 113/350 (32%), Gaps = 12/350 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++F+    +  L    APVL+ L++ F    +  +   ++     
Sbjct: 9   MQRYFSDEEAVVLAVLLFLAFAIVLTLGKMLAPVLAGLVLAFLMQGLVGAMERRRVPH-L 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +  + + +V  LF+      ++  L +++         +   L +    +   
Sbjct: 68  LAVWLVFLMFVGVLVVCTLFIVPLLWQQVLTLFNELPRMLVEWQSLLLLLPERYPQLVTE 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   + +   +                 +   +     + +   + ++ + I +FFF +D
Sbjct: 128 EQVLRGIDFMRGEI--------GRYGQLVLTSSLSSLPLLIGLMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              IS  +             ++S+ +   I +   G  I  +   +V  + +   G+  
Sbjct: 180 REQISNWIKGYLPRE-RGLITQVSQEMNLQIANYIRGKAIEILICAVVSYAVFAALGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + ++  +  ++P       T     +     G       L +  AI   +    L P
Sbjct: 239 AALMAMLVGVSVVVPYIGATVVTIPIALIGIFQWGLGDQFFYLMVAYAIIQTLDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLYAWPRE 348


>gi|55980278|ref|YP_143575.1| hypothetical protein TTHA0309 [Thermus thermophilus HB8]
 gi|55771691|dbj|BAD70132.1| conserved hypothetical protein [Thermus thermophilus HB8]
          Length = 365

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 110/332 (33%), Gaps = 4/332 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL--FYY 84
                + +L+A    +   P+  +   ++   +  + ++  +  + L +   L       
Sbjct: 33  AWPALSVLLTAFAFAYLVHPLVQALERRRLPRAVGVVLVYLLLGLFLALASFLAAQTVVE 92

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
                ++L   +       + +P     +P       +  +   + + L       L   
Sbjct: 93  LSRLARDLPRLLDPLLAWLVALPDRAQAVPVPESLRPVLEELTRNLRGLLQGFLEALVRW 152

Query: 145 GIDFIP--RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +        F    L     +   +I   +F  D   + +   ++    +    + 
Sbjct: 153 LQGLLAQGGSLLGFFTSLLGGVFQLFTALILSAYFLYDLPRLGRAALAVFPEPYQPLAQD 212

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++  +   +     G  ++A+  G ++G  +WL GVP   +LG +  +  +IP    +  
Sbjct: 213 LAAKLNASVGGYVRGQLLVALCVGFLVGLGFWLVGVPLAASLGFLAGVFNLIPFVGVVVS 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L   G +  A    L       +    L P +VG   +L  +     ++ G   
Sbjct: 273 GVPALLLAATGGLGKAALALLVMVAANQLEAHVLGPLIVGRATRLHPVTAIAAILTGGTL 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            GL G  +     A + V+ ++     +  +E
Sbjct: 333 FGLWGALLAVPAAAFLKVVLEDYYKGSRFYRE 364


>gi|170680839|ref|YP_001743566.1| putative inner membrane protein [Escherichia coli SMS-3-5]
 gi|170518557|gb|ACB16735.1| inner membrane protein YdiK [Escherichia coli SMS-3-5]
          Length = 370

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKFMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|149925951|ref|ZP_01914214.1| hypothetical protein LMED105_02845 [Limnobacter sp. MED105]
 gi|149825239|gb|EDM84450.1| hypothetical protein LMED105_02845 [Limnobacter sp. MED105]
          Length = 385

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 107/331 (32%), Gaps = 8/331 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL--AVIATVSVMCLFIVPLLFLFYY 84
           L    AP ++A ++ +           K          AV+   +++ +F    L     
Sbjct: 53  LWPVLAPFVAAFVLAYLLAAPSRWVHGKLRGRIPLPVCAVLTFFALLLIFSSVGLLFIPV 112

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + +++ + S +     +         +   G+  S   T+      +    +   L   
Sbjct: 113 VLTQLELIQSNLPQLIVNVKRTVLPWLNEAFGLTISVDSTEMKDRIAAYISENRGTLAEL 172

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +   +       L     +   +IA  F       I++Q   +         + + 
Sbjct: 173 STKILRSGSQSV----LGITGFVSLTVIATLFILPGWTQITKQFQQVFPPHLWKRAQPLF 228

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  V+     GM I+ +           + G+ S  ALG++  ++ ++P         
Sbjct: 229 SEIDSVMTEYIKGMMIVMLFLSTFYSIGLSVVGLQSGWALGMLAGVLCVVPYLGFAVALL 288

Query: 265 VSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           V +    L          + L   +  F+    L P +VG  I L  L   F L      
Sbjct: 289 VGLLTAALELQGFLPIFLVLLVFVVGQFLEGFVLTPLVVGDKIGLSALAVIFALAFFGAV 348

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            GL+G+F+   L A+  V +  +    +++ 
Sbjct: 349 FGLVGVFLALPLAAIFKVAYLHAFAHYEQSD 379


>gi|148261519|ref|YP_001235646.1| hypothetical protein Acry_2536 [Acidiphilium cryptum JF-5]
 gi|326405006|ref|YP_004285088.1| hypothetical protein ACMV_28590 [Acidiphilium multivorum AIU301]
 gi|146403200|gb|ABQ31727.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
 gi|325051868|dbj|BAJ82206.1| hypothetical protein ACMV_28590 [Acidiphilium multivorum AIU301]
          Length = 364

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/328 (15%), Positives = 119/328 (36%), Gaps = 7/328 (2%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P ++A  I +   P  S+   +     +  A+I  ++++    +  L L+     
Sbjct: 32  SAILLPFVAAAGIAYFLDPAVSALH-RLGLPRSLGAIIMLLAMIAGVGLCALLLYPLISA 90

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           ++  L  ++                    +  +   +  +S+     + +E     N   
Sbjct: 91  QISLLAQQLPGMIAGLQKFTAH----QISLIQARFGSGFVSNKLQSLVSNEAGAIVNFAG 146

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
              R     G    +    ++   I  F+F RD   +  +LDS     + +  + ++R +
Sbjct: 147 SAARQVLGTGFALFNILTLLVITPIVAFYFLRDWPLVMGRLDSWLPRSYESVIRNLAREI 206

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +++ +   G  I  +  G+   +   LAG+   + +G+   +++ IP    I     SI
Sbjct: 207 SRILNAWLRGQAICCLFLGVFYAATLTLAGLNLGLVVGLTAGLLSFIPYVGTIVGAVSSI 266

Query: 268 YLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            L     G + +   +     I   + D  + P  +G  + L  +   F L  G  T G 
Sbjct: 267 VLALGQFGGLDHVLVVGGIFVIGQLLNDYVVAPRFLGDRLGLSSVWVIFALFAGAETFGF 326

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           LG+ +   + A + V+ +  +    ++ 
Sbjct: 327 LGVLLAVPVTATLGVLARFWLRHYLQSP 354


>gi|270261590|ref|ZP_06189863.1| putative inner membrane protein [Serratia odorifera 4Rx13]
 gi|270045074|gb|EFA18165.1| putative inner membrane protein [Serratia odorifera 4Rx13]
          Length = 366

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 135/357 (37%), Gaps = 6/357 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L         I+ +I+   + ++ F      A ++   +WP+            +  
Sbjct: 7   RYDLPRIIFGVLFIVIMIVACFWVIQPFILGFAWAGMVVIATWPLLIKLQKLLWGRRSLA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            ++ T+ ++ LFI+P+  L    +     +V+      +  IP   WL  IP  G     
Sbjct: 67  VLVMTLLLILLFILPISLLVSSVVDNSAPVVAWASTPGKLHIPDLAWLQSIPMIGNKVYN 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +   ++   +  +            +    A+  G     + L    M++     Y  G
Sbjct: 127 SYHTLVNAGGAALLAKIQPYFGQTATWFVAQAAHIGR----FLLHCTLMLLFSVLLYARG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++G+P+ 
Sbjct: 183 EQVALGIRHFAARLAAERGDAAVVLGGQAIRAVALGVVVTALVQSVLGGIGLAVSGIPAA 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I  +   G  +      I+L   G+    T L +W  +   + D  LRP L+
Sbjct: 243 TLLTVLIFICCVAQLGPLLVLVPAIIWLYWSGDTTWGTVLLVWSCVVATL-DNVLRPVLI 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP L    G++GG+   G++GLFIGPV++A+   +    +    E    +  
Sbjct: 302 RMGADLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLTAWMDEAPEPTADLDE 358


>gi|16129644|ref|NP_416203.1| inner membrane protein, UPF0118 family [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113077|ref|NP_707587.1| putative inner membrane protein [Shigella flexneri 2a str. 301]
 gi|30063202|ref|NP_837373.1| putative inner membrane protein [Shigella flexneri 2a str. 2457T]
 gi|82543942|ref|YP_407889.1| inner membrane protein [Shigella boydii Sb227]
 gi|82776939|ref|YP_403288.1| putative inner membrane protein [Shigella dysenteriae Sd197]
 gi|89108528|ref|AP_002308.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|91210901|ref|YP_540887.1| putative inner membrane protein [Escherichia coli UTI89]
 gi|110805665|ref|YP_689185.1| putative inner membrane protein [Shigella flexneri 5 str. 8401]
 gi|117623867|ref|YP_852780.1| putative inner membrane protein [Escherichia coli APEC O1]
 gi|157157163|ref|YP_001462982.1| putative inner membrane protein [Escherichia coli E24377A]
 gi|157161153|ref|YP_001458471.1| putative inner membrane protein [Escherichia coli HS]
 gi|170019962|ref|YP_001724916.1| putative inner membrane protein [Escherichia coli ATCC 8739]
 gi|170081348|ref|YP_001730668.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|187732656|ref|YP_001880447.1| putative inner membrane protein [Shigella boydii CDC 3083-94]
 gi|188492403|ref|ZP_02999673.1| putative membrane protein [Escherichia coli 53638]
 gi|191167867|ref|ZP_03029672.1| inner membrane protein YdiK [Escherichia coli B7A]
 gi|193065271|ref|ZP_03046343.1| inner membrane protein YdiK [Escherichia coli E22]
 gi|193068945|ref|ZP_03049904.1| inner membrane protein YdiK [Escherichia coli E110019]
 gi|194429510|ref|ZP_03062032.1| inner membrane protein YdiK [Escherichia coli B171]
 gi|194438554|ref|ZP_03070643.1| inner membrane protein YdiK [Escherichia coli 101-1]
 gi|209919002|ref|YP_002293086.1| putative inner membrane protein [Escherichia coli SE11]
 gi|218554254|ref|YP_002387167.1| hypothetical protein ECIAI1_1740 [Escherichia coli IAI1]
 gi|218695249|ref|YP_002402916.1| putative inner membrane protein [Escherichia coli 55989]
 gi|237705634|ref|ZP_04536115.1| inner membrane protein YdiK [Escherichia sp. 3_2_53FAA]
 gi|238900903|ref|YP_002926699.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253773356|ref|YP_003036187.1| inner membrane protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161749|ref|YP_003044857.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|256018118|ref|ZP_05431983.1| putative inner membrane protein [Shigella sp. D9]
 gi|256022649|ref|ZP_05436514.1| putative inner membrane protein [Escherichia sp. 4_1_40B]
 gi|260843994|ref|YP_003221772.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260855512|ref|YP_003229403.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|293415004|ref|ZP_06657647.1| inner membrane protein [Escherichia coli B185]
 gi|293446062|ref|ZP_06662484.1| inner membrane protein [Escherichia coli B088]
 gi|300818325|ref|ZP_07098535.1| hypothetical protein HMPREF9345_03403 [Escherichia coli MS 107-1]
 gi|300821439|ref|ZP_07101586.1| hypothetical protein HMPREF9346_01266 [Escherichia coli MS 119-7]
 gi|300904539|ref|ZP_07122378.1| hypothetical protein HMPREF9536_02615 [Escherichia coli MS 84-1]
 gi|300918058|ref|ZP_07134679.1| hypothetical protein HMPREF9540_01865 [Escherichia coli MS 115-1]
 gi|300924723|ref|ZP_07140669.1| hypothetical protein HMPREF9548_02850 [Escherichia coli MS 182-1]
 gi|300930842|ref|ZP_07146212.1| hypothetical protein HMPREF9550_03100 [Escherichia coli MS 187-1]
 gi|300951280|ref|ZP_07165129.1| hypothetical protein HMPREF9541_04601 [Escherichia coli MS 116-1]
 gi|300958569|ref|ZP_07170699.1| hypothetical protein HMPREF9547_04277 [Escherichia coli MS 175-1]
 gi|301027867|ref|ZP_07191168.1| hypothetical protein HMPREF9551_03793 [Escherichia coli MS 196-1]
 gi|301303203|ref|ZP_07209329.1| hypothetical protein HMPREF9347_01794 [Escherichia coli MS 124-1]
 gi|301326548|ref|ZP_07219889.1| hypothetical protein HMPREF9535_01500 [Escherichia coli MS 78-1]
 gi|301647871|ref|ZP_07247653.1| hypothetical protein HMPREF9543_04379 [Escherichia coli MS 146-1]
 gi|306815059|ref|ZP_07449215.1| putative inner membrane protein [Escherichia coli NC101]
 gi|307138347|ref|ZP_07497703.1| putative inner membrane protein [Escherichia coli H736]
 gi|307310741|ref|ZP_07590387.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|309788635|ref|ZP_07683235.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309793455|ref|ZP_07687882.1| hypothetical protein HMPREF9348_00614 [Escherichia coli MS 145-7]
 gi|331642286|ref|ZP_08343421.1| putative permease [Escherichia coli H736]
 gi|331647179|ref|ZP_08348273.1| putative permease [Escherichia coli M605]
 gi|331653088|ref|ZP_08354093.1| putative permease [Escherichia coli M718]
 gi|331657665|ref|ZP_08358627.1| putative permease [Escherichia coli TA206]
 gi|331668373|ref|ZP_08369221.1| putative permease [Escherichia coli TA271]
 gi|331683195|ref|ZP_08383796.1| putative permease [Escherichia coli H299]
 gi|84027918|sp|P0AFS7|YDIK_ECOLI RecName: Full=UPF0118 inner membrane protein ydiK
 gi|84027919|sp|P0AFS8|YDIK_SHIFL RecName: Full=UPF0118 inner membrane protein ydiK
 gi|1742759|dbj|BAA15450.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787979|gb|AAC74758.1| inner membrane protein, UPF0118 family [Escherichia coli str. K-12
           substr. MG1655]
 gi|24052052|gb|AAN43294.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041454|gb|AAP17182.1| hypothetical protein S1850 [Shigella flexneri 2a str. 2457T]
 gi|81241087|gb|ABB61797.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|81245353|gb|ABB66061.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|91072475|gb|ABE07356.1| putative purine regulated protein YdiK [Escherichia coli UTI89]
 gi|110615213|gb|ABF03880.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|115512991|gb|ABJ01066.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|157066833|gb|ABV06088.1| inner membrane protein YdiK [Escherichia coli HS]
 gi|157079193|gb|ABV18901.1| inner membrane protein YdiK [Escherichia coli E24377A]
 gi|169754890|gb|ACA77589.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|169889183|gb|ACB02890.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|187429648|gb|ACD08922.1| inner membrane protein YdiK [Shigella boydii CDC 3083-94]
 gi|188487602|gb|EDU62705.1| putative membrane protein [Escherichia coli 53638]
 gi|190902126|gb|EDV61870.1| inner membrane protein YdiK [Escherichia coli B7A]
 gi|192927065|gb|EDV81687.1| inner membrane protein YdiK [Escherichia coli E22]
 gi|192957740|gb|EDV88184.1| inner membrane protein YdiK [Escherichia coli E110019]
 gi|194412474|gb|EDX28774.1| inner membrane protein YdiK [Escherichia coli B171]
 gi|194422564|gb|EDX38562.1| inner membrane protein YdiK [Escherichia coli 101-1]
 gi|209912261|dbj|BAG77335.1| putative transport protein [Escherichia coli SE11]
 gi|218351981|emb|CAU97713.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|218361022|emb|CAQ98597.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|222033444|emb|CAP76185.1| UPF0118 inner membrane protein ydiK [Escherichia coli LF82]
 gi|226900391|gb|EEH86650.1| inner membrane protein YdiK [Escherichia sp. 3_2_53FAA]
 gi|238862554|gb|ACR64552.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|253324400|gb|ACT29002.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973650|gb|ACT39321.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253977844|gb|ACT43514.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|257754161|dbj|BAI25663.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257759141|dbj|BAI30638.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260449189|gb|ACX39611.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|281601125|gb|ADA74109.1| inner membrane protein ydiK [Shigella flexneri 2002017]
 gi|291322892|gb|EFE62320.1| inner membrane protein [Escherichia coli B088]
 gi|291432652|gb|EFF05631.1| inner membrane protein [Escherichia coli B185]
 gi|294492598|gb|ADE91354.1| inner membrane protein YdiK [Escherichia coli IHE3034]
 gi|299879023|gb|EFI87234.1| hypothetical protein HMPREF9551_03793 [Escherichia coli MS 196-1]
 gi|300314778|gb|EFJ64562.1| hypothetical protein HMPREF9547_04277 [Escherichia coli MS 175-1]
 gi|300403533|gb|EFJ87071.1| hypothetical protein HMPREF9536_02615 [Escherichia coli MS 84-1]
 gi|300414749|gb|EFJ98059.1| hypothetical protein HMPREF9540_01865 [Escherichia coli MS 115-1]
 gi|300419101|gb|EFK02412.1| hypothetical protein HMPREF9548_02850 [Escherichia coli MS 182-1]
 gi|300449461|gb|EFK13081.1| hypothetical protein HMPREF9541_04601 [Escherichia coli MS 116-1]
 gi|300461317|gb|EFK24810.1| hypothetical protein HMPREF9550_03100 [Escherichia coli MS 187-1]
 gi|300525942|gb|EFK47011.1| hypothetical protein HMPREF9346_01266 [Escherichia coli MS 119-7]
 gi|300528965|gb|EFK50027.1| hypothetical protein HMPREF9345_03403 [Escherichia coli MS 107-1]
 gi|300841612|gb|EFK69372.1| hypothetical protein HMPREF9347_01794 [Escherichia coli MS 124-1]
 gi|300846768|gb|EFK74528.1| hypothetical protein HMPREF9535_01500 [Escherichia coli MS 78-1]
 gi|301074012|gb|EFK88818.1| hypothetical protein HMPREF9543_04379 [Escherichia coli MS 146-1]
 gi|305851707|gb|EFM52160.1| putative inner membrane protein [Escherichia coli NC101]
 gi|306908919|gb|EFN39415.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|308123042|gb|EFO60304.1| hypothetical protein HMPREF9348_00614 [Escherichia coli MS 145-7]
 gi|308923457|gb|EFP68964.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309701913|emb|CBJ01225.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|312946288|gb|ADR27115.1| putative inner membrane protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313648970|gb|EFS13407.1| hypothetical protein SF2457T_2635 [Shigella flexneri 2a str. 2457T]
 gi|313848654|emb|CAQ32163.2| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|315060993|gb|ADT75320.1| predicted inner membrane protein [Escherichia coli W]
 gi|315136329|dbj|BAJ43488.1| putative inner membrane protein [Escherichia coli DH1]
 gi|315257509|gb|EFU37477.1| putative membrane protein [Escherichia coli MS 85-1]
 gi|315286386|gb|EFU45822.1| hypothetical protein HMPREF9539_03668 [Escherichia coli MS 110-3]
 gi|315299716|gb|EFU58956.1| hypothetical protein HMPREF9545_01227 [Escherichia coli MS 16-3]
 gi|315618883|gb|EFU99466.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320181288|gb|EFW56207.1| Putative membrane protein [Shigella boydii ATCC 9905]
 gi|320184437|gb|EFW59245.1| Putative membrane protein [Shigella flexneri CDC 796-83]
 gi|320197870|gb|EFW72478.1| Putative membrane protein [Escherichia coli EC4100B]
 gi|323153078|gb|EFZ39347.1| hypothetical protein ECEPECA14_5161 [Escherichia coli EPECa14]
 gi|323163462|gb|EFZ49288.1| hypothetical protein ECE128010_0313 [Escherichia coli E128010]
 gi|323170001|gb|EFZ55657.1| hypothetical protein ECLT68_5645 [Escherichia coli LT-68]
 gi|323186039|gb|EFZ71395.1| hypothetical protein ECOK1357_0501 [Escherichia coli 1357]
 gi|323378435|gb|ADX50703.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323937291|gb|EGB33570.1| ydiK protein [Escherichia coli E1520]
 gi|323940645|gb|EGB36836.1| ydiK protein [Escherichia coli E482]
 gi|323948016|gb|EGB44008.1| ydiK protein [Escherichia coli H120]
 gi|323952195|gb|EGB48068.1| ydiK protein [Escherichia coli H252]
 gi|323973932|gb|EGB69104.1| ydiK protein [Escherichia coli TA007]
 gi|324016518|gb|EGB85737.1| hypothetical protein HMPREF9542_04862 [Escherichia coli MS 117-3]
 gi|324119172|gb|EGC13060.1| ydiK protein [Escherichia coli E1167]
 gi|330911495|gb|EGH40005.1| putative membrane protein [Escherichia coli AA86]
 gi|331039084|gb|EGI11304.1| putative permease [Escherichia coli H736]
 gi|331043962|gb|EGI16098.1| putative permease [Escherichia coli M605]
 gi|331049186|gb|EGI21258.1| putative permease [Escherichia coli M718]
 gi|331055913|gb|EGI27922.1| putative permease [Escherichia coli TA206]
 gi|331063567|gb|EGI35478.1| putative permease [Escherichia coli TA271]
 gi|331079410|gb|EGI50607.1| putative permease [Escherichia coli H299]
 gi|332090828|gb|EGI95920.1| hypothetical protein SB521682_1834 [Shigella boydii 5216-82]
 gi|332096073|gb|EGJ01078.1| hypothetical protein SB359474_1615 [Shigella boydii 3594-74]
 gi|332101515|gb|EGJ04861.1| inner membrane protein YdiK [Shigella sp. D9]
          Length = 370

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|289523414|ref|ZP_06440268.1| putative membrane protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503106|gb|EFD24270.1| putative membrane protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 364

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 136/347 (39%), Gaps = 5/347 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVS 69
              +   + L+ +   +    P++ ++I+ F S P+      K  + +     A+I    
Sbjct: 17  FLIVFALLALLGISITEPIVRPLMWSVILSFFSHPLNKLLYVKVFRGKRRNLAALITAGC 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLS 128
           V+ L  VP+ F+      E    +S +    +          + +   +    +    + 
Sbjct: 77  VVLLICVPMGFIGISLAREALRFISSLSDNLESIQETFAGAWASLVNRLPDYVIQYFGIK 136

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S             I  +  F+             +  + ++ F+  RDG  + + L
Sbjct: 137 GDPSFLRDLTHRAVNYVISSLGDFSRGLLGNAFKMVYQLFVISVSTFYLLRDGHVVIEYL 196

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D +   L       +     +++++  +G T+ A  +  +  + ++  G+P+ +  GV+ 
Sbjct: 197 DDILP-LPKEERASLFTSATRMMKAVVIGTTVTAGIQACLGVAGWFFLGLPAPLLAGVLL 255

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I AMIP    P      ++YL + GN+  +  L  W  + +  +D  +RP  +    ++
Sbjct: 256 FICAMIPFIGTPFVLIPAAVYLFLMGNVKESIILAGWALLVVSTIDNLIRPLFISEGSRV 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            FL  F G+VGG+   G LG+F+GP++++L               +E
Sbjct: 316 HFLLVFLGVVGGIHVWGFLGIFLGPIVLSLFIFFLDCYRRIWSTKRE 362


>gi|291526224|emb|CBK91811.1| Predicted permease [Eubacterium rectale DSM 17629]
 gi|291526734|emb|CBK92320.1| Predicted permease [Eubacterium rectale M104/1]
          Length = 437

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 120/376 (31%), Gaps = 27/376 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFIS------ 53
             + + +  +   +LY  +GF            P++  L++ +   P+            
Sbjct: 42  VFVTFAVSILFFFALYRFEGFAGIWSKLLAAAMPIIMGLVLAYLMNPVMLWLERCFKKLL 101

Query: 54  ---------KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                     ++ S       + + ++ +  + +  +    +  +  L+  +       I
Sbjct: 102 SKKMKSESKLRKVSRALAITGSVIILVAIISLLIAAIVPSVIASISGLMKTLPNDVAAFI 161

Query: 105 PVPR--WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            + +     D      AS        + +              +  I            +
Sbjct: 162 NMIKNGNFGDSKIAELASTGLQNATDYIEDYATEKLIPEAQKYVAQITTGVISVVRGLFN 221

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + + II M+  +           + + ++ +        +  R   ++      G  I +
Sbjct: 222 FIIGIIVMVYVMSIQETLAGQSKKIIYAVCKPKTGNIIIETIRKTNEIFGGFISGKIIDS 281

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G++      +  +PS V + VI  +  +IP   P      S+ +++  + ++A  L 
Sbjct: 282 LIIGVIAYFGCLILRIPSSVLVAVIIGVTNVIPVFGPFIGAIPSLLIVVIQSPWHALYLL 341

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  +   +    + P ++G    L      F ++ G    G LG+ +G    A+I  I 
Sbjct: 342 IFIVVLQQVDGNIIGPKILGSSTGLSTFWVMFAILIGGGMFGFLGMLLGVPTFAVIYYIV 401

Query: 343 KESIMAIKENKEKISS 358
           K  +      K+    
Sbjct: 402 KRVVNYALRKKKLPED 417


>gi|111025354|ref|YP_707774.1| hypothetical protein RHA1_ro08572 [Rhodococcus jostii RHA1]
 gi|110824333|gb|ABG99616.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 395

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 43/348 (12%), Positives = 103/348 (29%), Gaps = 16/348 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            +   G     + + ++  L   +     +  AL +     PI S  +            
Sbjct: 63  FIGATGAAGVALTYGLVHLLITAQSILILIGLALFLALGLDPITSWLVDH-NLPRWLAVT 121

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +              + + ++L+ +              +  +       +   
Sbjct: 122 VVFTVALAFTAGFFAVAIPPLVTQTEQLIDRAPDYLNQLQDHSSMVGKLNDRYHLQDRL- 180

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                         T         I       G    D     + + +   +F  +  +I
Sbjct: 181 --------------TSAVNGSGQTIVNETVSAGAAIFDALGKFLILAVLTVYFLANLPAI 226

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 L  H        I   +   + +  LG  +I++  G           VP  + L
Sbjct: 227 RTTGYRLIPHSRRPRAILIGDQIFAKVGAYVLGNVLISVIAGTATAIWLLAFNVPYALFL 286

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV  A+  ++P         V   + +  ++       ++        D  L P ++G  
Sbjct: 287 GVFVALFDLVPVVGSTIAGIVVAAVALTVSLPVCIATVIFFVAFRLAEDYLLVPRIIGRT 346

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +K+P L T   ++ G   +G++G  +   + A I ++ +E++    ++
Sbjct: 347 VKIPALTTVVAVLIGGTLLGIVGALVAIPIAAAIHLLVEETVFPRLDS 394


>gi|169630868|ref|YP_001704517.1| hypothetical protein MAB_3788c [Mycobacterium abscessus ATCC 19977]
 gi|169242835|emb|CAM63863.1| Conserved hypothetical protein [Mycobacterium abscessus]
          Length = 379

 Score =  122 bits (307), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 120/345 (34%), Gaps = 5/345 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++  +    I   +YFL+ +   ++ A +  +   P+Y     +    S   A +  
Sbjct: 9   QKRVLAVLTGVGIAFGIYFLRDYLILIVVAGVAAYLFSPLYRRLGKRFG--SGIAATLTL 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKH 126
           +  +   ++P+  L Y   L++  +V  V    +   +      +        + +   H
Sbjct: 67  LCALGAVVIPVGALVYVATLQITRMVDDVSSWVEGTDMTALGQKAFDVVNSVLARIPFVH 126

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +         S   L  N    + +              + I  +            +  
Sbjct: 127 VQLTPDTLRQSIGSLTENVGHGLLQVLQSTVGSVAAAVAACIIFLYVFVSLLVKQDKVLT 186

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALG 245
            L  L   L           +  ++R T  G  +IA+ +G+   ++ ++AG         
Sbjct: 187 LLRQLNP-LGEEITDLYLDKIGAMVRGTVKGQFVIAMAQGIAGAASVYVAGFRQGFFFFA 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++   +++IP G  I      I +++ G+      +  W  + +  +D  LRPFLV    
Sbjct: 246 ILLTALSIIPLGGGIVTIPFGIGMILFGHPVGGLFVIAWHLLVVSNIDNVLRPFLVPRGA 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +L        +  G+   G  G+ +GPVLM +I       +   K
Sbjct: 306 RLDPALMLLAVFSGIAAFGFWGIVLGPVLMIVIVTTIDVYLAVYK 350


>gi|325963817|ref|YP_004241723.1| permease [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469904|gb|ADX73589.1| putative permease [Arthrobacter phenanthrenivorans Sphe3]
          Length = 436

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 114/343 (33%), Gaps = 11/343 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +   +  ++             +++AL I     P+     S+ +       +++   
Sbjct: 104 GAVGVGLALLVYWIGSNTTQLLLWIVAALFIALGLEPVVGWLESR-KIPRPAGILVSVTV 162

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +     L    + ++ ++V +  +  +  I             +   L  +    
Sbjct: 163 LVSAVVGFFATLIPTIVEQVTQIVEQAPVWIRDFID----------SDFFRSLDDQFGVR 212

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +  + L +       +  I      FG    +     + +++   +F     ++ +   
Sbjct: 213 ERVTEELDKFVNDPAAMGGIFGGVVGFGSTVANGLFGTLIVLVLSLYFLAALPAMKKWGY 272

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         + +S  + + + +  +G  ++A+           + G+P  + L  + A
Sbjct: 273 RLAPRSRRHRVEALSEEITRSVGNYVIGQAVVALLNATFAFIVMSIVGIPFALLLAFVVA 332

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++A IP    +    V + + +      A    +     L      + P ++   + +P 
Sbjct: 333 LLAFIPLVGGMIAGVVVLLVSLTEGWQAAAVYGICYFSYLQFEAYFISPRIMQKAVAVPG 392

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                 ++ G   +G+LG  I     A + ++ +E  +  ++ 
Sbjct: 393 AVAVISVIAGGSLLGVLGALIAIPTAAAVLLLIREIYIVRQDQ 435


>gi|317056391|ref|YP_004104858.1| hypothetical protein Rumal_1726 [Ruminococcus albus 7]
 gi|315448660|gb|ADU22224.1| protein of unknown function UPF0118 [Ruminococcus albus 7]
          Length = 431

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 45/353 (12%), Positives = 96/353 (27%), Gaps = 17/353 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------------EESSTFLAVI 65
           IL S+Y       PV   L+I F + P+                      +       +I
Sbjct: 36  ILESIYNFFNVLQPVTWGLVIAFLTNPVMERTSKLLQRFNKSEEKKPGFSKLIKAVSVII 95

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +    +  +    +  + ++        +        +      +  S     
Sbjct: 96  TELLFLGIVTGIVAIVVPELIKSVMDIFDNAGSIVESVQKWINKIFRNYPSLEKSATKWL 155

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +     I  +       ++ I   A     +  ++ L  I  +  L    +    I 
Sbjct: 156 SDFNTDVGTIYDK---LKPMLENILSGAWGIVTVVKNFLLGFIVSVYMLCNKEKLLAQIK 212

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + S+                  V      G  I +I  GL+      +  +P    + 
Sbjct: 213 KIIISMTRKRTCEKLMSAFEQANTVFSGFITGKIIDSIIIGLICFIGLTIMSMPYATMIS 272

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  +IP   P+     +  L++           ++  +        L P ++G   
Sbjct: 273 VVIGVTNIIPFFGPLFGAVPTGLLILLIAPKKCIIFIIFVVVLQQFDGNILGPKILGDST 332

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            LP       L+      G  G+       AL     + S+      K    S
Sbjct: 333 GLPGFWVLISLILFGGLFGFGGMVFAVPTSALAYSFIRGSVENKLRKKNLPVS 385


>gi|226364629|ref|YP_002782411.1| hypothetical protein ROP_52190 [Rhodococcus opacus B4]
 gi|226243118|dbj|BAH53466.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 427

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 104/344 (30%), Gaps = 14/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +   +  L     PV  AL+      P+      K     +   ++  +
Sbjct: 59  RLLVIFAGLLTLGYIVTRLDTVLIPVGLALLASALLVPLVDWLQGK-GVPRSAAVLVVLI 117

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    + F+    +  +  L  +   +                  W ++       
Sbjct: 118 GSIGIVAGIMTFVVEQFIEGLPGLTEQFEASVTQIQ------------GWLTDGPFHFSE 165

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   S           +   A     +  +     +  +  L FF   G  I + +
Sbjct: 166 DQIRQAGDSVVKSIQENRQQLTSGALTTATVVGEIFTGALLTLFTLIFFLYGGTQIWEFV 225

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         +         +         +A  + + +G+   + GVP  + L  + 
Sbjct: 226 TRLVPSTSRRRVRLAGSEGFGSLIGYVRATVAVAAADAVGIGAGLAILGVPLALPLASLV 285

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A IP     ++     +  L+      A  +       + +    L+P L+G  ++L
Sbjct: 286 FIGAFIPIVGAFLTGFLAVLVALVTKGFLTALIVLGIIIGVMQLEAHVLQPLLLGRAVRL 345

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L     +  G+   G++G  +   ++AL+    +  + A  E
Sbjct: 346 HPLAVVLAITTGIVLAGIVGGLLAVPIVALLNTAVRSLLSADPE 389


>gi|215486863|ref|YP_002329294.1| putative inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215264935|emb|CAS09321.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPKDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLKTIPVIGTKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|328949569|ref|YP_004366904.1| protein of unknown function UPF0118 [Marinithermus hydrothermalis
           DSM 14884]
 gi|328449893|gb|AEB10794.1| protein of unknown function UPF0118 [Marinithermus hydrothermalis
           DSM 14884]
          Length = 371

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 108/348 (31%), Gaps = 8/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + ++ +   L   +  +   + A ++ + + P+       +      L V+   
Sbjct: 21  RVLAALLGVWALYQLLARAQSVWTAFVVAYVLAYLANPLVCWLE--RFRVRRVLGVVVAY 78

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ LF+     L    + ++      +       +     L D            + L 
Sbjct: 79  ALLFLFLGFASVLVAEVVGQLSRFARDLPALVAPLVQWVEGLPDRITRFEVPPELERVLQ 138

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGM------IFLDYCLSIIFMIIALFFFYRDGF 182
              +             ++++       G         +     +  + +   +   D  
Sbjct: 139 GASASLQALLEGFANTLLEWLRTLLGTGGSLIQGLAGIVGGLFQLFIVFVLTAYMLLDFP 198

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I Q L  +    +    + ++  +   +     G  +IA   G V+G   +  GVP   
Sbjct: 199 RIGQSLIQVFPRPYQPLIQDLAAKLDHAVGGYVRGQLLIAALVGTVVGLGLFFLGVPLAA 258

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           ALG I  +  ++P    I     ++ L +           +   +   +      P ++ 
Sbjct: 259 ALGFIAGVFNLVPYLGVIVSIIPALLLALPQGGVAVVGTLVVFILANQLEAHLFSPLILS 318

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +L  +     ++ G    GL G  +     A + VI+ E  +  +
Sbjct: 319 RATQLHPVTVILAILAGATLFGLWGAVLAVPFAAFLKVIFSEYYLNSR 366


>gi|113869032|ref|YP_727521.1| permease [Ralstonia eutropha H16]
 gi|113527808|emb|CAJ94153.1| predicted permease [Ralstonia eutropha H16]
          Length = 356

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 113/335 (33%), Gaps = 8/335 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++  ++   +  ++  L     P L A I  +   P       ++         +  
Sbjct: 11  KRILLWVVVAVALFAAIIALAPVLTPFLFAFIFAYVLNPGVDWLQRRRV-PRAVGVTLMI 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  + ++ +L        E+ ++  ++ +  +    V       P             
Sbjct: 70  LLLTVICVMLVLLAIAVLQREIPQIREQLPILLKKLNSVVS-----PRLAEFGVRIRFDF 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +++     +    + +  +  +    G   +     +  + I +F+   D   + ++
Sbjct: 125 PGLRNMLSDRFSASPEDLLVVLLNYVKMSGSALITVAGIVFIVPIVMFYLMMDWHMVMRR 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +    +    ++++     ++     G  ++ +    +      +AG    V +GV 
Sbjct: 185 IEGVVPRRWVPKVRELTNETDALLSQYLRGQILVMVILAAIYSIGLTIAGFDIGVPVGVF 244

Query: 248 TAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP         ++I   LL  GN +    + +      FI    L P LVG  I
Sbjct: 245 TGLAVFIPYIGFGVGLVMAILAALLQFGNWYGLAAVAVVYGFGQFIESFYLTPRLVGERI 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  L   F L+   +  G  G+ +     A++ V
Sbjct: 305 GLHPLVVIFALLAFGQLFGFFGVLLALPTCAVLLV 339


>gi|168334446|ref|ZP_02692621.1| hypothetical protein Epulo_05699 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 385

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/346 (17%), Positives = 114/346 (32%), Gaps = 18/346 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEE------------SSTFLAVIATVSVMCLF 74
                 PV++  II +     Y+    K                S    V+A   V+ + 
Sbjct: 36  FTTLLMPVITGFIIAYILKGPYNFVRDKVLRMSSKDTQTIQTTKSVIALVMAYTLVILVL 95

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +  + +       ++ L+S +           +   D   G   + + ++  +  +   
Sbjct: 96  TILAILVIPQLWNSIQSLISTLPDQIDILFARFQGFLDDMDGRLDTSVDSEIYTQLEEAW 155

Query: 135 ILSETFLKTNGIDFIPRFASRFG---MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    F+     D IP   +          +   + IF +  L    R    +S+ L + 
Sbjct: 156 VTVMNFVSAILTDVIPAVLNGIVEITTSITNMIFAFIFSVYFLTGKERLSSQMSRILYAY 215

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      ISRI      +   G    A   G++      +  +P  V + VI    
Sbjct: 216 LPKARAERILYISRITNNSFTNFINGQVAEAFILGILCFVGMLIFKMPYAVLVSVIIGAT 275

Query: 252 AMIPGGAPISFTAVSIYLLIKGNI---FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +IP   PI  +  + ++++  +      A    ++  +   I    + P +VG  I LP
Sbjct: 276 NIIPIFGPIFGSIPATFIVLMDDPSNPMMAVWFVVFILVMQRIDGDIIYPRVVGDSIGLP 335

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +     +V G    GL G+ IG  L A+   + KE        KE
Sbjct: 336 GVFVMLAIVIGSGLWGLTGMIIGVPLAAVFYRLIKEGTNLRLAEKE 381


>gi|251789301|ref|YP_003004022.1| putative inner membrane protein [Dickeya zeae Ech1591]
 gi|247537922|gb|ACT06543.1| protein of unknown function UPF0118 [Dickeya zeae Ech1591]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 128/349 (36%), Gaps = 4/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+            +   ++
Sbjct: 11  LARILFSLLFIGILIIACFWVVQPFILGFAWASMVVIATWPLLIRLQQMLWGYRSLAVIV 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ LF+ P   L    +     L+S +    +   P   WL  IP           
Sbjct: 71  MTLLLVLLFVFPTSILVSSVIDNASNLISWISAQGRLSPPELDWLQSIPLVGAKLHSSWH 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+H     ++++       I     +          + +    M++     Y  G  ++
Sbjct: 131 SLAHSGGPALMAK---IQPYIGQTASWVVSQAAHIGRFLMHCALMVLFSVLLYSKGDQVA 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L          +  + IR+  LG+ + AI + ++ G    LAG+P    L 
Sbjct: 188 LGVRRFAIRLGRQGGDSAVILAAQAIRAVALGVVVTAIVQSVLGGIGLALAGIPYTTLLT 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  +   G         I+L   G+    T L +W  +   + D  +RP L+    
Sbjct: 248 VLMFLSCVAQLGPLTVLIPAIIWLYWSGDTTWGTILLIWSCVVGTL-DNIIRPLLIRMGA 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP L    G++GG+   G++GLFIGPV++A+   +    +    E   
Sbjct: 307 DLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKESPEPSP 355


>gi|238922451|ref|YP_002935964.1| hypothetical protein EUBREC_0025 [Eubacterium rectale ATCC 33656]
 gi|238874123|gb|ACR73830.1| protein of unknown function UPF0118 [Eubacterium rectale ATCC
           33656]
          Length = 437

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/376 (12%), Positives = 121/376 (32%), Gaps = 27/376 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFIS------ 53
             + + +  +   +LY  +GF            P++  L++ +   P+            
Sbjct: 42  VFVTFAVSILFFFALYRFEGFAGIWSKLLAAAMPIIMGLVLAYLMNPVMLWLERCFKKLL 101

Query: 54  ---------KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                     ++ S       + + ++ +  + +  +    +  +  L+  +       I
Sbjct: 102 SKKMKSESKLRKVSRALAITGSVIILVAIISLLIAAIVPSVIASISGLMKTLPNDVAAFI 161

Query: 105 PVPR--WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            + +     D      AS        + ++             +  I            +
Sbjct: 162 NMIKNGNFGDSKIAELASTGLQNATDYIENYATEKLIPEAQKYVAQITTGVISIVRGLFN 221

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           + + II M+  +           + + ++ +        +  R   ++      G  I +
Sbjct: 222 FIIGIIVMVYVMSIQETLAGQSKKIIYAVCKPKTGNIIIETIRKTNEIFGGFISGKIIDS 281

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G++      +  +PS V + VI  +  +IP   P      S+ +++  + ++A  L 
Sbjct: 282 LIIGVIAYFGCLILRIPSSVLVAVIIGVTNVIPVFGPFIGAIPSLLIVVIQSPWHALYLL 341

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  +   +    + P ++G    L      F ++ G    G LG+ +G    A+I  I 
Sbjct: 342 IFIVVLQQVDGNIIGPKILGSSTGLSTFWVMFAILIGGGMFGFLGMLLGVPTFAVIYYIV 401

Query: 343 KESIMAIKENKEKISS 358
           K  +      K+    
Sbjct: 402 KRVVNYALRKKKLPED 417


>gi|226360347|ref|YP_002778125.1| hypothetical protein ROP_09330 [Rhodococcus opacus B4]
 gi|226238832|dbj|BAH49180.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 389

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/360 (11%), Positives = 112/360 (31%), Gaps = 23/360 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAP--------VLSALIIGFTSWPIYSSFISKKEESS 59
           P+ ++  ++  ++ V+ Y L G+           +  A +   T  P+      +     
Sbjct: 23  PRWLLPSILYVLLAVAAYQLSGWLFVNLRGFLGLLFLAWLFSITIEPVVDWLERR-GLRR 81

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  +++    I  L         ++ +L+  +  A          + D       
Sbjct: 82  GLATGLVLLALFVFAIGFLALFGTLLAQQLAQLLKALPGALSSVTDWSNRVFD------- 134

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                          I        +  +             L     ++ +++ +F+   
Sbjct: 135 ------TDFATGEDLIHLTPETVRDLAERFTPGVLGVLSSLLGVVFQMLTLLLFVFYMSA 188

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G ++ + + S            +  I  +      +   I+A    +  G    + GVP
Sbjct: 189 QGPALRRTISSWFPARQQRVISVVWEISVEKAGGYVVSRLILAAISSVATGVFLVVIGVP 248

Query: 240 SHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L + T I++  +P        A+   +       +   + ++G +   I +  L P
Sbjct: 249 YWLPLALWTGIVSQFVPTLGTYLAIALPAIIAAASQPMDGVWVIVFGTVYQQIENYVLHP 308

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +    + +     F  ++ G    G +G  +   ++A+I  + +      +   ++ ++
Sbjct: 309 RITSATVSIHPAVAFGSVIVGASLFGPVGALVSVPVVAVIEALVETYGRRYELVADQPAT 368


>gi|218558557|ref|YP_002391470.1| inner membrane protein [Escherichia coli S88]
 gi|218365326|emb|CAR03047.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   N     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGNMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|194434783|ref|ZP_03067033.1| inner membrane protein YdiK [Shigella dysenteriae 1012]
 gi|194416952|gb|EDX33071.1| inner membrane protein YdiK [Shigella dysenteriae 1012]
 gi|332093944|gb|EGI98997.1| hypothetical protein SD15574_1835 [Shigella dysenteriae 155-74]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFATWVEEVPPPTDQP 355


>gi|229062280|ref|ZP_04199601.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH603]
 gi|228717008|gb|EEL68689.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH603]
          Length = 365

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 121/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   +   +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVSFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAHKVRKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 351


>gi|237653422|ref|YP_002889736.1| hypothetical protein Tmz1t_2759 [Thauera sp. MZ1T]
 gi|237624669|gb|ACR01359.1| protein of unknown function UPF0118 [Thauera sp. MZ1T]
          Length = 368

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 127/356 (35%), Gaps = 9/356 (2%)

Query: 1   MRETMLNP-QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+   ++  Q +        ++  L+ L     P +   +  +   P  +  ++++    
Sbjct: 1   MKPPRVDRLQTVAWTATGAALVALLWLLGPILTPFVVGAVFAYICDPAVNWMVARRV-PR 59

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               ++  +++  L I   L L      E   LV ++    Q        L +   G+  
Sbjct: 60  ALAVLLVILALGLLLIALALILVPMVYREGVLLVRRLPELVQMFNLNVAPLLEARLGVDI 119

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                +  +      I          +  +       GM  L +  +++ + + +F+  +
Sbjct: 120 -----RLNAEQFQQLIADNWTSAQELVPAVLAHLKTGGMAVLGFLANVVLIPLVMFYLLQ 174

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   I  +L+ +    +    K++   +  V+     G   + +   +   +  WLAG+ 
Sbjct: 175 EWPRILDELERIVPRPWVDGTKRVLGDIDSVMSEFLRGQLSVMLLLAVFYSAGLWLAGLN 234

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + +GV+T ++  IP         ++I   LL          + +  A+   +    L 
Sbjct: 235 FWLPVGVLTGLLVFIPYVGFGGGLILAIVAALLQAQGWPPLAGVAIVYALGQVVESFVLT 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P+LVG  I L  L   F L+   +  G +G+ +   + A + V  +E   A   + 
Sbjct: 295 PYLVGERIGLHPLAVIFALMAFGQLFGFVGVLVALPVSAALLVGLREVREAWLASP 350


>gi|295098778|emb|CBK87867.1| Predicted permease [Eubacterium cylindroides T2-87]
          Length = 386

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/362 (13%), Positives = 112/362 (30%), Gaps = 17/362 (4%)

Query: 11  IMRWMIMFIILV-------SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-------- 55
           I+   I+ + ++       ++  +      ++   +I +    + +              
Sbjct: 14  IIGIAILVVCILNLDKVEQTIGVIWNAVKVLVFGGMIAYVLNLVMNRIEKLLEKSKNKFV 73

Query: 56  -EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDI 113
            +       + +   V  +    L  +        + L+  +       I     L  + 
Sbjct: 74  LKIKRVISLLASLCCVALIIYFVLAIVIPTLGQAGQVLIDVLPQYFNDTIKFLSNLFENN 133

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P  +        +        +        N +       +       +  LSIIF I  
Sbjct: 134 PHIVEMINGLEINWKEMIDQTLSFLGNGLGNVLGSTFNMVNIVVNSVFNTILSIIFAIYV 193

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L    R      +  D               +I+ +   S   G  I A   G +  +  
Sbjct: 194 LLDKERFIRLYHRLGDLYLGKDRKDKLTSALKIINQSFGSFIGGQCIEATILGTLCATGM 253

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           +L  +P  + +GV+  ++ +IP        A+ ++++   +   +    ++  I      
Sbjct: 254 YLLNMPYPLMIGVLVGLINIIPMIGAYIGGAIGMFMVFTVDPMMSLGFLVYLCILQQFES 313

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P +VG  + LP +     +V      G+ G+F+G   +A I  + K  I   ++  
Sbjct: 314 NVIYPRVVGSSVGLPGIYVMMTVVVFGSLAGIPGMFLGIPTVASIYKLAKIHIQNKEKEL 373

Query: 354 EK 355
           E 
Sbjct: 374 ET 375


>gi|290509047|ref|ZP_06548418.1| inner membrane protein [Klebsiella sp. 1_1_55]
 gi|289778441|gb|EFD86438.1| inner membrane protein [Klebsiella sp. 1_1_55]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 127/347 (36%), Gaps = 6/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    PQ ++  + + +I++  L+ ++ F      A  +   +WP+              
Sbjct: 6   QPRDIPQILLSVLFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRLLFGKRML 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +  T+ +  LF++P+  L    +     L+  +   N          S    G     
Sbjct: 66  AVLAMTLLLFLLFVIPIALLVNSLVDNSVPLIKLISSGNVTLPDFAWLNSVPLVGDKLYS 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L    S  +            +    A+  G       +    M++     Y  G
Sbjct: 126 AWHGLLDMGGSAIMAKVRPYIGTTTSWFVGQAAHIGK----LLVYCGLMLLFSALLYWRG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++         L          +  + +R+  LG+ + A+ + ++ G    ++GVP  
Sbjct: 182 EQVAYGFRYFATRLAAKRGDAAVLLAGQAVRAVALGVVVTALTQAVLGGIGLAISGVPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+     ++  G  +      I+L   G+    T L +W  +    +D  +RP L+
Sbjct: 242 ALLTVVMIFTCLVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSCVV-GTMDNVIRPVLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 301 RMGADLPMILILTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 347


>gi|288870499|ref|ZP_06114307.2| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288866964|gb|EFC99262.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 377

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 110/337 (32%), Gaps = 2/337 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++  ++++++      L  FF P +   II   + P+      + +      +++  V
Sbjct: 15  NIVIPLLVIWLVCFIGPRLLKFFLPFVIGWIIAMIANPLVKFLEKRVKIVRKHSSMMIVV 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW--LSDIPGGMWASELWTKH 126
           +V+ L I  L F+    + E    V  +    +      +   LS      +  +  +  
Sbjct: 75  AVLALIITLLYFVISKLVSETVGFVGDIPKYYESASIEVQKMLLSVERLLQFLPQGVSDS 134

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++                        A           +  I  I + + F  +   I  
Sbjct: 135 VNQFFGHIGEYLNLAVQKIASPTVTVAGNVVKSIPAALVYTIVTIFSSYLFIVNRDKILD 194

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                       Y+K + + V  ++   FL    I     +VL + + +  V   + + V
Sbjct: 195 FFKKYMPEGGSKYYKYLRKDVRHLVGGYFLAQFKIMFVVAVVLAAGFLVLRVDYALLIAV 254

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I A +  +P     +       + +           L   +   ++ + + P +VG  + 
Sbjct: 255 IVAFLDFLPVLGTGTILVPWAVIRLFSGDTYFALWMLALYVLTQVLRRVIEPKIVGDTMG 314

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L T   L  G +  G+ G+ +   +  L   +++
Sbjct: 315 LDPLATLLFLYLGFKFNGIAGMVLAVPIGMLFLNLYE 351


>gi|239979662|ref|ZP_04702186.1| integral membrane protein [Streptomyces albus J1074]
          Length = 481

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 97/309 (31%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      ++AL++     P  ++   +          +  V
Sbjct: 111 RLLVLAGTLWVLMKVIVSVQLVVFAFIAALLVTALLQPTVTAL-RRMGMPRGAATAVTAV 169

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  +  L S+V                     W          
Sbjct: 170 LGFVIMGLVGWFVVWQVMENIDTLASQVQDGIDELR------------GWLLNSPFHVTE 217

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         + +         + ++    ++  + +  F   DG  I +  
Sbjct: 218 DQINDIAKTLRDAVGTNTEELTSAGLEGVTVLVEVLTGMVLAMFSTLFLLYDGKRIWRWT 277

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L                 + + +   G  ++A+ + + +G   W   VP  V L V  
Sbjct: 278 LNLVPAQARPGIAGAGPRAWRTLTAYVRGTVMVALIDAIFIGLGLWFLDVPMAVPLAVFI 337

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +F A  + +       I    L+PF++G  +++
Sbjct: 338 FLFAFIPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRV 397

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 398 HPLAVVLSV 406


>gi|205352916|ref|YP_002226717.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272697|emb|CAR37611.1| lipoprotein [Salmonella enterica subsp. enterica serovar Gallinarum
           str. 287/91]
 gi|326627989|gb|EGE34332.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 372

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/358 (18%), Positives = 136/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP LP   G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLPILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|168208880|ref|ZP_02634505.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712888|gb|EDT25070.1| putative membrane protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 377

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 108/329 (32%), Gaps = 8/329 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMCLFI 75
            LY   G   P +  + I F                        +F   +  +  +    
Sbjct: 34  FLYKFLGIIKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFILAIT 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLK 134
           + +LF+    +  +  L++ +                +        +     L +     
Sbjct: 94  LFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMWKEI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   + +    + ++  F        +++ LS+I  I  L         +   + +    
Sbjct: 154 LKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAFVSK 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++ ++  ++     LG    A+  G++      +  +P  + + V+  + A+I
Sbjct: 214 NKADRIIELGKMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVTALI 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P       T  S ++++  +   A    ++  +   +    + P +VG  I L  L   F
Sbjct: 274 PVFGAFLGTIPSAFIILIMDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALWVMF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++ G    G++G+ IG  +  ++  I K
Sbjct: 334 AMIVGGSLFGIIGMLIGIPIFGVVFKILK 362


>gi|304407429|ref|ZP_07389081.1| sporulation integral membrane protein YtvI [Paenibacillus
           curdlanolyticus YK9]
 gi|304343380|gb|EFM09222.1| sporulation integral membrane protein YtvI [Paenibacillus
           curdlanolyticus YK9]
          Length = 371

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 117/354 (33%), Gaps = 10/354 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +GI   +++ + ++++ ++     P L   I+ +   P+     SK          
Sbjct: 7   MRAWRGIFVAVMLVLFVLAVMYVTPLVYPFLIGWILAYALNPLIRFLQSKARLPRWLAVT 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-- 122
           ++ +  +   +  +  L    + E+  L   +                 P          
Sbjct: 67  LSLLLFVTAAVTIVSALITRIVAEIIHLSQSINGTINWWRDEFNKFIATPEMQDLINKIS 126

Query: 123 --------WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                   + + +++  +          ++ + +     S   +   +    ++ ++++ 
Sbjct: 127 AFYNENPKYQQPINNKIADTANLLAQTSSDLVTYFFNGLSNLLISLPNVLTIMVVVLLSS 186

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FF  +D    S  L              +   + K +        I+     +V+     
Sbjct: 187 FFIGKDWHKHSATLGGWLPEGIRKSMATVWTDLQKALFGYLRSQFIMISITAVVVIIGLL 246

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L GV   + +G++  ++ ++P     +     I         +           + +  +
Sbjct: 247 LLGVQYAITIGLLIGLVDLLPYLGVGAVMVPWIAYTFLYGDLSLGIGLSILYGVILVARQ 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            + P ++   + L  LPT   +  G++  G+LGL IGPV + ++    + ++  
Sbjct: 307 MIEPKVLASSVGLDPLPTLIAMFVGLKLFGVLGLIIGPVSLVILFAFHRANVFR 360


>gi|257452512|ref|ZP_05617811.1| permease [Fusobacterium sp. 3_1_5R]
 gi|317059053|ref|ZP_07923538.1| permease [Fusobacterium sp. 3_1_5R]
 gi|313684729|gb|EFS21564.1| permease [Fusobacterium sp. 3_1_5R]
          Length = 373

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 107/327 (32%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            FF P++ A+ +    +P+      K         ++  + +     + +L +       
Sbjct: 38  SFFIPLIWAMFLSILLYPLQKFLEEKLHLKRELALIVVLILLGLCVSLFMLTVIPQVSKS 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +KEL        +        +  +        +    +    S                
Sbjct: 98  IKELQQIYPYMEKRVGEFLDKILSLLHKQGLLLMNETEIMKAISEYTQDNIQKIQQIGIS 157

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I            ++ + +      L         I + +    +        +I R   
Sbjct: 158 IFWNVFDVTFGLANFFIGLFLACFILLKPEDFVKVIERVIYLNVKKEKALNIIEILRKSK 217

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +  +  +G  +++I   L++    +L   P  V   ++  +  MIP    +  + VS +
Sbjct: 218 DIFLNYVVGRLLVSIIVALIVFLILFLTKTPYPVLTALLFGVGNMIPYLGVLGASIVSGF 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++    +    L     +   +    + P +VG  + L        ++   + MG+ G+
Sbjct: 278 LILIFAPYKIGYLIFAIILSQALDGFIIGPKIVGDKVGLNSFWVVVAILLCGKLMGIAGM 337

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
           F+G  +  +I +I++E   A  E +++
Sbjct: 338 FLGVPIFCIIKLIYQEKWRAYVEKEKE 364


>gi|262204300|ref|YP_003275508.1| hypothetical protein Gbro_4482 [Gordonia bronchialis DSM 43247]
 gi|262087647|gb|ACY23615.1| protein of unknown function UPF0118 [Gordonia bronchialis DSM
           43247]
          Length = 390

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 106/351 (30%), Gaps = 14/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++     F++L      +    PV  A++      P+  +   +     +   +   V
Sbjct: 14  RLLIIAAAGFVLLRLFTEFEEVLVPVALAILGSAMLVPVVDALDRR-GVPRSLAVLGVIV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L F+    +  + EL  +V +                   W  +      S
Sbjct: 73  VALGILAAVLTFVVREFIRGVPELADQVRVTVDRTKQ------------WLVDGPLHVDS 120

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       +  N  D +   A        +     +  +  L FF   G  I + L
Sbjct: 121 EQVRNAGSDVLNVVQNNQDKVTSGALATATTASEIVTGALLTLFLLIFFLYGGGQIWRFL 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    +            +        ++A+ + + +G    +  VP  + L  + 
Sbjct: 181 VKGVPSGTRSRVWAAGIAGFGTLVGYVRATVVVALVDAIGIGIGLAILRVPLALPLASLV 240

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +   T   +  L+      A          + +    L+PFL+G  ++L
Sbjct: 241 FLGAFIPIVGALLSGTLAVLVALVTQGWIAAVITLAIVIGVMQLESHVLQPFLLGRSVRL 300

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +     +  G+ + G++G  +   L+A +    +       E    I S
Sbjct: 301 HPVAVVLAIAAGLVSAGIIGGLLAVPLIAFLNTAIRHLSADEDEPSAAIDS 351


>gi|218548074|ref|YP_002381865.1| permease [Escherichia fergusonii ATCC 35469]
 gi|218355615|emb|CAQ88226.1| putative permease [Escherichia fergusonii ATCC 35469]
 gi|324112983|gb|EGC06959.1| hypothetical protein ERIG_02588 [Escherichia fergusonii B253]
 gi|325496477|gb|EGC94336.1| permease [Escherichia fergusonii ECD227]
          Length = 353

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +      +   S    S + 
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTARLES-IGCSRSL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + ++    +      +   L+  +             L      +    
Sbjct: 69  ATSLVLIVFVGILLLMAFVVLPIVWQQGIYLIRDMPGMLNKLSDFAATLPRRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +        +      +  D + +F+    +  L   + ++ + + +FF  +D 
Sbjct: 125 ----MDAGIIDAMAENMRTRMLSISDSVVKFSLASLVGLLTLAVYLVLVPLMVFFLIKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+     + L G+   
Sbjct: 181 QQMLNAVRRVLP-RNRGLAGQVWQEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T     + L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVCVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDG 348


>gi|323978175|gb|EGB73261.1| ydiK protein [Escherichia coli TW10509]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKLRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|257066949|ref|YP_003153205.1| hypothetical protein Apre_1463 [Anaerococcus prevotii DSM 20548]
 gi|256798829|gb|ACV29484.1| protein of unknown function UPF0118 [Anaerococcus prevotii DSM
           20548]
          Length = 407

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/368 (11%), Positives = 113/368 (30%), Gaps = 23/368 (6%)

Query: 15  MIMFIILVSLYFL----------KGFFAPVLSALIIGFTSWPIYSSFISKKEES------ 58
            ++ +I    +++               P++  L+I F      + F  K          
Sbjct: 19  FLLILIFFGFWYIDSVKGLLLTTYSVLRPIVYGLVIAFIINLPMNFFQEKLFCRFIDKDK 78

Query: 59  -----STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP--RWLS 111
                S    ++A +    +  + L  L       +  L+  + +     I     + L 
Sbjct: 79  HRKLISVLSLLLAWIIFFAVVTLILTVLIPELANAITSLIDNIPVFFDRLIEYLNNQRLF 138

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
                  ++++ + ++ +  S             +       +      +   +  IF  
Sbjct: 139 KEVSAEISAKINSLNVDNLTSELRKFLDGKNWGFVSKTSSILNSVSQTIITIVMGFIFSF 198

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                      + ++ + +  E         I+++             +  +  GL+   
Sbjct: 199 YVSLNKKTLQTNTNKIILANFEEEKVKQINYIAKLSYNSFARFLETKLLSCLSLGLICFI 258

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
              +  +P    + ++     +IP   PI  T V + L+   +   +    ++      +
Sbjct: 259 GMLILRLPMPAMISILVGAFDIIPYFGPIIATGVGMILIFIQSPAQSLVFLIFVLAIQQV 318

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  + P ++G    LP +  F  +  G    G+ G+ +   +  +I  + ++S     +
Sbjct: 319 QESIIYPLVIGKHQGLPAIWIFLSVFVGGGLFGIFGMLVSMPIATVIYTLVEDSTKRKLK 378

Query: 352 NKEKISSN 359
            KE    +
Sbjct: 379 TKEISEED 386


>gi|187780241|ref|ZP_02996714.1| hypothetical protein CLOSPO_03837 [Clostridium sporogenes ATCC
           15579]
 gi|187773866|gb|EDU37668.1| hypothetical protein CLOSPO_03837 [Clostridium sporogenes ATCC
           15579]
          Length = 366

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 97/306 (31%), Gaps = 1/306 (0%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P+   F  + +   +   +I  V  + +  + L  +       + ++   +      G
Sbjct: 60  LNPLVKFFERRFKIKRSLSILICYVITLGIVALVLSMIVPKVFQSIMDIFQNIPYFTNKG 119

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
             +   L                  + + L      F  + G++ I      F    ++ 
Sbjct: 120 YEMVNNLLANEEISNIINSSNVFKGNYKDLIDKIAGF-TSVGLNTILNQTISFTTFMVNL 178

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              +I  I  L    +  ++  + +  +    +     +  R V  +I+       + ++
Sbjct: 179 VFGLIIAIYVLNDREKFEYNGKRVVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKALDSL 238

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GL+      +   P  + + +I  +  MIP   P      ++ + +      A  + +
Sbjct: 239 IIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALWVLI 298

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  +        L P LVG  + L       G+  G    G+ G+ +    MA+I +   
Sbjct: 299 FLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVIKIYTT 358

Query: 344 ESIMAI 349
           +     
Sbjct: 359 KLAEKY 364


>gi|154496526|ref|ZP_02035222.1| hypothetical protein BACCAP_00818 [Bacteroides capillosus ATCC
           29799]
 gi|150274159|gb|EDN01250.1| hypothetical protein BACCAP_00818 [Bacteroides capillosus ATCC
           29799]
          Length = 415

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 109/335 (32%), Gaps = 11/335 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK----------KEESSTFLAVIATVSVMCLFIVPLLFL 81
            P+L    + +    + S +             ++       + A +++    I+ L  +
Sbjct: 81  TPLLLGCALAYVLNILMSFYERHYFTHSVSPAIRKSRRPVCMLAAFITLAAGLILILNLV 140

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                  +  L+ ++  A          +  +P  +  + L     +      I   T  
Sbjct: 141 LPELFSCVNLLLRQIPPAANSLANWLGTMDAVPEDL-LASLRNVDWASKLEQIISFLTTG 199

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             N I       S      +    ++IF I  L    R G   ++ +         +   
Sbjct: 200 VGNIIGTAVSAVSSVFSGLVTAFFALIFSIYLLLGKERLGSQFNRIIKRYMSTGLCSNVH 259

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +  ++ +      +G    A+  G +      +  +P     G + A  A+IP      
Sbjct: 260 HVLSVLNECFHKYIVGQCTEALILGGLCTLGMLILQLPYATMTGAVIAFTALIPVAGAYI 319

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V  ++++  +   A    ++  I   +    + P +VG  + LP +     +  G  
Sbjct: 320 GAGVGAFMILTVSPIKAIIFLIFIVILQQLEGNLIYPRVVGSSMGLPGIWALAAVTVGGG 379

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            MG+ G+ +   L A +  + +E +  I   +E +
Sbjct: 380 VMGIPGMLLCVPLAAAVYKLLREDVNRIPNKEEAL 414


>gi|291516366|emb|CBK69982.1| Predicted permease [Bifidobacterium longum subsp. longum F8]
          Length = 504

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 109/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAVIVFMFCWRSWGDISYLVLDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +    +         +            T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYEQIREFVDQYA------------T 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTAYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|293410002|ref|ZP_06653578.1| inner membrane protein [Escherichia coli B354]
 gi|291470470|gb|EFF12954.1| inner membrane protein [Escherichia coli B354]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 135/356 (37%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVGQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|284165585|ref|YP_003403864.1| hypothetical protein Htur_2311 [Haloterrigena turkmenica DSM 5511]
 gi|284015240|gb|ADB61191.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 393

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 125/343 (36%), Gaps = 15/343 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             Q  +  + +  I++ L  +  +   VL  +++ +   P+      +        A ++
Sbjct: 12  VEQPALTALALIAIVLGLLIVLPYLQYVLFGVVLAYILLPLQKRLEER--VRPMIAAFVS 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + + ++PLL++      +   LV  +         +   L+D    +  + L+   
Sbjct: 70  VIVALLVIVIPLLYILSVAFQQSTLLVEAIREGEIDLQMIEGALADRGYPVDLTGLYES- 128

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                           + G+  +   A           + +   +   F   RDG  +  
Sbjct: 129 -----------YQDAISTGLRGLANNALDIVGGLPGILIGLTITLFVCFALLRDGDRLID 177

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  +         +++   +  +++++ +   ++A  + ++LG    + G+P+ V L V
Sbjct: 178 WLYRVVPID-DEIQRELFTELDHLMQASVISNVLVAAIQAVMLGVGLAVLGIPAVVLLTV 236

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T ++ ++P              L+      A        + + + D  LRP L+G    
Sbjct: 237 LTFVLTLLPLVGAFGVWLPVSIYLVAIGRPVAAAALAVYGLFVTVSDTYLRPALIGRTSA 296

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +       G+ GG+ T G +GLF+GPV++    V+        
Sbjct: 297 INSAIIVVGIFGGLITFGAVGLFVGPVVLGGAKVVLDIFARER 339


>gi|269960287|ref|ZP_06174661.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834898|gb|EEZ88983.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 383

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 56/350 (16%), Positives = 132/350 (37%), Gaps = 5/350 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +I+ +++ +   +K F  PV+   II     PI               A  
Sbjct: 17  MVESAIRIGLILVLLMFTYDIIKPFILPVIWGAIIAVALMPICKKLAKVYGGKRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + PL+ +    +      +  +   +         +++ P           
Sbjct: 77  IALLGIALLVTPLVMVSGSIVDGATHALDVLQSGDIKIPGPKPSVAEWPLVGDKLYEVWT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I +       G+  +           L   +S+         F     S++
Sbjct: 137 LFATNLEKAIQTFMPQIKAGLTSLLGMVGGALGSLLLSIISLAIAAG----FMTYSESLA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L 
Sbjct: 193 SGLKTIAVRTAGDNAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+ +    A ++   V  Y+ +  +   AT   +W  +   + +   +P L+G  +
Sbjct: 253 LVLMILCIAQLPALLAVLPVVGYMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +P      G +GG+   G++GLF+G V++A+   ++   +   K  +++
Sbjct: 312 DVPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLNIEKAQQQQ 361


>gi|74311987|ref|YP_310406.1| putative inner membrane protein [Shigella sonnei Ss046]
 gi|73855464|gb|AAZ88171.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323169258|gb|EFZ54934.1| hypothetical protein SS53G_0428 [Shigella sonnei 53G]
          Length = 370

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 135/356 (37%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++      ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGSIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|327393717|dbj|BAK11139.1| UPF0118 inner membrane permease protein YdiK [Pantoea ananatis
           AJ13355]
          Length = 376

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 67/356 (18%), Positives = 143/356 (40%), Gaps = 8/356 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+  L         I+ +I   L+ ++ F      A ++   +WP+            + 
Sbjct: 16  RQIDLPQMLFTLIFILLLIAACLWVVQPFILGFAWASMVVIATWPLMLKIQRLLWGRRSL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWAS 120
             ++ T+ ++ LFI+P+  L    +     +++       H +P   WL+DIP  G    
Sbjct: 76  AVIVMTILLLLLFIIPVALLVNSLIDNSAPVIAWATQG--HMLPTLSWLNDIPMVGEKLY 133

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + K ++   +  +            F    A  FG   +   + ++F ++  +     
Sbjct: 134 ASYQKLVAGGGAAIMAKLQPYVGRTTGFFVAQAGHFGRFMIHLAVMLLFSVLLYW----R 189

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   +Q +      +          +  + +R+  LG+ + A+ +G++ G    ++G+P 
Sbjct: 190 GEQAAQGIRHFAWRMAGRRGDAAVLLAGQAVRAVALGVVVTALVQGVLGGIGLAVSGIPY 249

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G  +      +YL   G+    T L +W  +   + D  LRP L
Sbjct: 250 ATLLTVLMILCCLVQIGPLLVLVPAIVYLYWSGDTTWGTVLLIWSCVVGTL-DNILRPVL 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPV++A+   +    +  +   +   
Sbjct: 309 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWMHEVPAPQADP 364


>gi|83594849|ref|YP_428601.1| hypothetical protein Rru_A3520 [Rhodospirillum rubrum ATCC 11170]
 gi|83577763|gb|ABC24314.1| Protein of unknown function UPF0118 [Rhodospirillum rubrum ATCC
           11170]
          Length = 434

 Score =  122 bits (307), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 119/334 (35%), Gaps = 14/334 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+ +   + ++  +   ++LV LYF +    P++ AL++     PI    + +++    
Sbjct: 74  LRQQLTTVRWLLTGLFAMMLLVFLYFGRDVLMPIVLALLLALMLSPIV-RLLRRRKVPEG 132

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV+ T+     F   +L + +     +   +       +        L +    +  +
Sbjct: 133 VAAVVVTLG----FAAGMLLIGFTISGPVATWLEDAPSIGKRIAHKLSSLRESFDVVLDA 188

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +  +   S        +        P    +          +    I+   FF   
Sbjct: 189 SRQVEEAADTSSKDNTDRVVMAQ------PGLLVKAADSLASGFTTFGVTIVITLFFLAS 242

Query: 181 GFSISQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G   ++++  +           ++ R +   + S  L + +I  G G+ +G A WLAG+P
Sbjct: 243 GSMFTEKIVHVMPLFRDKLRVLRVVRDIETEVSSYLLTVAMINAGLGVAVGCALWLAGMP 302

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +    G +  ++  +P    +   ++   +  +   ++  A    L       +  + L 
Sbjct: 303 NAFLWGGMAMVLNFLPYIGSMIGISLVALVSFVTFDSLGQALIPPLSYLAVTSVEGQFLT 362

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           P +VG  ++L  L     ++      G++G  I 
Sbjct: 363 PAIVGRRLELNALSVMLAVLFWAWLWGIVGALIA 396


>gi|26247938|ref|NP_753978.1| putative inner membrane protein [Escherichia coli CFT073]
 gi|110641809|ref|YP_669539.1| putative inner membrane protein [Escherichia coli 536]
 gi|191171652|ref|ZP_03033199.1| inner membrane protein YdiK [Escherichia coli F11]
 gi|218689630|ref|YP_002397842.1| putative inner membrane protein [Escherichia coli ED1a]
 gi|218699747|ref|YP_002407376.1| putative inner membrane protein [Escherichia coli IAI39]
 gi|227885892|ref|ZP_04003697.1| inner membrane protein [Escherichia coli 83972]
 gi|300938988|ref|ZP_07153686.1| hypothetical protein HMPREF9530_03822 [Escherichia coli MS 21-1]
 gi|300987762|ref|ZP_07178340.1| hypothetical protein HMPREF9553_03359 [Escherichia coli MS 200-1]
 gi|300994853|ref|ZP_07180966.1| hypothetical protein HMPREF9531_05248 [Escherichia coli MS 45-1]
 gi|301050981|ref|ZP_07197827.1| hypothetical protein HMPREF9549_04881 [Escherichia coli MS 185-1]
 gi|331673244|ref|ZP_08374012.1| putative permease [Escherichia coli TA280]
 gi|26108341|gb|AAN80543.1|AE016761_118 Hypothetical protein ydiK [Escherichia coli CFT073]
 gi|110343401|gb|ABG69638.1| hypothetical protein YdiK [Escherichia coli 536]
 gi|190907982|gb|EDV67574.1| inner membrane protein YdiK [Escherichia coli F11]
 gi|218369733|emb|CAR17504.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
 gi|218427194|emb|CAR08080.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|227837465|gb|EEJ47931.1| inner membrane protein [Escherichia coli 83972]
 gi|281178758|dbj|BAI55088.1| putative transport protein [Escherichia coli SE15]
 gi|284921609|emb|CBG34681.1| putative membrane protein [Escherichia coli 042]
 gi|300297358|gb|EFJ53743.1| hypothetical protein HMPREF9549_04881 [Escherichia coli MS 185-1]
 gi|300306050|gb|EFJ60570.1| hypothetical protein HMPREF9553_03359 [Escherichia coli MS 200-1]
 gi|300406193|gb|EFJ89731.1| hypothetical protein HMPREF9531_05248 [Escherichia coli MS 45-1]
 gi|300456091|gb|EFK19584.1| hypothetical protein HMPREF9530_03822 [Escherichia coli MS 21-1]
 gi|307553709|gb|ADN46484.1| predicted inner membrane protein YdiK [Escherichia coli ABU 83972]
 gi|315290535|gb|EFU49909.1| hypothetical protein HMPREF9544_05061 [Escherichia coli MS 153-1]
 gi|320195417|gb|EFW70042.1| Putative membrane protein [Escherichia coli WV_060327]
 gi|324007042|gb|EGB76261.1| hypothetical protein HMPREF9532_03276 [Escherichia coli MS 57-2]
 gi|324011447|gb|EGB80666.1| hypothetical protein HMPREF9533_04541 [Escherichia coli MS 60-1]
 gi|331069442|gb|EGI40829.1| putative permease [Escherichia coli TA280]
          Length = 370

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 136/356 (38%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|331090805|ref|ZP_08339652.1| hypothetical protein HMPREF9477_00295 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330399913|gb|EGG79572.1| hypothetical protein HMPREF9477_00295 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 420

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 106/357 (29%), Gaps = 17/357 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---------------SKKEESSTFLAV 64
           I   L  + G   P++  L+  +   P+ +                    ++ S +    
Sbjct: 48  IAGLLGKIGGILQPIILGLVFAYLLNPLVTIIENQVIKMFEKKAKNREKLRKVSRSIGIA 107

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR--WLSDIPGGMWASEL 122
            + +    + I+ L  +       +++L+  +     + I       + D         +
Sbjct: 108 GSLLVAFAVVILLLNMVIPELYRSIRDLIMGLPHQINNAIDFLESEKIHDTAFSGTIKSV 167

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   Q              + F+            D  + +I  +  L    +   
Sbjct: 168 LENGAEAFQMWLKTDLLTRINQMMSFVTVGVFSVVETLFDIAVGVIVSVYVLNSKEKFTG 227

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +   +L          +I+R   K+     +G  I +I  G++      +  +P  +
Sbjct: 228 QCKKITYALLSRERANLMLQITRKSHKIFGGFVIGKIIDSIIIGILCFIGLSILDIPYTL 287

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + VI  +  ++P   P      S  L++           ++  +        L P ++G
Sbjct: 288 LVSVIVGVTNVVPFFGPYIGAIPSAILILLSEPIKGIYFVIFILVLQQFDGNILGPKILG 347

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               L      F ++ G    G +G+ +G    A+   +    I    E K+    +
Sbjct: 348 DSTGLSAFWVVFSILLGGGLFGFVGMIMGVPTFAVFYYLVSMFIEQKLERKKLPKES 404


>gi|323941248|gb|EGB37433.1| hypothetical protein ERDG_02162 [Escherichia coli E482]
          Length = 353

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFATTLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 353


>gi|237807694|ref|YP_002892134.1| hypothetical protein Tola_0920 [Tolumonas auensis DSM 9187]
 gi|237499955|gb|ACQ92548.1| protein of unknown function UPF0118 [Tolumonas auensis DSM 9187]
          Length = 358

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 113/351 (32%), Gaps = 12/351 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P  +  + ++      +YF     APVL+AL+I +         +         
Sbjct: 10  RRRFSDPNAVTLFWLLVGGFTVIYFYGDILAPVLAALVIAYLLEWFVQRLM-HIGLGRKA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            + +  +  + L ++    +      +   LV +V     +     + L  +   +  S 
Sbjct: 69  ASTLVVLLFIGLMLLVGFGILPIVFRQGMTLVKEVPTMLANATEYLKKLPQLYPELVDSS 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L     S  Q   + +           +  F+    M      + ++ + + +FF  +D 
Sbjct: 129 LVDSLSSVIQDRLLTN--------SGVLVSFSFASLMNLAVVLVYMVLVPLLIFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S+         +       ++   + + I +   G  I  +    V  + + L G+   
Sbjct: 181 DSLLVMTKRFLPY-NRELVIRVWLEMNEQIANYIRGKVIHILVVSAVNYAVFALMGINYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + LG+   +  +IP    ++ T   I   L   G       L L   I   +    L P 
Sbjct: 240 LLLGISVGVSVLIPYIGAVAVTIPVIVVALFQWGVSPEFAYLMLAYTIVQTLDANILTPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L    + L  +     ++      G  G+F    L  L+  +      + +
Sbjct: 300 LFSEAMNLHPIAIILAVLIFGGFWGFWGVFFAIPLATLVKAVVNSWPGSSR 350


>gi|183984335|ref|YP_001852626.1| hypothetical protein MMAR_4364 [Mycobacterium marinum M]
 gi|183177661|gb|ACC42771.1| conserved hypothetical transmembrane protein [Mycobacterium marinum
           M]
          Length = 385

 Score =  122 bits (307), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 131/347 (37%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+ +  +  + +  +L   YFL+ +F  ++ A +  +   P+++ F  +   ++   A +
Sbjct: 7   LSQKRALAIVTLAALLFGAYFLRSYFVLIVVAAVGAYLFTPLFNWFNKRL--NAGLSATL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             ++ + + IVP+  L    ++++  +V  +    +   +      +        + +  
Sbjct: 65  TLLTALVVVIVPVGLLVGLAVVQIARMVENIAGWVKTTDLSSLGDKALQLVNELLARVPF 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H++            +  N   ++  F             S I  +        +   +
Sbjct: 125 LHVTVTAEALRKMMISVAQNVGQWLLHFLQNAAGSLAGAVTSGIIFLYVFMALLLNREKL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS-HVA 243
              +  L   L         R +  ++R T +G  +IA+ +G+   ++ ++AG       
Sbjct: 185 RTLIGQLNP-LGEEVTDLYLRKMGSMVRGTVIGQFVIALCQGVAGAASIYVAGFHHGFFI 243

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             ++   M++IP G  I      I +   GNI     + LW  + +  +D  LRP LV  
Sbjct: 244 FAILLTAMSIIPLGGGIVTIPFGIGMAFYGNIGGGAFVVLWHLLVVTNIDNFLRPILVPR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 304 DARLNSALMLMSVFAGIGMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|49187485|ref|YP_030738.1| hypothetical protein BAS4490 [Bacillus anthracis str. Sterne]
 gi|165869655|ref|ZP_02214313.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0488]
 gi|167638139|ref|ZP_02396417.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0193]
 gi|170705406|ref|ZP_02895870.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0389]
 gi|177651155|ref|ZP_02933986.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0174]
 gi|190569043|ref|ZP_03021943.1| sporulation integral membrane protein YtvI [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817381|ref|YP_002817390.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CDC 684]
 gi|229603687|ref|YP_002868875.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0248]
 gi|254736704|ref|ZP_05194410.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Western North America USA6153]
 gi|254754661|ref|ZP_05206696.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Vollum]
 gi|254757493|ref|ZP_05209520.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Australia 94]
 gi|49181412|gb|AAT56788.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|164714484|gb|EDR20003.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0488]
 gi|167513956|gb|EDR89324.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0193]
 gi|170129531|gb|EDS98394.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0389]
 gi|172082981|gb|EDT68043.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0174]
 gi|190559825|gb|EDV13810.1| sporulation integral membrane protein YtvI [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005027|gb|ACP14770.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CDC 684]
 gi|229268095|gb|ACQ49732.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0248]
          Length = 372

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLVFVIVATVAGFYALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 191 NDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 311 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|46199976|ref|YP_005643.1| permease [Thermus thermophilus HB27]
 gi|46197603|gb|AAS82016.1| permease [Thermus thermophilus HB27]
          Length = 365

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 110/332 (33%), Gaps = 4/332 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL--FYY 84
                + +L+A    +   P+  +   ++   +  + ++  +  + L +   L       
Sbjct: 33  AWPALSVLLTAFAFAYLVHPLVQALERRRLPRAVGVVLVYLLLGLFLALASFLAAQTVVE 92

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
                ++L   +       + +P     +P       +  +   + + L       L   
Sbjct: 93  LSRLARDLPRLLDPLLAWLVALPDRAQAVPVPESLRPVLEELTRNLRGLLQGFLEALVRW 152

Query: 145 GIDFIP--RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +        F    L     +   +I   +F  D   + +   ++    +    + 
Sbjct: 153 LQGLLAQGGSLLGFFTSLLGGVFQLFTALILSVYFLYDLPRLGRAALAVFPEPYQPLAQD 212

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           ++  +   +     G  ++A+  G ++G  +WL GVP   +LG +  +  +IP    +  
Sbjct: 213 LAAKLNASVGGYVRGQLLVALCVGFLVGLGFWLVGVPLAASLGFLAGVFNLIPFVGVVVS 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ L   G +  A    L       +    L P +VG   +L  +     ++ G   
Sbjct: 273 GVPALLLAATGGLGKAALALLVMVAANQLEAHVLGPLIVGRATRLHPVTAIAAILTGGTL 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            GL G  +     A + V+ ++     +  +E
Sbjct: 333 FGLWGALLAVPAAAFLKVVLEDYYKGSRFYRE 364


>gi|222529321|ref|YP_002573203.1| hypothetical protein Athe_1330 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456168|gb|ACM60430.1| protein of unknown function UPF0118 [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 351

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 113/352 (32%), Gaps = 10/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +   I    I+     ++        P L AL + +   P      +K   S   
Sbjct: 8   KRYFTDILFIALIAIVIYFFTNMKAFWPILIPFLIALFLSYLLKPCVDFLETKIR-SRDI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I+   +  + I+  ++     + E K+L+  +                         
Sbjct: 67  SILISFAIIFGITIMVFVYFIPLFVSETKQLIQNIPDYIILIQKWF---------FEIDS 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L+      + + +                         L  + + I  F+  RD 
Sbjct: 118 KLLNKLNIDIKEILNANSINIEGISKQTLSIFLNIVKSISSNILYYLLIPIISFYILRDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L    +      I   + +V+     G  + A   GL+    + L  V   
Sbjct: 178 KRLVMWIKWLLPEKYRKEGLYIFVDINRVLHQYIRGQLLDAFIVGLLSFVGFSLLSVRYA 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +    + P ++
Sbjct: 238 ALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVIFLVLLQQVDSFIISPRVI 297

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 298 GSKVGLHPLTIIIVIILANKIFGFIAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|323142306|ref|ZP_08077138.1| hypothetical protein HMPREF9443_01937 [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413190|gb|EFY04077.1| hypothetical protein HMPREF9443_01937 [Phascolarctobacterium sp.
           YIT 12067]
          Length = 356

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 119/351 (33%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             +      +  ++  I   LY + GF  P+L A+ + F  +P+ ++    +        
Sbjct: 6   PQIRKSTFFKLGVVTAISYVLYLMAGFLLPLLLAVGLAFALYPLVNAIAQVRMAHGMIKL 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
                 ++ L    +      G + +           +      +        M      
Sbjct: 66  SRVVAIILALMAFCIFIFMIIGFIILPLFGQMNEFLQKLPALAVKSNLQDLDSMLKDPST 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L    ++ +          +  + R   +  +  +   + +I +    F+F +D   
Sbjct: 126 IPLLPSDFNMLVNGLLNWAMGFVGTVLRNLVQSSLGIVQSLIGLIIVPFLAFYFLKDWRE 185

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   + +L  +       ++   + + + +   GM  +++  G V+       G+   + 
Sbjct: 186 LRLMVINLFNYDAQEKAAEVVDEIGRTMSAYVRGMGKLSLISGFVITIGTAFLGIDFPLV 245

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG    +   +P   P+     ++++        A  + L+  +   +    + P L+G 
Sbjct: 246 LGFWAILAETVPVVGPLMGAVPAVFIAYGQAPEAAFHVALFYLVYYQLDANFIMPKLMGQ 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            I L  +     L+ G +  G+LG+     + A+  V++K+   A +  + 
Sbjct: 306 KIDLHPVVLIISLLIGAKLFGILGMVFAVPVAAVYRVLYKQLWHAGEGREN 356


>gi|197118593|ref|YP_002139020.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197087953|gb|ACH39224.1| membrane protein UPF0118 [Geobacter bemidjiensis Bem]
          Length = 355

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 137/340 (40%), Gaps = 5/340 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +  ++ +  I + +        P+  ALIIG  + P Y+  + +  E +   + +  ++
Sbjct: 9   ILAAFLTIAAIALIVLLAVPILKPLAWALIIGIATMPHYNRILKRFPERAGRASGLMVLA 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V    ++P  +L     +   +   +V    Q         S     +   +     +  
Sbjct: 69  VSLCLVLPATWLVVTAAVSAPDWYRQVEQLVQDFSKT---GSGALSQLPFYDRIMGLVQK 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                        ++    +   A+       D   +++  +  LFF YRDG        
Sbjct: 126 FGIDLAGIGQKAASSASTIVLNTATDMVRNLFDLIFTLLVALFLLFFVYRDGERAVSVCI 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +          + ++  +  +  +  +G  +    +G++ G  YW+AGVP+ +  G +TA
Sbjct: 186 AKLAPDQR-RAQHLAAQIRSITTAVTVGTLLTCATQGVLAGLGYWVAGVPAPIFCGALTA 244

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A++P     + +  +   + ++G+  NA  L LW  + + + D  +RP  VG    + 
Sbjct: 245 IAALVPVVGTGVVWVPLVALIAVQGSYLNAVLLALWCILFVGVADNAIRPLAVGASSDVS 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L    G + GV  MG+LGL +GP++ A++  IW + +  
Sbjct: 305 VLAVVAGAICGVVIMGVLGLIVGPLIFAVLFSIWDDVVAE 344


>gi|310828610|ref|YP_003960967.1| Predicted permease [Eubacterium limosum KIST612]
 gi|308740344|gb|ADO38004.1| Predicted permease [Eubacterium limosum KIST612]
          Length = 402

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/384 (13%), Positives = 120/384 (31%), Gaps = 24/384 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-----------LYFLKGFFAPVLSALIIGFTSWPIYS 49
           M  +    + I+  +++ ++L +             F+ G   P +    + F      S
Sbjct: 1   MELSKKTVRTIIGLIVLTLLLAAGLRNFGSVWEAFNFVIGLIFPFILGACMAFLLNIPMS 60

Query: 50  SFISKK------------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
                                     V+A + V+ + ++ +  +       +  L + V 
Sbjct: 61  VIERHLFSEKRVKGPKIRRLVRPLSLVLALLLVLLIIVIVIFIIVPEIANTVGVLANSVP 120

Query: 98  LANQHGIPVPRWLS-DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
              +        L+   P         T   ++  S  +        + +      AS  
Sbjct: 121 DFVKQVEEWATGLAGSYPDIAKQISEITIDWTNFGSEIVDFLQKGLMSFVGSTFNVASSI 180

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               +++ L  IF +  L    + G    +   +           ++ R+      S   
Sbjct: 181 ASGVVNFSLGFIFALYVLLQKEKLGSQFRKLFYAYLPERVTDKLLEVFRLSNSTFSSFVT 240

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G    A+  G +      +  +P  + +GV+   +++IP         V  +L++  N  
Sbjct: 241 GQCTEAVILGAMFVVVMLIFRLPYALMIGVLIGFLSLIPIFGAFIGCFVGAFLILMVNPM 300

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A    +   I   I    + P +VGG + LP +     +  G   MG+ G+ I   L +
Sbjct: 301 QAFWFIVIFLIIQQIEGNLIYPHVVGGSVGLPSIWVLVAVTIGGGAMGITGMIITIPLCS 360

Query: 337 LIAVIWKESIMAIKENKEKISSNF 360
           +   + +E+       +      +
Sbjct: 361 VCYTLLREATGKRLSRRRVPEEKY 384


>gi|294631156|ref|ZP_06709716.1| permease [Streptomyces sp. e14]
 gi|292834489|gb|EFF92838.1| permease [Streptomyces sp. e14]
          Length = 459

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 91/310 (29%), Gaps = 18/310 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +           ++AL+I     P  +    +          +  
Sbjct: 76  WRLLVLAGTVWVLMRVISAVQLVVLAFVAALLITALMQPTVARL-RRHGLPRGPATALTA 134

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +   F+ +  M  +  L +++                     W         
Sbjct: 135 ILGFVIMGLIGWFVTWQVMENIDNLSNQIQDGIDELRK------------WLLNSPFHVT 182

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    S         D I         + ++    I+  I +  F   DG  I + 
Sbjct: 183 DKQINQIAKSLREAIGANTDQITSAGLEGVTVVVEALTGILLTIFSTLFLLYDGRRIWEW 242

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  I+A+ + + +G   +   VP  V L V 
Sbjct: 243 TLKLVPAAARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLNVPMAVPLAVF 302

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    +       +  L+   +F A  + +       I    L+PF++G  ++
Sbjct: 303 IFLFAFIPLVGAVVSGALAVVVALVTQGVFTAVMVLVVVLAVQQIEGHVLQPFILGRAVR 362

Query: 307 LPFLPTFFGL 316
           +  L     +
Sbjct: 363 VHPLAVVLSV 372


>gi|229198517|ref|ZP_04325221.1| hypothetical protein bcere0001_40450 [Bacillus cereus m1293]
 gi|228585020|gb|EEK43134.1| hypothetical protein bcere0001_40450 [Bacillus cereus m1293]
          Length = 361

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPVVIKQLQ 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 108 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 338 SVPVLAVIRTVI 349


>gi|224824021|ref|ZP_03697129.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
 gi|224603440|gb|EEG09615.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
          Length = 350

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 136/339 (40%), Gaps = 2/339 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +  +   + L   + L  F+  +   + + F   P++   +   +  +   A I
Sbjct: 3   LYRRYFVIVVAALVALALYWMLVPFWGALAWGICLAFLLAPVHGWLMRVLKGRAGLSAGI 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
            TV V  +   P+  L      +  +LV+ +          +   L   P     +E   
Sbjct: 63  ITVLVPVVLAGPVFSLGVAFANQFADLVTHLQKQPLRIDANLLTQLERYPLVGSLAEWLR 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+                 +  +      F +  L   +    M+  LFF  RDG  +
Sbjct: 123 QKLTATNEQLQGWLVSSAQMLLQSLASTGGSFVLSALGTIVHFFMMLFLLFFLLRDGRQL 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +   L     P    K+ ++V    R+   G  + AI +G ++G  + +AG+PS V  
Sbjct: 183 LNRAVRLVPMQ-PQRRSKLLKLVGNTTRAVVYGTGLTAIAQGALVGIGFAIAGLPSAVVF 241

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+ AI+A++P G        ++  L+  + +      L     + + D  LRP L+   
Sbjct: 242 GVLAAILALLPIGGTALVWVPAVGTLVATSQWGWAIFMLIWGAGVTVSDNLLRPLLISSQ 301

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +  L  F G++GG+   G++G+ IGPVL+ +IA + +
Sbjct: 302 EPVSILVVFVGVIGGLSAFGMIGVIIGPVLLTVIAALLR 340


>gi|170767574|ref|ZP_02902027.1| permease PerM [Escherichia albertii TW07627]
 gi|170123908|gb|EDS92839.1| permease PerM [Escherichia albertii TW07627]
          Length = 353

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 106/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPVAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLSMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMVVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDG 348


>gi|298245661|ref|ZP_06969467.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297553142|gb|EFH87007.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 439

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 93/324 (28%), Gaps = 14/324 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I       L         +L ++ + F   P+ +  +           ++  V V+   
Sbjct: 21  LIFSTTWALLGQFVDAIIILLLSMAVAFLLTPLVNFLVKY-HVPRVVATLLVYVVVLGAL 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 L    + +       +    +               +   +             
Sbjct: 80  GYLSYLLAASLIAQSLAFSDTIQSYAKAIPDNYANFIKYLNDIKIPQ-------KNIDDT 132

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I S           +   A  F  + ++  ++I  +++  F+   DG  I   L SL   
Sbjct: 133 IASVQSKANEFAFTLTNNALSFVTVLVNAFINIFLIVVLSFYLTVDGKRIRDSLVSLSPK 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY---WLAGVPSHVALGVITAIM 251
            F          + +V+ +   G   +A+  G+++G         G    +  GV+  + 
Sbjct: 193 RFLPNVLLFEDALSRVVGNYIRGQLTLALIVGILVGVICAVNPPLG-KYALICGVLAFLF 251

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   P   +   + L +           +         I    L P +VG  + L  
Sbjct: 252 ETIPMVGPALASITPLLLSLLLPDPFPRTLIVAGCFVALQVIESNILGPRIVGHAVGLHP 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPV 333
           +     L+ G +  G+ G  +   
Sbjct: 312 VAAILSLLIGAQLFGVFGALLATP 335


>gi|251794947|ref|YP_003009678.1| hypothetical protein Pjdr2_0912 [Paenibacillus sp. JDR-2]
 gi|247542573|gb|ACS99591.1| protein of unknown function UPF0118 [Paenibacillus sp. JDR-2]
          Length = 371

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 102/324 (31%), Gaps = 6/324 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+       L   F P+L + +  +   P         +       ++  +  + +  + 
Sbjct: 28  FVFNPIGKVLAALFVPLLISGMFYYLFRPFVRLLS--MKLPKVVAILLVYIGAIGICYLF 85

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
              ++     +   LV+               +          +       +  +    S
Sbjct: 86  FWMIWPPIRDQSINLVNNFPQIVASVQTWLESMQQHEWLKEIGQKDALSTENLTNKLTGS 145

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L  +    +         + +++   +  +   +++   +G  +   +  +    F 
Sbjct: 146 LDELLNS----VIGSVRGIFNVIMNFFFLLGLVPFMIYYLLSEGDKLPGHILRMLPERFH 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                  + +   I S  L   + ++  G++    Y L  +P  + LG+I AI   IP  
Sbjct: 202 KEASGALKEIDASIGSFILSKVLTSLLIGVLTFVGYLLIDMPYPLLLGLIAAITNFIPYI 261

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P+     +  + +  +      + +   +   I    + P ++G  + +        ++
Sbjct: 262 GPLIAFIPTAVVALTVSPMTVLLVGVVLIVSNQIEANLIGPRIIGKQMNVHPFTVMLLVI 321

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
           G    +G  G+ I   + A+I +I
Sbjct: 322 GASSIIGAFGMIIVVPVYAIIKII 345


>gi|312198923|ref|YP_004018984.1| hypothetical protein FraEuI1c_5125 [Frankia sp. EuI1c]
 gi|311230259|gb|ADP83114.1| protein of unknown function UPF0118 [Frankia sp. EuI1c]
          Length = 432

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 109/348 (31%), Gaps = 14/348 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    ++++++++  ++    PV++ L+I     PI      +        A +A +
Sbjct: 87  RLLVIGAAVYVVVIAIGRVRSIVIPVVAGLLISALIVPIAQRLQ-RVGVPRLASAFLALL 145

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   +     + + +    E+  +V +V                       +        
Sbjct: 146 TFFVILGGVAVGVGFNAANELPTVVDQVNNGIGQVRDYL------------TNGPLHLSQ 193

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  I S     T     +         + ++   S++  + A FFF  DG  I   +
Sbjct: 194 KQITDLIDSVQHSLTANRGKVVSQVITTASVLVEVLASLLVTVFATFFFVYDGAGIWNWI 253

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S          +   R     +     G  +IA  + L +       G P    L ++T
Sbjct: 254 VSRFPPSAEERVRGAGREAWATLTGYIRGTVLIAFTDALGISIGLVSVGTPLVAPLALLT 313

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP     ++ TA  +  L+   +  A  +     +        + P ++   + L
Sbjct: 314 FFGGFIPIVGATVAGTAAVLVTLVAKGLVPAIIVLCVVVVVQQFEGHVMHPLVMRRAVNL 373

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             L     L  G    G+ G       +A+I  +      + K   E 
Sbjct: 374 HPLAIVISLSAGAVLAGIPGAIAAVPTVAVINRVAGYLAASGKAPPEP 421


>gi|170782573|ref|YP_001710906.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157142|emb|CAQ02322.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 382

 Score =  122 bits (306), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 110/337 (32%), Gaps = 16/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++   I+ +   LK    PV+ ALI+     P+      +        AVIA +
Sbjct: 21  QILAVLVVAIAIVYAAISLKLVVIPVIIALILACAVRPMVLWMERR-GVPDALAAVIALL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + LF   +  + +    +   LV                            L    + 
Sbjct: 80  TGLVLFGGAVTAVVFGVQSQWPTLVKATSEGVDQLQAFIEEGGLPIDSAQIDSLRQSAVD 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S                    A        +     +  ++  FFF +DG  I    
Sbjct: 140 FLTS--------------SQFGSGAIAGVSAAAEVVTGAVLGLVVFFFFVKDGPQIWAFF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++     KV+     G   +A+ + + +G+  ++ GVP  + L ++ 
Sbjct: 186 IRPFRGRGRKRAVRVGHEGSKVLGGYIRGTATVALVDTVFIGAGLFILGVPLALPLSLVV 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A +P     ++    ++  L+  ++  A  +     +   +    L+P ++G  +KL
Sbjct: 246 FIGAFVPIVGATVAGILAALVALVTNDLGTAIWVVAIVILVNQLEGNLLQPVVLGNALKL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L     L  G    G++G  +   L A+    WK 
Sbjct: 306 HGLVVLLALTAGTILGGIIGAILSVPLTAVAWTAWKI 342


>gi|325111313|ref|YP_004272381.1| hypothetical protein Plabr_4788 [Planctomyces brasiliensis DSM
           5305]
 gi|324971581|gb|ADY62359.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 459

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 149/384 (38%), Gaps = 34/384 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+  +++ + +     L  F  P+  A ++   + P+Y+ F+ + +   T  A +AT +
Sbjct: 45  AILAVLMLILGVTFFRVLAPFLLPLFLAAVVALIAQPVYNYFLKRTKNRPTVAAGMATGT 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKV-------------------VLANQHGIPVPRWL 110
           ++   I+PL      G L++     ++                         G      +
Sbjct: 105 IVAAVIIPLFIGITVGALQLFVAAEQLLDDETVQRTIDTVKQGEIYESVIVWGEQFFPIV 164

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY------- 163
           +      ++ E   +        +  +      NG+  +       G  F          
Sbjct: 165 TAEYQDRYSEEDLKEWREEVLEQRAENLRESVQNGLKRLAVITFSAGTAFTTVDILAKTG 224

Query: 164 --CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              + +I  ++AL++F+ +G ++ Q    L       + + + +     IR+      + 
Sbjct: 225 WTLMGLITFVMALYYFFCEGPNLLQHAIDLIPVDV-NHQRTLFQEFGTSIRAVVSATFLA 283

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATC 280
           A+ +G+    A W  G        ++    A+IP     + +   ++YL  +G+   A  
Sbjct: 284 ALAQGIATSVALWALGFGHFFLFTIVATFSALIPLAGTWLVWLPCAVYLAYQGSWIWALL 343

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L ++G   +  +D  +R +++    KL  L  F  ++GG++ MGL G+FI PV+ + +  
Sbjct: 344 LAVYGFGLVGTLDNIIRAYVLHSDAKLHPLLAFVSVLGGLQVMGLWGVFIAPVVASCLYA 403

Query: 341 IWKESIMAIKE----NKEKISSNF 360
           + +     + +     +E+  +NF
Sbjct: 404 LIRIFNEELVDISRLQRERPPANF 427


>gi|227876851|ref|ZP_03994960.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269977828|ref|ZP_06184785.1| integral membrane protein [Mobiluncus mulieris 28-1]
 gi|227842748|gb|EEJ52948.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|269933998|gb|EEZ90575.1| integral membrane protein [Mobiluncus mulieris 28-1]
          Length = 458

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 98/336 (29%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++  +   +  +K    PV  AL++     P+       +  +    A ++ +
Sbjct: 97  RLIAIVIVLGGVTWGISKVKVAIVPVAVALLLTLLLEPLNGRLQKWRFPN-ALSAAVSLI 155

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      +             LV K        +                 L ++ + 
Sbjct: 156 VGISALTAAIWVSVSQLASGAPALVRKAGGGFGKLMTWL--------SDEPLGLNSEDID 207

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H           L       I   A       L+   +I   +  LFFF +DG  I    
Sbjct: 208 HYAKALSRQLGGLLEKYSSSIASSAWSVTSSVLNLVAAIFISVFCLFFFLKDGRRIWVWF 267

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VI 247
             L          +        ++       ++A  + + +       G  S      ++
Sbjct: 268 MRLLPVPLREPVHEAGIRGWITLKGYIKAQAMVAGVDAVFISIGAAFLGAGSMTIPLALL 327

Query: 248 TAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP    + +     + +L+   +  A  + +       I    L+P L+   + 
Sbjct: 328 IFLASFIPIVGAVSTGAIAVLVILLDQGLVKAIIMLIVILAVQQIESNVLQPLLMSNAVN 387

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     +  G     ++G  +   ++A +  + 
Sbjct: 388 IHPLVVLLAITVGGYFASIIGALLAVPIVAFLNTVV 423


>gi|291457309|ref|ZP_06596699.1| hypothetical integral membrane protein [Bifidobacterium breve DSM
           20213]
 gi|291381144|gb|EFE88662.1| hypothetical integral membrane protein [Bifidobacterium breve DSM
           20213]
          Length = 530

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/348 (9%), Positives = 106/348 (30%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   I  I+ +  +     +      ++ +L +     P+  + ++         ++
Sbjct: 47  RALLYVAIAIIVFMFCWRSWGDISYLVLDIIISLFVALAIEPLVVALVAH-GWKRGVASM 105

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V         + +M  +   +    +         +            T
Sbjct: 106 VSLVGVAVVVSVLFTLFGNMFVQQMIAMFKGLPGMYEQIREFVDQYA------------T 153

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L       ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 154 FKMPEINNLGTEIVNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 213

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 214 RRSFCQWLAPSTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 273

Query: 245 GVITAIMA-MIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP        A+ +           A  + ++  +   I +  L P +  
Sbjct: 274 ALFCGVVSQFIPTVGTYIGGALPVLFAWGDRGWAYAVAVLVFIIVYQQIENLILSPRISQ 333

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++       
Sbjct: 334 RTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYD 381


>gi|149177786|ref|ZP_01856386.1| hypothetical protein PM8797T_08974 [Planctomyces maris DSM 8797]
 gi|148843436|gb|EDL57799.1| hypothetical protein PM8797T_08974 [Planctomyces maris DSM 8797]
          Length = 419

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 45/373 (12%), Positives = 103/373 (27%), Gaps = 28/373 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+  +I+ ++  +L         +  A++ G            +             + 
Sbjct: 40  TIITLIIVVVLASALVIAWEIILALFMAVLFGVFLTHTSRLVSDRSRLPYKASLAALVLL 99

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++C F+    F F     E++E   ++              + I   + ++ +  + LS 
Sbjct: 100 LICAFLGTTTFFFVQINQEIEEARQQIDEGINRIQNWAEEYTSISSVIHSTPILAQMLSS 159

Query: 130 PQSLKILSETFLKTNG----------------------------IDFIPRFASRFGMIFL 161
            +      +    +                                    F         
Sbjct: 160 QKEKPNQDKAEQPSPAEKEQSGSKQEPGSAEKNSQNSIQSLTQPAQQAMSFVGSMFKSTF 219

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              ++++ ++    F      +    +  L         + +   +   +    LG    
Sbjct: 220 GVVVNVVLILFVGLFLAVSPQTYRDGVVVLFPPERRDRIQGLMTQLSDTLWHWLLGRFGS 279

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
            I  GL       L GVP    LG+I+ ++  IP    +    ++I + +      A  +
Sbjct: 280 MIITGLGAWLVLSLIGVPMAGTLGLISGLLTFIPNIGSLIAFCLAILIALPKGPTTAALV 339

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                    +    + P +    + LP               G LG  +   L+A   VI
Sbjct: 340 VPAFIGLQLVESYLITPLIQEQQVSLPPALLISFQAIMGVLFGFLGAMVASPLLAASKVI 399

Query: 342 WKESIMAIKENKE 354
            +E  +     K+
Sbjct: 400 VQELYVKDYLEKQ 412


>gi|85860942|ref|YP_463144.1| permease [Syntrophus aciditrophicus SB]
 gi|85724033|gb|ABC78976.1| predicted permease [Syntrophus aciditrophicus SB]
          Length = 350

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 83/350 (23%), Positives = 150/350 (42%), Gaps = 7/350 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E           ++  +    LY +K FF P+  A+II     P+Y+  I  +  S   L
Sbjct: 2   EISKTRHLAFVLLLGLVGFGFLYLMKPFFYPLFWAIIISSIVHPLYARLI-LRWPSPNLL 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + +  V V+ + I+P +F+    + +   + + +   + H     + L     G  +S  
Sbjct: 61  SAVLLVLVLLILILPTIFIGSLLVSQSMSMYNTLSSDSSHIARNLQEL----LGWISSHP 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L   Q+  +   + +  +  ++I    S      L        M+ ALFFF RDG 
Sbjct: 117 YIQKLDIDQNFWMEKLSEMLRSIANYIFTRLSSLTQNTLAAVAQFAIMLYALFFFIRDGE 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q    L   L     + +        +ST     II   +G +   A+W+AG+   V
Sbjct: 177 KLLQSAMRLLP-LGNQRERLLFDRFINTAKSTLKVTLIIGGLQGTLGALAFWIAGIEGSV 235

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GVI  + A+IPG    I +    I LLI G+++    + L+G + + +VD  LRP L+
Sbjct: 236 LWGVIMIVTAIIPGIGCSIVWAPAGIILLISGHLWEGIMILLFGGLVISLVDNLLRPILL 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              +++  L  F   +GG+   G  G  +GP++ +L+  I +      +E
Sbjct: 296 ERDVQMHPLLIFLSTLGGIVLFGFSGFVLGPIIASLMQSICQMYEQLYRE 345


>gi|312133967|ref|YP_004001306.1| perm [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482123|ref|ZP_07941147.1| hypothetical protein HMPREF0177_00540 [Bifidobacterium sp.
           12_1_47BFAA]
 gi|311773266|gb|ADQ02754.1| PerM [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916482|gb|EFV37880.1| hypothetical protein HMPREF0177_00540 [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 504

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 109/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAVIVFMFCWRSWGDISYLVLDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +    +         +            T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYEQIREFVDQYA------------T 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|239621571|ref|ZP_04664602.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|322691775|ref|YP_004221345.1| transport protein [Bifidobacterium longum subsp. longum JCM 1217]
 gi|239515446|gb|EEQ55313.1| conserved hypothetical protein [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|320456631|dbj|BAJ67253.1| putative transport protein [Bifidobacterium longum subsp. longum
           JCM 1217]
          Length = 504

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 109/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAVIVFMFCWRSWGDISYLVLDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +    +         +            T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYEQIREFVDQYA------------T 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|313887473|ref|ZP_07821162.1| putative membrane protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923115|gb|EFR33935.1| putative membrane protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 401

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 115/322 (35%), Gaps = 19/322 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            + + VL AL I           + +K     + A + TV  +  F++PLL +    +  
Sbjct: 41  PYMSGVLGALTIYVLLRGQMKWLVERKRWGRNWAASLLTVEAIFFFLIPLLGIVLMLIDL 100

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
                     +        + +       +  E+W+                       F
Sbjct: 101 FSAFD---PESLNVLTTQAQDVVKQVEERFGIEIWSNEN--------------IQKLTSF 143

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                         + L+   ++  L+F  R        ++ L         K +S    
Sbjct: 144 STSLVKGLLQGMSSFFLNAFIILFLLYFMLRGYDQFEAAVEELLP-FTECNKKTVSNETI 202

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSI 267
            +++S  +G+ ++AI +G+     Y + GV + +   V+T    +IP     + +  +++
Sbjct: 203 SIVKSNAIGIPLLAIVQGVFAYIGYLIFGVDNALLFAVLTTFTTIIPVLGTMLVWIPIAV 262

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + I G+  NA  L L+G I +  VD   R  L      +  L T FG+  G+   G  G
Sbjct: 263 VMGINGDWLNAILLALYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFWG 322

Query: 328 LFIGPVLMALIAVIWKESIMAI 349
           +  GP++++LI +         
Sbjct: 323 VIFGPLILSLIVLFINLYRHDF 344


>gi|77163728|ref|YP_342253.1| hypothetical protein Noc_0190 [Nitrosococcus oceani ATCC 19707]
 gi|254435334|ref|ZP_05048841.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76882042|gb|ABA56723.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207088445|gb|EDZ65717.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 356

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 116/357 (32%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ +   +++ +  +++  +    APVL++L+I +    I              
Sbjct: 9   QRHFADPQVVGLAILLAVGFITVVLMGRMLAPVLASLVIAYLLEGIIGYMERW-HCPRWL 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  ++ M      +  L      ++ E   ++ +    G  +   L +    +++ E
Sbjct: 68  AVTLVFITFMAALFSLIFGLLPLLSQQLTEFFQQLPVMIARGQELLLSLPEYYPNLFSGE 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +S  +S        + +  +  +           +   + ++ M + +FFF +D 
Sbjct: 128 QVYDLMSALRSELAQWGQKVLSVSLASVVGL--------ITLAVYLVIMPLLVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L+            ++   V   I +   G  +  +    V    +   G+   
Sbjct: 180 ARLIGWLEQYLPRE-RKLAAQVWHDVDFQIGNYVRGKFLEILIVCAVTAITFTFMGLQFS 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    ++ T    ++     G   +   L     I   +    L P 
Sbjct: 239 MLLSVLVGLSVIIPYIGAVAATLPVAFVAYFQWGFSIDFAYLLGAYGIIQALDGNVLVPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  + K         +  I
Sbjct: 299 LFAEVVDLHPVAIIVAILVFGGFWGFWGIFFAIPLATLVQAVLKAWPSLPPPEESTI 355


>gi|327537952|gb|EGF24648.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 370

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 110/321 (34%), Gaps = 8/321 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L +LY+ +    PV +A+++  T  PI          S         + ++   ++ L
Sbjct: 2   LVLYALYYARSLVIPVATAIVLYLTLRPIVRHAKRIGVPSPVGA-----IGIIAGILLTL 56

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
               Y  +   KE +               +++D    +  +           + ++ SE
Sbjct: 57  GLGTYLVLEPAKETIGAAPQHLAVAKQKLSFITDRLKDVDQATEELAETEDVAAGEVASE 116

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-P 197
             +              +     +    +   I  L+F    G  + + +     +    
Sbjct: 117 KPVPVEIKQPTWTSGWSYLSGTGNVVSFLTICIALLYFLLATGDDLLRSVMRSLPNFSSR 176

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               ++   V + + S    ++ I  G G+ +    W+ G+PS +  GV+      IP  
Sbjct: 177 RKLVEVIENVQEGLGSYLAQVSAINAGLGVCVAVVMWMLGMPSPIMWGVMAFAFNFIPIV 236

Query: 258 APISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             I+       + LL     + A  + L       +  + + P ++G  + +  +  F  
Sbjct: 237 GAIAGALIIFFVALLNFEPTYYAFVVTLAFMTLTSLEGQFITPAILGRSMSMSPVLVFLS 296

Query: 316 LVGGVRTMGLLGLFIGPVLMA 336
           +V      G++G+F+   ++ 
Sbjct: 297 IVVWGWMWGIMGVFLSVPILI 317


>gi|212712086|ref|ZP_03320214.1| hypothetical protein PROVALCAL_03165 [Providencia alcalifaciens DSM
           30120]
 gi|212685608|gb|EEB45136.1| hypothetical protein PROVALCAL_03165 [Providencia alcalifaciens DSM
           30120]
          Length = 371

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/359 (18%), Positives = 141/359 (39%), Gaps = 7/359 (1%)

Query: 2   RETMLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++ +  P+ ++  + I+F+I    + L  F    + A ++   +WPI     ++      
Sbjct: 5   QKRLDLPKLVLGLLSIIFMIATCFWVLSPFILGFIWAGMMVIATWPILLRLEARLWHKRW 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
             ++   + +  LF++P   L    +     L+          +P   WL+ IP  G   
Sbjct: 65  LASLTMVLLIFLLFVIPTSILIGSIIQNSAPLIELAKSPTNMTLPDLEWLNQIPMVGEKL 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   +  +            +    A         +   ++ M++     Y 
Sbjct: 125 YYAWHSLVASGGNALLAKVQPYFGQAAGWFATQAISASR----FLFHLVLMLLFSGLLYY 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + IR+  LG+ + A+ + +V G    L+G+ 
Sbjct: 181 KGELVTLGVRHFAVRLAGIRGDAAVVLAAQSIRAVALGVVVTALIQAIVGGIGLALSGIS 240

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  I  +   G  +      ++L   G+   A  L +W A+   +    LRP+
Sbjct: 241 YAAILTVLIFICCVAQLGPLLVMVPSVLWLFWTGDTTWAIILGVWAAVVATMDG-VLRPW 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     LP +    G++GG+ + G++GLFIGPV++A+   + K  +  +    E + +
Sbjct: 300 LIKMGADLPMVLILVGVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAPPSEDLEA 358


>gi|257458847|ref|ZP_05623970.1| acid membrane antigen A [Campylobacter gracilis RM3268]
 gi|257443835|gb|EEV18955.1| acid membrane antigen A [Campylobacter gracilis RM3268]
          Length = 467

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 112/350 (32%), Gaps = 23/350 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +       + +    +Y    F   ++  +++   +  +++          T  +V+
Sbjct: 122 KTNKIFFIGATLLMFCCVIYLFSPFLMVIVIGVLMAVATSGLHAKVTKLCRGRRTLASVL 181

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKEL-VSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +   +  LF VP ++             ++++  A  +   +               L  
Sbjct: 182 SLFLLCALFFVPFIYAVIEIAKNAASFDMARLNDALSYVQSL------------DIRLPG 229

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                    +              I  + S  G     + + ++ +I+  FF Y  G S 
Sbjct: 230 PFEKFNTQFRSFLANLDVAGVAKQIISYLSVVGKSSAKFIVDMVLIIVFCFFAYLYGESF 289

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +    +     PA    I       +   F      A+ +G +      + G  + +  
Sbjct: 290 KRFFKKILPVE-PAQIDYIFSETANTMSVVFYSTIFNAVLQGFLFSIIAGIFGFDALLMG 348

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP----- 298
            +      +   G  + +   ++Y+L  G+   A  +  +  I +  + D  ++P     
Sbjct: 349 VLFAFCSLIPAVGGALIYVPTALYVLAGGSTSGAIVIMAYCVILISTLADSFVKPLVIKF 408

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               LV  P  +  +  FF ++ G+ T G  G+ +GP ++ L   +    
Sbjct: 409 INSRLVENPANINEMLIFFSMLSGISTFGFWGVILGPAILTLFIAVLNLY 458


>gi|229135431|ref|ZP_04264218.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST196]
 gi|228647992|gb|EEL04040.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST196]
          Length = 365

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 121/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +   +   +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLMFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 351


>gi|146279175|ref|YP_001169333.1| hypothetical protein Rsph17025_3144 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557416|gb|ABP72028.1| hypothetical protein Rsph17025_3144 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 393

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 115/341 (33%), Gaps = 14/341 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            ++  + ++ ++++ ++++ LYF +    P++  L+I  T  P+  S             
Sbjct: 35  HLVAIRRLLGFILLVLVIMGLYFARDVILPLMIGLLIALTFSPVVRSLHRIGIAPPVTAT 94

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +       + I   +         + + +S+            + L      + + E  
Sbjct: 95  ALIVSLAAVIGIGAFILSGP-----VSDWISQAPRLGDQLRERAQTL------LASFEAV 143

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    L   +E           P   S           + I  ++   F    G  
Sbjct: 144 QNASEQVSELANDAEDPTVQRVAVQTPGILSSAVGSVASVLTTTIVTLVLALFLLASGDL 203

Query: 184 ISQQLDSLGEHL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +L              +I   + + +    L +TII  G G+V+G A W AG+PS +
Sbjct: 204 FYIKLIEAFPRFGDKKRALRIVYGIERRVSRYLLSVTIINAGLGVVIGLAMWGAGMPSPI 263

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              +   ++  +P    IS  A+S  +      ++  A  +         I  + + P +
Sbjct: 264 IWAIGAFLLNFLPYIGAISGVALSAAVAIVHYDHLSQAFLVPALYLAATAIEGQLVTPIV 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +G  ++L  +  F  ++      G+ G  I    +  + V+
Sbjct: 324 LGRRLELNTVSVFVTVIFWGWLWGVPGALIAVPFLVCLKVV 364


>gi|330431381|gb|AEC16440.1| putative transport protein [Gallibacterium anatis UMN179]
          Length = 353

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 97/343 (28%), Gaps = 11/343 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ    + ++ I+ V  YF    F P+L A+++ +          ++ +     
Sbjct: 10  RRRFSDPQAAGLFSLLLIVCVGFYFFSDLFTPLLIAIVLAYLLELPIQYLTTRFKFPHLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     +   +   + +      +   L+  +   +         L +         
Sbjct: 70  ALALVLGGFIAAVLFVFIVMIPTLWNQTVNLLKDLPTMSNQLHQWVLSLPENYPEYVDYA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +     +  +   +          +  I    +          +    + + +FF  +D 
Sbjct: 130 MIDTVFNGLREKILGFGESALRYSLTSIVSLVT--------LGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +             ++   + + I +   G  +  +    V    + +  +   
Sbjct: 182 NYLISGVSRFLP-KNRQLVNQVWDEMKQQIANYIRGKVVEIVVVTAVSYVTFLIFKLNYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  ++P    +  T       L   G       L L   I   +    L P 
Sbjct: 241 LLLAVAIGLSVLVPYVGAVLVTIPLALVALFQFGWSATFGYLMLVYTITQILDGNLLVPL 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    + L  L     ++      G  G+F    L  L+  I 
Sbjct: 301 LFSEAVNLHPLVIIVSVIFFGGLWGFWGVFFAIPLATLVKAII 343


>gi|170691340|ref|ZP_02882505.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170143545|gb|EDT11708.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 358

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 124/347 (35%), Gaps = 8/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +   I   + + L+ L     P L   I+ +   P  +  + ++       A++  
Sbjct: 13  RRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRV-PRALAALLMM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L  + +L +F     E  +L  +V     H     +     P         +   
Sbjct: 72  LLFTLLMTLLVLLVFAVIQKEGPQLRQQVPQLFAHVNAWLQ-----PKLAMLGLADSLDF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  + + +            +        G + +    +++ + + LF+   D   +  +
Sbjct: 127 ASVRDMVMGQLEGSAQTVARYAWTSIVTSGNVMMTVVGNLVMVPLVLFYLLYDWNRMLLR 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S+    +     +++R + +++     G  ++     +   +A  +AG    + +G+ 
Sbjct: 187 MQSVVPRRWLDKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAAALSIAGFEIALPVGIF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +  A+++       GN +    + L   +   +    L P LVG  I
Sbjct: 247 TGLAVFIPYIGFATGLALALLAALLQFGNWYGFGAVALIYGVGQIVESFYLTPRLVGERI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  L   F L+   +  G  G+ +   + A+++V  +E   +  ++
Sbjct: 307 GLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAMRELRQSYLQS 353


>gi|49478696|ref|YP_038640.1| permease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|52140913|ref|YP_085916.1| permease [Bacillus cereus E33L]
 gi|118479743|ref|YP_896894.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|196040923|ref|ZP_03108221.1| sporulation integral membrane protein YtvI [Bacillus cereus
           NVH0597-99]
 gi|196047486|ref|ZP_03114697.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB108]
 gi|225866573|ref|YP_002751951.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB102]
 gi|49330252|gb|AAT60898.1| conserved hypothetical protein, possible permease [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51974382|gb|AAU15932.1| conserved hypothetical protein; possible permease [Bacillus cereus
           E33L]
 gi|118418968|gb|ABK87387.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|196021701|gb|EDX60397.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB108]
 gi|196028377|gb|EDX66986.1| sporulation integral membrane protein YtvI [Bacillus cereus
           NVH0597-99]
 gi|225789224|gb|ACO29441.1| sporulation integral membrane protein YtvI [Bacillus cereus
           03BB102]
          Length = 372

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLVFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 311 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|18309525|ref|NP_561459.1| permease [Clostridium perfringens str. 13]
 gi|18144202|dbj|BAB80249.1| probable permease [Clostridium perfringens str. 13]
          Length = 377

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 109/332 (32%), Gaps = 8/332 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMC 72
           I+  LY   G   P +  + I F                        +F   +  +  + 
Sbjct: 31  IINFLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFIL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQ 131
              + +LF+    +  +  L++ +                +        +     L +  
Sbjct: 91  AITLFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMW 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   + +    + ++  F        +++ LS+I  I  L         +   + + 
Sbjct: 151 KEILKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++  +  ++     LG    A+  G++      +  +P  + + V+  + 
Sbjct: 211 VSKNKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP       T  S ++++  +   A    ++  +   +    + P +VG  I L  L 
Sbjct: 271 ALIPVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALW 330

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             F ++ G    G++G+ IG  +  ++  I K
Sbjct: 331 VMFAMIVGGSLFGIIGMLIGIPIFGVVFKILK 362


>gi|300785432|ref|YP_003765723.1| hypothetical protein AMED_3535 [Amycolatopsis mediterranei U32]
 gi|299794946|gb|ADJ45321.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 375

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 99/323 (30%), Gaps = 17/323 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               V  AL +   + P  S  ++++            V         L       + + 
Sbjct: 69  ILVLVGLALFLAIGAEPAVSWLVTRR-FPRWLAVTTVFVVAFGAVGGFLAAAIPVIVEQA 127

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             LV +     +       +L  +       +                      +    +
Sbjct: 128 TALVKQAPEYLREAQDHNTFLGRLNERFHLQQAIESAF----------------SSGGGL 171

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G    +     + +++   +F  D   I   +  L  H        I   +  
Sbjct: 172 TSGVLGAGKAVFNVVTDTLVVVVLTIYFVADLPRIRATMYRLIPHSRRPRAILIGDDIFS 231

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +    LG   +++  G++      + GVP    L +  A++ +IP    +    +   +
Sbjct: 232 KVGGYVLGNLAVSVIAGVLTLVWLLIFGVPYAALLAIAVAVLDLIPVIGSVIGGVLVSLV 291

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  ++        +  +     D  L P ++G  +K+P L T   ++ G   +G++G  
Sbjct: 292 ALTVSLPVCLATVGFFVVYRLAEDYLLVPKIIGNVLKVPALVTVVAVLLGGALLGIIGAL 351

Query: 330 IGPVLMALIAVIWKESIMAIKEN 352
           +   + A I ++ +E +    + 
Sbjct: 352 VAIPVAAAILLLVEEVLYPRLDQ 374


>gi|260868179|ref|YP_003234581.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|257764535|dbj|BAI36030.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323181004|gb|EFZ66542.1| hypothetical protein ECOK1180_0300 [Escherichia coli 1180]
          Length = 370

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 135/356 (37%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVVQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|229141127|ref|ZP_04269669.1| hypothetical protein bcere0013_42210 [Bacillus cereus BDRD-ST26]
 gi|228642405|gb|EEK98694.1| hypothetical protein bcere0013_42210 [Bacillus cereus BDRD-ST26]
          Length = 361

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 49  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPVVIKQLQ 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 108 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFIGVETKIQALL 157

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 158 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQILAKEIDKS 217

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 218 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 277

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 278 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVAGIVGLLI 337

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 338 SVPVLAVIRTVI 349


>gi|204927467|ref|ZP_03218668.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322809|gb|EDZ08005.1| inner membrane protein YdiK [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 372

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVYEVPAPTNEPEE 357


>gi|152970708|ref|YP_001335817.1| putative inner membrane protein [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895213|ref|YP_002919948.1| putative inner membrane protein [Klebsiella pneumoniae NTUH-K2044]
 gi|329999400|ref|ZP_08303408.1| hypothetical protein HMPREF9538_01066 [Klebsiella sp. MS 92-3]
 gi|150955557|gb|ABR77587.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238547530|dbj|BAH63881.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|328538324|gb|EGF64461.1| hypothetical protein HMPREF9538_01066 [Klebsiella sp. MS 92-3]
          Length = 370

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 127/347 (36%), Gaps = 6/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    PQ ++  + + +I++  L+ ++ F      A  +   +WP+              
Sbjct: 6   QPRDIPQILLSVLFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRVLFGKRLL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +  T+ +  LF++P+  L    +     L+  +   N          S    G     
Sbjct: 66  AVLAMTLLLFLLFVIPIALLVNSLVDNSVPLIKLISSGNVTLPDFAWLNSVPLVGDKLYS 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L    S  +            +    A+  G       +    M++     Y  G
Sbjct: 126 AWHGLLDMGGSAIMAKVRPYIGTTTSWFVGQAAHIGK----LLVYCGLMLLFSALLYWRG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++         L          +  + +R+  LG+ + A+ + ++ G    ++GVP  
Sbjct: 182 EQVAYGFRYFATRLAAKRGDAAVLLAGQAVRAVALGVVVTALTQAVLGGIGLAVSGVPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+     ++  G  +      I+L   G+    T L +W  +    +D  +RP L+
Sbjct: 242 ALLTVVMIFTCLVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSCVV-GTMDNVIRPVLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 301 RMGADLPMILILTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 347


>gi|115379270|ref|ZP_01466383.1| permease [Stigmatella aurantiaca DW4/3-1]
 gi|310823540|ref|YP_003955898.1| hypothetical protein STAUR_6314 [Stigmatella aurantiaca DW4/3-1]
 gi|115363711|gb|EAU62833.1| permease [Stigmatella aurantiaca DW4/3-1]
 gi|309396612|gb|ADO74071.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 395

 Score =  122 bits (306), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 104/369 (28%), Gaps = 26/369 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLA 63
            + I+   +   I   L   +    P   A +I +   P+ +     +            
Sbjct: 15  KRLIILACLWVSIAGVLIAFRSVVMPFAGAALIAYLVQPLVARITRWRVAGRPVPRWVAI 74

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++          +  + L      E+  +    +       P            W     
Sbjct: 75  LLIYALFFVGVYLFFIALVPQLYRELARISRDGLAFANSLTPEYVQSLAHRAEEWLGGYG 134

Query: 124 TKHLSHPQSLKILSETF----------------------LKTNGIDFIPRFASRFGMIFL 161
                  ++L+    +                       L    +  I   +       L
Sbjct: 135 LPVALSNRALEGADPSPGGFGFEVDLGQLLKDAVERLTGLLQENLGNIVNVSKSIIAGVL 194

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
                + F+++   FF  D  +I +   +L    + A    +   + + +     G   I
Sbjct: 195 ASVFMLFFILMVAAFFSIDAHAILRYFSTLIPADYAADAALLLERIDRSLSGVVRGQVTI 254

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
            +  G +      + GV     L  I  + ++IP    I  +   + + +         +
Sbjct: 255 CLVNGALTAIGLLVFGVKFAFLLATIATLFSLIPIFGTIISSVPIVLIALAEGFQKGLAI 314

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            LW      +    L P ++G   ++  +   F L+ G R  GL+G      + AL    
Sbjct: 315 LLWIIGIHALEAYFLNPKIMGQAARIHPVIVAFSLIAGERLYGLVGALFAVPVAALFVAC 374

Query: 342 WKESIMAIK 350
           +  + +  +
Sbjct: 375 FDYARLKAQ 383


>gi|331648138|ref|ZP_08349228.1| putative permease PerM [Escherichia coli M605]
 gi|331684135|ref|ZP_08384731.1| putative permease PerM [Escherichia coli H299]
 gi|281179544|dbj|BAI55874.1| putative transport protein [Escherichia coli SE15]
 gi|330912263|gb|EGH40773.1| putative permease PerM ( YfgO) [Escherichia coli AA86]
 gi|331042998|gb|EGI15138.1| putative permease PerM [Escherichia coli M605]
 gi|331079087|gb|EGI50289.1| putative permease PerM [Escherichia coli H299]
          Length = 353

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 106/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDG 348


>gi|296116208|ref|ZP_06834826.1| hypothetical protein GXY_10439 [Gluconacetobacter hansenii ATCC
           23769]
 gi|295977314|gb|EFG84074.1| hypothetical protein GXY_10439 [Gluconacetobacter hansenii ATCC
           23769]
          Length = 357

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/340 (22%), Positives = 150/340 (44%), Gaps = 3/340 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +M  M+  I    +  L  F + +L A I+ F++WPIY         +    A+ 
Sbjct: 1   MVERIMMGLMLGGIAFGCILILYPFMSALLWAAILTFSTWPIYVRLRRHT--NPLIAALG 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            TV    + +VPL  +   G++E+ + +   + +    I +P     +           +
Sbjct: 59  MTVMSAVVMVVPLTLVVSSGIVELPQTLPDAIDSITTVIHLPSLPVWLQHIPHLGPQMNE 118

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                +      +  +       + ++A    M        +   +   FFF+  G ++ 
Sbjct: 119 TWEKWRVDVGNIDQMI-RPYSGRLVQWALGGIMQLASGLAHLGMALFMAFFFWLGGEALG 177

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               S+   +   Y  +I  I+ + IR T  G+   A+ +G++ G  + +AG+ + V  G
Sbjct: 178 ATFVSVVRRIAGGYADRILGIIGRTIRGTVYGIIGTALLQGVLTGIGFAIAGIANPVLWG 237

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            ITA ++++P GAP+ +   + +L +  +      L L+G I +   D  +RP  +    
Sbjct: 238 GITAFISVLPIGAPLIWIPAAFFLFVAHHPGWGVFLLLYGTIIVSGADHIMRPMFIARGA 297

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +LP+L T  G++GG+ T G LG+F+GPVL+ +   +  E 
Sbjct: 298 QLPYLLTVLGVLGGIWTFGGLGIFLGPVLIGVGYTLTAEF 337


>gi|229013801|ref|ZP_04170929.1| Sporulation integral membrane protein YtvI [Bacillus mycoides DSM
           2048]
 gi|229169323|ref|ZP_04297033.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH621]
 gi|228614086|gb|EEK71201.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH621]
 gi|228747470|gb|EEL97345.1| Sporulation integral membrane protein YtvI [Bacillus mycoides DSM
           2048]
          Length = 365

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 121/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   +   +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVVGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAHKVRKLLPNRLHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKAHV 351


>gi|304397632|ref|ZP_07379509.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304354804|gb|EFM19174.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 372

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 135/358 (37%), Gaps = 7/358 (1%)

Query: 3   ETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
             M  PQ +     I+ +I+  L+ ++ F      A ++   +WP+   F        + 
Sbjct: 7   RDMDLPQILFTLMFILLLIVACLWVVQPFILGFAWASMVVIATWPLMLKFQRLLWGRRSL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++ T+ ++ LFI+P+  L    +     +++ V             L+ +       +
Sbjct: 67  AVIVMTLLLLLLFIIPIALLVSSLIDNSAPVIAWVTQG-----HTMPKLTWLREIPMVGK 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     +             I     F       F  + + +  M++     Y  G
Sbjct: 122 KLYVSYDTLVASGGAGVMAKIQPYIGRTTGFFVAQAGHFGRFMIHLGVMLLFSVLLYWRG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              +Q +      +          +  + IR+  LG+ + A+ +G++ G    ++G+P  
Sbjct: 182 EQAAQGIRHFAFRMAGRRGDAAVLLAAQSIRAVALGVVVTALVQGVLGGIGLAISGIPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  +  ++  G  +      IYL   G+    T L +W  +    +D  LRP L+
Sbjct: 242 TLLTVLMILCCLVQLGPLLVLVPAIIYLYWSGDTTWGTVLLVWSCVV-GTMDNVLRPMLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                LP +    G++GG+   G++GLFIGPV++A+   +    +       +   ++
Sbjct: 301 RMGADLPMILILSGVIGGLFAFGMIGLFIGPVVLAVSYRLVSVWVHEAPAPDKDPMAS 358


>gi|168204285|ref|ZP_02630290.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
 gi|169342966|ref|ZP_02863994.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|169298875|gb|EDS80949.1| putative membrane protein [Clostridium perfringens C str. JGS1495]
 gi|170664060|gb|EDT16743.1| putative membrane protein [Clostridium perfringens E str. JGS1987]
          Length = 377

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 108/329 (32%), Gaps = 8/329 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMCLFI 75
            LY   G   P +  + I F                        +F   +  +  +    
Sbjct: 34  FLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFILAIT 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLK 134
           + +LF+    +  +  L++ +                +        +     L +     
Sbjct: 94  LFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMWKEI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   + +    + ++  F        +++ LS+I  I  L         +   + +    
Sbjct: 154 LKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAFVSK 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++ ++  ++     LG    A+  G++      +  +P  + + V+  + A+I
Sbjct: 214 NKADRIIELGKMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVTALI 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P       T  S ++++  +   A    ++  +   +    + P +VG  I L  L   F
Sbjct: 274 PVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALWVMF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++ G    G++G+ IG  +  ++  I K
Sbjct: 334 AMIVGGSLFGIIGMLIGIPIFGVVFKILK 362


>gi|167760610|ref|ZP_02432737.1| hypothetical protein CLOSCI_02992 [Clostridium scindens ATCC 35704]
 gi|167661735|gb|EDS05865.1| hypothetical protein CLOSCI_02992 [Clostridium scindens ATCC 35704]
          Length = 386

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 104/342 (30%), Gaps = 14/342 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------------STFLAVI 65
           +++  L F+     P +    I F      +                           +I
Sbjct: 30  VVVSVLAFIFHVIFPFVLGGAIAFILNVPMNFIQRHLFAPERVERHKIQKKIARPVSMLI 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWT 124
               V  +  + +  L          L S +             L  D    M       
Sbjct: 90  VIFGVFGIVALVMFVLIPQLGDTFSNLGSSIQAFIPKVQEWAEKLFHDNKEIMTWVNSLK 149

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      I        + +D     A         + ++ +F +  L    + G   
Sbjct: 150 FDWNKIMGAGIDFFKNGAGSVLDSTITAAKSIVSGITTFFIAFVFAVYILLQKEKLGIQA 209

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +           ++  +      S   G  + AI  G +      L  +P  + +
Sbjct: 210 KKVLFAFVRKGRAEAAMEVLSLTYNTFSSFLTGQCLEAIILGSMFVVTMTLFKLPYALLV 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++ A  A+IP        AV  +L+   + F A    +   I   I    + P +VG  
Sbjct: 270 GIVIAFTALIPIFGAFIGCAVGAFLIFMVDPFKALIFVILFLILQQIEGNLIYPHVVGNS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + LP +     +  G   MG++G+ I   +++++  +++E +
Sbjct: 330 VGLPSIWVLAAVSIGGSLMGIVGMLIFIPIISVVYALFREIV 371


>gi|306817796|ref|ZP_07451537.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649445|gb|EFM46729.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 458

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 98/336 (29%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++  +   +  +K    PV  AL++     P+       +  +    A ++ +
Sbjct: 97  RLIAIVIVLGGVTWGISKVKVAIVPVAVALLLTLLLEPLNGRLQKWRFPN-ALSAAVSLI 155

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      +             LV K        +                 L ++ + 
Sbjct: 156 VGISALTAAIWVSVSQLASGAPALVRKAGGGFGKLMTWL--------SDEPLGLNSEDID 207

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H           L       I   A       L+   +I   +  LFFF +DG  I    
Sbjct: 208 HYAKALSRQLGGLLEKYSSSIASSAWSVTSSVLNLVAAIFISVFCLFFFLKDGRRIWVWF 267

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VI 247
             L          +        ++       ++A  + + +       G  S      ++
Sbjct: 268 MRLLPVPLREPVHEAGIRGWITLKGYIKAQAMVAGVDAVFISIGAAFLGAGSMTIPLALL 327

Query: 248 TAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP    + +     + +L+   +  A  + +       I    L+P L+   + 
Sbjct: 328 IFLASFIPIVGAVSTGAIAVLVILLDQGLVKAIIMLVVILAVQQIESNVLQPLLMSNAVN 387

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     +  G     ++G  +   ++A +  + 
Sbjct: 388 IHPLVVLLAITVGGYFASIIGALLAVPIVAFLNTVV 423


>gi|206977140|ref|ZP_03238039.1| sporulation integral membrane protein YtvI [Bacillus cereus
           H3081.97]
 gi|217962076|ref|YP_002340646.1| sporulation integral membrane protein YtvI [Bacillus cereus AH187]
 gi|206744625|gb|EDZ56033.1| sporulation integral membrane protein YtvI [Bacillus cereus
           H3081.97]
 gi|217064824|gb|ACJ79074.1| sporulation integral membrane protein YtvI [Bacillus cereus AH187]
 gi|324328488|gb|ADY23748.1| sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 372

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 118/346 (34%), Gaps = 10/346 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLVFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K 
Sbjct: 311 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKA 356


>gi|15832609|ref|NP_311382.1| permease [Escherichia coli O157:H7 str. Sakai]
 gi|16130418|ref|NP_416988.1| predicted inner membrane permease, UPF0118 family [Escherichia coli
           str. K-12 substr. MG1655]
 gi|74313019|ref|YP_311438.1| putative permease [Shigella sonnei Ss046]
 gi|82544940|ref|YP_408887.1| permease [Shigella boydii Sb227]
 gi|82777872|ref|YP_404221.1| putative permease [Shigella dysenteriae Sd197]
 gi|89109299|ref|AP_003079.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|157157181|ref|YP_001463815.1| PerM family permease [Escherichia coli E24377A]
 gi|157161953|ref|YP_001459271.1| PerM family permease [Escherichia coli HS]
 gi|168748451|ref|ZP_02773473.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756262|ref|ZP_02781269.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761099|ref|ZP_02786106.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768582|ref|ZP_02793589.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773596|ref|ZP_02798603.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778456|ref|ZP_02803463.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787836|ref|ZP_02812843.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
 gi|168798861|ref|ZP_02823868.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|170019223|ref|YP_001724177.1| hypothetical protein EcolC_1183 [Escherichia coli ATCC 8739]
 gi|170082103|ref|YP_001731423.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|170684284|ref|YP_001744676.1| PerM family permease [Escherichia coli SMS-3-5]
 gi|187731235|ref|YP_001881284.1| putative permease, PerM family [Shigella boydii CDC 3083-94]
 gi|188494088|ref|ZP_03001358.1| putative permease, PerM family [Escherichia coli 53638]
 gi|191169210|ref|ZP_03030965.1| putative permease, PerM family [Escherichia coli B7A]
 gi|193064715|ref|ZP_03045793.1| putative permease, PerM family [Escherichia coli E22]
 gi|193068364|ref|ZP_03049327.1| putative permease, PerM family [Escherichia coli E110019]
 gi|194427318|ref|ZP_03059868.1| putative permease, PerM family [Escherichia coli B171]
 gi|194432082|ref|ZP_03064371.1| putative permease, PerM family [Shigella dysenteriae 1012]
 gi|194437683|ref|ZP_03069779.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|195936636|ref|ZP_03082018.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807106|ref|ZP_03249443.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813929|ref|ZP_03255258.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818576|ref|ZP_03258896.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395768|ref|YP_002271962.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209919969|ref|YP_002294053.1| putative transport protein [Escherichia coli SE11]
 gi|217327918|ref|ZP_03444001.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|218555018|ref|YP_002387931.1| putative permease [Escherichia coli IAI1]
 gi|218696120|ref|YP_002403787.1| putative permease [Escherichia coli 55989]
 gi|218700950|ref|YP_002408579.1| putative permease [Escherichia coli IAI39]
 gi|218705992|ref|YP_002413511.1| putative permease [Escherichia coli UMN026]
 gi|238901658|ref|YP_002927454.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253772615|ref|YP_003035446.1| hypothetical protein ECBD_1195 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162467|ref|YP_003045575.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|254794438|ref|YP_003079275.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017359|ref|ZP_05431224.1| predicted inner membrane protein [Shigella sp. D9]
 gi|256021821|ref|ZP_05435686.1| predicted inner membrane protein [Escherichia sp. 4_1_40B]
 gi|260845123|ref|YP_003222901.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|260856587|ref|YP_003230478.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|260869182|ref|YP_003235584.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|261223074|ref|ZP_05937355.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259374|ref|ZP_05951907.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291283713|ref|YP_003500531.1| putative permease perM [Escherichia coli O55:H7 str. CB9615]
 gi|293405929|ref|ZP_06649921.1| permease PerM [Escherichia coli FVEC1412]
 gi|293410888|ref|ZP_06654464.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415756|ref|ZP_06658399.1| permease PerM [Escherichia coli B185]
 gi|293446846|ref|ZP_06663268.1| permease [Escherichia coli B088]
 gi|298381677|ref|ZP_06991276.1| permease [Escherichia coli FVEC1302]
 gi|300820841|ref|ZP_07100991.1| hypothetical protein HMPREF9346_00654 [Escherichia coli MS 119-7]
 gi|300897626|ref|ZP_07116031.1| hypothetical protein HMPREF9552_01838 [Escherichia coli MS 198-1]
 gi|300921425|ref|ZP_07137785.1| hypothetical protein HMPREF9540_05041 [Escherichia coli MS 115-1]
 gi|300922199|ref|ZP_07138335.1| hypothetical protein HMPREF9548_00476 [Escherichia coli MS 182-1]
 gi|300930130|ref|ZP_07145552.1| hypothetical protein HMPREF9550_02421 [Escherichia coli MS 187-1]
 gi|300940265|ref|ZP_07154862.1| hypothetical protein HMPREF9530_05022 [Escherichia coli MS 21-1]
 gi|300951805|ref|ZP_07165619.1| hypothetical protein HMPREF9541_05109 [Escherichia coli MS 116-1]
 gi|300958880|ref|ZP_07170986.1| hypothetical protein HMPREF9547_04570 [Escherichia coli MS 175-1]
 gi|301023878|ref|ZP_07187609.1| hypothetical protein HMPREF9551_02146 [Escherichia coli MS 196-1]
 gi|301024715|ref|ZP_07188358.1| hypothetical protein HMPREF9534_04007 [Escherichia coli MS 69-1]
 gi|301329015|ref|ZP_07222042.1| hypothetical protein HMPREF9535_03707 [Escherichia coli MS 78-1]
 gi|301644483|ref|ZP_07244480.1| hypothetical protein HMPREF9543_01134 [Escherichia coli MS 146-1]
 gi|307139127|ref|ZP_07498483.1| putative permease perM [Escherichia coli H736]
 gi|307312513|ref|ZP_07592146.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|309784770|ref|ZP_07679403.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309794463|ref|ZP_07688886.1| hypothetical protein HMPREF9348_01654 [Escherichia coli MS 145-7]
 gi|312973269|ref|ZP_07787441.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331643110|ref|ZP_08344245.1| putative permease PerM [Escherichia coli H736]
 gi|331653918|ref|ZP_08354919.1| putative permease PerM [Escherichia coli M718]
 gi|331669235|ref|ZP_08370083.1| putative permease PerM [Escherichia coli TA271]
 gi|331678480|ref|ZP_08379155.1| putative permease PerM [Escherichia coli H591]
 gi|84028850|sp|P0AFJ0|PERM_ECO57 RecName: Full=Putative permease perM
 gi|84028929|sp|P0AFI9|PERM_ECOLI RecName: Full=Putative permease perM
 gi|1788838|gb|AAC75546.1| predicted inner membrane permease, UPF0118 family [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1805554|dbj|BAA16382.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|13362825|dbj|BAB36778.1| putative permease [Escherichia coli O157:H7 str. Sakai]
 gi|73856496|gb|AAZ89203.1| putative permease [Shigella sonnei Ss046]
 gi|81242020|gb|ABB62730.1| putative permease [Shigella dysenteriae Sd197]
 gi|81246351|gb|ABB67059.1| putative permease [Shigella boydii Sb227]
 gi|157067633|gb|ABV06888.1| putative permease, PerM family [Escherichia coli HS]
 gi|157079211|gb|ABV18919.1| putative permease, PerM family [Escherichia coli E24377A]
 gi|169754151|gb|ACA76850.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|169889938|gb|ACB03645.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|170522002|gb|ACB20180.1| putative permease, PerM family [Escherichia coli SMS-3-5]
 gi|187428227|gb|ACD07501.1| putative permease, PerM family [Shigella boydii CDC 3083-94]
 gi|187770714|gb|EDU34558.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017034|gb|EDU55156.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188489287|gb|EDU64390.1| putative permease, PerM family [Escherichia coli 53638]
 gi|189003164|gb|EDU72150.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356636|gb|EDU75055.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362303|gb|EDU80722.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368419|gb|EDU86835.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372357|gb|EDU90773.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
 gi|189378577|gb|EDU96993.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|190900755|gb|EDV60549.1| putative permease, PerM family [Escherichia coli B7A]
 gi|192927598|gb|EDV82214.1| putative permease, PerM family [Escherichia coli E22]
 gi|192958316|gb|EDV88756.1| putative permease, PerM family [Escherichia coli E110019]
 gi|194414639|gb|EDX30911.1| putative permease, PerM family [Escherichia coli B171]
 gi|194419611|gb|EDX35691.1| putative permease, PerM family [Shigella dysenteriae 1012]
 gi|194423489|gb|EDX39480.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|208726907|gb|EDZ76508.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735206|gb|EDZ83893.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738699|gb|EDZ86381.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157168|gb|ACI34601.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209763588|gb|ACI80106.1| putative permease [Escherichia coli]
 gi|209763590|gb|ACI80107.1| putative permease [Escherichia coli]
 gi|209763592|gb|ACI80108.1| putative permease [Escherichia coli]
 gi|209763594|gb|ACI80109.1| putative permease [Escherichia coli]
 gi|209763596|gb|ACI80110.1| putative permease [Escherichia coli]
 gi|209913228|dbj|BAG78302.1| putative transport protein [Escherichia coli SE11]
 gi|217320285|gb|EEC28710.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|218352852|emb|CAU98651.1| putative permease [Escherichia coli 55989]
 gi|218361786|emb|CAQ99385.1| putative permease [Escherichia coli IAI1]
 gi|218370936|emb|CAR18757.1| putative permease [Escherichia coli IAI39]
 gi|218433089|emb|CAR13984.1| putative permease [Escherichia coli UMN026]
 gi|238862515|gb|ACR64513.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|242378091|emb|CAQ32864.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|253323659|gb|ACT28261.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974368|gb|ACT40039.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253978535|gb|ACT44205.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254593838|gb|ACT73199.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755236|dbj|BAI26738.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257760270|dbj|BAI31767.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|257765538|dbj|BAI37033.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|260448428|gb|ACX38850.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|284922440|emb|CBG35527.1| putative permease [Escherichia coli 042]
 gi|290763586|gb|ADD57547.1| Putative permease perM [Escherichia coli O55:H7 str. CB9615]
 gi|291323676|gb|EFE63104.1| permease [Escherichia coli B088]
 gi|291428137|gb|EFF01164.1| permease PerM [Escherichia coli FVEC1412]
 gi|291433404|gb|EFF06383.1| permease PerM [Escherichia coli B185]
 gi|291471356|gb|EFF13840.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298279119|gb|EFI20633.1| permease [Escherichia coli FVEC1302]
 gi|299880632|gb|EFI88843.1| hypothetical protein HMPREF9551_02146 [Escherichia coli MS 196-1]
 gi|300314482|gb|EFJ64266.1| hypothetical protein HMPREF9547_04570 [Escherichia coli MS 175-1]
 gi|300358626|gb|EFJ74496.1| hypothetical protein HMPREF9552_01838 [Escherichia coli MS 198-1]
 gi|300396446|gb|EFJ79984.1| hypothetical protein HMPREF9534_04007 [Escherichia coli MS 69-1]
 gi|300411659|gb|EFJ94969.1| hypothetical protein HMPREF9540_05041 [Escherichia coli MS 115-1]
 gi|300421438|gb|EFK04749.1| hypothetical protein HMPREF9548_00476 [Escherichia coli MS 182-1]
 gi|300448968|gb|EFK12588.1| hypothetical protein HMPREF9541_05109 [Escherichia coli MS 116-1]
 gi|300454906|gb|EFK18399.1| hypothetical protein HMPREF9530_05022 [Escherichia coli MS 21-1]
 gi|300461974|gb|EFK25467.1| hypothetical protein HMPREF9550_02421 [Escherichia coli MS 187-1]
 gi|300526594|gb|EFK47663.1| hypothetical protein HMPREF9346_00654 [Escherichia coli MS 119-7]
 gi|300844649|gb|EFK72409.1| hypothetical protein HMPREF9535_03707 [Escherichia coli MS 78-1]
 gi|301077228|gb|EFK92034.1| hypothetical protein HMPREF9543_01134 [Escherichia coli MS 146-1]
 gi|306907436|gb|EFN37940.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|308121919|gb|EFO59181.1| hypothetical protein HMPREF9348_01654 [Escherichia coli MS 145-7]
 gi|308927140|gb|EFP72614.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|309702771|emb|CBJ02102.1| putative permease [Escherichia coli ETEC H10407]
 gi|310331864|gb|EFP99099.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|315061811|gb|ADT76138.1| predicted inner membrane protein [Escherichia coli W]
 gi|315137116|dbj|BAJ44275.1| putative permease perM [Escherichia coli DH1]
 gi|315615736|gb|EFU96368.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320176259|gb|EFW51320.1| hypothetical protein SDB_01232 [Shigella dysenteriae CDC 74-1112]
 gi|320180479|gb|EFW55410.1| hypothetical protein SGB_02379 [Shigella boydii ATCC 9905]
 gi|320185191|gb|EFW59971.1| hypothetical protein SGF_02727 [Shigella flexneri CDC 796-83]
 gi|320188825|gb|EFW63484.1| hypothetical protein ECoD_03818 [Escherichia coli O157:H7 str.
           EC1212]
 gi|320200054|gb|EFW74643.1| hypothetical protein ECoL_02890 [Escherichia coli EC4100B]
 gi|320640997|gb|EFX10481.1| putative permease perM [Escherichia coli O157:H7 str. G5101]
 gi|320646279|gb|EFX15206.1| putative permease perM [Escherichia coli O157:H- str. 493-89]
 gi|320651784|gb|EFX20164.1| putative permease perM [Escherichia coli O157:H- str. H 2687]
 gi|320657170|gb|EFX24979.1| putative permease perM [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662776|gb|EFX30108.1| putative permease perM [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667580|gb|EFX34495.1| putative permease perM [Escherichia coli O157:H7 str. LSU-61]
 gi|323156097|gb|EFZ42256.1| hypothetical protein ECEPECA14_1872 [Escherichia coli EPECa14]
 gi|323159346|gb|EFZ45331.1| hypothetical protein ECE128010_4397 [Escherichia coli E128010]
 gi|323169065|gb|EFZ54742.1| hypothetical protein SS53G_0606 [Shigella sonnei 53G]
 gi|323170238|gb|EFZ55891.1| hypothetical protein ECLT68_5126 [Escherichia coli LT-68]
 gi|323177386|gb|EFZ62974.1| hypothetical protein ECOK1180_3872 [Escherichia coli 1180]
 gi|323184449|gb|EFZ69824.1| hypothetical protein ECOK1357_2170 [Escherichia coli 1357]
 gi|323377608|gb|ADX49876.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323936385|gb|EGB32675.1| hypothetical protein ERCG_02401 [Escherichia coli E1520]
 gi|323944714|gb|EGB40781.1| hypothetical protein EREG_03729 [Escherichia coli H120]
 gi|323961287|gb|EGB56899.1| hypothetical protein ERGG_02238 [Escherichia coli H489]
 gi|323970985|gb|EGB66234.1| hypothetical protein ERHG_02956 [Escherichia coli TA007]
 gi|324020093|gb|EGB89312.1| hypothetical protein HMPREF9542_01215 [Escherichia coli MS 117-3]
 gi|324118163|gb|EGC12060.1| hypothetical protein ERBG_01897 [Escherichia coli E1167]
 gi|326340288|gb|EGD64092.1| hypothetical protein ECF_04004 [Escherichia coli O157:H7 str. 1125]
 gi|326344973|gb|EGD68717.1| permease PerM [Escherichia coli O157:H7 str. 1044]
 gi|331039908|gb|EGI12128.1| putative permease PerM [Escherichia coli H736]
 gi|331048767|gb|EGI20843.1| putative permease PerM [Escherichia coli M718]
 gi|331064429|gb|EGI36340.1| putative permease PerM [Escherichia coli TA271]
 gi|331074940|gb|EGI46260.1| putative permease PerM [Escherichia coli H591]
 gi|332087939|gb|EGI93064.1| hypothetical protein SB521682_2872 [Shigella boydii 5216-82]
 gi|332089723|gb|EGI94824.1| hypothetical protein SD15574_2893 [Shigella dysenteriae 155-74]
 gi|332092738|gb|EGI97807.1| hypothetical protein SB359474_2899 [Shigella boydii 3594-74]
 gi|332100710|gb|EGJ04056.1| PerM family permease [Shigella sp. D9]
          Length = 353

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 353


>gi|294501351|ref|YP_003565051.1| putative permease [Bacillus megaterium QM B1551]
 gi|295706698|ref|YP_003599773.1| hypothetical protein BMD_4599 [Bacillus megaterium DSM 319]
 gi|294351288|gb|ADE71617.1| putative permease [Bacillus megaterium QM B1551]
 gi|294804357|gb|ADF41423.1| putative membrane protein [Bacillus megaterium DSM 319]
          Length = 353

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 108/323 (33%), Gaps = 11/323 (3%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F+ L  +Y       P   A  I +   P+      K         ++  +         
Sbjct: 30  FLWLPVIYMFLKALLPFFIAAFITYLLHPLIEKTHDK-GVPRPLAILLIYIIFFGGIGFG 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
               +   + ++K+L  ++             + D           T  L +    KI  
Sbjct: 89  AYKSYPIFVEQVKDLNEQLPHFTNTYRHWVESIHD----------RTTSLPNGVHEKIEG 138

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                   ++      +      +   L +I +   +F+  +D  SI +    +    + 
Sbjct: 139 SIDDVEATLNVWLTKVAEGLKSLITSFLILIIIPFIVFYMLKDFSSIKKATAYVTPKKWH 198

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              ++    V + + +   G   + +  G++  +A W   VP  + LG I  +  +IP  
Sbjct: 199 KPGERFLSDVNESLGNYIRGQFFVCLIIGVIATAALWFFHVPYALLLGFIIGVTNIIPYF 258

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            PI     +  +    +I     + +   +  F+    L P +VG  + +  L     L+
Sbjct: 259 GPIIGAVPAAIIAATISIKLVITIVIIIFVLQFLEGNVLSPLIVGKSLHIHPLFIMLALL 318

Query: 318 GGVRTMGLLGLFIGPVLMALIAV 340
            G    G+LGL +   ++A+I +
Sbjct: 319 LGGEFGGVLGLILAVPILAVIKI 341


>gi|291617264|ref|YP_003520006.1| YdiK [Pantoea ananatis LMG 20103]
 gi|291152294|gb|ADD76878.1| YdiK [Pantoea ananatis LMG 20103]
          Length = 376

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 140/355 (39%), Gaps = 6/355 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+  L         I+ +I   L+ ++ F      A ++   +WP+            + 
Sbjct: 16  RQIDLPQMLFTLIFILLLIAACLWVVQPFILGFAWASMVVIATWPLMLKIQRLLWGRRSL 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++ T+ ++ LFI+P+  L    +     +++       H +P   WL+DIP       
Sbjct: 76  AVIVMTILLLLLFIIPVALLVNSLIDNSAPVIAWATQG--HMLPTLNWLNDIPMVGEKLY 133

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + L       I+++       +     F  R       + + +  M++     Y  G
Sbjct: 134 ASYQKLVAGGGAAIMAK---LQPYVGRTTGFLWRRPGTLAVFMIHLAVMLLFSVLLYWRG 190

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              +Q +      +          +  + +R+  LG+ + A+ +G++ G    ++G+P  
Sbjct: 191 EQAAQGIRHFAWRMAGRRGDAAVLLAGQAVRAVALGVVVTALVQGVLGGIGLAVSGIPYA 250

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  +  ++  G  +      +YL   G+    T L +W  +   + D  LRP L+
Sbjct: 251 TLLTVLMILCCLVQIGPLLVLVPAIVYLYWSGDTTWGTVLLIWSCVVGTL-DNILRPVLI 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                LP +    G++GG+   G++GLFIGPV++A+   +    +  +   +   
Sbjct: 310 RMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSYRLVSVWMHEVPAPQADP 364


>gi|269216089|ref|ZP_06159943.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
 gi|269130348|gb|EEZ61426.1| conserved hypothetical protein [Slackia exigua ATCC 700122]
          Length = 488

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 113/350 (32%), Gaps = 16/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +I+         L    A V+ A I         + F +           ++ + 
Sbjct: 24  IIGIVLIIAAAGYVSGVLSTPIAIVVWAAIFVLILRKPVAFFEAH-GIPRVLGTALSYLL 82

Query: 70  VMCLFIVPLLFLFYY---GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              +  +  + +F        ++  L++ V    Q    +    S     +  +   ++ 
Sbjct: 83  FALVLGLLGIVMFSPAFGLGDQLSSLIASVPSYVQEATRMWNDFSARYADIMQNTRVSEW 142

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    S  I        +    I      FG    +  + I F ++  F+   +  ++S+
Sbjct: 143 VDSMSSSLISWANDFAASSATGIVE----FGAGLANSLMIIGFALVVAFWLLMELPALSR 198

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++  L        +  + R   ++I    L    +    G+  G  Y +AGVP+   L +
Sbjct: 199 EMARLVPESRREGFDMLRRTTTRIIDGYLLATLAVCTIVGIACGILYIVAGVPNAGILAI 258

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  +  +IP         + + +    N   A  +F+   +    V   ++P L+   + 
Sbjct: 259 IVGVFNVIPVIGHWIGLILVVVIAAFTNPVLALVVFIGTIVIQEAVYTFVQPKLMANSVD 318

Query: 307 LPFLPTFFGLVGGVR-------TMG-LLGLFIGPVLMALIAVIWKESIMA 348
           +  +     L  G           G ++G+ I   + AL   ++      
Sbjct: 319 VHPVLVILALFIGSAAGSAVQGLFGSVVGMLISIPVAALAKALFVYYYER 368


>gi|206576471|ref|YP_002237996.1| inner membrane protein YdiK [Klebsiella pneumoniae 342]
 gi|288934905|ref|YP_003438964.1| hypothetical protein Kvar_2032 [Klebsiella variicola At-22]
 gi|206565529|gb|ACI07305.1| inner membrane protein YdiK [Klebsiella pneumoniae 342]
 gi|288889614|gb|ADC57932.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
          Length = 370

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 127/347 (36%), Gaps = 6/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    PQ ++  + + +I++  L+ ++ F      A  +   +WP+              
Sbjct: 6   QPRDIPQILLSVLFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRVLFGKRML 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +  T+ +  LF++P+  L    +     L+  +   N          S    G     
Sbjct: 66  AVLAMTLLLFLLFVIPIALLVNSLVDNSVPLIKLISSGNVTLPDFAWLNSVPLVGDKLYS 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L    S  +            +    A+  G       +    M++     Y  G
Sbjct: 126 AWHGLLDMGGSAIMAKVRPYIGTTTSWFVGQAAHIGK----LLVYCGLMLLFSALLYWRG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++         L          +  + +R+  LG+ + A+ + ++ G    ++GVP  
Sbjct: 182 EQVAYGFRYFATRLAAKRGDAAVLLAGQAVRAVALGVVVTALTQAVLGGIGLAISGVPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+     ++  G  +      I+L   G+    T L +W  +    +D  +RP L+
Sbjct: 242 ALLTVVMIFTCLVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSCVV-GTMDNVIRPVLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 301 RMGADLPMILILTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 347


>gi|32477422|ref|NP_870416.1| permease [Rhodopirellula baltica SH 1]
 gi|32447973|emb|CAD77493.1| predicted permease [Rhodopirellula baltica SH 1]
          Length = 435

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 107/340 (31%), Gaps = 11/340 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++  +   + L  LY       P+  A +   +  PI +             + +   
Sbjct: 68  RGMVTAIAAILTLGMLYIASDLLVPIAIAALAYLSLRPIEAKICRW-GVPQAAASAMLIA 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     + +  L+      +      +         V   L+ +     A +  T  L 
Sbjct: 127 GLFSSLALIIALLYSPAQQWLTSAPESLAAIRGKFQSVAEPLTAVDRAGTAVDDATIPLK 186

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +    ++           +     +           +  + +  FF    G  +  + 
Sbjct: 187 EDEPRIEVAYQKPSIVDETVLINQTGQ-------MLAFVAAIAVLTFFMLSTGDDLLNRT 239

Query: 189 DSLGEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +  +        K    + + +      +T I IG G+ +    WL G+P+ V  GV+
Sbjct: 240 LGVLPNSRSRGEVLKKIGDIQQSVGRYLAQITCINIGLGVAVTFVMWLVGMPTPVLWGVM 299

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            A+   IP   P++ T++           +  A        +   +  + + P ++G  +
Sbjct: 300 AALFNFIPYVGPLAATSIVFLAAASSFDTMSRACLTAFAFWLTTAVEGQFVTPTILGKTL 359

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           K+  +     +       GL G+F+   L+ +   I+   
Sbjct: 360 KVGPVVVLIAVAFWGFLWGLSGVFLAVPLLIVQRKIFASF 399


>gi|307821972|ref|ZP_07652204.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307736538|gb|EFO07383.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 381

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 98/331 (29%), Positives = 168/331 (50%), Gaps = 5/331 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + L  F A ++ A+++  T+WPIY   ++        T+ A++ T+ +  L +VPL +  
Sbjct: 19  WVLHSFLALLVWAVVLAITTWPIYQRLLASNEIHGKVTWGALLLTLLIGALILVPLGYGL 78

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E + L   +  A   GIP P WL  IP     ++    +      +   S  +L 
Sbjct: 79  SRLLNEAQSLGQILTEAQNVGIPPPVWLETIPMIGNWAKDTWMNALGNPVVANESLHWL- 137

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             G      +   F    L      +  ++ LFF Y+ G  +SQ + +    LF     +
Sbjct: 138 --GTGSAITYTKDFASQLLHRFFGFLLTLLVLFFVYQHGTGLSQYVLATNRKLFGETGVR 195

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
            +      +R+T  G+ ++ +GEGL+LG  Y LAG+     LG +T + AMIP  A + F
Sbjct: 196 YAIHATAAVRATVNGLVLVGLGEGLLLGVGYALAGLSHPAMLGALTGVFAMIPFAAKLIF 255

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            A S+ L+ +G++   + LF++G + + + D  +RP L+GG +KLPF+ T  G+ GG+  
Sbjct: 256 GACSLVLIAEGHMAAGSSLFVFGVVVILLADNYVRPRLIGGAVKLPFIWTLLGIFGGLEN 315

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            GLLGLF+GP LMA++  IW++ +  + + K
Sbjct: 316 FGLLGLFLGPTLMAVLISIWRDWVADMDKPK 346


>gi|170685913|ref|ZP_02877136.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0465]
 gi|196033171|ref|ZP_03100584.1| sporulation integral membrane protein YtvI [Bacillus cereus W]
 gi|218905823|ref|YP_002453657.1| sporulation integral membrane protein YtvI [Bacillus cereus AH820]
 gi|254687404|ref|ZP_05151260.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724967|ref|ZP_05186750.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A1055]
 gi|170670377|gb|EDT21117.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0465]
 gi|195994600|gb|EDX58555.1| sporulation integral membrane protein YtvI [Bacillus cereus W]
 gi|218535804|gb|ACK88202.1| sporulation integral membrane protein YtvI [Bacillus cereus AH820]
          Length = 372

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 118/346 (34%), Gaps = 10/346 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLVFVIVATVAGFYALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K 
Sbjct: 311 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKA 356


>gi|110798580|ref|YP_694976.1| hypothetical protein CPF_0522 [Clostridium perfringens ATCC 13124]
 gi|110673227|gb|ABG82214.1| putative membrane protein [Clostridium perfringens ATCC 13124]
          Length = 377

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 107/329 (32%), Gaps = 8/329 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMCLFI 75
            LY   G   P +  + I F                        +F   +  +  +    
Sbjct: 34  FLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNGKFFKGMKRSFSITLTFLFFILAIT 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLK 134
           + +LF+    +  +  L++ +                +        +     L +     
Sbjct: 94  LFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMWKEI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   + +    + ++  F        +++ LS+I  I  L         +   + +    
Sbjct: 154 LKVTSQIVGTSLGYLLDFTLGITYGVINFFLSLILAIYMLASKEILISQLKLIIYAFVSK 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++  +  ++     LG    A+  G++      +  +P  + + V+  + A+I
Sbjct: 214 NKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVTALI 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P       T  S ++++  +   A    ++  +   +    + P +VG  I L  L   F
Sbjct: 274 PVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALWVMF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++ G    G++G+ IG  +  ++  I K
Sbjct: 334 AMIVGGSLFGIIGMLIGIPIFGVVFKILK 362


>gi|300723562|ref|YP_003712867.1| putative permease [Xenorhabdus nematophila ATCC 19061]
 gi|297630084|emb|CBJ90721.1| putative permease (PerM family) [Xenorhabdus nematophila ATCC
           19061]
          Length = 355

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 113/355 (31%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I+  +I+ +    +YF  G  APVL+A+++ +           K   S   
Sbjct: 10  RRRFTDPQVIVLSVILLVGFGIIYFFNGILAPVLAAIVLAYLLEWPTVQLE-KLGCSRAL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I     M +  + +L +      +   L S +             L      +    
Sbjct: 69  SVSIVLTVFMGISSLVILIVAPTVWQQGLNLFSDLPNMLNRFNVYAHTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + + +FF  +D 
Sbjct: 125 ----VDAGIIDMIADNLRSKISLAGESVFQFSVASLIGLLTLAIYLILVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  +          K+   + + I +   G     I   +     +   G+   
Sbjct: 181 NQMVAALQRVLPRNHG-LAGKLWNEMNQQITNYIRGKVTEMIILTVCTYIVFAFFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   I   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGLSVLIPYIGTVIVTIPVIIVALFQWGLGADFWTLFIAYLVVQGLDGNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     ++      G  G+F    L  LI  +         E ++
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLIKAVIHVWPEDKIEGEK 354


>gi|323464925|gb|ADX77078.1| conserved membrane protein, putative [Staphylococcus
           pseudintermedius ED99]
          Length = 365

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 95/315 (30%), Gaps = 11/315 (3%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           +  + +   P       +          I  +++  +    +  +      +++ L+ ++
Sbjct: 47  SGFLFYICLPFQKMLEKR-HLPRWASITIILLALTAMMAAVIGVIGPVIATQIENLIHQI 105

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               +    +  +  D              L    + KI       +     +   +   
Sbjct: 106 PFIQREAERLINFALDQR----------DRLPDQVTEKINDIVSYFSQMASDLLSNSLNI 155

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               +     +I +   L +  +D       + ++       +   + + + + + S   
Sbjct: 156 ISSIVSTLFLLILVPFFLIYMLKDHERFIPAVANIFNGERKIFIVNLLKDLNQTLMSYIQ 215

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G   +++  G +L   Y + G+   + L +   +  MIP   P      +  L +  +  
Sbjct: 216 GQVTVSLILGAILYIGYSIIGLEYTMLLVMFAIVANMIPFLGPWMAFLPAGILGLIQSPT 275

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               + +   I   +    + P ++G  + +  L     ++      G   + +   L A
Sbjct: 276 TFIWVCVITLIAQQLEGNVITPNVMGKSLNIHPLTIIIVILASGSLGGFTLILVAVPLYA 335

Query: 337 LIAVIWKESIMAIKE 351
           ++  I +       +
Sbjct: 336 VLKTIVRNVFKYRHQ 350


>gi|323187112|gb|EFZ72428.1| hypothetical protein ECRN5871_4699 [Escherichia coli RN587/1]
          Length = 370

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/356 (17%), Positives = 135/356 (37%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVVQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|330833351|ref|YP_004402176.1| putative permease [Streptococcus suis ST3]
 gi|329307574|gb|AEB81990.1| probable permease [Streptococcus suis ST3]
          Length = 376

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 109/347 (31%), Gaps = 7/347 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------KKEESSTFLAVIATVSVMC 72
           I  ++  L G    +    I  F                   K+   +   V   +    
Sbjct: 28  IYGAIQQLLGSMNSLFIGAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFAL 87

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    ++ +    +  + ELVS    A    +       +  G +             Q 
Sbjct: 88  IVTGLVVIVLPTLVTTVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQL 147

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +   + L T  +  +    +      +   ++  F +  L           + L +  
Sbjct: 148 KNLTLISSLVTPILSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATL 207

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     I  ++        +   + A   G ++  +Y L+G+P     G++  +++
Sbjct: 208 PEKAVRVVNYIGEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLS 267

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            +P   P S   +S   +   N   A        I   I    + P +VG  + LP L T
Sbjct: 268 FVPYIGPFSACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFT 327

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               + G    GLLG+     + A++  + +E + +  + + ++ + 
Sbjct: 328 LAAALIGGNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQGELLAE 374


>gi|166031304|ref|ZP_02234133.1| hypothetical protein DORFOR_00991 [Dorea formicigenerans ATCC
           27755]
 gi|166028709|gb|EDR47466.1| hypothetical protein DORFOR_00991 [Dorea formicigenerans ATCC
           27755]
          Length = 386

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/361 (13%), Positives = 108/361 (29%), Gaps = 20/361 (5%)

Query: 6   LNPQGIMRWMIMFIILV-------SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--- 55
              + I+   ++ ++L         L ++     P L    I F      +         
Sbjct: 10  KIRELILFTALLIVVLWKYEEVLEVLGYVGHLIFPFLLGGAIAFVLNVPMNFIERHLFTE 69

Query: 56  ---------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
                    + +     +     V+ +  V +  +    +     L   +     H    
Sbjct: 70  KVRKNKVADKLARPVSLLSVLCIVVGVLTVVIFGVVPQLVNTFGNLGQSITQFIPHAQAW 129

Query: 107 -PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                      +                 I        N ++     A         + +
Sbjct: 130 GKEVFHGNKEVVELINSVQFDWDKIVETLIDFLKNGAGNMLNSTLTAAKSIISGVSTFVI 189

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +F I  L    + G    + L +           ++S +      S   G  + A+  
Sbjct: 190 AFVFAIYILLQKKKLGIQAKKVLFAFVRRGRAEAVVEVSSLTYSTFSSFLTGQCLEAVIL 249

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G +   A  +  +P  + +G+  A  A+IP        AV  +L+   +   A    +  
Sbjct: 250 GSMFVLAMTIFRLPYALLVGIFIAFTALIPIFGAFLGCAVGAFLIFMVDPMKALMFIVLF 309

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   I    + P +VG  + LP +     +  G   MG++G+ I   ++++   +++E 
Sbjct: 310 LVLQQIEGNLIYPHVVGNSVGLPSIWVLAAVSIGGSLMGVVGMLIFIPIVSVAYALFREI 369

Query: 346 I 346
           +
Sbjct: 370 V 370


>gi|238919126|ref|YP_002932640.1| hypothetical protein NT01EI_1197 [Edwardsiella ictaluri 93-146]
 gi|238868694|gb|ACR68405.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 359

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 114/356 (32%), Gaps = 12/356 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I    I+ +    +YF  G  AP+L A+++ +               S  +
Sbjct: 10  RRRFTDPQAIALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTHKLQ-LVGCSRLW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + ++ +L +      +   L+S +             L      +    
Sbjct: 69  AVCVVLLLFIGIVLLTMLVVIPIAWQQGLALMSDMPKMVTRFYEYAATLPRRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    + + +         + + +F+    +  +   + ++ + + +FF  +D 
Sbjct: 125 ----MDAGIIDVVVENLRARMALMGESVLKFSLASLVGLVTLAIYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  +          ++   + + I +   G  +  +  G+     + + G+   
Sbjct: 181 GQMLNALRRVLPRE-RGLAGQVWLEMNQQITNYIRGKVVEMVVVGVATYLVFLVLGLNYG 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  I  +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLSVLVGISVLIPYIGAVLVTIPVVLVALFQWGMGADFWSLFIAYLVVQGLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L    + L  L     ++      G  G+F    L  L+  +          +   
Sbjct: 300 LYSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDDFCNDAPP 355


>gi|291288291|ref|YP_003505107.1| hypothetical protein Dacet_2389 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885451|gb|ADD69151.1| protein of unknown function UPF0118 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 342

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 127/341 (37%), Gaps = 11/341 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N + ++    + ++L+ +Y ++   +    +  I +   P      +  +       +I
Sbjct: 8   MNYKNLLVIAGVALVLLLMYRIQSIISIFAVSFFIAYLLDPAIDKLETW-KIPRAAGILI 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  + +  +L++  Y   E+  L + V           +  ++      + E    
Sbjct: 67  FMVLLTIILVCAMLYVVPYLYYEINYLANMVPDIVNSVTNTAQNFAERMNIYVSLEGIKN 126

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+                 +       S          ++I  + I +F+F +D   I+
Sbjct: 127 QLAPKAGAIAKQTLAAALGILSSASTAVSSI--------VNIAIIPILVFYFLKDFDRIN 178

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++       +    K+      K++ + F G  I+A   G++      + G+   V +G
Sbjct: 179 TKIFDALNRKYDNDIKRYITEFDKILSAYFRGQLIVAAILGVLYTIILLVVGIKPAVLIG 238

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +++ +++++P    I   A S+ L      +I +   +F+  A+   I    + P +VG 
Sbjct: 239 IVSGVLSVVPYLGFIIGFAASLILAFVQFQDILHPLMVFIGFAVVQAIEGNLITPKIVGE 298

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + L      F L+ G    G+ G+ I   + A I ++  E
Sbjct: 299 SLGLHPTAVIFALLAGGSLFGIGGMIIALPVAAFIKILLSE 339


>gi|302386088|ref|YP_003821910.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
 gi|302196716|gb|ADL04287.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
          Length = 379

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 114/345 (33%), Gaps = 7/345 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCL 73
           ++  +  + GF +P L+  ++ F                            +  V V+ +
Sbjct: 31  LIAMVMKVIGFISPFLAGGVMAFILNVPMRRIEKMLPVKEGSRIRRPLSLCLTLVFVIGV 90

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQS 132
            ++ +  +       +  L + +             L +  P    +             
Sbjct: 91  LLLVIFVVMPQLFETLISLQNSIPAFLAGVKEEAERLFAQNPEIADSISGIQIDWKAFLE 150

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +   +    + +      A         + ++++F +  L           + + +  
Sbjct: 151 SVVGFLSTGAGSVLSSTVSAAMSIINGVTTFVIALVFAVYILLQKETLSRQFQKLMKAFL 210

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                A   +I  +  +   +   G  + A+  G +      +  +P  + +GV+ A  A
Sbjct: 211 PEGVMARTLEILTLASETFSNFLTGQCLEAVILGSMFFFTLSVFRLPYGLLIGVLIAFTA 270

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP        A+  +L++     +A    +   +   +    + P +VGG + LP +  
Sbjct: 271 LIPMFGAFIGCAIGAFLMLMVKPLDAVVFLIIFFVLQQLEGNFIYPHVVGGSVGLPSIWV 330

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              +  G   MG++G+ I   L +++  I +E++    E  +++ 
Sbjct: 331 LVAVTIGGSAMGIVGMLIFIPLSSVLYAILRETVNGRLERNKRLK 375


>gi|253700636|ref|YP_003021825.1| hypothetical protein GM21_2015 [Geobacter sp. M21]
 gi|251775486|gb|ACT18067.1| protein of unknown function UPF0118 [Geobacter sp. M21]
          Length = 354

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/344 (20%), Positives = 135/344 (39%), Gaps = 5/344 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I  +  +  I   + F      P+  ALIIG  + P Y   +++  +     + +  ++V
Sbjct: 10  IAAFFTVAAIAAIVLFAAPILKPLAWALIIGIATMPHYQRILNRFPDRPGRASGLMLLAV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               ++P  +L     +   E   ++    Q      R  S     +   +     +   
Sbjct: 70  AVCLVLPASWLVITAAVNAPEWYRQLEQMIQEVT---RTSSGALSQIPYYDRIMSLVERF 126

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     + ++G   I   A+       D+  +++  +  LFF YRDG         
Sbjct: 127 GIDLGNIGGKIASSGSTVILNAATNMVRNLFDFIFTLLVALFLLFFIYRDGERAVALCIG 186

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +  +  +  +  +  +G  +    +G++ G  YW+AGVP+ V    +TAI
Sbjct: 187 KLAPNPRK-AQHYATQIRSITTAVAVGTILTCCTQGVIAGLGYWVAGVPAPVFFAALTAI 245

Query: 251 MAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A+IP     I +  +     + G+   A  L LW    +   D  +RP  +G    +  
Sbjct: 246 AALIPVVGTAIIWVPIVALTAVTGSYLTALLLALWCVFFVGFSDNAIRPLAIGAASDISV 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    G + GV  MGLLGL IGPV+ A++  +W +++ A  + +
Sbjct: 306 LAVVTGALCGVVMMGLLGLIIGPVIFAVLFSMWDDAVSAAGDTE 349


>gi|153855827|ref|ZP_01996813.1| hypothetical protein DORLON_02834 [Dorea longicatena DSM 13814]
 gi|149751868|gb|EDM61799.1| hypothetical protein DORLON_02834 [Dorea longicatena DSM 13814]
          Length = 447

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/386 (12%), Positives = 111/386 (28%), Gaps = 27/386 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-----------LYFLKGFFAPVLSALIIGFTSWPIYS 49
           +R+           ++  I++             L  +     PVL    I +   PI  
Sbjct: 23  LRQQFNRGMTYFLVIVACILVYFAMLRVEAISNTLSKILSILKPVLYGCGIAYLLNPIVK 82

Query: 50  SFISKKEE--------------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
           S  +                  S +   ++A V ++ +    +  L    +  ++ L+  
Sbjct: 83  SVDAYLVPVLEKHMKKEKAKKVSRSIGVIVALVVLITVVSTLINMLIPELITSIRNLIFT 142

Query: 96  VVLANQHGIPVPRWLS--DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           +       +     +   D            +  +  Q              +  +    
Sbjct: 143 LPAQINQLVKEINNIQLDDSTTTAVLKNAMNEASASLQKWMRTDLLDKVNEVMTHLTVGL 202

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               M      + +I  +  LF          +   ++           I+    ++   
Sbjct: 203 YTLIMEMFHAVIGVIVSVYILFGKETFINQSKKAAYAIFPAERANLLIHIAVKTNEIFGG 262

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G  I +I  G++      +  +P  + + VI  +  +IP   P      S  L+   
Sbjct: 263 FIIGKIIDSIIIGILCFIGTSILKMPYAMLVSVIVGVTNVIPFFGPYIGAIPSAVLIALA 322

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +        ++  +        L P ++G    L        ++ G    G+LG+  G  
Sbjct: 323 DPMKGIYFLIFILLLQQFDGNILGPKILGNSTGLSAFWVIVSILLGGGLFGILGMLFGVP 382

Query: 334 LMALIAVIWKESIMAIKENKEKISSN 359
             A++  I K  +    E K+  + +
Sbjct: 383 TFAVVYYIIKLLLDNQLEKKKLPTDS 408


>gi|319891985|ref|YP_004148860.1| hypothetical protein SPSINT_0695 [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161681|gb|ADV05224.1| hypothetical protein SPSINT_0695 [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 365

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/315 (9%), Positives = 95/315 (30%), Gaps = 11/315 (3%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           +  + +   P       +          I  +++  +    +  +      +++ L+ ++
Sbjct: 47  SGFLFYICLPFQKMLEKR-HLPRWASITIILLALTAMMAAVIGVIGPVIATQIENLIHQI 105

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               +    +  +  D              L    + KI       +     +   +   
Sbjct: 106 PFIQREAERLINFALDQR----------DRLPDQVTEKINDIVSYFSQMASDLLSNSLNI 155

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               +     +I +   L +  +D       + ++       +   + + + + + S   
Sbjct: 156 ISSIVSTLFLLILVPFFLIYMLKDHERFIPAVANIFNGERKIFIVNLLKDLNQTLMSYIQ 215

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G   +++  G +L   Y + G+   + L +   +  MIP   P      +  L +  +  
Sbjct: 216 GQVTVSLILGAILYIGYSIIGLEYTMLLVMFAIVANMIPFLGPWMAFLPAGILGLIQSPT 275

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               + +   I   +    + P ++G  + +  L     ++      G   + +   L A
Sbjct: 276 TFIWVCVITLIAQQLEGNVITPNVMGKSLNIHPLTIIIVILASGSLGGFTLILVAVPLYA 335

Query: 337 LIAVIWKESIMAIKE 351
           ++  I +       +
Sbjct: 336 VLKTIVRNVFKYRHQ 350


>gi|213581770|ref|ZP_03363596.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 370

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 3   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 63  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 123 AGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHIGR----FMMHCALMLLFSALLYWR 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 179 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 239 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 297

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 298 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 355


>gi|197285426|ref|YP_002151298.1| hypothetical protein PMI1567 [Proteus mirabilis HI4320]
 gi|227355910|ref|ZP_03840302.1| possible permease [Proteus mirabilis ATCC 29906]
 gi|194682913|emb|CAR43285.1| putative membrane protein [Proteus mirabilis HI4320]
 gi|227163898|gb|EEI48800.1| possible permease [Proteus mirabilis ATCC 29906]
          Length = 362

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/355 (13%), Positives = 109/355 (30%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ I   +I+      +YF  G  AP+L A+++ +           K   +  +
Sbjct: 10  KRRFADPQVIALVVILIAGFSIIYFFSGILAPLLVAIVLAYLLEWPTHLLE-KLGCARIW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I     + +  + +L L      +   L+S +           R L +    +    
Sbjct: 69  AVSIVLTLFIGISAIVILILAPTVWQQAMTLISDIPNMINKFNAFARELPERFPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +   +     +   + + + +    +  +   + +I + +  FF  +D 
Sbjct: 125 ----MDVGIVDMMAENLRSKFSTVAESVLKVSLASLIGVITLSIYLILVPLMTFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   V + I +   G     +  G+     +    +   
Sbjct: 181 QQMLNAVRRVLP-KNRILAAQVWIEVNQQITNYIRGKVTEMVIVGVFTYFVFAFFDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+  +  ++P    +  T   I +     G   +   LF+   +   +    L P 
Sbjct: 240 VLLAVLVGVSVLVPYVGAVLATIPVIVIALSQWGLGSDFWALFIAYLVVQGLDSNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + +  L     ++      G  G+F    L  LI  +       I     
Sbjct: 300 LFSEAVNMHPLVIILSVIIFGGMWGFWGVFFAIPLATLIKAVLHALPDEIANEPP 354


>gi|295096092|emb|CBK85182.1| Predicted permease [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 371

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/350 (17%), Positives = 131/350 (37%), Gaps = 6/350 (1%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            
Sbjct: 4   LRQPRDVAQILLSVLFLAIMIIACLWIVRPFVLGFAWAATVVVATWPLLLRLQKLLFGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               ++ T+ +  LFI+P+  L    +     ++  V   +     +    S    G   
Sbjct: 64  GLAVLVMTLLLFLLFIIPIALLVNSLVDSSGPVIRAVTSGDMTLPDLAWLNSIPVVGAKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L    S  +            +    A+  G     + +    M++     Y 
Sbjct: 124 YSGWHSLLEMGGSALMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCTLMLVFSALLYW 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    ++GVP
Sbjct: 180 RGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAVLGGIGLAISGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                 V+  +  +   G  +      I+L   G+    T L +W  +    +D  +RP 
Sbjct: 240 YATIFTVVMLMTCLAQLGPLLVLVPCIIWLYWTGDTTWGTVLLVWSCVV-GTMDNVIRPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 299 LIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEV 348


>gi|261251647|ref|ZP_05944221.1| putative membrane protein [Vibrio orientalis CIP 102891]
 gi|260938520|gb|EEX94508.1| putative membrane protein [Vibrio orientalis CIP 102891]
          Length = 374

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 136/352 (38%), Gaps = 5/352 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +I+ +++ +   +K F  PV+   II     P+     S         A  
Sbjct: 17  MVESAIRIGLIVILLMFTYDIIKPFILPVIWGAIIAVALMPVCQKLESLYGGKRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ + L + PL+ +    +      +  +   N         +++ P           
Sbjct: 77  IALAGIALLVTPLVMVSGSIVDGSTHALHVLQEGNIKIPGPQPSVAEWPLVGEKLHEVWS 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             ++     I +      + + ++           L   L  I  +     F     S+S
Sbjct: 137 LFANNLEKAIQTFMPQIKSALTYLLGMVGNV----LGSLLLSILSLAIAAGFMTYSKSLS 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++   +     +  + ++   I+S  LG+  +A  + L++G+ +++ G+P    L 
Sbjct: 193 AGLTTIAVRVAGDNAQSWASMIAATIKSVLLGVIGVAAIQSLLIGAGFFVFGIPGAGILT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I  I+ +    A +    +  Y+ +  +   AT   +W  +   + +   +P L+G  +
Sbjct: 253 LILMILCIAQLPALLVVLPIVGYMYMTQDTTTATLFTVW-VVVAALSENIFKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +P      G +GG+   G++GLF+G V++A+   ++   +   K  +EK +
Sbjct: 312 DIPMPVILLGAIGGMLIYGIVGLFLGAVILAIWYELFVWWLNIEKAQQEKAA 363


>gi|83748965|ref|ZP_00945974.1| Hypothetical Protein RRSL_01236 [Ralstonia solanacearum UW551]
 gi|207721704|ref|YP_002252143.1| permease transmembrane transport protein [Ralstonia solanacearum
           MolK2]
 gi|207744194|ref|YP_002260586.1| permease transmembrane transport protein [Ralstonia solanacearum
           IPO1609]
 gi|83724388|gb|EAP71557.1| Hypothetical Protein RRSL_01236 [Ralstonia solanacearum UW551]
 gi|206586866|emb|CAQ17451.1| permease transmembrane transport protein [Ralstonia solanacearum
           MolK2]
 gi|206595599|emb|CAQ62526.1| permease transmembrane transport protein [Ralstonia solanacearum
           IPO1609]
          Length = 356

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 108/340 (31%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +  I L  L  L     P + A I+ +   P        +         + 
Sbjct: 10  TKRTLAWIAVAVIFLALLKLLAPTLTPFVFAFILSYILHPGVEWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  L +  +L +      E+  +  ++                 P            
Sbjct: 69  VLLLAVLAVALMLLILAVLQREIPAIREQLPGMLSKLNAAV-----TPRLAEMGVHVRFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + L          + +     +    G   +     +  + I +F+   D   + +
Sbjct: 124 FPGLRKLLTEQLASSPEDVMSTALNYLRVSGSAAVQLLGIVFLVPIVMFYLLMDWNMLMR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +L+ +    +    ++++     ++     G  I+ +   +   S   LAG    + +G+
Sbjct: 184 RLEGVVPRRWIGKTRELAAETDGLLSQYLRGQIIVMLVLAVYYSSGLALAGFDVALPIGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I   LL  GN++    + +   I   +    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGIGLTLAILSALLQFGNLYGLLAVAVVYGIGQVLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQ 343


>gi|114329061|ref|YP_746218.1| hypothetical protein GbCGDNIH1_2397 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317235|gb|ABI63295.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 678

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/375 (13%), Positives = 93/375 (24%), Gaps = 59/375 (15%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LY  +    P+  A+++ F   P+ S    +         V+A V  + + +     +  
Sbjct: 47  LYLGREVLVPITLAVLLSFVLSPLVSVL-RRLWMPRFIAVVLAVVLALGIILALGGLIG- 104

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDI------------------------------ 113
               ++ +L   V       +     L D                               
Sbjct: 105 ---TQLAQLADNVPRYQSTILDKADLLRDWAMTRAGHLAERFGSFGHERSARPPSSQTST 161

Query: 114 ----------------------PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
                                 P  M  S L           ++                
Sbjct: 162 PENQASPTSPAQSTHNQTALPPPQRMADSNLQPHVGREGAGKEVQPVPVTIAPVNPSPLE 221

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A R+    +    S   + I   F       +  ++  L                   +
Sbjct: 222 IAERYLSPIIAPLASTGIVFIVAIFMLMRLEDLRDRMIRLFGSSDLHRTTLAMDDAASRL 281

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
              FL    +    GL+ G   W+ GVPS    GVI  +M  +P           I L  
Sbjct: 282 SRYFLAQLGLNAAFGLITGLGLWMIGVPSPALWGVIAGLMRFVPYIGTPLAAIPPIALAA 341

Query: 272 KG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
                   A        +   ++ + + P L G    L  L      +      G +GL 
Sbjct: 342 AVDPGWSMALWAAGMFLVAESLMGQVVEPLLYGHSTGLSPLAVMLSAIFWTWLWGSIGLI 401

Query: 330 IGPVLMALIAVIWKE 344
           +   L   + V+ + 
Sbjct: 402 LSTPLTVCLVVMGRH 416


>gi|323967937|gb|EGB63349.1| hypothetical protein ERJG_00967 [Escherichia coli M863]
 gi|323977329|gb|EGB72415.1| hypothetical protein ERFG_00851 [Escherichia coli TW10509]
 gi|327252143|gb|EGE63815.1| hypothetical protein ECSTEC7V_2990 [Escherichia coli STEC_7v]
          Length = 353

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 353


>gi|242239096|ref|YP_002987277.1| inner membrane protein [Dickeya dadantii Ech703]
 gi|242131153|gb|ACS85455.1| protein of unknown function UPF0118 [Dickeya dadantii Ech703]
          Length = 364

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 130/347 (37%), Gaps = 4/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I  +I+   + ++ F      A ++   +WP+     S          ++
Sbjct: 11  LARIVFSLLFIGILIIACFWVVQPFILGFAWASMVVIATWPLLIKLQSMLWGYRFLAVIV 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            TV ++  F++P   L    +     L++      +   P   WL  IP           
Sbjct: 71  MTVLLVLFFVIPTSILVSSVIDNTSTLIAWAGSQERITPPSLDWLRSIPMFGEKLHSSWY 130

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L H     ++++       +     +A         + +    M++     Y  G  ++
Sbjct: 131 GLVHSGGAAVMAK---VQPYVGQAASWAVAQAAHIGRFLMHCALMVLFSILLYSKGDQVA 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L     +    +  + IR+  LG+ + AI + L+ G    L+G+P    L 
Sbjct: 188 LGVRRFAMRLGKQGGEAAVILAAQSIRAVALGVVVTAIVQSLLGGIGLALSGIPYTTLLT 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  +   G  +      I+L   G+    T L +W  I   + D  +RP L+    
Sbjct: 248 VLMFLSCVAQLGPLMVLVPAIIWLYWTGDTTWGTILLVWSCIVGTL-DNVIRPLLIRMGA 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            LP L    G++GG+   G++GLFIGPV++A+   +    +    E+
Sbjct: 307 DLPMLLILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLSAWMKDTPES 353


>gi|168212573|ref|ZP_02638198.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
 gi|170715715|gb|EDT27897.1| putative membrane protein [Clostridium perfringens CPE str. F4969]
          Length = 377

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 107/329 (32%), Gaps = 8/329 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMCLFI 75
            LY   G   P +  + I F                        +F   +  +  +    
Sbjct: 34  FLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFILAIT 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLK 134
           + +LF+    +  +  L++ +                +        +     L +     
Sbjct: 94  LFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMWKEI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   + +    + ++  F        +++ L++I  I  L         +   + +    
Sbjct: 154 LKVTSQIVGTSLGYLLDFTLGITYGVINFFLALILAIYMLASKEILISQLKLIIYAFVSK 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++  +  ++     LG    A+  G++      +  +P  + + V+  + A+I
Sbjct: 214 NKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVTALI 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P       T  S ++++  +   A    ++  +   +    + P +VG  I L  L   F
Sbjct: 274 PVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALWVMF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++ G    G++G+ IG  +  ++  I K
Sbjct: 334 AMIVGGSLFGIIGMLIGIPIFGVVFKILK 362


>gi|229175304|ref|ZP_04302819.1| Sporulation integral membrane protein YtvI [Bacillus cereus MM3]
 gi|228608136|gb|EEK65443.1| Sporulation integral membrane protein YtvI [Bacillus cereus MM3]
          Length = 365

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +      +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV++ L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVILVLLNTLHKARV 351


>gi|167633918|ref|ZP_02392241.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0442]
 gi|254741741|ref|ZP_05199428.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Kruger B]
 gi|167530719|gb|EDR93421.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           A0442]
          Length = 372

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 118/346 (34%), Gaps = 10/346 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLVFVIVATVAGFYALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVIDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K 
Sbjct: 311 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKA 356


>gi|303246658|ref|ZP_07332936.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491998|gb|EFL51876.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 371

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 129/341 (37%), Gaps = 2/341 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  ++   + ++   L+ F   ++  +++     P++    +   +  T  A+I T  
Sbjct: 11  AFLLIILAAALYLAYVVLRPFVDILIIGVVLSALFRPVHRRIDAFCGKRPTVSALITTCL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLS 128
           +    I+P+ F     + +  + V+ +                 +   +         L 
Sbjct: 71  IFTCLIIPVFFFLGSLVTQGVQSVNALQAHLSSMDFNAFFSHEAVAPYINWLHEHLPFLD 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +         +  N    +    +     F    ++ + +I  LFF  RDG ++  ++
Sbjct: 131 VKKLALRADLLSISKNAGQILLNSGTTIIGNFFVLTMNFVILIFVLFFLIRDGEAMLARV 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   L      +I R +  V +S  LG  +IA+ +G   G   ++ G+       ++ 
Sbjct: 191 RYLLP-LSTDQEDRIFRQLDDVAKSVILGAFLIALAQGAAGGLGLFIVGIQPFFWGCMMG 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               +   G  I +  V++YL++ G       L  WGA+ +  +D  +RP L+    K+ 
Sbjct: 250 FASLIPVVGTAIIWLPVALYLIVTGQWQWGVFLIAWGALVVSSIDSIMRPILMRNRSKMS 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               F  ++GG++  G LG+  GP+++    V+        
Sbjct: 310 TFWVFLAIIGGIKFFGALGILYGPLVLGFAMVMLSLYAEDY 350


>gi|326383536|ref|ZP_08205222.1| hypothetical protein SCNU_11385 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197620|gb|EGD54808.1| hypothetical protein SCNU_11385 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 381

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 112/352 (31%), Gaps = 18/352 (5%)

Query: 12  MRWMIMFIILVSL----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +I+   L +L     + +  F PV  A+++     P+ +     +    +   + A 
Sbjct: 33  WRLLIIAAGLYALGKLFLYAEEVFVPVAIAILLSALLSPLVAWLQRHRV-PRSAGVLSAV 91

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V    +    L F+    ++ +  +   V  +                      +    +
Sbjct: 92  VLTFAIIAAGLTFVVQQLIVGVPRMSGDVAASIAKARRWLETGRLHLDSDSLRNVSNDMI 151

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  +  +              I   A     +      + +  I  L FF  DG  I   
Sbjct: 152 TWLKEHE------------ASIATGALDTATVATKLVTAALLTIFLLIFFLYDGHRIWDF 199

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +       + +       + ++S      ++A  + + +G    +  VP  + L  +
Sbjct: 200 VTKIVPSAHRVHVRGAGDAGYRTLQSYVRATVLVAFIDAVFIGIGLAILRVPMVMPLMAL 259

Query: 248 TAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP    ++      +  L     F A  + +   + + +    L+PFL+G  +K
Sbjct: 260 IFLGAFIPIVGSVAAGSLAVLVALATHGWFTAVLVVVVLIVVMQVEGHVLQPFLLGRSVK 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L  +     +  G+   G++G  +   ++A              +  E +  
Sbjct: 320 LHPVAVILVIAIGLMVAGIVGGLLAVPVLAFANTAITYRPAEGADQDEFVEE 371


>gi|315654644|ref|ZP_07907550.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315491108|gb|EFU80727.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 487

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + +IL  +  +   F P+  AL++     P++           T  A+I+ +
Sbjct: 68  RFLTIVAALGLILYGITKVSIVFIPLAIALLLTLLLEPMHFRLQKW-HIPKTLSAIISLL 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +             L+ K        +                +L  + + 
Sbjct: 127 VGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKALAWL--------SDGPLKLDQEQIE 178

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T   T     I   A            +I+  +  LFFF +DG  I   L
Sbjct: 179 KYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTTILISLFCLFFFLKDGRQIWIWL 238

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VI 247
             +          + +      +        ++A+ + + +     + G  S      ++
Sbjct: 239 IRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVDSVFISIGAAVLGAGSMTIPLALL 298

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I A IP    ++      + LL+      A  + +       I    L P L+   + 
Sbjct: 299 IFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLIVILAVQQIESNVLHPMLMSSAVN 358

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L    G+  G    G++G  +   ++A    + 
Sbjct: 359 LHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTVV 394


>gi|301056100|ref|YP_003794311.1| putative transmembrane protein [Bacillus anthracis CI]
 gi|300378269|gb|ADK07173.1| putative transmembrane protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 372

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLVFVIIATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 311 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 358


>gi|146282264|ref|YP_001172417.1| putative lipoprotein [Pseudomonas stutzeri A1501]
 gi|145570469|gb|ABP79575.1| lipoprotein, putative [Pseudomonas stutzeri A1501]
 gi|327480512|gb|AEA83822.1| putative lipoprotein [Pseudomonas stutzeri DSM 4166]
          Length = 364

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 157/345 (45%), Gaps = 6/345 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N + + + +++ ++   L+ L  F + +  A ++ F SWP+          ++T  A 
Sbjct: 2   LNNDRLLAQILLLGLLAACLWVLAPFASALFWAAVLAFASWPVMRLLTRWLNGNATLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           + T S M L  VPL++L +    ++++  + +     +   P P WL ++P    +   +
Sbjct: 62  LLTFSWMVLVAVPLVWLGFNIADQIRDANALLHDLQVEGLPPAPEWLGELPLIGDSLVNF 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  I S         +++   ++R G   L+  LS    ++ +FFFYRDG  
Sbjct: 122 WNTVDEQGTALIASIRPYIGQVANWLLVRSARIGGGMLELALS----LVLVFFFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  + SL   L          +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LSAFVHSLLHRLIGDRADHYLELVAGTVQRVVNGVIGTAAAQAILAYIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T   + I    P+ +     +L  +G+   A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGLLTFACSFI-MVPPLIWGPAVAWLAWQGDYGMAVFLGIWGMFVISGVDNVLKPYLISR 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              LP +    G+ GG+   G +GLF+GP L+A+   +  + ++ 
Sbjct: 297 GGNLPLVVVLLGVFGGILAFGFMGLFLGPTLLAVAYSLLGDWLIK 341


>gi|296331537|ref|ZP_06874007.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675700|ref|YP_003867372.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151304|gb|EFG92183.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413944|gb|ADM39063.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 388

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 112/333 (33%), Gaps = 5/333 (1%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    +  LK    P++   I+ +   PI      ++      + ++  + +  + I  
Sbjct: 42  FIFTPIIVLLKTISLPIILTGIVFYLLNPIVDFLERRRIRRIYSILLLYLLIIGLITITI 101

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  +  +   ++  L+  +         V    +    G        + ++   S     
Sbjct: 102 VS-IIPFLKEQIMSLIDNIPRYV----DVVENQTKQLIGSNFVNQAQQTMNINISDLATK 156

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            +      ++        F     +  +SI+ +   LF+  +DG  +   +         
Sbjct: 157 VSDQAATIVNSTFTGVGNFIGALTEIIISIVTVPFILFYLLKDGKKLPVYILKFVPTRLK 216

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   +   + S   G  I++   G +L   Y + G+     L VI A  +++P  
Sbjct: 217 EQTYTVLSEMNHRLSSYIRGQIIVSFCIGFLLFIGYLIIGLDYASLLAVIAACTSIVPYL 276

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      +I + I  +      L +   I   I  K + P ++G  + +  +   F L+
Sbjct: 277 GPTIAITPAIIIAIVTSPLMLLKLVIVWTIVQLIEGKLISPQIMGKNLHIHPITIIFLLL 336

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  G++G+ +     A+  VI        K
Sbjct: 337 TAGKLFGVVGIILAIPGYAVAKVITTHLFDWFK 369


>gi|256838716|ref|ZP_05544226.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739635|gb|EEU52959.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 415

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 11/356 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIAT 67
           + +   +++  I+  +  L+    P L A ++ +   P    F  K   +S     +   
Sbjct: 46  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V++  L  + ++ +      E  + +  +   +     VP         + ++  + + +
Sbjct: 106 VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVPLIPHSWMEYLESNVNFAQIM 165

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L         +  I                 +  +++   F   D   I+  
Sbjct: 166 ELLSKENLLKAVKQIAPQLWSILSNTFSILFS----ITIVFVILLYFIFILLDYEKIANG 221

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  V LG+ 
Sbjct: 222 WIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLAVTLGLF 281

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ +IP    I    + +  L       +          L   I   I D  L P ++
Sbjct: 282 IGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLYLTPRIM 341

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G  + L        L      +G +GL I   L  L    +K  I+      +  S
Sbjct: 342 GKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEYNELDSRS 397


>gi|28901438|ref|NP_801093.1| hypothetical protein VPA1583 [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839443|ref|ZP_01992110.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|260362991|ref|ZP_05775860.1| hipothetical membrane protein [Vibrio parahaemolyticus K5030]
 gi|260880278|ref|ZP_05892633.1| hipothetical membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|260896661|ref|ZP_05905157.1| hipothetical membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|28809985|dbj|BAC62926.1| putative membrane protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|149747032|gb|EDM58020.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|308085424|gb|EFO35119.1| hipothetical membrane protein [Vibrio parahaemolyticus Peru-466]
 gi|308091913|gb|EFO41608.1| hipothetical membrane protein [Vibrio parahaemolyticus AN-5034]
 gi|308112310|gb|EFO49850.1| hipothetical membrane protein [Vibrio parahaemolyticus K5030]
          Length = 381

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 130/349 (37%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +I  +++ +   ++ F  PV+   II     P+               A  
Sbjct: 17  MVESAIRIGLIFVLLMFTYDIIRPFILPVIWGAIIAVALLPLTKKLQRAYGGRRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + PL+ +    +      +  +             ++D P           
Sbjct: 77  IVLLGIALLVTPLVMVSGSIVDGATHALDVLQNGQVKIPGPKASVADWPLVGDKLYEVWT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I +      + +  +           L   L  I  +     F     S++
Sbjct: 137 LFATNLEQAIQTFMPQIKSALTSLLGMVGGV----LGSLLLSILSLAIAAGFMTYSESLA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L 
Sbjct: 193 SGLQTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I  I+ +    A ++   V  Y+ +  +   AT   +W A+   + +  L+P  +G  +
Sbjct: 253 LILMILCIAQLPALLAVLPVIGYMYMTQDSTTATMFTVW-AVVGALSENLLKPMFMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +P      G +GG+   G++GLF+G V++A+   ++   +   K  ++
Sbjct: 312 DVPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQ 360


>gi|326693108|ref|ZP_08230113.1| permease [Leuconostoc argentinum KCTC 3773]
          Length = 367

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/322 (13%), Positives = 104/322 (32%), Gaps = 10/322 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   FAP++ A  + +   P+ S     K            VI  +  + + +  L+ L
Sbjct: 40  FISTVFAPLVVAGFLYYILKPLVSLIQKIKIRGKVIPHQLAVVITFLGFLAMIVGALVVL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E+  LV+ +         +   +               H S        +    
Sbjct: 100 VPTLIQEITNLVNALPSFLNDAQRIATEVVKSEWFDAL------HFSVEVEQVKTAVGKY 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +                  ++++ + + LF+   DG  +   +  L          
Sbjct: 154 AGSFLTVTAGTLGTVTSTVTTVTINLVTIPVILFYMLSDGNRLVPAIQKLFPARHAETIS 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +++  +   I     G  I     G  +   Y L G P    LG+I  I  ++P   P  
Sbjct: 214 ELTTKMDTTIEKYISGQAIEMGFVGASMAIGYLLIGQPYAWLLGIIAGITNIVPYLGPWI 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++ +    +      + +   I   +    + P ++G  + +  L     L+    
Sbjct: 274 GVVPALIIASTQSWKQVVLVLIVMTIVQQLDGNFIYPNVIGKSLAIYPLTIMILLMVAGN 333

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G++G+ +   + A++ V+ +
Sbjct: 334 LWGIVGMILIVPVYAILRVVVQ 355


>gi|300903504|ref|ZP_07121429.1| hypothetical protein HMPREF9536_01636 [Escherichia coli MS 84-1]
 gi|301302846|ref|ZP_07208974.1| hypothetical protein HMPREF9347_01424 [Escherichia coli MS 124-1]
 gi|331664050|ref|ZP_08364960.1| putative permease PerM [Escherichia coli TA143]
 gi|300404536|gb|EFJ88074.1| hypothetical protein HMPREF9536_01636 [Escherichia coli MS 84-1]
 gi|300841781|gb|EFK69541.1| hypothetical protein HMPREF9347_01424 [Escherichia coli MS 124-1]
 gi|315256510|gb|EFU36478.1| permease, PerM family [Escherichia coli MS 85-1]
 gi|331059849|gb|EGI31826.1| putative permease PerM [Escherichia coli TA143]
          Length = 353

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   I   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 353


>gi|296445779|ref|ZP_06887732.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296256759|gb|EFH03833.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 349

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/346 (22%), Positives = 155/346 (44%), Gaps = 6/346 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M N Q     ++  ++ + L+ +  F  P+  A I+ + ++P+Y   +       +  A 
Sbjct: 1   MQNRQIFALLLLGVVVGLGLFVVSPFLTPLAWAAILAYATYPVYRRILRASGNRPSLAAT 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELW 123
            AT+ ++ + +VP+ FL      ++ E   ++        I +P  ++  P    A +  
Sbjct: 61  FATLLLVVVLVVPVAFLLVRLQSDLAEAYRELSSQFADEPIVLPDAVARFPVVGPALDDM 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              + +    +           +  + R     G         I    IALFFFYRDG  
Sbjct: 121 LNTIWNDPERRREQVKEWIEPWMSGLARTLGMIGRS----LAQIALTAIALFFFYRDGAL 176

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++L +    +  A      R +    ++   G+ + A+ +GL+ G  Y + GV + + 
Sbjct: 177 VVEELRAGLRKVVGASADNYVRAIGATTQAVVSGVIVSALFQGLIAGVGYAVVGVGTPIL 236

Query: 244 LGVITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           LG +TA+ A++P       +  V +YLL+ G       L  WG + +  VD  ++P L+ 
Sbjct: 237 LGALTAVAALVPFIGTWAVWAPVGVYLLVVGQTGAGVALLAWGGLVVSWVDNIIKPLLIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               +P +   FG++GG+   G +GLF+GP+++A++  IW+E +  
Sbjct: 297 SAADIPLVIVLFGVLGGLLAFGFVGLFLGPLILAVLLSIWREWLAG 342


>gi|257466379|ref|ZP_05630690.1| permease [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917535|ref|ZP_07913775.1| permease [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691410|gb|EFS28245.1| permease [Fusobacterium gonidiaformans ATCC 25563]
          Length = 373

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 107/327 (32%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            FF P++ A+ +    +P+      K         ++  + +     + +L +       
Sbjct: 38  SFFIPLIWAMFLSILLYPLQKFLEEKLHLKRELALIVVLILLGLCVSLFMLTVIPQVSKS 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +KEL        +        +  +        +    +    S                
Sbjct: 98  IKELQQIYPYMEKRVGEFLDKILSLLHKQGLLLMNETEIMKAISEYTQDNIQKIQQIGIS 157

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I            ++ + +      L         I + +    +        +I R   
Sbjct: 158 IFWNVFDVTFGLANFFIGLFLACFILLKPEDFVKVIERVIYLNVKKEKALNIIEILRKSK 217

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +  +  +G  +++I   L++    +L   P  V   ++  +  MIP    +  + VS +
Sbjct: 218 DIFLNYVVGRLLVSIIVALIVFLILFLTKTPYPVLTALLFGVGNMIPYLGVLVASLVSGF 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++    +    L     +   +    + P +VG  + L        ++   + MG+ G+
Sbjct: 278 LILIFAPYKIGYLIFAIVLSQALDGFIIGPKIVGDKVGLNSFWVVVAILLCGKLMGIAGM 337

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
           F+G  +  +I +I++E   A  E +++
Sbjct: 338 FLGVPIFCIIKLIYQEKWRAYVEKEKE 364


>gi|282859354|ref|ZP_06268462.1| conserved domain protein [Prevotella bivia JCVIHMP010]
 gi|282587839|gb|EFB93036.1| conserved domain protein [Prevotella bivia JCVIHMP010]
          Length = 358

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/363 (14%), Positives = 122/363 (33%), Gaps = 16/363 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M + +   + +   +I  II    + LK       P   A ++ +   PI      K   
Sbjct: 1   MIQPITLDKFLRWTVIALIITAVFFVLKGLSSVLLPFFVAWLLAYLLHPIVKFIQFKMHV 60

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +I  +  + +    ++ +    + ++ +L        Q         S    G
Sbjct: 61  KSRAVSIIITFILAILIITGVVMVIVPPFIDQVAKLGDLANRYVQD-----NTHSSSIAG 115

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           M    +   H    + L            +  +  F  +   + +   ++    ++ +FF
Sbjct: 116 MIKKWINDNHAQIDKFLNSRDFADTIKTAMPKLFDFVGQTASVVMS-IIASFITLLYMFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   + + L  +       +W  ++  V + + S   G  ++A+  G++    + + 
Sbjct: 175 ILLDYDDLLKSLVKMIPKSQRPFWCGLASDVERALNSYIRGQGLVALTMGILFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI------KGNIFNATCLFLWGAIELF 290
             P  + LG++  I+ ++P    I+    ++  L+                 L   I   
Sbjct: 235 DFPMAIGLGILIGILDLVPYLHSIALIPTALLALMKAANTGSNFWMIFGAAVLVFIIVQI 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I+D  + P ++G  + L        L      +G +GL I   L  +I   WK  +   +
Sbjct: 295 IIDMVVTPKVMGKAMGLNPAVLLLSLSIWGALLGFIGLIIALPLTTIIIAYWKRYVTKEQ 354

Query: 351 ENK 353
           E +
Sbjct: 355 EEQ 357


>gi|77164902|ref|YP_343427.1| hypothetical protein Noc_1408 [Nitrosococcus oceani ATCC 19707]
 gi|254434366|ref|ZP_05047874.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883216|gb|ABA57897.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207090699|gb|EDZ67970.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 372

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/357 (14%), Positives = 114/357 (31%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ     +++ +   ++ F+    APVL++L+I +    I      +       
Sbjct: 9   QRYFADPQVTGLAILLAVGFATVVFMGHVLAPVLASLVIAYLLEGIVGYLERR-GCPRWI 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  V  M      +  L      ++ +    +      G  +   L +    +++ +
Sbjct: 68  AVILVFVVFMVALFGDIFGLIPLLSQQVTQFFQLLPKMIAQGQQLLLSLPEYYPNLFSQD 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +S            + +  +  +               + ++ + + +FFF +D 
Sbjct: 128 QVNNLVSALHVEVAQLGQEMLSWSLASVTSLIM--------LGMYLVLVPLLVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +     S           ++ R V   I +   G  I  +    V    ++L G+   
Sbjct: 180 NRLVGWCKSYLPQE-RKLIVQVWREVDFQIANYIRGKCIEILIVWAVSFITFYLLGLQFS 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    ++ T +  ++       +A     F    I  F+    L P 
Sbjct: 239 MLLSVLMGLSVIIPYIGAMAITLLVAFVAYFQWGLSAELAEAFGVCVIIQFLDGNVLAPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     +V      G  GLF    L  LI  + K         +   
Sbjct: 299 LFAEVVDLHPVAVIVAIVVFGGVWGFWGLFFAIPLATLIQAVLKAWPKLPPAKEPLP 355


>gi|88811404|ref|ZP_01126659.1| hypothetical protein NB231_11734 [Nitrococcus mobilis Nb-231]
 gi|88791293|gb|EAR22405.1| hypothetical protein NB231_11734 [Nitrococcus mobilis Nb-231]
          Length = 378

 Score =  122 bits (305), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/355 (13%), Positives = 124/355 (34%), Gaps = 8/355 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++  + + +     + + +  V +Y L+    P L+  ++ + + P+      +   + T
Sbjct: 12  LKPRLPDRRAWPLLLALALGGVLIYLLRPILMPFLTGALLAYLADPLADRLE-RLRLNRT 70

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F  ++    +  + +  LL L      ++  L S +         V         G+   
Sbjct: 71  FAVIVVFTGLSLVGVGALLLLLPMLGSQLDSLRSLLPQVVDWVHQVGLPWLRTHAGVGIE 130

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L    +          ++    +   A+  G+       ++  + +  F+  RD
Sbjct: 131 SLDLATLRGAIAE----HWQSTSSFAASVVAQATSSGLALAGLLANLALIPVVTFYLLRD 186

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++  L           ++    +V+ +   G  ++ +  G++     WL G+  
Sbjct: 187 WDVLIARIRDLLPRRMEPIISTLAGECNEVVAAFLRGQLLVMLALGVIYAFGLWLLGLDL 246

Query: 241 HVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLR 297
            + +G++  I +++P    I     A    +    +      L      +   +    L 
Sbjct: 247 ALLVGMLAGIASIVPYLGFIVGIGSAALATVFQFSDWLMPLGLVCGVFLVGQLLESLLLT 306

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P LVG  I L  +   F ++ G +  G  G+ +   + A+I V+ + +      +
Sbjct: 307 PLLVGDRIGLHPVAVIFAVLAGGQLFGFSGILLALPIAAIIMVLLRHAHDRYLRS 361


>gi|325479810|gb|EGC82897.1| putative membrane protein [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 408

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/372 (10%), Positives = 113/372 (30%), Gaps = 23/372 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKK 55
            N   +   +I  ++  + ++ K              PV+  L+I F      + F +K 
Sbjct: 11  KNKNILKVTIISILVFFAFWYKKDVSEGFVRTYAVIRPVIYGLVIAFIINLPMNFFENKV 70

Query: 56  EES-----------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                         S    +++ +    +  + +       +  +  LV  + +     I
Sbjct: 71  FGRFIDRSKHKHLASALSLILSWIVFFGIITIIMTVFIPELVNAISSLVENIPIFMDKLI 130

Query: 105 PVPRW--LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                  L         + L    + +                 +      S      + 
Sbjct: 131 EYLNNQRLFKEVSAEIIARLNKLDVENLTKEITAFLNGKNIGIWNKTSNILSSVSSWLIA 190

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             +  +F +           + ++ L +  +     +   ++++             +  
Sbjct: 191 VIMGFVFSLYVSANKKELQTNANKILLANFKEDKVNHINYVAKLSYDSFSKFLETKLLSC 250

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  GL+      +  +P    + ++     +IP   PI  T V + L+   +   +    
Sbjct: 251 LSLGLICFIGMKILKLPMAGMISILVGAFDIIPYFGPIIATGVGMILIFIQSPAQSLIFL 310

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++      + +K + P ++G    LP +  F  +  G    G+ G+ +   +  ++  + 
Sbjct: 311 IFVLSIQQVQEKIIYPLVIGKHQGLPAIWIFLSVFLGAGLFGIAGMIMSMPVATILYTLI 370

Query: 343 KESIMAIKENKE 354
           +++     + KE
Sbjct: 371 QDNTKRKLKIKE 382


>gi|311900616|dbj|BAJ33024.1| hypothetical protein KSE_72690 [Kitasatospora setae KM-6054]
          Length = 371

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 95/325 (29%), Gaps = 19/325 (5%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+     +P+   F+ +        A +    ++ +    +  L    +    +
Sbjct: 54  IPMVIALLATALLYPVMPWFVRR-GVKRGVAAGLTCAILVLVVTGGIALLVNSLVNSAPQ 112

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           + S +  A                       W           +   +   +  +D +  
Sbjct: 113 IASGLQQAGDRIAS-----------------WLGPFGDKVQYALKESSGSGSTLVDSLAN 155

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  +        +  +  +FFF RDG      +  L             +     +
Sbjct: 156 GVLSGLGLVTQLLTGGVLALALVFFFLRDGHRFGDAMHELMPGRHADTVIACGQQAFTAM 215

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLL 270
                G T+IA+ +   +     + GVP    LG +  + A IP     +S T   +  L
Sbjct: 216 AGFMRGTTLIALIDATFISIGLLVLGVPGAAGLGALVFMGAYIPFVGAFLSGTVAVLVAL 275

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             G +  A            I    L+P +    ++L        +V G    G++G  +
Sbjct: 276 ANGGLGTALWALGVVLAVQAIEGNILQPLIQSRTVELHPATIMIAVVAGSGIAGIIGALL 335

Query: 331 GPVLMALIAVIWKESIMAIKENKEK 355
              + A    +       ++ +   
Sbjct: 336 AVPVSAAGLGVVSVLRGGVERSGAP 360


>gi|25029191|ref|NP_739245.1| putative integral membrane protein [Corynebacterium efficiens
           YS-314]
 gi|259505812|ref|ZP_05748714.1| integral membrane protein [Corynebacterium efficiens YS-314]
 gi|23494479|dbj|BAC19445.1| putative integral membrane protein [Corynebacterium efficiens
           YS-314]
 gi|259166600|gb|EEW51154.1| integral membrane protein [Corynebacterium efficiens YS-314]
          Length = 461

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 98/323 (30%), Gaps = 18/323 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFF----APVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             +R+++  I    L+           P+L AL+     WP+        +      A+ 
Sbjct: 72  WALRFIVFVIAGWILWQGLAVIWAGLLPILLALLACTVLWPVTKFLRDH-KWPPALAAIA 130

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +    +       +    + + +++  +     Q  +   +            E    
Sbjct: 131 TILGFFLIIGGIFSAIAPSVISQSQQVYERAYGGIQSLLDQLQNGPLNLDLGRVDEFVND 190

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q                 I               ++I+ M +  FFF +DG +  
Sbjct: 191 ATQWIQDQ------------ASNIASGVFTGVSAATTVVVTIVVMFVLTFFFLKDGVNFL 238

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L          +  ++       +        ++++ + +++G    +  VP  +AL 
Sbjct: 239 PWLRKYTGDNAGWHLTEVLTRSWNTLAGFVRTQALVSLVDAVLIGIGLVILQVPLALALA 298

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VIT     IP     +      I  L+   + NA  +     +   I    L+PFL G  
Sbjct: 299 VITFFGGFIPIIGAFTAGALAVIIALVTNGLTNALLVLALIVLVQQIEGNVLQPFLQGKA 358

Query: 305 IKLPFLPTFFGLVGGVRTMGLLG 327
           ++L        +  G    G+LG
Sbjct: 359 MQLHAAIVLLSVTVGSTLFGILG 381


>gi|229032241|ref|ZP_04188214.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1271]
 gi|228729021|gb|EEL80024.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1271]
          Length = 365

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 118/348 (33%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +      +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|168699365|ref|ZP_02731642.1| hypothetical protein GobsU_07587 [Gemmata obscuriglobus UQM 2246]
          Length = 384

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 113/327 (34%), Gaps = 12/327 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I +S      F   +   + +   +WP+ S    +   + T  AV+A+  V+ L  VP  
Sbjct: 48  IGLSAALAVPFLPALTWGVALAIIAWPLSSWL-RRVTANRTCAAVVASAVVILLVAVPSG 106

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           ++      E+     +              +         +    +          ++  
Sbjct: 107 YVAQQVAREVSSSTEQAQQ---------EAVQGTLRERMLATPVLRDAVAWAERPEVNLE 157

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                                + + L +   I  L++  RDG    +    L   + P  
Sbjct: 158 AEAKKAAREYLGNGMWLARGSVAFLLQLAIAIYILYYSLRDGDQFLRAARRLLP-VTPEE 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++       + +      + +   G+     +W  G+P+ +  GV+  +++M+P    
Sbjct: 217 ADRVFDRAGGSVHANLYASLVTSAINGVNAALLFWATGLPAPILWGVVVFVVSMLPVAGI 276

Query: 260 -ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   + YL +  +   A  L  WG     +VD  L  +L GG ++L  +P     +G
Sbjct: 277 FLIWVPAAAYLALTDHWGGAVALVAWGVGSSVLVDTLLYTWLAGGRMRLHPVPALLSFIG 336

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKES 345
           G+   G  G+ +GP ++A+   +    
Sbjct: 337 GLALFGASGIVLGPAILAVTVAVLDVW 363


>gi|315657444|ref|ZP_07910326.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491916|gb|EFU81525.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 487

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + +IL  +  +   F P+  AL++     P++           T  A+I+ +
Sbjct: 68  RFLAIVAALGLILYGITKVSIVFIPLAIALLLTLLLEPMHLRLQKW-HIPKTLSAIISLL 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +             L+ K        +                +L  + + 
Sbjct: 127 VGVGLVVAMIWIATSQLAHGAPALLVKAGGGFDKALAWL--------SDGPLKLDQEQIE 178

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T   T     I   A            +I+  +  LFFF +DG  I   L
Sbjct: 179 KYIHELTAQITAFATKYSSSIASSALSVTSSVASVVTTILISLFCLFFFLKDGRQIWIWL 238

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG-VI 247
             +          + +      +        ++A+ + + +     + G  S      ++
Sbjct: 239 IRMLPVPAREPVHEAAIRGWTTLNGYIRAQAVVALVDSVFISIGAAVLGAGSMTIPLALL 298

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I A IP    ++      + LL+      A  + +       I    L P L+   + 
Sbjct: 299 IFIGAFIPIVGAVTTGAIAVLILLLDKGFMAAVIMLIVILAVQQIESNVLHPMLMSSAVN 358

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L    G+  G    G++G  +   ++A    + 
Sbjct: 359 LHPLAVLLGVTAGTFLAGIIGALLVVPVIAFFNTVV 394


>gi|229105224|ref|ZP_04235873.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-28]
 gi|228678150|gb|EEL32378.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-28]
          Length = 367

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 117/348 (33%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +      +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLVALFIGFKLFGFLGLIIGPVTLVLLNTLHKAHV 351


>gi|320008818|gb|ADW03668.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 466

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 97/309 (31%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    ++I++  +  ++      ++AL++     P       +          +  V
Sbjct: 86  RLLVLAGTLWILMRVISAIQLVVLAFVAALLVTALLQPTVVRL-RRLGLPRGLATAVTAV 144

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  +  L  +V                     W  +       
Sbjct: 145 LGFVIMGLVGWFVVWQVMDNLDTLSDRVRDGIDELKR------------WLLDSPFHVTE 192

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    + +       + I     +   + ++    ++  + +  F   DG  I Q +
Sbjct: 193 SQINDIAKNLSDTIGTNTEEITSAGLQGVTVMVEVLTGLLLAMFSTLFLLYDGKRIWQWV 252

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 253 LKLVPAQARPGVAGAGPRAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVFI 312

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +F A  + +       I    L+PF++G  +++
Sbjct: 313 FLFAFIPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRV 372

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 373 HPLAVVLSV 381


>gi|300703166|ref|YP_003744768.1| permease [Ralstonia solanacearum CFBP2957]
 gi|299070829|emb|CBJ42126.1| putative permease transmembrane transport protein (perM) [Ralstonia
           solanacearum CFBP2957]
          Length = 356

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 107/340 (31%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +  I L  L  L     P + A I+ +   P        +         + 
Sbjct: 10  TKRTLAWIAVAVIFLALLKLLAPTLTPFVFAFILSYILHPGVEWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  L +  +L +      E+  +  ++                 P            
Sbjct: 69  ILLLAVLAVALMLLILAVLQREIPAIREQLPGMLSKLNAAI-----TPRLAEMGLHVRFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + L          + +     +    G   +     +  + I +F+   D   + +
Sbjct: 124 FPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQLLGIVFLVPIVMFYLLMDWNMLMR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +L+      +    ++++     ++     G  I+ +   +   S   LAG    + +G+
Sbjct: 184 RLEGTVPRRWIGKARELAAETDGLLSQYLRGQIIVMLVLAVYYSSGLALAGFDVALPIGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I   LL  GN++    + +   I   +    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGIGLTLAILSALLQFGNLYGLLAVAVVYGIGQVLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQ 343


>gi|269795407|ref|YP_003314862.1| putative permease [Sanguibacter keddieii DSM 10542]
 gi|269097592|gb|ACZ22028.1| predicted permease [Sanguibacter keddieii DSM 10542]
          Length = 436

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 104/335 (31%), Gaps = 13/335 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+  + + +++ +   ++  F  +  AL+      P+ + +             +A +
Sbjct: 33  RLIIVTIAIGLVVFATSRVQLVFIALFVALVFSAVLRPVVNIYAK--VMPRALATALALL 90

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +    L ++      + ++L  +                          L      
Sbjct: 91  SGILVIGGLLAYVVASVAGQWQKLSDQFESGTNQIFEFLEN----------GPLPFSITV 140

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                          +    I   A        +   ++        FF   G S+    
Sbjct: 141 DDMRGWFDDGLQWVQDHAGDIAGTAFEQAGTVFEIFTALALAFFCTIFFLARGDSMWSWF 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +         WK +             G  IIA+ +G++ G    + GVP    L V+ 
Sbjct: 201 LNQLPSRLRDTWKVVGGAGWYTFSGYTRGTVIIAVTDGILAGIFLTILGVPLAAPLAVLV 260

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A IP    P +     +  L    I+ A  + +  A+        L+P ++G  + L
Sbjct: 261 LIGAFIPLIGAPAAMVIAMVVALAADGIWKAALVGVGIALIGQFEGHVLQPLVMGRQVSL 320

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +     +  G    G+LG  I   L+A+   ++
Sbjct: 321 HPVVVAISVTAGTLLSGILGAVIAVPLVAVAWAVY 355


>gi|28199441|ref|NP_779755.1| permease [Xylella fastidiosa Temecula1]
 gi|182682169|ref|YP_001830329.1| hypothetical protein XfasM23_1648 [Xylella fastidiosa M23]
 gi|28057556|gb|AAO29404.1| permease [Xylella fastidiosa Temecula1]
 gi|182632279|gb|ACB93055.1| protein of unknown function UPF0118 [Xylella fastidiosa M23]
 gi|307578438|gb|ADN62407.1| hypothetical protein XFLM_02030 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 385

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 130/349 (37%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +  ++++  +L   + L     P + ++ +G+ + P+          S          
Sbjct: 14  RRLKWYVLVGGVLWMAWLLTPVLIPFVLSVFLGWLADPLVKRVE-WVGVSRAMAVCFVFF 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++ L+        ++  L++     +     V   +         S+L T    
Sbjct: 73  LVVLLLVLVLMIFVPLIERQVVTLINTFPQMHDW---VVNTVIPWVEQKTGSQLRTWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S           +  + SR G + + + +++  + I  F+F RD     +++
Sbjct: 130 EQMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILSFYFLRDWDKWVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +     +++    +V+ +   G  ++ +  G +      L G+   + +G+I 
Sbjct: 190 AAAIPRAYIGTVSRLATEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLRLGLLIGLIA 249

Query: 249 AIMAMIPGGAPISFT----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP    I+         I  +   ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G +G+ +   + A++ V+ + +     E++
Sbjct: 310 IGLHPVAVIFSVMAGGQLFGFVGMLLALPVAAVVNVLLRYAHERYIESE 358


>gi|256847905|ref|ZP_05553350.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
 gi|256715594|gb|EEU30570.1| conserved hypothetical protein [Lactobacillus coleohominis
           101-4-CHN]
          Length = 366

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 109/337 (32%), Gaps = 10/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           F+    L F+   F P++ +L + +   P+ S+ +     +        + +  + ++ +
Sbjct: 29  FVFRPILIFISVVFVPLIISLFLYYMLRPVMSALMKVRLGRHRIPRGVASFVIVLLLILI 88

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  +    + E+ E++  +    +        LS  P             +     
Sbjct: 89  VVSVIAAIIPPMINELTEIIKSLPATAKETQKWVVRLSHHPWLKNID------FNGYYKE 142

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                +      ++ +   A     +     +  I + + LF+  +D       +     
Sbjct: 143 MTNQLSKSSETILNGVTSKAGSLIGMLTSTVIVAITVPVMLFYMLKDSNKFVPSIQKYFS 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K+   +   + S   G  I  I   +     Y + G P  + LG++  +  M
Sbjct: 203 EKHGEEISKLLHQMNTTLSSYISGQAIECIFVAVATSIGYLIIGQPVAIVLGLVAGLTNM 262

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      ++ + +         + +   I   I    + P ++G  +K+  L   
Sbjct: 263 IPYVGPYIGITPALMVSLAMAPKKIIWVIIVVVIVQQIDGNIIYPNIIGRTLKIHPLTII 322

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+      G+ G+ +     A+I  I+       +
Sbjct: 323 MLLLAAGNIAGIPGMILCIPFYAVIKTIFNYIWSIYR 359


>gi|34541553|ref|NP_906032.1| hypothetical protein PG1950 [Porphyromonas gingivalis W83]
 gi|34397870|gb|AAQ66931.1| membrane protein, putative [Porphyromonas gingivalis W83]
          Length = 386

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 114/349 (32%), Gaps = 9/349 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     +++  I+  +  L+G   P   + I+ +   P+      +      FL+VI
Sbjct: 13  RTARLFFIILLVGGIMAIVIGLRGILIPFCLSWILAYVLMPLVRFVQYRLHFRFRFLSVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  +   I    F     +  ++E VSK +   Q        L  +P  +      + 
Sbjct: 73  TVLVFISALI---FFAILSLVPAVEEEVSKTITLLQQYRIDENLLQMLPAPIRKFLSESG 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++         +    +  I           +    Y       ++   F   D   + 
Sbjct: 130 SMNDLFKGISYEKLMENSKEIFGQLNKLVSGTISLFSYTTIFFIGVLYFIFILFDFEKLG 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   +L         + I + V K + S F G  +IA+  G++L   Y +   P  V LG
Sbjct: 190 KGFVNLFPVGHRIRVRSILKEVDKNMNSYFRGQALIALCVGILLSIGYKIIDFPLGVTLG 249

Query: 246 VITAIMAMIPGGAPISFTAVSIY----LLIKGNIFNATCLFLWGA--IELFIVDKTLRPF 299
           +   ++ +IP    +    +           G  F        G   I   I D  L P 
Sbjct: 250 LFIGMLNLIPYLQIVGLIPIVFLSVLKAAQTGQNFFVVLALGIGVMMIVQVIQDTILTPN 309

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           ++G  + +        +      +G  GLFI   L   +  ++K  ++ 
Sbjct: 310 IMGKRMGMSPAMILLSISIWGSLLGFFGLFIALPLTMSLYSVYKRYVIQ 358


>gi|296447817|ref|ZP_06889730.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296254676|gb|EFH01790.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 396

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/350 (17%), Positives = 134/350 (38%), Gaps = 5/350 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +ML    +    +  +   S   ++ F A V  + I+    +P++    +         A
Sbjct: 16  SMLIELIVRLGALAALAYWSFQLVQPFLAIVTWSAILTVALYPVFEWLATALGGRRKLAA 75

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T+  + + I P  +L    +  ++ L +++        P P  L  +P    ++  +
Sbjct: 76  TLITLVGLLVVIGPATWLGLGVVDGLRSLAARIDNGGLWVPPPPESLRSLPFVGQSAFDF 135

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  S      +           +F        G     + LS+I       F +  G +
Sbjct: 136 WELASTNLRSAVAQIAPSLKPLGEFALDATKNAGTGAFKFLLSVIIAG----FMFAPGPA 191

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + + +    +     +    +    IR+   G+  +++ +  V G    LAG P    
Sbjct: 192 LVRAIKTAAIRIDSKRAEHFVGLAGSTIRTVSRGVIGVSLLQAAVAGLGLQLAGAPGASL 251

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L +   ++A+I    P+     SI             LF    + + +VD  L+P ++  
Sbjct: 252 LTLCILVLAIIQI-GPMLIVVPSIIWSWTELPGIPAFLFTACMLTVTLVDNVLKPLVIAR 310

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +  P L    G++GGV   G++GLF+GPV++A+   +    + + + ++
Sbjct: 311 GLTTPLLVIVVGVIGGVLAHGIIGLFVGPVVLAVAWELLGAWLGSAEPSE 360


>gi|159901056|ref|YP_001547303.1| hypothetical protein Haur_4544 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159894095|gb|ABX07175.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 381

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 115/351 (32%), Gaps = 8/351 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++F  +     L         A+++      +   F   +        ++   
Sbjct: 12  RTVGWTLLIFSGVWITILLNHVLVLFFVAVLLAVAISGVVQRFEQLRIARP-ITILVIYT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +FI     L      +++ L  +     +                 A +  T  + 
Sbjct: 71  IIIAMFISLGFVLVPMVSQQVRLLAEQFPNLVRQPTQQAS-------AWLAQQFPTLRVP 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P               +      A  FG   +   ++ I +++  FF        S  +
Sbjct: 124 LPTGDLAGQAAHYAGTVVGGFSGAAFTFGRTLMGVIINFIVVLVLAFFLVSRANVASNFI 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +  + F      ++ ++ + +         +A    +  G   W+ GVP  VALGVI 
Sbjct: 184 KLMIPNRFQERLINVTNVIGRRLGRWVWAQLTVATFYAVCFGMGLWMLGVPYPVALGVIG 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP       T +++ +        A  + +   I   I    + P ++G  ++  
Sbjct: 244 GMLELIPYVGGFVATILTMLVAFTVQPMLAVWVLVLHLIVGNIEVHIIAPKVMGHAVETH 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            + T   L  G+  +G++G  I   L  +   + +E  +      +  + +
Sbjct: 304 PVITILALFSGIELLGIIGGVIAIPLAVVGQALVEEFWIKRIREAQPAAES 354


>gi|331700348|ref|YP_004336587.1| hypothetical protein Psed_6646 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326955037|gb|AEA28734.1| protein of unknown function UPF0118 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 493

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 14/346 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      +++  +  L+    PV  A+++     P+    ++++         +  +
Sbjct: 119 RVLIIAAAFGLLVFVIIELRVVVVPVAIAVLLSALLAPVVHWLVARRV-PRGPATFLVLI 177

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L    L F+    +     L +++  + Q    +               L  +   
Sbjct: 178 GGIALLGGLLSFVINTFIAGFPALQAQLTASFQSVQQLLAGPPLRIPTSQLDNLPAQIEQ 237

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +  +            D +   A        +    +   + +L FF  DG  I + L
Sbjct: 238 AIRDNR------------DVLTSGALTTAATVTEIAAGLALTLFSLIFFLYDGPRIWRFL 285

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R     +        ++AI + + +G   W  GVP  V L  + 
Sbjct: 286 LRAAPRARRERVDVAGRRAFASLVGYTRATVLVAIVDAVGIGIGLWAVGVPLVVPLAALV 345

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    + +     +  L+   +  A  +         +    L+P L+G  + L
Sbjct: 346 FLGAFIPTVGAVVTGAVAVLIALVANGLIPALIILGVVVAVQQLEGHVLQPLLLGRAVSL 405

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L     +  GV   G+ G  +   L+A+I    +      + + 
Sbjct: 406 HPLAVVLSVAAGVVISGIAGALLAVPLLAVITAAVRSLTAPTEPSP 451


>gi|170768895|ref|ZP_02903348.1| inner membrane protein YdiK [Escherichia albertii TW07627]
 gi|170122443|gb|EDS91374.1| inner membrane protein YdiK [Escherichia albertii TW07627]
          Length = 370

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 136/355 (38%), Gaps = 6/355 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    +AGVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVAGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNIIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQ 354


>gi|326942380|gb|AEA18276.1| hypothetical protein CT43_CH4616 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 372

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 311 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 358


>gi|188995746|ref|YP_001929998.1| probable permease [Porphyromonas gingivalis ATCC 33277]
 gi|188595426|dbj|BAG34401.1| probable permease [Porphyromonas gingivalis ATCC 33277]
          Length = 386

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 114/349 (32%), Gaps = 9/349 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     +++  I+  +  L+G   P   + I+ +   P+      +      FL+VI
Sbjct: 13  RTARLFFIILLVGGIMAIVIGLRGILIPFCLSWILAYVLMPLVRFVQYRLHFRFRFLSVI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  +   I    F     +  ++E VSK +   Q        L  +P  +      + 
Sbjct: 73  TVLVFISALI---FFAILSLVPAVEEEVSKTITLLQQYRIDENLLQMLPAPIRKFLSESG 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++         +    +  I           +    Y       ++   F   D   + 
Sbjct: 130 SMNDLFKGISYEKLMENSKEIFGQLNKLVSGTISLFSYTTIFFIGVLYFIFILFDFEKLG 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   +L         + I + V K + S F G  +IA+  G++L   Y +   P  V LG
Sbjct: 190 KGFVNLFPVGHRIRVRSILKEVDKNMNSYFRGQALIALCVGILLSIGYKIIDFPLGVTLG 249

Query: 246 VITAIMAMIPGGAPISFTAVSIY----LLIKGNIFNATCLFLWGA--IELFIVDKTLRPF 299
           +   ++ +IP    +    +           G  F        G   I   I D  L P 
Sbjct: 250 LFIGMLNLIPYLQIVGLIPIVFLSVLKAAQTGQNFFVVLALGIGVMMIVQVIQDTILTPN 309

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           ++G  + +        +      +G  GLFI   L   +  ++K  ++ 
Sbjct: 310 IMGKRMGMSPAMILLSISIWGSLLGFFGLFIALPLTMSLYSVYKRYVIQ 358


>gi|153933656|ref|YP_001383510.1| putative transporter [Clostridium botulinum A str. ATCC 19397]
 gi|153936965|ref|YP_001387059.1| putative transporter [Clostridium botulinum A str. Hall]
 gi|152929700|gb|ABS35200.1| putative transporter [Clostridium botulinum A str. ATCC 19397]
 gi|152932879|gb|ABS38378.1| putative transporter [Clostridium botulinum A str. Hall]
          Length = 366

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 97/306 (31%), Gaps = 1/306 (0%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P+   F  + +       +I  V  + +  + L  +       + ++   +      G
Sbjct: 60  LNPLVKLFERRFKIKRNLSILICYVITLGIVALVLSMIVPKVFQSIMDIFQNIPYFTNKG 119

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
             +   L                  + + L      F  + G++ I      F    ++ 
Sbjct: 120 YEMVNNLLANEEISNIINSSNVFKGNYKDLIDKIAGF-TSVGLNTILNQTISFTTFMVNL 178

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              +I  I  L    +  F+  + +  +    +     +  R V  +I+       + ++
Sbjct: 179 VFGLIIAIYVLNDREKFAFNGKRVVFLIFREKYGEKIIEFFRTVNSMIKLYIGIKALDSL 238

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GL+      +   P  + + +I  +  MIP   P      ++ + +      A  + +
Sbjct: 239 IIGLLALIGLIILKSPYALLIALIVCVTNMIPYFGPFIGMIPAVVINLFYVPVKALWVLI 298

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  +        L P LVG  + L       G+  G    G+ G+ +    MA+I +  K
Sbjct: 299 FLFLLQQFDAWYLEPKLVGDKVGLSPFLIILGITIGGSLFGVWGMLLASPAMAVIKIYTK 358

Query: 344 ESIMAI 349
           +     
Sbjct: 359 KLAEKY 364


>gi|325168727|ref|YP_004280517.1| integral membrane transporter [Agrobacterium sp. H13-3]
 gi|325064450|gb|ADY68139.1| integral membrane transport protein [Agrobacterium sp. H13-3]
          Length = 667

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 112/349 (32%), Gaps = 23/349 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +I+  + V L+  +  F P+  AL++ FT  PI S             AVI  V+   
Sbjct: 51  TILILIGVAVILHVGQEIFVPLALALLLTFTLAPIVSFLRKHSVPK--IAAVILAVASAF 108

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I    F+      ++  L   +    ++ +   + LS    G    E  +K +    +
Sbjct: 109 MAIALFSFVV---ATQVTNLAENIPTYQRNIVTKVQALSQAGSGNGVLEHLSKVVERVGA 165

Query: 133 LKILSETFLKTNGIDFI----------------PRFASRFGMIFLDYCLSIIFMIIALFF 176
                    +                             F +  +    +   +I+ + F
Sbjct: 166 ELQTRAVESQDEQSTAPTMREPMPVEIVTRSHPVETLGNFILPLISPFATAGLVIVLVIF 225

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              +   +  +   L             +   K +    L   ++       +    W+ 
Sbjct: 226 MLIEREDLRDRFIRLVGLGDLHRTTAALQDAGKRVGKYLLMQLVVNALYAFPITIGLWVL 285

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC--LFLWGAIELFIVDK 294
           G+P+ +  G++T ++  +P   P+    + ++L +  +   +    +     I   I + 
Sbjct: 286 GIPNAILWGLLTLVLRFVPYIGPVIGMVLPLFLALAISPGWSLVAGVAALFIITELISNN 345

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            + P+L G    L  +      +      G LGL +   L   + V+ +
Sbjct: 346 VVEPWLYGSHTGLSPMAIIISAIFWSWLWGPLGLMLSTPLTVCLVVLGR 394


>gi|188533959|ref|YP_001907756.1| putative inner membrane protein [Erwinia tasmaniensis Et1/99]
 gi|188029001|emb|CAO96869.1| Conserved hypothetical protein (UPF0118) [Erwinia tasmaniensis
           Et1/99]
          Length = 374

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 130/351 (37%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L         I   I+   + ++ F      A ++   +WP+   F        +   + 
Sbjct: 10  LAQIVFSLLFISLTIVACFWIVQPFILGFAWASMVVIATWPLMIKFQRLLWGKRSLAVIT 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ ++ +FI+P+  L    +     L++ +   +     +    S    G      +  
Sbjct: 70  MTLLLILVFIIPVALLVNSLIENSGPLIAWLGSGHLQMPELQWMRSIPLVGRKLYSAYHN 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   +  +            F    A  FG     + + +  M++     Y  G  + 
Sbjct: 130 LVAGGGTALLAQVQPYIGRTTGFFFAQAGHFGR----FMMHLGLMLLFSVLLYWRGEQVG 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q +      L          +  + IR+  LG+ + A+ + ++ G    ++G+P    L 
Sbjct: 186 QGIRHFAFRLASRRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGIPFATILT 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  ++  G  +      I+L   G+    T L +W  +   + D  LRP L+    
Sbjct: 246 VLMILSCLVQLGPLVVLVPAIIWLYWSGDTTWGTVLLVWSCVVGTL-DNVLRPVLIRMGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            LP +    G++GG+   G++GLFIGPV++A+   +    +       E  
Sbjct: 305 DLPMILILSGVIGGLIAFGMIGLFIGPVVLAISYRLVSVWVHEAPAPHEDP 355


>gi|118443099|ref|YP_878142.1| hypothetical protein NT01CX_2069 [Clostridium novyi NT]
 gi|118133555|gb|ABK60599.1| hypothetical protein NT01CX_2069 [Clostridium novyi NT]
          Length = 367

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 103/337 (30%), Gaps = 5/337 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            IL  L  +     P + A  I +   PI      + + +     V   + VM L  V  
Sbjct: 31  FILKILGDIINILTPFILAFTIAYVLNPIMKFIEKRLKFNRGTSIVCTYILVMSLITVFS 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +         +++  +    Q                  S L        + L     
Sbjct: 91  ITIIPKVFNSGIDMIDNIPEFAQKMYSWTSSHIPSKLIGSGSILRNNSGKWIEKL----- 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + + +  I  +           +++   +I  I  L+   +     ++ +  L +     
Sbjct: 146 SIMSSEWISLLLSTIVSTTTSLINFLFGLIISIYMLYDKEKFQDIATKLVYILLKENKGN 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +    + V  ++ +      I +   G++      +   P  + L +I  I  MIP   
Sbjct: 206 KFISFIKTVHTMVGTYIGIKAIDSFIIGIICFIGLMIFKTPYVLILSIIVMITNMIPYFG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       + + I  +   A  + ++  +        L P LV   + +       G+  
Sbjct: 266 PFMGMIPPVVINIFYDPKRAIGILVFLILLQQFDAWILEPKLVSTSVGVSPFLVILGITI 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                G++G+ +   +MA++ +   +         E 
Sbjct: 326 FGSVFGVIGMLLASPIMAVLNIYLGKWFRKKVNQYEN 362


>gi|325917145|ref|ZP_08179375.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325536625|gb|EGD08391.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 346

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 96/339 (28%), Gaps = 19/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + +      L+ L      V  A+++      + S    +   S  +   +  + 
Sbjct: 12  RVIVVLALVACAWMLWTLSDLLLMVFGAIVVAVLLRAVSSWLTRRTRLSDGWALALVVIV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +   F   L         E+  L   +  A              P     +         
Sbjct: 72  LTAGFSALLWLFGSQLASEVGALQRTLPQAWTRVHDWLAAGPLGPAVEELTRQ------- 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                           +  +   A  F +       ++  +++   +         +   
Sbjct: 125 ------------APARVSNLAPRAGAFALSITGGVANLFLVLVGAVYLAAQPHLYRRGAL 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A      +     +R    G  I  +  G + G   W  G+P  +ALG++  
Sbjct: 173 LLLPAHVRATTDDALQASGTALRLWLRGQLIAMVVVGALTGLGLWALGIPGALALGIVAG 232

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  +P   PI     +I L    +   A        +   I    L P +    + LP 
Sbjct: 233 LLDFVPIVGPILAAIPAILLGFTVSPQMALATAALFVVVQQIEGNLLLPLIQQRTVDLPP 292

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +   F L G    +G  G+ +   L  +  V+ K   + 
Sbjct: 293 VLLLFSLFGIGMLLGPPGVLLAAPLTVVGYVLIKRLYVQ 331


>gi|86608635|ref|YP_477397.1| hypothetical protein CYB_1159 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557177|gb|ABD02134.1| putative membrane protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 382

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/362 (11%), Positives = 128/362 (35%), Gaps = 16/362 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M       + ++ W+++ I                  +L+A ++ F           +  
Sbjct: 1   MNRFSPLQRLLLTWILIVISGWLAIQVGRLFGHLLTTILTAAVLAFLLNYPVQVL-RRYR 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S      +     + L ++  + +      ++ +L +++             +S     
Sbjct: 60  VSRGLAVTLVFALSVVLLVLVGIAVVPVLAKQVVQLGARIPEWVDTLQNWLDQISLWAA- 118

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                   ++++  Q+  + +         + I   +    +   +  + ++ +++   +
Sbjct: 119 -------ERNINLGQTELVNTLLNRLQASAEKIAGQSLDLLLGTFNQVIDLVLVLVLALY 171

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
               G    Q L SL    +     +   +     ++  +   ++     L+L   +   
Sbjct: 172 MLLYGGQFWQGLLSLFPKPWGPRIGEALAL---SFQNFLISQLVLGFIMALMLVPVFGFL 228

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            VP  +  G++  ++ +IP    +     +  LL   +I+ +  + L   I   + D+ +
Sbjct: 229 RVPFGLLFGLLIGLLEVIPLVGGVIGIGAAAVLLAFQDIWLSLKVVLVSLIVQQVKDRVI 288

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P L+G  I L  +     L+ G +  G+LG+ +   L +++  +++ +  A    ++++
Sbjct: 289 APRLMGELIGLNPVWILIALLVGAQLGGILGVIVAIPLSSVVKSLYEIARSADLAAEDEL 348

Query: 357 SS 358
            S
Sbjct: 349 GS 350


>gi|325475471|gb|EGC78652.1| membrane protein [Treponema denticola F0402]
          Length = 372

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 135/357 (37%), Gaps = 10/357 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-------KEESSTFLAV 64
              ++  ++++       + + +L + +I     P+Y+  +S+              LA 
Sbjct: 14  FFVLLAGMLILVGKLFLPYASVLLWSAVIYVLVRPLYNKILSRMNKEKKTFPIKKRLLAG 73

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  + +    L F+      + K LV  +    ++        S        + L  
Sbjct: 74  SFAIITVLVVAGVLFFVVIKIFGQGKILVQNIQSFLENINNSESGFSKTDIAAIVNRLSM 133

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +             L ++  D I R+A+        + LS++F   AL+FFY DG  +
Sbjct: 134 GTVDISNLDLQKEFLNLLSSSSDKILRYATSLVKNAGSFFLSLVFFAFALYFFYVDGAYL 193

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L             K+   + ++  + F G+ +++  + L     Y + GV S + L
Sbjct: 194 FSLLKHAIPIDN-ETSDKLFSKIGEITTNLFKGLFLVSFYQCLASFIVYLIFGVQSALLL 252

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++T     +P     + +  V + L     +       +     +  +D  LRPF +  
Sbjct: 253 AILTFFSTFLPLVGCGLIWFPVGVGLCFTDGLAKGLIFLVVAGSIISFMDNFLRPFFLKD 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            IK+  L  FF ++GGV      G+ +GP+++ L   I   ++  I+E KE    NF
Sbjct: 313 RIKIHPLLIFFSMLGGVSMFSFDGIILGPMIVILFFTILDMAL-DIEEKKENDEDNF 368


>gi|284051289|ref|ZP_06381499.1| hypothetical protein AplaP_07427 [Arthrospira platensis str.
           Paraca]
          Length = 382

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 116/327 (35%), Gaps = 9/327 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ ++++  +  P+ +   S  +       ++  ++++       L +    + ++ 
Sbjct: 40  IILIMISVVLAASIIPLVNWVQS-LKMPRWLAVIVVYLTLIGGITGLGLIIGPSVVDQIN 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV ++ +  +  + +   ++   G    + +     +        S T         + 
Sbjct: 99  LLVRQLPIFAERSLDLVSNIASSLGEDIPALIDRLVDT-------QSLTNWVIRSSQQLI 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             +       +    S+I  +    +   D  ++ +    L  + +       +  V + 
Sbjct: 152 LRSYGITRGIVGGVFSLILSLFVSGYMVADSKTLVKSFVQLFPYPWNDRLAAQAVPVGRR 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           I S   G  I++   G+ + +     G+    + LG I     +IP   PI     ++ +
Sbjct: 212 IGSYIRGRLIVSAILGVSITTCLGFLGLKDYALGLGAIAGFTNLIPFLGPILGAIPALVV 271

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +    F    + L   I   +    L P LVG  + +  L     ++ GV+ +GL+G  
Sbjct: 272 ALAKGGFLFFWVLLLYVIVQNLETYVLDPLLVGSSVGVHPLYQLLSVLAGVQLLGLIGAL 331

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKI 356
           I P   A IA + +   +  K   E+ 
Sbjct: 332 IVPPWCAGIAALVENLYLEPKRLAEQQ 358


>gi|295090070|emb|CBK76177.1| sporulation integral membrane protein YtvI [Clostridium cf.
           saccharolyticum K10]
          Length = 379

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/349 (14%), Positives = 118/349 (33%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E     + I+  +I    +  + F    L GFF P +   +I   + P+      +  
Sbjct: 1   MEEAKRYLRTILNILIPLTGIYLVCFWGPKLLGFFIPFVIGWVIALIANPLVRFLERRMR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--P 114
                 + +  V V+ L I+ L  +      E+++ +  +    ++     R   +    
Sbjct: 61  IVRKHGSALIIVGVLALIILLLYLVIGKLYTEIRDFIGDLPALYENAALEIRGALENGGR 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              +  + + + +             + +         A        +  ++ +  I++ 
Sbjct: 121 LFEFLPDEFQETVVRFTENLGSYMGEIVSKAAAPTVEIAGNVAKGIPNALVNTVITILSA 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           + F  +   I + L  +       Y   + +    VI   FL    I     ++L   + 
Sbjct: 181 YIFIAEQERIMEWLRKILPEFILRYIAYLKKDARGVIGGYFLAQFRIMFVVAVILAVGFL 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              V   + L V+ +I+  +P     +       + +    +      L   +   +  +
Sbjct: 241 FLDVSYGLVLAVLISILDFLPVFGTGTALFPWAAVKLFTGDYGYAAGLLILYVVTQVARQ 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++P +VG  + LP L T F L  G +  GL G+ +   +  +    +K
Sbjct: 301 LIQPKIVGDSMGLPPLMTLFLLYLGFKMKGLAGMILAVPIGLIFINFYK 349


>gi|229815777|ref|ZP_04446102.1| hypothetical protein COLINT_02826 [Collinsella intestinalis DSM
           13280]
 gi|229808693|gb|EEP44470.1| hypothetical protein COLINT_02826 [Collinsella intestinalis DSM
           13280]
          Length = 387

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 114/350 (32%), Gaps = 15/350 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-----------ESSTFLAVIAT 67
           +++ +L  +   F PVL  L   F      S                       + V++ 
Sbjct: 30  VVIGALSAVINIFFPVLLGLGFAFVLNVPVSGMERMLGRLVERLPEEKRPQPGLVTVVSI 89

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V V+       +      + E+      V       +P    +    G      +     
Sbjct: 90  VLVLIAIAGVAVMAVTMLVPELIASARTVAPLLAERLPEIERVLAAEGVDVDKLMAWLQP 149

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF----FYRDGFS 183
           +   + +      L   G+  I           +    S +F  +   +        G  
Sbjct: 150 AAGSASRSQGLQGLMNFGLGSIATSVFAAARSTVSVVSSTVFAFVIAVYVLASKRVLGRQ 209

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +++ +D+       +  + ++ +          G  + A   G ++  A+ L  +P    
Sbjct: 210 VNRMMDAHLAPRHASRIRHVAALATDTYSKFLSGQCLEACILGTLIFIAFSLFRLPYAGL 269

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +G +TA+ A +P     +  A+  +L +  +   A    +      F+ ++ + P +VG 
Sbjct: 270 IGFLTAVFAFVPYVGAFASCAIGAFLTLLASPGQAIICVIVYLAVQFVENQFIYPHVVGS 329

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + L  L T    + G +  G++G+     ++A++  + ++        +
Sbjct: 330 SVGLSALWTLIAALVGGKLFGIVGIVFFIPIVAVLYELVRQWTNTRLAER 379


>gi|260899709|ref|ZP_05908104.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|308106878|gb|EFO44418.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ4037]
 gi|328469371|gb|EGF40317.1| hypothetical protein VP10329_10821 [Vibrio parahaemolyticus 10329]
          Length = 381

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 130/349 (37%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +I  +++ +   ++ F  PV+   II     P+               A  
Sbjct: 17  MVESAIRIGLIFVLLMFTYDIIRPFILPVIWGAIIAVALLPLTKKLQRAYGGRRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + PL+ +    +      +  +             ++D P           
Sbjct: 77  IALLGIALLVTPLVMVSGSIVDGATHALDVLQNGQVKIPGPKASVADWPLVGDKLYEVWT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I +      + +  +           L   L  I  +     F     S++
Sbjct: 137 LFATNLEQAIQTFMPQIKSALTSLLGMVGGV----LGSLLLSILSLAIAAGFMTYSESLA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L 
Sbjct: 193 SGLQTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I  I+ +    A ++   V  Y+ +  +   AT   +W A+   + +  L+P  +G  +
Sbjct: 253 LILMILCIAQLPALLAVLPVIGYMYMTQDSTTATMFTVW-AVVGALSENLLKPMFMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +P      G +GG+   G++GLF+G V++A+   ++   +   K  ++
Sbjct: 312 DVPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWLSIEKAQQQ 360


>gi|317481222|ref|ZP_07940293.1| hypothetical protein HMPREF1007_03412 [Bacteroides sp. 4_1_36]
 gi|316902555|gb|EFV24438.1| hypothetical protein HMPREF1007_03412 [Bacteroides sp. 4_1_36]
          Length = 371

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 106/336 (31%), Gaps = 11/336 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV-PLLFL 81
               L G   P   A +I +  +P+ + F  +    +  +++   +  + +        L
Sbjct: 27  LFKRLSGVLLPFFIAWLIAYLIYPLVTFFQYRLRLKNRVISIFCALFSILIVGGTAFYLL 86

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               M E   +   V+    +G         +   +  +          +   +L+    
Sbjct: 87  VPPMMDEFVRVKDLVIDYFSNGTHDGNVPKTLSEFLRENIDTQFVTQLFKEENMLNAIKE 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +   +      F     +   +++ + F   D  SIS+    L    +  +  
Sbjct: 147 TVPRLWSLLSESVNLLFSFF----TFFLILLYIIFILLDYESISEGWPHLVPQKYRPFVI 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   V   +   F G   +A+  G++    + +   P  + LG+    + ++P    I 
Sbjct: 203 NVMNDVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNLVPYLQIIG 262

Query: 262 FTAVSIYL----LIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           F    +         G  F            I   I D  + P ++G    L        
Sbjct: 263 FIPTIVLAILKAADTGGNFWIIIASALAVFIIVQAIQDGFIVPRVMGKITGLNPAIILLS 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 323 LSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINREK 358


>gi|210615412|ref|ZP_03290539.1| hypothetical protein CLONEX_02755 [Clostridium nexile DSM 1787]
 gi|210150261|gb|EEA81270.1| hypothetical protein CLONEX_02755 [Clostridium nexile DSM 1787]
          Length = 372

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 105/336 (31%), Gaps = 2/336 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +   + +V    L  FF P +    I F + P+      + +      + I  ++V
Sbjct: 15  AFSLIGTILFIVIGIKLLWFFMPFVIGWFIAFIANPLVCWLEKRLKIVKKLGSAIIIIAV 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLS 128
           +   +  L F       E+  L++             + + +   G++    E      +
Sbjct: 75  LAGVVSALYFGISKLADEVGSLITNFPQMYSELEKGMKDIGESFQGVFRLLPEGIQTGWN 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +   L     +     A           +S I  I+A +FF  +   +    
Sbjct: 135 AVVANLDNTMGNLIGKISEPTVEAAGNLAKSIPSILVSTIVTIVAAYFFIAERDEVIVWF 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +           +   +   +   F     I I  G++L   + +  V     L ++ 
Sbjct: 195 KKITPKPIQQRMTLVIDNLKYAVGGYFKAQFKIMIVVGVILFIGFEIMQVNYSALLAILI 254

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A +  +P     +         +    +  T + L       +V + ++P LVG  + + 
Sbjct: 255 AFLDFLPVFGTGTAIWPWAVYKVLSGDYKMTIMLLVLYGVTQLVRQLIQPKLVGDGLGMQ 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L     L  G +   LLG+     +  +   ++K 
Sbjct: 315 PLVALVLLFVGYKVGSLLGMIFAVPVGMIAINMYKA 350


>gi|170748558|ref|YP_001754818.1| hypothetical protein Mrad2831_2140 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655080|gb|ACB24135.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 700

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/370 (11%), Positives = 100/370 (27%), Gaps = 45/370 (12%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++   I+ +LYF +  F P+  AL++ F   P+ +     +        + A    + L
Sbjct: 41  VVVGATIIAALYFGREIFIPIAIALLLSFVLTPLVN-----RLRRLRLPRLAAVGVSVLL 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  L     ++  +L   V             L + P G     +     +   + 
Sbjct: 96  TVGIVAALATLIGIQAADLAGDVPRYRDTIERKIDGLRNSPVGHVTQYVANIGRALHGAK 155

Query: 134 KILSETFLKTNGIDFI--------------------------------------PRFASR 155
           +  S                                                      S 
Sbjct: 156 EAGSPETQSAAQQSATPPSTPPSTPPSTPSPGPEPTQAAPKPVLVEVATTPPGSLEMLST 215

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                +    ++  + + L F       +  ++  L                 K +   F
Sbjct: 216 VLTPVMHPLATVGIVFVVLLFVLMQREDLRDRMIRLAGSSDLHRTTVAIDDAAKRLSRYF 275

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-- 273
           +    +    G+V+G   ++ GVP+ V   +  A+M  +P    +    + + L      
Sbjct: 276 VVQLALNAAFGVVIGIGLYIIGVPNPVLWAIFAALMRFVPYLGAVLSAILPMALAAAVDP 335

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                  + +   +   +  +   P   G    L         +      G +GL +   
Sbjct: 336 GWNMMIAVAILFIVLEPLTGQVFEPIFYGQSTGLSPFAVLVSALFWTWLWGPVGLLLSTP 395

Query: 334 LMALIAVIWK 343
           L   + V+ +
Sbjct: 396 LTVCLVVLGR 405


>gi|24113821|ref|NP_708331.1| putative permease [Shigella flexneri 2a str. 301]
 gi|30063867|ref|NP_838038.1| putative permease [Shigella flexneri 2a str. 2457T]
 gi|110806423|ref|YP_689943.1| putative permease [Shigella flexneri 5 str. 8401]
 gi|24052909|gb|AAN44038.1| putative permease [Shigella flexneri 2a str. 301]
 gi|30042122|gb|AAP17848.1| putative permease [Shigella flexneri 2a str. 2457T]
 gi|110615971|gb|ABF04638.1| putative permease [Shigella flexneri 5 str. 8401]
 gi|281601894|gb|ADA74878.1| putative permease perM [Shigella flexneri 2002017]
          Length = 353

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPVLMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 353


>gi|291451527|ref|ZP_06590917.1| integral membrane protein [Streptomyces albus J1074]
 gi|291354476|gb|EFE81378.1| integral membrane protein [Streptomyces albus J1074]
          Length = 467

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 97/309 (31%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      ++AL++     P  ++   +          +  V
Sbjct: 97  RLLVLAGTLWVLMKVIVSVQLVVFAFIAALLVTALLQPTVTAL-RRMGMPRGAATAVTAV 155

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  +  L S+V                     W          
Sbjct: 156 LGFVIMGLVGWFVVWQVMENIDTLASQVQDGIDELR------------GWLLNSPFHVTE 203

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +         + +         + ++    ++  + +  F   DG  I +  
Sbjct: 204 DQINDIAKTLRDAVGTNTEELTSAGLEGVTVLVEVLTGMVLAMFSTLFLLYDGKRIWRWT 263

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L                 + + +   G  ++A+ + + +G   W   VP  V L V  
Sbjct: 264 LNLVPAQARPGIAGAGPRAWRTLTAYVRGTVMVALIDAIFIGLGLWFLDVPMAVPLAVFI 323

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +F A  + +       I    L+PF++G  +++
Sbjct: 324 FLFAFIPLVGAVVSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHILQPFILGRAVRV 383

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 384 HPLAVVLSV 392


>gi|26248851|ref|NP_754891.1| putative permease PerM [Escherichia coli CFT073]
 gi|227887521|ref|ZP_04005326.1| permease PerM [Escherichia coli 83972]
 gi|300981820|ref|ZP_07175752.1| permease, PerM family [Escherichia coli MS 45-1]
 gi|301046368|ref|ZP_07193529.1| permease, PerM family [Escherichia coli MS 185-1]
 gi|26109257|gb|AAN81459.1|AE016764_141 Putative permease perM [Escherichia coli CFT073]
 gi|227835871|gb|EEJ46337.1| permease PerM [Escherichia coli 83972]
 gi|300301650|gb|EFJ58035.1| permease, PerM family [Escherichia coli MS 185-1]
 gi|300408897|gb|EFJ92435.1| permease, PerM family [Escherichia coli MS 45-1]
 gi|307554513|gb|ADN47288.1| putative permease [Escherichia coli ABU 83972]
 gi|315292422|gb|EFU51774.1| permease, PerM family [Escherichia coli MS 153-1]
          Length = 353

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 106/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLSMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDG 348


>gi|15803016|ref|NP_289046.1| putative permease [Escherichia coli O157:H7 EDL933]
 gi|25307074|pir||G85892 probable permease perM [imported] - Escherichia coli (strain
           O157:H7, substrain EDL933)
 gi|12516881|gb|AAG57603.1|AE005479_1 putative permease [Escherichia coli O157:H7 str. EDL933]
          Length = 353

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAXQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 300 LFSEAVNLHPLVIIXSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 353


>gi|332174221|gb|AEE23475.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 356

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 108/357 (30%), Gaps = 12/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +M  +++  + + L  L     PVL A +I +      S    +     +F
Sbjct: 10  KRKFSDPDSVMLLIMLIAVFLLLAVLGTILMPVLVAAVIAYLLDWPVSQLS-RAGLRRSF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +   S + L I+  + +      +   L+ ++     H       L +         
Sbjct: 69  ACSLVIFSFLTLCILTFIGIVPVVSQQSINLIREMPQIWGHAQVWVLHLPEQYPDFVHLG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L       +        +  + +   +           + ++ + + +FF  +D 
Sbjct: 129 DVQDMLDGINERIV--------SLGEQLLSASVSSLGSLASLLIYLVLVPLMVFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   L  L         K++   +   I +   G  I  I  G V    + L  +   
Sbjct: 181 DQLLANLSPLLP-SQRRLIKQVGSEMNTQIANYIRGKVIEIIIVGTVSAVTFALMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + LGV+     +IP       T       L   G   +   L +   +   +    L P 
Sbjct: 240 LLLGVLVGFSVLIPYIGAAVVTIPVAVVALFQWGITPDFWWLMIAYGVIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    + L  +     ++      G  G+F    L  L+  +       ++E    +
Sbjct: 300 LFSEAVSLHPVYIIIAVLFFGGLWGFWGVFFAIPLATLVKAVANAWKGPLQELPPAV 356


>gi|324328293|gb|ADY23553.1| membrane protein [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 355

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPVVIKQLQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 102 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 332 SVPILAVIRTVI 343


>gi|118589355|ref|ZP_01546761.1| hypothetical protein SIAM614_07418 [Stappia aggregata IAM 12614]
 gi|118438055|gb|EAV44690.1| hypothetical protein SIAM614_07418 [Stappia aggregata IAM 12614]
          Length = 372

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 129/349 (36%), Gaps = 5/349 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   ++      SL  +  FF  ++ A+++    +P++    ++        AV+ T+ 
Sbjct: 29  AIRLGVLGLFAYFSLQLVAPFFLFLVWAVVLTVALYPVFGWLTARLGGRKVLAAVLITLC 88

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I P+  L    +  ++     V        P+P  L+ +P          +    
Sbjct: 89  CLAIVIGPVAVLVVSLVDTLQGWYHGVAGGVLKLPPLPEKLAALPVVGAKLSEIWQLAGQ 148

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                              I    +      L +       II     +    ++++   
Sbjct: 149 GLEQVFAKVGPTLVPAGSRILGVLASLSGSVLFFI----VSIILAGCLFVPAPALAKGAK 204

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
              + +      +   +    IR+   G+  +A+ +GL+ G       VP    L  +  
Sbjct: 205 LFADRIIAPRGSEFVDLAGATIRNVSRGVIGVAVVQGLLTGIVLIAFSVPLAGVLTFVAL 264

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ ++  G  +      I+     ++  A  LF    + + ++D  LRP L+   + +P 
Sbjct: 265 ILCIVQIGPALVIVPTIIWAWSSWDLVPAL-LFTVLMVPVMLIDNVLRPILMSRGLNVPM 323

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    G++GG    GL+GLF+GPV++A+   +    + A ++   + ++
Sbjct: 324 LVILIGVLGGTIAYGLIGLFLGPVILAVFYELVIAWVKAGEKRSAEETA 372


>gi|302562443|ref|ZP_07314785.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302480061|gb|EFL43154.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 365

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 108/334 (32%), Gaps = 14/334 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     P++  L++   +WP       ++  +    A + TV  + +       +     
Sbjct: 41  MWSVVWPLIVGLLLTTLTWPPTRFL-RRRGMAPALAASLVTVLFLLVAAGTAALIAVPVT 99

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E  +L   VV   QH               WA+           +    + T    +  
Sbjct: 100 SESGKLADGVVEGVQHLRE------------WAAGPPLNIGEAQIAGAFDTATARIQDSA 147

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I   A           ++ +  +  +FFF +DG      L              ++  
Sbjct: 148 GAIATTAVTGVSTVFSGVVTAVLALFLMFFFLKDGPRFLPWLARQLPGRLATDVPAVAAR 207

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAV 265
               + +      ++ + + + +G   WL  VP  + L V+T + A +P    +      
Sbjct: 208 CWDTLGAFVRSQALVGLLDAVFIGLGLWLLNVPLVLPLSVLTFVSAFVPIVGALFAGFVA 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +  L+   + NA  +     +   +     +P +    + L  +     +  G    G+
Sbjct: 268 VLIALVSNGLMNALLVLAVIVVVQQLEGNVFQPMIQSRGLGLHAVVVLLAVTLGGSVAGI 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  +   + AL+AV+W      + +   +  ++
Sbjct: 328 VGSLLAVPVAALLAVVWNYLREQLADPPREPRAD 361


>gi|260775444|ref|ZP_05884341.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608625|gb|EEX34790.1| predicted permease [Vibrio coralliilyticus ATCC BAA-450]
          Length = 361

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/359 (19%), Positives = 139/359 (38%), Gaps = 6/359 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +   ++   ++         ++ +   ++ A II    +PI+    ++        +
Sbjct: 6   KITSSHWVLIVALLAAGFACFLLVEPYINSIVMAFIISLLMFPIHEWIENRMPNHRNIAS 65

Query: 64  VIATVSVMCLFIV--PLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWAS 120
           +++   +    I+  PLLF+F   + +       V     H GI        +  G+   
Sbjct: 66  LLSCTLLT--VIIVLPLLFVFAAIVQQGSAFSQNVYQWVTHGGIQALFEHPWVVKGLSII 123

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +                   T+    +   +++      ++ L+   M+  LFF  RD
Sbjct: 124 NTYLPFDEIQPQEIGQKVAQFATSFGSNLVGISAKILGDATNFLLNFFLMLFVLFFLLRD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +  +   L  +   K+   V +V +S  +G  + AI +GL  G   WLAG P 
Sbjct: 184 HDKIIAAIRHILP-LSRSQEDKLLDEVEQVSKSAVMGSFLTAIAQGLAGGIGMWLAGFPG 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                ++     +   G  + +   + YL + G+   A  L +W    +  +D  LRP L
Sbjct: 243 LFWGTMMGFASFIPVVGTALIWIPAAAYLFLTGDTTWAIFLTIWSVAVVGSIDNLLRPLL 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + G   +  L  FF L+GG+   GL+GL  GP++ A+  V++       ++  ++   N
Sbjct: 303 MQGSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLIFAITMVLFNIYEEEFQDFLDEQDQN 361


>gi|168216394|ref|ZP_02642019.1| putative membrane protein [Clostridium perfringens NCTC 8239]
 gi|182381448|gb|EDT78927.1| putative membrane protein [Clostridium perfringens NCTC 8239]
          Length = 377

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 108/329 (32%), Gaps = 8/329 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMCLFI 75
            LY   G   P +  + I F                        +F   +  +  +    
Sbjct: 34  FLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNSKFFKGMKRSFSITLTFLFFILAIT 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLK 134
           + +LF+    +  +  L++ +                +        +     L +     
Sbjct: 94  LFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNLWKEI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   + +    + ++  F        +++ L++I  I  L         +   + +    
Sbjct: 154 LKVTSQIVGTSLGYLLDFTLGITYGVINFFLALILAIYMLASKEILISQLKLIIYAFVSK 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++ ++  ++     LG    A+  G++      +  +P  + + V+  + A+I
Sbjct: 214 NKADRIIELGKMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVTALI 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P       T  S ++++  +   A    ++  +   +    + P +VG  I L  L   F
Sbjct: 274 PVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALWVMF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++ G    G++G+ IG  +  ++  I K
Sbjct: 334 AMIVGGSLFGIIGMLIGIPIFGVVFKILK 362


>gi|116622078|ref|YP_824234.1| hypothetical protein Acid_2965 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225240|gb|ABJ83949.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 612

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/360 (13%), Positives = 99/360 (27%), Gaps = 20/360 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +     I    I+  ++  LY  +  F P+  A+ +     P  +   +    + T  
Sbjct: 5   QRLAVSSSIRTAGILIGVIFVLYAAREIFVPLAFAITLALILSPAVAWLQT-MRVARTLA 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV---------------- 106
             +  +  + L       +F   +    +L       +     +                
Sbjct: 64  VALVMMITIALACGTAWVIFNQLVDVANDLPRYQQNIDSKLKAIRAPGKGALGRATASVK 123

Query: 107 -PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                        A     +    P++           +       +       FL    
Sbjct: 124 ELGKELSAVPATPAPIPGARIGRRPENQPGRPVAVQVVDEPATELEYVRDVVRPFLGPFG 183

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
               ++I   F       +  +L  L          +        +    L   ++ +G 
Sbjct: 184 VAGMVLIFSVFLLTKQNDLRNRLFRLVGLDQLNMMTQALDDATSRVSRYLLMQFLVNVGF 243

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFL 283
           G + G+  +L G+P  V  G + AI+ ++P    I        + L +  N      +FL
Sbjct: 244 GTLCGAGLYLIGIPYAVLWGCVAAILRLVPYAGAIVAASLPFMLSLAVFDNWTPPLLVFL 303

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             A         + P L G    +  L      V      G  GL +   L   + V+ +
Sbjct: 304 LFATLEVGTGNFIEPMLYGAHTGISALALLLTTVFWTALWGPPGLILSTPLTVCVVVLGR 363


>gi|83593499|ref|YP_427251.1| hypothetical protein Rru_A2164 [Rhodospirillum rubrum ATCC 11170]
 gi|83576413|gb|ABC22964.1| Protein of unknown function UPF0118 [Rhodospirillum rubrum ATCC
           11170]
          Length = 369

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 126/352 (35%), Gaps = 9/352 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M   + I  W+I  ++   L + L+    P ++ L + +   P+          S  +  
Sbjct: 1   MNRDKQIRVWLIGILVFAVLIFLLRSVLLPFVTGLAVAYFLDPLADRLEKW-GTSRLWAV 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +  T+  + + ++ LL L      ++ + V+ +    +  +   R L D    +   +  
Sbjct: 60  IWITLGFVLVMVLALLVLLPLINGQIADFVTNMPEYARALVGKGRALLDNLVDVLGPDRM 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +   S  ++    +  +L       +       G   ++    ++   +  F+  RD   
Sbjct: 120 SDVTSSLEAAAGEATKWL-----GGLVNQLISGGAALINLVSVLVITPVIAFYMLRDWDV 174

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +D      +    +     + + I     G   + +  G        + G+   + 
Sbjct: 175 MVASIDRWLPRPYAPVIRAQMAEIDRTIAGFVRGQASVCLALGSFYAIGLTIGGLDLGLI 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G+I+ +++ IP    I+   VS+   L    +  +   +     +   I    L P LV
Sbjct: 235 VGMISGLLSFIPYVGTITGFIVSMGLALAQFDSWIDTAIIAGIFVVGQMIEGNYLTPKLV 294

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F L+ G    G LG+ +   L A+I V+ +  +     + 
Sbjct: 295 GDRIGLHPVWVIFALLAGGGLFGFLGVLLAVPLAAVIGVLVRFFLGRYLNSP 346


>gi|167624521|ref|YP_001674815.1| hypothetical protein Shal_2600 [Shewanella halifaxensis HAW-EB4]
 gi|167354543|gb|ABZ77156.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 383

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 106/336 (31%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + ++ I     P+ S     +         +A +
Sbjct: 12  KGFAISAFIIVILAGIKAASPIVVPFVLSVFIAVICNPMISWMTRHRAPR-----GLAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       I    W+ +            + L+
Sbjct: 67  LLMVFIVMMGLWLASVVGTSINEFSKQLPFYRDQLIEQFSWVVEKLAAFNIQISKEQILA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +            +     D     +Q+
Sbjct: 127 YFDPGVALSMTTNMLSGVGSVMANLFLIILTVVFMLFESNGFSTKMHLALDDPDMRLKQV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                     +    +  T++++G GL++G   +  GV   +  GVI 
Sbjct: 187 DRFL----------------NSVNQYMVIKTLVSLGTGLIIGVGLYFIGVDYALLWGVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     S+ L         A  + L       I+   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVLLAFIQLGPGAAGGVALLYLGTNTIMGNAIEPRYMGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 326


>gi|74318271|ref|YP_316011.1| putative permease [Thiobacillus denitrificans ATCC 25259]
 gi|74057766|gb|AAZ98206.1| putative permease [Thiobacillus denitrificans ATCC 25259]
          Length = 389

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 106/333 (31%), Gaps = 18/333 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L + +  F P++ A+II +   P                +++     + L +     L
Sbjct: 46  FVLDWAQAVFIPLVLAVIISYALAPPMRLLGRLHVPQIVGASLL-----LALIVGAGGSL 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
            Y    E   ++  +  A +      +             +        ++ +  +   +
Sbjct: 101 AYSLRDEAIGMIETLPQAAKKLRRTVQKEIAGLESGAIGNVQEAASQIERAARETASDPV 160

Query: 142 KTNGIDFIP---------RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              G+  +           +     +  L      + ++   FF    G +  ++L  + 
Sbjct: 161 VPRGVTRVQIEEPRFRLEDYLWNGTLGALSIVSLAVMVLFLAFFMMISGDTYRRKLVQIS 220

Query: 193 EHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              F       ++   +   I+   L         GL   +A+   GV      GV+  +
Sbjct: 221 GPAFSKKKITLQVLNEISVQIQRYLLVQAFAGAIVGLATWAAFSWLGVEHAALWGVVAGV 280

Query: 251 MAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + +IP    +     A  + LL  G++  A  +     +   +    L P+L G   ++ 
Sbjct: 281 LNIIPYLGAVIVAGGAALVGLLQFGSVSTALTVGGVSLVINSLEGYLLMPWLTGRANRMN 340

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +  F G++      G  GL +G  +M  I  I
Sbjct: 341 AVVIFIGVLFWGWLWGAWGLLLGMPIMIAIKAI 373


>gi|284163852|ref|YP_003402131.1| hypothetical protein Htur_0560 [Haloterrigena turkmenica DSM 5511]
 gi|284013507|gb|ADB59458.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 339

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 133/352 (37%), Gaps = 18/352 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +  ++  +  +S   +  F    L A+++ +   P+      +   SS   A+
Sbjct: 1   MNISKGFLLALVAVLAFLSWLLIAPFLQYALIAVLLAYVLRPVQRRLERRT--SSMIAAM 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  +  F++PL  +    + +   +V  +   +     V   + +            
Sbjct: 59  ALVLLTITGFVIPLAIILTVVIQDATRIVENLDADSVSVTEVESLIQE------------ 106

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      + S T     G   +   ++ +   F    +     +  L++  +DG  +
Sbjct: 107 --QTGMSVDLMSSLTDAARQGGQLVLEQSTAWLSAFTHALIGFGLALFMLYYLLKDGDKL 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +      L       +   + +V+ +  +G  +IA+ +GL+ G    + G+P+    
Sbjct: 165 IGWIRKRTP-LPDDVQDDLYTELDEVMHAVLIGHVLIALVQGLLAGIGLIVTGIPNAAFW 223

Query: 245 GVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VI  ++A+IP     + +    ++LL  G    A  LF++  + + + D  LRP +V  
Sbjct: 224 TVIMVVLALIPIIGTFLVWGPAVVFLLATGEPLFAVGLFVYSTVIVGLSDDYLRPLVVDR 283

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +L       G++GG    G +GLF GPV++  +              + +
Sbjct: 284 YAELNPAVIIVGVLGGAYAFGFMGLFFGPVILGALRATLTVFHDNYDRLERE 335


>gi|149910488|ref|ZP_01899128.1| permease PerM [Moritella sp. PE36]
 gi|149806448|gb|EDM66420.1| permease PerM [Moritella sp. PE36]
          Length = 355

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 110/355 (30%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +P  +  ++++      +YF      P L A+++ +         + +   S T+
Sbjct: 10  QERFSDPHAVTLFLLLVFGFSVIYFAGSLITPFLVAIVLAYLLDWPLIRLM-RLGLSRTW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI  +  + + ++  L L      +   LV  +    + G      L      ++ +E
Sbjct: 69  ATVIILLLFVTMMVMLTLGLIPTVWHQGVTLVKAMPTMLKQGQEFLLMLPQENPDIFNAE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L        Q   + S   + +     +   A           +  I + + +FF  +D 
Sbjct: 129 LIKAASLAVQDHVVKSGEMILSASFASLFDIA--------AILIYSILVPLLVFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + L S+          ++   +   I +   G     I  G      ++   +   
Sbjct: 181 TILVKALVSILPQNRRLAM-EVWTEMNGQIANYIRGKVFEIIIVGFCTWLVFFFTDLQYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L V+     +IP     + T   +   L   G     T + +   I   +    L P 
Sbjct: 240 ALLAVLVGFSVLIPYIGAAAVTVPVMVVGLFQWGLTPEFTYMMVAYGIVQALDGNLLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  +     ++      G  G+F    L  L+  +            E
Sbjct: 300 LFSEAVNLHPVAIIMSVLVFGGLWGFWGVFFAIPLATLVKAVLNAWPKRGDTPAE 354


>gi|154253766|ref|YP_001414590.1| hypothetical protein Plav_3329 [Parvibaculum lavamentivorans DS-1]
 gi|154157716|gb|ABS64933.1| protein of unknown function UPF0118 [Parvibaculum lavamentivorans
           DS-1]
          Length = 365

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 111/311 (35%), Gaps = 9/311 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q I+  + + + +  L+ LKG   P ++ + I +   P+     S    S      +
Sbjct: 3   IQRQAIIWALFIALFVAGLWLLKGILLPFVAGMAIAYFLDPLADKLESY-GLSRLAATGM 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + L IV L+ L      ++  LV       + G      + D   G         
Sbjct: 62  ITIVFLLLAIVMLIVLVPVLYNQLIALVEIFPALMRRGQEWLLTIGDGRLGRLLGVEGQD 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                +     S  +L       I       G+  +     I+   +  F+   D   + 
Sbjct: 122 VEQAIRQSLGGSLDWLVN-----ILTSVGSQGLQIVALLSLIVVTPVVAFYLLLDWDRMV 176

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++D+L         ++++R + +V+     G  I+ +  G +      L G+   + +G
Sbjct: 177 ERVDALLPRDHAETIRRLAREINEVLAGFIRGQVIVCLVLGTIYAVGLTLVGLRFGLIVG 236

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           ++  I++ IP    I    V + L +     +      +    AI  FI    L P LVG
Sbjct: 237 IVAGIISFIPYLGTILGFVVGLALALFQFGTDFVQVGMVIGVFAIGQFIEGNFLSPKLVG 296

Query: 303 GPIKLPFLPTF 313
             +KL  +   
Sbjct: 297 DRVKLHPVWVM 307


>gi|196039150|ref|ZP_03106456.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196029777|gb|EDX68378.1| putative membrane protein [Bacillus cereus NVH0597-99]
          Length = 355

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPIVIKQLQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 102 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 332 SVPVLAVIRTVI 343


>gi|331087276|ref|ZP_08336346.1| hypothetical protein HMPREF0987_02649 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408962|gb|EGG88423.1| hypothetical protein HMPREF0987_02649 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 397

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 114/350 (32%), Gaps = 14/350 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-------------EESSTFLAVI 65
           I+L +++FL     P +    I F      +                   +       V+
Sbjct: 30  IVLDAVHFLFSIAFPFILGGAIAFILNVPMNFMEKVFFSNQWAKNNKIVQKIKKPCSLVL 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWT 124
           + + V+ +  V +  +F      +  L   + +           L  +  G +   E   
Sbjct: 90  SIMLVLGIIFVVIFVVFPQLGKTILMLGESIQVFIPKLELWAEDLFQNNTGIIEWIETME 149

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I        + ++     A         + +S +F    L    +    I
Sbjct: 150 FDWDKMIQGGIDFLRNGAGSVLNTTFAAAKSIVSGLTTFFISAVFACYILLQKKKLTVQI 209

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +       +    I  +  +   +   G  + A+  G +   +  +  +P  + +
Sbjct: 210 QKVLYAFLPEKKVSTVLDICSLTYRTFSNFLTGQCMEAVILGTMFFISMSILKMPYALLI 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+ A  A+IP         +  +L++  N   A    +   +   +    + P +VGG 
Sbjct: 270 GVLIAFTALIPIFGAFIGCVIGTFLILMVNPMQAIGFIVLFLVLQQVEGNLIYPHVVGGS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + LP +     +  G   MGL+G+ I   ++++I  +++  +      K 
Sbjct: 330 VGLPSMWVLVAVSLGGSLMGLVGMLIFIPMVSVIYTLFRGYVYERLRKKN 379


>gi|323962179|gb|EGB57774.1| ydiK protein [Escherichia coli H489]
          Length = 370

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 135/356 (37%), Gaps = 6/356 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVALGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 355


>gi|319901043|ref|YP_004160771.1| hypothetical protein Bache_1175 [Bacteroides helcogenes P 36-108]
 gi|319416074|gb|ADV43185.1| protein of unknown function UPF0118 [Bacteroides helcogenes P
           36-108]
          Length = 374

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 114/346 (32%), Gaps = 11/346 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLL 79
           L+ L  L     P   A +I +  +P+ + F  K +          A  +++ +      
Sbjct: 25  LMLLKRLSSVLLPFFIAWLIAYLIYPLVTFFQYKLKLKNRIISIFCALFTLLAIGGTAFY 84

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    + E   +         +GI        +   +  +          +   +L   
Sbjct: 85  LLVPPMIQEFGRVKDLFTEYFSNGIYNSNVPRTLSEFLKENIDMQFLNQLLKEENLLDAI 144

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                 +  +   +      F  + L +++++    F   D  SIS+    L    +  +
Sbjct: 145 KETLPKLWSLLSESVNLLFSFFTFFLILLYIV----FILLDYESISEGWTHLVPQKYRPF 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              +   V   +   F G   +A+  G++    + +   P  + LG+   I+ M+P    
Sbjct: 201 VVGLLNDVKDGMNKYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGILNMVPYLQV 260

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLW------GAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I F    +  ++K          +        AI   I D  + P ++G    L      
Sbjct: 261 IGFIPTIVLAIVKAADTGGNFWIIIASATAVFAIVQAIQDGFIVPRVMGKITGLNPAIIL 320

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L      MG+LG+ I   L  L+   ++  I+  +   E  +S+
Sbjct: 321 LSLSVWGSLMGMLGMIIALPLTTLMLSYYQRFIINRENISEAKTSD 366


>gi|292559015|gb|ADE32016.1| probable permease [Streptococcus suis GZ1]
          Length = 376

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 108/344 (31%), Gaps = 7/344 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------KKEESSTFLAVIATVSVMC 72
           I  ++  L G    +    I  F                   K+   +   V   +    
Sbjct: 28  IYGAIQQLLGSMNSLFIGAIFAFILNVPMKKLEDQFEKISFLKKSKRSLAIVGVLIGFAL 87

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    ++ +    +  + ELVS    A    +       +  G +             Q 
Sbjct: 88  IVTGLVVIVLPTLVTTVSELVSVSSTAIPKSVNALTNFLESNGLLSGQIGDQIASFLDQL 147

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +   + L T  +  +    +      +   ++  F +  L           + L +  
Sbjct: 148 KNLTLISSLVTPILSGLVSNVTGIFSNTMTLIMAFFFTLAILGSKEHLQAMTRKFLQATL 207

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     I  ++        +   + A   G ++  +Y L+G+P     G++  +++
Sbjct: 208 PEKAVRVVNYIGEVIVDTYDRFLMSQIVEACIIGTLVFVSYSLSGIPYASMAGILAGVLS 267

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            +P   P S   +S   +   N   A        I   I    + P +VG  + LP L T
Sbjct: 268 FVPYIGPFSACLISALFVAVQNPLLALWSIALFQIIQLIEGNVIYPRVVGQSVGLPTLFT 327

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               + G    GLLG+     + A++  + +E + +  + + ++
Sbjct: 328 LAAALIGGNLFGLLGMVFFTPIFAVVYRLVREWVASRLKKQGEL 371


>gi|91211813|ref|YP_541799.1| putative permease PerM [Escherichia coli UTI89]
 gi|110642655|ref|YP_670385.1| putative permease PerM [Escherichia coli 536]
 gi|117624677|ref|YP_853590.1| putative permease PerM [Escherichia coli APEC O1]
 gi|191172962|ref|ZP_03034497.1| putative permease, PerM family [Escherichia coli F11]
 gi|218559417|ref|YP_002392330.1| permease [Escherichia coli S88]
 gi|218690608|ref|YP_002398820.1| putative permease [Escherichia coli ED1a]
 gi|237704999|ref|ZP_04535480.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300997972|ref|ZP_07181903.1| permease, PerM family [Escherichia coli MS 200-1]
 gi|306814441|ref|ZP_07448603.1| putative permease [Escherichia coli NC101]
 gi|331658631|ref|ZP_08359575.1| putative permease PerM [Escherichia coli TA206]
 gi|91073387|gb|ABE08268.1| putative permease PerM [Escherichia coli UTI89]
 gi|110344247|gb|ABG70484.1| putative permease PerM [Escherichia coli 536]
 gi|115513801|gb|ABJ01876.1| putative permease PerM [Escherichia coli APEC O1]
 gi|190906826|gb|EDV66430.1| putative permease, PerM family [Escherichia coli F11]
 gi|218366186|emb|CAR03932.1| putative permease [Escherichia coli S88]
 gi|218428172|emb|CAR09086.2| putative permease [Escherichia coli ED1a]
 gi|222034201|emb|CAP76942.1| permease perM [Escherichia coli LF82]
 gi|226901365|gb|EEH87624.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|294490984|gb|ADE89740.1| putative permease, PerM family [Escherichia coli IHE3034]
 gi|300304073|gb|EFJ58593.1| permease, PerM family [Escherichia coli MS 200-1]
 gi|305851835|gb|EFM52287.1| putative permease [Escherichia coli NC101]
 gi|307625955|gb|ADN70259.1| putative permease [Escherichia coli UM146]
 gi|312947066|gb|ADR27893.1| putative permease [Escherichia coli O83:H1 str. NRG 857C]
 gi|315288094|gb|EFU47494.1| permease, PerM family [Escherichia coli MS 110-3]
 gi|315300458|gb|EFU59688.1| permease, PerM family [Escherichia coli MS 16-3]
 gi|320196325|gb|EFW70949.1| hypothetical protein EcoM_01718 [Escherichia coli WV_060327]
 gi|323188215|gb|EFZ73508.1| hypothetical protein ECRN5871_3547 [Escherichia coli RN587/1]
 gi|323949486|gb|EGB45374.1| hypothetical protein ERKG_04023 [Escherichia coli H252]
 gi|323955730|gb|EGB51488.1| hypothetical protein ERLG_02994 [Escherichia coli H263]
 gi|324011198|gb|EGB80417.1| permease, PerM family [Escherichia coli MS 60-1]
 gi|331054296|gb|EGI26323.1| putative permease PerM [Escherichia coli TA206]
          Length = 353

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 106/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDG 348


>gi|30264667|ref|NP_847044.1| hypothetical protein BA_4841 [Bacillus anthracis str. Ames]
 gi|47530136|ref|YP_021485.1| hypothetical protein GBAA_4841 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321963|ref|ZP_00394922.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
 gi|30259342|gb|AAP28530.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           Ames]
 gi|47505284|gb|AAT33960.1| sporulation integral membrane protein YtvI [Bacillus anthracis str.
           'Ames Ancestor']
          Length = 365

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLVFVIVATVAGFYALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 NDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|229820773|ref|YP_002882299.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
 gi|229566686|gb|ACQ80537.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
          Length = 418

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 99/322 (30%), Gaps = 13/322 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L  ++  F  V  AL++     P  S              V+A +S +  F   L ++
Sbjct: 81  YGLLQVQIVFIAVFLALVVTSVLEPFVSWLSRWM--PRAIATVVAMLSAIVFFAGLLTYV 138

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
            Y    +  +L  +          +             S L     +   +  I +    
Sbjct: 139 VYSVAGQWTDLAKQFNDGIGQIFDLLEN----------SNLPITITADDINDWIETGRQW 188

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +    +            +    +        FF   G  + +   +           
Sbjct: 189 LVDHSGELAGQVFANAGGVFEAFTILALGTFVTIFFLVSGARMWRWFLNELPSRSRLTVH 248

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
             +            G  IIA+ +G++      + GVP    L V+  I A IP     +
Sbjct: 249 GAAGAGWYTFSGYARGTVIIAVIDGVLAYILLVIVGVPLAAPLAVLVFIGAFIPLIGAPA 308

Query: 262 FTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              ++  + +     + A  + +  A    +    L+P ++G  + L  +    G+  G 
Sbjct: 309 AMIIAAIVALAANGFWPAVIVTIGIAGIGQVEGHILQPLVMGKQVSLHPVVVALGVTAGT 368

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              GLLG  I   L+A+I  ++
Sbjct: 369 FLGGLLGAVIAIPLIAVIWTVY 390


>gi|154503457|ref|ZP_02040517.1| hypothetical protein RUMGNA_01281 [Ruminococcus gnavus ATCC 29149]
 gi|153795557|gb|EDN77977.1| hypothetical protein RUMGNA_01281 [Ruminococcus gnavus ATCC 29149]
          Length = 400

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/364 (13%), Positives = 111/364 (30%), Gaps = 21/364 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES----- 58
           I+  +I+ I L +   +            P L    I F      S F  K  ++     
Sbjct: 15  IVFTVILLIALWNYSLILDVLGQGVGIVYPFLLGGAIAFVINVPMSFFEEKLFQNQMMKN 74

Query: 59  -----STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
                     V   ++++ +  V  L +F          +S              W  +I
Sbjct: 75  KKVAQRLARPVSLIITLIVVVSVIGLVVFGVLPKLGDTFISIGKGIQSFMPKAQSWAEEI 134

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                  + W   L+      I       T+G   +                + +   + 
Sbjct: 135 FHNNKEIKEWLDSLTLDWDKIINEVVKFFTSGASSVLGSTFVVARRIASGITTFVIAFVF 194

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPA----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             +       ++ Q+  +               +  +  +   +   G  + A+  G + 
Sbjct: 195 ACYILLQKEKLNIQIRKVMYAYMKEDLVKKVLDVCSLSYRTFSNFLTGQCLEAVILGTMF 254

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                +  +P  + +GV+ A  A+IP         V  +L++      A    +   I  
Sbjct: 255 VICMGILQMPYAMLIGVLIAFTALIPIFGAFIGCVVGAFLILTVAPMKALVFVIMFLILQ 314

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I    + P +VG  + LP +     +  G   MG++G+ +   +++++  + +  +   
Sbjct: 315 QIEGNLIYPRVVGSSVGLPSIWVLAAVSIGASLMGIVGMLVFIPIVSVLYALLRGDVYEH 374

Query: 350 KENK 353
            E K
Sbjct: 375 LEKK 378


>gi|30022672|ref|NP_834303.1| hypothetical protein BC4597 [Bacillus cereus ATCC 14579]
 gi|206969761|ref|ZP_03230715.1| sporulation integral membrane protein YtvI [Bacillus cereus AH1134]
 gi|218233703|ref|YP_002369392.1| sporulation integral membrane protein YtvI [Bacillus cereus B4264]
 gi|296505068|ref|YP_003666768.1| hypothetical protein BMB171_C4239 [Bacillus thuringiensis BMB171]
 gi|29898231|gb|AAP11504.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206735449|gb|EDZ52617.1| sporulation integral membrane protein YtvI [Bacillus cereus AH1134]
 gi|218161660|gb|ACK61652.1| sporulation integral membrane protein YtvI [Bacillus cereus B4264]
 gi|296326120|gb|ADH09048.1| hypothetical protein BMB171_C4239 [Bacillus thuringiensis BMB171]
          Length = 372

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 311 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 358


>gi|224370719|ref|YP_002604883.1| putative permease [Desulfobacterium autotrophicum HRM2]
 gi|223693436|gb|ACN16719.1| putative permease [Desulfobacterium autotrophicum HRM2]
          Length = 386

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 129/339 (38%), Gaps = 6/339 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I++  + L  FFA ++  L++     P+      + +      ++I  + +  + +VP+L
Sbjct: 38  IILVCWLLSPFFATIVMGLVVMGAFAPLNRLLQRRLK--PGLASMITCLVIFFVVLVPVL 95

Query: 80  FLFYYGMLEMKELVSKVVLAN--QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           F       E  +L      A        V      +             LS      +  
Sbjct: 96  FFVGVLSKEAYDLYQMAKSAVLGNQVKQVLENTHVLERVNHLLATMGFDLSFSWEEMVKP 155

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            + L      ++ + AS               M+I +F+ + DG      +  +   L  
Sbjct: 156 VSELGRVVGLYLFQQASFVASNVFKIIFYFCLMLIVVFYLFIDGARFVDYIYDISP-LAD 214

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            + +K+     ++  +  +G  +  + +G+V G A+++ G+ S    GVI   +A +P  
Sbjct: 215 EHNEKLFCKFKEMAGAVLVGNGLGGLIQGVVGGGAFFMLGLASPFLWGVIMGFLAFLPIL 274

Query: 258 APISFTAVSIYLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                   +  +L+      A   + +  A+  + ++   +P +VG  +K+  L  FF +
Sbjct: 275 GIGVVLIPTGLILMLKERMAAGIFILVLYAVLSWGIEYVFKPKVVGDRVKMHPLVVFFSI 334

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +GG+   G+LG+  GP+++ L   +        +   E 
Sbjct: 335 IGGLEIYGILGIIYGPLIITLFLTLADIYFANFQAIVEP 373


>gi|312881830|ref|ZP_07741601.1| hypothetical protein VIBC2010_06219 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370476|gb|EFP97957.1| hypothetical protein VIBC2010_06219 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 357

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 112/353 (31%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    + +YF     AP+L AL++ +           +     T 
Sbjct: 10  KRRFSDPHAVSLVAILLFGFIVIYFFGNLIAPLLVALVLAYLLEWPVVQLS-RLSLPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +    + +V +  L      ++  L++ V         V   L      +   +
Sbjct: 69  AVILVILGFTSIMLVAIFGLVPTIWEQVGNLINDVPNMYVGLQSVIAELPRRYPELEHFQ 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +S+ ++  I     +    +  +   A+          + +I + + +FF  +D 
Sbjct: 129 IIESLVSNAKNQVIGVGETVVKGSLASLVSLAT--------LGVYLILVPLLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + Q               K+   + + I +   G  +  +  G V    + +  +   
Sbjct: 181 QQLVQMASGFLP-RNRRLATKVWDEMNEQISNYIRGKVMEILIVGTVSYVTFAVLDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V   +  +IP     + T       L   G   +   L    AI   +    L P 
Sbjct: 240 VLLAVAVGLSVLIPYIGAAAVTVPVAIVGLFQWGLSSDFYWLLAAYAIIQALDGNVLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  +     ++      G  G+F    L  L+  +W        E+
Sbjct: 300 LFSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLVKAVWSALPSHEDED 352


>gi|253997588|ref|YP_003049652.1| hypothetical protein Mmol_2223 [Methylotenera mobilis JLW8]
 gi|253984267|gb|ACT49125.1| protein of unknown function UPF0118 [Methylotenera mobilis JLW8]
          Length = 360

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 127/357 (35%), Gaps = 17/357 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK---------- 54
           M         + +  ++  +Y L     P L A I+ + + P+ +   +           
Sbjct: 1   MNKHTNTAWLVAVLSVVGIIYLLGPILTPFLIAAILAYIANPLVNKIEAIQCNSIAKKLS 60

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
            + S T   V+  V +  +  + LL +      E  +L  K+                 P
Sbjct: 61  FKPSRTIATVLVLVLLFAVLTIILLIMIPLLQHEFVQLSQKIPAYLNTAKTSLE-----P 115

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                  + T+         +        N    I    S  GM  + +  +++ + + L
Sbjct: 116 WLQKNFGISTEIDPTQIQAILTENWKTTGNFAKNIALSLSSHGMTIIGWLGNVVLIPLVL 175

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+   D   + Q++ +L         ++I+  +  V+     G   + +   +   +  W
Sbjct: 176 FYLLVDWNILLQKISTLLPRSLIGKTQEIAADIDAVLAEFLRGQLTVMLLMSVFYATGLW 235

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIV 292
           L G+   + +G+++ ++  IP         ++    +L  GN+ +   + +   I   + 
Sbjct: 236 LVGLEFALPIGILSGLLGFIPYLGFGLGLTLAAISGVLQYGNLNDLIPVLIVFGIGQLVE 295

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              L P+LVG  I L  L   F L+ G +  G  G+ +   + A IAV ++ +    
Sbjct: 296 SMALTPWLVGDRIGLHPLVVIFALMAGGQLFGFAGILLALPVSAAIAVGFRHAKQKY 352


>gi|313650953|gb|EFS15353.1| hypothetical protein SF2457T_0579 [Shigella flexneri 2a str. 2457T]
          Length = 350

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/354 (13%), Positives = 107/354 (30%), Gaps = 12/354 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 7   RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++    +      +   L+  +             L      +  + 
Sbjct: 66  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPVLMDAG 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 126 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 178 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 236

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 237 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L    + L  L     +V      G  G+F    L  LI  +           +
Sbjct: 297 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE 350


>gi|182625054|ref|ZP_02952831.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
 gi|177909674|gb|EDT72100.1| putative membrane protein [Clostridium perfringens D str. JGS1721]
          Length = 377

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 107/329 (32%), Gaps = 8/329 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMCLFI 75
            LY   G   P +  + I F                        +F   +  +  +    
Sbjct: 34  FLYKFLGILKPFIWGIAIAFILNIPVKLIEKNLGNGKFFKGMKRSFSITLTFLFFILAIT 93

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLK 134
           + +LF+    +  +  L++ +                +        +     L +     
Sbjct: 94  LFILFVIPQLLSSISTLMNSIPEYLSQFEKFLEVNAINNSQSQVMMQNIINELLNMWKEI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   + +    + ++  F        +++ L++I  I  L         +   + +    
Sbjct: 154 LKVTSQIVGTSLCYLLDFTLGITYGVINFFLALILAIYMLASKEILISQLKLIIYAFVSK 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++  +  ++     LG    A+  G++      +  +P  + + V+  + A+I
Sbjct: 214 NKADRIIELGNMCNEMFSKFILGQCTEALVIGVLCFIGMIILKMPYALLISVVIGVTALI 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P       T  S ++++  +   A    ++  +   +    + P +VG  I L  L   F
Sbjct: 274 PVFGAFLGTIPSAFIILIIDPIKALWFIIFIIVLQQLEGNLIYPRVVGSSIGLSALWVMF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++ G    G++G+ IG  +  ++  I K
Sbjct: 334 AMIVGGSLFGIIGMLIGIPIFGVVFKILK 362


>gi|16760543|ref|NP_456160.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141696|ref|NP_805038.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213052909|ref|ZP_03345787.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213612364|ref|ZP_03370190.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646713|ref|ZP_03376766.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289825924|ref|ZP_06545083.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25307060|pir||AH0703 probable membrane protein STY1759 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16502839|emb|CAD02001.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137324|gb|AAO68887.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 372

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/358 (18%), Positives = 135/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 357


>gi|290957036|ref|YP_003488218.1| integral membrane protein [Streptomyces scabiei 87.22]
 gi|260646562|emb|CBG69659.1| putative integral membrane protein [Streptomyces scabiei 87.22]
          Length = 374

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 107/344 (31%), Gaps = 22/344 (6%)

Query: 10  GIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             +  ++  ++ V ++     +    P+L AL+      P Y   ++    + +  A + 
Sbjct: 29  SALTLLVTGVVYVGVWICVTFQTTVTPILIALLGTALLGPFYRRLVA-MRFNKSLAAGLT 87

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             +V+ +       +    +    +++S +  A +                         
Sbjct: 88  CAAVVVVMGGAAYIVVAALIDTGDQIISSLRQAAKSLSD-----------------EFGL 130

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                     +   L +                  ++  + +  ++ +FFF RD      
Sbjct: 131 AGTSLDDLAQNAKELLSKFGGTAASGVLTGVSAVSEFLAAAVLAMLLMFFFLRDSDRAVA 190

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L SL         + ++R   + I     G T+IA  +G+ +     +  VP  V LG 
Sbjct: 191 SLHSLAPRGSGDTLEVMARRAFRAIEGYMRGTTLIAFIDGVCIAVGLLILQVPGAVGLGA 250

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  + A IP     +S     +       +  A            +    L+P +    +
Sbjct: 251 LVFVGAYIPYLGAFLSGAVAILVAFADRGLVTALWAVGVVFAVQLLEGNVLQPMIHSRTV 310

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++        L  G    G+LG+ +   L A ++ +  E     
Sbjct: 311 QMHPAAILLALTAGASLAGILGMLLAVPLTAAVSGVLSELRSRY 354


>gi|75762049|ref|ZP_00741959.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899750|ref|YP_002448161.1| sporulation integral membrane protein YtvI [Bacillus cereus G9842]
 gi|74490456|gb|EAO53762.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218541741|gb|ACK94135.1| sporulation integral membrane protein YtvI [Bacillus cereus G9842]
          Length = 372

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 11  RLIFVIVATIAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 191 YDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 311 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 358


>gi|15596822|ref|NP_250316.1| hypothetical protein PA1625 [Pseudomonas aeruginosa PAO1]
 gi|9947592|gb|AAG05014.1|AE004590_5 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 355

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 6/334 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            +     ++ L+  +     +   P P W++ +P        W   +             
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWDSIDQQGVAFFYVLKP 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                 +++   +++ G   L+  LS+I +     FFYRDG  +   +    E L     
Sbjct: 139 YVGEVGNWLLARSAKIGGGILELVLSLILIF----FFYRDGPRLESIVHRALERLIGNRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P+
Sbjct: 195 EHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLL-MVPPL 253

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 254 VWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGGL 313

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              G +GLF+GP+L+A+   +  + I +      
Sbjct: 314 LAFGFMGLFLGPILLAVAYNLLSDWIASTPRTPP 347


>gi|116049570|ref|YP_791626.1| hypothetical protein PA14_43510 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296390001|ref|ZP_06879476.1| hypothetical protein PaerPAb_17706 [Pseudomonas aeruginosa PAb1]
 gi|313106640|ref|ZP_07792863.1| putative permease [Pseudomonas aeruginosa 39016]
 gi|115584791|gb|ABJ10806.1| putative permease [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310879365|gb|EFQ37959.1| putative permease [Pseudomonas aeruginosa 39016]
          Length = 355

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 6/334 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            +     ++ L+  +     +   P P W++ +P        W   +             
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWNSIDQQGVAFFYVLKP 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                 +++   +++ G   L+  LS+I +     FFYRDG  +   +    E L     
Sbjct: 139 YVGEVGNWLLARSAKIGGGILELVLSLILIF----FFYRDGPRLESIVHRALERLIGNRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P+
Sbjct: 195 EHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFTIAGVPGAMLLGLLTFACSLL-MVPPL 253

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 254 VWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGGL 313

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              G +GLF+GP+L+A+   +  + I +      
Sbjct: 314 LAFGFMGLFLGPILLAVAYNLLSDWIASTPRTPP 347


>gi|297544522|ref|YP_003676824.1| protein of unknown function UPF0118 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842297|gb|ADH60813.1| protein of unknown function UPF0118 [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 341

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 130/350 (37%), Gaps = 16/350 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKG------FFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +  + ++I+  I +  +F+K         +P   A ++ +   P+   F SK   S
Sbjct: 1   MQVKKIYLFFLIIAAIGLLYFFIKNWVSIKNILSPFFIAGLVAYLLNPMVKFFNSK-GLS 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           + F  ++  + V    ++   ++F   + EM   ++ +    +    +   L        
Sbjct: 60  TFFSILLVFLIVTLGILIFSFYIFPLMINEMIAFITMIPFYIEELQNILIQLKFNYFSYL 119

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +       +  +L  L  + +       +           L   +  I + I  F+F 
Sbjct: 120 PPQFEKVLDKNLNTLNNLFASRVDMAFKSTVA---------ILKNVIDAILVPIITFYFL 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     ++++ +    + + +  + R + K++         ++I  G++      L  +
Sbjct: 171 KDKNLFKKEIEKIIPSKYHSSFFTLLRKIDKILSKYIRAQIYLSIFVGILTSIGLSLIKI 230

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +G++T ++ +IP   PI     ++ L    ++       +   +   I +  + P
Sbjct: 231 KYAFLVGLLTGVLNIIPYIGPILSIIPAVLLGFLDSLSKGIWALVVCLLVQQIENAFITP 290

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            ++   + L  +   F L+ G    G+ GL +   ++A++  +  E  + 
Sbjct: 291 KILSDSVGLHPITVIFSLIAGGELFGIWGLLLSVPIVAIVKAVVTEIFIE 340


>gi|309806960|ref|ZP_07700942.1| putative membrane protein [Lactobacillus iners LactinV 03V1-b]
 gi|308166580|gb|EFO68777.1| putative membrane protein [Lactobacillus iners LactinV 03V1-b]
          Length = 334

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/329 (17%), Positives = 116/329 (35%), Gaps = 4/329 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L F+      V+ A +  +   PI      K         +   + V+ + I+ +  L  
Sbjct: 5   LTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYRIPRIVTILALFMVVLIILILIVNTLLP 64

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               + K L+         G    R L   P            +S+ QS+   +      
Sbjct: 65  VIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILFNTGKASFN 124

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             ++ +    +   M+ +            LFF  +D   I+  L S         + K+
Sbjct: 125 LFLENLFGAVNVISMLIVTLLT----APFILFFMLKDSKKINPYLTSFMPPRLQNVFSKL 180

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              +   + S   G  I+A   G++    Y   G+   + L ++ A + +IP    +   
Sbjct: 181 LHDINIAVSSYVRGQLIVAFWVGVMFAVGYTTIGLKYGLTLAILAACLNLIPYFGTLISL 240

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + I  +      +F+   IE  I  + + P ++G  +K+  + T   L+G     
Sbjct: 241 IPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFISPLVMGSKMKMNPVTTILLLIGANSVA 300

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           GLLG+     + A I +I  +     ++N
Sbjct: 301 GLLGVIFAIPIYAGIKIIVVQVFDYYRKN 329


>gi|91789419|ref|YP_550371.1| hypothetical protein Bpro_3565 [Polaromonas sp. JS666]
 gi|91698644|gb|ABE45473.1| protein of unknown function UPF0118 [Polaromonas sp. JS666]
          Length = 356

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 118/357 (33%), Gaps = 9/357 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEES 58
           M+ T          +I  + +V+L+ L     P + A ++ +   P+ +    + K    
Sbjct: 1   MQFTHTQKSVAAWCLIAALAVVALWLLGPVLTPFVVAAVLAYALTPLVNRLDSLGKGRLP 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++     + + +   L +      E+  L  +V L               P    
Sbjct: 61  RVVAVLLVEFLFIVVLLGLFLLIVPIMAKELPLLREQVPLLADRLNTELA-----PWLAK 115

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                +  ++  ++  +        +    +       G + L    + + + +ALF+  
Sbjct: 116 FGFRVSLDVASIKAFVLKYLNANFEDVFGSLLSSLKLGGSVALAIMGNAVLIPVALFYLL 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  S   +   L        +   +     V+     G  ++ +   +   +   L G+
Sbjct: 176 MDWNSFVARALELVPPRLREGFDSFTSEADSVLGQYLRGQLLVMLIMAVFYATGLALFGL 235

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTL 296
              V +GV T +   IP         +++   +L   ++     + +   +   I    L
Sbjct: 236 DLAVPIGVFTGLAMFIPYLGFGLGLVLAMLAGVLEFASLKALVMVAVVYGLGQVIESLYL 295

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            P LVG  I L  L   F L+   +  G +G+ +   + A++ V  +    +   ++
Sbjct: 296 TPRLVGERIGLHPLAVIFALLAFGQMFGFVGVLVALPVSAVLLVGIRRLKASYIASR 352


>gi|42525852|ref|NP_970950.1| hypothetical protein TDE0336 [Treponema denticola ATCC 35405]
 gi|41815902|gb|AAS10831.1| membrane protein, putative [Treponema denticola ATCC 35405]
          Length = 372

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 135/357 (37%), Gaps = 10/357 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-------KEESSTFLAV 64
              ++  ++++       + + +L + +I     P+Y+  +S+              LA 
Sbjct: 14  FFVLLAGMLILVGKLFLPYASVLLWSAVIYVLVRPLYNKILSRMNKEKKTFPIKKRLLAG 73

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  + +    L F+      + K LV  +    ++        S        + L  
Sbjct: 74  SFAIITVLVVAGVLFFVVIKIFGQGKILVQNIQSFLENINNSESGFSKTDIAAIVNRLSM 133

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +             L ++  D I R+A+        + LS++F   AL+FFY DG  +
Sbjct: 134 GTVDISNLDLQKEFLNLLSSSSDKILRYATSLVKNAGSFFLSLVFFAFALYFFYVDGAYL 193

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L             K+   + ++  + F G+ +++  + L     Y + GV S + L
Sbjct: 194 FSLLKHAIPIDN-ETSDKLFSKIGEITTNLFKGLFLVSFYQCLASFIVYLIFGVQSALLL 252

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++T     +P     + +  V + L     +       +     +  +D  LRPF +  
Sbjct: 253 AILTFFSTFLPIVGCGLIWFPVGVGLCFTDGLVKGLIFLVVAGSIISFMDNFLRPFFLKD 312

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            IK+  L  FF ++GGV      G+ +GP+++ L   I   ++  I+E KE    NF
Sbjct: 313 RIKIHPLLIFFSMLGGVSMFSFDGIILGPMIVILFFTILDMAL-DIEEKKENDEDNF 368


>gi|301155545|emb|CBW15013.1| predicted inner membrane protein [Haemophilus parainfluenzae T3T1]
          Length = 348

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 104/346 (30%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +++YF     AP+L A+++ +      +    K +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFIAIYFFSDLIAPLLIAIVLAYLLEMPINFLTKKLKFPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++     + L ++    L      +   L+S +             L +    +    +
Sbjct: 71  TLVIFGGFLTLALLVFFGLVPTLWNQTISLLSDLPAMFNKLHEWLLALPEHYPELIDYTM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                S  ++  +          I  +               +    + + +FF  +D  
Sbjct: 131 IDTFFSAARAKILGFGESAVKLSITSLMNLV--------SLGIYAFLVPLMMFFMLKDKT 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +             K+   + + I +   G  +  +  G+V    +   G+   +
Sbjct: 183 ELLAGVSRFLP-KNRLLASKVWNEMQQQIANYIHGKLLEILIVGVVTYIIFLSFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V   +  ++P    +  T     +     G       L +  A+   +    L P+L
Sbjct: 242 LLSVAVGLSVLVPYIGAVLVTIPVALVAMFQFGISPTFWYLIVAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  L     ++      G  G+F    L  L+  +     
Sbjct: 302 FSEVVNLHPLVIIISVLIFGGLWGFWGVFFAIPLATLVKAVLNALP 347


>gi|206976093|ref|ZP_03237003.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217961880|ref|YP_002340450.1| hypothetical protein BCAH187_A4523 [Bacillus cereus AH187]
 gi|222097833|ref|YP_002531890.1| membrane protein [Bacillus cereus Q1]
 gi|206745845|gb|EDZ57242.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|217065152|gb|ACJ79402.1| putative membrane protein [Bacillus cereus AH187]
 gi|221241891|gb|ACM14601.1| probable membrane protein [Bacillus cereus Q1]
          Length = 355

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPVVIKQLQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 102 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFIGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQILAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  I  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSVLSFWFIGMKYPLLLGIIIGITDIIPYFGPILGAIPALMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGITIAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVAGIVGLLI 331

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 332 SVPVLAVIRTVI 343


>gi|324327274|gb|ADY22534.1| hypothetical protein YBT020_16520 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 373

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|124268207|ref|YP_001022211.1| putative permease transmembrane transport protein [Methylibium
           petroleiphilum PM1]
 gi|124260982|gb|ABM95976.1| putative permease transmembrane transport protein [Methylibium
           petroleiphilum PM1]
          Length = 353

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 116/345 (33%), Gaps = 8/345 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T    Q +   +I   + ++L+ L     P + A ++G+   P+      ++     
Sbjct: 1   MTLTAAQKQSLAWLVIGAALALALWLLGPVLTPFVIAAVLGYALNPLVDGLTRRRVPRPL 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  ++++ L +  LL +    + E+  L  ++           +     P      
Sbjct: 61  AALLVEVLALLVL-LAVLLLIVPIFVKELPVLRDQIPELLTRLDRWLQ-----PTLARFG 114

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              +  ++  ++  +        + I          G   L      + + + L++   D
Sbjct: 115 VDVSLDVASIKAFILGHVGDNTESWIATALDSLRIGGSFMLGLLGGAVLLPLVLYYVLVD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I  ++ +L        +        +++     G  ++             L G   
Sbjct: 175 WPQIVARVQALVPPRRRPGFDSFMGDCDRMLGQYLRGQLLVMGILAAFYSIGLALFGFDL 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + +GV T +   IP        A+++ +     G ++    + +   +   +    L P
Sbjct: 235 ALPVGVFTGVAVFIPYVGFGLGLALALLVGLLQFGGLYGIVAVAVVYGLGQVVESFYLTP 294

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            LVG  I L  +   F L+   +  G +G+ +   + A+  V ++
Sbjct: 295 RLVGERIGLHPITVIFALLAFGQLFGFIGVLVALPVSAVGVVAFQ 339


>gi|229012562|ref|ZP_04169736.1| hypothetical protein bmyco0001_30050 [Bacillus mycoides DSM 2048]
 gi|229168102|ref|ZP_04295830.1| hypothetical protein bcere0007_30610 [Bacillus cereus AH621]
 gi|228615346|gb|EEK72443.1| hypothetical protein bcere0007_30610 [Bacillus cereus AH621]
 gi|228748722|gb|EEL98573.1| hypothetical protein bmyco0001_30050 [Bacillus mycoides DSM 2048]
          Length = 376

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 119/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFVVFLKTIFFPVLLAGVLFYILHPFVSLLERK-GVSRIVSIASIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+   + +      ++  L+  +           R   +        E      +
Sbjct: 96  IVLGLFVFLAVTVIPIIKDQVNALIDNLPYFGHEIERAARKFGESNVIGRMQESLNVDFA 155

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++ T   ++    +  F S    + L + +    +   LF+  +DG  +    
Sbjct: 156 NIVKDSTMNFTKSLSSVTGNVTGFLSTITEVVLTFVM----VPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       K+I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAKRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   I      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPSMVLKVIIVMMIVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|212693716|ref|ZP_03301844.1| hypothetical protein BACDOR_03236 [Bacteroides dorei DSM 17855]
 gi|237709238|ref|ZP_04539719.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724467|ref|ZP_04554948.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265754915|ref|ZP_06089829.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663737|gb|EEB24311.1| hypothetical protein BACDOR_03236 [Bacteroides dorei DSM 17855]
 gi|229437026|gb|EEO47103.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456623|gb|EEO62344.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234526|gb|EEZ20105.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 378

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 112/351 (31%), Gaps = 11/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +GI+  +++  IL  +  L G   P   A +I +  +P+   F  K           +  
Sbjct: 13  RGILTAVVIIGILYLVNQLSGVLLPFFVAWLIAYLIYPMVIFFQHKLRLKNRVISIFVVL 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ +  +  + L    + E  +L   +      G         +   +       K  
Sbjct: 73  LVLLSIITLAFIGLVPPIIEEFGKLKELLTEYFIEGSKQAAIPGTVANFIKEHIDMLKIH 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +        +  +   +    +           +++  FF   D  +I++ 
Sbjct: 133 EALNENNFANTMRNVLPQVWTLLTQSVNIVVSVFTSF----IILLYTFFILLDYEAIARG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L          +I   V   +   F G   +A   G++    + +   P  +  G+ 
Sbjct: 189 WIKLVPIKHREMTIRIVTDVQDGMNKYFRGQAFVAFCVGILFSIGFLIIDFPLAIGFGLF 248

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ M+P    I+F    +  L       +   +   C FL   I   I D  + P ++
Sbjct: 249 IGLLNMVPYLQLIAFIPTVLLALLKAADTGENFWWILFCAFLVFCIVQIIQDGLIVPKVM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G    L        L      MG++G+ I     +L+   ++  I   ++ 
Sbjct: 309 GKITGLNPAIILLSLSVWGALMGIVGMIIALPCTSLMLSYYQRYIRIKEKE 359


>gi|254417043|ref|ZP_05030790.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196176210|gb|EDX71227.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 339

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 112/339 (33%), Gaps = 11/339 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +  + +  L+ +K       +A++   T   +    + +      F  +I+   
Sbjct: 5   SLLGLFLFILSVYILWKIKTVILLGFAAVVFATTLNRLVRFLL-RFRLKRAFAIIISVGF 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L     + +    + ++++L+  V +  Q       W+ ++       ++       
Sbjct: 64  CLGLLSGFFVLVVPPFIDQVQQLIDLVPIGLQQIPEWANWVRNLVPDGLLDDIG------ 117

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +   T    + +  +           +   L+++ +++       +     +   
Sbjct: 118 ----GLNVFTQNLRSWVTKLFGNFFDIFYSSIGLVLNMLLVVVVTIMLLANPEPYRRGFI 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +    ++I       +    +G+        ++ G   W+  V   +A G++  
Sbjct: 174 LLFPAFYRRRIQEILDECEDTLGGWAVGILFNMTVIAILSGLGLWILQVQLPLANGLLAG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I   IP   P       + L +  + + A  + +   +   I    L P ++   + L  
Sbjct: 234 IFTFIPNLGPTLSVIPPVALALLDSPWKALAVVILYIVIQQIESNILTPLVMQKQVSLLP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             T    +      G+ GLF+   ++ +  V  KE ++ 
Sbjct: 294 AVTLLSQMAFAIFFGIFGLFLALPIVVVAQVCLKEVLVK 332


>gi|163941007|ref|YP_001645891.1| hypothetical protein BcerKBAB4_3083 [Bacillus weihenstephanensis
           KBAB4]
 gi|229060952|ref|ZP_04198306.1| hypothetical protein bcere0026_30460 [Bacillus cereus AH603]
 gi|229134204|ref|ZP_04263020.1| hypothetical protein bcere0014_31170 [Bacillus cereus BDRD-ST196]
 gi|163863204|gb|ABY44263.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
 gi|228649224|gb|EEL05243.1| hypothetical protein bcere0014_31170 [Bacillus cereus BDRD-ST196]
 gi|228718321|gb|EEL69955.1| hypothetical protein bcere0026_30460 [Bacillus cereus AH603]
          Length = 373

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 119/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFVVFLKTIFFPVLLAGVLFYILHPFVSLLERK-GVSRIVSIASIYI 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+   + +      ++  L+  +           R   +        E      +
Sbjct: 93  IVLGLFVFLAVTVIPIIKDQVNALIDNLPYFGHEIERAARKFGESNVIGRMQESLNIDFA 152

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++ T   ++    +  F S    + L + +    +   LF+  +DG  +    
Sbjct: 153 NIVKDSTMNFTKSLSSVTGNVTGFLSTITEVVLTFVM----VPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       K+I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRQPAAKRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   I      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPSMVLKVIIVMMIVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|215487785|ref|YP_002330216.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967770|ref|ZP_07781985.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|215265857|emb|CAS10266.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287967|gb|EFR15872.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 353

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 106/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   I   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDG 348


>gi|110833634|ref|YP_692493.1| permease PerM [Alcanivorax borkumensis SK2]
 gi|110646745|emb|CAL16221.1| permease PerM [Alcanivorax borkumensis SK2]
          Length = 364

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 119/359 (33%), Gaps = 13/359 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               + + +   +++  + + + F  G  APV +A+++ +    +  +   +        
Sbjct: 12  SYFSDEEAVYLVVLLLAVGLVIAFFGGMLAPVFTAMVVAYLMQGLVGALERR-GVRRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWASE 121
             +  V  + L    L+ L      ++  LV  ++    ++G    R L      + + +
Sbjct: 71  VNLVFVLFVGLLTATLVVLLPMVWRQLVLLVQDQLPHMLKNGEIWLRGLPAHYPEVISMD 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  Q     +   + T  +  IP           +  + ++ + + +FFF +D 
Sbjct: 131 QVNSIVAVIQREVAEAGQGVLTLSLASIPNLV--------EIMVFLVLVPLLVFFFLKDR 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++   +              +   +   I +   G  I  +  G     A+ L  +   
Sbjct: 183 ETLVNWMLGFLPRK-RRILSHVWHEMDGQIANYVRGKAIEILLVGGSTFIAFILLDMNYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+  +  ++P       T     +     G   +   + +   I  FI    L P 
Sbjct: 242 VLLAVLVGLSVVVPYIGATVVTLPVAAVAYVQFGWGGDFALVMIVYGIIQFIDGNILVPL 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    + L  +     ++      GL G+F    L  LI  +          +  K++S
Sbjct: 302 LFSEAVNLHPVAIITAILLFGGLWGLWGVFFAIPLATLIKAVINAWPRQADYSPGKLAS 360


>gi|170733033|ref|YP_001764980.1| hypothetical protein Bcenmc03_1686 [Burkholderia cenocepacia MC0-3]
 gi|169816275|gb|ACA90858.1| protein of unknown function UPF0118 [Burkholderia cenocepacia
           MC0-3]
          Length = 390

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/349 (20%), Positives = 140/349 (40%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    +    +  +I  SLY L+ F   ++ A  I   +WP+      +         ++
Sbjct: 24  LVRVILGIVTLSLLICGSLYILRPFLLALVWAATIVVATWPLLHEVQRRLRCRRGPAVIV 83

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPGGMWASELWT 124
             +++M + ++P+           +E+++ +    N    P P WL+ +P     +    
Sbjct: 84  MLLALMVVIVLPIYGAVSTLAAHAEEIMTLLKGLPNYTLPPPPGWLAKLPLAGTHATREW 143

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + LS      +L+           +  +            L ++  +I     +  G ++
Sbjct: 144 QTLSDAGPGGVLAT---LQPYASRLASWLLVRASAIGVLVLHLLLTVIICGILFAKGEAV 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  + + + PA    + R+V   IR+  LG+ + A+ +  + G   W A VP    L
Sbjct: 201 GLTVTRVAQCVAPANGAAMVRLVEHAIRAVALGVMVTALAQSALGGLGLWGASVPYAGVL 260

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             I  I  +   G  +   A   +L +      A  LF W      + D +LRP L+   
Sbjct: 261 TAILFIFCLAQLGPLLPLLACVTWLFVHDAKLAAILLFGWSLGVTAL-DNSLRPILIRRS 319

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I LP +    G++GG+   G++GLFIGPV++A+   + +  +   +  +
Sbjct: 320 IALPMVLILAGVLGGLIAFGMIGLFIGPVMLAVTYALMEAWLDTQEAAR 368


>gi|160882038|ref|YP_001561006.1| hypothetical protein Cphy_3920 [Clostridium phytofermentans ISDg]
 gi|160430704|gb|ABX44267.1| protein of unknown function UPF0118 [Clostridium phytofermentans
           ISDg]
          Length = 434

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 1/277 (0%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
             ++       + ELV       + G      + +    +    +  K  +    L    
Sbjct: 155 FTYIIPQVTNSITELVLNSDALYKKGETWLNDIGEKFPILDTGYIQDKIEASLPQLL-SF 213

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T    N +  I   +       ++  LSI   I  L+       + ++ + +       
Sbjct: 214 GTDFVKNVLPKILNVSISIAKTAINILLSIAISIYMLYDKRMLSKNAARIIYAFIPKKKA 273

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             +  ++R    +     +G TI +   G++      +  +P  + + VI  +  MIP  
Sbjct: 274 DSFLDVTRECGSIFTGFIVGKTIDSTIIGILCFILMSILRLPYAILISVIVGVTNMIPYF 333

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P       I L +  +   A    +            L P ++G    L  L   FG+ 
Sbjct: 334 GPFIGAVPGILLFLFISPIQALVFAIMILGLQQFDGWILGPKILGDSTGLTPLWVIFGIT 393

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G    G++G+F+G   +A+IA +    I    + + 
Sbjct: 394 VGGAYGGVIGMFLGVPFVAVIAYLAGMFITGRLKKRN 430


>gi|228935904|ref|ZP_04098714.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229186851|ref|ZP_04314006.1| Sporulation integral membrane protein YtvI [Bacillus cereus BGSC
           6E1]
 gi|228596588|gb|EEK54253.1| Sporulation integral membrane protein YtvI [Bacillus cereus BGSC
           6E1]
 gi|228823672|gb|EEM69494.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 365

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLVFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|88704180|ref|ZP_01101894.1| permease PerM [Congregibacter litoralis KT71]
 gi|88701231|gb|EAQ98336.1| permease PerM [Congregibacter litoralis KT71]
          Length = 362

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 104/324 (32%), Gaps = 12/324 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +    AP+L+++++ +    + +    +          IA  + M  F   LL L     
Sbjct: 35  IGDILAPLLASIVLAYLVQGVVNLLC-RLGLPPWLGFFIAFTAFMGAFFAVLLGLLPLVW 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +   L++++      G  +   L      +++     + L+  Q         + T  +
Sbjct: 94  RQSIGLITEIPRMIDQGRDLLEVLPGRYPDVFSQTQIDQLLAGVQGEIAGLGQKVVTVTL 153

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             IP F        +   + ++ + I +FF  +D   I++ + S           +I   
Sbjct: 154 ARIPGF--------MTLLVYVVLVPIIVFFLLKDRTQITRWVTSFLPER-RPLLSRIWAE 204

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +     +   G  +  I  G     ++   G+     LG++  +  +IP       T   
Sbjct: 205 MNVQFSNYARGKMVEIIIVGAASYVSFTGLGLRYAALLGLLVGLSVIIPYIGAFLITVPV 264

Query: 267 --IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + L   G       +     +   +    L P L    + L  +     ++      G
Sbjct: 265 AAVALFQWGLTPEFYWVLAVYLVIQILDGNVLVPLLFSEAVNLHPVAIIVAVLFFGGIWG 324

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           L G+F    L  LI  +       
Sbjct: 325 LWGVFFAIPLATLIKAVINAWPKR 348


>gi|222098058|ref|YP_002532115.1| hypothetical protein BCQ_4400 [Bacillus cereus Q1]
 gi|228987844|ref|ZP_04147953.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229141322|ref|ZP_04269860.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST26]
 gi|229198746|ref|ZP_04325443.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1293]
 gi|221242116|gb|ACM14826.1| membrane protein, putative [Bacillus cereus Q1]
 gi|228584729|gb|EEK42850.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1293]
 gi|228642103|gb|EEK98396.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST26]
 gi|228771892|gb|EEM20349.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 365

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLVFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|15806207|ref|NP_294912.1| permease [Deinococcus radiodurans R1]
 gi|6458923|gb|AAF10755.1|AE001967_8 permease, putative [Deinococcus radiodurans R1]
          Length = 444

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 91/304 (29%), Gaps = 11/304 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P+                 +  + V+   ++  L      + +  +L S +  +     
Sbjct: 63  NPVARWLERWM--PRPAAGALTVLLVVLALVLLGLVAVPPLVSQGSKLTSSLPTSIPELE 120

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                L D               S      +        +      +        F+   
Sbjct: 121 AQINALIDRYPA---------INSVLTEASVHRLIQQAGSFAANAAKGLPNIVSTFVGGV 171

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
              + M++ + F   +   +   +             +    + K +        ++ + 
Sbjct: 172 FMGLVMLVMVVFVLSNPVPLVNGVLGAVPPRHRLPAARALAQILKQLGGWGRATVLVMLV 231

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G        L  V + +  G++ A+  ++P   PI  T  S+      +      + L+
Sbjct: 232 TGSCTALGLMLLKVDNWLIFGILAALGELVPNIGPIVATIPSVLFAAADDPQKGLYVALF 291

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   +    L PFL+GG  KL  L    G++      G++G F+    + +I  I++E
Sbjct: 292 VLVFQQVSGFVLGPFLLGGAGKLHPLSVTVGVLLFGSVFGIVGAFLTVPFLIIIKAIYQE 351

Query: 345 SIMA 348
             + 
Sbjct: 352 FYLQ 355


>gi|293399736|ref|ZP_06643882.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306136|gb|EFE47379.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 390

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 108/344 (31%), Gaps = 8/344 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCLF 74
           ++ +L  +     P +  +++ F        F+ K      +      A+++ + ++ + 
Sbjct: 37  VMGTLQMIINLLKPFIYGIMMAFVFNLPMKYFMKKLPASLGKGKRAVAALLSLIIIIGVI 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                 +    +  +  L + +    +        +          E   K +       
Sbjct: 97  TFIFWIVMPQVIHSVTTLANALPGYLEEVQK---NIQTAIENKQIPEEVLKQIETYAMDI 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  NG+  +   AS F     +  ++++  +       R      + L +    
Sbjct: 154 QKMAVNIVKNGLPHLIDMASGFASSIANIFMALVIAVYLTISKNRLITQAKEFLYAFTSK 213

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               Y  K++ +      +   G  + AI  G++      +   P    L VI     +I
Sbjct: 214 RVNEYLLKVAHLTNVTFANFVTGQLVEAIIIGILCYIGCLILQFPYAPILSVIIGCTNII 273

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I    +S  L+   +        L+G          + P +VG  + L  L   F
Sbjct: 274 PIFGAIFGVGLSALLVAFVDPLQGIFFILFGICLQQFESNLIYPRVVGNTVGLSGLWVLF 333

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +  G    G  G+ +G  + ++I  + +E +      K +   
Sbjct: 334 AITVGGGFFGFAGMLLGLPIFSIIYALLREEMHRRSSLKRQRDE 377


>gi|324008590|gb|EGB77809.1| permease, PerM family [Escherichia coli MS 57-2]
          Length = 353

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 106/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ATSIVLILFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + +S  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRSRMLTMGDSVVKISLASLVGLLT--------IAVYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDG 348


>gi|311743144|ref|ZP_07716952.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311313824|gb|EFQ83733.1| integral membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 367

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 102/324 (31%), Gaps = 13/324 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F      P+  AL+    +         +         ++ TV ++   +  L+ +    
Sbjct: 37  FFSEITVPIAVALLGTALTVGAVDWL-DRLGLPRLLATLVVTVVMITGLVGLLVLIGQQL 95

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +  EL   VV          R           +                 +  + +  
Sbjct: 96  STQFDELRVSVVDGVGQIEDWAR-----------TGPLGLSDDQISDYVTRVQDAIASTD 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            D     A+  G+    +       + A  FF  +G  I   L +L              
Sbjct: 145 TDTAIGQATSLGVTLTHFVTGFFIALFAAIFFLYEGDRIWAWLVTLFPRSARGRINSSGH 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
              + + S      ++A  + + +     L GVP  +A+GV+  + A +P     +S   
Sbjct: 205 RAWESLTSFVRATMVVAFIDAVGIALVALLLGVPLALAIGVLVFLGAFVPIVGAFLSGMV 264

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             +  L+    + A  + L       I    L+PF++G  + +  L     +V G+   G
Sbjct: 265 AVLVALVAQGPWTALFMLLGVIAVQQIESNVLQPFVMGRLVAVHPLAIILAIVAGITVAG 324

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           ++G  +   + A++  + K     
Sbjct: 325 IVGALVAVPIAAMLNGVVKHLAEE 348


>gi|228917234|ref|ZP_04080791.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929643|ref|ZP_04092661.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228948321|ref|ZP_04110604.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124162|ref|ZP_04253354.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           95/8201]
 gi|228659464|gb|EEL15112.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           95/8201]
 gi|228811308|gb|EEM57646.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830030|gb|EEM75649.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842435|gb|EEM87526.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 365

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLVFVIVATVAGFYALLYVSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|258404397|ref|YP_003197139.1| hypothetical protein Dret_0259 [Desulfohalobium retbaense DSM 5692]
 gi|257796624|gb|ACV67561.1| protein of unknown function UPF0118 [Desulfohalobium retbaense DSM
           5692]
          Length = 356

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 108/358 (30%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ ++  +I+   ++ +  +    APVL+++++ +    +     +++      
Sbjct: 9   RRHFSDPQVVILALILISCILLIMTVGDLIAPVLASVVLAYLLEGLVRFLENRRV-PRML 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  +      +L L      ++ +   ++      G      L +        +
Sbjct: 68  AVCLVFLIFVFFLFFLVLGLLPLLSQQIVQFFQELPSMLAAGQRELMRLPERYPKFITED 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  +S          T     +   +        +  + +I + I +FFF +D 
Sbjct: 128 QILDVVAALKSQL--------TGLGQRVLSISLASVRSLFNLLIYMILVPIMVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   +       +    ++I   V + I +   G     +         + +  +   
Sbjct: 180 SKIINYIKMFMPKDY-TLTRRIWHDVDRQIGNFVRGKVWEILIVWGAAYGLFLIIDLNYA 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L  +  I  ++P       T     +     G         +   I   +    L P 
Sbjct: 239 ILLSFLVGISVIVPYVGATVMTLPVALVAYFQWGWGQEFIYAIIGYTILQILDGNLLVPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+   + L  +     ++      G  G+F    L  L+  I      A +       
Sbjct: 299 LLSEVVNLHPVAIIVAILFFGGIWGFWGVFFAIPLATLVQSIINAWPRAGQPQPPAPK 356


>gi|15894954|ref|NP_348303.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15024639|gb|AAK79643.1|AE007677_5 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325509091|gb|ADZ20727.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 341

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 105/321 (32%), Gaps = 13/321 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +  L      +L A +I +T  P +   + K   +    A +   S+    I+ + FL  
Sbjct: 28  VKILSEIIYIILVAFLIAYTVKPFHKCLVKKGLSARKSAAFL-LGSLTLFCILFMFFLVP 86

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               E   +         +   + + L     GM          S   +           
Sbjct: 87  SIFKETLNINMTKNEIQYYIDFLNKKLKPTLQGMAGETFIVTIYSKFNNELRE------- 139

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                I      F M      + I  + I  ++F  DG +I  ++  +    +    KKI
Sbjct: 140 -----IVSKLFNFVMSIGKNIVDIAIVPIISYYFLADGENIRNKILVIFPLSYRKLVKKI 194

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V  V+    +   I+    GL+      +  V   + L ++  +  +IP   PI   
Sbjct: 195 MCDVDNVLSKYNVTQIILCTFVGLLTFIILIVFKVDYPIILSIVNGLFNIIPYFGPIFGA 254

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I +    +        +   I   I    + P + G  I +  L     L+ G +  
Sbjct: 255 IPAIIIAFLHSTKVGIYTTVCLYIVQIIEGNLIAPKITGESIDMHPLIVIILLIAGEKIA 314

Query: 324 GLLGLFIGPVLMALIAVIWKE 344
           G  G+ +   +  +I VI+++
Sbjct: 315 GFWGMILAIPVGVIIKVIYED 335


>gi|319407202|emb|CBI80841.1| permease protein [Bartonella sp. 1-1C]
          Length = 385

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 118/351 (33%), Gaps = 11/351 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       +   +V ++       P ++ +++ +   PI   F  K      F  ++ T
Sbjct: 29  KQIFFWLGTLIFFIVFMFIFGAILFPFIAGIVLAYFLNPIVQIFE-KIGIHRVFGTILIT 87

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSK-VVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           + ++ +F+V L+ L      ++++ +S  + +            +      +      + 
Sbjct: 88  LFIIIIFVVSLIILIPIISGQIQQFISNGLPIYVNRIQTFFVEHNFSWVRRYFDSDPNQL 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            ++ + L   S     ++ I  +     + G   ++     +   +  F+   D   + +
Sbjct: 148 HTNIKMLLGQS-----SDFITSLLNSLLKSGKSIVNIISLFVVTPVVTFYILLDWPHMVE 202

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +DS          + +   + + +     G   + +           + G+   + +G+
Sbjct: 203 VVDSWIPRSHLTTVRSLFHEMDRAVAGFVRGQGTVCLILAGYYAIGLTITGLNFALLIGM 262

Query: 247 ITAIMAMIPGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              +++ IP    +        V+       N      + +   I  FI    L+P LVG
Sbjct: 263 FVGLISFIPYIGTMIGFILSIGVAWVQFYPDNWGWIIIVMIVFFIGQFIEGYILQPKLVG 322

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + L  +   F L       G  G+ +     A+I V+ +  +     ++
Sbjct: 323 SSVGLHPVWLMFALFAFGSLFGFTGMLVAVPAAAIIGVLVRFLLHIYLNSQ 373


>gi|238020124|ref|ZP_04600550.1| hypothetical protein VEIDISOL_02008 [Veillonella dispar ATCC 17748]
 gi|237863648|gb|EEP64938.1| hypothetical protein VEIDISOL_02008 [Veillonella dispar ATCC 17748]
          Length = 373

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 108/334 (32%), Gaps = 13/334 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVSVMCLFIVPLLF 80
           F P++    I F    +   +                      V++ V++  +       
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKSKTGWKDKIRRPLSLVLSFVTISAIVYFIARM 100

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                +  M  +V+              W+      +  +   T   +      +     
Sbjct: 101 AIPQLIHSMSIIVASSPQLYTDFQT---WMQHFTETIPMASNQTLMDTLSGESVVKYTRE 157

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T G  ++           L+  L +IF I  L    R      + L +     +    
Sbjct: 158 WGTKGGTYLVNAMGTALSWTLNIGLGLIFAIYMLLDKERLMMQGKRILKAYASDEWVNRV 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             ++R+  +   + F+G  I A+  G+++G + W   +     +  +  + A++P     
Sbjct: 218 SYVTRVAVQTFSNFFVGQFIDALILGIMVGISLWAFNIEYATTIACVIGLTALVPLLGIY 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +   +L+  +  +A    +   +   I    + P +VG  + LP L  F  ++ G 
Sbjct: 278 VGGVIGAVILLTVSPMDALIYVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGG 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             MG+ G+ IG  L+A    +    +     + E
Sbjct: 338 SLMGVTGMLIGVPLVATCYKLLMTDVNDRLASNE 371


>gi|107101057|ref|ZP_01364975.1| hypothetical protein PaerPA_01002087 [Pseudomonas aeruginosa PACS2]
 gi|218892418|ref|YP_002441285.1| putative permease [Pseudomonas aeruginosa LESB58]
 gi|254239971|ref|ZP_04933293.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|126193349|gb|EAZ57412.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218772644|emb|CAW28429.1| putative permease [Pseudomonas aeruginosa LESB58]
          Length = 355

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 6/334 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            +     ++ L+  +     +   P P W++ +P        W   +             
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWDSIDQQGVAFFYVLKP 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                 +++   +++ G   L+  LS+I +     FFYRDG  +   +    E L     
Sbjct: 139 YVGEVGNWLLARSAKIGGGILELVLSLILIF----FFYRDGPRLESIVHRALERLIGNRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P+
Sbjct: 195 EHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLL-MVPPL 253

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 254 VWGPATAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGGL 313

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              G +GLF+GP+L+A+   +  + I +      
Sbjct: 314 LAFGFMGLFLGPILLAVAYNLLSDWIASTPRTPP 347


>gi|229093693|ref|ZP_04224792.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-42]
 gi|228689578|gb|EEL43386.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-42]
          Length = 365

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   PI +    K +       +++ +
Sbjct: 4   RLVFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPIVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|327459398|gb|EGF05744.1| permease [Streptococcus sanguinis SK1]
          Length = 365

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 108/330 (32%), Gaps = 7/330 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A +  + + ++
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDLLDKCRVPQKLQRGLALILEVLILVL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + G    GL+G+     + A+I  + +E +
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFV 352


>gi|254361725|ref|ZP_04977861.1| hypothetical membrane protein [Mannheimia haemolytica PHL213]
 gi|261492038|ref|ZP_05988613.1| putative permease [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495015|ref|ZP_05991483.1| putative permease [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|153093251|gb|EDN74257.1| hypothetical membrane protein [Mannheimia haemolytica PHL213]
 gi|261309331|gb|EEY10566.1| putative permease [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261312321|gb|EEY13449.1| putative permease [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 358

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 110/352 (31%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+   +PQ ++ + I+ I    +YF      P+L AL+  +          SK +   T 
Sbjct: 10  RKKFTDPQIVVLFSILLIGFGIIYFFSDLLMPLLVALVFAYLLEWPIRFLSSKLKLPRTL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++     + L     + L      +    +  +           + L +    +    
Sbjct: 70  SVILVLGGFIALLSFLGVVLLPSLWNQAVTFIQDLPSMFNLLNAWLQALPEHYPELVDYA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  +S  +     L T  I+ I               +    + + +FF  +D 
Sbjct: 130 TLDSIVNTAKSNILSMGESLLTLSINSIISLV--------GLGIYTFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    +          ++   + + I +   G  +  +  G+V    +    +   
Sbjct: 182 IVLMRSFSKVLPQ-NRRLATRVWFEMQQQIANYIRGKFLEILIVGVVTYIIFLFFDLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   I  ++P    +  +   +   L   G   +   L L   I   +    L PF
Sbjct: 241 LLLSVAVGISVLVPYIGAVLVSIPVMLIALFQFGLSPDFYYLMLAFIISQLLDGNLLVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     ++      G  G+F    L  L+  + +    A  +
Sbjct: 301 LFSEAVNLHPLTIIIAVLIFGGLWGFWGVFFAIPLATLVKAVLQALPSAQSD 352


>gi|94310649|ref|YP_583859.1| hypothetical protein Rmet_1709 [Cupriavidus metallidurans CH34]
 gi|93354501|gb|ABF08590.1| hypothetical protein, putative membrane protein (permease)
           [Cupriavidus metallidurans CH34]
          Length = 388

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 132/342 (38%), Gaps = 3/342 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ + +      K F + +  ++I+  T +P+ +    K  +     A +    V
Sbjct: 20  IRFGLILLLAISCFEIFKPFISLMAWSVILAITLYPLQTYLRGKIFDGEGRTATLIVFLV 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +C+ +VP   L    +  ++  +      N    P    ++  P        +    S  
Sbjct: 80  ICIILVPSCLLGIALIDSVEHALEIARSGNIRIPPPSESVAAWPFVGKQLYGFWHLASTD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +                +   A   G+  L +  +++   I + +      S  Q    
Sbjct: 140 FASLAEKLAPQIKVVALALLGTARGVGVGLLIFVAALMIAGIFMAYGELGTRSAIQIASR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +           ++ +    +R+   G+  IA  + L++G A+ + GVP    L +   +
Sbjct: 200 ISGPERGPR---LTVLCTATVRAVAQGVVGIAFIQMLLIGVAFVMKGVPGAGLLALAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++   A +    V I+++    +     +F        + D  L+P L+G  + +P  
Sbjct: 257 LGIMQLPATLITIPVIIFVIATEGVSGMNIVFAVYVFIAGLADNVLKPMLLGRGVDVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               G +GG+ + G++GLF+GPV++A+   ++ + +   ++ 
Sbjct: 317 VVLIGALGGMVSGGVIGLFVGPVVLAVGYQLFWQWVEDTQQQ 358


>gi|149177528|ref|ZP_01856131.1| predicted permease [Planctomyces maris DSM 8797]
 gi|148843678|gb|EDL58038.1| predicted permease [Planctomyces maris DSM 8797]
          Length = 400

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 114/335 (34%), Gaps = 13/335 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +    ++ +LYF +  F P+  A+++ F   P+            +  A I  +
Sbjct: 59  RISLAILATLGVVHALYFARAIFIPIALAIVLFFLLAPLVRFLTRVCPIPESLSAAIVVL 118

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S+  +  +   FL       +    +    A Q    +   +  I               
Sbjct: 119 SLTFMIGLASYFLASPVSDWLSSAPATFRKAEQKLRFIIDPVDKIDQASSQVSDIAGGKE 178

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +K+  +    T+                +++   +   ++ ++     G      +
Sbjct: 179 KDDVVKVSIQQPPVTSY----------LLSSTVNFLAGVTITVVLVYLLLAMGHRTLNSV 228

Query: 189 DSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             L   L        + R V   I    + +T I IG G+++G+  WL G+P  + LG++
Sbjct: 229 VELLPTLDDKRGLVTMIRNVENGISRYLVTITAINIGLGIIIGTVMWLLGLPDPILLGIM 288

Query: 248 TAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            A +  IP        AV+  +  +       A    L   +   +      P ++G  +
Sbjct: 289 AATLNFIPFVGAFIGAAVTFLIGIVYLNTPAEAMLGPLMYIVINTLEGNVFTPMILGHSM 348

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           KL     F  ++      G+ G+ +   L+ ++ +
Sbjct: 349 KLNPALVFVCIIFWGWAWGVGGILLAVPLIGMVKI 383


>gi|326443144|ref|ZP_08217878.1| putative integral membrane protein [Streptomyces clavuligerus ATCC
           27064]
          Length = 444

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 97/312 (31%), Gaps = 18/312 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   L  L  +            SAL+I     P  +  + +          +  
Sbjct: 77  WRLLVLAGTLWVLMRVISAVQLVVLAFASALLITALLQPTVARLL-RIGLPRGLATAVTA 135

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++   +  +   F+ +  M  +  L  +V    Q               +WA E      
Sbjct: 136 IAGFAVMALVGWFVVWQVMENLDTLSDRVREGIQELR------------LWALEGPFHVS 183

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    + +    +  + I     +     +++    +  + +  F   DG  I Q 
Sbjct: 184 EGQINDLADNLSDTIGSNTEEITSAGLQGVTALMEFLAGALLAMFSTLFLLHDGPRIWQW 243

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                   + +   G  ++A+ + + +G   W   VP  V L V 
Sbjct: 244 TLKLVPAQARPGVASAGPRAWATLTAYVRGTVLVALIDAIFIGLGIWFLDVPMAVPLAVF 303

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A +P     +S     +  L+   +F A  + +       I    L+PF++G  ++
Sbjct: 304 VFLFAFVPLVGAVLSGALAVVVALVTQGVFTALMVLIVVLAVQQIEGHVLQPFILGRAVR 363

Query: 307 LPFLPTFFGLVG 318
           +  L     +  
Sbjct: 364 VHPLAVVLSVAV 375


>gi|325663754|ref|ZP_08152158.1| hypothetical protein HMPREF0490_02899 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470247|gb|EGC73480.1| hypothetical protein HMPREF0490_02899 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 397

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 114/350 (32%), Gaps = 14/350 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-------------EESSTFLAVI 65
           I+L +++FL     P +    I F      +                   +       V+
Sbjct: 30  IVLDAVHFLFSIAFPFILGGAIAFILNVPMNFMEKVFFSNQWAKNNKIVQKIKKPCSLVL 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWT 124
           + + V+ +  V +  +F      +  L   + +           L  +  G +   E   
Sbjct: 90  SIMLVLGIIFVVIFVVFPQLGKTILMLGESIQVFIPKLELWAEDLFQNNTGIIEWIETME 149

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I        + ++     A         + +S +F    L    +    I
Sbjct: 150 FDWDKMIQGGIDFLRNGAGSVLNTTFAAAKSIVSGLTTFFISAVFACYILLQKKKLTVQI 209

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +       +    I  +  +   +   G  + A+  G +   +  +  +P  + +
Sbjct: 210 QKVLYAFLPEKKVSTVLDICSLTYRTFSNFLTGQCMEAVILGTMFFISMSILRMPYALLI 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+ A  A+IP         +  +L++  N   A    +   +   +    + P +VGG 
Sbjct: 270 GVLIAFTALIPIFGAFIGCVIGTFLILMVNPMQAIGFIVLFLVLQQVEGNLIYPHVVGGS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + LP +     +  G   MGL+G+ I   ++++I  +++  +      K 
Sbjct: 330 VGLPSMWVLVAVSLGGSLMGLVGMLIFIPMVSVIYTLFRGYVYERLRKKN 379


>gi|227486234|ref|ZP_03916550.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235865|gb|EEI85880.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 405

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/376 (13%), Positives = 124/376 (32%), Gaps = 23/376 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-LYFLKGF----------FAPVLSALIIGFTSWPIYS 49
           MRE  +  + +++ ++  I+L   LY++               P +    + F      +
Sbjct: 1   MRELDVKSKNLLKVVVCGILLYFGLYYIGHVADAVGKLYLVIQPFILGGALAFIISIPMN 60

Query: 50  SFI----------SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
            F             K+  ST   +++ + V+   ++ +  L    +  +     +    
Sbjct: 61  FFESEFAHFDKTGKHKKIISTCSLLLSWILVIASLVILINILVPSIVKVVYTFSIRWPDF 120

Query: 100 NQHGIPVPRW--LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
                 + +   +++     + +  +     + ++         K +             
Sbjct: 121 VDEIYRLLKKYPITEPFANKFQNTFYGVGWYNVRNAVYTFLQGRKGDIFSTAASLMGSIS 180

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              +      +F I  L +      +  + L +L       Y  K+  +     +     
Sbjct: 181 SGVIGVFTMFVFSIFILIYKRMLKINGIRILYALMSEERADYINKVFSLSYNTFKDYLFS 240

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
             I  I   ++     ++  +P+   + ++  +  +IP   PI  TA S  L+   +   
Sbjct: 241 RVIAVICLSILTFVGMFVMRLPNAAMISIVVGLSDLIPIFGPIFGTAFSTILIFIESPVK 300

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           +     +  I   I +  + P + G  I LP +     +  G    G+ G+ +   ++++
Sbjct: 301 SLIFLAYSLIIQQIQENVIYPAIAGNKIGLPAVWVMASVTIGGSLFGVWGMLVSIPVVSV 360

Query: 338 IAVIWKESIMAIKENK 353
           I  +  E I  + E K
Sbjct: 361 IYTLSHEKIHHMLEEK 376


>gi|312883995|ref|ZP_07743712.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368453|gb|EFP95988.1| permease [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 361

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 136/350 (38%), Gaps = 2/350 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++         ++ +   ++ A II    +PI+        +     ++++ + +
Sbjct: 13  VLIIALLLAGFACFLLVEPYINSIVMAFIISLLMFPIHERVERYLPKHRNISSLLSCIIL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSH 129
             + + PLLF+F   + +       V      G I        +   +     +    S 
Sbjct: 73  TFIIVFPLLFVFAAIIQQGSTFSQSVYQWVTTGGIQTAFEHPWVVKSLAIINNYLPFDSI 132

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                        T+    +   +++      ++ ++   M+  LFF  RD   I   + 
Sbjct: 133 APQEIAQKVAQFSTSFGTRLVGLSAKILGDATNFLMNFFLMLFVLFFLLRDHEKIISAIR 192

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +   L  +   K+   V +V +S  +G  + AI +GL  G    +AG P+     ++  
Sbjct: 193 HILP-LSRSQEDKLLDEVEQVAKSAVMGSFLTAIAQGLAGGIGMAIAGFPALFWGTMMGF 251

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +   G  + +   S+YLL+ G    A  L  +    +  +D  LRPFL+ G   +  
Sbjct: 252 ASFIPVIGTALIWIPASLYLLLTGETGLAIFLAGFSVFVVGSIDNLLRPFLMQGNGGMNT 311

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L  FF L+GG+   GL+GL  GP++ A+  V++       +   ++   +
Sbjct: 312 LMIFFSLLGGLHLFGLIGLIYGPIIFAVTVVLFHIYEEEFQGFLDQQDKS 361


>gi|23099465|ref|NP_692931.1| hypothetical protein OB2010 [Oceanobacillus iheyensis HTE831]
 gi|22777694|dbj|BAC13966.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 355

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 116/329 (35%), Gaps = 12/329 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F+     P + A +I +   P+      +         ++  +       + +   +
Sbjct: 37  FFTFVGKLLIPFIIATLITYLLHPVIEKLH-RLHIHRGISILLIYLIFFGGVGLSIYLGY 95

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++ E+   +         +   +            +T  L      ++       
Sbjct: 96  PVIVQQITEISKNIPEFFSLYEQLILRV----------YEYTSFLPEGVHDRMDDMIASI 145

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + ID +           +D  + I  + + +F+F +D   I   L       +    K+
Sbjct: 146 ESRIDQLLSNLVGGFDGLMDKIIIITVIPVLVFYFLKDFKQILSFLGKFIPSQYRDDAKR 205

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + + K +     G  I+++  G+     + +  +P  + L +I AI+ +IP   PI  
Sbjct: 206 LLKELDKGLGGYIRGQLIVSLFVGIASFLLFLIMKIPYGLLLAIILAIVNIIPYFGPIIG 265

Query: 263 -TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V       G+      + L   I   I    L P+++G  I++  +   F L+ G +
Sbjct: 266 AVPVITIAYTAGDSGKVLLVILALFILQIIESNLLSPYIMGKTIRIHPVAIIFALLFGSQ 325

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             G+LG+ +   ++ +  VI ++ I   +
Sbjct: 326 LGGILGMILAVPILMIAKVIVQQFIEFRR 354


>gi|157145970|ref|YP_001453289.1| putative inner membrane protein [Citrobacter koseri ATCC BAA-895]
 gi|157083175|gb|ABV12853.1| hypothetical protein CKO_01723 [Citrobacter koseri ATCC BAA-895]
          Length = 370

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/358 (18%), Positives = 134/358 (37%), Gaps = 6/358 (1%)

Query: 1   MRETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            
Sbjct: 4   LRQPRDIAQVLLSVLFLAIMIVACLWIVRPFVLGFAWAGTIVIATWPVLLRLQKILWGRR 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   ++ T+ ++ LFI+P+  L    +     L+  V   +     +    S    G   
Sbjct: 64  SLAVLVMTLLLVLLFIIPIALLVNSIVDGSGPLIHAVTAGDMTLPDLAWLNSIPLIGAKL 123

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   L    +  +            +    A+  G     + +    M++     Y 
Sbjct: 124 YAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCGLMLLFSALLYW 179

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP
Sbjct: 180 RGEQVALGIRHFASRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAILGGIGLAISGVP 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP 
Sbjct: 240 YATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSCVVGTL-DNVIRPV 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +        
Sbjct: 299 LIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFSAWVHEVPAPGNDPD 356


>gi|239996076|ref|ZP_04716600.1| putative permease [Alteromonas macleodii ATCC 27126]
          Length = 357

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/358 (15%), Positives = 105/358 (29%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P   M  +++ +    L    G   PVL A +I +         ++    S T 
Sbjct: 10  RRKFSDPDAAMLLILILLTTAVLLLWGGLIMPVLVAAVIAYLLDWPVCRLVN-VGVSRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V+  +  + + I+ L+ L      +   L+ +  L  Q        L D         
Sbjct: 69  ACVVVMLGFITITILTLIGLVPIISKQSVNLIQETPLIWQKAQEWILTLPDKYPDYVQVY 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +       +     L +     I   A           + +I + + +FF  +D 
Sbjct: 129 QIHQMMEGLNDKLVEVGETLISASFSNIANLA--------ALLVYVILVPLMVFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 +  L          ++   +   I +   G  I  I  G V    + L  +   
Sbjct: 181 LFFLDSISRLLPKE-RRLITQVGHEMNSQIANYIRGKVIEIIIVGAVSCVTFVLMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPF 299
           + LGV+     +IP       T     + +     +     L +   I   +    L P 
Sbjct: 240 ILLGVLVGFSVLIPYIGAAVVTIPVAVVAMFQWGISPEFWYLMIAYGIIQALDGNLLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    + L  L     ++      G  G+F    L  L+  +            E+  
Sbjct: 300 LFSEAVSLHPLYIIVAVLVFGGLWGFWGVFFAIPLATLVKAVITAWSSNPVIVPEEAK 357


>gi|238025108|ref|YP_002909340.1| hypothetical protein bglu_2g17670 [Burkholderia glumae BGR1]
 gi|237879773|gb|ACR32105.1| Hypothetical protein bglu_2g17670 [Burkholderia glumae BGR1]
          Length = 356

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 169/341 (49%), Gaps = 6/341 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIAT 67
             +  +   ++ ++L+ ++ F   +  A +I    WP       I       T +A++ T
Sbjct: 19  IALGVLYTVLVALALWIIRAFLPAIAWAGVIAIALWPALRRIDAIRWLSGRRTLVAILLT 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V  L + P+         ++ ++ + V  A  +GIP+P  +  +P G      W +  
Sbjct: 79  SAVGLLLVAPVAIAVAQAAGQIHDVFAWVHDARANGIPLPDAVYHLPFGSRQVAAWWQA- 137

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +  + +   +K    +    +   FG   L   +   FM++ LF  +R G  +S+ 
Sbjct: 138 --NLAQPLHAPAGVKGMNGEAFVSYGKAFGSHVLHAAVLFGFMLVTLFVIFRAGPRMSES 195

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L    +  F A    +++ +   +  T  G+ ++ +GEG +LG AY +AGV     LG++
Sbjct: 196 LMRGVQRAFGANGASLTQRMVSAVYGTVTGLVVVGLGEGALLGVAYAVAGVSHAALLGLV 255

Query: 248 TAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           TA+ AM+P  AP+ F   +++L  +KG    A  L ++GA+ +F+ +  +RP L+GG  +
Sbjct: 256 TAVAAMLPFCAPVVFCGAALWLFLVKGAAAWAIGLAVFGAVVVFVAEHFVRPVLIGGSAR 315

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           LPFL   FG++GG  T GLLGLFIGP LM ++ V+W E + 
Sbjct: 316 LPFLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWSEWVE 356


>gi|229494105|ref|ZP_04387868.1| hypothetical protein RHOER0001_1153 [Rhodococcus erythropolis
           SK121]
 gi|229318467|gb|EEN84325.1| hypothetical protein RHOER0001_1153 [Rhodococcus erythropolis
           SK121]
          Length = 385

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 97/320 (30%), Gaps = 16/320 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                 + + ++  L   +G    ++ AL +     P+      +          +  + 
Sbjct: 58  AAAGVAVTYAVIEVLLAARGMLILIVVALFLAVGIEPMIVWLERR-HFRRWIAVTVVLLG 116

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +  + L+      + + ++  S       H       +SD+       E  T  L  
Sbjct: 117 IAVMLALFLVAAITPLVEQGRQFASHAPELLTHIRDRYPIVSDLDEKYHLEEHLTTQLD- 175

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                              +       G            + +   +F  D   I   L 
Sbjct: 176 --------------GSGSALATGLLGAGRAVFSAVADAGIVAVLTTYFLIDYPRIRTNLY 221

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  H        I   +   +    LG  +I++   +   +   +  VP  + L ++ A
Sbjct: 222 RLVPHSRRPRAIAIGDQILAGVGGYVLGNVLISVITAVCTFAWLLIFDVPYPLILALLVA 281

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP         V   + +  ++  A     +      + D  L P ++G  + +P 
Sbjct: 282 LLDLIPIVGSTIAGVVVALVSLTVSVPTALATVAFFIALRLLEDYLLVPKIIGKTVAVPA 341

Query: 310 LPTFFGLVGGVRTMGLLGLF 329
           L T   ++ G   +G++G  
Sbjct: 342 LVTVVAVLLGGALLGIVGAL 361


>gi|327472814|gb|EGF18241.1| permease [Streptococcus sanguinis SK408]
          Length = 365

 Score =  120 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/330 (16%), Positives = 107/330 (32%), Gaps = 7/330 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESSTFLAVIATVSVMCLFIV 76
           I   L  L   F+P++   ++ F              K          +A V  + +  +
Sbjct: 27  IWSGLQSLTSVFSPIILGGVLAFIFNVPMKKLEDFLDKCLVPQKLQRGLALVLEVLILAL 86

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +   V+++        P         G + +S+L         S  + 
Sbjct: 87  IMTGIVSIVVPTLTTAVNQLSATIGKVAPQVAKWLQQSGLLSSSQLKDLTKQLQNSDIVN 146

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               L  +    I      F  + +   L   F+             +      L     
Sbjct: 147 RAISLLGSLTGNISAIFGNFFSVIMSIFLMFAFLSSKEHLQTITSRLLQV----LLPEKA 202

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +  ++ +      +G  I A+  G+++  AY L G+P     GV+  +++ IP 
Sbjct: 203 VKRLSYVGSVIVETYDKFLMGQMIEAVIVGILVFIAYSLTGLPYAALTGVLAGVLSFIPY 262

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P S  A+    +   + + A            I    + P +VG  + LP L T    
Sbjct: 263 IGPFSACALGAIFIFTDSPWKALLSIAVFQGVQLIEGNVIYPRVVGQSVGLPTLFTLAAA 322

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + G    GL+G+     + A+I  + +E +
Sbjct: 323 LIGGNLFGLVGMIFFTPIFAVIYRLVREFV 352


>gi|198282946|ref|YP_002219267.1| hypothetical protein Lferr_0810 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666280|ref|YP_002425149.1| hypothetical protein AFE_0661 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247467|gb|ACH83060.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218518493|gb|ACK79079.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 351

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 9/342 (2%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
               +    +    L  F   +  A I+ + +WP+      ++       A  AT+ +  
Sbjct: 18  LLAAVLFFALVWKILSPFLPALGWAAILVYATWPLAGPM--RRHWPPVPAAAGATLMLAL 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +FI+P++FL      E+  +++ +   + H                   L       P +
Sbjct: 76  IFILPVIFLSISLGTELHHVLTDLGSVDAHTTLEAS-------LNRIPWLHELLAQIPAA 128

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            K        T  +                +   +I ++I  FFFYR G  +  QL    
Sbjct: 129 WKTKLMPGALTPDLSAWAGRLGSVAGGIGRFGTLLILVLITAFFFYRHGEVLVDQLRRFV 188

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             +         R V   IR+   G+   A+ +G + G  YW+AG+P+ V L ++T + +
Sbjct: 189 GQVLGQRGDAYLRTVASTIRAVIYGILATAVAQGALAGLGYWVAGLPAPVLLAIVTLLFS 248

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP G P+ + A SI+LL +G I+    L LWG + +  +D  +RP ++   +++PFL  
Sbjct: 249 FIPFGTPLVWGAASIWLLSQGEIWAGVGLALWGTLVVSWIDNLIRPLVISNAVRIPFLLV 308

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            FG++GG+   G LGLF+GPVL+A++  IW E +       +
Sbjct: 309 LFGVLGGILAFGFLGLFLGPVLLAVLLAIWSEWLRPAPAAPQ 350


>gi|227501244|ref|ZP_03931293.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227216645|gb|EEI82049.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 405

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/338 (10%), Positives = 102/338 (30%), Gaps = 9/338 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT-------VSVM 71
           ++L +    +     ++ A II             +  + +    ++         +   
Sbjct: 37  LLLGAYSVFRPIMYGLVIAFIINLPMNFFQEKLFGRLIDKNKHRTLVLALSLSLSWIIFF 96

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP--RWLSDIPGGMWASELWTKHLSH 129
            LF + L       +  +  L+  + +     I     + L +       ++L    + +
Sbjct: 97  GLFTIMLTVFIPELVAAISSLIDNIPVFMDKLIEYLNNQKLFNQIAAEVINKLNKLDIEN 156

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                           +       + F    +   +   F I             ++   
Sbjct: 157 ITKDITSLVNGKDMGLLSKTSSLFNSFSSWLMSVIMGFFFSIYVSMNKKALRDGSNKLFY 216

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +  +     +    +++        F    +  +  G +      L  +P    + ++  
Sbjct: 217 ANFDDKTVEHINYFAKLTYDSFSRFFETKLLSCLSIGTICFIGMLLLKLPMAGMIAILVG 276

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +IP   P+  T + + L+   +   A    ++      + +K L P ++G    LP 
Sbjct: 277 AFDIIPYFGPLIATGIGVILIFIQSPSQALVFLVFVLAIQQLQEKILYPLVIGKRQGLPA 336

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +  F  +  G    G++G+     +  +I  + +++I 
Sbjct: 337 IWIFISVFIGAGLFGIVGMVTSMPIATVIYNLIQDNIK 374


>gi|217960763|ref|YP_002339327.1| membrane protein YubA [Bacillus cereus AH187]
 gi|301054849|ref|YP_003793060.1| hypothetical protein BACI_c33060 [Bacillus anthracis CI]
 gi|217067714|gb|ACJ81964.1| membrane protein YubA [Bacillus cereus AH187]
 gi|300377018|gb|ADK05922.1| putative membrane protein [Bacillus cereus biovar anthracis str.
           CI]
          Length = 373

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|297192363|ref|ZP_06909761.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197723035|gb|EDY66943.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 457

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 37/320 (11%), Positives = 101/320 (31%), Gaps = 14/320 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++      ++AL++     P  +    +          +  +
Sbjct: 88  RLLVLAGTLWVLMRVISAVQLVVLAFVAALLVTAMLQPTVARLC-RLGLPRGLATAVTAI 146

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  +  L  +V                     W  +       
Sbjct: 147 LGFVIMGLVGWFVVWQVMDNLDNLSDRVRDGIDELKR------------WLLDSPFHVTE 194

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    + +       + I     +   + ++    I+  + +  F   DG  +   +
Sbjct: 195 SQINDIAQNLSDTIGTNTEEITSAGLQGVSVMVEVLTGILLAMFSTLFLLYDGKRVWLWV 254

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  ++A+ + + +G   +   VP  V L V  
Sbjct: 255 LKLVPAQARPGVAGAGPRAWRTLTAYVRGTVVVALIDAIFIGLGIYFLDVPLAVPLAVFI 314

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +F A  + +       I    L+PF++G  +++
Sbjct: 315 FLFAFIPLVGAVVSGALAVVVGLVTQGVFTALMVLVVVLAVQQIEGHVLQPFILGRAVRV 374

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             L     +  G    G+ G
Sbjct: 375 HPLAVVLAVASGGLVAGIGG 394


>gi|219870889|ref|YP_002475264.1| putative permease, PerM family protein [Haemophilus parasuis
           SH0165]
 gi|219691093|gb|ACL32316.1| putative permease, PerM family protein [Haemophilus parasuis
           SH0165]
          Length = 354

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 98/348 (28%), Gaps = 11/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I   ++YF      P+L A++  +          +K +     
Sbjct: 10  KQKFTDPQIVALLAILIIGFGTIYFFSDLLMPLLIAIVFAYLLEWPIRFLTTKLKLPRML 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI     + L +   + +      +    +  +             L +    +    
Sbjct: 70  SLVIVLGGFISLSVFLFVVMLPSLWNQAVTFLKDLPSMFNLLNAWLEALPEHYPEL---- 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                        + +         D +  F+    +  +   +    + + +FF  +D 
Sbjct: 126 ----IDYAMLDSLMATAKTKILTFGDSLLSFSFNSLVSLVGLGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +               ++   +   I +   G  +  +  G+     +    +   
Sbjct: 182 TLFMRSALRFMP-KNRHLATRVWGEMQLQIANYIRGKFLEILIVGVATYIIFLFFDLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  ++P    +  T       L   G   +   L L   I   +    + PF
Sbjct: 241 LLLSVAVGLSVLVPYIGAVLVTIPVALVALFQFGLSPDFYYLLLAFVISQLLDGNLVVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  L     ++      G  G+F    L  L+  +      
Sbjct: 301 LFSEAVNLHPLTIIVAVIIFGGLWGFWGVFFAIPLATLVKAVINALPN 348


>gi|71898100|ref|ZP_00680286.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|71732074|gb|EAO34130.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
          Length = 385

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 130/349 (37%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +  ++++  +L   + L     P + ++ +G+ + P+          S          
Sbjct: 14  RRLKWYVLVGGVLWMAWLLTPVLIPFVLSVFLGWLADPLVKRVE-WVGVSRAMAVCFVFF 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++ L+        ++  L++     +     V   +         S+L T    
Sbjct: 73  LVVLLLVLVLMIFVPLIERQVVTLINTFPQMHDW---VVNTVIPWVEQKTGSQLRTWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S           +  + SR G + + + +++  + I  F+F RD     +++
Sbjct: 130 EQMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILSFYFLRDWDKWVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +     +++    +V+ +   G  ++ +  G +      L G+   + +G+I 
Sbjct: 190 AAAIPRAYIGTVSRLATEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLRLGLLIGLIA 249

Query: 249 AIMAMIPGGAPISFT----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP    I+         I  +   ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G +G+ +   + A++ V+ + +     E++
Sbjct: 310 IGLHPVAVIFSVMAGGQLFGFVGMLLALPVAAVVNVLLRYAHGRYIESE 358


>gi|119490891|ref|ZP_01623174.1| hypothetical protein L8106_18482 [Lyngbya sp. PCC 8106]
 gi|119453709|gb|EAW34868.1| hypothetical protein L8106_18482 [Lyngbya sp. PCC 8106]
          Length = 339

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 103/346 (29%), Gaps = 23/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+ +    + +M  +   +++ +L   +    P+  A  I     P+ S    +     +
Sbjct: 1   MQISGTTTKTLMAIIATILVVAALQATRSISMPLAFAFFIAVLVHPLQSWLERRLPRWLS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + V+  +       V  L L    +        KV         +   L          
Sbjct: 61  LILVLLLLIGFMGVAVGALTLSAEIIE------PKVPEYLDRLQQMGETLRSWAEERSIP 114

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                              F   +GI+ + + A       L      I ++  L     +
Sbjct: 115 ----------------IPQFNAQDGINQVTQQAIGGIKTLLSAASLFILIVSLLVLLLLE 158

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                +++                    + +R   L MT+     G++  S  ++ GV  
Sbjct: 159 VNQYQEKVKQAFPSRSSDRIINAVSDTSEKLRRYLLVMTLTCCLTGILTASWCFIWGVDL 218

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G++  ++  +P    I      ++   I   +       L  A+   I+   + P 
Sbjct: 219 AFVWGLVAFVLNYVPTLGSIIAVIPPTLVAFIFQGVPRGIATLLGLAVIQTILGNFVDPR 278

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L G  ++L        +V      G+ G  +G  +   I ++ +E 
Sbjct: 279 LQGKTLQLSPFVALVSIVFWGWVWGIPGAILGVPMTISIILMCREF 324


>gi|323698189|ref|ZP_08110101.1| protein of unknown function UPF0118 [Desulfovibrio sp. ND132]
 gi|323458121|gb|EGB13986.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           ND132]
          Length = 368

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 128/333 (38%), Gaps = 2/333 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               ++ F   ++ + ++     P+++  +   +   T+ + +    ++   ++P+ FLF
Sbjct: 31  GFSLVEPFMHTMIFSTVLAVLFTPVFNWALKLCKGRRTWASALTVGIIVFALVLPMAFLF 90

Query: 83  YYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
              + +  E +  +      G       L  +             L   +          
Sbjct: 91  MALISQGVESLVALNAWIAQGTYKSFLSLEMLDKYAALVHEQLPFLRIDEVQIQAGILQY 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  +  F +          +  + M+  LF+F RDG  +   +  L   L P    
Sbjct: 151 SREFAQNMLSFGTSLARDGAKLVMHFLLMVFILFYFMRDGTKMVAYIKRLSP-LKPKQED 209

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I   + +V R   +G  ++A+ +G   G    +AG+P+    G++     +   G  + 
Sbjct: 210 YIIDSLKRVARGVLMGCLLVAVLQGFAGGVGLAVAGIPAFFWGGMMALSSLIPVLGTGLV 269

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +     YL + G    A  L LW  I +  +D  LRP  +    ++     F  ++GG+ 
Sbjct: 270 WVPAVGYLFLSGQWKMAIFLALWCGIFVVGIDTILRPIFMREASRVSTFYIFIAILGGIY 329

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + G+LG+F GP++++ + V+ +  +    ++ +
Sbjct: 330 SFGMLGIFYGPLILSFVMVMLQLYLEEYADDLD 362


>gi|189425972|ref|YP_001953149.1| hypothetical protein Glov_2922 [Geobacter lovleyi SZ]
 gi|189422231|gb|ACD96629.1| protein of unknown function UPF0118 [Geobacter lovleyi SZ]
          Length = 357

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 98/347 (28%), Gaps = 12/347 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   + +  +      L    +  L + +I +   P+      + +        +  V
Sbjct: 17  RLIAGILTIAAVAWLGNALSHTLSCFLLSFVIAYLLDPLVVRLEKRLK--RIHAIALLYV 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +    L FL     +     +  +    Q                + SE  T  L 
Sbjct: 75  VLGIISTFGLAFLLPMLTISWDSFLRNLPQQLQQIKQALLGWQSTLPTHYGSEEITWLLD 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +              +  +    +A  F         ++I   I +FF       I    
Sbjct: 135 NIIGNAD--------SMAEKAGIWAYGFATRMFFNVFNLILAPILVFFMLNYKQKIMDTT 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++ R +   +     G  +++I   L         G+P  +  G+  
Sbjct: 187 ALWIPETRRDLILQMGREIDSSVGGYIRGQVMVSIVVALATIPTLMWLGIPHPILCGLFA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              +++P    I      +       G       + +  A+  F+    ++P +    + 
Sbjct: 247 GAASILPFVGVILAMLPPLLFAWLTYGTGTIIVKVLIAFAVIYFLEGYLVKPLVFKESMN 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L  L T   ++     MG  G+ +   + A + +  +  +     N 
Sbjct: 307 LNPLLTIIMVMAFGELMGFWGILLALPITAAMIIASQHWLKGDFANP 353


>gi|229846326|ref|ZP_04466434.1| hypothetical protein CGSHi7P49H1_06635 [Haemophilus influenzae
           7P49H1]
 gi|260582877|ref|ZP_05850662.1| lipoprotein NlpI [Haemophilus influenzae NT127]
 gi|229810419|gb|EEP46137.1| hypothetical protein CGSHi7P49H1_06635 [Haemophilus influenzae
           7P49H1]
 gi|260094090|gb|EEW77993.1| lipoprotein NlpI [Haemophilus influenzae NT127]
          Length = 349

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 103/348 (29%), Gaps = 11/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    VS+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFVSIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +             K+ + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L     +  ++P    +  T       L   G       + +  A+   +    L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L     ++      G  G+F    L  L+  +       
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 349


>gi|152987375|ref|YP_001349002.1| hypothetical protein PSPA7_3648 [Pseudomonas aeruginosa PA7]
 gi|150962533|gb|ABR84558.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 354

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/350 (20%), Positives = 153/350 (43%), Gaps = 6/350 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + ++R ++  ++  SL+ L  F++ +  A ++ F SWP+            +  A 
Sbjct: 2   FDNDRLLLRVLLFGLLAASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAG 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           + T+  + L  +PL++L +     ++ L+  +     +   P P W++ +P        W
Sbjct: 62  LLTLGWIVLVALPLVWLGFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLVGDRLIGW 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +                   +++   +++ G   L+  LS++ +     FFYRDG  
Sbjct: 122 WDSIDQQGVAFFYVLKPYVGEVGNWLLARSAKIGGGILELVLSLVLIF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   +    E L     +    +V   ++    G+   A  + L+    + +AGVP  + 
Sbjct: 178 LESIVHRALERLIGNRAEHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFTIAGVPGAML 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + +++    P+ +   + +L  +G+  +   L LWG   +  VD  L+P+L+  
Sbjct: 238 LGLLTFVFSLL-MVPPLVWGPATAWLFFQGDYGHGIFLGLWGFFIISGVDNILKPYLISR 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              LP +    G+ GG+   G +GLF+GP+L+A+   +  + I +     
Sbjct: 297 GGNLPLVVVLLGVFGGLLAFGFMGLFLGPILLAVAYNLVSDWIASTPRPP 346


>gi|227543966|ref|ZP_03974015.1| possible permease [Lactobacillus reuteri CF48-3A]
 gi|300909575|ref|ZP_07127036.1| possible permease [Lactobacillus reuteri SD2112]
 gi|227186053|gb|EEI66124.1| possible permease [Lactobacillus reuteri CF48-3A]
 gi|300893440|gb|EFK86799.1| possible permease [Lactobacillus reuteri SD2112]
          Length = 372

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 109/337 (32%), Gaps = 10/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           FI    L F+   F P++ +  + +   P+   F+     +   +    +++  + ++ +
Sbjct: 31  FIFQPFLTFVSVVFVPLIISGFLYYMLNPVLKLFMKIKIGRFHMNRGIASLLIVLLLIVI 90

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  L    + E+  LV  +         +     +              L+     
Sbjct: 91  LVGGIAMLIPPVVKEISTLVRNMPQTVTGIQHLINDTIEHSFLQNVD------LNAYYRQ 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  +         +  +  +  I + + LF+  +DG  +   +     
Sbjct: 145 FDHQLAGYAQKVLQGLSTRVGDIIGMLTNVTVVTITVPVMLFYMLKDGSKLIPSIQKWLS 204

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   +   + S   G  I  +  G+     Y + G P  + LG++  +  +
Sbjct: 205 PHHAKEVNDLLGKMNSTLSSYISGQMIECLFVGVFTSIGYVIIGQPLAIVLGIVAGLTNI 264

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++++ +         + +   +   +    + P ++G  +++  L   
Sbjct: 265 IPYIGPYIGIAPALFVALTMAPNKIIWVIVVVIVVQQVDGNIVYPNIIGKTLQIHPLTII 324

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+      G+ G+ +     A+I  + +      +
Sbjct: 325 MLLLAAGHIAGIGGMILCIPFYAVIKTVCEYFFDIYR 361


>gi|288941027|ref|YP_003443267.1| hypothetical protein Alvin_1296 [Allochromatium vinosum DSM 180]
 gi|288896399|gb|ADC62235.1| protein of unknown function UPF0118 [Allochromatium vinosum DSM
           180]
          Length = 355

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 127/343 (37%), Gaps = 5/343 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +++ +       +K F  P+   +II    +P Y    +         A +  V 
Sbjct: 15  TIRIALLLVLAAWCFDIVKPFVIPIAWGIIIAVAQYPGYLRLRAWLGGRRRAAATLMVVI 74

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +VP + L    +   + L   +          P  + D P       ++    S 
Sbjct: 75  DLLVLLVPAVLLSDTLLDGAQNLAKGLQEGTLAVPRPPESIKDWPLVGEPLNVFWNQASQ 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +               ++    +  G   L + ++II     L               
Sbjct: 135 NLAETAAKFAPQLKASAGWLLATVAGAGFSVLQFIIAIIIAGALLAHSDASAE----FAR 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++   L     ++++R+   ++RS   G+  +A+ + ++ G  + + G+P+     ++  
Sbjct: 191 AVATRLAGEKGEELARLAETIVRSVTKGILGVALIQAILAGIGFMVMGIPAAGLWALLCL 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++ +  G       + IY+    +   A    +W  I   + D  L+P ++G  +++P 
Sbjct: 251 LLSTVQIGIFPITLPILIYVFATADTVPAVLFLVWSLIVGSL-DNVLKPLVLGRGVQVPM 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              F G +GG  + G++GLF+G V++ L   +    +    + 
Sbjct: 310 AVIFVGAIGGFISSGIIGLFVGAVVLTLGYKLLLAWVYERPKE 352


>gi|254519283|ref|ZP_05131339.1| permease [Clostridium sp. 7_2_43FAA]
 gi|226913032|gb|EEH98233.1| permease [Clostridium sp. 7_2_43FAA]
          Length = 343

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 108/318 (33%), Gaps = 13/318 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +      +    I+ +   P+  +   K + S    +    +++    I+    +    +
Sbjct: 33  ISSIVNIIFIGFILAYALKPLRDTISEKFKLSKKISSTSIILTIFLGLILLSYIVIPSII 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E   +   +   +++   +   L+              +            +       
Sbjct: 93  RESYNIGYILDNIDEYVKNIVYKLN-------------LNDISFFESIYNQISEEVNIFF 139

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +        M+  +  +S+  + I  ++F  DG  I  +L  +         K++   
Sbjct: 140 SKVTDNLLENLMVCFESLVSLAIVPIVTYYFLVDGDLIYNKLLLILPTEKRIIAKRVISH 199

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + KV+    +   ++++  G +      +  V   + LG+   I+ ++P   PI     +
Sbjct: 200 IDKVLSRYIISQLLLSLIIGALTFIVLVIIDVKFALILGIFNGILNIVPYFGPIIGGVPA 259

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I++ +  +   A    +   +   I    L P + G    +  +     L+ G +  GL+
Sbjct: 260 IFVALMESPNKALWTLIAIFLIQQIEGNILSPKITGDSTNMHPIIIIILLLVGEKLGGLI 319

Query: 327 GLFIGPVLMALIAVIWKE 344
           G+ +   +  ++ VI+ +
Sbjct: 320 GMIVAVPIGVIVKVIYDD 337


>gi|332042026|gb|EGI78364.1| hypothetical protein HGR_01402 [Hylemonella gracilis ATCC 19624]
          Length = 372

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/357 (13%), Positives = 112/357 (31%), Gaps = 18/357 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE------ESS 59
                ++   I+   +++L+ L     P   A ++ +   P+                  
Sbjct: 6   PAKNTLIWGAIVLAFVLALWLLGPVLTPFALAAVLAYVLGPVVERLHRGARKLTGLDFPR 65

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
             L ++  +  + L +  LL L    + E   L  ++           +     P     
Sbjct: 66  WLLVLLVELLALLLVLGLLLLLVPVLVREWPLLREQLPALLDRLNVAVQ-----PWLGQL 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               +  L+  +S+ +        + +  + R     G + L     ++ + +AL++   
Sbjct: 121 GVTVSLDLAGLKSVLMKHLGGNLEDSMASLMRSLQIGGSLALTLLGHLVLIPVALYYLLL 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D   + + +         A          +V+     G  ++ I   +       L G+ 
Sbjct: 181 DWQRLLRLMREWVPPRLHAACDSFVHEADEVLGHYLRGQLLVMIVLAVYYSIGLSLFGLD 240

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN-------ATCLFLWGAIELFIV 292
             + +G+ T +   IP         +++   +                L +   +   + 
Sbjct: 241 LALPIGIFTGLAVCIPYVGFGVGLLLALLAGLLEFGGMDGGLGRVTLMLTVVYGLGQLVE 300

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              L P LVG  I L  L   F L+   +  G +G+ +   + A++ V  +    + 
Sbjct: 301 SFYLTPRLVGERIGLHPLAVIFALLAFGQLFGFVGILVALPVSAVLLVAARRLRRSY 357


>gi|317491965|ref|ZP_07950399.1| hypothetical protein HMPREF0864_01163 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316920086|gb|EFV41411.1| hypothetical protein HMPREF0864_01163 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 366

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/357 (19%), Positives = 136/357 (38%), Gaps = 6/357 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L         +  +I+  L+ ++ F      A +I   +WP+     +         
Sbjct: 7   KYDLPRIMFGVLFVSLMIVACLWVVRPFILGFAWASMIVIATWPVLIKLQNIFWGKRWIA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            ++ T+ ++ LFI+P+  +    +     ++     A    +P   WL  IP  G     
Sbjct: 67  VLLMTMLLLLLFIIPIALVIGSLIDNSGPVLDWASSAKNWSVPDLLWLKSIPAVGHKLYN 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L+   S+ I          I +    A+  G     + L    M++     Y  G
Sbjct: 127 SWHSMLAGGGSIIIAKIQPYIGQTITWFVAQAAHVGS----FVLHCSLMLLFSALLYSRG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++G+   
Sbjct: 183 EDVALGIRHFAIRLGSDRGDAAVVLAAQAIRAVALGVVVTALVQSVLGGIGLAISGIGYA 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I  +   G  +      I+L   G+    T L +W  +   + D  LRP L+
Sbjct: 243 TLLTVLMFICCLAQLGPLLVLVPAIIWLYWTGDTTWGTVLLVWSCVVGTL-DNFLRPALI 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP +    G++GG+   G++GLFIGPV++A+   +    +    E  + +  
Sbjct: 302 RMGADLPMILILSGVIGGLLAFGMIGLFIGPVVLAVSYRLVSAWVHEAPEPSKDVEQ 358


>gi|290968827|ref|ZP_06560364.1| putative membrane protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781123|gb|EFD93714.1| putative membrane protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 359

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 122/342 (35%), Gaps = 14/342 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------KKEESS 59
            + Q  +R  ++ + ++    +   + P++ +LI  F   PI            K     
Sbjct: 5   KDTQFWLRTALVILAVLLFISIHAVYWPLVVSLIFTFILIPIRDGLRYLVYGICKCRLPE 64

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                 + V ++ +       +    + ++  L +           +   L +    ++ 
Sbjct: 65  NLAIGFSFVILILILACVANVILRPLLYQLNLLAANFNTIVLQMSVLVNHLENDQTHVYI 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E   + ++              TN +  +   A           +    +    F+F +
Sbjct: 125 PEQVKQLINEALVKAGNYGVDSITNVVKSVVVIAGTV--------VEFCVVPFITFYFMK 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  + Q   S+    +    + I+  + +V+     G  I++     V+    W+ GVP
Sbjct: 177 DGAHLVQSFISIFPPTYRPRLEGIAGEIHRVLSRYIRGQIILSCIIAGVIFCGMWIMGVP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + +G++ AI   IP   PI     +I L    +   A  + ++  I   +    + P 
Sbjct: 237 YPMVIGLLAAITEWIPIVGPIVGAVPAILLGATVSGSLALKVLIFYVIVQQMDSHVIMPQ 296

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++G  I+L  +     L+ G   MG+ G+ +   + A++ ++
Sbjct: 297 VMGAVIRLHPVVIIISLLIGGTLMGVAGMILTVPITAVLQIL 338


>gi|256425309|ref|YP_003125962.1| hypothetical protein Cpin_6357 [Chitinophaga pinensis DSM 2588]
 gi|256040217|gb|ACU63761.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 363

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 125/338 (36%), Gaps = 16/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
                 MI+ ++++ L + K FF P+  A ++     P+     +K   +      +A +
Sbjct: 9   NAAAILMILTLVVLILVYGKPFFVPIAFAGLLAMLLLPVSKWLCTKGINN-----AVAIL 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + LF+  L+ +  +   ++ ++        Q  +   + L       +          
Sbjct: 64  LSLLLFVGFLVLVVLFVSWQVSDIAENASQLEQQMMEKYQQLRGWLSTEY---------G 114

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q  +       + +         +     F  +    + +++ +F F      I   +
Sbjct: 115 ISQEKQAQMLKEQQESSAGKASSVLTGIISGFGGFLTDFLLVLVYVFLFTFFRGRIKGFI 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L  H              +  +    G+ ++ I   ++ G  + + GV +     ++ 
Sbjct: 175 VRLVPHSEKEKAVACMHKTQETAQQYLKGLLLMIIFLWVMYGIGFTIVGVKNAFFFAILC 234

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++ +IP    ++ TA+++   L+  G++   T + +   +  FI    L P +VG  + 
Sbjct: 235 GLLEIIPFVGNLTGTALTLLMSLVQGGDMTLVTGILITYGLVQFIQSYLLEPLVVGSGVD 294

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +  + T  GLV G    G+ G+ +   LM ++ VI+  
Sbjct: 295 INPMATIVGLVAGELLWGIPGMVMAIPLMGMMKVIFDH 332


>gi|46447158|ref|YP_008523.1| hypothetical protein pc1524 [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46400799|emb|CAF24248.1| hypothetical protein pc1524 [Candidatus Protochlamydia amoebophila
           UWE25]
          Length = 381

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/327 (11%), Positives = 101/327 (30%), Gaps = 11/327 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              F+   F P++ + +  +   P+   F    + S  F  ++  V +  + ++   +L 
Sbjct: 52  IFNFVSSLFIPIVFSFLFYYLLRPLVCFFE-HLKMSRFFSILLTYVLIGIVLVIFFAYLL 110

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++    +  V   +                    L T      +         L 
Sbjct: 111 PILATQIVAFANTSVETLEKVKN----------SSQTFVLPTGFKLDLEGEIERRLLNLI 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 + +               +  +   +F+  +D    +          F    + 
Sbjct: 161 QYATAILSQNLLDIVGYLTRLATILAVIPFIVFYLLKDDHDFASGFLQHLPQDFGQNVRN 220

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I + + + + +   G+ +I+   G +L   Y + G+   + L ++  ++  IP   P   
Sbjct: 221 ILKNIDETLSNYINGLVLISFSVGSMLFIGYLIIGLKYALILSIMALVLTTIPYLGPFLA 280

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++   +  +      +    AI        + P ++G  + +  L     L+     
Sbjct: 281 ITPAVLTGLSHSPTMTLKVIAVFAIVQQTESNIVSPQIMGQRLNIHPLTLILLLLAAGSL 340

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            GL+GL +     A++ V+ +      
Sbjct: 341 YGLIGLLLATPFYAILKVLAENFYKIY 367


>gi|68248846|ref|YP_247958.1| putative permease PerM-like protein [Haemophilus influenzae
           86-028NP]
 gi|145632482|ref|ZP_01788216.1| lipoprotein NlpI [Haemophilus influenzae 3655]
 gi|145635144|ref|ZP_01790849.1| lipoprotein NlpI [Haemophilus influenzae PittAA]
 gi|229844941|ref|ZP_04465078.1| hypothetical protein CGSHi6P18H1_04272 [Haemophilus influenzae
           6P18H1]
 gi|68057045|gb|AAX87298.1| putative permease PerM homolog [Haemophilus influenzae 86-028NP]
 gi|144986677|gb|EDJ93229.1| lipoprotein NlpI [Haemophilus influenzae 3655]
 gi|145267565|gb|EDK07564.1| lipoprotein NlpI [Haemophilus influenzae PittAA]
 gi|229812075|gb|EEP47767.1| hypothetical protein CGSHi6P18H1_04272 [Haemophilus influenzae
           6P18H1]
          Length = 349

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 103/348 (29%), Gaps = 11/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEMPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +             K+ + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L     +  ++P    +  T       L   G       + +  A+   +    L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L     ++      G  G+F    L  L+  +       
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 349


>gi|86157493|ref|YP_464278.1| hypothetical protein Adeh_1066 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774004|gb|ABC80841.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 359

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/342 (11%), Positives = 102/342 (29%), Gaps = 16/342 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +      L+  +    P    + +  +  P+ ++   ++   +        ++
Sbjct: 20  RALTLLAIGAGFGFLWLARDLLVPTALGVTLALSVHPVVAALQRRRVSRTVASVAGTLLA 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  L       + Y     +     ++             +      + A          
Sbjct: 80  VAVLVG-----IGYVLWGRIAAFADELPGYEGRLREAAAGIRRHAAHLQAQSEQLVQAPR 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 + E                      L +      ++  L+F   +G     +L 
Sbjct: 135 RPGEVKVQEGV-------PWGSLLVGTAQGALTFAGQATVVVFVLYFTLAEGPRFRTKLL 187

Query: 190 SLGEHLFPAYWKKI--SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +       + +     + + +    L    +    G+V  + Y L G+      G+ 
Sbjct: 188 AWADRRPRGRARVLAALEELHRDVEQYMLNRVALNAALGVVTWAVYALYGLEHAAIWGIT 247

Query: 248 TAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           TA++  IP   P        ++ LL  G   +   +     + + +    + P  +G  +
Sbjct: 248 TALLHFIPYVGPALGLFLPAAMALLQYGTAKDVALVTAIYLVLVNVQGNVVDPLFLGKQL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +L  L  F G +      G +GLF+   L++ + ++ +    
Sbjct: 308 RLSPLVVFLGSLFWFWLWGPVGLFLAVPLLSTVRIVCRHLPR 349


>gi|205375165|ref|ZP_03227956.1| hypothetical protein Bcoam_19347 [Bacillus coahuilensis m4-4]
          Length = 361

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 106/339 (31%), Gaps = 9/339 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI    +  LK  F P + A I+ +   P+      K++       ++A ++++  F 
Sbjct: 30  VSFIFTPIVVLLKTIFLPFILAGILFYLCRPLVRFLE-KQKVPKGIAIIVAYIAIILAFY 88

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +      ++   V       +       ++ D    +          S    +  
Sbjct: 89  GIFKLIGPVVNDQIDRFVKNFPKMQEAVEESVTYVQDNWEYLPE--------SVRDMVSF 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   +                      ++ +   LF+  +DG  +   +       
Sbjct: 141 DKAAERAQSFFTGFASDFVSILTNIFSTVFVLVLVPFILFYMLKDGNRLGNFIALFFPAH 200

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K +   + K I S   G  ++++  G +L   Y + G+   + L +   +  +IP
Sbjct: 201 KREDVKGVLGAMDKTISSYIQGQVLVSVCVGTLLLIGYLIIGLDYSLVLALFGMLTNVIP 260

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      ++ + +  +      + +   I   I    + P ++G  + +  L     
Sbjct: 261 FIGPFIAVVPALLVALFQDPIMVVYVAIIMIIAQQIEGNIISPQVMGKTLDIHPLTIIVL 320

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++     +G LG+       A++  +        +  ++
Sbjct: 321 ILFAGNLVGFLGIIFVIPTYAVVKTVIIHLYKLTQVTRD 359


>gi|42783773|ref|NP_981020.1| hypothetical protein BCE_4727 [Bacillus cereus ATCC 10987]
 gi|42739703|gb|AAS43628.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 365

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|302335232|ref|YP_003800439.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
 gi|301319072|gb|ADK67559.1| protein of unknown function UPF0118 [Olsenella uli DSM 7084]
          Length = 435

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/346 (14%), Positives = 118/346 (34%), Gaps = 13/346 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE------ESSTFLAVIATVSVMC 72
            +  SL ++    +P++   +     +P    F  +               V+  + V  
Sbjct: 41  AVGTSLAWVYAIVSPLIVGGLAAILLYPGVKWFARRLGRVPLLSGREKLRHVLGVLLVCV 100

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            F++ L  L    +  +   + ++   N   +             W   L T     P  
Sbjct: 101 CFVLALSVLVALLLSVITGSIHRIRFENLESLAQYLAYGADGLYRWLIRLTTSLGVPPDD 160

Query: 133 LKILSE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +    E          D + +  ++      +   +++F  I   +   D   ++   + 
Sbjct: 161 VNAALEHAETFVFGDGDGLGQTLTKGVTAVRNAASTMVFAAIFAVYLMVDAPHLASYWNG 220

Query: 191 LGEHLFPAY----WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +   L        + +    V         G  I A+  GL++G +  + GV     +G+
Sbjct: 221 VLRSLMGERGYGRFAEFRADVVFAFTGYMRGQFIDAVLVGLMVGVSLTVVGVDFAPVIGI 280

Query: 247 ITAIMAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            T I  +IP   PI    +++   ++ G+I           +  F+  + + P ++   +
Sbjct: 281 ATGIGNLIPYIGPIVSYVLTVAVCVVNGDIGRLVVAAAVLLVIQFVDGQVINPKILSDSV 340

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++  +     L  G R  G+LG+FI     AL  + +++ +   + 
Sbjct: 341 EVHPILVLVALTAGGRLGGVLGMFIAVPCAALAKIYFEKFVAWRRR 386


>gi|167855508|ref|ZP_02478271.1| putative permease perM-like protein [Haemophilus parasuis 29755]
 gi|167853374|gb|EDS24625.1| putative permease perM-like protein [Haemophilus parasuis 29755]
          Length = 354

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 99/348 (28%), Gaps = 11/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I   ++YF      P+L A++  +          +K +     
Sbjct: 10  KQKFTDPQIVALLAILIIGFGTIYFFSDLLMPLLIAIVFAYLLEWPIRFLTTKLKLPRML 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI     + L +   + +      +    +  +             L +    +    
Sbjct: 70  SLVIVLGGFISLSVFLFVVMLPSLWNQAVTFLKDLPSMFNLLNAWLEALPEHYPEL---- 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                        + +         D +  F+    +  +   +    + + +FF  +D 
Sbjct: 126 ----IDYAMLDSLMATAKTKILTFGDSLLSFSFNSLVSLVGLGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +               ++   +   I +   G  +  +  G+V    +    +   
Sbjct: 182 TLFMRSALRFMP-KNRHLATRVWGEMQLQIANYIRGKFLEILIVGVVTYIIFLFFDLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  ++P    +  T       L   G   +   L L   I   +    + PF
Sbjct: 241 LLLSVAVGLSVLVPYIGAVLVTIPVALVALFQFGLSPDFYYLLLAFVISQLLDGNLVVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  L     ++      G  G+F    L  L+  +      
Sbjct: 301 LFSEAVNLHPLTIIVAVIIFGGLWGFWGVFFAIPLATLVKAVINALPN 348


>gi|117620860|ref|YP_858434.1| hypothetical protein AHA_4000 [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562267|gb|ABK39215.1| putative membrane protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 359

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/352 (19%), Positives = 140/352 (39%), Gaps = 6/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++  L    +    +  +I+     L+ F   ++ A +I   +WP+             
Sbjct: 1   MKKVDLAKITLGVLFLSLLIVSCFMVLRPFLPALVWATMITIATWPLMLMVQRLLWGKRA 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWA 119
             A+  T+ ++ +F++PL         +   L+      +    P   WL  +P  G   
Sbjct: 61  LAALSMTLVLLLMFVIPLFMALANVAEKAPMLIELGTTISHSPPPELLWLQQVPLVGGKL 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + W + L+    +              ++   A   G++F+ + L++    +       
Sbjct: 121 YDFWQQILASGGQVLFAKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGLLYH---- 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  ++  +      L        + +  + IR+  +G+ + A+ +  V G    +AG+P
Sbjct: 177 SGEVVATGIRRFAHRLAGERGDNATVLASQAIRAVAMGVVVTALVQSSVAGLGLLIAGIP 236

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L V+  ++ +   G      A   YL   G+    T L +W  +    +D  LRPF
Sbjct: 237 YTMILVVVMFLLIVAQIGPFPVLLACVGYLYWSGDTTWGTFLLVWSLLA-GTMDNFLRPF 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+     LP +    G++GG+  MG++GLFIGPV++A+   +    I    +
Sbjct: 296 LIKRGADLPLILILVGVIGGLLAMGIIGLFIGPVVLAVGYTLLDAWIKEDDQ 347


>gi|297561747|ref|YP_003680721.1| hypothetical protein Ndas_2803 [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296846195|gb|ADH68215.1| protein of unknown function UPF0118 [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 441

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 99/314 (31%), Gaps = 14/314 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PV+ A+ +     PI +    +K         IA +  + +F   +  +    +     
Sbjct: 90  LPVILAVFLTALLMPIANGL-RRKGLGRGLSTTIALLVGLIVFGGVISLIVTPAIQGFGP 148

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV  V  A      +               +     +            + T   D +  
Sbjct: 149 LVDSVTSAITELQDI-----------RLPFVDPALFTDMIDDAWAQIQSMITENQDQLLS 197

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A       +   + I+ +I    +F   G  +   L +L         +    +   V+
Sbjct: 198 GAWTATSAVISVLVGIVLIIALTVYFVHSGDQLMDWLVTLLPARSRPGMRHAGDVAYGVM 257

Query: 212 RSTFLGMTIIAIGEGLVLGSA-YWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYL 269
                G+  +   + + +G A      +   + L V+T + A +P     ++    ++  
Sbjct: 258 GRYVRGVAAVGFFDAVGIGIALVIFLDINLAIPLIVLTFVGAFLPIIGAFLTGLLAALVA 317

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +      A  +     +   +      P + G  + LP      G+  G    G+ G+F
Sbjct: 318 FVTEGWVVALIIVGAVLLVQQLESNVFAPRIYGASLDLPSPVVLIGISVGAVVGGIPGMF 377

Query: 330 IGPVLMALIAVIWK 343
           +   ++A++A + +
Sbjct: 378 LSTPVVAVLAALLR 391


>gi|149275890|ref|ZP_01882035.1| transport protein [Pedobacter sp. BAL39]
 gi|149233318|gb|EDM38692.1| transport protein [Pedobacter sp. BAL39]
          Length = 363

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 115/336 (34%), Gaps = 16/336 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   +   ++   LYF   F  PV  A +       + +   SK          +A+
Sbjct: 5   QRTVYLLLFFVLLFTGLYFAAEFLIPVALAAVFSMLFIRLCNWLESKGMGR-----GLAS 59

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + LF++ +  +      ++  +V  +    +    +   L              + +
Sbjct: 60  FLCILLFVLTVAAIVLLLSWQLSGMVENMDDMKKRLTALLSNLQQWF---------QQQV 110

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               + +         +         + F    +   ++ I +++ +F F  +   I + 
Sbjct: 111 GISPTQQEELVKQQGQSAGSGTGSMLANFAGSIMGILVNTILVLVYMFLFLFNRSHIKKF 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L           I     KV +    G+  + +   ++ G  + + GV   +   V+
Sbjct: 171 ILKLVPQDEKGKADLIVHRAGKVSQQYLSGLGAMIVVLWIMYGIGFSIVGVEGALFFAVL 230

Query: 248 TAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             I+ +IP    ++     V   ++  G+      + +   +  F+    L P +VG  +
Sbjct: 231 CGILEIIPFVGNLTGTSLTVLSVVVQGGDSKMIIGVLVTYGLVQFLQTYILEPLIVGEQV 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +  L T   +V G    G+ G+ +   L+ ++ +I
Sbjct: 291 NINPLFTILVIVLGEMVWGIAGMILAIPLLGIVKII 326


>gi|15603870|ref|NP_246944.1| hypothetical protein PM2005 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12722446|gb|AAK04089.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 417

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 109/337 (32%), Gaps = 16/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + IIL  +        P L +L I     PI     S+K     +LA+   +
Sbjct: 10  KVLVALASIVIILAGVKVASEIAVPFLLSLFIAIICSPIIRFMTSRKVPH--WLAITLLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    +L L      E  + + +  L     I     L+              ++ 
Sbjct: 68  LMILVVFFSVLSLINSTAREFTQSIPQYRLLLSERINALVLLAKKW-----------NIP 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S +   E    +  ++ +      F  +  +  +  + +I  L         ++   
Sbjct: 117 LDLSTERTMEYMDPSVIMNLVSSTLLSFSGVVTNVFVLFLVVIFMLSEAPFAKHKLALVF 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S    +     +     + + + S     T+ ++  G+ +     L  V   +    ++
Sbjct: 177 SSDVRDVHRE--EHYINRILQGVISYLGVKTLTSLLTGVCVYILLELTDVQYAILWATLS 234

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    I      +   L+         + +       IV   + P ++G  + L
Sbjct: 235 FLLNYIPNIGSIIAAVPIVVQALLLNGFPTGLGVAIGVGAVNMIVGNIIEPKMMGRTLGL 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  + 
Sbjct: 295 STLVVFLSLLFWGWLLGTVGMLLSVPLTMVLKIALEA 331


>gi|83590483|ref|YP_430492.1| hypothetical protein Moth_1647 [Moorella thermoacetica ATCC 39073]
 gi|83573397|gb|ABC19949.1| Protein of unknown function UPF0118 [Moorella thermoacetica ATCC
           39073]
          Length = 345

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 112/341 (32%), Gaps = 9/341 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   +     + +   L  LY ++    P + A ++ +   P   +   +        
Sbjct: 5   RALRIWRLAGAGIFLAGALFFLYRVRQVLTPFILAALLAYLLKPAVLALEKR-GVKRPRA 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++ L +    F+    + E+ E ++++         + +        +     
Sbjct: 64  ILILYLFILALSLPVFFFVLPQLVRELNEFIAQLPSFTVEIEGLVQGFYQRYHQVALPAG 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + +    +    +      + +  +    +             +   +  ++  RD  
Sbjct: 124 LRRLVDDSITNVSSALQEGARHAVQALIDLLAGLAS--------FLLAPVLAYYLLRDSE 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I +    L           +   + +V+ S   G  ++++  G + G    L G    V
Sbjct: 176 QIGRAASHLLPIQVKEDILGLWAEIDQVLTSFIRGHLLVSLIVGCLTGVGLALTGSEYAV 235

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LGV+  +  +IP   P+  T   I L +  +   A        +   I    L P ++G
Sbjct: 236 ILGVVVGLADLIPYFGPLIGTVPVIALSLLVSKKAAIMALAVMLVVQQIEGSFLAPRILG 295

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + L  L   F L+ G    G  GL +   L A+  ++ K
Sbjct: 296 TSVGLHPLIIIFALLAGGELWGAAGLILAVPLTAIGYILVK 336


>gi|330994579|ref|ZP_08318502.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758220|gb|EGG74741.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 390

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 84/358 (23%), Positives = 157/358 (43%), Gaps = 8/358 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +M+  + +M  M+  I    +  L  F   +L A I+ F++WP++     ++  S    A
Sbjct: 31  SMMVERIMMGLMLGGIAFGCVLILYPFMTALLWAAILTFSTWPVFMRL--RRGMSLLPAA 88

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN--QHGIPVPRWLSDIPGGMWASE 121
           ++ T+    + +VPL+ +    + ++   +  +V A    H  P+P  ++ IP       
Sbjct: 89  MVMTLLCALVLVVPLVIVVSNSIADVPATLQYIVDAVGTLHLPPLPARVAHIPHFGPEIA 148

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +  S                    +     +         +     +   FFF+  G
Sbjct: 149 DKWQKWSEDVGSIDQVVRPYAGRIGQSVLSAMMQLASGMAHLAM----ALFISFFFWLGG 204

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +     ++   +   Y  +I  IV + IR T  G+   AI +G++ G  + +AG+ S 
Sbjct: 205 DGLGTTFVAVVRRIAGVYADRILGIVGRTIRGTVYGILGTAIIQGILTGIGFAIAGISSP 264

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LG ITA +A++P GAP+ +   +++LL+  +      L L+G I +   D  +RP  +
Sbjct: 265 VLLGAITAFVAVLPIGAPLIWIPAAVFLLLTHHPGWGIFLLLYGTIIVSGADHIIRPMFI 324

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               +LP+L T  G++GGV T G LG+F+GPVL+ +   +  E       +   I  +
Sbjct: 325 ARGAQLPYLLTVLGVLGGVLTFGGLGIFLGPVLIGVGYTLTAEFAAGDPRSNNPIPDD 382


>gi|253577293|ref|ZP_04854611.1| sporulation integral membrane protein YtvI [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843297|gb|EES71327.1| sporulation integral membrane protein YtvI [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 372

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/348 (10%), Positives = 107/348 (30%), Gaps = 10/348 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ + ++++Y+L     P L A +I +   P+   F    +        ++    +   
Sbjct: 17  IVLIVSVLAIYWLLPLGYPFLIAWLIAYAMNPLVLWFQRHLQVPKWLAVTLSLFIYVGSA 76

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + +       + E+                +    +   G         + ++     +
Sbjct: 77  GIIVSAALTRLVKELIHFAESFDHRIAEWRNLLISWTQSEGIQSIITEINRFIADNPGYE 136

Query: 135 ILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 +              I+ +            +  + +  +++A FF        
Sbjct: 137 NTIHKNIDNTAERFGSFVSRLINHVLETIVNLLSSLPNLGVILGVILLATFFISNHWERD 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +     F      I R + + +        I+      ++     + GV S    
Sbjct: 197 MRFLAASVPAPFRKTVGAIWRDLQRALSGYLRAQFIMISITAFIVLIGLLILGVDSAFTY 256

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++  ++ ++P     +     +                     + +  + + P ++   
Sbjct: 257 ALLIGLVDLLPYLGVGTVMIPWLIYAFATGHDTLGIGLAVLYGVILLARQLIEPKVLASS 316

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + L  LPT   +  G++  G+LGL IGPV + ++    +  ++    N
Sbjct: 317 VGLDPLPTLIAMFVGLKLFGVLGLIIGPVTLVILGAAVRAGVVRDLRN 364


>gi|228923341|ref|ZP_04086629.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836295|gb|EEM81648.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 365

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYVLLYISGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTTIISGLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 304 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|291571975|dbj|BAI94247.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 382

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 116/327 (35%), Gaps = 9/327 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              ++ ++++  +  P+ +   S  +       ++  ++++       L +    + ++ 
Sbjct: 40  IILIMISVVLAASIIPLVNWAQS-LKMPRWLAVIVVYLTLIGGITGLGLIIGPSVVDQIN 98

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            LV ++ +  +  + +   ++   G    + +     +        S T         + 
Sbjct: 99  LLVRQLPIFAERSLDLVSNIASSLGEDIPALIDRLVDT-------QSLTNWVIRSSQQLI 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             +       +    S+I  +    +   D  ++ +    L  + +       +  V + 
Sbjct: 152 LRSYGITRGIVGGVFSLILSLFVSGYMVADSKTLVKSFVQLFPYPWNDRLAAQAVPVGRR 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           I S   G  I++   G+ + +     G+    + LG I     +IP   PI     ++ +
Sbjct: 212 IGSYIRGRLIVSAILGVSITTCLGFLGLKDYALGLGAIAGFTNLIPFLGPILGAIPALVV 271

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +    F    + L   I   +    L P LVG  + +  L     ++ GV+ +GL+G  
Sbjct: 272 ALAKGGFLFFWVLLLYVIVQNLETYVLDPLLVGSSVGVHPLYQLLSVLAGVQLLGLIGAL 331

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKI 356
           I P   A IA + +   +  K   E+ 
Sbjct: 332 IVPPWCAGIAALVENLYLEPKRLAEQQ 358


>gi|153833033|ref|ZP_01985700.1| transporter, PerM family [Vibrio harveyi HY01]
 gi|148870754|gb|EDL69660.1| transporter, PerM family [Vibrio harveyi HY01]
          Length = 379

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 114/353 (32%), Gaps = 3/353 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               I   +  FI++V  +    F   +L AL++    +P+      K   SS   A + 
Sbjct: 17  TTSLIRFSVTSFIVIVCWWAFLPFLPILLWALVLAIALYPVKLMIERKMGLSSARTATLI 76

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +   P   +      +   +                 + + P            
Sbjct: 77  AIVGVLILGTPTAMVGNSFASKTLGVFESYRDGTLVVSKPADSVKEWPLVGRKLHKVWDE 136

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +      I            +    A+           +II   I L +      SI +
Sbjct: 137 AAEDLPNFIEKRQPQIKGVFSWFINSATGAAKSVFMLIGAIIIAGIMLAWAQPAARSIRK 196

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S  +        ++       IR   +G+  IA    +  G    L+GVP+     +
Sbjct: 197 IFISFTDEERGPELHEL---TTATIRQVAIGIIGIAFLTAMTFGGVVALSGVPAAALFTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  + A++     I        L           +F    I   ++D  L+P ++G  ++
Sbjct: 254 IALVFAIVQLPVTIIAIVAVAILWSGDTGTIHNSIFTVLLIAASLIDNFLKPLILGRGLE 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +P      G VGG+ + G+LG+FIG   +A    ++ + + A  ++      N
Sbjct: 314 VPMPIVLIGAVGGMMSGGILGMFIGAAFLAAGYQVFMKWVDAETQDVAAELEN 366


>gi|154252605|ref|YP_001413429.1| hypothetical protein Plav_2158 [Parvibaculum lavamentivorans DS-1]
 gi|154156555|gb|ABS63772.1| protein of unknown function UPF0118 [Parvibaculum lavamentivorans
           DS-1]
          Length = 387

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 122/343 (35%), Gaps = 14/343 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++  +  +  + +  IL + Y  +   AP+ +A++  F   P+  +    +      
Sbjct: 31  RARIMRAETALAILAVLAILYTAYLAQNLVAPITAAVVGSFIFMPLMRA-APLRFLPDAL 89

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I   +++      +  L          + + +    +    +   ++ +       E
Sbjct: 90  SASIIVATLIGALAGSVYLLAEPAAEWTARIPAAIEEFEEKSRELSEPMAAMRRASKQVE 149

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T+    P+ + +  E          + +     G       + I+ +   L       
Sbjct: 150 EMTRADDAPREVVVRDE--------GLVAQAMEVAGQKGASILIFIVLLYFLLATGELLR 201

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +    L +       ++I R + + I +    +++I  G G+ +G + W  G+P+ 
Sbjct: 202 DRIIRSAKRLTD---KERARRILRSIEREISTYLFSISLINAGLGVAIGLSMWAIGLPNA 258

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  G   A++  IP    ++  A++ ++      ++ +A        +   I  + + P 
Sbjct: 259 LLWGFAAALLNFIPYAGALAGMALTGFVAFMTFDSVGHALLAPAAYFLCNLIESQFVTPS 318

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++G    L     F  +V      G++G  +   ++ ++   +
Sbjct: 319 VLGRRHTLNAAVVFISIVFWGWMWGVIGAVLAVPILVILNTCF 361


>gi|88859847|ref|ZP_01134486.1| putative permease (PerM family) protein [Pseudoalteromonas tunicata
           D2]
 gi|88817841|gb|EAR27657.1| putative permease (PerM family) protein [Pseudoalteromonas tunicata
           D2]
          Length = 355

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 104/351 (29%), Gaps = 12/351 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P  +  + +   I+  LYF+     PVL A++I F               S    
Sbjct: 11  RKFSDPHSVTLFFVSIAIVALLYFVGSLIIPVLVAVVIAFLLEWPVQKMTQ-IGSSRLTA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + +  +    L I   + +      ++   + +     + G      L      +  S  
Sbjct: 70  SALVMLCFSSLAIASFIGIVPVLWQQLANFLQEAPHMLEKGKAYLLQLPAQYPELITSMQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +   ++  I             I   +       +   + +I + + +FF  +D  
Sbjct: 130 IQTLVGAVENKFIE--------FGQIILSSSLTSLKDIVALLIYLILVPLLVFFMLKDKK 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +  L          ++ R + + I +   G  I  +  G V    + L  +    
Sbjct: 182 ELVGGVSRLLP-EQRRLLSQVWREMHQQIMNYIRGKVIEILIVGGVSFITFALFDLRYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LG +     +IP       T     + L   G       + +   I   +    L P L
Sbjct: 241 LLGALVGFSVLIPFVGAALVTIPVAAVALFQFGLAPEFWYIIIAYGIIQALDGNVLVPVL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               + L  +     ++      G  G+F    L +L+  +        ++
Sbjct: 301 FSEAVDLNPVYIIVAVLFFGGLWGFWGVFFAIPLASLVRALINAWSSEQEK 351


>gi|320526967|ref|ZP_08028156.1| hypothetical protein HMPREF9430_00255 [Solobacterium moorei F0204]
 gi|320132552|gb|EFW25093.1| hypothetical protein HMPREF9430_00255 [Solobacterium moorei F0204]
          Length = 380

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 117/340 (34%), Gaps = 5/340 (1%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPI-----YSSFISKKEESSTFLAVIATVSVMCLF 74
           +      +    +P +  + I F   P+     YS     K +  T   + +  ++    
Sbjct: 37  LYGVFQAIFVALSPFIYGIGIAFLLNPLRKIIEYSWLGKAKLKPRTKKVIASFGALFIGI 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I+  +F        +  + + +     +      +                 +       
Sbjct: 97  IMLFVFFSILIPQMISSIQTFLSSFEGYVDSARNFFESNNFFSDDLLKTLNPVIDKGVSM 156

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +        + ++ I  ++  F    +++ + +I  +  L         I + L +L   
Sbjct: 157 LGDWVSNIASSLNAILMYSVIFAKSVMNFLIGMIIALYILLDEINLKRQIKKVLYALLPE 216

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  + +R+      S   G  + ++  G++         +P    + V+  +  MI
Sbjct: 217 KTTKSILRTTRLTINTFNSFVAGKAVDSLIIGILCYIILSFMKMPYTPLISVVVGVTNMI 276

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P      SI +L+  + F A    ++  I   +    + P ++GG + LP L   F
Sbjct: 277 PVFGPFLGAVPSILILLLVDPFKALEFSIFVLILQQVDGNIIGPRILGGAVGLPTLYVMF 336

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            ++ G    G++G+FIG  + ++I V+  E I    + K 
Sbjct: 337 AIIIGGALFGIVGMFIGVPVFSVIFVLVSEFIHRQLDRKN 376


>gi|228941775|ref|ZP_04104322.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974700|ref|ZP_04135266.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981294|ref|ZP_04141594.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           Bt407]
 gi|228778494|gb|EEM26761.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           Bt407]
 gi|228785103|gb|EEM33116.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817987|gb|EEM64065.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 365

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 304 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|146306691|ref|YP_001187156.1| hypothetical protein Pmen_1660 [Pseudomonas mendocina ymp]
 gi|145574892|gb|ABP84424.1| protein of unknown function UPF0118 [Pseudomonas mendocina ymp]
          Length = 356

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/356 (14%), Positives = 115/356 (32%), Gaps = 12/356 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +     + Q ++  +++ +    +  L G  APVL+ L++ F    + +    + +    
Sbjct: 9   LHRYFSDEQAVVLAVLLVLGFAVVLTLGGMLAPVLTGLVLAFLMQGLVNGLE-RLKVPQI 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +     +    + +L L      ++  L +++         V   L +    +   
Sbjct: 68  LAVWLVFALFLGGLTMFMLVLVPLLWHQLSTLFNELPRMAAEWQAVFLLLPERYPSLITD 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   + +   +                +   F+     + +   + ++ + I +FFF +D
Sbjct: 128 EQVVQLIDSMRGE--------AGKFGQWALSFSLSSLPMLVSIMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I Q           A   ++++ + + I +   G  I  I  G+V   A+   G+  
Sbjct: 180 REQIGQWFRGYLPRE-RALITQVAQEMNQQIANYIRGKFIEIIICGVVTYIAFAFLGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  +  ++P    +  T       L   G       L +   I   +    L P
Sbjct: 239 AALLALLVGLSVVVPYIGAVVVTVPVALIGLFQWGWSDQFLYLMVIYGIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            L    + L  +     ++      G  G+F    L  L   +      A  E  E
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLNAWPRAEPEAIE 354


>gi|254520082|ref|ZP_05132138.1| permease [Clostridium sp. 7_2_43FAA]
 gi|226913831|gb|EEH99032.1| permease [Clostridium sp. 7_2_43FAA]
          Length = 378

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 110/343 (32%), Gaps = 16/343 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-------------KEESSTFLAVIA 66
           ++VS   + G  +P + A  + F        F                +        +  
Sbjct: 31  VVVSFGNVIGILSPFIIAFAMAFVLNLPMKFFEKNVFYFLDKEKSSFVRGLKRPLSILTT 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++V+ L I   LF+    +  +  L+  V    +    +              +     
Sbjct: 91  FITVIGLIIALALFVIPQLVSSVSTLLDTVPEYIKSFEALINEFVS---STEILQNLYNT 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L       +     L T  +  I           +++ LSI+  I  L       +   +
Sbjct: 148 LMSTWKELLQFFGGLLTTSLTGILNTTMNITSGVVNFVLSIVLTIYMLASKETLIYHFKK 207

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L +  +        +I R+          G  I A+  G +      +  +P  + + V
Sbjct: 208 ILYAFSKKSIADKIIEIGRLANVTFAKFITGQCIEAVILGALCFVGMNIFSMPYSLLISV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  + A+IP       T  +++L++  N   A    ++           + P +VG  + 
Sbjct: 268 LIGVTALIPVFGAFIGTIPAVFLILIINPIQALWFIVFILCLQQFEGNIIYPKVVGNSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L  +     ++ G  T+GL+G+ IG    ++   + KE     
Sbjct: 328 LSAIWVMLAMLVGGSTLGLIGMLIGIPTFSVAYQLIKEYTNKR 370


>gi|153808650|ref|ZP_01961318.1| hypothetical protein BACCAC_02949 [Bacteroides caccae ATCC 43185]
 gi|149128476|gb|EDM19694.1| hypothetical protein BACCAC_02949 [Bacteroides caccae ATCC 43185]
          Length = 377

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 122/350 (34%), Gaps = 12/350 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G +  +++  IL+ +  L G   P   A +I +  +P+   F  K +  S  ++++  +
Sbjct: 13  RGAIGCVLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLKLKSRIVSILCAL 72

Query: 69  SVMCLFIV-PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            ++ +  V     L    + E+  +   +V    +G       +         +L   + 
Sbjct: 73  FLITVVGVSLFYLLVPPMISEISRMNDLLVTYLTNGAGNNVPQNLSEFIHENIDLQALNR 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +   + +           +    +    I   + + +  +     F   D  +I++ 
Sbjct: 133 ILSEENILAAIKDTVPRMWALLAESLNILFSILASFIILLYVI-----FILLDYEAIAEG 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L  + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+ 
Sbjct: 188 WLHLLPNKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLF 247

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              + M+P    I F    +  +       +       C     AI   I D  L P ++
Sbjct: 248 IGALNMVPYLQIIGFLPTVLLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIM 307

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G    L        L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 308 GKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|327540823|gb|EGF27384.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 394

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 112/335 (33%), Gaps = 9/335 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +     F+ L +LY  +  F P+L A     T  P+  +   +    S   A    +++ 
Sbjct: 43  IWLCAGFLTLYALYIGRNLFMPILVAGFAYLTLRPVVRAM-GRIGIPSGVAATAIMLAIA 101

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F      L       ++++   +    +    +   L  +              +  +
Sbjct: 102 TVFGTIGYVLSGPAQDMLQQVPGSMPEVKEKLGFIFDHLETVNQATEDIS-----DTADK 156

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                 E  +            S       +    +      LFF    G S+   + S 
Sbjct: 157 ENITSEEKPVPVEIKQPAWTTTSPLIAGTGNAVSFVSIAAALLFFLMAAGDSLIVSVVSS 216

Query: 192 GE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    + ++   V   + S    +T I    G+ +G+A WL G+PS +  GV    
Sbjct: 217 LPSFSSKRRFIEVLEGVQDALSSYLAWVTCINACLGVCIGTAMWLLGMPSPLLWGVAAMF 276

Query: 251 MAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    +        + L+   +   A  +    A    +  + + P L+G  +KL 
Sbjct: 277 LNFIPIVGAMVGIAMVFFVALVSFEHASFAFVVAGTYATLTTLEGQFITPTLLGKSMKLS 336

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  F  +V      G+LG+F+   ++  + ++ +
Sbjct: 337 SVLVFISIVIWGWMWGMLGVFLAVPILIAVVMVME 371


>gi|228922070|ref|ZP_04085381.1| hypothetical protein bthur0011_30620 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837678|gb|EEM83008.1| hypothetical protein bthur0011_30620 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 376

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|23466223|ref|NP_696826.1| hypothetical protein BL1675 [Bifidobacterium longum NCC2705]
 gi|23326967|gb|AAN25462.1| hypothetical integral membrane protein in upfo118 [Bifidobacterium
           longum NCC2705]
          Length = 504

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 108/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 52  RALLYVALAVIVFMFCWRSWGDISYLVFDIIISLFLALAVEPLVVALVAH-GWKRGVASA 110

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +                        +  T
Sbjct: 111 VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYGQIREFAD------------QYTT 158

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 159 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 218

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 219 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 278

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 279 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 338

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 339 RTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 386


>gi|145637214|ref|ZP_01792876.1| lipoprotein NlpI [Haemophilus influenzae PittHH]
 gi|148827377|ref|YP_001292130.1| hypothetical protein CGSHiGG_03820 [Haemophilus influenzae PittGG]
 gi|260580878|ref|ZP_05848703.1| lipoprotein NlpI [Haemophilus influenzae RdAW]
 gi|145269659|gb|EDK09600.1| lipoprotein NlpI [Haemophilus influenzae PittHH]
 gi|148718619|gb|ABQ99746.1| hypothetical protein CGSHiGG_03820 [Haemophilus influenzae PittGG]
 gi|260092501|gb|EEW76439.1| lipoprotein NlpI [Haemophilus influenzae RdAW]
 gi|301168892|emb|CBW28486.1| predicted inner membrane protein [Haemophilus influenzae 10810]
 gi|309972617|gb|ADO95818.1| Putative permease (PerM family) [Haemophilus influenzae R2846]
          Length = 349

 Score =  120 bits (301), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 103/348 (29%), Gaps = 11/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +             K+ + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L     +  ++P    +  T       L   G       + +  A+   +    L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L     ++      G  G+F    L  L+  +       
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 349


>gi|229018580|ref|ZP_04175436.1| hypothetical protein bcere0030_31010 [Bacillus cereus AH1273]
 gi|229024834|ref|ZP_04181267.1| hypothetical protein bcere0029_31410 [Bacillus cereus AH1272]
 gi|228736468|gb|EEL87030.1| hypothetical protein bcere0029_31410 [Bacillus cereus AH1272]
 gi|228742719|gb|EEL92863.1| hypothetical protein bcere0030_31010 [Bacillus cereus AH1273]
          Length = 373

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYI 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPSMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|307728543|ref|YP_003905767.1| hypothetical protein BC1003_0473 [Burkholderia sp. CCGE1003]
 gi|307583078|gb|ADN56476.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 358

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 123/347 (35%), Gaps = 8/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +   I   + + L+ L     P L   I+ +   P  +  + ++       A++  
Sbjct: 13  RRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRV-PRALAALLMM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L  +  L +F     E  +L  +V L   H     +     P         +   
Sbjct: 72  LLFTLLMTLLALLVFAVIQKEGPQLRQQVPLLFTHVNAWLQ-----PKLALLGLADSLDF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  + L +            +          + +    ++I + + LF+   D   +  +
Sbjct: 127 ASVRDLVMGQLEGSAQTVARYAWTSIVTSSNVMMAVVGNLIMVPLVLFYLLYDWNRMLLR 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S+    +     +++R + +++     G  ++     +   +A  +AG    + +G+ 
Sbjct: 187 VQSVVPRRWLDKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAAALSIAGFEIALPVGIF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +  A+++       GN +    + L   +   +    L P LVG  I
Sbjct: 247 TGLAVFIPYVGFATGLALALLAALLQFGNWYGFGAVALIYGVGQIVESFFLTPRLVGERI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  L   F L+   +  G  G+ +   + A+++V  +E   +  ++
Sbjct: 307 GLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAVRELRQSYLQS 353


>gi|229139966|ref|ZP_04268530.1| hypothetical protein bcere0013_30720 [Bacillus cereus BDRD-ST26]
 gi|228643481|gb|EEK99748.1| hypothetical protein bcere0013_30720 [Bacillus cereus BDRD-ST26]
          Length = 376

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|312141448|ref|YP_004008784.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311890787|emb|CBH50106.1| putative integral membrane protein [Rhodococcus equi 103S]
          Length = 383

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 112/352 (31%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +   +  L+    PV  AL+      P   +   ++    +   ++A V
Sbjct: 14  RLLVLFAGLLALGYVVSKLESVVIPVALALLFAAFLMPAVDN-QHRRGVPRSAAVLVAVV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L F+    +  + +L  +   +                  W ++       
Sbjct: 73  GTIGIVGAILSFVVQQFVEGLPDLSDQFTTSVTKAQE------------WLTQGPLHFSE 120

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      +  + +   A     +  +        +  L FF   G  + + +
Sbjct: 121 DQIRHAGDNVVKAIQSNQEALTSGALTTATVIGEIFAGAFLTLFTLVFFLYGGNQVWEFV 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +   R     +         +A  + + +G+   + GVP  + L  + 
Sbjct: 181 TRIIPKNTRGRVRLAGRQGFNSLVHYTRATVAVAAVDAIGIGAGLAILGVPLALPLASLV 240

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     ++     +  L+   +  A  +       + +    L+P L+G  ++L
Sbjct: 241 FVGAFIPIVGAFVTGFLAVLVALVTKGLLTALIVLGIIVGIMQLEGHVLQPLLLGRAVRL 300

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     +  G+   G++G  +   ++A +    +       +  E++  +
Sbjct: 301 HPLAVVLAITTGIVLAGIVGGLLAVPIVAFLNTAIRSLCAGDTDEAEEVYES 352


>gi|238919816|ref|YP_002933331.1| hypothetical protein NT01EI_1920 [Edwardsiella ictaluri 93-146]
 gi|238869385|gb|ACR69096.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 365

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 133/347 (38%), Gaps = 6/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L         I  +I+  L+ ++ F      A ++   +WP+     +         
Sbjct: 7   KYDLARIIFGSLFIALLIISCLWVVQPFILGFTWASMVVIATWPVLMWLQNHLWGKRWMA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+ T+ ++ LF++P+  +    +     ++     A    +P   WL  +P        
Sbjct: 67  VVLMTLLLLLLFVLPIGMVITSLIGNAGPILDWAANARNWQMPQLEWLQTLPLIGARLYA 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + L     L    + ++      FI + A         + L    M++     Y  G 
Sbjct: 127 SWQGLMSEGVLVTKIQPYIGQGITWFITQAA-----HVGGFFLHCSLMLLFSALLYSRGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++G+   V
Sbjct: 182 DVAFGIRRFAIRLAADRGDAAVILGGQAIRAVALGVVVTALAQSVLAGIGLAISGIHYAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+  I  +   G  +       +L   G+   AT L +W  +    +D  LRP L+ 
Sbjct: 242 LLTVVMFICCLAQLGPLLVLIPAVAWLYWSGDNTWATVLLVWSGVV-GTMDNVLRPALIR 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               LP L    G++GG+   G++GLFIGPV++A+   +    I  +
Sbjct: 301 LGADLPMLLVLSGVIGGLLAFGMIGLFIGPVVLAVSYRLVSVWISEV 347


>gi|254234725|ref|ZP_04928048.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126166656|gb|EAZ52167.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
          Length = 355

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 143/334 (42%), Gaps = 6/334 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            SL+ L  F++ +  A ++ F SWP+            +  A + T+  + L  +PL++L
Sbjct: 19  ASLWVLAPFWSALFWAAVLAFASWPLMRMLTRLLGGRESLAAGLLTLGWIVLVALPLIWL 78

Query: 82  FYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            +     ++ L+  +     +   P P W++ +P        W   +             
Sbjct: 79  GFGLADNVRSLMELLKNLQVEGLPPPPSWMAGVPLIGDRLIGWWDSIDQQGVAFFYVLKP 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                 +++   +++ G   L+  LS+I +     FFYRDG  +   +    E L     
Sbjct: 139 YVGEVGNWLLARSAKIGGGILELVLSLILIF----FFYRDGPRLESIVHRALERLIGNRA 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +    +V   ++    G+   A  + L+    + +AGVP  + LG++T   +++    P+
Sbjct: 195 EHYRDLVAGTVQRVVNGVIGTAAAQALLAWIGFMIAGVPGAMLLGLLTFACSLL-MVPPL 253

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +   + +L  KG+  +   L LWG   +  VD  L+P+L+     LP +    G+ GG+
Sbjct: 254 VWGPTTAWLFFKGDYGHGVFLGLWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGGL 313

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              G +GLF+GP+L+A+   +  + I +      
Sbjct: 314 LAFGFMGLFLGPILLAVAYNLLSDWIASTPRTPP 347


>gi|319775891|ref|YP_004138379.1| putative permease PerM [Haemophilus influenzae F3047]
 gi|319896573|ref|YP_004134766.1| permease perm homolog [Haemophilus influenzae F3031]
 gi|329123740|ref|ZP_08252300.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
 gi|317432075|emb|CBY80425.1| putative permease PerM homolog [Haemophilus influenzae F3031]
 gi|317450482|emb|CBY86699.1| Putative permease PerM homolog [Haemophilus influenzae F3047]
 gi|327469939|gb|EGF15404.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
          Length = 349

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 103/348 (29%), Gaps = 11/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEMPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  +  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAIFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +             K+ + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L     +  ++P    +  T       L   G       + +  A+   +    L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L     ++      G  G+F    L  L+  +       
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 349


>gi|296185457|ref|ZP_06853867.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|296050291|gb|EFG89715.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 340

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 110/318 (34%), Gaps = 13/318 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++     +  + II +T  P+             F AV     ++ + +   L +     
Sbjct: 30  IREAIYLLFISFIIAYTLRPMNKYMEQN-GIRKKFAAVSLICILILITMTIFLLIVPSAF 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E   +   +    +    +   L  I        +         +  I           
Sbjct: 89  KESLNISYTIDKIQKIIDNLYLKLKPISNNKTIYAVMNNVSIKINNQLI----------- 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +        +      +SI  + I  ++F  DG +I+ +L +          KKIS+ 
Sbjct: 138 -SLFSKIFDSALNIGQNIVSIAVIPIISYYFLADGDNIANKLLNFFPINSRNMVKKISKD 196

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K++    +   ++    G+V  +      +   + L ++ A   +IP   P+     +
Sbjct: 197 IDKILGRYIVSQLLLCAFIGIVTFAILIFLHIDFPIILSILNAFFNIIPYFGPVFGAVPA 256

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I++ +  +   A  + +W  +   I    L P + G  + +  L     LV G +  G L
Sbjct: 257 IFIALIKSPQKAMWVLIWLYLLQQIEGNILSPKITGDSVNMHPLMVIILLVVGGKIAGFL 316

Query: 327 GLFIGPVLMALIAVIWKE 344
           G+ +   +  +I VI+++
Sbjct: 317 GMILAIPVGVMIKVIYED 334


>gi|295091387|emb|CBK77494.1| Predicted permease [Clostridium cf. saccharolyticum K10]
 gi|295116280|emb|CBL37127.1| Predicted permease [butyrate-producing bacterium SM4/1]
          Length = 418

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 108/355 (30%), Gaps = 21/355 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS--------FISKKEES-------STFLAV 64
           +   L  L+G  AP++   I+ +   P+Y+            + +               
Sbjct: 36  VSAFLGRLRGIAAPIIYGSILAYLLAPVYNRVTGAGLRVLSGRLKSRKHAEVIARAVGTA 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASEL 122
            +   +  +    L  +    +  +    +      Q+     + L   +          
Sbjct: 96  ASLAVIFVVIAGLLQLIIPQVVDSIMGFQAAFPTYLQNLYSWIQKLLADNSEIEQIVIGN 155

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S        + T    N +       S    +  ++  + +  +I + +      
Sbjct: 156 IQTAVSLFDGWLEQAFTRFDMNRLVEFLTGVSSSLFLLFNFVKNWLIGLIVMVYMLNIKD 215

Query: 183 SISQQLDSLGE----HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +  Q   +           +     R+V ++     +G  + ++  G++      +   
Sbjct: 216 RLITQAKKIVYGCLSIRLANHVISEMRLVHRMFGGFIIGKILDSLIIGILCFIGTSILHT 275

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  +  +IP   P      S  L++  +      L LW  I   I    + P
Sbjct: 276 PYALLVSVIVGVTNVIPFFGPFIGAIPSGILVLLVSPVQCAVLLLWILILQQIDGNIIGP 335

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G    L      F ++      G +G+ I     A+I  + K+++      K
Sbjct: 336 KILGNSTGLASFWVLFSILIFGGLFGFVGMIIAVPGFAVIYDLVKKAVNYSLRRK 390


>gi|322514367|ref|ZP_08067416.1| PerM family permease [Actinobacillus ureae ATCC 25976]
 gi|322119737|gb|EFX91779.1| PerM family permease [Actinobacillus ureae ATCC 25976]
          Length = 354

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/352 (11%), Positives = 101/352 (28%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I    +YF      P+L A++  +         +   +     
Sbjct: 10  KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLVAIVFAYLLEWPIRFLMRHFKFPRFL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V+     + L I   + +      +    +  +             L +    +    
Sbjct: 70  SLVVVLGGFISLLIFLFMVMLPSLWNQAVTFIRDLPSMFNLLNAWLEALPEHYPELIDYA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    + + ++  +     L T  +  I               +    + + +FF  +D 
Sbjct: 130 MLDTLMGNLKTKILGFGESLLTLSVHSIISLV--------GLGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +    +           +   + + I +   G  +  +  G+   + +    +   
Sbjct: 182 HIFVRSFVRMLP-KNRRLAANVWFEMQQQIANYIRGKFLEILIVGIATYALFLFFDLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  ++P    +  T       L   G       L L   I   +    + PF
Sbjct: 241 LLLSVAVGLSVLVPYIGAVLVTIPVALVALFQFGLSPEFYYLLLTFVISQLLDGNLVVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     ++      G  G+F    L  L+  +        ++
Sbjct: 301 LFSETVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVVNALPSNEED 352


>gi|313892846|ref|ZP_07826425.1| putative membrane protein [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313442600|gb|EFR61013.1| putative membrane protein [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 373

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 108/334 (32%), Gaps = 13/334 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVSVMCLFIVPLLF 80
           F P++    I F    +   +                      V++ V++  +       
Sbjct: 41  FVPLIVGACIAFVLDILVVRYERWLWPKSESGWRYKIRRPLSLVLSFVTISVIVYFIARM 100

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                +  M  +V+              W+  +   +  +   T   +      +     
Sbjct: 101 ALPQLVHSMSIIVASSPQLYTDFQT---WMQHLTETIPMASNQTLMDTLSGESIVKYTRE 157

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T G  +I           L+  L +IF I  L    R      + + +     +    
Sbjct: 158 WGTKGGTYIVNAMGTVLSWTLNIGLGLIFAIYMLLDKERLMMQGKRIVKAYASDEWVNRV 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             ++R+  +   + F+G  I A+  G+++G   WL  +     +  +  +  +IP     
Sbjct: 218 SYVTRVAVQTFSNFFVGQFIDALILGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIY 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +   +L+  +  +A    +   +   I    + P +VG  + LP L  F  ++ G 
Sbjct: 278 VGGVIGAVMLLTVSPMDALIYVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGG 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             MG+ G+ IG  L+A    +    +     + E
Sbjct: 338 SLMGVTGMLIGVPLVATCYKLLMSDVDERLASNE 371


>gi|225571246|ref|ZP_03780244.1| hypothetical protein CLOHYLEM_07335 [Clostridium hylemonae DSM
           15053]
 gi|225160077|gb|EEG72696.1| hypothetical protein CLOHYLEM_07335 [Clostridium hylemonae DSM
           15053]
          Length = 386

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 99/341 (29%), Gaps = 14/341 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-------------STFLAVIA 66
           +   L F+     P +    I F      +        S                  +I 
Sbjct: 31  VFDILAFVFHILFPFILGGAIAFVLNVPMNFVERHLFGSDKVRKSKVLSKMARPVSMLIV 90

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPGGMWASELWTK 125
            + V  +  + +  L          L   +                +    M        
Sbjct: 91  LLLVFSVIGIVMFILIPQLGRTFANLGESIQAFIPRVQTRAADLFHNNKEVMKWVNDLEF 150

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I        + +D     A         + ++ +F    L    +      
Sbjct: 151 DWNKVMDAGIEFFRSGAGSVLDSTITAAKSIVSGIATFFIAFVFACYVLLQKEKLNIQAK 210

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L +           ++  +      S   G  + A+  G +   +  L  +P  + +G
Sbjct: 211 KVLFAFVRRGRAEAALEVFSLTYSTFSSFLTGQCVEAVILGGMFVVSMALFRLPYALLVG 270

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A  A+IP        AV  +L+   +   A        +   I    + P +VG  +
Sbjct: 271 IVIAFTALIPIFGAFIGCAVGAFLIFMVDPVKALVFVALFLVLQQIEGNLIYPHVVGNSV 330

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G   MG++G+ I   +++++  +++E +
Sbjct: 331 GLPSIWVLAAVSIGGSLMGIVGMLIFIPVVSVVYALFREIV 371


>gi|330991351|ref|ZP_08315302.1| UPF0118 inner membrane protein yhhT [Gluconacetobacter sp. SXCC-1]
 gi|329761370|gb|EGG77863.1| UPF0118 inner membrane protein yhhT [Gluconacetobacter sp. SXCC-1]
          Length = 414

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 1   MRETMLNPQGI-MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           MR + ++ +   +  + +  +  +LYF      P++ AL++             +     
Sbjct: 23  MRHSRIDTRTACLLLLSVLAVFYTLYFASAIILPMILALVVNLLLSTPLRFLHMRLRLPK 82

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-------IPVPRWLSD 112
              A+   + V  +       +       ++     +    +           +      
Sbjct: 83  PLAALCLILCVFGIVGAVGTAISVPATGWLERAPDALNTLRERLAFLRGPFQLLTSASER 142

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           I   M  +     H     +   +      + G++ + RF+S   +    +      MI+
Sbjct: 143 IHNFMTIAGGHVDHTPAETADGHIIVITSPSGGVEGLDRFSSSILLGTQAFMGQFFTMIL 202

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
            LFF    G S+ ++   +           +I+  + + +      +TII    GLV  +
Sbjct: 203 MLFFLLAQGDSLLRRFVEIMPTFADKRRAVQIAYQIERNVSQYLATITIINSLVGLVNMT 262

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIEL 289
             WL G+P+ +  GV+  ++  IP   P+    +     L +  + + A           
Sbjct: 263 QCWLLGMPNPLLWGVVAFLLNYIPIIGPMMGIIIYFLVGLFVYPSAWQALLPPAIYLCIH 322

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               +T+ P ++     L  +     L+      G+ G F+   L+A+  +I
Sbjct: 323 LTEGETITPMVLARRFTLNPVLVMASLMFWDWLWGIFGAFLSVPLLAVFKII 374


>gi|293605887|ref|ZP_06688257.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292815674|gb|EFF74785.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 439

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 104/334 (31%), Gaps = 9/334 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +  +L SL   + F  PV+ A+++ +   P  +     +         I  + +M
Sbjct: 95  LTTLTVLAVLFSLKMAQEFIVPVVMAIVVAYALDPAVALMERVRVPRP-----IGIMLLM 149

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + L  L Y    ++  +V  +   ++        L+   G +         +    
Sbjct: 150 AIIAIGLAGLVYATQSQVSSIVEALPEISRKISRTVGGLTSGHGSLLERLKGAASVLQDT 209

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    +       +  F          +    I  +  +FF    G +  ++   +
Sbjct: 210 GGTPSGRQVVVAKSDAGLSEFLLWGSKGLAAFLGQAIMSVFLVFFLLLSGNAFKRKFVKV 269

Query: 192 GEH--LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        +   +   I      M +  +  G++   A+ + G+ +     V+  
Sbjct: 270 AGKTLSQKKISVHMLDQINSSIHMYMAMMLVTNVALGVLSWGAFRMLGLENAATWAVVAG 329

Query: 250 IMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + +IP   P+     +        G I  A  +     +   ++   +  ++ G   K+
Sbjct: 330 ALHIIPYFGPLLTAVGTGIAALMQFGEIGPALQVAGSSVVIALLIGVLVTTWMSGRIAKM 389

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +  F  L+      G+ G  +   +  +  V+
Sbjct: 390 NSVAVFIVLLLFTWLWGIWGTLLSVPIAFIAKVV 423


>gi|83815462|ref|YP_446239.1| domain of unknown function, putative [Salinibacter ruber DSM 13855]
 gi|294508171|ref|YP_003572229.1| Conserved hypothetical protein containing UPF0118 [Salinibacter
           ruber M8]
 gi|83756856|gb|ABC44969.1| Domain of unknown function, putative [Salinibacter ruber DSM 13855]
 gi|294344499|emb|CBH25277.1| Conserved hypothetical protein containing UPF0118 [Salinibacter
           ruber M8]
          Length = 413

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 120/344 (34%), Gaps = 7/344 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +  +   +++  G    ++   ++ +   P                 ++A  
Sbjct: 67  RFLLGAAAVGSVGWMVWYFAGIVLYLIVGGLLAYLLRPPVDYIQG-LGVGRVPAILVAFA 125

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +V +  +  +   ++++L   +         V   +     G+   E      +
Sbjct: 126 VFLGVIVVIVTSVVPFITRQVQDLSQLIT--IDTAAYVANLIEAQVQGVVPLEQGVLEEN 183

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q+ + L    L       +    S    +F +   +++ +    FF  +D   I + L
Sbjct: 184 VRQAAESLMRGDLVE--GQQVAETVSSVVSVFTNIVYAVVIVPFVTFFLLKDELRIRRSL 241

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L  + +      I   V   I   F  + +      ++  +  W+ G+   +A+G+ T
Sbjct: 242 LHLVPNRYFEVTLSILAKVELNIGRYFRALLVQGTAIAVIASTLLWIVGLRGAIAIGIFT 301

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            +   IP   P         +     G++     + L  A+     +  L+P +     +
Sbjct: 302 GLANTIPYFGPFLGFLAGTLVGIAQTGDVSLVPGVALAMALTQLADNVLLQPLIFSRAAQ 361

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              L   F ++ G +  G+LG+ +   L   + VI ++ + +++
Sbjct: 362 THPLVILFVVLAGAQLGGILGMLMAIPLTTTLRVIVEQLLWSLR 405


>gi|328957089|ref|YP_004374475.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
 gi|328673413|gb|AEB29459.1| putative integral inner membrane protein [Carnobacterium sp. 17-4]
          Length = 364

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 109/317 (34%), Gaps = 7/317 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+   F P++ A  + +   P+      K +    +  +I  +  +       + +    
Sbjct: 39  FVSTLFTPLIVAGFLYYLLNPVIGQLE-KIKIKRKYGIIIVFLLFLGFVAFLAVSVIPNL 97

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++ +L++ +    +        L   P            L        LS   +    
Sbjct: 98  IEQVGQLITSIPSFLKTLEDFSNELLQGPMLENFD------LEKSLGTMDLSIENIANTI 151

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +            +  + I  + I LF+ ++DG      +       +     ++  
Sbjct: 152 FTTLTASVGTLVGALANTTIVIFTVPIILFYMFKDGKHFRPAVAKFFPKEYRGQMIELLG 211

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + I S   G  ++ +   +     Y + G+P  + LG+I  +  +IP   P    A 
Sbjct: 212 QMNETIASYISGQALVCLFVAIFTYLGYLITGMPYGLLLGIIAGVTNIIPYIGPYIGAAP 271

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++++ +  +   A  + L   +   I    + P ++G  + +  L     L+      G+
Sbjct: 272 AVFIALTISPTQALLVALVVLVVQQIDSAFISPNVIGKTLSIHPLTIIVLLLVAGNIAGI 331

Query: 326 LGLFIGPVLMALIAVIW 342
           LG+ +G    A++  I 
Sbjct: 332 LGMILGVPTYAVVKTIV 348


>gi|329957470|ref|ZP_08297945.1| hypothetical protein HMPREF9445_02825 [Bacteroides clarus YIT
           12056]
 gi|328522347|gb|EGF49456.1| hypothetical protein HMPREF9445_02825 [Bacteroides clarus YIT
           12056]
          Length = 376

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 110/335 (32%), Gaps = 11/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP-LLFL 81
            L  L     P   A +I +  +P+ + F  + +  +  +++   +  + +        L
Sbjct: 27  LLKRLSSVLLPFFIAWLIAYLIYPLVTFFQYRLKLKNRIVSIFCALLALLIVGAGTFYLL 86

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   + + +V    HG       + +   +  +              +L     
Sbjct: 87  VPPMIQECGRVQALLVQYFSHGTYNSNVPTSLSEFLRDNIDVKFITELFNKENLLDALKE 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +   +            +I  +++ + F   D  SI++    L    + ++  
Sbjct: 147 AVPRLWSLLSDSIDLLFS----VFTIFIILLYIIFILLDYESIAEGWTHLVPLKYRSFVV 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I   V   +   F G   +A+  G++    + +   P  + LG+    + M+P    I 
Sbjct: 203 GILNDVKVGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNMVPYLQIIG 262

Query: 262 FTAVSIYLLIKGNIFNATCLFLW------GAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           F    I  ++K +        +         +   I D  + P ++G    L        
Sbjct: 263 FVPTIILAILKASDTGGNFWIIIASAMAVFIVVQAIQDGFIVPRVMGKITGLNPAIILLS 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L      MG+LG+ I   L  L+   ++  I+  +
Sbjct: 323 LSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINRE 357


>gi|289551168|ref|YP_003472072.1| hypothetical protein SLGD_01857 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658669|ref|ZP_07911539.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
 gi|289180700|gb|ADC87945.1| hypothetical protein SLGD_01857 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496300|gb|EFU84625.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
          Length = 361

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 36/316 (11%), Positives = 103/316 (32%), Gaps = 11/316 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P + +  + +   P  +    K             ++++ +  V + F+    
Sbjct: 36  IIGSVFLPFILSGFLFYICLPFQTLLE-KFGFPRWASITTIFIALIAIVAVVVAFIAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+  +         +  +          S      L    + +I +      +G
Sbjct: 95  ISNVNSLIHAIPTIQNDVERIINF----------SLKQMDKLPSDVTTRINNTVKSLGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +   +  +   F+     ++ +   L +  +D       +    +     +   + +
Sbjct: 145 VSDVLANSLSYITSFISTIFLLVMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFAVGLLQ 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G++L   Y + G+P    L +   +  +IP   P    A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AGILGIIDSPTTFIWVCIVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVI 341
             + I   L A++  +
Sbjct: 325 TLILIAVPLYAVLKTV 340


>gi|124515995|gb|EAY57504.1| conserved hypothetical protein [Leptospirillum rubarum]
          Length = 361

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 131/341 (38%), Gaps = 1/341 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   + + +  +    +  + + +L A I+ F   PI++  + K      + A++ T   
Sbjct: 21  IAMALFLCLFGLLYLIIAPYLSALLWAAILSFAVTPIHAFLLRKIG-RPAWTALLTTFLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   + PLL L      E+   V+ +    +               + +           
Sbjct: 80  LGFVLAPLLSLGVPLSHELILAVNGIRTFLEDPHSKVPDWIARLPLVGSRIDALLTGLKT 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             + +   T      I                + L     ++A F F   G +I   L  
Sbjct: 140 HPIGLDVATAKLQTHILAFGDQVLSLATNLGKWFLKFFIFLLAFFAFTLHGETIWATLSR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L         +   +++P   R    G+   A+ + ++    +W AG+P+ + L  I  +
Sbjct: 200 LFTQWAGNRMEIPLKVIPATTRGVLYGVFFTALFQAILSAIGFWAAGLPNVLLLTTIAFL 259

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            A+ P GA + +    +YL +  +   A    LW  +   I++  ++P  +G    +PFL
Sbjct: 260 AALFPIGAVVVWVPSLLYLAVMHHWIAALIFGLWNLLGGGIIEHFIKPMFIGRSSDIPFL 319

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               G++GG+   GL+GLFIGPV++++   + K    +  E
Sbjct: 320 AILLGVMGGLEAFGLIGLFIGPVVLSVTLALLKALASSPSE 360


>gi|73542584|ref|YP_297104.1| hypothetical protein Reut_A2900 [Ralstonia eutropha JMP134]
 gi|72119997|gb|AAZ62260.1| Protein of unknown function UPF0118 [Ralstonia eutropha JMP134]
          Length = 379

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 131/349 (37%), Gaps = 3/349 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  +++        FF  V+ ALI+  T +P+      +   S   +A +  +  
Sbjct: 20  IRAGLIATLVIFCFEIFHPFFDLVVWALILAVTIYPLQVRLRGRLGLSEGHIATLIVLLS 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +VP   L       ++  +  V             ++  P        + +  +  
Sbjct: 80  IAIILVPAYLLGVAVFESVERAIDVVKDGRLSIPQPAESVASWPLVGQQLYAFWQQAATD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S  ++            +    +  G   L +  ++I   I + +      S  +    
Sbjct: 140 LSGLLMKVAPQLKGFSVGLLAKLAGLGTGLLVFVFALIIAGIIMAYGEMGSRSAERIASR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P    +I  +    IR+   G+  IA  + +++G A+ +  +P    L +   +
Sbjct: 200 IVG---PDRGLRIVELCTATIRAVAQGVVGIAFIQMMLIGVAFIVKDIPGAGLLALAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++   A +    V +Y+        AT +F        + D  L+P L+G  + +P  
Sbjct: 257 LGIMQLPATLITVPVIVYVFATEGTTFATIVFSIYVFVAGLADNVLKPLLLGRGVDVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               G +GG+ + G++GLFIGPV++A+   ++   +       E ++  
Sbjct: 317 VVLIGALGGMVSGGIIGLFIGPVMLAVGYRLFWLWVDEPAATVEVVTPE 365


>gi|47565007|ref|ZP_00236050.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47557793|gb|EAL16118.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 365

 Score =  120 bits (301), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +       +L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLVFVIIATVGGFYALLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKARV 351


>gi|206974666|ref|ZP_03235582.1| YubA [Bacillus cereus H3081.97]
 gi|206747309|gb|EDZ58700.1| YubA [Bacillus cereus H3081.97]
          Length = 373

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|186471214|ref|YP_001862532.1| hypothetical protein Bphy_6456 [Burkholderia phymatum STM815]
 gi|184197523|gb|ACC75486.1| protein of unknown function UPF0118 [Burkholderia phymatum STM815]
          Length = 367

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/349 (16%), Positives = 128/349 (36%), Gaps = 3/349 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  + +        F   ++ ALI+  T +P+              +A +  +  
Sbjct: 20  IRAGLIAVLAVFCFRIFVPFLNLMVWALILAITLYPLQVRLRRALGGKDGLVATLIILIA 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +VP   L       ++  +  V   N    P    ++  P        + +  S  
Sbjct: 80  FGVILVPTYMLGLAVADSIEHAMGIVKSGNFRIPPPADSVASWPVVGQRVYDFWQAASTD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +                +    +  G   L + +++I   I   F           +  
Sbjct: 140 ITGLAQKFAPQLKGAAVVLLETVTGLGAGLLIFFVALIVAGI---FMAHGEKGYRSAVQI 196

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                 P    +I+ +    IR+   G+  IA  + L++G  + + G+P    L +   +
Sbjct: 197 ASRISGPDNGAQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFVVMGIPGAGLLALAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++   A +    V +++++   +  AT +F        + D  L+P L+G  + +P  
Sbjct: 257 IGIMQLPATLITVPVIVFVIVTEGVSTATIIFSVYVFVAGLADNVLKPLLLGRGVAVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               G +GG+ T G++GLFIGPV++A+   ++   +    + K   +  
Sbjct: 317 VVLIGALGGMVTGGVIGLFIGPVMLAVGYELFWRWVRDQPQVKSVQTQE 365


>gi|194290638|ref|YP_002006545.1| hypothetical protein RALTA_A2553 [Cupriavidus taiwanensis LMG
           19424]
 gi|193224473|emb|CAQ70484.1| conserved hypothetical protein, DUF20; putative PERMEASE
           TRANSMEMBRANE TRANSPORT PROTEIN [Cupriavidus taiwanensis
           LMG 19424]
          Length = 357

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 113/335 (33%), Gaps = 8/335 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++  ++   +  ++  L     P L A I  +   P       ++         +  
Sbjct: 12  KRILLWIVVAVALFAAILALAPVLTPFLFAFIFAYILNPGVDWLQRRRV-PRAIGVTLMI 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  + ++ +L L      E+ ++  ++ +  +    V       P             
Sbjct: 71  LLLTVVCVMLVLLLIAVLQREIPQVREQLPILLKKLNSVVS-----PRLAEFGVRVRFDF 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +++          + +  +  +    G   +     +  + I +F+   D   + ++
Sbjct: 126 PGLRNMMSDRFAASPEDLLVVLLNYVKMSGSALITVAGIVFIVPIVMFYLMMDWHMVMRR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ +    +    ++++     ++     G  ++ +    +      +AG    V +GV 
Sbjct: 186 IEGVVPRRWVPKVRELTNETDALLSQYLRGQILVMVILAAIYSIGLTIAGFDIGVPVGVF 245

Query: 248 TAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP         +++   LL  GN +    + +      FI    L P LVG  I
Sbjct: 246 TGLAVFIPYIGFGVGLVMAVLAALLQFGNWYGLAAVAVVYGFGQFIESFYLTPRLVGERI 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  L   F L+   +  G  G+ +     A++ V
Sbjct: 306 GLHPLVVIFALLAFGQLFGFFGVLLALPTCAVLLV 340


>gi|165868397|ref|ZP_02213057.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167631786|ref|ZP_02390113.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167637242|ref|ZP_02395522.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170684738|ref|ZP_02875963.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170704986|ref|ZP_02895451.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177649869|ref|ZP_02932870.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190564566|ref|ZP_03017487.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196035580|ref|ZP_03102984.1| putative membrane protein [Bacillus cereus W]
 gi|196038071|ref|ZP_03105381.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196042964|ref|ZP_03110203.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|218904496|ref|YP_002452330.1| hypothetical protein BCAH820_3380 [Bacillus cereus AH820]
 gi|225865335|ref|YP_002750713.1| YubA [Bacillus cereus 03BB102]
 gi|227813813|ref|YP_002813822.1| hypothetical protein BAMEG_1218 [Bacillus anthracis str. CDC 684]
 gi|229604616|ref|YP_002867574.1| hypothetical protein BAA_3443 [Bacillus anthracis str. A0248]
 gi|254685931|ref|ZP_05149790.1| permease [Bacillus anthracis str. CNEVA-9066]
 gi|254723334|ref|ZP_05185122.1| permease [Bacillus anthracis str. A1055]
 gi|254738401|ref|ZP_05196104.1| permease [Bacillus anthracis str. Western North America USA6153]
 gi|254742432|ref|ZP_05200117.1| permease [Bacillus anthracis str. Kruger B]
 gi|254752717|ref|ZP_05204753.1| permease [Bacillus anthracis str. Vollum]
 gi|254761231|ref|ZP_05213255.1| permease [Bacillus anthracis str. Australia 94]
 gi|164715123|gb|EDR20640.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167514749|gb|EDR90115.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167532084|gb|EDR94720.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170129841|gb|EDS98703.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170670998|gb|EDT21736.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172083821|gb|EDT68880.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190563883|gb|EDV17847.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991881|gb|EDX55845.1| putative membrane protein [Bacillus cereus W]
 gi|196026448|gb|EDX65116.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196031341|gb|EDX69938.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|218540215|gb|ACK92613.1| putative membrane protein [Bacillus cereus AH820]
 gi|225786385|gb|ACO26602.1| YubA [Bacillus cereus 03BB102]
 gi|227004470|gb|ACP14213.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|229269024|gb|ACQ50661.1| putative membrane protein [Bacillus anthracis str. A0248]
          Length = 373

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|300118343|ref|ZP_07056090.1| permease [Bacillus cereus SJ1]
 gi|298724312|gb|EFI65007.1| permease [Bacillus cereus SJ1]
          Length = 373

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRQPAAMRILDEMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|302038875|ref|YP_003799197.1| hypothetical protein NIDE3589 [Candidatus Nitrospira defluvii]
 gi|300606939|emb|CBK43272.1| conserved membrane protein of unknown function DUF20 [Candidatus
           Nitrospira defluvii]
          Length = 360

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 152/359 (42%), Gaps = 7/359 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +N Q I       ++L  LY      + F  PVL A+I+    +P++    +      + 
Sbjct: 1   MNRQQIFALCFFGVLLALLYQMGLMFRPFVFPVLWAVILAHLCFPLHIRLTAWLGGRESH 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWAS 120
            AV+ T++ + L +VPL+ L    + E       V      G +           G    
Sbjct: 61  SAVLLTLAALALVVVPLVVLSVMLVKEAGSADRAVREWIASGGVQQLPDRLSGLPGGHLV 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W +  +  +S               FI    S             + M+  LFFF++D
Sbjct: 121 REWLERFTGRESDLEQFVLSSAKTFSRFIVGELSDLVRDVFMLVADFLVMMFTLFFFFKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L +L   L  ++  KI   + + IR+   G+ + AI +GL+ G AY + GVP 
Sbjct: 181 GRHWLASLYALIP-LEASHKDKILARLDQTIRAVVKGIVLTAIAQGLLAGVAYAVLGVPF 239

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + L  +T ++A +P G   + +  V++YLL  G +     +  WG   +  +D+ L+P 
Sbjct: 240 PMVLMALTILLAPLPFGGTALIWGPVALYLLWAGAVGKGLVMLAWGIGVVSTIDQILKPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +G   ++P L   F ++GG+   G+LGLF+GP+L+ L     +      +++     +
Sbjct: 300 FIGQGAEIPVLLLTFSVLGGLAVYGILGLFLGPILVGLFLTALQIYRDDYQQHLPAPPA 358


>gi|282881880|ref|ZP_06290531.1| putative permease [Peptoniphilus lacrimalis 315-B]
 gi|281298289|gb|EFA90734.1| putative permease [Peptoniphilus lacrimalis 315-B]
          Length = 415

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 116/349 (33%), Gaps = 17/349 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMC 72
               L     P +   ++ F    + + F  K           +       +++   +  
Sbjct: 59  IFVTLLSIMFPFILGGVLAFMIKIVLNFFEEKLFNKIKSARFQKHKRKISILVSIFVIFL 118

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV---PRWLSDIPGGMWASELWTKHLSH 129
           +  + L  +    +  + +L + +    Q  I       ++ +    M            
Sbjct: 119 IIFIILRIVVPQFISSISKLQTALPPLIQKAIDKSRNIAFIDEYSDKMQKIYDHLSVSKI 178

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              ++   +     + I    + A       L   ++ +  +I   +   D   +  Q  
Sbjct: 179 FDQIREFVKNQGDNSSISTAFQRAYSTATNILGGIVNFVLALITAIYILSDKEHLEYQSK 238

Query: 190 SLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +   +F          + +++ +       G  I +   G+++    +LA +P+   LG
Sbjct: 239 RIVYSIFSQKTSGKIFHVFKLLHQNFERFIRGQIIDSTVLGIIVFIFSFLAKMPNATTLG 298

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  ++P   P     +   L++  +   A    ++  I   +    + P LVGG +
Sbjct: 299 VLAGVTNLVPIIGPFIGGFMGFVLIVIDDFSKAIIFVIFIFIMQQVESNLIYPKLVGGAV 358

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP L T   +  G    G++G+++   L + I  +  E      + K+
Sbjct: 359 GLPALWTLIAITVGGSLFGVVGMWVFIPLTSTIYTLIGEYTKYKIDKKD 407


>gi|303240125|ref|ZP_07326646.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
 gi|302592394|gb|EFL62121.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
          Length = 357

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 108/332 (32%), Gaps = 2/332 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   ++F   V + ++  F AP + A+II   + P+     SK +      ++ + + 
Sbjct: 15  ILIVAGLLFGAYVGIKYVIAFLAPFILAVIISSINEPVVRFLESKAKMDRKAASISSLIL 74

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +C+     + + +    E+ +L   +         +           + +  +    S 
Sbjct: 75  SVCVIAAIAVLVLFKTYGELIKLQRNLPAYIDSSSYILSGYYSRINSFYNNLPYQVQSSF 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            ++L +          I  I               +     +++ +F   D  +I   + 
Sbjct: 135 RENLLVFLPKI--EGLITSIATSIINSITSLPKLGVFTTVTLLSSYFISSDRKNIRNFIY 192

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
               +     +  +       I   F    II     +V    + +      V +G+ITA
Sbjct: 193 RQIPNRSQKNFYTVKNGTVSSIFGYFRAQMIIMTVTFVVSTLGFIIINTEYAVLMGLITA 252

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +   IP           I                   +   IV + + P +V     L  
Sbjct: 253 LADGIPLLGSGIVMIPWIIWNFITGNIRMGLGLSSVYLFAVIVRQIIEPKIVSNQTGLHP 312

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L T   +  G+   G+ GLFIGP++M  +  +
Sbjct: 313 LVTLISMYLGLMIFGVTGLFIGPIIMIFLKSL 344


>gi|119899427|ref|YP_934640.1| hypothetical protein azo3137 [Azoarcus sp. BH72]
 gi|119671840|emb|CAL95754.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 372

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 105/324 (32%), Gaps = 8/324 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + L    AP   A +  +   P  +  + ++        ++    +  + +   L L 
Sbjct: 24  LFWLLSPILAPFAVAAVFAYICDPAVNWMVVRRVPRP-AAVLLVITGLALILVALTLILV 82

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E   L+ ++    +        L     G+       +  +      +       
Sbjct: 83  PMLYREAVTLIQRLPDLVEVFNQRAAPLLREHLGIRL-----QLDAGQARKWLAQNADTA 137

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + I  +       G+  +    ++  + + +F+  +D   +   L       +     +
Sbjct: 138 QDVIPILLGHIKTGGLALIALVANLFLVPVVMFYLLQDWPRLLAALQRSVPRPWLERTMR 197

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I R +  V+     G   + +   +      WLAG+   + +GVIT ++  IP       
Sbjct: 198 IIRDIDSVLSEFLRGQLSVMLLLAVFYSVGLWLAGLNFALPVGVITGLLVFIPYVGFGGG 257

Query: 263 TAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             ++I               + +   +   I    L P+LVG  I L  L   F L+   
Sbjct: 258 LVLAILAALLQGDGWSTLIGVGVVYGLGQLIESFALTPYLVGERIGLHPLAVIFALMAFG 317

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
           +  G +G+ +   + A + V  +E
Sbjct: 318 QLFGFVGVLVALPVSAALLVALRE 341


>gi|120554613|ref|YP_958964.1| hypothetical protein Maqu_1693 [Marinobacter aquaeolei VT8]
 gi|120324462|gb|ABM18777.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 358

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 112/358 (31%), Gaps = 12/358 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + + ++ ++++    V + +     AP +++LI+ F    + S   ++        
Sbjct: 11  KYFSDEEAVILFLLLVTGTVFIIWFGAMLAPAIASLIVAFILQGLVSKL-NRMGVPELIA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   V  + + +  +  L      ++  L  +     +        L      + ++E 
Sbjct: 70  VIGVFVVFLGVLVGFIFGLLPLIWTQLSTLAGEAPRIIRELQSYLEVLPQQYPHLVSAE- 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    +      +    +   ++  F+       +   + ++ + I +FFF +D  
Sbjct: 129 -------SVNTMYQQISAEVGHLTQWLVSFSLSSIPDLVALLIYMVLVPILVFFFLKDRR 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +      L          +I   V     +   G  +  +  G V   A+   G+P   
Sbjct: 182 VLVNSFARLLPPQ-RPMMVRIWHEVNLQCANYVRGKAVEILIVGGVTYVAFKFLGMPYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  +IP       T       L   G   +   + +   I   +    L P L
Sbjct: 241 LLSLLVGLSVVIPYIGAAVVTIPVAVIGLFAFGWGSHFIWVMVIYGIIQALDGNVLVPIL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                 L  +     ++      GL G+F    L  ++  ++    +        I+ 
Sbjct: 301 FSEVNNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAVFAAWPVKESPPPPAIAE 358


>gi|218548727|ref|YP_002382518.1| inner membrane protein [Escherichia fergusonii ATCC 35469]
 gi|218356268|emb|CAQ88885.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324113453|gb|EGC07428.1| inner membrane protein ydiK [Escherichia fergusonii B253]
          Length = 370

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 135/349 (38%), Gaps = 6/349 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F   +  A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHLGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFAAWVDEV 348


>gi|94967597|ref|YP_589645.1| hypothetical protein Acid345_0566 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549647|gb|ABF39571.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 394

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 123/339 (36%), Gaps = 11/339 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   ++   +L  +Y         L AL+  +   P+ S        S     +I  V
Sbjct: 45  RVLTTVLVFAAVLAFIYVAHKTLILFLFALLFAYLLEPVVSRLAGWMRNSRGLAILIVYV 104

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     +    +      E ++L  ++              +      W++E   +  +
Sbjct: 105 LLFVAVTIAGALIGPRIFSEGQKLGQQLPDLYDKVASGNIAFTLGSRHGWSAETSQRLKT 164

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S +    + + + G               L     II + I   F  +D   +   L
Sbjct: 165 LLVSHQDEIVSAISSAGTRTAA---------MLTNIGWIIIIPILGAFLLKDKRDLRLSL 215

Query: 189 DSLG-EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            ++  E     ++ ++   V  ++        ++AI  GLV  +A  +  VP    LG +
Sbjct: 216 QNIVGEPRKREFFGQLITDVDAMLSQFVRAQLLLAIISGLVYTAALSVLQVPYAYILGAV 275

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  +P   P I+   +        N  +   + ++  +   + D  + P L+GG ++
Sbjct: 276 GGLLEFVPLVGPAIAAVGIVGVCFGTPNFHHTLWVVVFLGVWRLLQDYVISPRLLGGKVE 335

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  L T FG++ G    G+LG+++   +MA I +++   
Sbjct: 336 LHPLLTIFGVLAGGEVAGVLGIYLSVPVMATIRILFIHW 374


>gi|228954865|ref|ZP_04116885.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228960864|ref|ZP_04122497.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229048303|ref|ZP_04193871.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH676]
 gi|229112062|ref|ZP_04241605.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-15]
 gi|229129880|ref|ZP_04258846.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-Cer4]
 gi|229152791|ref|ZP_04280974.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1550]
 gi|229180915|ref|ZP_04308250.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           172560W]
 gi|229192797|ref|ZP_04319755.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           10876]
 gi|228590636|gb|EEK48497.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           10876]
 gi|228602472|gb|EEK59958.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           172560W]
 gi|228630611|gb|EEK87257.1| Sporulation integral membrane protein YtvI [Bacillus cereus m1550]
 gi|228653571|gb|EEL09443.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-Cer4]
 gi|228671385|gb|EEL26686.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-15]
 gi|228723028|gb|EEL74405.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH676]
 gi|228798760|gb|EEM45740.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228804854|gb|EEM51453.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 365

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 304 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|229156954|ref|ZP_04285035.1| hypothetical protein bcere0010_31380 [Bacillus cereus ATCC 4342]
 gi|228626444|gb|EEK83190.1| hypothetical protein bcere0010_31380 [Bacillus cereus ATCC 4342]
          Length = 376

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGVILAIPGYAILKVLVTH 367


>gi|78222370|ref|YP_384117.1| hypothetical protein Gmet_1154 [Geobacter metallireducens GS-15]
 gi|78193625|gb|ABB31392.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 358

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 72/342 (21%), Positives = 143/342 (41%), Gaps = 3/342 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +       +  V    +  F   +  A +IG  ++PIY    +      T  A + T + 
Sbjct: 10  VAFSFCAILGYVVYAIVSPFLNSLGWAAVIGILTFPIYRRLRAGLGARDTLAAGLMTPAT 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSH 129
           +   +VP + L ++ + E       +      G   +   + + P           +   
Sbjct: 70  VLTLVVPFVGLTFFLVQEAAVAYGFLEKIAADGGESLVMSIQNHPVVKPWIARIEAYTGP 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                              +  ++         + + ++ M+I LFF YRDG  + +   
Sbjct: 130 LGFEIDTRFLPEMKEVAARVLNYSKEIVKNVFIFSIKLLLMVITLFFIYRDGERVQRHAL 189

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++   L  A  + ++  V +V+++   G+ +  + +G + G  +W AG+PS +  G I A
Sbjct: 190 AVIP-LTEANKQILTDTVRRVLKAVMYGVFLTCLVQGALGGIGFWAAGLPSPLLFGAIMA 248

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A+IP     + +   +IYLL  G +     L +WG + +  +D  +RPF + G  KLP
Sbjct: 249 VCALIPVVGTGLIWLPAAIYLLANGEVVKGIGLIIWGFVAVSSIDNVIRPFFISGRAKLP 308

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L    G +GG+ + GLLG   GP+++AL   +++     ++
Sbjct: 309 VLVIAIGGLGGLASFGLLGAVAGPIVLALFLALFEMYRDEVE 350


>gi|152976977|ref|YP_001376494.1| sporulation integral membrane protein YtvI [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152025729|gb|ABS23499.1| Sporulation integral membrane protein YtvI [Bacillus cytotoxicus
           NVH 391-98]
          Length = 372

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 118/348 (33%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+  MI  I    L ++ G   P + AL   +   P+ +              +++ +
Sbjct: 11  RLILVIMITIIGFYVLIYIAGLIYPFIIALAFAYLINPVVNFLNRNLHFPRALSVLVSLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V       +   +  +         +L +K   
Sbjct: 71  LVFGAIVGLVTYLVTEVISATTYLLQIVTDKFPTIVQYAQQFALNNIMPLYDDLISKFNH 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +S +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 131 LGESQQHTITQNIQNLGTEATKQMKDLLTAIISGLTNFISALPTTLTVLVFILLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ +      +    Y K I   + K           +     +++     +  V
Sbjct: 191 FDWHRLAHKTRHFLPNRVHGYGKTIFVDLRKASFGFVKAQLTLVSMTTIIVLVGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT I+ ++P     +     +  +            L   I + +  + + P
Sbjct: 251 PYAITIALITGIVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIIVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  LPT   L  G +  G LGL +GPV + L+  + K  +
Sbjct: 311 KVLSSNIGLDPLPTLVALFVGFKLYGFLGLIVGPVTLVLLNTLHKAHV 358


>gi|300115131|ref|YP_003761706.1| hypothetical protein Nwat_2608 [Nitrosococcus watsonii C-113]
 gi|299541068|gb|ADJ29385.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 360

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/339 (22%), Positives = 142/339 (41%), Gaps = 4/339 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  +++ I+ V L  +  +   VL A+I     +P+Y+  + K        ++   
Sbjct: 13  RKIFIMLLLISILAVFLVMIHEYIIAVLLAIIFTAMLYPVYAWILKKFHGKQVLSSMTTL 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + +  +PLL L      E  ++   +    +    +P               +   L
Sbjct: 73  LLAILMIGLPLLGLLGAVAAEAIQVSDTIGPWIEK--KIPDQNVSSLHEFPQWLPFADQL 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              ++  +        N   FI    S+     + + +    M+ A+FFF+  G      
Sbjct: 131 EPYRTRILAKVGEFAGNAGAFIASGISKATQGTIGFIVKFFIMLYAMFFFFIWGPDSLIN 190

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L       I      V ++T  G+ II + +G ++G A+W+AG+   +  G I
Sbjct: 191 LIRYLP-LTEKDRSHILEKGLSVTKATLKGILIIGVLQGTLVGLAFWIAGIKGAIFWGTI 249

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +++ IP  GAP+ +    IYLL    I  A  + LWG I +  VD  LRP +VG   K
Sbjct: 250 TVVLSAIPGLGAPVVWIPAVIYLLATNQIGWAIGMTLWGIIIVGSVDNILRPRIVGSETK 309

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P L      +GG+   G++G+ +GP++ AL+  +    
Sbjct: 310 MPDLLILLATLGGILMFGMVGVIVGPIIAALLITVLDIY 348


>gi|228903114|ref|ZP_04067250.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 4222]
 gi|228967694|ref|ZP_04128713.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791986|gb|EEM39569.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856523|gb|EEN01047.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 4222]
          Length = 365

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATIAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKTRKLLPNRVHGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 304 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|294056536|ref|YP_003550194.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615869|gb|ADE56024.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 391

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 108/346 (31%), Gaps = 6/346 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
               +    ++   +   +    P+  A I+     P  +   ++   S     ++  V 
Sbjct: 30  IATFFFTFVLLRGFVAAFQDVLLPLAIAAIVATLLRPFVTFLETRTRLSKLHGIILLYVL 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +  V L+ +    + +   L+  +     +     +            +L     + 
Sbjct: 90  VILVCGVALVAVVPATIEQTTRLIKHLPELTTNLSEQLQTRIPEAWAWLEEKLGEPPEAF 149

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ--Q 187
            Q +   +   +K      +       G +F       I  +   F    D    +   +
Sbjct: 150 LQRIIAENSEIIKGGITSSVGSATGLVGDLFGKIAAYSIIPVYLFFILNGDRNIWTDLER 209

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                          ++R    ++ + F G  II +  G+VLG  + L G+   + LG+I
Sbjct: 210 QIDFLPKDRREDLVFLARQFSDILIAFFRGQIIIGLLLGVVLGLGFALVGLKFGLFLGLI 269

Query: 248 TAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             ++ +IP    +          +L   G         +   I   + D    P ++G  
Sbjct: 270 LGLLNIIPYLGTMLGILTVLPLAHLQPGGGTNLIILCSIVFIIGQLLTDYVFTPRIMGDK 329

Query: 305 IKLPFLPTFFGLVGGV-RTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             +  +   F +        G+LG+ +   L A   V W+ +    
Sbjct: 330 TGMGPMLIIFSIFFWGTALGGILGMVLAIPLTAFFLVFWRLAREKY 375


>gi|189218730|ref|YP_001939371.1| Predicted permease, member of the PurR regulon [Methylacidiphilum
           infernorum V4]
 gi|189185588|gb|ACD82773.1| Predicted permease, member of the PurR regulon [Methylacidiphilum
           infernorum V4]
          Length = 350

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 97/346 (28%), Positives = 166/346 (47%), Gaps = 5/346 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTF 61
                +       +  +L++++ L+GF   +  A +I   +WP YS    K         
Sbjct: 6   PTPYQKTARVIASILFVLLAIWILRGFIVAMAWAFLIAIATWPFYSWVRMKLPRNTPLWV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            ++  T+ V  L   PL++  +    E   L   +  A + G P P W   IP   +   
Sbjct: 66  SSLFFTLLVGALLFGPLVYGVFKAGQEAIILGQYIAHAQKEGAPAPDWFQRIP---FIGN 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T   +   +    +   L      F+ R+    G+  +     + F ++ LFF YRDG
Sbjct: 123 WLTVRWNLNLATPEAASKTLAHIDSAFLFRWGKTIGVQVIHRIEVLAFTLLTLFFLYRDG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + ++  +    +     +K ++ +  VIR T  G+ ++++GEG++LG AY + G+P  
Sbjct: 183 RVLGKKFLAFIRKILGTPGEKYAQHLVLVIRGTVNGLVLVSLGEGILLGIAYAIVGLPDP 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LG +T I+AMIP  AP  F   +++LL +G I  A  + ++G   LF+ D  +RP L+
Sbjct: 243 VTLGGVTGILAMIPFAAPPVFCTAALFLLAQGMIIQAIAIVIFGFSVLFVADHFIRPALI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           GG + LPF     G +GG+ + GLLGLF GP ++A + V WK+ + 
Sbjct: 303 GGAVNLPFYWVLLGTLGGLSSFGLLGLFAGPTIIAALLVAWKDFVE 348


>gi|315032078|gb|EFT44010.1| conserved hypothetical protein [Enterococcus faecalis TX0017]
          Length = 366

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 11/342 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 142 FLNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+    +  +  V   V LG++  I  MIP  
Sbjct: 202 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTISLSILNVKFAVTLGILLGICNMIPYF 261

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 262 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 322 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|229163588|ref|ZP_04291537.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           R309803]
 gi|228619838|gb|EEK76715.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           R309803]
          Length = 365

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   +   +L +  G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVVGFYALLYTSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKAHV 351


>gi|172038736|ref|YP_001805237.1| hypothetical protein cce_3823 [Cyanothece sp. ATCC 51142]
 gi|171700190|gb|ACB53171.1| hypothetical protein cce_3823 [Cyanothece sp. ATCC 51142]
          Length = 374

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 135/343 (39%), Gaps = 5/343 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I  ++I  ++      ++ F   +L  +I+    +P++    ++         V+
Sbjct: 20  IVDLLIRLFLIGLLLAWCFLLIRPFLGILLWGIILAIAVFPVFLWLKNRLGGRRKLAGVL 79

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + I P+ F+    +   +     +   +    P P  + + P      +    
Sbjct: 80  LILFGIAVIIGPVSFVATIFVGNAQTFADNLTSGSLKVPPPPEGVENWPIIGNYVDRMWT 139

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S+     +             +  FA   G++ L + LSII   I       +   ++
Sbjct: 140 SASNNLISVLSKFQPQLETIAKNLLFFAGNMGLVLLKFILSIIVAGI----LTINSKQLN 195

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++  +   + P   ++  ++    IR    G+  +++ + L++G  + +AG+P    L 
Sbjct: 196 RRIKRIFIRVTPQQGEEFLQLATATIRGVTRGIIGVSLIQSLLVGIGFTVAGIPLSGLLT 255

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  ++ ++  G         I+         A  L +W  I   ++D  LRP  +   +
Sbjct: 256 VLCLVLCILQIGLGPVVFPSIIFAWYTMGTLKALLLSIW-LIFCTLIDNILRPIFMSQGV 314

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +P L  F G+ GG    G+LGLFIGPV+++L   +    +  
Sbjct: 315 SVPILVIFIGVFGGSLLHGILGLFIGPVVLSLGYELALAWVKQ 357


>gi|145628556|ref|ZP_01784356.1| lipoprotein NlpI [Haemophilus influenzae 22.1-21]
 gi|145639850|ref|ZP_01795451.1| hypothetical protein CGSHiII_03585 [Haemophilus influenzae PittII]
 gi|144979026|gb|EDJ88712.1| lipoprotein NlpI [Haemophilus influenzae 22.1-21]
 gi|145271068|gb|EDK10984.1| hypothetical protein CGSHiII_03585 [Haemophilus influenzae PittII]
 gi|309750345|gb|ADO80329.1| Putative permease [Haemophilus influenzae R2866]
          Length = 349

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 45/348 (12%), Positives = 104/348 (29%), Gaps = 11/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +             L +    +    +
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPENYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +             K+ + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYSL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L     +  ++P    +  T       L   G       + +  A+   +    L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L     ++      G  G+F    L  L+  +       
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 349


>gi|302386575|ref|YP_003822397.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
 gi|302197203|gb|ADL04774.1| protein of unknown function UPF0118 [Clostridium saccharolyticum
           WM1]
          Length = 410

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 40/347 (11%), Positives = 103/347 (29%), Gaps = 17/347 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKE---------------ESSTFLAVIATVS 69
             + G   PV+   ++ +   P+Y+                       SS    +++ + 
Sbjct: 41  KLVIGILMPVIYGAVLAYLLLPVYNKSRDLTNHILSSAWKNENGVKSVSSAMATLVSLIF 100

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHL 127
           +  + +     +       +  L   +           + + +    +      ++ +  
Sbjct: 101 LFVIVVGLFWMIIPEIYNSVMGLQESLGENINDLALWLQKMFEDNPAVEQAVIPIYDRLT 160

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S  Q+          +  I  +        ++  +  + +I M+  L           + 
Sbjct: 161 SQLQNWMTSDLVPNMSMLIGSLSIGLLSVVLVLKNILIGVIVMVYLLNIKGTLSAQCKKI 220

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S+             R V +V      G  + ++  G++         +P  + + VI
Sbjct: 221 IYSVFSVKTANRAIDEIRFVHRVFGGFITGKILDSLIIGIMCFVLLNAMKMPYALLVSVI 280

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +IP   P      S +L++  +        ++  +        L P ++G    L
Sbjct: 281 VGVTNVIPFFGPFIGAVPSAFLILLVSPVKCLYFLIFILLLQQFDGNILGPKILGQSTGL 340

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P     F ++     MG +G+ I     A+   +    +      K 
Sbjct: 341 PSFWVLFSILFFGGLMGFVGMIIAVPTFAVFYSVVSRLVNRSLAKKN 387


>gi|323524830|ref|YP_004226983.1| hypothetical protein BC1001_0461 [Burkholderia sp. CCGE1001]
 gi|323381832|gb|ADX53923.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 358

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 123/347 (35%), Gaps = 8/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +   I   + + L+ L     P L   I+ +   P  +  + ++       A++  
Sbjct: 13  RRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWLVRRRV-PRALAALLMM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L  + +L +F     E  +L  +V +   H     +     P         +   
Sbjct: 72  LLFTLLMTLLVLLVFAVIQKEGPQLRQQVPVLFAHINAWLQ-----PKLALLGLADSLDF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  + L +            +        G + +    ++I + + LF+   D   +  +
Sbjct: 127 ASVRDLVMGQLEGSAQTVARYAWTSIVTSGNVMMTVIGNLILVPLVLFYLLYDWNRMLLR 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++    +     +++R + +++     G  ++     +    A  LAG    + +G+ 
Sbjct: 187 AQAVVPRRWLVKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAVALTLAGFEIALPVGIF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +  A+++       GN +    + +   +   +    L P LVG  I
Sbjct: 247 TGLAVFIPYVGFATGLALALLAALLQFGNWYGFGAVAVIYGVGQIVESFFLTPRLVGERI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  L   F L+   +  G  G+ +   + A+++V  +E   +  E+
Sbjct: 307 GLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAVRELRQSYLES 353


>gi|325497136|gb|EGC94995.1| inner membrane protein [Escherichia fergusonii ECD227]
          Length = 372

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/349 (17%), Positives = 135/349 (38%), Gaps = 6/349 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F   +  A  +   +WP+            +
Sbjct: 7   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGITWAGTVVIATWPVLLRLQKILFGRRS 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 67  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 127 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHLGR----FMVHCALMLLFSALLYWR 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 183 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 243 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 302 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFAAWVDEV 350


>gi|229076099|ref|ZP_04209067.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-18]
 gi|229099057|ref|ZP_04229991.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-29]
 gi|229118087|ref|ZP_04247446.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-3]
 gi|228665310|gb|EEL20793.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock1-3]
 gi|228684285|gb|EEL38229.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-29]
 gi|228706962|gb|EEL59167.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-18]
          Length = 346

 Score =  120 bits (300), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 112/330 (33%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG- 145
                L+  V +     +      +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVKFAEQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 146 ---------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  I    + F          ++F+++A FF   D   ++Q+   L  +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYDWHRLAQKARKLLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               +     +  +            L   I + +  + + P ++   I L  L T   L
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVAL 300

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             G +  G LGL IGPV + L+  + K  +
Sbjct: 301 FIGFKLFGFLGLIIGPVTLVLLNTLHKAHV 330


>gi|21219049|ref|NP_624828.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|289773819|ref|ZP_06533197.1| integral membrane protein [Streptomyces lividans TK24]
 gi|6066628|emb|CAB58273.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|289704018|gb|EFD71447.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 363

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 120/351 (34%), Gaps = 14/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++ + L  L  +     P+L  L++   +WP       +        A + TV
Sbjct: 23  ELLLILVMLAVTLWVLGRMWSVVWPLLVGLLLTTLTWPPARFL-RRHGWRPALAATVVTV 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + + +  +  +      +  EL   VV   Q                WA+        
Sbjct: 82  AFLLVVLGIVALIAVPMSSQTDELTDGVVEGIQRLRE------------WAAGPPLNIGD 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  + S      + +  I    +      ++  ++ +  +  +FFF +DG      L
Sbjct: 130 DEITGAMDSAVARIQDSVGSITTAVATGVGAVVNGLITAVLGVFLMFFFLKDGPRFLPWL 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++    + + S      ++ + + + +G   W+ GVP  + L V+T
Sbjct: 190 ARQLPGRLATDVPVVALRGWETLGSFVRSQALVGLLDAVFIGLGLWILGVPLVLPLAVLT 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + +A  +     +   +     +P L    + L
Sbjct: 250 FVSAFVPIVGALFAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPILQSRGLGL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                   +  G    G++G  +     ALIAV+W      + E  E  ++
Sbjct: 310 HAAVILLAVTLGGSLSGIVGSLLAVPFAALIAVVWTYVREQLSERPEATAT 360


>gi|308186662|ref|YP_003930793.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
 gi|308057172|gb|ADO09344.1| UPF0118 inner membrane protein ydiK [Pantoea vagans C9-1]
          Length = 372

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 138/355 (38%), Gaps = 7/355 (1%)

Query: 3   ETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
             M  PQ +     I+ +I+  L+ ++ F      A ++   +WP+   F        + 
Sbjct: 7   RDMDLPQILFTLMFILLLIVACLWVVQPFILGFAWASMVVIATWPLMLKFQRLLWGRRSL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++ T+ ++ LFI+P+  L    +     +++ V   +     +      + G      
Sbjct: 67  AVIVMTMLLLLLFIIPIALLVSSLIDNSAPVIAWVTQGHTMPQLLWLRDVPMVGKKLYVS 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T   S    +    + ++      F+ +        F  + + +  M++     Y  G
Sbjct: 127 YDTLVASGGAGIMAKIQPYIGRTTGFFVAQ-----AGHFGRFMIHLGVMLLFSVLLYWRG 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              +Q +      +          +  + IR+  LG+ + A+ +G++ G    ++G+P  
Sbjct: 182 EQAAQGIRHFAFRMAGRRGDAAVLLAAQSIRAVALGVVVTALVQGVLGGIGLAISGIPYA 241

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  +  ++  G  +      IYL   G+    T L +W  +    +D  LRP L+
Sbjct: 242 TLLTVLMILCCLVQLGPLLVLVPAIIYLYWSGDTTWGTVLLVWSCVV-GTMDNVLRPMLI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                LP +    G++GG+   G++GLFIGPV++A+   +    +          
Sbjct: 301 RMGADLPMILILSGVIGGLFAFGMIGLFIGPVVLAVSYRLVSVWVHEAPAPDNDP 355


>gi|71274561|ref|ZP_00650849.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71901343|ref|ZP_00683438.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|170730816|ref|YP_001776249.1| permease [Xylella fastidiosa M12]
 gi|71164293|gb|EAO14007.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71728887|gb|EAO31023.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|167965609|gb|ACA12619.1| permease [Xylella fastidiosa M12]
          Length = 385

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 129/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +  ++++  +L   + L     P + ++ +G+   P+   F      S          
Sbjct: 14  RRLKWYVLVGGVLWMAWLLTPVLIPFVLSVFLGWLGDPLVKRFE-WAGVSRAMAVCFVFF 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++ L+        ++  L++     +     V   +         S+L T    
Sbjct: 73  LVVLLLVLVLMIFVPLIERQVVTLINTFPQMHDW---VVNTVIPWVEQKTGSQLRTWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S           +  + SR G + + + +++  + I  F+F RD     +++
Sbjct: 130 EQMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILGFYFLRDWDKWVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +     +++    +V+ +   G  ++ +  G +      L G+   + +G+I 
Sbjct: 190 AAAIPRAYIGTVSRLATEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLKLGLLIGLIA 249

Query: 249 AIMAMIPGGAPISFT----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP    I+         I  +   ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G +G+ +     A++ V+ + +     E++
Sbjct: 310 IGLHPVAVIFSVMAGGQLFGFVGMLLALPGAAVVNVLLRYAHGRYIESE 358


>gi|266619736|ref|ZP_06112671.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288868696|gb|EFD00995.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 376

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 112/339 (33%), Gaps = 1/339 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                   I   ++  I L  +  L   F P L  L +     P+      +       +
Sbjct: 17  RKRFITNVIYFVILGGIFLFVMKRLVPMFFPFLLGLTVAAVLSPLIRKLCGRTGGKRAPV 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           ++   +    + ++  LF   + +  ++ L  K+       I     +      +   E 
Sbjct: 77  SIAVLLVFYGILVMAALFSASHIVAFIQNLAGKLPQFYMEVIEPELGILFERIVVSFPEY 136

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    SL+   ++ + T     I   AS     F    +  IF II+ FFF  D  
Sbjct: 137 QDWLSQMSASLENALQSGIMTVSGTLIGWGASWIV-GFPAILVQTIFTIISSFFFTIDYD 195

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   +    +        + +      I        ++       L   + L  +P  +
Sbjct: 196 RIWDFVLRQFKEERRKMIAETAAGARTTIWKILKVYALMMTITFAELYLGFVLLKIPMPL 255

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  + A++ ++P     +       +L                + + IV +TL P ++G
Sbjct: 256 LLAFLVAVVDILPVLGTGTVLIPWALILCIIGKTGLGVGIFILYVIITIVRQTLEPKVIG 315

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + L  + T   +  G + +G+LG+F  PV+  ++  +
Sbjct: 316 QQVGLHPIVTLLCIFAGAQLIGVLGIFTFPVIATIVKKM 354


>gi|229174027|ref|ZP_04301563.1| hypothetical protein bcere0006_31210 [Bacillus cereus MM3]
 gi|228609359|gb|EEK66645.1| hypothetical protein bcere0006_31210 [Bacillus cereus MM3]
          Length = 376

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEV----ERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPSMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|161614223|ref|YP_001588188.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363587|gb|ABX67355.1| hypothetical protein SPAB_01967 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 360

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/348 (18%), Positives = 130/348 (37%), Gaps = 5/348 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +    +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ +
Sbjct: 3   LSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLL 62

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + LF++P+  L    +     L+  V   +     +    +    G      W   L   
Sbjct: 63  VLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMG 122

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S  +            +    A+  G     + +    M++     Y  G  ++  +  
Sbjct: 123 GSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWRGEQVAMGIRH 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +
Sbjct: 179 FACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMIL 238

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++  G         I+L   G+    T L +W A+   + D  +RP L+     LP L
Sbjct: 239 SCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVLIRMGADLPLL 297

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 298 LILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 345


>gi|170741713|ref|YP_001770368.1| hypothetical protein M446_3553 [Methylobacterium sp. 4-46]
 gi|168195987|gb|ACA17934.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 647

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/333 (10%), Positives = 83/333 (24%), Gaps = 21/333 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P+  A+ + F   P   +    +      + ++  ++        L  +      
Sbjct: 38  REILVPITLAIFLSFVLVPAVRALRRLRIPRVPAVLLVVLLAF-----GALGTVGSLLAG 92

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E  +L + +   +       + L     G          ++                   
Sbjct: 93  EAAQLAADLPRYSLTMRDKIKLLQGATAGGGGVSRLLDMVADLSRELQPPPEPKDRAAPA 152

Query: 148 --------------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          +      +    L    +   +++           +  +   L  
Sbjct: 153 AGTPLKVEVVEARPSVLAALGTYAAPVLHPLATTGLILLFSVVILLQREDLRNRAIRLAG 212

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                            +   FL    +    G+V+G   W+ G+PS V  GVI  I+  
Sbjct: 213 SGDLRRTTAAIDDATARLTRFFLAQLGLNTAFGVVIGLGLWIIGIPSPVLFGVIAGILRF 272

Query: 254 IPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P    +    + + L                   +   +    + P L G    L  + 
Sbjct: 273 VPYIGAVIGALLPLVLAAAVDPGWTMVLATAALFLVVEPVAGHVVEPLLYGHSTGLSPVA 332

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                       G +GL +   L   + V+ + 
Sbjct: 333 VILAATVWAFLWGPVGLVLATPLTVCLVVLGRH 365


>gi|310641211|ref|YP_003945969.1| sporulation integral membrane protein ytvi [Paenibacillus polymyxa
           SC2]
 gi|309246161|gb|ADO55728.1| Sporulation integral membrane protein YtvI [Paenibacillus polymyxa
           SC2]
          Length = 372

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/354 (12%), Positives = 115/354 (32%), Gaps = 10/354 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++  +L+ +Y L     P L A ++ +   P+     +K          ++  
Sbjct: 11  RALWVVIVIVALLLGIYVLFPLVYPFLFAWLVAYAMNPLVVFLHNKARMPRWAAVTVSLF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV----------PRWLSDIPGGMW 118
             +    + L       + E+ +L        +    +             + +I   + 
Sbjct: 71  VYLGGIAIILSAAITRMVREVIKLAMTFDGHIERFKSLFIDWTQSDLIQNIIIEINHFIR 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +  +   ++        + +   T  +               +    ++ ++++ FF  
Sbjct: 131 DNPDYQHTINSNIDKTTQTVSSAVTTLVGQFFNGVLNLLTSLPNMGAVLMVIVLSAFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     + L +            I   + K +        II     L +    ++  V
Sbjct: 191 KDWDRHYRILSNTVPDTIRKPLSDIWHDLRKALYGYLRAQFIIISITALTVIIGLFILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            S   +G++  ++ ++P           I                     L I  + + P
Sbjct: 251 ESAFTIGLMIGLVDLLPYLGVGIVMIPWILYAYMSGNLALGVGLSILYAILLIGRQIVEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++   + L  LPT  G+  G++  G LGL IGPV + ++  + + +++    N
Sbjct: 311 KVLASSVGLNPLPTLIGMFIGLKLFGALGLIIGPVSLIVLDALNRANVIQDLRN 364


>gi|222096816|ref|YP_002530873.1| hypothetical protein BCQ_3156 [Bacillus cereus Q1]
 gi|229197465|ref|ZP_04324192.1| hypothetical protein bcere0001_30100 [Bacillus cereus m1293]
 gi|221240874|gb|ACM13584.1| membrane protein, putative [Bacillus cereus Q1]
 gi|228586089|gb|EEK44180.1| hypothetical protein bcere0001_30100 [Bacillus cereus m1293]
          Length = 376

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|228940410|ref|ZP_04102980.1| hypothetical protein bthur0008_30580 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973326|ref|ZP_04133915.1| hypothetical protein bthur0003_30860 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979889|ref|ZP_04140210.1| hypothetical protein bthur0002_30620 [Bacillus thuringiensis Bt407]
 gi|228779904|gb|EEM28150.1| hypothetical protein bthur0002_30620 [Bacillus thuringiensis Bt407]
 gi|228786522|gb|EEM34512.1| hypothetical protein bthur0003_30860 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819252|gb|EEM65307.1| hypothetical protein bthur0008_30580 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 376

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|312135146|ref|YP_004002484.1| hypothetical protein Calow_1121 [Caldicellulosiruptor owensensis
           OL]
 gi|311775197|gb|ADQ04684.1| protein of unknown function UPF0118 [Caldicellulosiruptor
           owensensis OL]
          Length = 354

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 113/352 (32%), Gaps = 10/352 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +   I    I+     ++        P L AL + +   P      +K   S   
Sbjct: 8   KRYFTDILFIAIIAIVIYFFANMKAFWPILIPFLIALFLSYLLKPCVDFLETKIR-SRDI 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I    +  + ++  ++     + E K+L+  V                         
Sbjct: 67  SILIWFAIIFGITVMVCVYFIPLFVNETKQLIQNVPEYIALIQKWF---------YEIDS 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L+      + + +                         L  + + I  F+  RD 
Sbjct: 118 KLLNKLNIDIKEILNANSINTEAVSKQTLSIFLNIVKSISSNILYYLLIPIISFYILRDW 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  L    +      I   + +V+     G  + A+  GL+    + L  V   
Sbjct: 178 KRLVMWIKWLLPEKYRKEGLYIFADINRVLHQYIRGQLLDAVIVGLLSFFGFSLLSVRYA 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LGVIT I  +IP   PI  +  ++ + +  +   A  + ++  +   +    + P ++
Sbjct: 238 ALLGVITGIGNLIPYFGPIFSSIPAVIIALSDSYIKAILVVVFLVLLQQVDSFIISPRVI 297

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  + L  L     ++   +  G + +F    + A+I +I+   +  IK  K
Sbjct: 298 GSKVGLHPLTIIIVIILANKIFGFVAMFFAIPIAAVIKIIFINIMKRIKSEK 349


>gi|89094851|ref|ZP_01167784.1| membrane protein, PerM family protein [Oceanospirillum sp. MED92]
 gi|89080906|gb|EAR60145.1| membrane protein, PerM family protein [Oceanospirillum sp. MED92]
          Length = 363

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 114/351 (32%), Gaps = 12/351 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               + + ++ ++++   L+ +  L    APV + +I+ F      +    +        
Sbjct: 11  RYFSDEEALLLFVLLGASLIVILTLGQALAPVFAGIILAFLMQGGVNRL-RQLNVPHLLS 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++  ++ +      LL +      +   L +++         V   L +   G  + E 
Sbjct: 70  VILVFLAFVGGLGALLLIVMPLAWKQSVNLFNELPGIMSEIQSVLLLLPERYPGFISEER 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + ++   +          +    ++  F+       +   + ++ + I +FFF +DG 
Sbjct: 130 VLELINLAAAEL--------SQMGQWVVTFSLNSITSIIALLIYLVLVPILVFFFLKDGS 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           S+++   S           ++   +   I +   G  I  I  G V    +   G+    
Sbjct: 182 SLTRWWVSFLPEK-RDMMTQVWHEMDDQIANYIRGKVIEIIVVGSVTYITFIFLGINYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LG++  +  +IP       T     +     G       L +   I   +    L P L
Sbjct: 241 LLGILVGLSVLIPYIGAALVTLPVALIGFFQWGWSSEFMYLMIAYGIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               + L  +     ++      G  G+F    L  L   I      A ++
Sbjct: 301 FSEAVNLHPVAIIVAVLVFGGLWGFWGVFFAIPLATLFKAILSAWPKAKQQ 351


>gi|47564492|ref|ZP_00235537.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|228986432|ref|ZP_04146568.1| hypothetical protein bthur0001_31140 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|47558644|gb|EAL16967.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|228773253|gb|EEM21683.1| hypothetical protein bthur0001_31140 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 376

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|284045779|ref|YP_003396119.1| hypothetical protein Cwoe_4330 [Conexibacter woesei DSM 14684]
 gi|283950000|gb|ADB52744.1| protein of unknown function UPF0118 [Conexibacter woesei DSM 14684]
          Length = 358

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 118/350 (33%), Gaps = 15/350 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +        ++       G    +  A ++     P+ S+ + +        AV+   
Sbjct: 17  RTLFTVAAFGAVVALAILSLGSLLSIFVAGVLALGLDPVVSALVRR-GWKRGPAAVVVLA 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           SV    ++ +L        ++++ ++++    +                  S  + + +S
Sbjct: 76  SVFAAVVLIVLIAVGPLWDQVRDFIAEIPRYWEELTN--------------SAAFQRLIS 121

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +       T G+                  LS++ +     F   +  +I+  L
Sbjct: 122 SGTQSDVSEALKDLTAGLPEAASTLLGAAGGIFGSLLSMVTLTFLALFLLMERPAITGWL 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                      W  +       I S+ +G   I++    V G + WL G+P  + L VI 
Sbjct: 182 FGFAPPEVEQRWHPVLEDSISAISSSLIGNVAISLVAATVAGLSSWLFGLPFPIVLAVIV 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP         + + + +  +   A  + +   +   + +  + P +    ++L 
Sbjct: 242 GLLDLIPQVGATIAAVILVAVALTVSTEAAIAMLVIQLVYQQVENYVVYPLVYRRAVELT 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              T   ++     +G++G  +     A+I ++ +E+    +E  + +  
Sbjct: 302 AFTTIVSVLVASSILGVVGAILAVPFAAVIKIVVREAGRPRRERMDALRE 351


>gi|332141566|ref|YP_004427304.1| putative permease [Alteromonas macleodii str. 'Deep ecotype']
 gi|327551588|gb|AEA98306.1| putative permease [Alteromonas macleodii str. 'Deep ecotype']
          Length = 357

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/358 (15%), Positives = 103/358 (28%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P   M  +++ +    L        PVL A +I +         ++      T 
Sbjct: 10  RRKFSDPDAAMLLILILLTTAVLLLWGELIMPVLVAAVIAYLLDWPVCRLVN-VGLGRTI 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + I+ L+ L      +   L+ +  L  Q        L D         
Sbjct: 69  ACGIVMVGFITITILTLVGLVPIISKQSVNLIQETPLIWQKAQEWILTLPDKYPDYVQVS 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +       +     L +     I   A           + +I + + +FF  +D 
Sbjct: 129 QIHQMMEGINEKLVEVGETLISASFSNIANLA--------ALLVYVILVPLMVFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 +  L          ++   +   I +   G  I  I  G+V    + L  +   
Sbjct: 181 LFFLDGISRLLP-KERRLITQVGHEMNSQIANYIRGKVIEIIIVGVVSCVTFVLMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPF 299
           + LGV+     +IP       T     + +     +     L +   I   +    L P 
Sbjct: 240 ILLGVLVGFSVLIPYIGAAVVTIPVAVVAMFQWGISPEFWYLMIAYGIIQALDGNLLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    + L  L     ++      G  G+F    L  L+  +            E+  
Sbjct: 300 LFSEAVSLHPLYIIVAVLVFGGLWGFWGVFFAIPLATLVKAVVTAWSSNPVVIPEEAK 357


>gi|229031038|ref|ZP_04187052.1| hypothetical protein bcere0028_30950 [Bacillus cereus AH1271]
 gi|228730284|gb|EEL81250.1| hypothetical protein bcere0028_30950 [Bacillus cereus AH1271]
          Length = 376

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPSMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|229072098|ref|ZP_04205307.1| Sporulation integral membrane protein YtvI [Bacillus cereus F65185]
 gi|228711032|gb|EEL62998.1| Sporulation integral membrane protein YtvI [Bacillus cereus F65185]
          Length = 365

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATLAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 304 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|229087153|ref|ZP_04219302.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-44]
 gi|228696125|gb|EEL48961.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock3-44]
          Length = 364

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 122/348 (35%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   I   +L ++ G   P + AL   +   P+ +    K +       +++ +
Sbjct: 3   RLIFVILATIIGFYALLYVSGLIYPFIIALAFAYLINPVVNFLNQKLQFPRALAVLVSLI 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V       +   +  +         +L ++   
Sbjct: 63  LVFGAIVGLVTYLVTEAISATTYLLQIVTEKFPTIVQYAQQFALNHIMPLYDDLISQFNH 122

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +S +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 123 LGESQQYTITQNIQNLGTEATKQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 182

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 183 FDWHKLANKMKQLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTIIVLIGLLILRV 242

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT I+ ++P     +     +  +            L   I + +  + + P
Sbjct: 243 PYAITIAIITGIVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 302

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  LPT   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 303 KVLSSNIGLDPLPTLIALFVGFKLYGFLGLIIGPVTLVLLNTLHKARV 350


>gi|226355657|ref|YP_002785397.1| hypothetical protein Deide_07790 [Deinococcus deserti VCD115]
 gi|226317647|gb|ACO45643.1| Conserved hypothetical protein; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 372

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 104/335 (31%), Gaps = 9/335 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               ++        A +I + + P+ +    +             +  + +F +  + L 
Sbjct: 34  LFSQVRTVVVDFAVAFLIAYLTNPLLNWLQ-RGRVRRGLGVFFVLLVFIGIFGLAGMLLA 92

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++ +L  K+              S   G      L         S +   +   +
Sbjct: 93  -TVSGQLVQLFEKLPDLIGTFGQTLDRWSQWLGERGIGGLDNVRERLIASAQEYVQNIGQ 151

Query: 143 T-----NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                               +        ++ +++   +   D   ++  +       + 
Sbjct: 152 NIVPILQNALNSSGTLFNSLLSIGGIFGHVLLILLLSVYLMLDYSRVNSAILHAFPRPWQ 211

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               ++S +V   +     G  +IA   G+ +     LAG+PS  A+G +     ++P  
Sbjct: 212 PRILELSDLVGTAVGGYVRGQLLIAAFIGVFVWLGLSLAGIPSAAAIGFLAGAFNIVPYL 271

Query: 258 APISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            PI     ++ L +     +     + +  A    I    L P+++     L  +     
Sbjct: 272 GPIIGATPALLLALTLPNVVLKIILVVVVFAAANQIESNVLSPYILSKTTDLHPITVLMA 331

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++ GV  MG  G  +    +AL+ ++ ++     +
Sbjct: 332 ILVGVALMGFAGALLAVPTVALVKLLLQKYYYPSR 366


>gi|197121536|ref|YP_002133487.1| hypothetical protein AnaeK_1125 [Anaeromyxobacter sp. K]
 gi|196171385|gb|ACG72358.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. K]
          Length = 359

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 104/342 (30%), Gaps = 16/342 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +      L+  +    P      +  +  P+ ++   +   S T  A+  T+ 
Sbjct: 20  RALTLLAVAAGFGFLWLARDLLVPTALGATLALSVHPVVAALERR-GLSRTLAAIAGTLL 78

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +                  L  ++    Q        L +   G+       +  S 
Sbjct: 79  TVAVLAAIGWV-----------LWDRIAAFAQELPGYEGRLREAAAGIRRHAAHLQAQSE 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +K                  L        ++  L+F   +G     +L 
Sbjct: 128 QLVQAPRRPGEVKVQETVPWGTLLVGTAQGALTLAGQATVVVFVLYFTLAEGPRFRVKLL 187

Query: 190 SLGEHLFPAYWKKI--SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +       + +     + + +    L    +    G+V  + Y L G+      G+ 
Sbjct: 188 AWADRRPRGRARLLAALEELHRDVEQYMLNRVALNAILGVVTWAVYALYGLEHAAIWGIT 247

Query: 248 TAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           TA++  IP   P        ++ LL  G   +   +     + + +    + P  +G  +
Sbjct: 248 TALLHFIPYVGPALGLFLPTAMALLQYGTAKDVALVAAIYLVLVNVQGNVVDPLFLGKQL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +L  L  F G +      G +GLF+   L++ + ++ +    
Sbjct: 308 RLSPLVVFLGSLFWFWLWGPVGLFLAVPLLSTVRIVCRHLPR 349


>gi|160894664|ref|ZP_02075439.1| hypothetical protein CLOL250_02215 [Clostridium sp. L2-50]
 gi|156863598|gb|EDO57029.1| hypothetical protein CLOL250_02215 [Clostridium sp. L2-50]
          Length = 495

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 46/329 (13%), Positives = 103/329 (31%), Gaps = 21/329 (6%)

Query: 32  APVLSALIIGFTSWPIYSSFISK----------------KEESSTFLAVIATVSVMCLFI 75
           AP++   +I F   P+   F                      S     +I  +  + L  
Sbjct: 58  APIIIGFVIAFLLNPVLIFFDRLCHTILQDRVIKDKKKLFHVSRAISIIITIILFLGLLT 117

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW-TKHLSHPQSLK 134
             +  +    +  +  L+S +     + +     + D    +  SE      ++      
Sbjct: 118 GLIWMVVPQVIDSINLLISNMDNYYNNIMKAINTIYDKFKNLGESEEMVMNVVNTVYDRL 177

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +D I    S   +  L +  + +  I+A  +   +   ++ +   +   
Sbjct: 178 QKWVNTDVVPNLDKIVLNISSGVVGGLKFIYNFLIGIVASIYVMANKEYLASRGKKIVYA 237

Query: 195 LFPAYWKKISRI----VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           LF      I       V K+      G  + +I  G++      +  +P  + + VI  +
Sbjct: 238 LFKLKNANIILDGLASVNKIFSQFINGKIVDSIIIGIITFILTTIVDMPYALLISVIIGV 297

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP   PI      +++++  +   +  L +            L P ++G    L   
Sbjct: 298 TNVIPFFGPIIGAIPCVFIVLIADPIKSIILLIMILCIQQFDGNILGPKILGDVTGLSSF 357

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                ++ G    G  G+ +G  + A I 
Sbjct: 358 WVLTAVIVGGGIFGFYGMLLGVPVFACIY 386


>gi|306817850|ref|ZP_07451589.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
 gi|304649329|gb|EFM46615.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
          Length = 478

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 99/335 (29%), Gaps = 17/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +     F ++  L+ +   F P   AL +  T  P+    I + +  +   A++  V
Sbjct: 76  RYALALAGTFAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLIRR-KVPAALAALLNIV 134

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + +     +         EL                 L  +           +   
Sbjct: 135 LMFAVMLGVTGMIAGALTAVTTELPRYQRKFQILYQDSIHLLEKL---------GDRFNI 185

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+   ++         +    A+  G          +  I  +          ++  
Sbjct: 186 DMSSVTSPAQRVDLGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELA 245

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +        R   +  R  FL  T    G  ++     ++  VPS +  G++ 
Sbjct: 246 T------YAPGLAISLRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILA 299

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       + +L+   +  A  + +   +   +V   ++P   G  + L
Sbjct: 300 FVANYIPAVGFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGL 359

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +F  L+     +G LG  +   +   I  I+
Sbjct: 360 NPTISFLSLMVWSAVLGPLGAVVSVPMTLFIKAIF 394


>gi|284165881|ref|YP_003404160.1| hypothetical protein Htur_2610 [Haloterrigena turkmenica DSM 5511]
 gi|284015536|gb|ADB61487.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 370

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 131/355 (36%), Gaps = 11/355 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M         +++ + ++S   +      VL+A ++ F   P +     K        A+
Sbjct: 1   MDLRTAFFALLLVVLGVLSALVIAPLLQYVLAAGLLAFVLRPAHERLEPKLGPRP--SAI 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T   +   ++PLL +    +      +++   A+                     L  
Sbjct: 59  LLTGVAVVAAVIPLLLISAVVLGTAVSFLNEFDEASVVESA-------RGVAENDLGLEA 111

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +   ++          ++ ++       R     L+  + +   +  L++   DG  +
Sbjct: 112 QQIDAIEAAIHTEIESSLSSAVELALGELIRLVNAGLELAIGLAVCVFLLYYLLVDGDDL 171

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L  +   L P    ++   V  V  +      ++A+ +GL+ G    + G+P+    
Sbjct: 172 VAWLGDVAP-LEPHVRDELFGEVRVVTWAVIHSHVLVAVVQGLLGGIGLAVVGIPNAAFW 230

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VI  +++ +P     + +   + YL   G+   A  L  +G   L +VD  LR   V  
Sbjct: 231 TVIMILLSFLPAIGVWLVWGPAAGYLATAGDPLAAVALLAYGLTILGLVDNYLRAIFVDR 290

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              L       G++GG+  +G++GLF+GPVL+A+             E+  + + 
Sbjct: 291 GSGLHPAAVIVGVIGGIYLLGVMGLFLGPVLLAVFKAGVNVFTRVSVEDGNQWTD 345


>gi|229097812|ref|ZP_04228765.1| hypothetical protein bcere0020_30500 [Bacillus cereus Rock3-29]
 gi|229103884|ref|ZP_04234562.1| hypothetical protein bcere0019_30350 [Bacillus cereus Rock3-28]
 gi|228679452|gb|EEL33651.1| hypothetical protein bcere0019_30350 [Bacillus cereus Rock3-28]
 gi|228685569|gb|EEL39494.1| hypothetical protein bcere0020_30500 [Bacillus cereus Rock3-29]
          Length = 376

 Score =  120 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVANIVKDYTVDFTKSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   P+     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPVIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIVLAIPGYAILKVLVTH 367


>gi|30263317|ref|NP_845694.1| hypothetical protein BA_3410 [Bacillus anthracis str. Ames]
 gi|49186166|ref|YP_029418.1| hypothetical protein BAS3161 [Bacillus anthracis str. Sterne]
 gi|49479012|ref|YP_037468.1| permease [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|50196948|ref|YP_052638.1| hypothetical protein GBAA_3410 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|118478647|ref|YP_895798.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|228915962|ref|ZP_04079537.1| hypothetical protein bthur0012_31800 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928408|ref|ZP_04091449.1| hypothetical protein bthur0010_31070 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228934640|ref|ZP_04097474.1| hypothetical protein bthur0009_30950 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228946985|ref|ZP_04109282.1| hypothetical protein bthur0007_31160 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229092314|ref|ZP_04223486.1| hypothetical protein bcere0021_30950 [Bacillus cereus Rock3-42]
 gi|229122890|ref|ZP_04252098.1| hypothetical protein bcere0016_31810 [Bacillus cereus 95/8201]
 gi|229185596|ref|ZP_04312775.1| hypothetical protein bcere0004_31480 [Bacillus cereus BGSC 6E1]
 gi|30257951|gb|AAP27180.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|49180093|gb|AAT55469.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49330568|gb|AAT61214.1| conserved hypothetical protein, possible permease [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|50083010|gb|AAT70146.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|118417872|gb|ABK86291.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|228597826|gb|EEK55467.1| hypothetical protein bcere0004_31480 [Bacillus cereus BGSC 6E1]
 gi|228660474|gb|EEL16106.1| hypothetical protein bcere0016_31810 [Bacillus cereus 95/8201]
 gi|228691016|gb|EEL44783.1| hypothetical protein bcere0021_30950 [Bacillus cereus Rock3-42]
 gi|228812717|gb|EEM59041.1| hypothetical protein bthur0007_31160 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228825033|gb|EEM70831.1| hypothetical protein bthur0009_30950 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228831455|gb|EEM77051.1| hypothetical protein bthur0010_31070 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843780|gb|EEM88854.1| hypothetical protein bthur0012_31800 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 376

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|229916029|ref|YP_002884675.1| hypothetical protein EAT1b_0297 [Exiguobacterium sp. AT1b]
 gi|229467458|gb|ACQ69230.1| protein of unknown function UPF0118 [Exiguobacterium sp. AT1b]
          Length = 366

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 127/363 (34%), Gaps = 18/363 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKG--------------FFAPVLSALIIGFTSWPIYSSF 51
           LN Q I +  ++ +IL+ L+ +                   P++  + I      + S  
Sbjct: 3   LNRQLIWKLSVIGLILLVLWRVISEPDTISRVLQYTFQLLTPIIMGIAIALLLNTVLSYI 62

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
             +         +I  ++ + +  + ++ LF      +  L++++ +  +        ++
Sbjct: 63  EERFHLKRYQGLLIVYITFIGILAISVVTLFPRIYSSLSSLINELPVYIRQIDVFLGEVN 122

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           +      A+       +  +       +      +     + S F M  +++ + I+  I
Sbjct: 123 NYLKDYNATIAQAIDFARFED----RYSGWVETAVLSSVSYVSSFTMTLINFLIGIVISI 178

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             L           + L +L           I + +  + +   +G ++  +  G++   
Sbjct: 179 YLLKDKEVFARMFKRLLYALLPVGTAKTTIDIFQEMDYIFKRYIIGKSLDCLIIGVLAVI 238

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
              + G P  + LGVI  ++  IP   P+     +  +    + F A  + L+  +    
Sbjct: 239 GLLIIGAPYALLLGVIVGVLNFIPYVGPLLGMIPAFIITYFYDPFTAVLVLLFIFLLQQF 298

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L P ++G  + +        ++ G    GL+G+F+   + A+I V+    I     
Sbjct: 299 DGLWLGPKILGDSVGITPFWVITSIIIGGSLFGLIGMFVSVPITAMIQVVLSRLIDYRLN 358

Query: 352 NKE 354
            K 
Sbjct: 359 RKN 361


>gi|162147751|ref|YP_001602212.1| putative inner membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542376|ref|YP_002274605.1| hypothetical protein Gdia_0192 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786328|emb|CAP55910.1| putative inner membrane protein [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209530053|gb|ACI49990.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 358

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 145/340 (42%), Gaps = 3/340 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +M  ++  +       L  F + +L A I+ F +WP++     +        A+ 
Sbjct: 1   MAERIMMGLLLGGVAFGCGAILYPFMSALLWAAILTFATWPLFIRLRRRTG--PVTAAIG 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            TV    +  +PL  +    + ++      +       I +P     +           K
Sbjct: 59  MTVLSALVVALPLAVVVSTSIADLPGTFEGLAETLARLIHLPAPPPWLARIPHFGPDLAK 118

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   +    +E  L       I +      M      + +   +   FFF+  G S+ 
Sbjct: 119 IWTQWATDLGHAERMLL-PYTGSIAQSMLAGLMQVASGLVHLGMALFIAFFFWLGGDSLG 177

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               ++   +  +Y  +I  I+ + IR T  G+   AI +G++ G  + L G+P  V  G
Sbjct: 178 GTFSAVIRRIAGSYADRILSIIGRTIRGTVYGILGTAIVQGVLTGLGFALTGLPEPVLFG 237

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +ITA +A++P GAP+ +   ++ L++  +      L ++G + +   D  +RP  +    
Sbjct: 238 LITACVAVLPIGAPLIWIPGALALILTHHPGWGIFLVVYGVLIISGADHIIRPMFISRGA 297

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +LP+L T  G++GGV T G LG+F+GPVL+ +   +  E 
Sbjct: 298 QLPYLLTVLGVLGGVWTFGGLGIFLGPVLLGVGYTLTAEF 337


>gi|148825479|ref|YP_001290232.1| hypothetical protein CGSHiEE_01890 [Haemophilus influenzae PittEE]
 gi|148715639|gb|ABQ97849.1| hypothetical protein CGSHiEE_01890 [Haemophilus influenzae PittEE]
          Length = 349

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 104/348 (29%), Gaps = 11/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  +  L L      +   L+S +             L +    +    +
Sbjct: 71  TILIFGSFIGLAAIFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPENYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +             K+ + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYSL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L     +  ++P    +  T       L   G       + +  A+   +    L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L     ++      G  G+F    L  L+  +       
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 349


>gi|325579227|ref|ZP_08149183.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
 gi|325159462|gb|EGC71596.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
          Length = 348

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 104/346 (30%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +++YF     AP+L A+++ +      +    K +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFIAIYFFSDLIAPLLIAIVLAYLLEMPINFLTKKLKFPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I     + L ++    L      +   L+S +             L +    +    +
Sbjct: 71  TLIIFGGFLTLALLIFFGLVPTLWNQTISLLSDLPAMFNKLHEWLLALPEHYPELIDYTM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                S  ++  +          I  +               +    + + +FF  +D  
Sbjct: 131 IDTFFSAARAKILGFGESAVKLSITSLMNLV--------SLGIYAFLVPLMMFFMLKDKT 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +             K+   + + I +   G  +  +  G+V    +   G+   +
Sbjct: 183 ELLAGVSRFLP-KNRLLASKVWNEMQQQIANYIHGKLLEILIVGVVTYIIFLSFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V   +  ++P    +  T     +     G       L +  A+   +    L P+L
Sbjct: 242 LLSVAVGLSVLVPYIGAVLVTIPVALVAMFQFGISPTFWYLIVAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  L     ++      G  G+F    L  L+  +     
Sbjct: 302 FSEVVNLHPLVIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALP 347


>gi|157370415|ref|YP_001478404.1| hypothetical protein Spro_2175 [Serratia proteamaculans 568]
 gi|157322179|gb|ABV41276.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 366

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/357 (19%), Positives = 136/357 (38%), Gaps = 6/357 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L         I  +I+   + ++ F      A ++   +WP+            +  
Sbjct: 7   RYDLPRIIFGVLFIAIMIVACFWVIQPFILGFAWAGMVVIATWPLLIKLQKILWGRRSLA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            ++ T+ ++ LFI+P+  L    +     +V+      +  IP   WL  IP  G     
Sbjct: 67  VLVMTILLILLFILPISLLVSSVVDNSAPIVAWASTPGKLHIPDLAWLQSIPMIGDKVYH 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +   ++   S  +            +    A+  G + L   L ++F ++     Y  G
Sbjct: 127 SYHTLVNAGGSALVAKVQPYFGQTATWFVAQAAHIGRLLLHCTLMLLFSVL----LYARG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  +      L          +  + IR+  LG+ + A+ + ++ G    + G+P+ 
Sbjct: 183 EQVALGIRHFATRLGAERGDAAVVLGGQAIRAVALGVVVTALVQSVLGGIGLAVTGIPAA 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I  +   G  +      I+L   G+    T L +W  +   + D  LRP L+
Sbjct: 243 TLLTVLIFICCVAQLGPLLVLVPAIIWLYWSGDTTWGTVLLVWSCVVATL-DNVLRPVLI 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                LP +    G++GG+   G++GLFIGPV++A+   +    +    E    +  
Sbjct: 302 RMGADLPMILILSGVIGGLLAFGMIGLFIGPVVLAVSYRLLTAWMNEAPEPTADLEE 358


>gi|323484731|ref|ZP_08090090.1| hypothetical protein HMPREF9474_01841 [Clostridium symbiosum
           WAL-14163]
 gi|323691799|ref|ZP_08106056.1| hypothetical protein HMPREF9475_00918 [Clostridium symbiosum
           WAL-14673]
 gi|323401968|gb|EGA94307.1| hypothetical protein HMPREF9474_01841 [Clostridium symbiosum
           WAL-14163]
 gi|323504165|gb|EGB19970.1| hypothetical protein HMPREF9475_00918 [Clostridium symbiosum
           WAL-14673]
          Length = 373

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 105/343 (30%), Gaps = 5/343 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCL 73
           ++  I   +  +  F      A I+      + +       ++        +A + V+ +
Sbjct: 31  VLVFIGWIIRLVFPFLCGSAIAFILNVPMRFVETRLPEKRVRKHRRVISLTVALLFVILI 90

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +    +       +  L   +     +   +          +             +  
Sbjct: 91  LGIVFFLVVPQITDTLVSLKDLIPQFFMNVQVMLEKKFGEYPEIVEYINNINLQIDWKDT 150

Query: 134 KILSETFLKTNGIDFIPRFAS---RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 F+ T     +    +           + ++ IF I  L           +   +
Sbjct: 151 FEKIAGFVTTGAGTVLSSTLTAAMSIASGIATFGIAFIFAIYILLQKENLARQFKKLFYA 210

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    + +I R+  +       G    A+  G +      L  +P  + +GV+ A 
Sbjct: 211 YFPERAVNEFIRICRMAEQTFSKFLAGQCTEAVILGTMFFITLSLLRLPYSLLIGVLIAF 270

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            A+IP        A+ I+L +  N   A    +   +   I    + P +VG  + LP +
Sbjct: 271 TALIPIFGAFIGCAIGIFLTLVVNPVQAVWFTIVFFVLQQIEGNLIYPHVVGNSVGLPSI 330

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                +  G   MG++G+ I   L +++  + +E +    + +
Sbjct: 331 WVLAAVSIGGSMMGVVGMLIFIPLCSVVYALVREDVNRRLKRR 373


>gi|78223969|ref|YP_385716.1| hypothetical protein Gmet_2773 [Geobacter metallireducens GS-15]
 gi|78195224|gb|ABB32991.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 350

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 100/331 (30%), Gaps = 12/331 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR              + ++L++ +  +   + +L++L+I +   P       K      
Sbjct: 1   MRPRDAAHIAWFLAATLGVVLLAGHVARHSLSAILTSLVIAYLLNPFMKCLERK-GLGRI 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  + +  +    L  L  Y   +++     V    Q+   V           + S
Sbjct: 60  PAIAILYLCIAVIMFFSLFALIPYLNHQLEAFPRAVPRYVQNLERVMEVWKARLSPYYGS 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  T  ++  Q         +   G   +                +++   I +FF    
Sbjct: 120 DEGTWLIASAQDSLKKLALDVSGKGYQELKAALFG--------LFNLVLAPILVFFMLSS 171

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  +     H     ++++   +   +    +      +  G++   A +L G+  
Sbjct: 172 KQFFKDLILRFVPHRERHSFREVGGRIKDSLERFVMAQFFDCLLVGILSALALYLLGIEF 231

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC---LFLWGAIELFIVDKTLR 297
            +  G +    +++P    +        +                 +  I + I    ++
Sbjct: 232 PLLNGFVAGFASVVPYVGVMVAVIPPALMGYAETGDLMIIPKVCAAYFVINVIIEGNLIK 291

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           P L+ G ++L  L   F L+     MG  G+
Sbjct: 292 PLLMRGTLRLNPLAVVFALMALGELMGFWGV 322


>gi|284008475|emb|CBA74962.1| putative permease [Arsenophonus nasoniae]
          Length = 354

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 113/349 (32%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +  ++ + I    ++F     AP+L A+++ +           K   S   
Sbjct: 10  RRRFSDPQVVALFISLIIGFCIIFFFHDILAPLLVAIVLAYLLEWPTQKL-GKLGLSRLA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I     M +  +  L +      +   L+  +           + L +    +    
Sbjct: 69  AASIVLTIFMGISAMVFLIIVPIVWQQGMNLLFDLPSMVNSFNEYAKALPERYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +++    +  +   + ++ + + +FF  +D 
Sbjct: 125 ----VDAGIIDMIADNLRNRLSTLGESVVKYSVASLIGIITIAIYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + L  +          ++ + + + I +   G  I  +  G+    A+   G+   
Sbjct: 181 TRMIRGLQRILP-RDRLLVGQVWQEMNQQITNYIRGKVIEMMIVGICTYIAFAFLGLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  I  +IP    +  T   +   L   G   +   L +   I   +    L P 
Sbjct: 240 LFLSVLVGISVLIPYIGAVVVTIPVVLVALFQWGIGPDFWTLLIAYLIVQGLDGNLLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVNLHPLVIILSVVVFGGLWGFWGVFFAIPLATLIKAVMHVWPED 348


>gi|187922753|ref|YP_001894395.1| hypothetical protein Bphyt_0747 [Burkholderia phytofirmans PsJN]
 gi|187713947|gb|ACD15171.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 358

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 119/344 (34%), Gaps = 8/344 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +   I   + + L+ L     P L   I+ +   P  +  + ++       A++  
Sbjct: 13  RRAFIWLAIALGVGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRV-PRGLAALLMM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  + +L +      E  +L  +V +   H     +     P         +   
Sbjct: 72  LLFTLVMTLLVLLVLAVIQKEAPQLKQQVPVFFAHVNAWLQ-----PKLAMLGLADSLDF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  + L +            +   +    G + +    +++ + + LF+   D   +  +
Sbjct: 127 ASIRDLVMGQLEGSAQTVAVYAWTYIRTSGNVMVTVVGNVVLVPLVLFYLLYDWNRMLAR 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +    +     +++R + +++     G  ++     +    A  +A     + +G+ 
Sbjct: 187 AQVVVPRRWLDKTLQLARDMDQMLSQYLRGQLLVMGVLAVFYAVALTIARFEIALPVGIF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +  A+++       G+ +    + +   +   +    L P LVG  I
Sbjct: 247 TGLAVFIPYIGFATGLALALLAALLQFGDWYGFGAVAVIYGVGQILESFYLTPRLVGERI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L  L   F L+   +  G  G+ +   + A+++V  +E   + 
Sbjct: 307 GLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVAVRELRQSY 350


>gi|30021450|ref|NP_833081.1| hypothetical protein BC3342 [Bacillus cereus ATCC 14579]
 gi|206969183|ref|ZP_03230138.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218234805|ref|YP_002368060.1| hypothetical protein BCB4264_A3355 [Bacillus cereus B4264]
 gi|296503859|ref|YP_003665559.1| hypothetical protein BMB171_C3029 [Bacillus thuringiensis BMB171]
 gi|29897004|gb|AAP10282.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206736224|gb|EDZ53382.1| putative membrane protein [Bacillus cereus AH1134]
 gi|218162762|gb|ACK62754.1| putative membrane protein [Bacillus cereus B4264]
 gi|296324911|gb|ADH07839.1| hypothetical protein BMB171_C3029 [Bacillus thuringiensis BMB171]
          Length = 373

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 INVANMVKEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|186686551|ref|YP_001869747.1| hypothetical protein Npun_F6544 [Nostoc punctiforme PCC 73102]
 gi|186469003|gb|ACC84804.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 354

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 106/343 (30%), Gaps = 16/343 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +G    +++   L  LY L      ++ A +I      +      K  +S     ++  
Sbjct: 15  TRGAPLAVMLAAALYILYQLLPVLELLVIAALIALILRTLLRFLQ-KLVKSQDVAVLLLI 73

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++   +V    +      E ++L+  +             L      +          
Sbjct: 74  GLIIGFVVVLATVVVPSVTFESQKLIKTLPTYLNRLTGDVEQLRQKFTFIPDISQAL--- 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           N  D +      F    L+  + ++  +I   +   D  S+ + 
Sbjct: 131 ------------IQLRNLTDHLLGGVPVFLGEALNLTIELVATLILALYMAYDPNSLVKG 178

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L        +K+I +     +R    G  I  I  G        + G+PS +  G+I
Sbjct: 179 ILRLVPRRHHQRFKRILKACETRLRGWIFGTGIAMIFLGAGATFGLLILGIPSALPFGII 238

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +IP    +    +   + +  +      + +   +   I    ++P ++G  + +
Sbjct: 239 AGLFEIIPYFGSVIGAFLPALVALSISPLKLVFVLILFFVMNQIDAHVVQPLVMGQQVNI 298

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +      +   +  G +G+ +     A+I  +  E     K
Sbjct: 299 HPVMVIVTFLVMGKLFGFIGVLLAVPAAAVIITLIDEFTPEEK 341


>gi|145589942|ref|YP_001156539.1| hypothetical protein Pnuc_1762 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048348|gb|ABP34975.1| protein of unknown function UPF0118 [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 329

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 107/329 (32%), Gaps = 6/329 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +   F P L+A I+ +   P +     ++  S    A ++ +  + +    L        
Sbjct: 1   MAEIFTPFLAAFILAYILRPAFLWLERRRVPSP-LAAGLSIIFGLGIVGAILSLFIGLLK 59

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  +  ++     +      WL      +  +  W    +          +      +
Sbjct: 60  TEVPMIKEQLPTWIANTQA---WLGPKLADLHINMDWGHLKTLASQKISEHISENADELM 116

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                     G   +   ++ + ++  +F+   D     Q + +L           ++  
Sbjct: 117 STTLDTVLMSGSSVITGFVNAVLILFVMFYLLIDWAQFFQYIKNLVPPRAQETIHHLAMH 176

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              ++     GM I+             L G+   VALG+ TA+M +IP         ++
Sbjct: 177 TDGLLSQYLNGMVIVISIMSAFYSIGLSLIGLKGAVALGIFTALMIVIPYIGITIGFTLA 236

Query: 267 IY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           I   LL  G       +     +  F+    L P LVG  I L  +   F L+   +  G
Sbjct: 237 IISALLQFGPQKELVAVMGLYGLGQFLEGFILTPRLVGERIGLHPVVVLFALLLFGKLFG 296

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G+ +   + A+  V+ +       ++ 
Sbjct: 297 FFGVLLALPISAVSLVMVQYLWSVYTQSN 325


>gi|171056705|ref|YP_001789054.1| hypothetical protein Lcho_0013 [Leptothrix cholodnii SP-6]
 gi|170774150|gb|ACB32289.1| protein of unknown function UPF0118 [Leptothrix cholodnii SP-6]
          Length = 363

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 151/322 (46%), Gaps = 4/322 (1%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              ++ F   +  A I+ + SWP++   ++       + A+  +  +     V LL+L  
Sbjct: 35  FVVMRPFLVSIAWAAILVYVSWPLHVRTLALLRGHRAWAALAMSGVLTLTLGVTLLWLGL 94

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               E+     +V    Q G  +P  ++ IP      +         ++   L  T L  
Sbjct: 95  LLRGELILAFREVTALLQTGPHLPEPIARIPLLGPWLQERLAEFGGDRAALKLQLTELAE 154

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                  R     G+  L +       ++  FF +RDG  + +QL  + + L        
Sbjct: 155 QWAGRTLRILGDVGVNALLF----GVALVTSFFLFRDGDRLLEQLRRILQGLLGERVDGY 210

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V    R+   G+ + A  +GL+ G  YW+AGV + V  G  TA++A+IP GAP+ + 
Sbjct: 211 FNAVGDTTRAVVYGLLLAATAQGLMAGLGYWVAGVKAPVFWGAATAVIALIPFGAPLVWG 270

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           ++ ++LL++G +     L LWG + +  +D  +RP ++ G   +PFL   FG++GG+   
Sbjct: 271 SIGLWLLLQGQLGAGIGLLLWGGLAVSWIDNLVRPMVISGVADIPFLLVLFGVMGGLAAF 330

Query: 324 GLLGLFIGPVLMALIAVIWKES 345
           GL+GLF+GPV++A++  +W+E 
Sbjct: 331 GLIGLFVGPVVLAVLLALWREW 352


>gi|323484140|ref|ZP_08089510.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323693215|ref|ZP_08107433.1| hypothetical protein HMPREF9475_02296 [Clostridium symbiosum
           WAL-14673]
 gi|323402582|gb|EGA94910.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323502698|gb|EGB18542.1| hypothetical protein HMPREF9475_02296 [Clostridium symbiosum
           WAL-14673]
          Length = 374

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/337 (16%), Positives = 116/337 (34%), Gaps = 2/337 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++    + I+      L GFF P +   II   + P+        +      +++  V
Sbjct: 13  NILIPLAGLCIVCFLGPKLLGFFMPFVIGWIIALIANPLVKFLERHLKLVRRHGSMVIIV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKH 126
            V+ L I  L     +   EM   V  + L   + +       +    +  +  +   K 
Sbjct: 73  GVLILVIGLLYLAVVWTYTEMAGFVKDLPLLYDNALSEITEAIENSRKLVTYLPDSLQKP 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L         +   L +         A        +  ++ + MI+A + F  +   I +
Sbjct: 133 LLEISDNLGGTIGALFSKAAAPTVEIAGNVAKGIPNVMVNTVIMILASYLFLVERDKILR 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L ++       Y   + +    +I   FL    I      +L +   + GV   + L V
Sbjct: 193 GLKAVLPPFVFRYVDYLKKDARGLIGGYFLAQFRIMFVVAAILAAGLMILGVKYSLVLAV 252

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + A++  +P     +       + +    +      +   I   +V + ++P +VG  + 
Sbjct: 253 LIAVLDFLPIFGTGTVLLPWAVVKLFSAEYPYAAGLILIYITTQVVRQIIQPKIVGDSMG 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           LP L T F L  G +  G+ G+ +   +  +    +K
Sbjct: 313 LPPLITLFLLYMGYKVKGIAGMILAVPIGLIFINFYK 349


>gi|120405597|ref|YP_955426.1| hypothetical protein Mvan_4645 [Mycobacterium vanbaalenii PYR-1]
 gi|119958415|gb|ABM15420.1| protein of unknown function UPF0118 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 396

 Score =  119 bits (299), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 129/350 (36%), Gaps = 5/350 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +  + +  +  + YFL+ +   +  + ++ +   P+ +  +++    S   A +
Sbjct: 7   LTQKRALAVLTVIALAFAAYFLRTYLLLIAISAVLAYLFTPLNNRLLTRMG--SGAAATV 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ +    +PL  + +   L++ ++V+ +    +           +            
Sbjct: 65  TLLAAIATVALPLSGVAFLAFLQISQMVTGISQWVERTDFTALGQRLLDSANQLLARIPF 124

Query: 126 HLSH-PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +         +   +     +F   FA       +    ++I  I        +G  +
Sbjct: 125 IDTTLTPESVRDALATIGQKAGEFALGFARDSVGGIVAMVTALILFIYVFLALLTNGTKV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 L   L           V  ++ +T  G  IIA+ +G+    + ++ G+     +
Sbjct: 185 LDLFRDLNP-LGQQVSDIYLAKVGAMVSATVKGQFIIAVCQGVAGAVSVYIGGIHDGFFM 243

Query: 245 GVI-TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VI   +++ IP G  I    + + + + GN      + ++  I +  +D  LRPFLV  
Sbjct: 244 FVIFLTVLSFIPLGGGIVTIPLGVGMAVFGNPVGGIFVIVFHIIVVTNIDNLLRPFLVPK 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              L        +  G++  G +G+ +GPVLM +I       ++  K+  
Sbjct: 304 SAHLHPALMLLAVFAGLQMFGFIGIVLGPVLMIVIVTTISVYLVVYKDAP 353


>gi|160889921|ref|ZP_02070924.1| hypothetical protein BACUNI_02354 [Bacteroides uniformis ATCC 8492]
 gi|156860309|gb|EDO53740.1| hypothetical protein BACUNI_02354 [Bacteroides uniformis ATCC 8492]
          Length = 371

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 108/336 (32%), Gaps = 11/336 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV-PLLFL 81
               L G   P   A +I +  +P+ + F  +    +  +++   +  + +        L
Sbjct: 27  LFKRLSGVLLPFFIAWLIAYLIYPLVTFFQYRLRLKNRVISIFCALFSILIVGGTAFYLL 86

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               M E   +   V+    +G         +   +  +          +   +L+    
Sbjct: 87  VPPMMDEFVRVKDLVIDYFSNGTHDGNVPKTLSEFLRENIDTQFVTQLFKEENMLNAIKE 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +   +      F  + L +++++    F   D  SIS+    L    +  +  
Sbjct: 147 TVPRLWSLLSESVNLLFSFFTFFLILLYIV----FILLDYESISEGWTHLVPQKYRPFVI 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   V   +   F G   +A+  G++    + +   P  + LG+    + ++P    I 
Sbjct: 203 NVMNDVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNLVPYLQIIG 262

Query: 262 FTAVSIYL----LIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           F    +         G  F            I   I D  + P ++G    L        
Sbjct: 263 FIPTIVLAILKAADTGGNFWIIIASALAVFIIVQAIQDGFIVPRVMGKITGLNPAIILLS 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 323 LSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINREK 358


>gi|89900931|ref|YP_523402.1| hypothetical protein Rfer_2147 [Rhodoferax ferrireducens T118]
 gi|89345668|gb|ABD69871.1| protein of unknown function UPF0118 [Rhodoferax ferrireducens T118]
          Length = 357

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 85/355 (23%), Positives = 163/355 (45%), Gaps = 4/355 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +   + ++  ++  ++L     ++ F A +  A I+ + +WP++   ++      T+ A
Sbjct: 7   PLWLRRTVLAGLLGGLLLAGFVVMQPFVAAIAWAAILSYVAWPLHLKMLAWLGGRRTWAA 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +  T+ +  +  + LL+       E    V +     + G+ +P  +  I       +  
Sbjct: 67  LAMTLVLTLVLGLSLLWAGLLLRSEGAAAVREAAALLESGVRLPEAILSIVWLGPWLQER 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              LS  ++      + L         R     G+  L       F ++  FF + DG  
Sbjct: 127 LSALSGDRAAWGAPLSDLADQWGGHAMRMVGDLGLNALRLF----FALLTSFFLFLDGDQ 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +QL  +   L         + V    R+   G+ + A+ +GL+ G  YW  GV +   
Sbjct: 183 MLEQLRGVLYGLLGNRVHAYFKAVGDTTRAVVYGLLLAALAQGLLAGLGYWAVGVRAPAF 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G  TA++A+IP GAP  + ++  +LL+KG I     L LWGA+ +  +D  +RP ++ G
Sbjct: 243 WGAATAVVALIPFGAPAIWGSIGAWLLLKGQISAGVGLLLWGALAVSWIDNLVRPLVISG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             K+PFL   FG++GG+   GL+GLF+GPV++A++  +W+E      + +E   +
Sbjct: 303 VAKIPFLLVLFGVLGGLVAFGLIGLFVGPVILAILLALWREWAADNVQVREPPPA 357


>gi|42782433|ref|NP_979680.1| hypothetical protein BCE_3380 [Bacillus cereus ATCC 10987]
 gi|42738358|gb|AAS42288.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 376

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRRPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|227874564|ref|ZP_03992727.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
 gi|227844773|gb|EEJ54919.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
          Length = 478

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 99/335 (29%), Gaps = 17/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +     F ++  L+ +   F P   AL +  T  P+    I + +  +   A++  V
Sbjct: 76  RYALALAGTFAVVAGLWIIAPVFTPAFLALCMALTLHPVSQWLIRR-KVPAALAALLNIV 134

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + +     +         EL                 L  +           +   
Sbjct: 135 LMFAVMLGVTGMIAGALTAVTTELPRYQRKFQILYQDSIHLLERL---------GDRFNI 185

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+   ++         +    A+  G          +  I  +          ++  
Sbjct: 186 DMSSVTSPAQRVDLGRVTSYAGSLANSLGSAGTTMFYFTMLAIFLVGDLVVMRRRAAELA 245

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  +        R   +  R  FL  T    G  ++     ++  VPS +  G++ 
Sbjct: 246 T------YAPGLAISLRKFARGARMYFLMATFFGAGVAVLDIIVMYIFEVPSPLTWGILA 299

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       + +L+   +  A  + +   +   +V   ++P   G  + L
Sbjct: 300 FVANYIPAVGFIISMIPPVLMVLVTQGVGPAIGVAVSFIVISTVVFNFVQPRFAGSAVGL 359

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +F  L+     +G LG  +   +   I  I+
Sbjct: 360 NPTISFLSLMVWSAVLGPLGAVVSVPMTLFIKAIF 394


>gi|218898431|ref|YP_002446842.1| membrane protein YubA [Bacillus cereus G9842]
 gi|218545728|gb|ACK98122.1| membrane protein YubA [Bacillus cereus G9842]
          Length = 373

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 93  IVIGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 149 INVANMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 209 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 269 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 329 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 364


>gi|330882685|gb|EGH16834.1| putative lipoprotein [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 321

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 62/323 (19%), Positives = 135/323 (41%), Gaps = 3/323 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALIWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  M L   PL++L +     +++    +      G+P P        G+       
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDP---PQWLAGIPLVGERL 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L      +  +        +  +  +            L +   I+  FFFYRDG  +
Sbjct: 119 VALWTTIDQQGAAFMATLKPHLGQVGNWVLARSAQIGSGILELTLSIVFAFFFYRDGPRL 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + L
Sbjct: 179 AAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVL 238

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+   
Sbjct: 239 GILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISRG 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLG 327
             LP +    G+ GG+   G +G
Sbjct: 299 GNLPLVIVLLGVFGGLLAFGFIG 321


>gi|256789937|ref|ZP_05528368.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 359

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 120/351 (34%), Gaps = 14/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++ + L  L  +     P+L  L++   +WP       +        A + TV
Sbjct: 19  ELLLILVMLAVTLWVLGRMWSVVWPLLVGLLLTTLTWPPARFL-RRHGWRPALAATVVTV 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + + +  +  +      +  EL   VV   Q                WA+        
Sbjct: 78  AFLLVVLGIVALIAVPMSSQTDELTDGVVEGIQRLRE------------WAAGPPLNIGD 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  + S      + +  I    +      ++  ++ +  +  +FFF +DG      L
Sbjct: 126 DEITGAMDSAVARIQDSVGSITTAVATGVGAVVNGLITAVLGVFLMFFFLKDGPRFLPWL 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++    + + S      ++ + + + +G   W+ GVP  + L V+T
Sbjct: 186 ARQLPGRLATDVPVVALRGWETLGSFVRSQALVGLLDAVFIGLGLWILGVPLVLPLAVLT 245

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + +A  +     +   +     +P L    + L
Sbjct: 246 FVSAFVPIVGALFAGFVAVLIALVSNGLTDALIVLAIIVVVQQLEGNVFQPILQSRGLGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                   +  G    G++G  +     ALIAV+W      + E  E  ++
Sbjct: 306 HAAVILLAVTLGGSLSGIVGSLLAVPFAALIAVVWTYVREQLSERPEATAT 356


>gi|238544544|dbj|BAH60896.1| hypothetical protein [Desulfotignum balticum]
          Length = 355

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 107/353 (30%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ ++  + + + L ++        PV+++LII +    +      +       
Sbjct: 9   RRYFSDPQVVILAVFLVVGLATVLLAGRHLVPVIASLIIAYLLEGLIQPLQ-RVGAPRML 67

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +    + +  L +L      +  +L+ +V         +   L +    +++  
Sbjct: 68  AVGIVFLVFFLVLLALLFWLLPVLTRQATQLLQEVPDMLSASQTLILSLPEKYPNIFSEV 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L+  +            +  D + R      +  +   + I+ M + +FFF +D 
Sbjct: 128 EIENVLNQIRRE--------AGHFTDRMLRQTLSSVVGVITLVVYIVLMPLLVFFFLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +             ++ + V   + +   G     +         +   G+   
Sbjct: 180 DQLMGWIRRHLPRE-RGLASRVWQGVDVQLGNFIRGKFWEILIVWGASYLTFIFMGLSFS 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L  +  I  ++P       T     +      +      + L   +   +    L P 
Sbjct: 239 LLLAFLVGISVLVPYIGAAVMTFPVALVAYFQFGWTGDLAWIILAYLVIQMLDGNVLVPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  +     ++      G+ G+F    L  L+  +         E 
Sbjct: 299 LFSEVVNLHPIAIIVAVLFFGGIWGVWGVFFAIPLAILLQGVLSAWPRRPDEE 351


>gi|325108379|ref|YP_004269447.1| hypothetical protein Plabr_1815 [Planctomyces brasiliensis DSM
           5305]
 gi|324968647|gb|ADY59425.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 405

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 101/313 (32%), Gaps = 10/313 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P+  A+++     P+  SF      +     +   V    +F               ++
Sbjct: 78  MPLTMAVLLYLVLRPVMKSFAKWHVPAVAGATICLVVMSAIVFGAIFF-----LTQPTRQ 132

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            V+               L +    +         +++      +    ++      +P 
Sbjct: 133 WVNDAPGYMYQLKLKLSGLEEQLENVEEVSDKISDVTNGNDADEIKPMPVEIKQPRLLPG 192

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH-LFPAYWKKISRIVPKV 210
                      +   ++     LFF    G  + + L +             +   +   
Sbjct: 193 L--NLLSSTGGFAAGLVITFGTLFFLLAYGDEMIENLIAGFRTGESRKRAHMLIFDLQHG 250

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIY 268
           + S  L +T+I    G+  G+A WL G+P+ + +G +  +   IP       +     + 
Sbjct: 251 MSSYLLTITVINALLGVATGTAMWLLGMPNPLLIGTMAFLFNYIPFLGAWVGTGIVFVVA 310

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           +L   +   A  + +       +  + + P ++G  + +  L  F  L       G+ G+
Sbjct: 311 VLQFDSFAYALLVPVTYFTLTSLEGQFITPCILGRSMSMNPLLVFLFLAVWGWIWGIGGV 370

Query: 329 FIGPVLMALIAVI 341
           F+   L+A++ ++
Sbjct: 371 FLAVPLLAVLKIV 383


>gi|227530354|ref|ZP_03960403.1| possible permease [Lactobacillus vaginalis ATCC 49540]
 gi|227349734|gb|EEJ40025.1| possible permease [Lactobacillus vaginalis ATCC 49540]
          Length = 374

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 112/337 (33%), Gaps = 10/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           FI      FL   F P+L +  + +   PI +  +     K   +    +++  V ++ +
Sbjct: 33  FIFKPFWTFLSVVFVPLLLSGFLYYMLNPILNLIVKIKIGKFRINRGIASLLIVVLLILI 92

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  L    + E+ +LV+ +         +          +  S L    L+     
Sbjct: 93  IVWGISALIPPVVKEISQLVNHLPQTVSGLQSLMN------DTIKHSPLKHVDLNAYYRQ 146

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  +         +  +  +  I + + LF+  +DG  +   +     
Sbjct: 147 FDHQLAAYAQKILKGLSERVGDIIGMVTNITVVTITVPVMLFYMLKDGSKLVPAIQKWLS 206

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +   + S   G  I  +  G+     Y +   P  + LG++  +  +
Sbjct: 207 PHHAKEVNQLLGKMNNTLSSYIAGQVIECLFVGVFTSIGYLIIHEPLALVLGIVAGLCNI 266

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++++ +         + +   I   +    + P ++G  +K+  L   
Sbjct: 267 IPYVGPYIGIAPALFVSLTMAPDKLIWVIVVVLIVQQVDGNIIYPNIIGKTLKIHPLTII 326

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+      G+ G+ +     A++  + +      +
Sbjct: 327 VLLLAAGHIAGIAGMILCIPFYAVLKTVVEYMFDIYR 363


>gi|229081848|ref|ZP_04214340.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-2]
 gi|228701436|gb|EEL53930.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           Rock4-2]
          Length = 365

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 119/348 (34%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISVLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++Q+   L  +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHRLAQKARKLLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K ++
Sbjct: 304 KVLSSNIGLDPLATLVALFVGFKLFGFLGLIIGPVTLVLLNTLHKANV 351


>gi|148927564|ref|ZP_01811042.1| protein of unknown function UPF0118 [candidate division TM7
           genomosp. GTL1]
 gi|147887092|gb|EDK72582.1| protein of unknown function UPF0118 [candidate division TM7
           genomosp. GTL1]
          Length = 344

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 36/339 (10%), Positives = 102/339 (30%), Gaps = 14/339 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFL 81
           S++  +     +  AL +        S    +           IA V V+ L     L +
Sbjct: 3   SVWSARDALLTIGIALFLALALNMPVSYIAKRLPGKSRAGATAIAFVLVVTLLGSFFLTV 62

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + +      ++    +        + +          +   L + Q       + L
Sbjct: 63  VPPVIEQTARFAERIPETIEDIKGQTVPIDNFVDSYGLRGQYDDALENTQKQAANFASSL 122

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +  +           +   L+ + ++    +  R                     +
Sbjct: 123 GGSFVSGVGAVLDAAVRTLIILVLTFLMLVEGPMWLQRLWGLYRNPTRL-------ERHR 175

Query: 202 KISRIVPKVIRSTFLGMTIIAIG------EGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
            +   + +V+     G  ++A          +++ SA++       + +  +  +  +IP
Sbjct: 176 ALVNRMYRVVSGYVTGQILVASIASTGSALTVLILSAFFPFPANLAMPVAAVVFVGGLIP 235

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                    ++I LL   +   A    ++  I   + +  + P +    ++L  L     
Sbjct: 236 MFGATIGGIIAIVLLALNDFTAAMLFTIYFVIYQQVENNFISPTVQSRTVELSALTVLTA 295

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  G+   G+LG  +   +   + V+  + +   +  +E
Sbjct: 296 ITIGLSLFGILGGIVSIPVAGCLRVLLNDYLEHNRRARE 334


>gi|326790477|ref|YP_004308298.1| hypothetical protein Clole_1374 [Clostridium lentocellum DSM 5427]
 gi|326541241|gb|ADZ83100.1| protein of unknown function UPF0118 [Clostridium lentocellum DSM
           5427]
          Length = 385

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 114/376 (30%), Gaps = 24/376 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFIS 53
           M         +   +I++  L+      G          P +    + +     Y+ F++
Sbjct: 1   MNRFKKPVFLVTYGLILYFFLLRFEVFSGVMLKLLNLTKPFIWGFALAYILNIPYTYFLT 60

Query: 54  KK----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
           K           +   +   + + +    +       L       +   ++      Q  
Sbjct: 61  KLFKNNKRDPRYKLKKSLSLIASYLIFFFIIGFIFSMLIPQLGESINIFMANSTEYYQTL 120

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                 +        +       + +     I+S   +    +  +    +      ++ 
Sbjct: 121 QNYLTDIVTKLKLEPS-------IWNEIQKAIMSLVEVLKGLLPSLIGVVTSTASGLVNL 173

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
             ++   +  L         +++ LD+   +      K +  +  +  R   +G    A+
Sbjct: 174 LGTLFISVYFLASKETLMSLVTRTLDAFATNKTKTKLKHVLEVTDQTFRGFIIGQLTDAL 233

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G++      L G P  + LG +  +  +IP   P       + +++      A    +
Sbjct: 234 IIGIITFVCSSLFGFPYPILLGFLAGVTNVIPVIGPFIGAVPCVLIILMVEPTKAIWYVI 293

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  I   I    + P +VG    L  L     ++ G    G++G  +   L A+   +++
Sbjct: 294 FITILQQIDGNFICPKIVGDSTGLDGLWILLAVIVGGGFFGVVGCLLAVPLCAVAFKLYE 353

Query: 344 ESIMAIKENKEKISSN 359
           E +      +   SS+
Sbjct: 354 EFLSHRLTTENASSSD 369


>gi|162147804|ref|YP_001602265.1| hypothetical protein GDI_2020 [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161786381|emb|CAP55963.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 345

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 99/343 (28%), Gaps = 9/343 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +++ ++++S++ +      V +A +I      + +    +          +  V +
Sbjct: 10  LQVAILLAVMVLSIWLIGDVLMVVFAATLIAVILHNLAAMVERRTRLPYWLALSLVVVVL 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +                +   L   +              +     +            P
Sbjct: 70  LAAIGGLGWSSGPAIAEQATRLRIALTTQAHSLRGQLNASTMGRTVLDYL---------P 120

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           QSL               I    +           ++  ++IA  +F          L  
Sbjct: 121 QSLGGNQAGGGDNGMGSRIAGSMTGVLSSAFGAAGTLAVILIAGLYFALSPALYVNGLLR 180

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L         + +  +  + + +   G  +  +  G++ G   W  GVP  +ALGV+  +
Sbjct: 181 LIPPGHRPAARTLLLVAGRTLWAWTAGQALDMLVVGILSGVGLWFIGVPLALALGVVAGM 240

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
              IP          +I L +         +    A   F     + P +    +++P  
Sbjct: 241 ANFIPYIGAFIGAVPAILLGLSQGTREGLLVMALYAAIQFFEGNVMAPLIQRHAVQMPPG 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            T          +GL GL +   L A +  +   +   + E  
Sbjct: 301 LTILSQTVFGTILGLPGLVLASPLTAALLAMMDRATPPLDEED 343


>gi|145225428|ref|YP_001136106.1| hypothetical protein Mflv_4850 [Mycobacterium gilvum PYR-GCK]
 gi|145217914|gb|ABP47318.1| protein of unknown function UPF0118 [Mycobacterium gilvum PYR-GCK]
          Length = 394

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 14/302 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              P+  AL++    WP      +K         ++  +  + +    +  +    + + 
Sbjct: 54  VVLPLALALVVCTVLWPPVRWLRNK-GVPPAAAVLVVLLLAVGVLAGVVAAVAPAIVEQS 112

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +EL  +                      W             +  + + T    +    I
Sbjct: 113 QELAEQATAGIVQVRD------------WLGGPPLNISEAQLNSGVAAITDRLNSSSAQI 160

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                          +++   I+  FFF +DG      L          +  ++   V  
Sbjct: 161 ASGVFTGVGAATSALVTLFAAIVVTFFFLKDGPGFIPWLRRTVGQPAAPHLAEVLDRVWT 220

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIY 268
            +        +++  + +++G    + GVP   AL +IT I   IP     ++     + 
Sbjct: 221 TLGGFIRTQALVSFVDAVLIGIGLVVLGVPLAYALAIITFIGGFIPIVGAFVAGGLAVLI 280

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+     +A  +         +    L+P+L    +KL  +     +  G  T G++G 
Sbjct: 281 ALVSNGPVDALIVLGIIVAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTLGASTFGVIGA 340

Query: 329 FI 330
           F+
Sbjct: 341 FL 342


>gi|300741320|ref|ZP_07071341.1| putative permease [Rothia dentocariosa M567]
 gi|300380505|gb|EFJ77067.1| putative permease [Rothia dentocariosa M567]
          Length = 396

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 104/338 (30%), Gaps = 8/338 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +   +   +      V  A+ I     PI     S      +   VI  +S   +  
Sbjct: 67  LALLAYYAFTNVGALVGWVTGAIFIALGLDPIVRKLES-FGVKRSAGVVIVVLSFAAIIS 125

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             ++++      +    V +     Q  I                ++   +     ++  
Sbjct: 126 GLVVWIVPIISAQASSFVYRAPAIYQDFID-------SDTFKRIDDVLHVNDWVNNNVPK 178

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             E+   ++ +          G          I ++    +F     +I      L    
Sbjct: 179 FLESLTSSSAVGGFMSNLITAGSTIAQILTGTIIVLFLSLYFLSSMRTIKAWGSRLAPAS 238

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++++  +   + +  +G  ++A+           + G      + V   I+A IP
Sbjct: 239 KRERVEELTERITGAVGNYVMGQGVVAVLNATFALITMIILGFSFPQLVAVFVLILAFIP 298

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               ++   +   +L+      +    +   I L I    + P ++   + +P       
Sbjct: 299 LVGGVAALVLVSLILLTQGWQMSVTFAIAYFIYLQIEAYIISPRIMSKAVSVPGGVAIIA 358

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +  G    G+LG  I   + A + ++ KE  +  ++++
Sbjct: 359 VAAGGALWGVLGALIAIPVAASLLILVKEVFIPRQDHR 396


>gi|283833356|ref|ZP_06353097.1| putative membrane protein [Citrobacter youngae ATCC 29220]
 gi|291070999|gb|EFE09108.1| putative membrane protein [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 131/358 (36%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WPI            +
Sbjct: 5   RQPRDIAQVLLTVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPILLRLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LFI+P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFIIPIALLVNSIVDGSGPLIHAVTAGDMTLPDLAWLNNIPLVGAKMY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 GAWHSLLDMGGSAIMAKVRPYIGATTTWFVGQAAHIGR----FMMHCGLMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    + GVP 
Sbjct: 181 GEQVALGIRHFACRLASKRGDAAILLAAQAIRAVALGVVVTALVQAVLGGIGLAVTGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLAVLMILSCLVQLGPLPVLVPAIIWLYWTGDSTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP +    G++GG+   G++GLFIGPV++A+   ++   +            
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSWRLFSAWVNEAPAPGSDPDE 357


>gi|229075334|ref|ZP_04208327.1| hypothetical protein bcere0024_30750 [Bacillus cereus Rock4-18]
 gi|228707885|gb|EEL60065.1| hypothetical protein bcere0024_30750 [Bacillus cereus Rock4-18]
          Length = 376

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKEQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVANIVKDYTVDFTKSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   P+     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPVIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIVLAIPGYAILKVLVTH 367


>gi|326803671|ref|YP_004321489.1| putative ATP synthase F0, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650153|gb|AEA00336.1| putative ATP synthase F0, A subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 414

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 5/336 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    + F++    P++ A +  + S P+ +    +   S     ++  V V+   I
Sbjct: 59  IAFVFTPIIEFIQTIILPIIFAGVFYYLSSPLINFLRKRGLNSYWIAGIVLLVLVLI--I 116

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L+      + E K L+                  +I  G W          +  +  +
Sbjct: 117 LWLISFIPNLIDEAKHLIGNWSNIWTQYQTEIE---NIIFGRWFERSQETLAEYLNNFNL 173

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
               F     ++           +     ++++   I LF+   DG        S     
Sbjct: 174 NQFNFNWRELMNTTLSSIGSVFGVITRVIIALVTAPIILFYLIADGEKFRDNFASFIPVK 233

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++   + + I +   G   +AI   ++    Y + G+     L V+   + +IP
Sbjct: 234 IRNKTMRLLADMNQQISAYVRGQIFVAIAVAVMFAIGYAIIGLNYGTILAVVAGALNVIP 293

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     S+ + +  +      + +  AIE  I  + + P ++G  + +  +     
Sbjct: 294 YVGSFFGILPSLIVGLVQDPLMVIKVLIVFAIEQTIESRIISPLILGSNLNIHPITIMLL 353

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L+ G    G++G+ I   + A++ VI+       +E
Sbjct: 354 LIAGGDLFGVVGIIIIIPVYAVLKVIFTYIFEWYRE 389


>gi|307289338|ref|ZP_07569293.1| hypothetical protein HMPREF9505_02708 [Enterococcus faecalis
           TX0109]
 gi|306499705|gb|EFM69067.1| hypothetical protein HMPREF9505_02708 [Enterococcus faecalis
           TX0109]
 gi|315163738|gb|EFU07755.1| conserved hypothetical protein [Enterococcus faecalis TX1302]
          Length = 366

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 11/342 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPAVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 142 FLNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+       +  V   V LG++  I  MIP  
Sbjct: 202 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYF 261

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 262 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 322 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|2506918|sp|P43969|PERM_HAEIN RecName: Full=Putative permease perM homolog
          Length = 349

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 101/348 (29%), Gaps = 11/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +                + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFXRWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L     +  ++P    +  T       L   G       + +  A+   +    L P+L
Sbjct: 242 LLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIIIAFAVSQLLDGNLLVPYL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  L     ++      G  G+F    L  L+  +       
Sbjct: 302 FSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 349


>gi|254478928|ref|ZP_05092290.1| sporulation integral membrane protein YtvI [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035150|gb|EEB75862.1| sporulation integral membrane protein YtvI [Carboxydibrachium
           pacificum DSM 12653]
          Length = 349

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 112/341 (32%), Gaps = 2/341 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 1   MRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L             +   L D     + S
Sbjct: 61  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRIRMYYIS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++ +      +     +  +   F     ++    +  ++A FF  +D
Sbjct: 121 LPPNITSLIESNMQSIL--NYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 179 KQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAIIGFDY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG++  I+  +P     +         I    +      L     + +V + + P +
Sbjct: 239 PFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVVVVRQMIEPKI 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           VG  I L  L T   +  GV+  G +GL IGPV + +   +
Sbjct: 299 VGQSIGLHPLVTLLSMFIGVKLFGAIGLVIGPVFVVVFKAL 339


>gi|307294633|ref|ZP_07574475.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
 gi|306879107|gb|EFN10325.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
          Length = 369

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 138/339 (40%), Gaps = 3/339 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+    ++ + +     ++ FFA +L  +I      P+  + +          A +  + 
Sbjct: 14  GVFLGFVLIVSIAFALVIEPFFAAILWGVIAAILFAPVNQALLDMMPRRRNSSAALTLLL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L IVP   L    + E     +KV     +   +         G  A+ L    +++
Sbjct: 74  IIALVIVPAFILAMALVQEATIFTAKVQSGEINFARIFAQFQASLPGWAAAFLERLGITN 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +++ +    + ++    +   A + G     + +++  M+   FF  RDG  ++  +D
Sbjct: 134 FAAVREMLSEGIASSF-RTVATQALQIGQSAFSFLMALGVMLYLTFFLLRDGPLLAAMVD 192

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        + R    V R+T  G  ++AI +G++ G  +W  G+P  +  GV+  
Sbjct: 193 RAAPMRTTYRQA-LMRQFVIVTRATIKGSIVVAIVQGVIGGMVFWALGLPGALLWGVLMG 251

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             ++IP     + +  V+IYL + G +     L   G   + +VD  LRP LVG   ++P
Sbjct: 252 AFSLIPAVGTGLVWVPVAIYLFVTGAVVEGLILAFCGMFVIGMVDNILRPVLVGRDTRIP 311

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                   +GG+   G  G+ IGPV+ AL    W     
Sbjct: 312 DYVVLITTLGGIDLFGFNGIVIGPVIAALFIATWNIVTR 350


>gi|187934668|ref|YP_001885371.1| permease [Clostridium botulinum B str. Eklund 17B]
 gi|187722821|gb|ACD24042.1| permease [Clostridium botulinum B str. Eklund 17B]
          Length = 343

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 111/318 (34%), Gaps = 13/318 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K     ++ + I+ +   PI   F +K +      +V+  + ++ +FI  ++ +     
Sbjct: 33  VKSIVNILMISFILAYIIAPIRDLFQNKFKIKKKVASVLIILIILGMFISCIILIIPELF 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  +             +          +  S                          
Sbjct: 93  KEISNIGVIFDNIANFLEDIYVKFRVDSFPILKSIYNELI-------------EKGNALF 139

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +      ++ ++  +S   + + +++F  DG  I  +L  +         KKI + 
Sbjct: 140 LNLSKSLFDNIVLIVENLVSCAVIPVVVYYFLCDGDKIYNKLLFILPTEKREVTKKILKD 199

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + KV+     G   +++  G +      +  V   + + ++ AI+ +IP   PI     +
Sbjct: 200 IDKVLGRYITGQVFLSLIIGFLTFILLMIFKVKFPIWISILNAILNIIPYFGPIFGGVPA 259

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +   A  + +   +   I    L P +      +  +     L+ G +  G +
Sbjct: 260 VLVALLDSPIKALWVTIGVFVIQQIEGNILSPKITADSTDMHPVIIIILLLIGDKFGGFV 319

Query: 327 GLFIGPVLMALIAVIWKE 344
           G+ +   +  +I V++ +
Sbjct: 320 GMLLAVPIGVIIKVLYDD 337


>gi|148273430|ref|YP_001222991.1| AI-E2 family membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831360|emb|CAN02316.1| conserved membrane protein, AI-E2 family [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 411

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 108/337 (32%), Gaps = 14/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ ++   +  L+    P+  A+++     PI +               I+ +
Sbjct: 53  RVLLILGVLGVVAWLVIQLEYVVIPLFLAIVLAALLVPISNWMQRH-HVPKWLAVAISEI 111

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+      +  +    + +   L ++ +                      ++ + + + 
Sbjct: 112 GVIVAVAALVYLVTTQIIGQYDSLRAQTLTRYADLRGFLTDGPLQLSEQQLNDAYAQAVD 171

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               +   A             ++ ++ +  F   DG  + + +
Sbjct: 172 ------------AVQRDAGALLSGALSVTSSLGHVLTGVLLVLFSTLFILIDGAGMWRWV 219

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   L         +     +++      ++A+ + + +     + GVP  + +GV+ 
Sbjct: 220 VRLFPRLARPAVDGAGKAGWSTLQNFVKVQVLVALIDAVGIAGGAAIIGVPLAIPIGVLV 279

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP    + + T      L+   +  A  +     +   +    L+P ++G  +K+
Sbjct: 280 FLGSFIPIVGAVVTGTLAVFVALVYNGLTQALIMVGIVLLVQQVEGHVLQPLIMGSVVKV 339

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L     +  G    G+ G F    L+A +  + K 
Sbjct: 340 HPLAVVLSVAAGGMVAGIAGTFFAVPLVATLNSMVKH 376


>gi|121535600|ref|ZP_01667407.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
 gi|121305840|gb|EAX46775.1| protein of unknown function UPF0118 [Thermosinus carboxydivorans
           Nor1]
          Length = 344

 Score =  119 bits (299), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 117/345 (33%), Gaps = 14/345 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI------SKKEESSTF 61
           P   +++ ++   L  L      + P++ A I+ F   P+ +          K+  S   
Sbjct: 3   PARWVKFGVLVAGLYLLSKATAIYLPIILATILAFVLNPVVNWLCSLSLGPKKQACSRPV 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++       L  +   ++      E  +L   +         +   +          +
Sbjct: 63  AILLGFFLAALLLSLMATYILLPFAQESDKLADSLPALLIKIRTLTSTIEYRANMAEVPD 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +    +        L    I+    FAS+   +          + +  ++F +D 
Sbjct: 123 NVRVLIDEGLARAAAFSVELAQRAINAFIGFASQVVELI--------VVPVLTYYFLKDW 174

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    L           +   +  V+     G  +++I  G ++ S  +L G+   
Sbjct: 175 RDLKRMAVDLFPAGMRGKATVVIEEMGTVVSKYVRGQVLLSIIMGFIVFSGMYLLGLDYP 234

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LG++  +   IP   PI     ++ L        A  + ++  +   + +  + P ++
Sbjct: 235 LVLGLLAGLTEFIPIIGPIIGAIPAVLLAYATEPALALKVIIFYFLAQQLENHIILPKIM 294

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G  I L  +     L+ G +  G++G+ +   + A++ V+ K   
Sbjct: 295 GHTIDLHPVFVMVSLLIGGQLYGIMGMMLAVPVAAILRVLLKHLW 339


>gi|224025943|ref|ZP_03644309.1| hypothetical protein BACCOPRO_02689 [Bacteroides coprophilus DSM
           18228]
 gi|224019179|gb|EEF77177.1| hypothetical protein BACCOPRO_02689 [Bacteroides coprophilus DSM
           18228]
          Length = 376

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 117/347 (33%), Gaps = 11/347 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +G++   ++  IL  L  L G   P   A +I + ++P+   + ++          +   
Sbjct: 14  RGVLSGAVIIAILYLLNRLSGVLLPFFIAWLIAYLTYPMVIFYQNRLRLRSRVLSILAVM 73

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++++ L  +   F     + E     +K+    +  +   R  + IP  +          
Sbjct: 74  LTLVVLGGIAFSFFVPPMIEEC----AKLKELIEIYLIEDRNHAAIPETVSEFIRKNIDF 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  Q+             +              +    ++  +I+ LFF   D   I+  
Sbjct: 130 NWLQNNITTDNIVSAIQKLLPKVWTLLSTSYNIILAIFTLFIIILYLFFILLDYEQIANG 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L    +     +++  +   +   F G  ++A   G++    + +   P  + LG+ 
Sbjct: 190 WITLLPKKYQGMALRLTTDIKTSMNRYFRGQALVAFCVGILFSIGFLIIDFPLAIGLGLF 249

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ M+P    I F    +  L       +   +      +  A+   I D  L P ++
Sbjct: 250 IGLLNMVPYLQIIGFIPTILLALLKAADTGESFWWTLGLALVVFAVVQAIQDMILVPKIM 309

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           G    L        L      MG+LG+ I      L+   ++  I  
Sbjct: 310 GKITGLNPAIVLLSLSIWGSLMGMLGMIIALPGTTLLLSYYQRYIRK 356


>gi|114566423|ref|YP_753577.1| hypothetical protein Swol_0888 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337358|gb|ABI68206.1| protein of unknown function UPF0118 [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 370

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 116/315 (36%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            F P + A+++     P+ + F  K   +  +  VI+ + V+  F   L  L    + +M
Sbjct: 46  LFLPFIFAILLAVIIEPVVNFFEKKTHLNRNWSVVISLLLVVGGFFTLLSLLVSRIINDM 105

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L  +V+  +                ++     +    +     + +   L ++ ++  
Sbjct: 106 SRLYPQVLHYSDQITASFMAAISNLNLLYLGLNLSPQAQNALQQNMENGIKLVSSLMEKS 165

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                R   +     + ++   +A FF  +D   I   +         +  +++   + +
Sbjct: 166 INGLIRSLAMLPGILVFLMIATVATFFIIKDRALIRSFVMQWIPGNVRSKTREVFAELFR 225

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           V+        I+     +V   A  + G    + +G+I  ++ ++P   P +F    I  
Sbjct: 226 VLVGFVKAYGILISVTTIVTMVALRVLGFDYVITIGIIVGLLDILPVLGPGAFFVPWIIW 285

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
                  +     L   + + +V + L P +VG  I L  L T   L  G++  G  G+ 
Sbjct: 286 HFVAGDLHLGISLLIVYLLISVVRQFLEPKIVGDNIGLHPLATLISLYAGLQLGGFTGMI 345

Query: 330 IGPVLMALIAVIWKE 344
           +GPVL+ +    ++ 
Sbjct: 346 MGPVLLVIFIASYRA 360


>gi|20807695|ref|NP_622866.1| permease [Thermoanaerobacter tengcongensis MB4]
 gi|20516244|gb|AAM24470.1| predicted permease [Thermoanaerobacter tengcongensis MB4]
          Length = 339

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 120/348 (34%), Gaps = 14/348 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSL----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M N   I+ ++I+  I          +K   +P   ++++ +   P    F SK   + T
Sbjct: 1   MKNKVYIIWFLIVLGIFYIFIKNWVSIKSILSPFFVSILMAYLLNPFVRYFTSK-GFTLT 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F  +     V    ++   ++F   + E+   V       +    V              
Sbjct: 60  FSILTVFFIVAAAILIFSYYVFPILIGELASFVKVAPKYLRELNSVLNHFKFNYLSNLPP 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            + +    +   L     + + T     +           L   + I+ + I  F+F +D
Sbjct: 120 NIESAVEKNLNVLTAGVASSIDTFFKSAVG---------MLKGFVDIVIIPILTFYFLKD 170

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                 Q++ L    +      +   V +++         ++I  G   G    L  V  
Sbjct: 171 KDIFLTQVECLIPLKYREKIFSLLFKVDRILSKYLRAQAYLSIFVGAFTGLGLALVKVRY 230

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LGVI  I+ +IP   PI     ++ + +  +IF     F    +   + +  + P +
Sbjct: 231 AFLLGVIAGILNIIPYIGPILSILPAVAIGLMDSIFKGLWAFAICLLIQQVENVFVTPKV 290

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +G  + L  +   F L+ G    G+ GL     + A++  ++ E  + 
Sbjct: 291 MGDSVGLHPVTVIFVLILGEELFGVWGLLFSVPVAAILKEVFTEIFLD 338


>gi|52142187|ref|YP_084642.1| permease [Bacillus cereus E33L]
 gi|51975656|gb|AAU17206.1| conserved hypothetical protein; possible permease [Bacillus cereus
           E33L]
          Length = 376

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVLTVIPIIKNQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|294101585|ref|YP_003553443.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
 gi|293616565|gb|ADE56719.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
          Length = 402

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 132/337 (39%), Gaps = 4/337 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVS 69
              + + +  ++         P+  + I+ F  +P Y+    K  +       A + T  
Sbjct: 41  FTVVFLALGALAYLVSFNLLRPLAWSAILSFFVYPFYTLIYEKILKKKYANIAASLTTAV 100

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L +VP +F+      E   +   +                            +    
Sbjct: 101 IIVLIVVPSIFVGVTLAREGIRIYGHLATVLSRVNVEQGKTIMSVFFPDVLAERIRPFLA 160

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +     + +     +   +  F    +     +I +++A FF  RDG  I   ++
Sbjct: 161 EYPFLVNVIEQVGSWIASTLATLSRSFLGDTIRILYQLIVIVVASFFMIRDGHIILDYVN 220

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +         +       +++++   G+T+ A  +G +    +W  G+PS    G + A
Sbjct: 221 DIVPLPLKEK-EAFFNRAKQILQAVIYGITLTAGVQGFLGALGWWYVGLPSPAVFGAVMA 279

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++AMIP    P+ +   +IYL   G I  A  L +WG I + +VD  +RP  + G  K  
Sbjct: 280 LLAMIPFIGTPLVWGPGAIYLFYSGQIKEALILAIWGLIVVSMVDNFIRPIFISGGGKAH 339

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L  F G+VGG+ + G LGLF+GP++++L   +    
Sbjct: 340 VLIIFIGVVGGLASWGFLGLFLGPLVISLFIFLLDSY 376


>gi|323528017|ref|YP_004230169.1| hypothetical protein BC1001_3697 [Burkholderia sp. CCGE1001]
 gi|323385019|gb|ADX57109.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 652

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 98/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +   +++ +LYF +    P+  ++++ F   P+  +   +          IA + 
Sbjct: 24  GLASVITGVVVVSALYFGRAVLIPITLSVLLSFLLAPLVQTL-RRLHMGQLPSIFIAVLF 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +     +    +    +L        Q    V          + +    T     
Sbjct: 83  ALAALLAIGALIGAQLVQLASDLPQYQFAIEQKIETVQEKTIGRADSLMSRAAATLQRVA 142

Query: 130 PQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMIIALFF 176
           P        T         +              + A R     +    +   +++   F
Sbjct: 143 PSKPPPPRPTGRAARNAPAVPTPVEVHEPSPTPLQLARRALSPAIAPIETTFIVLVVTIF 202

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G V+     + 
Sbjct: 203 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSRYFVAQLGVNLSAGGVIAIGLAII 262

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++  L    +     A    +   +   +  +
Sbjct: 263 GVPGALLFGVIAALLRFVPYIGIWIAAILAFILAAAIQPQWTMAVYTLILFIVVDVVAGQ 322

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 323 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCVVTLGR 371


>gi|228901850|ref|ZP_04066020.1| hypothetical protein bthur0014_30340 [Bacillus thuringiensis IBL
           4222]
 gi|228909160|ref|ZP_04072988.1| hypothetical protein bthur0013_33150 [Bacillus thuringiensis IBL
           200]
 gi|228850481|gb|EEM95307.1| hypothetical protein bthur0013_33150 [Bacillus thuringiensis IBL
           200]
 gi|228857791|gb|EEN02281.1| hypothetical protein bthur0014_30340 [Bacillus thuringiensis IBL
           4222]
          Length = 376

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVIGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|150015906|ref|YP_001308160.1| hypothetical protein Cbei_1020 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902371|gb|ABR33204.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 381

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 100/328 (30%), Gaps = 2/328 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +    +P + A+I  +   P+ S F +  +       +I    ++ L I+ L F     +
Sbjct: 43  VLSIMSPFIYAIICAYILNPVVSFFENNFKTRRAISILITYFIIIALIIIILFFTIPSIV 102

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  +  ++    +        L  +      + +    L +           +    +
Sbjct: 103 DSIVNITKEMPAYVEIIQKWINTL--LQNERIKTLIVQAGLLNKLQEMSSQIGSVTIGLL 160

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                +   F    +      +  I  L    +           +             R 
Sbjct: 161 QNFVMYLLSFTSNLVSVIFGFLISIYVLLDKEKLLKRARTITYMIFNEEKGNKLVTFIRT 220

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             K+I        I +    L+      + G P    + +I  I  MIP   P+    V 
Sbjct: 221 YNKMIGVYIGIKAIDSAIISLISLIGLLIVGEPYAPLIALIEGITNMIPYFGPLIGEVVG 280

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + I  +   A  +F+            L P L+G  + +  L    G+  G    G  
Sbjct: 281 AGVAIFVSPMKAFMVFILLLCIHLFDAWYLDPKLIGKKVGVSPLGIILGVAIGGGFWGPF 340

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+ +G   MA I + +++++   ++   
Sbjct: 341 GMLLGSPTMATIKIYYEKTVEEFRKKNP 368


>gi|113971076|ref|YP_734869.1| hypothetical protein Shewmr4_2741 [Shewanella sp. MR-4]
 gi|113885760|gb|ABI39812.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 369

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 123/344 (35%), Gaps = 4/344 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   M++ +          F   +L A+I+    +P +     +  +     A +  V  
Sbjct: 22  IKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLNDKQGRAATLLIVVG 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++P + +       M  LV +V             +++IP          +  S  
Sbjct: 82  LMVLVLPTITMVSSMTDNMGSLVERVNQNTLEVPAPKESIANIPFVGAKIYDVWQKASTD 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + S           +    +      L    S I   I + +      S ++    
Sbjct: 142 LPSLVKSLQPHLGEVTKQVIHALASISGSLLMSMFSFIIAGIMMAYGRAGAQSSARIATR 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P    K+  I    IR+  LG+  +A  + L++G    LAG+P      ++  +
Sbjct: 202 IAG---PERGAKLINICSTTIRAVALGVIGVAFIQALLVGIVMTLAGIPLVGIFFILVLV 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +    A +       Y+ + G+     + ++    I    VD  L+P L+G  +  P 
Sbjct: 259 LGIAQVPALLVTLPAIAYIWMTGDNGTVGSIIYTVLLILAGAVDNVLKPILLGRGVDAPM 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G +GG+ T G+LG+FIG  L+++   I+   +    E  
Sbjct: 319 PVVLIGALGGMATSGILGMFIGATLLSIGYRIFMAWVDEGLEEP 362


>gi|260174265|ref|ZP_05760677.1| putative permease [Bacteroides sp. D2]
 gi|293370047|ref|ZP_06616614.1| membrane family protein [Bacteroides ovatus SD CMC 3f]
 gi|299147768|ref|ZP_07040831.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|315922536|ref|ZP_07918776.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292634965|gb|EFF53487.1| membrane family protein [Bacteroides ovatus SD CMC 3f]
 gi|298513951|gb|EFI37837.1| putative membrane protein [Bacteroides sp. 3_1_23]
 gi|313696411|gb|EFS33246.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 377

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 112/344 (32%), Gaps = 12/344 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
           +++  IL+ +  L G   P   A +I +  +P+   F  K            +   +  +
Sbjct: 19  VLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + E+  +   +V    +G       +         +L   +    +  
Sbjct: 79  GVTLFYLLVPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D  +I++    L  
Sbjct: 139 ILAAIKDTVPRVWTLLAESLNILFSILASFIILLYVI-----FILLDYEAIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|193214208|ref|YP_001995407.1| hypothetical protein Ctha_0489 [Chloroherpeton thalassium ATCC
           35110]
 gi|193087685|gb|ACF12960.1| protein of unknown function UPF0118 [Chloroherpeton thalassium ATCC
           35110]
          Length = 404

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 123/340 (36%), Gaps = 4/340 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++   +  +  L G  +P + +  + +   P+ +    K+    +  A   T+
Sbjct: 53  RRLLWSSVILFFIWFVTALSGLLSPFIISFTLAYLFDPMVNWLCKKRV-PRSVAAFFITM 111

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    + ++ +      ++  L+  + +  +  + V   LS        +        
Sbjct: 112 FGIGGLALLIILVVPEVSRQIMALLGLIKILPERTLDVINALSKWEFFDRLNLDVEMMEK 171

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L       +     DF    A     + +   ++IIF+ I  F+F  D  +I   L
Sbjct: 172 QLSGLVTSRVGDIGKLTADFATSLALSIPKV-ISTIMNIIFIPILSFYFLNDFETIRDTL 230

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +  + +     +   +   + +    G  II   E ++    + L G+   + L +I 
Sbjct: 231 YKILPNTYTQTVHRYVDVAGTIFKQYLRGYLIIMTLEIILYTIIFSLIGIKYPLVLAIIA 290

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIK 306
             M  +P        +++  ++  GN      LF  L       + +  L P +VG  ++
Sbjct: 291 GAMLFVPYIGIFISVSLTALVIALGNGEGQIYLFTGLTYLTIQSVENFFLIPKIVGSRVQ 350

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L  +  F  +V     +G +G+ I   + A +  I++  +
Sbjct: 351 LNPILLFLAIVLFGYFIGFVGILIAVPVSAFLVAIFRHKV 390


>gi|228953629|ref|ZP_04115670.1| hypothetical protein bthur0006_30060 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228959546|ref|ZP_04121229.1| hypothetical protein bthur0005_30270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229110765|ref|ZP_04240328.1| hypothetical protein bcere0018_30150 [Bacillus cereus Rock1-15]
 gi|229128624|ref|ZP_04257602.1| hypothetical protein bcere0015_30700 [Bacillus cereus BDRD-Cer4]
 gi|229145928|ref|ZP_04274307.1| hypothetical protein bcere0012_30770 [Bacillus cereus BDRD-ST24]
 gi|228637536|gb|EEK93987.1| hypothetical protein bcere0012_30770 [Bacillus cereus BDRD-ST24]
 gi|228654817|gb|EEL10677.1| hypothetical protein bcere0015_30700 [Bacillus cereus BDRD-Cer4]
 gi|228672644|gb|EEL27925.1| hypothetical protein bcere0018_30150 [Bacillus cereus Rock1-15]
 gi|228800115|gb|EEM47049.1| hypothetical protein bthur0005_30270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228806054|gb|EEM52632.1| hypothetical protein bthur0006_30060 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 376

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|270294583|ref|ZP_06200785.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276050|gb|EFA21910.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 371

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 108/336 (32%), Gaps = 11/336 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV-PLLFL 81
               L G   P   A +I +  +P+ + F  +    +  +++   +  + +        L
Sbjct: 27  LFKRLSGVLLPFFIAWLIAYLIYPLVTFFQYRLRLKNRVISIFCALFSILIVGGTAFYLL 86

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               M E   +   V+    +G         +   +  +          +   +L+    
Sbjct: 87  VPPMMDEFVRVKDLVIDYFSNGTHDGNVPKTLSEFLRENIDTQFVTQLFKEENMLNAIKE 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +   +      F  + L +++++    F   D  SI++    L    +  +  
Sbjct: 147 TVPRLWSLLSESVNLLFSFFTFFLILLYIV----FILLDYESIAEGWTHLVPQKYRPFVV 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   V   +   F G   +A+  G++    + +   P  + LG+    + ++P    I 
Sbjct: 203 SVMNDVKDGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNLVPYLQIIG 262

Query: 262 FTAVSIYL----LIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           F    +         G  F            I   I D  + P ++G    L        
Sbjct: 263 FIPTIVLAILKAADTGGNFWIIIASALAVFIIVQAIQDGFIVPRVMGKITGLNPAIILLS 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 323 LSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINREK 358


>gi|320114881|ref|YP_004185040.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319927972|gb|ADV78657.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 354

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 114/347 (32%), Gaps = 2/347 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L             +   L D     + S
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRIRMYYIS 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++ +      +     +  +   F     ++    +  ++A FF  +D
Sbjct: 126 LPPNITSLIESNMQSIL--NYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 184 KQLILDFIKRQIPSHWAQHAKSIQVNLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFDY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG++  I+  +P     +         I    +      L     + +V + + P +
Sbjct: 244 PFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVVVVRQIIEPKI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           VG  I L  L T   +  G +  G LGL IGPV + +   + +  I+
Sbjct: 304 VGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKALQRAEII 350


>gi|237713414|ref|ZP_04543895.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406786|ref|ZP_06083335.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646015|ref|ZP_06723680.1| membrane family protein [Bacteroides ovatus SD CC 2a]
 gi|294806044|ref|ZP_06764904.1| membrane family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446653|gb|EEO52444.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355489|gb|EEZ04580.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638586|gb|EFF56939.1| membrane family protein [Bacteroides ovatus SD CC 2a]
 gi|294446763|gb|EFG15370.1| membrane family protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295084671|emb|CBK66194.1| Predicted permease [Bacteroides xylanisolvens XB1A]
          Length = 377

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 112/344 (32%), Gaps = 12/344 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
           +++  IL+ +  L G   P   A +I +  +P+   F  K            +   +  +
Sbjct: 19  VLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + E+  +   +V    +G       S         +L   +    +  
Sbjct: 79  GVTLFYLLVPPMISEIGRMNDLLVTYLTNGAGNNVPKSLSEFIHENIDLQALNRVLSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D  +I++    L  
Sbjct: 139 ILAAIKDTVPRVWTLLAESLNILFSILASFIILLYVI-----FILLDYEAIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|254414198|ref|ZP_05027965.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196178873|gb|EDX73870.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 370

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/326 (14%), Positives = 115/326 (35%), Gaps = 10/326 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ ++++  T  PI +S             ++  + ++ + +   + +      +++ L 
Sbjct: 36  LMISVVLAATLAPIINSAQQ-LGIPRWLAVLLVYLGLLTILVGVGVLIGPTVAQQIQRLF 94

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            ++    +    +   L+   G                +  I S   L          F 
Sbjct: 95  RRLPDYLEVLESLIDRLAVRLGISEPIISQIFDTQTLTNWAIRSSQQLVVRSYGVTRGFL 154

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                + L   LS         +       + + + SL    +        + V + + +
Sbjct: 155 GGILSVILALFLSG--------YMLSGAKRLIKGIVSLFPKPWDDRLAAQVKPVSRRMGN 206

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
              G  +++   G+ +     + G+    + LGVI     +IP   P+     ++ + I 
Sbjct: 207 YIQGRVLVSGILGVAITIGLKVLGITEFALGLGVIAGGTNLIPFFGPVLGAIPALIVAIA 266

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +    +FL   I   +    L P LVG  +++  L     +VGG + +G++G  I P
Sbjct: 267 QGGWTFLWVFLLFVIIQNVETYVLDPLLVGSSVRVHPLYQLLAVVGGAQVLGIIGALIVP 326

Query: 333 VLMALIAVIWKESIMAIKENKEKISS 358
             +A  +V+ +   +  K   E+ ++
Sbjct: 327 PWIAGASVLLENLYLQPKRQAEQQAA 352


>gi|257065925|ref|YP_003152181.1| hypothetical protein Apre_0411 [Anaerococcus prevotii DSM 20548]
 gi|256797805|gb|ACV28460.1| protein of unknown function UPF0118 [Anaerococcus prevotii DSM
           20548]
          Length = 402

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 112/344 (32%), Gaps = 12/344 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVSVMC 72
            L  + G F P +   +I +      + F  K   +          S     ++ V ++C
Sbjct: 34  GLARVVGVFQPFIIGGMIAYLVSIPMNYFERKLRANFPDKKYRKRISALSLFVSWVLIIC 93

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ- 131
             I+ L  L    +  +    ++     +         +           +       + 
Sbjct: 94  CLILFLNILIPRIVAVIFSFFNRWPEFIRETYETLNSHAITRPYADKFYEYVNSFGWYEV 153

Query: 132 -SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  +   T  KTN         +      +     I+F I  L +      + ++ + +
Sbjct: 154 RNAVMNFITDKKTNLFSLTTGVLNSVSSSLITIFTIIVFSIFVLIYKDMLKTNGTRIIYA 213

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L       Y  K+  +     +       I  +    +     ++ G+P+   + +   +
Sbjct: 214 LMSEKKADYINKVLSLSYNTFKDYIFSRLIAVVTLSALTFVGMFIMGIPNAGVISLFVGV 273

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP   PI    +S  ++   +   A    ++  I   I +  + P + G  I LP +
Sbjct: 274 SDLIPIFGPIVGAGLSAVIIFLESPVKALIFLIYDVIIQQIQENIIYPAIAGEKIGLPAV 333

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                +  G    G+ G+ IG  + ++I  ++ E I    + KE
Sbjct: 334 WVLAAITIGGSLFGIWGMLIGIPVASVIYTLFHEFIDNKLKAKE 377


>gi|157964778|ref|YP_001499602.1| permease PerM-like protein [Rickettsia massiliae MTU5]
 gi|157844554|gb|ABV85055.1| Permease PerM-like protein [Rickettsia massiliae MTU5]
          Length = 392

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 120/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + +   +     +     P   A I+ +   P      SK + S+ F + I
Sbjct: 42  MNRTVIFWLVFLGFFISGFMLMSDAVKPFFIAFILSYLLQPAIGFIASKFKISNKFASSI 101

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 102 IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMAKIYSIEP 156

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 157 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 216

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          KI   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 217 ANMQSLLPIKTRPKILKILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 276

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   +          P ++G 
Sbjct: 277 ILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 336

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 337 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 386


>gi|284006304|emb|CBA71539.1| putative inner membrane protein [Arsenophonus nasoniae]
          Length = 369

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/337 (19%), Positives = 131/337 (38%), Gaps = 6/337 (1%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I+ +I    + L+ F    L A ++   +WP++    SK        ++  T+ V+ L
Sbjct: 18  IAILLMITACFWVLRPFILGFLWAGMVVIATWPLFKKIESKLWHKKWLASIAMTLIVILL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQS 132
           F++P   L    +     L+       +  +P   WL ++P  G      W   +++  +
Sbjct: 78  FVIPFAILIGSIIQNSGPLIEWAKSPAEIRLPELLWLKNLPFIGNKLFYGWHTLVANGGN 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I            +    A   G       + ++F  +     +  G S+   +    
Sbjct: 138 TLISKLQPYVGEATSWFLAQAINAGRFMFHLIVMLLFSAL----LFLKGESVISSIRHFA 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L          +  + IR+  LG+ + A+ + ++ G    LA VP    L ++  +  
Sbjct: 194 IRLAGTRGDMAILLAGQSIRAVALGVVVTALIQAIISGIGLALADVPYAAILTILIFVCC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G  +      I+L   G+   A  + +W  I   +    LRP L+     L  +  
Sbjct: 254 VAQLGPLLIMVPSIIWLFWSGDTSWAIIMIVWSIIVATMDG-VLRPILIKMGANLSMILI 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             G++GG+ + G++GLFIGPV++A+   +    +  +
Sbjct: 313 LIGVIGGILSFGVIGLFIGPVVLAVSHNLLTAWMNDV 349


>gi|229191452|ref|ZP_04318436.1| hypothetical protein bcere0002_31140 [Bacillus cereus ATCC 10876]
 gi|228592027|gb|EEK49862.1| hypothetical protein bcere0002_31140 [Bacillus cereus ATCC 10876]
          Length = 376

 Score =  119 bits (298), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +           R   +        E    +++
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRFGESNLLGKIQENLNINVA 155

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      +  T   ++    +  F S    + L + +    +   LF+  +DG  +    
Sbjct: 156 NMVKEYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVM----VPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|229019819|ref|ZP_04176621.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1273]
 gi|229026045|ref|ZP_04182428.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1272]
 gi|228735261|gb|EEL85873.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1272]
 gi|228741490|gb|EEL91688.1| Sporulation integral membrane protein YtvI [Bacillus cereus AH1273]
          Length = 365

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 117/348 (33%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +        L ++ G   P + A    +   P+ +    K +       +++ +
Sbjct: 4   RLIFVIVATVAGFYVLLYMSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLI 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V +     +   +  +         +L +K   
Sbjct: 64  LVFGAIVGLVTYLVTEAISATTYLLQIVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNH 123

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +  +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 124 LGEPQRYTITQNIQNLGTEATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D   ++ ++     +    Y K I   + K +         +     +++     +  V
Sbjct: 184 YDWHHLAHKVRKFLPNRVHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT ++ ++P     +     +  +            L   I + +  + + P
Sbjct: 244 PYAITIAIITGVVDLLPYLGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  L T   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 304 KVLSSNIGLDPLATLIALFVGFKLFGFLGLIIGPVTLVLLNTLHKAHV 351


>gi|229070801|ref|ZP_04204029.1| hypothetical protein bcere0025_29760 [Bacillus cereus F65185]
 gi|229080564|ref|ZP_04213084.1| hypothetical protein bcere0023_32080 [Bacillus cereus Rock4-2]
 gi|229151535|ref|ZP_04279738.1| hypothetical protein bcere0011_30800 [Bacillus cereus m1550]
 gi|229179632|ref|ZP_04306983.1| hypothetical protein bcere0005_29800 [Bacillus cereus 172560W]
 gi|228603835|gb|EEK61305.1| hypothetical protein bcere0005_29800 [Bacillus cereus 172560W]
 gi|228632078|gb|EEK88704.1| hypothetical protein bcere0011_30800 [Bacillus cereus m1550]
 gi|228702665|gb|EEL55131.1| hypothetical protein bcere0023_32080 [Bacillus cereus Rock4-2]
 gi|228712191|gb|EEL64138.1| hypothetical protein bcere0025_29760 [Bacillus cereus F65185]
          Length = 376

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +           R   +        E    +++
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRFGESNLLGKIQENLNINVA 155

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      +  T   ++    +  F S    + L + +    +   LF+  +DG  +    
Sbjct: 156 NMVKDYTVDFTKSLSSVTGNVTGFLSTITEVVLTFVM----VPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|237731304|ref|ZP_04561785.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906843|gb|EEH92761.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 369

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 131/348 (37%), Gaps = 6/348 (1%)

Query: 2   RETMLNPQGIMRWMIM-FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + +  +I+  L+ ++ F      A  I   +WPI            +
Sbjct: 5   RQPRDIAQVLLSVLFLAILIVACLWIVQPFILGFAWAGTIVIATWPILLRLQKLLWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LFI+P+  L    +     L+  V   +     +    S    G    
Sbjct: 65  LAVLVMTLLLVLLFIIPIALLVNSIVDGSGPLIHAVTAGDMTLPDLAWLNSIPLVGAKMY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 GAWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCGLMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    + GVP 
Sbjct: 181 GEQVALGIRHFACRLASKRGDAAILLAAQAIRAVALGVVVTALVQAVLGGIGLAVTGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLAVLMILSCLVQLGPLPVLIPAIIWLYWTGDSTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +     LP +    G++GG+   G++GLFIGPV++A+   ++   +  
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVVLAVSWRLFSAWVNE 347


>gi|118616069|ref|YP_904401.1| hypothetical protein MUL_0177 [Mycobacterium ulcerans Agy99]
 gi|118568179|gb|ABL02930.1| conserved hypothetical transmembrane protein [Mycobacterium
           ulcerans Agy99]
          Length = 385

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/347 (17%), Positives = 131/347 (37%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+ +  +  + +  +L   YFL+ +F  ++ A +  +   P+++ F  +   ++   A +
Sbjct: 7   LSQKRALAIVTLAALLFGAYFLRSYFVLIVVAAVGAYLFTPLFNWFNKRL--NAGLSATL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             ++ + + IVP+  L    ++++  +V  +    +   +      +        + +  
Sbjct: 65  TLLTALVVVIVPVGLLVGLAVVQIARMVENIAGWVKTTDLSSLGDKALQLVNELLARVPF 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H++            +  N   ++  F             S I  +        +   +
Sbjct: 125 LHVTVTAEALRQMMISVAQNVGLWLLHFLQNAAGSLAGAVTSGIIFLYVFMALLLNCEKL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L   L         R +  ++R T +G  +IA+ +G+   ++ ++AG      +
Sbjct: 185 RTLIGQLNP-LGEEVTDLYLRKMGSMVRGTVIGQFVIALCQGVAGAASIYVAGFHHGFFI 243

Query: 245 GVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I    M++IP G  I      I +   GNI     + LW  + +  +D  LRP LV  
Sbjct: 244 FAIVLTAMSIIPLGGGIVTIPFGIGMAFYGNIGGGAFVVLWHLLVVTNIDNFLRPVLVPR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +L           G+   G  G+ IGPVLM LI       ++  K
Sbjct: 304 DARLNSALMLTSAFAGIGMFGPWGIIIGPVLMILIVTTIDVYLVVYK 350


>gi|150392313|ref|YP_001322362.1| hypothetical protein Amet_4632 [Alkaliphilus metalliredigens QYMF]
 gi|149952175|gb|ABR50703.1| protein of unknown function UPF0118 [Alkaliphilus metalliredigens
           QYMF]
          Length = 395

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 123/350 (35%), Gaps = 12/350 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-----------SKKEESSTFLAVIATV 68
           I + L  LK   +PV+  + I +   P    F            +KK+       V   +
Sbjct: 41  IFLRLGILKRILSPVIIGIFIAYLLNPGVRWFENYIYCRVEYIANKKKLLRVLSVVTMYL 100

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L +  ++F+       + +++ ++     +   +    S+       S +  +  +
Sbjct: 101 LVIGLIVTVIIFVAPQIGNNISDILRRMPEYINYSNDLINHWSEELDLRNLSNVTDQFEN 160

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   +     + +    ++ I           L++ L I+     L           + L
Sbjct: 161 NVNDIFNRV-SAILEYILENIIVSIMSITSGVLNFVLGIVISFYLLGDKESFKKGTERVL 219

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +          K   R    +     +G ++ +    ++      + G+   + + VI 
Sbjct: 220 RATLADKTVNKMKDFGREADMIFSKFIIGKSLDSFIIAIMCLIGLQIMGIRYALLISVII 279

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  MIP   P      ++ +    +   A  + L+           L P ++G  + L 
Sbjct: 280 GITNMIPYFGPFIGAVPAVIITFFDSPVKAAWVLLFILGLQQFDGLILGPKILGDSVGLS 339

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +   F ++ G    GL+G+F+G  ++A++ ++    I    E K+++ +
Sbjct: 340 PVWIIFSIIIGGGLFGLMGMFLGVPVIAIVRLLMNRLIDWRLEAKKQVKA 389


>gi|326331167|ref|ZP_08197463.1| putative permease [Nocardioidaceae bacterium Broad-1]
 gi|325951062|gb|EGD43106.1| putative permease [Nocardioidaceae bacterium Broad-1]
          Length = 473

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 111/334 (33%), Gaps = 10/334 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++     ++I+ +L FL     PV+ AL+I     P+     ++     +  A+   +
Sbjct: 98  RFLVIVAAGYLIVRALGFLSIVVVPVVIALLIAALVSPVVDGL-ARVGLKRSISALFVVI 156

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+   I  L F          +L  + V A                           + 
Sbjct: 157 GVLAAVIAMLSFAGTQVANGFTDLAGQTVKALDEIRDWL--------INGPFHASETQID 208

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +                S  G + LD    +  ++ + +FF  +G  I   L
Sbjct: 209 TWLNTVQTTVEDWAAAYASNPFSRVSEVGGVALDVFAGLFIVLFSTYFFCAEGERIWGWL 268

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      +      R+    +        I+A  + + +        +P  VA+GV+ 
Sbjct: 269 VRLAPRAARSRMDSSGRVAWVSLTQFTRATVIVAAVDAVGIMIIAAALQIPFVVAIGVLV 328

Query: 249 AIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + +P        AV++ + +       A  +     +   +    L+PFL+G  +++
Sbjct: 329 FLSSFVPLIGATVAGAVAVLVALVSQGPVTALLMLGGVILVQQLEAHGLQPFLLGRWVRV 388

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L     +  G+   G+ G  +   L+A +  +
Sbjct: 389 HPLGVILAVATGIVLGGVAGALVAVPLVAALNAV 422


>gi|325270826|ref|ZP_08137416.1| permease [Prevotella multiformis DSM 16608]
 gi|324986837|gb|EGC18830.1| permease [Prevotella multiformis DSM 16608]
          Length = 355

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 43/361 (11%), Positives = 120/361 (33%), Gaps = 16/361 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M +T+   + I   +I   IL   +    L G   P   A ++ +  +PI      +   
Sbjct: 1   MAQTITFDKFIRWALIALAILAVGFIINALSGVLLPFFVAWLLAYLLYPIVKFVQYRLHV 60

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  ++  + V  +     LF+    + ++  L+                 + +   
Sbjct: 61  PGRALSILVTLLFVAAVITAIFLFIVPPMIGQIDRLMHVANRYMHETTHTDSLSAIVQRW 120

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  +++  +            +T +                   +   ++    ++ +FF
Sbjct: 121 VMENQIEIERYLKSPDFTNTLKTAMPKLFS------VIGQTASIVLSIIASCITLLYMFF 174

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D  +++++   +       +W  +++ V + + +   G  ++++  G++    + + 
Sbjct: 175 ILLDYETLTEKWIKIFPRNVRPFWAGLAQDVERELNNYIRGQGLVSLCLGILFCIGFTII 234

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELF 290
             P  + +G++  I+ ++P     +        L       +             A+   
Sbjct: 235 DFPMAIGMGILVGILNLVPYLHTFALIPTVFLALLKAADTGQNFWIIFGSALAVFAVVQV 294

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++D  + P ++G  + L        L      +G +GL I   L  LI   W+  +   +
Sbjct: 295 LMDMVITPKIMGKAMGLNPAILLLSLSVWGALLGFIGLIIALPLTTLIIAYWQRYVTKEE 354

Query: 351 E 351
           +
Sbjct: 355 Q 355


>gi|314933212|ref|ZP_07840577.1| putative membrane protein [Staphylococcus caprae C87]
 gi|313653362|gb|EFS17119.1| putative membrane protein [Staphylococcus caprae C87]
          Length = 363

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 105/334 (31%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +              +   + ++ +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNILERW-GFPRWASILTIFIGLIAIIAIVVSFIAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+ +     +    +  +          S      L    + +I        +G
Sbjct: 95  ISNINNLIKQTPALQKEAEHIINF----------SLKQMDKLPDDVTHRINKAVKSVGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +  +   F+     +I +   L +  +D       +    +     +   + +
Sbjct: 145 ATSVLSNSVTYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFIVDLLK 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G++L   Y + G+P    L +   +  +IP   P      
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIILYIGYSIIGLPYTPLLVLFAGVANLIPFLGPWLSFTP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I         + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIEGPTTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A+I  +        +   +K +S+
Sbjct: 325 TLILIAVPLYAVIKTLVSNIFKYRQRIIDKANSD 358


>gi|86141183|ref|ZP_01059729.1| hypothetical protein MED217_04177 [Leeuwenhoekiella blandensis
           MED217]
 gi|85831742|gb|EAQ50197.1| hypothetical protein MED217_04177 [Leeuwenhoekiella blandensis
           MED217]
          Length = 354

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 60/329 (18%), Positives = 129/329 (39%), Gaps = 20/329 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            + + VL A+ +       Y+  + K++      A +A ++   + +VP+         +
Sbjct: 31  PYLSGVLGAITLYVLLRRFYNYLVDKRKWKEGIAAGVAMLASFLVILVPIGLTVMMLTNK 90

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + + V       +             G                    +SE+        +
Sbjct: 91  IGKAVKNSERVVEVVKQQVGVWEADLG------------------FKVSESIDTNAITSW 132

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +      F     +  ++I  M   L++   +   + Q L +    L      +I     
Sbjct: 133 VSTNLQNFAGGTFNVFIAIGIMYFILYYMLVNNDKLHQSLYAFIP-LNKENIARIGHESV 191

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT-AVSI 267
            +++S  LG+ ++A+ +G+V    +++ GVP      VITAI +MIP    +     V+I
Sbjct: 192 AMVKSNALGIPLVALAQGIVALIGFFIFGVPDPFFWFVITAIGSMIPFIGTLLGIVPVTI 251

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            ++  GN   A  + ++G + +   D  +R +++     +  L T  G++ GV   G +G
Sbjct: 252 LMIASGNNLQAVGIAIYGLVVVGSTDNLIRLYVLERLANVHPLVTLIGVIVGVPLFGFIG 311

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L  GP+L++L  ++ K       + + +I
Sbjct: 312 LIFGPLLISLFLLVVKIYKHEYGDPEPEI 340


>gi|256964900|ref|ZP_05569071.1| membrane protein [Enterococcus faecalis HIP11704]
 gi|307272991|ref|ZP_07554238.1| hypothetical protein HMPREF9514_01757 [Enterococcus faecalis
           TX0855]
 gi|256955396|gb|EEU72028.1| membrane protein [Enterococcus faecalis HIP11704]
 gi|306510605|gb|EFM79628.1| hypothetical protein HMPREF9514_01757 [Enterococcus faecalis
           TX0855]
          Length = 366

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 11/342 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 142 FLNQWTQALLSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+       +  V   V LG++  I  MIP  
Sbjct: 202 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYF 261

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 262 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 322 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|256544459|ref|ZP_05471832.1| membrane protein [Anaerococcus vaginalis ATCC 51170]
 gi|256399784|gb|EEU13388.1| membrane protein [Anaerococcus vaginalis ATCC 51170]
          Length = 398

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 119/372 (31%), Gaps = 23/372 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLY----------FLKGFFAPVLSALIIGFTSWPIYSSFISK- 54
            N Q +   +I  ++  + +                 P L   ++ F      + F  K 
Sbjct: 7   KNSQLLKVILISILVFFAFWYIENVKNGLTVFIAVIQPFLIGFMLAFIINLPMNFFERKV 66

Query: 55  ----------KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                     K+    F  + + +  +   ++ L  L       +  L+ +  L     I
Sbjct: 67  YSKIFKTEKTKKLVPVFSLISSWILFILGIVIFLNVLIPRISKAVTALIERFPLFLDDLI 126

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL--KTNGIDFIPRFASRFGMIFLD 162
            +             ++ +   +     L  + + F+    N  D      +      + 
Sbjct: 127 DLLNKNKLTKNFADDAQKYINSVDWNNVLVQVKDYFVGEAGNIFDKTTSIINSVSSTIIT 186

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
              + IF +  L          ++ + SL +        K++ +      S      + +
Sbjct: 187 IAAATIFSVFVLINKKDLKILANRIIYSLFKRSTADEINKVASLSYSSFASYINSKALSS 246

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G+++     +  +P      ++ AI   IP   P+  T + + L+   + F +    
Sbjct: 247 LILGILVFVGMLILKIPFAAMAAILVAIADFIPYVGPLIATVIMMILIFIESPFKSLVFL 306

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  I   +    + P L G  I LP +     +  G    G++G+ +   + +++  + 
Sbjct: 307 IFLLIAQQVQGSIIYPALAGKTIGLPSIWVIVSIAIGGSLFGIVGMLVSIPIASILYTLM 366

Query: 343 KESIMAIKENKE 354
            E +      KE
Sbjct: 367 NEKMDKTLAKKE 378


>gi|323340244|ref|ZP_08080508.1| permease [Lactobacillus ruminis ATCC 25644]
 gi|323092435|gb|EFZ35043.1| permease [Lactobacillus ruminis ATCC 25644]
          Length = 379

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 111/320 (34%), Gaps = 6/320 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFL 81
           F+   FAP+L A  + +   P+ +  +  K      S T    I  + ++ + +  L FL
Sbjct: 40  FISTLFAPILIAGFLFYLLNPLVNLLMKIKVKNHHVSRTAAVAIVFLLLIAIIVSALSFL 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASELWTKHLSHPQSLKILSET 139
               + ++++L+  +    +        +                  ++        S +
Sbjct: 100 IPNILNQVEQLIKNMPEYIRSFQHFLTKIFQQKNLPPWIVDLTKDVDINAYTKEIEESLS 159

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               N +  I         +     ++I+ +   LF+  +DG  +   +  +        
Sbjct: 160 GFAKNFMMSITSSIGSIIGMVTSVTVTIVTVPFMLFYMLKDGHKLVPTVTGVFSEKQANR 219

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++   + + I     G  I  +  G      Y + GVP  + +G+   I  MIP   P
Sbjct: 220 IGELLEKMSETISKYISGQAIECLFVGTCTAIGYGIVGVPFALLIGIFAGITNMIPYIGP 279

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++ L +  ++     + +   +   I    + P ++G  + +  L     L+  
Sbjct: 280 YIGLLPALILAMSNSVKQTILVIIVCVVVQQIDGNLIYPNVIGKSLDIHPLTIIIILLVA 339

Query: 320 VRTMGLLGLFIGPVLMALIA 339
               GLLG+ +   + A+I 
Sbjct: 340 GNLAGLLGMLLAVPVYAVIK 359


>gi|269959791|ref|ZP_06174170.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835545|gb|EEZ89625.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 373

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 120/346 (34%), Gaps = 5/346 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I    +  +I      L  F   V+   II    +P+  S  ++   S    + + +  
Sbjct: 15  AIKIGAVALLIWWCFSILSPFIMLVVWGGIIAIALYPVMMSLHNRLGISKGKASALLSTV 74

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L ++PL+ L         E+V+ +             L +IP       +   + S 
Sbjct: 75  GVLLLLIPLIALSSGLYTSGTEVVTGLQDGTLVVPKPQESLKEIPLVGDKLYVAINYAST 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +++        +             F+ + +S +        F  +     +   
Sbjct: 135 NMEGFLVNYGEQVKGFLSQAASIVGSVSGGFIQFIISTMIAGA----FMSNAEVCQKGFT 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L + L     + +  +    +RS   G+  +A+ + ++ G      GVP+     V   
Sbjct: 191 KLADRLTNKKGEALIDLSKSTVRSVVQGVIGVALIQSVMAGVGMVAVGVPAAALWMVAVI 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++A++     +      IY+    +   A    +W  +     D  L+P L+      P 
Sbjct: 251 LIAIVQLPPILXLIPAIIYVFSVESTLVAGIFLVWCILV-SASDAVLKPVLLSRGSDTPM 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L T  G +GG+   G++GLF+G V+++L   +    +        K
Sbjct: 310 LVTLLGALGGMAMSGIVGLFVGAVVLSLTYQLMVNWLDEDDTEANK 355


>gi|229545594|ref|ZP_04434319.1| permease [Enterococcus faecalis TX1322]
 gi|229549782|ref|ZP_04438507.1| permease [Enterococcus faecalis ATCC 29200]
 gi|255972511|ref|ZP_05423097.1| predicted protein [Enterococcus faecalis T1]
 gi|256619288|ref|ZP_05476134.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256762780|ref|ZP_05503360.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256959202|ref|ZP_05563373.1| membrane protein [Enterococcus faecalis DS5]
 gi|256961703|ref|ZP_05565874.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|257079238|ref|ZP_05573599.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|257084957|ref|ZP_05579318.1| membrane protein [Enterococcus faecalis Fly1]
 gi|257087079|ref|ZP_05581440.1| membrane protein [Enterococcus faecalis D6]
 gi|257090112|ref|ZP_05584473.1| predicted protein [Enterococcus faecalis CH188]
 gi|257419521|ref|ZP_05596515.1| predicted protein [Enterococcus faecalis T11]
 gi|257422339|ref|ZP_05599329.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|293383408|ref|ZP_06629321.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|293388939|ref|ZP_06633424.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|307269611|ref|ZP_07550949.1| hypothetical protein HMPREF9498_01744 [Enterococcus faecalis
           TX4248]
 gi|307275742|ref|ZP_07556882.1| hypothetical protein HMPREF9521_01371 [Enterococcus faecalis
           TX2134]
 gi|307291763|ref|ZP_07571635.1| hypothetical protein HMPREF9509_02062 [Enterococcus faecalis
           TX0411]
 gi|312901794|ref|ZP_07761062.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|312903549|ref|ZP_07762729.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|312907764|ref|ZP_07766755.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|312910382|ref|ZP_07769229.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|312950907|ref|ZP_07769817.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|229305051|gb|EEN71047.1| permease [Enterococcus faecalis ATCC 29200]
 gi|229309252|gb|EEN75239.1| permease [Enterococcus faecalis TX1322]
 gi|255963529|gb|EET96005.1| predicted protein [Enterococcus faecalis T1]
 gi|256598815|gb|EEU17991.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256684031|gb|EEU23726.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256949698|gb|EEU66330.1| membrane protein [Enterococcus faecalis DS5]
 gi|256952199|gb|EEU68831.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256987268|gb|EEU74570.1| conserved hypothetical protein [Enterococcus faecalis JH1]
 gi|256992987|gb|EEU80289.1| membrane protein [Enterococcus faecalis Fly1]
 gi|256995109|gb|EEU82411.1| membrane protein [Enterococcus faecalis D6]
 gi|256998924|gb|EEU85444.1| predicted protein [Enterococcus faecalis CH188]
 gi|257161349|gb|EEU91309.1| predicted protein [Enterococcus faecalis T11]
 gi|257164163|gb|EEU94123.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|291079199|gb|EFE16563.1| conserved hypothetical protein [Enterococcus faecalis R712]
 gi|291081720|gb|EFE18683.1| conserved hypothetical protein [Enterococcus faecalis S613]
 gi|306497215|gb|EFM66760.1| hypothetical protein HMPREF9509_02062 [Enterococcus faecalis
           TX0411]
 gi|306507618|gb|EFM76748.1| hypothetical protein HMPREF9521_01371 [Enterococcus faecalis
           TX2134]
 gi|306514084|gb|EFM82664.1| hypothetical protein HMPREF9498_01744 [Enterococcus faecalis
           TX4248]
 gi|310626792|gb|EFQ10075.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 512]
 gi|310631056|gb|EFQ14339.1| conserved hypothetical protein [Enterococcus faecalis TX0102]
 gi|310633425|gb|EFQ16708.1| conserved hypothetical protein [Enterococcus faecalis TX0635]
 gi|311289655|gb|EFQ68211.1| conserved hypothetical protein [Enterococcus faecalis DAPTO 516]
 gi|311291129|gb|EFQ69685.1| conserved hypothetical protein [Enterococcus faecalis TX0470]
 gi|315027953|gb|EFT39885.1| conserved hypothetical protein [Enterococcus faecalis TX2137]
 gi|315029470|gb|EFT41402.1| conserved hypothetical protein [Enterococcus faecalis TX4000]
 gi|315036687|gb|EFT48619.1| conserved hypothetical protein [Enterococcus faecalis TX0027]
 gi|315144894|gb|EFT88910.1| conserved hypothetical protein [Enterococcus faecalis TX2141]
 gi|315147495|gb|EFT91511.1| conserved hypothetical protein [Enterococcus faecalis TX4244]
 gi|315152250|gb|EFT96266.1| conserved hypothetical protein [Enterococcus faecalis TX0031]
 gi|315156051|gb|EFU00068.1| conserved hypothetical protein [Enterococcus faecalis TX0043]
 gi|315157800|gb|EFU01817.1| conserved hypothetical protein [Enterococcus faecalis TX0312]
 gi|315162384|gb|EFU06401.1| conserved hypothetical protein [Enterococcus faecalis TX0645]
 gi|315167426|gb|EFU11443.1| conserved hypothetical protein [Enterococcus faecalis TX1341]
 gi|315169473|gb|EFU13490.1| conserved hypothetical protein [Enterococcus faecalis TX1342]
 gi|315174798|gb|EFU18815.1| conserved hypothetical protein [Enterococcus faecalis TX1346]
 gi|315575992|gb|EFU88183.1| conserved hypothetical protein [Enterococcus faecalis TX0309B]
 gi|315577896|gb|EFU90087.1| conserved hypothetical protein [Enterococcus faecalis TX0630]
 gi|315580712|gb|EFU92903.1| conserved hypothetical protein [Enterococcus faecalis TX0309A]
          Length = 366

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 11/342 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 142 FLNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+       +  V   V LG++  I  MIP  
Sbjct: 202 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYF 261

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 262 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 322 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|300709901|ref|YP_003735715.1| hypothetical protein HacjB3_02650 [Halalkalicoccus jeotgali B3]
 gi|299123584|gb|ADJ13923.1| hypothetical protein HacjB3_02650 [Halalkalicoccus jeotgali B3]
          Length = 381

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/348 (15%), Positives = 133/348 (38%), Gaps = 12/348 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q  +  + +   ++++  +  +   +L A+++ +   P++           T  A+ 
Sbjct: 44  LTEQSALGVIAIASGILAVLLMLPYLQYILLAVVLAYALMPLHKGLKRIVG--PTASALA 101

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              +     I+P+L++    + +   L   +         +   LS              
Sbjct: 102 LITASFLTIIIPVLYIVVIAVQQASGLTETL---------LEEGLSVTAIQQRLDSSGYS 152

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S+       +      +G+D +               +S+   +  +F   RDG  + 
Sbjct: 153 IDSNDVREAYEANQDPINSGLDGMLGGTLEIIGGIPSIAISLTVTMFVVFGLLRDGDRLV 212

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               ++   +      ++   + +++ ++ +G  I++  + ++LG  +W+  VP  + L 
Sbjct: 213 AWFQTIVP-ISDEVKTELFGRLDRLMWASVIGNVIVSAIQAILLGIGFWVLEVPGAIFLT 271

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+T ++A++P              L+      A  L +   I + + D  +RP ++G   
Sbjct: 272 VVTFLLALLPLIGVFGTWIPVAIYLLIVGRPLAALLMVGYGILVSLSDTYIRPAVIGKSG 331

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +L       G+ GG+  +G +GLF+GPV++    + +        ++K
Sbjct: 332 ELSSAVIVVGIFGGIAVLGPIGLFVGPVILGTAKISFDLFAREWYKSK 379


>gi|32473068|ref|NP_866062.1| hypothetical protein RB4377 [Rhodopirellula baltica SH 1]
 gi|32397747|emb|CAD73748.1| putative membrane protein [Rhodopirellula baltica SH 1]
          Length = 395

 Score =  119 bits (298), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 111/335 (33%), Gaps = 9/335 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +     F+ L +LY  +  F P+L A     T  P+  +   +    S   A    +++ 
Sbjct: 44  IWLCAGFLTLYALYIGRNLFMPILVAGFAYLTLRPVVRAM-GRIGIPSGVAATAIMLAIA 102

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F      L       ++++   +    +    +   L  +              +  +
Sbjct: 103 TVFGTIGYVLSGPAQDMLQQVPGSMPEVKEKLGFIFDHLETVNQATEDIS-----DTADK 157

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                 E  +            S       +    +      LFF    G S+   + S 
Sbjct: 158 ENITSEEKPVPVEIKQPAWTTTSPLIAGTGNAVSFVSIAAALLFFLMAAGDSLIVSVVSS 217

Query: 192 GE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    + ++   V   + S    +T I    G+ +G+A WL G+PS +  GV    
Sbjct: 218 LPSFSSKRRFIEVLEGVQDALSSYLAWVTCINACLGVCIGTAMWLLGMPSPLLWGVAAMF 277

Query: 251 MAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    +        + L+   +   A  +    A    +  + + P L+G  +KL 
Sbjct: 278 LNFIPIVGAMVGIAMVFFVALVSFEHASFAFVVAGTYATLTALEGQFITPTLLGKSMKLS 337

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               F  +V      G+LG+F+   ++  + ++ +
Sbjct: 338 SALVFISIVIWGWMWGMLGVFLAVPILIAVVMVME 372


>gi|15837191|ref|NP_297879.1| permease [Xylella fastidiosa 9a5c]
 gi|9105453|gb|AAF83399.1|AE003904_20 permease [Xylella fastidiosa 9a5c]
          Length = 385

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 129/349 (36%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +  ++++  +L   + L     P + ++ +G+ + P+          S          
Sbjct: 14  RRLKWYVLVGGVLWMAWLLTPVLIPFVLSVFLGWLADPLVKRVE-WAGVSRAMAVCFVFF 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++ L+        ++  L++     +     V   +         S+L T    
Sbjct: 73  LVVLLLLLVLMIFVPLIERQVVTLINTFPQMHDW---VVNTVIPWVEQKTGSQLRTWLDP 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S           +  + SR G + + + +++  + I  F+F RD     +++
Sbjct: 130 EQMIQWMHSNWEQAGGVARGLFGYVSRSGFVMVTWVINLALLPILSFYFLRDWDKWVERV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +     ++     +V+ +   G  ++ +  G +      L G+   + +G+I 
Sbjct: 190 AAAIPRAYIGTVSRLVVEANEVLGAFIRGQFLVMLALGAIYAVGLSLVGLKLGLLIGLIA 249

Query: 249 AIMAMIPGGAPISFT----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +++ IP    I+         I  +   ++     + +   +   +    L P +VG  
Sbjct: 250 GLISFIPYLGAITGVVLALIAVIVQVHGLDLQLLVLVGVVFGVGQLLESYVLTPRIVGDK 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           I L  +   F ++ G +  G +G+ +   + A++ V+ + +     E++
Sbjct: 310 IGLHPVAVIFSVMAGGQLFGFVGMLLALPVAAVVNVLLRYAHGRYIESE 358


>gi|260587707|ref|ZP_05853620.1| membrane protein [Blautia hansenii DSM 20583]
 gi|331084002|ref|ZP_08333109.1| hypothetical protein HMPREF0992_02033 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541972|gb|EEX22541.1| membrane protein [Blautia hansenii DSM 20583]
 gi|330402364|gb|EGG81934.1| hypothetical protein HMPREF0992_02033 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 437

 Score =  119 bits (298), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/372 (11%), Positives = 107/372 (28%), Gaps = 22/372 (5%)

Query: 10  GIMRWMIMF---IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------- 55
            ++ + I+F   I L  +  L     PV+   II +   P+ +    +            
Sbjct: 23  SLLFYFIIFRMDIFLGRIKNLASILMPVICGAIIAYLLIPVVNFQERRIYYILEEKRHLA 82

Query: 56  ------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                 +         A V    +    L  +    +  +  +++      Q+       
Sbjct: 83  LDKKHKKIIRYICIAFALVFAGLVIYSLLAMIMPSILESIISIINDSPRYVQNIRHWLES 142

Query: 110 LSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           L            +   ++    ++   +         +  +        +   +  + +
Sbjct: 143 LLKDNPEWQTTVFDYLNRYSPKIETFLNVEVLPQIKQLLQSLTTGVFGTLVFIKNLLIGL 202

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I  +  +             + ++ +           R + +       G  + +I  G+
Sbjct: 203 IISVYMMAGKEAFVTQSKMLVYAIFDTENANSIVTAFRFIHRTFGGFISGKIVDSIIIGI 262

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +      + G P  + + V+  +  +IP   P      S ++++  N  +     ++  +
Sbjct: 263 LCYIGTSIIGTPYGLLVSVVVGVTNVIPFFGPYLGAIPSAFIILMVNPMHCLYFLIFILL 322

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                   L P ++G    L        ++     MG+ G+ IG  L A+     K    
Sbjct: 323 LQQFDGNILGPKILGDSTGLSSFMVIVAILLFGGLMGIPGMIIGVPLWAVFMAGIKCFRN 382

Query: 348 AIKENKEKISSN 359
              + K   +  
Sbjct: 383 HELKKKAMPTEE 394


>gi|77164019|ref|YP_342544.1| hypothetical protein Noc_0491 [Nitrosococcus oceani ATCC 19707]
 gi|254436267|ref|ZP_05049774.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76882333|gb|ABA57014.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207089378|gb|EDZ66650.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 359

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/339 (21%), Positives = 146/339 (43%), Gaps = 4/339 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  +++ I+ V L  +  +   +L A+I     +P+Y+  + K        ++   
Sbjct: 12  RKNFIMILLVSILAVFLVMIHEYLIAILLAIIFTALLYPVYAWILKKFNGRQVLSSMTTI 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + +  +PLL L      E  ++ + +    +    +P   +           +   L
Sbjct: 72  LLAILMIGLPLLGLLGAVAAEAIQISNSIAPWIEK--KIPDQNASPLHEFPQWLPFADQL 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              ++  +        N   FI    S+     + + ++   M+ A+FFF+  G      
Sbjct: 130 EPYRTRILAKVGEFAGNAGAFIASGISKATQGTIGFIVNFFIMLYAMFFFFIWGPDSLIN 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L       I      V ++T   + II + +G+++G A+W+AG+   +  G I
Sbjct: 190 LIRYLP-LTEKDRSHILEKGLSVTKATLKSILIIGVLQGILVGLAFWVAGIKGAIFWGTI 248

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +++ +P  GAP+ +    IYL+    I  A  + LWG I + +VD  LRP +VG   K
Sbjct: 249 TVVLSAVPGLGAPVVWIPAVIYLIATDQIGWAIGMTLWGIIIVGLVDNILRPRIVGSEAK 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P L      +GG+   G++G+ +GP++ AL+  +    
Sbjct: 309 MPDLLILLATLGGILMFGMVGVIVGPIIAALLITVLDIY 347


>gi|229047016|ref|ZP_04192640.1| hypothetical protein bcere0027_30240 [Bacillus cereus AH676]
 gi|228724307|gb|EEL75640.1| hypothetical protein bcere0027_30240 [Bacillus cereus AH676]
          Length = 376

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGLLFYILHPFVSLLEKK-GVSRIVSIASIYL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 96  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 INVANMVKEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|150400877|ref|YP_001324643.1| hypothetical protein Maeo_0445 [Methanococcus aeolicus Nankai-3]
 gi|150013580|gb|ABR56031.1| protein of unknown function UPF0118 [Methanococcus aeolicus
           Nankai-3]
          Length = 393

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 142/354 (40%), Gaps = 9/354 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + + +  +  + L  +Y +  +   +  +  + + S P+Y            F + I+++
Sbjct: 7   RLLFKLFVSLVSLSLIYTVFPYLDVLALSCALAYMSKPVYDKL------KPKFGSSISSM 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWASELWTKHL 127
             +   IVP++ + +  + ++ E +  + L       +    L +      ++ L     
Sbjct: 61  MCLLFVIVPMVIIGFIILYQILEFLQFLNLNQLDIQNLNLISLINYKLNYLSNILGYNIP 120

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +  K+     L  + ++     A    ++  +  + +I  +   F+F +DG+ I   
Sbjct: 121 IKLEEEKLSQYISLILSYLEPHISTAVSGLLLLPEIAIKLIMGVFITFYFLKDGYHIKNI 180

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +       +    +   + + +  ++ F G  + ++   ++    Y++ GV + + L V+
Sbjct: 181 VLDNIPTEYQLKTQLYLKYLNESYQNLFTGTALTSVAIVIISFIGYFIFGVQNALLLSVL 240

Query: 248 TAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPI 305
           T I A++P          +S+Y LI G+   A  +F++G + L +  D  +RP +V    
Sbjct: 241 TGIFALLPIVGGWGVYIPLSLYYLIIGDFVTAIGIFIFGWVFLSLAPDFVIRPHIVKKES 300

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +  +      +    T+G+ G  IGP+L      ++K          EKI  N
Sbjct: 301 DVHPVVVLLAFLVAPLTLGIAGFAIGPILFGAFDALFKVKSKIKYVENEKIKEN 354


>gi|28211423|ref|NP_782367.1| permease [Clostridium tetani E88]
 gi|28203864|gb|AAO36304.1| permease [Clostridium tetani E88]
          Length = 381

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 41/316 (12%), Positives = 99/316 (31%), Gaps = 1/316 (0%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P       K   S     +   V ++    + +++L       + ++V  +       
Sbjct: 60  LNPFMKFIERKFSLSRKLSILFTYVFIIFFISIFIIYLLPKITYNIIDIVKSIPQFANDA 119

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                 +               +   P  +   +  F+    +D +      F   F+ +
Sbjct: 120 QRCLNKIIIEHNLKEVINSSGMNNLKPDFIIGKTSEFVVQ-ILDKLLSKTWSFTNSFIKW 178

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
               I  I  L+   +      + +         +   +  + +  +I        + + 
Sbjct: 179 IFGFIVSIYVLYDKEKFINIGKKIIFITFNEKNGSKIIEFFKNLHYMIGLYIGTKALDST 238

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G +      +   P  + + +I  +  MIP   P     V+  + I  ++F A  + +
Sbjct: 239 IIGGIAFIGLTILKSPYPLLIALIVGVTNMIPYFGPFIGMVVAFTINIFFSLFKAFAVLI 298

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  +        L P L+GG + L      F +  G    G +G+ +   +MA+I +   
Sbjct: 299 FLFLLQQFDAWYLDPKLIGGKVGLTPFLVIFAVTLGGGLYGPVGMILAVPIMAVIKLYAD 358

Query: 344 ESIMAIKENKEKISSN 359
           ++I      + +   N
Sbjct: 359 KAIKRYDNKRIQQEKN 374


>gi|304439468|ref|ZP_07399377.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372064|gb|EFM25661.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 388

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/367 (12%), Positives = 109/367 (29%), Gaps = 21/367 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKEES 58
                +   +++   L  +  +K           P L +  + F      +       + 
Sbjct: 24  NIRNIVFSAILLIGALFYIEAIKTILLNIIGVTTPFLVSGAVAFVLTIPMNFIEKLLNKV 83

Query: 59  ---------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                         ++  +    +  + +  +    +  +  +   +    Q  I   + 
Sbjct: 84  KSKKFKKFIRPISIILTLILTFGIITLVIALIVPQLINAVVTIEKNLPAIAQKSIDFLKS 143

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            S      +  +L     +   +                I +              +  F
Sbjct: 144 YS--FTEAYGEKLDKFVNNLSWNHLFDRIKGFFDGSNSSIAKSVLGTASGIFGSIANAFF 201

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLF---PAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
             I   +   D   +S Q   L + +F     Y K +  +             I A   G
Sbjct: 202 SFIFTIYILADKEHLSYQAKKLVDAIFLEKAPYVKHVLSMTKNNFYYFVKAQLIKASIMG 261

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +V      + G+P    + VI A   ++P   PI    + +  ++  +   A    + G 
Sbjct: 262 IVTFIMMMILGLPYPSMIAVIAATTDLVPLIGPIIGVFLGVLFILIESPTQALIYAILGI 321

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   +    L P LVG  + +P + + F +V G    G++G+++   L A +  +  E  
Sbjct: 322 VLQQLEGNILDPKLVGNSLSIPPMWSLFAVVVGGSLYGVVGMWLFVPLFATLYKVVSEWS 381

Query: 347 MAIKENK 353
            +  +  
Sbjct: 382 NSRLKTN 388


>gi|126658239|ref|ZP_01729389.1| hypothetical protein CY0110_12607 [Cyanothece sp. CCY0110]
 gi|126620388|gb|EAZ91107.1| hypothetical protein CY0110_12607 [Cyanothece sp. CCY0110]
          Length = 378

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/343 (17%), Positives = 136/343 (39%), Gaps = 5/343 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I  ++I  ++      ++ F   +L  +I+    +P++    ++         V+
Sbjct: 25  IVDLLIRLFLIGLLLAWCFLLIRPFLGILLWGIILAIAVFPVFVWLKNRLGGRRKLAGVL 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + + P+ F+    +   +     +V  N    P P  + ++P      +    
Sbjct: 85  LILLGIAVIVGPVSFVATLFVGNAQTFADNIVSGNLKVPPPPEGIENLPIIGNYVDHIWT 144

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S+     +             +  FA    ++ L + LSII   I       +   ++
Sbjct: 145 SASNNLISVLSKFQPQLEELAKNVLFFAGNMSLVLLKFILSIIVAGI----LTINSKQLN 200

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++  +   + P   +   ++    IR    G+  +++ + L++G    +AG+P    L 
Sbjct: 201 RKIKRVFIRITPQQGEDFLQLATATIRGVTRGIIGVSLIQSLLVGIGLMVAGMPLSGLLT 260

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V++ ++ ++  G         I+         A  L +W  I   ++D  L+P  +   +
Sbjct: 261 VLSLVLCILQIGLGPVVFPSIIFAWYTMGTLKALLLTIW-LIFCTLIDNILKPIFMSQGV 319

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +P L  F G++GG    G+LGLFIGPV+++L   +    +  
Sbjct: 320 SVPILIIFIGVLGGSLLHGILGLFIGPVVLSLGYELLLAWVKQ 362


>gi|283785082|ref|YP_003364947.1| putative outer membrane protein [Citrobacter rodentium ICC168]
 gi|282948536|emb|CBG88126.1| putative outer membrane protein [Citrobacter rodentium ICC168]
          Length = 370

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 64/358 (17%), Positives = 133/358 (37%), Gaps = 6/358 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLRLQKLLWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    S    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNSIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGAAIMAKVRPYLGATTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAFGIRHFACRLAAKRGDAAILLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G     T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLVPAIIWLYWSGETTWGTVLLVWSCVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +     LP +    G++GG+   G++GLFIGPVL+A+   ++   +       ++   
Sbjct: 300 IRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEAPSPTDEPEQ 357


>gi|220916301|ref|YP_002491605.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954155|gb|ACL64539.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 359

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 105/342 (30%), Gaps = 16/342 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +      L+  +    P    + +  +  P+ ++   +   S T  A+  T+ 
Sbjct: 20  RALTVLAVAAGFGFLWLARDLLVPTALGVTLALSVHPVVAALERR-GLSRTLAAIAGTLL 78

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +    L  + +     +     ++             +      + A          
Sbjct: 79  TVAV----LAAIGWVLWDRIAAFAQELPGYEGRLREAAAGIRRHAAHLQAQSEQLVQTPR 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 + ET                     L        ++  L+F   +G     +L 
Sbjct: 135 RPGEVKVQETV-------PWGTLLVGTAQGALTLAGQATVVVFVLYFTLAEGPRFRVKLL 187

Query: 190 SLGEHLFPAYWKKI--SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +       + +     + + +    L    +    G+V  + Y L G+      G+ 
Sbjct: 188 AWADRRPRGRARLLAALEELHRDVEQYMLNRVALNAILGVVTWAVYALYGLEHAAIWGIT 247

Query: 248 TAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           TA++  IP   P        ++ LL  G   +   +     + + +    + P  +G  +
Sbjct: 248 TALLHFIPYVGPALGLFLPTAMALLQYGTAKDVALVAAIYLVLVNVQGNVVDPLFLGKQL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +L  L  F G +      G +GLF+   L++ + ++ +    
Sbjct: 308 RLSPLVVFLGSLFWFWLWGPVGLFLAVPLLSTVRIVCRHLPR 349


>gi|165976179|ref|YP_001651772.1| putative permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|307249977|ref|ZP_07531949.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 4 str. M62]
 gi|165876280|gb|ABY69328.1| putative permease [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|306858037|gb|EFM90121.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 4 str. M62]
          Length = 353

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 101/352 (28%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I    +YF      P+L A++  +           K +     
Sbjct: 10  KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPRLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++   S + L     + +      +    +  +             L +    +    
Sbjct: 70  SLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPELIDYA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    ++  +   +     L    ++ I               +    + + +FF  +D 
Sbjct: 130 MLDSLMNMLKEKILGFGESLLALSVNSIISLV--------GLGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +                +   + + I +   G  +  +  G+V  + +    +   
Sbjct: 182 PLFVRGFIKFLP-KNRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAIFLFFDLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP    +  T       L   G   +   L L   I   +    + PF
Sbjct: 241 LLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 301 LFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 352


>gi|254517117|ref|ZP_05129175.1| permease, PerM family [gamma proteobacterium NOR5-3]
 gi|219674622|gb|EED30990.1| permease, PerM family [gamma proteobacterium NOR5-3]
          Length = 358

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 114/348 (32%), Gaps = 12/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   + ++  +++F+ LV L  +    AP+L+++++ +    + +    +        
Sbjct: 11  RYLFEEESVLLLVLIFLSLVLLATIGDILAPLLASIVLAYLVQGVVNLLC-RLGLPPWLG 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             IA  + M  F   LL L      +   L+++V      G  +   L      +++   
Sbjct: 70  FFIAFTAFMGAFFAVLLGLLPLVWRQSIGLITEVPRMIDQGRDLLEVLPGRYPEVFSQSQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + L   Q         + T  +  IP F        +   + ++ + I +FF  +D  
Sbjct: 130 IDQMLGGIQGEIAGLGQKVVTMTLARIPGF--------MTLLVYVVLVPIIVFFLLKDRA 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I++ L             +I   +     +   G  +  I  G V   ++   G+    
Sbjct: 182 QITRWLAGFLP-ESRPLLNRIWAEMNVQFSNYARGKMVEIIIVGAVSYVSFTGLGLRYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LG++  +  +IP       T       L   G       +     +   +    L P L
Sbjct: 241 LLGLLVGLSVIIPYIGAFIVTVPVAAVGLFQWGLTPEFYWVLAVYVVIQMLDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  +     ++      GL G+F    L  LI  +       
Sbjct: 301 FSEAVNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATLIKAVINAWPKR 348


>gi|182417076|ref|ZP_02948454.1| permease [Clostridium butyricum 5521]
 gi|237668835|ref|ZP_04528819.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182379085|gb|EDT76589.1| permease [Clostridium butyricum 5521]
 gi|237657183|gb|EEP54739.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 389

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 114/350 (32%), Gaps = 16/350 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-------------KKEESSTFLA 63
           + ++L  +  + G   P +    I +    I   F               K+        
Sbjct: 33  IGMLLGKISGVIGILQPFIIGFSIAYILNFILRFFERTIFDFEFVKKLEFKRNSKRAIGL 92

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++       +  + + F+    M  +  L++ + +             D+   +     +
Sbjct: 93  LVTYFVSFIVLYLFIKFVLPQLMDSIVGLINDIPMYISKTTKFID---DLLLKLNIERQY 149

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              ++   +  I       T+ +  +    +       +  L II  I  L    +    
Sbjct: 150 LDLINENFNRFIDYVIRFVTDLLPILGTLLTSVASKIWNIVLGIIISIYLLSDKEKFCAL 209

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             +   ++          +I+           +G  + ++  G++      ++ +P  + 
Sbjct: 210 SKKITYAVFPKAVAEKSIEITHRSNSTFGKFLVGKILDSVIIGILTFFILTVSKMPYAIL 269

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + VI  I  +IP   P      S  +++  +   A    +   +   I    + P ++G 
Sbjct: 270 ISVIVGITNIIPFFGPFIGAIPSFIIILFVSPVKALWFLVIILVIQQIDGNIIGPKILGD 329

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I +      F ++   + +GL+G+ IG  L A++  + KE +    + K
Sbjct: 330 SIGVSAFWILFAILVAGKFLGLVGMIIGVPLFAVVYSLLKEIVEGQLKKK 379


>gi|148360616|ref|YP_001251823.1| transmembrane permease [Legionella pneumophila str. Corby]
 gi|148282389|gb|ABQ56477.1| transmembrane permease [Legionella pneumophila str. Corby]
 gi|307609525|emb|CBW99023.1| hypothetical protein LPW_08081 [Legionella pneumophila 130b]
          Length = 350

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 167/337 (49%), Gaps = 1/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + I++ SLY +  F   ++ A II   ++P+Y+ +           A + T
Sbjct: 6   KELISIGLTVSIVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  LF++PL +L    + E +  ++ +   N+ G   P +  +IP        +    
Sbjct: 66  TLMGLLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      + L          +  + G+        + F ++ LFFFYRDG  +  Q
Sbjct: 126 IGKPGSIKEFLSNLHVTLTPT-SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQ 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G I
Sbjct: 185 IQHIGEYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGFI 244

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           TA+ AMIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+L
Sbjct: 245 TALAAMIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQL 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           PFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 305 PFLAVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|54293714|ref|YP_126129.1| hypothetical protein lpl0767 [Legionella pneumophila str. Lens]
 gi|53753546|emb|CAH15001.1| hypothetical protein lpl0767 [Legionella pneumophila str. Lens]
          Length = 350

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 98/337 (29%), Positives = 167/337 (49%), Gaps = 1/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + I++ SLY +  F   ++ A II   ++P+Y+ +           A + T
Sbjct: 6   KELISIGLTVSIVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  LF++PL +L    + E +  ++ +   N+ G   P +  +IP        +    
Sbjct: 66  TLMGLLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      + L          +  + G+        + F ++ LFFFYRDG  +  Q
Sbjct: 126 IGKPGSIKEFLSNLHVTLTPT-SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQ 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G I
Sbjct: 185 IQHIGEYCLGDRWFRYSDKLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGFI 244

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           TA+ AMIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+L
Sbjct: 245 TALAAMIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQL 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           PFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 305 PFLAVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|269957420|ref|YP_003327209.1| hypothetical protein Xcel_2637 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306101|gb|ACZ31651.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 421

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 99/334 (29%), Gaps = 15/334 (4%)

Query: 13  RWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +I   +   L+    LK    PV  AL++     P+      +          ++ V 
Sbjct: 27  LLLIGTAVAAVLWVMGQLKTIIVPVAVALLLSVLLRPVRDGLERRARFPRGLATAVSVVG 86

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +    +       +    EL  + V                      +E W +    
Sbjct: 87  LVVVVGALISLAGQQIVAGFAELADQAVAGFNEVRNWLAEGPLGIDSGQITEYWDQFADS 146

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         +G   +   A           +  +  +  L FF  DG +I   L 
Sbjct: 147 F-----------TGDGASGLLSGALGAATTVGHLLVGALIALFCLIFFLVDGRAIWTWLV 195

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L          +  R     + +      ++A+ +   +G           + LGV+  
Sbjct: 196 NLLPVNARERMHQAGRRGVVTLSAYVRTQILVALVDAAGIGIGAAFFVPKLALPLGVLVF 255

Query: 250 IMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I + +P    I +     + +L+      A  +         I    L+PFL+G  + L 
Sbjct: 256 IGSFVPIVGAIVTGAIACVVVLVSQGWVAALIMLAIVLAVQQIEGHVLQPFLMGHAVSLH 315

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +     +  G    G++G      L A++  + 
Sbjct: 316 PVAVVLVVAAGSLAAGIIGALFAVPLAAVLNTVI 349


>gi|218135136|ref|ZP_03463940.1| hypothetical protein BACPEC_03041 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990521|gb|EEC56532.1| hypothetical protein BACPEC_03041 [Bacteroides pectinophilus ATCC
           43243]
          Length = 387

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 102/352 (28%), Gaps = 20/352 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------------STFLA 63
           +   + FL     P +    I F             ++                      
Sbjct: 31  VFAGIEFLWDLIFPFVLGAAIAFLLNLPMRGIEKLLKKFMPLIQGKNNSKTSAAERLLRP 90

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V   ++  C+  V  + +       +  + S              WL          E +
Sbjct: 91  VSLLLTFGCVIAVISIVIGVVLPQLVSTMESIGQAFMAWLPQFQDWLQKTFADNPEIEKY 150

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +         S      NG   I        M  +    +    ++   +       
Sbjct: 151 IGDVQIDWVAVFDSVKNFIFNGATNILSHTFSATMGIISGVTTFFIAVVFACYILMQKEK 210

Query: 184 ISQQLDSLGEHLFPAYWKKISRIV----PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +  Q+  + +  F          V     ++  S   G  + A   G +      +  +P
Sbjct: 211 LESQVRRIIKVTFSEKTVGKINYVASLTHRIFCSFITGQCLEACILGFMFFICMLIFRLP 270

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + + V+ A MA+IP         V   L++  + F A    +   +   I    + P 
Sbjct: 271 YALLIAVLIAFMALIPIVGAFIGCIVGALLILLIDPFKALFFVIMFLVLQQIEGNLIYPH 330

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +VGG + LP +     +  G   MG++G+ +   L+++I  +    +   ++
Sbjct: 331 VVGGSVGLPSIWVLMAVTIGGSLMGIVGMLVFIPLVSVIYSLIGSWVRQREK 382


>gi|29376343|ref|NP_815497.1| hypothetical protein EF1798 [Enterococcus faecalis V583]
 gi|227553608|ref|ZP_03983657.1| permease [Enterococcus faecalis HH22]
 gi|256853348|ref|ZP_05558718.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|294779172|ref|ZP_06744581.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300860743|ref|ZP_07106830.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29343806|gb|AAO81567.1| hypothetical protein EF_1798 [Enterococcus faecalis V583]
 gi|227177256|gb|EEI58228.1| permease [Enterococcus faecalis HH22]
 gi|256711807|gb|EEU26845.1| conserved hypothetical protein [Enterococcus faecalis T8]
 gi|294453732|gb|EFG22125.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300849782|gb|EFK77532.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|323480953|gb|ADX80392.1| conserved hypothetical protein [Enterococcus faecalis 62]
 gi|327535361|gb|AEA94195.1| hypothetical protein OG1RF_11508 [Enterococcus faecalis OG1RF]
          Length = 384

 Score =  118 bits (297), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 11/342 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 41  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 100

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 101 LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 159

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 160 FLNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 219

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+       +  V   V LG++  I  MIP  
Sbjct: 220 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYF 279

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 280 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 339

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 340 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 381


>gi|315149794|gb|EFT93810.1| conserved hypothetical protein [Enterococcus faecalis TX0012]
          Length = 361

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 114/339 (33%), Gaps = 11/339 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 142 FLNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+       +  V   V LG++  I  MIP  
Sbjct: 202 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYF 261

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 262 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             G    G+LG+F+   + A+I +I  E +   KEN +K
Sbjct: 322 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKK 360


>gi|227518987|ref|ZP_03949036.1| permease [Enterococcus faecalis TX0104]
 gi|227073559|gb|EEI11522.1| permease [Enterococcus faecalis TX0104]
          Length = 383

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 115/341 (33%), Gaps = 10/341 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES--------STFLAVIATVSVMCLFIVPL 78
           L G  +P ++  +I +             +               ++  + ++ +F++ L
Sbjct: 41  LLGILSPFITGFVIAYLLSGSQKKIEGLLKIPLPVVKKAKHGLSVLLLYLIILFIFVLTL 100

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            ++    +  + +L + +     H +     L D  G +  + +     S  + L     
Sbjct: 101 NYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPERF 159

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T  +  +          FL+  L++I  I AL F       + +    L       
Sbjct: 160 LNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVYK 219

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +       K+         + A   G+       +  V   V LG++  I  MIP   
Sbjct: 220 QTQTWLSTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYFG 279

Query: 259 PISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            I       +  L  G +  A  + L   I   I    + P ++G  + +  +     + 
Sbjct: 280 SIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSIT 339

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 340 IGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 380


>gi|330984387|gb|EGH82490.1| hypothetical protein PLA107_05089 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 351

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 138/350 (39%), Gaps = 6/350 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +I+ ++  +LY L  F   +    +I F +WP       +        A    
Sbjct: 6   EKPIGIALIVGVLFAALYVLSPFAITLAWGALIAFATWPAVKWIE-RTTGRLWVGASAVC 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKH 126
             +  + + PL+ L      +       VV  ++      P W++ +P      +     
Sbjct: 65  FMMFAVVLGPLVALSVSFAGDATVFTHWVVEMSKSTLPESPGWVTGLPWVGSYLDHQWSL 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                    L      ++ I  I   +   G + ++  +S++F      +F+ +G  I+ 
Sbjct: 125 WHEKGPNWFLDVKPYLSSLIHVIIGKSGVLGSVLVEIAISLLFAF----WFHLEGEKITN 180

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                   L      +   I    I     G+   +I + ++    +W+AGVP  + LGV
Sbjct: 181 LAQKALHALIGQASSRYWEIARNTISGVINGVIGTSIAQAVLALIGFWIAGVPGALLLGV 240

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            T  +++IP G P+ +     +L  +G    A  L +W  + +  VD  L+P L+     
Sbjct: 241 GTFFLSLIPMGPPLLWVPAIGWLFYQGETGYAIFLAIWCVVVVSGVDHILKPILISRGGV 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           LP      G++GG+ T+G LGLFIGPV +AL   + +E +         +
Sbjct: 301 LPLPIVLIGIMGGMLTLGFLGLFIGPVCLALSFTLVREWLNQRASTAAAV 350


>gi|295676312|ref|YP_003604836.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
 gi|295436155|gb|ADG15325.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 370

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 127/347 (36%), Gaps = 3/347 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  + +        F   +  ++I+  T +P+              +A +  +  
Sbjct: 20  IRAGLIAILAVFCFRIFAPFLNLMAWSVILAITLYPLQVRLRHTLGGKDGLIATLIILVA 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +VP   L       +++ ++     +    P    ++  P        +    S  
Sbjct: 80  FAVILVPTYALGLAVADSIEKSIAIAKSGSFQIPPPAESVASWPIVGQRVYDFWLQASTD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +                +    +  G   + + +++I   I +    +   S  Q    
Sbjct: 140 LTGLAHKFAPQLKEAGLAVLATVTGLGAGLVIFFVALIIAGILMAHGEKGYHSAVQIASR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P    +I+ +    IR+   G+  IA  + L++G  + + G+P    L +   +
Sbjct: 200 I---SGPGNGVQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFVVKGIPGAGLLALAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++   A +    V  ++++   +  A  +F        + D  L+P ++G  + +P  
Sbjct: 257 LGIMQLPATLITIPVIAFVIVTDGVSTANIIFAVYVFVAGLADNVLKPLMLGRGVAVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               G +GG+ T G++GLF+GPV++A+   ++   +    +  +   
Sbjct: 317 VVLIGALGGMVTGGVIGLFVGPVMLAVGYQLFWRWVRDQPQPTQAAQ 363


>gi|323693991|ref|ZP_08108175.1| sporulation integral membrane protein [Clostridium symbiosum
           WAL-14673]
 gi|323501927|gb|EGB17805.1| sporulation integral membrane protein [Clostridium symbiosum
           WAL-14673]
          Length = 370

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 110/349 (31%), Gaps = 13/349 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-------- 59
            + ++   +   + +S  F+   F P L + +I     P  +    K             
Sbjct: 9   RKALLTAGVTAAVYLSFKFILPLFLPFLVSYLIALILRPSANFLERKLRVKRRGKTYAVP 68

Query: 60  -TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +  I  + ++ L      +      +E  +LV+ V +  Q+       +        
Sbjct: 69  IGVIGGIEMILILALLGAGFFYGGRRLFMEANQLVNAVPVWVQNFDEWLTGMCHSVETFC 128

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +           L   +  F      + +    S FG       +++I  I ++    
Sbjct: 129 RLQEGVLVKMVQDVLLGTARAFKNATMPNLVVNSVSVFGFFIKVAIITVILFIASILSLQ 188

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  ++ +S+        +  + + +     +      +I      +        G 
Sbjct: 189 EMDELRERRYNSIF----RREFSLLGKRLALTGNAWLRTQAVILFLTTCLCILTLIAIGN 244

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P ++  G+   ++  +P     +        L+    +    + L   +  + + + +  
Sbjct: 245 PYYIIAGIGIGLLDALPIFGTGTVLIPWGIFLMLQQKWYQGVMLLGLYLVCYFMREFVEA 304

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L+G  + L  L T   +  G++  G LG  +GPV + LI  + +E   
Sbjct: 305 KLMGKKMGLSPLETLMSMYVGLQLFGFLGFILGPVGLMLIEDLVEEYWK 353


>gi|302385667|ref|YP_003821489.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
 gi|302196295|gb|ADL03866.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
          Length = 375

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 109/319 (34%), Gaps = 2/319 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  FF P +   II   + P+      + +      +V+  V+V+ L I  L FL    +
Sbjct: 31  LLNFFLPFVIGWIIAVIANPLVRFLEKRLKIVRKHSSVMIVVAVLALIITVLYFLLSKLI 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLKTN 144
            E       +    +      + L     G+  +  E     ++   +        +   
Sbjct: 91  SEAAGFAGDIPKYYESAWIEIQKLLLQVEGLLQFLPENIQVSVNQFFTHIGEYLNVMVQK 150

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                   A           +  I  I + + F  D   I + +          Y++ + 
Sbjct: 151 IASPTVTVAGNVVKSIPAALVYTIVTIFSSYLFIVDRDKIMEVIRPYIPAGGTKYFRYLK 210

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +   +++   FL    I      VL + + + GV   + L +I +I+  +P     +   
Sbjct: 211 KDAKRLVGGYFLAQFKIMFIIAAVLAAGFLVLGVNYALLLAIIISILDFLPILGTGTILI 270

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
               + +    +      L   +   ++ + ++P +VG  + L  L T   L  G +  G
Sbjct: 271 PWAVIRLVAGEYAFGFGLLVIYVLTLVLRQVIQPKIVGDTMGLDPLMTLLFLYLGFKISG 330

Query: 325 LLGLFIGPVLMALIAVIWK 343
           + G+ +   +  L+  +++
Sbjct: 331 IAGMILAVPVGMLLINLYE 349


>gi|297572327|ref|YP_003698101.1| hypothetical protein Arch_1804 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932674|gb|ADH93482.1| protein of unknown function UPF0118 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 414

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/334 (11%), Positives = 96/334 (28%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +    ++ ++ + ++ +   F P+  A  +     P+    +  +   S   ++   V 
Sbjct: 25  ILAVLALITVVGIGIHSVADVFTPLFLAFTLVLALRPLGQWLMRHR-APSWLASLTTLVL 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L    L    +        +V              +WL                   
Sbjct: 84  TLTLIAGLLGITVWSLTPVPDMVVEYSSKFESTMYGFLQWLQ-----------------T 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                    ++     ++ I  +          +   +  + IA FF   D      +  
Sbjct: 127 QGINTKDLASYASQVNVNSIVSWTFSLVGTLFSFGGLLSIVAIAAFFLTIDTT--VTRSR 184

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +   +       +  R   K +R  ++  T+  +    + G       +P          
Sbjct: 185 AHIINKDHWNMGEALRGFEKRVRHYWIVTTVFGLVVAFIDGLVLEWMSIPLAWTWAYWAF 244

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   +P    +       +  L+         +F+   +   ++   ++P L G  + L 
Sbjct: 245 ITNYVPNIGFVIGVIPPMLIGLLDSGWQTMMWVFVAYTVINVVIQTFIQPKLTGDIVGLS 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TFF LV     +G+LG  +   L      ++
Sbjct: 305 PSVTFFSLVVWTSIVGMLGSILAVPLTLFFKALF 338


>gi|15613829|ref|NP_242132.1| hypothetical protein BH1266 [Bacillus halodurans C-125]
 gi|10173882|dbj|BAB04985.1| BH1266 [Bacillus halodurans C-125]
          Length = 358

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 112/320 (35%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +Y LK    P+  A II +   P+  +   +         ++   +++ L +   +   
Sbjct: 36  FVYVLKRLLIPLGLAAIITYLFHPLIEAMHRR-GMGRGLAVLLVFGAMIALLVCFAVVGA 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
            Y + +++EL +      +        +          E   + L HP   +  +     
Sbjct: 95  PYVLQQIEELTTSFPTVMKDVEGTVSKM----------EWQIQQLPHPFHNQAENWLNHL 144

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +     R  ++ +   + +I +   + +F +D   I +    +    +    K+
Sbjct: 145 GKKAGNLLGQMERVIVVLIQSMVLLITVPFLVLYFLKDFDLIERAAWYVTPRKWRPSLKR 204

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R V +       G  ++A+   +V   A WL GVP  + LG       +IP       
Sbjct: 205 YVRDVDRSFGRYIRGQLLVALSVAVVSMMALWLIGVPYPILLGGFIGATNIIPYFGAFIG 264

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++      +        +   +   +    L P +VG  + L  +     L+ GV  
Sbjct: 265 AVPALVFAYFESWPVLLATAIALFLLQQLEGNVLSPLIVGHSLHLHPITIILALLVGVEV 324

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL +   ++A++ V +
Sbjct: 325 GGVIGLILAVPILAVLKVTF 344


>gi|323486620|ref|ZP_08091941.1| membrane protein [Clostridium symbiosum WAL-14163]
 gi|323692237|ref|ZP_08106479.1| hypothetical protein HMPREF9475_01342 [Clostridium symbiosum
           WAL-14673]
 gi|323400001|gb|EGA92378.1| membrane protein [Clostridium symbiosum WAL-14163]
 gi|323503699|gb|EGB19519.1| hypothetical protein HMPREF9475_01342 [Clostridium symbiosum
           WAL-14673]
          Length = 414

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/356 (11%), Positives = 114/356 (32%), Gaps = 21/356 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---------------STFLAV 64
           +   ++ + G  AP++   ++ + + PIY+      +                       
Sbjct: 36  VARVIHMIIGIVAPIIYGAVLAYLTTPIYNRVTKAVKLKLLKVWKDEKHVTGLAKAAGTF 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASEL 122
           ++   V+ +       L    +  +  +        Q+     + +   +          
Sbjct: 96  VSVSLVLVIVAGLFQMLIPQMIESLMGIRDSFPTYLQNLYAWIQQVLADNPDIEAMVLSN 155

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  +S    S T +    +       S   +  L +  + +  +I + +      
Sbjct: 156 LQNSVTMAESWLEKSFTNIDMTRLGEFLTGVSSSVLSLLVFIKNWLIGLIVMVYLLNIKD 215

Query: 183 SISQQLDSLGEH----LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           ++S Q   +        +     +  R V ++     +G  + ++  G++      L  +
Sbjct: 216 TLSAQGKKIIYSCMNLKWANNVIEELRFVNQMFGGFIIGKLVDSLIIGIICFIGTSLMKM 275

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  +  +IP   P      + +L++  +        ++  +        L P
Sbjct: 276 PFTLLISVIIGVTNIIPFFGPFIGAIPTGFLVLLVSPVKCIYFLIFILLLQQFDGNILGP 335

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            ++G    L      F ++      G +G+ I     A+I  +   ++    +NK+
Sbjct: 336 KILGDSTGLSSFWVLFSILLFGGLFGFVGMIIAVPAFAVIYDLIARAVHFSLKNKK 391


>gi|54027467|ref|YP_121709.1| hypothetical protein nfa54930 [Nocardia farcinica IFM 10152]
 gi|54018975|dbj|BAD60345.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 422

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 13/302 (4%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + +          ++ V  + L    + F+    +  + +L  +V  +            
Sbjct: 71  MQRLGVPRWIGVFVSLVGSLGLVAGIMTFVVEQFVAGVPQLSDEVTASIHKIQD------ 124

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
                 W                  +      +  D +   A     +           +
Sbjct: 125 ------WLINGPPHLSDEQIRNAGDALVKAIQSNQDSVTSGALTTATVIGHILTGTFLTL 178

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             L FF   G  I + +  +         +    +    +         +A  + + +G+
Sbjct: 179 FILIFFLYSGDQIWEFVTRIVPTKHRERVRLAGELGFGTLVGFVRATVAVAAVDAIGIGA 238

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              + GVP  + L  +  I A IP     ++        L+   +  A  +       + 
Sbjct: 239 GLAILGVPLALPLASLVFISAFIPIIGAFLAGFIAVFIALVTKGLVTALIVLGIIIAVMQ 298

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L+P L+G  + +  L     +  G+   G+ G  +    +A++    +  +    
Sbjct: 299 LESHVLQPLLLGRAVSIHPLAVVLAIAAGLVLGGIAGGLLAVPFVAVMNTAIRSLLAESP 358

Query: 351 EN 352
           E 
Sbjct: 359 EE 360


>gi|330828110|ref|YP_004391062.1| hypothetical protein B565_0410 [Aeromonas veronii B565]
 gi|328803246|gb|AEB48445.1| Putative membrane protein [Aeromonas veronii B565]
          Length = 361

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 140/347 (40%), Gaps = 6/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    +    +  +I+     L+ F   ++ A +I   +WP+            T  A+ 
Sbjct: 8   LAKITLGVLFLSILIISCFLVLQPFLPALVWATMITIATWPLMLMVQRLLWGKRTLAALF 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWT 124
            T+ ++ +F++PL         +   L+      +Q   P   WL  IP  G    + W 
Sbjct: 68  MTLVLLLMFVIPLFMTLANVAEKAPMLIELGTHISQSPPPELLWLQQIPLVGDKLYDFWQ 127

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+    +              ++   A   G++F+ + L++    +        G  +
Sbjct: 128 QILASGGQVLFAKLAPYFGQTARWLASQAGNLGLLFVHFLLTVGICGVLYH----SGEVV 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +  +      L        + +  + IR+  +G+ + A+ +  V G    +AG+P  + L
Sbjct: 184 ATGIRRFAHRLAGQRGDNATVLASQAIRAVAMGVVVTALVQSSVAGVGLLIAGIPYAMVL 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  ++ +   G      A   YL   G+    T L +W  I    +D  LRPFL+   
Sbjct: 244 VVVMFLLIVAQIGPFPVLLACIGYLYWSGDTTWGTFLLVWSLIA-GTMDNFLRPFLIKRG 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             LP +    G++GG+ TMG++GLFIGPV++A+   +    I    +
Sbjct: 303 ADLPLILILVGVIGGLLTMGIIGLFIGPVVLAVGYTLLDAWIKEDDQ 349


>gi|53728982|ref|ZP_00134350.2| COG0628: Predicted permease [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208241|ref|YP_001053466.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae L20]
 gi|303251430|ref|ZP_07337606.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303252319|ref|ZP_07338485.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307256787|ref|ZP_07538566.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|307261245|ref|ZP_07542920.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|126097033|gb|ABN73861.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|302648778|gb|EFL78968.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649662|gb|EFL79842.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306864835|gb|EFM96739.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|306868976|gb|EFN00778.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 353

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 100/352 (28%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I    +YF      P+L A++  +           K +     
Sbjct: 10  KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPRLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++   S + L     + +      +    +  +             L +    +    
Sbjct: 70  SLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPELIDYA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    ++  +   +     L    ++ I               +    + + +FF  +D 
Sbjct: 130 MLDSLMNMLKEKILGFGESLLALSVNSIISLV--------GLGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +                +   + + I +   G  +  +  G+V  +      +   
Sbjct: 182 PLFVRGFIKFLP-KNRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAILLFFDLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP    +  T       L   G   +   L L   I   +    + PF
Sbjct: 241 LLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 301 LFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 352


>gi|323486217|ref|ZP_08091545.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323400435|gb|EGA92805.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
          Length = 370

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 110/349 (31%), Gaps = 13/349 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-------- 59
            + ++   +   + +S  F+   F P L + +I     P  +    K             
Sbjct: 9   RKALLTAGVTAAVYLSFKFILPLFLPFLISYLIALILRPSANFLERKLRVKRRGKTYAVP 68

Query: 60  -TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +  I  + ++ L      +      +E  +LV+ V +  Q+       +        
Sbjct: 69  IGVIGGIEMILILALLGAGFFYGGRRLFMEANQLVNAVPVWVQNFDEWLTGMCHSVETFC 128

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +           L   +  F      + +    S FG       +++I  I ++    
Sbjct: 129 RLQEGVLVKMVQDVLLGTARAFKNATMPNLVVNSVSVFGFFIKVAIITVILFIASILSLQ 188

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  ++ +S+        +  + + +     +      +I      +        G 
Sbjct: 189 EMDELRERRYNSIF----RREFSLLGKRLALTGNAWLRTQAVILFLTTCLCILTLIAIGN 244

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P ++  G+   ++  +P     +        L+    +    + L   +  + + + +  
Sbjct: 245 PYYIIAGIGIGLLDALPIFGTGTVLIPWGIFLMLQQKWYQGVMLLGLYLVCYFMREFVEA 304

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L+G  + L  L T   +  G++  G LG  +GPV + LI  + +E   
Sbjct: 305 KLMGKKMGLSPLETLMSMYVGLQLFGFLGFILGPVGLMLIEDLVEEYWK 353


>gi|269139133|ref|YP_003295834.1| predicted permease [Edwardsiella tarda EIB202]
 gi|267984794|gb|ACY84623.1| predicted permease [Edwardsiella tarda EIB202]
 gi|304559059|gb|ADM41723.1| Putative membrane protein [Edwardsiella tarda FL6-60]
          Length = 365

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 133/346 (38%), Gaps = 6/346 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L         I  +I+  L+ ++ F      A ++   +WP+     +         
Sbjct: 7   KYDLARIIFGSLFIALLIISCLWVVQPFILGFTWASMVVIATWPVLIWLQNHLWGKRWIA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+ T+ ++ LF++P+  +    +     ++     A    +P   WL  +P        
Sbjct: 67  VVLMTLLLLLLFVLPIGMVITSLIGNAGPILDWAANARSWQMPQMEWLQTLPLIGAKLYA 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + L +   L    + ++      FI + A         + L    M++     Y  G 
Sbjct: 127 SWQGLMNEGVLVTKIQPYIGQGITWFITQAA-----HVGGFFLHCSLMLLFSALLYSRGE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++G+   V
Sbjct: 182 DVAFGIRRFAIRLAADRGDAAVILGGQAIRAVALGVVVTALAQSVLAGIGLAISGIHYAV 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+  I  +   G  +       +L   G+   AT L +W  +    +D  LRP L+ 
Sbjct: 242 LLTVVMFICCLAQLGPLLVLIPAVAWLYWSGDNTWATVLLVWSGVV-GTMDNVLRPALIR 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               LP L    G++GG+   G++GLFIGPV++A+   +    I  
Sbjct: 301 LGADLPMLLVLSGVIGGLLAFGMIGLFIGPVVLAVSYRLVSVWISE 346


>gi|218780815|ref|YP_002432133.1| hypothetical protein Dalk_2975 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762199|gb|ACL04665.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 358

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/298 (20%), Positives = 117/298 (39%), Gaps = 4/298 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +K F    L ++++   + P++S  + K +   +  A +  + V+ L ++P   L    
Sbjct: 29  VMKPFLTIFLVSMVLAIIAHPLHSWSLKKTKNRQSLAAGLTVIMVLLLIVLPAFILILML 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E   +V  +    + G+   + +  +       + +   +         S +      
Sbjct: 89  ANESASVVVWINKGLESGLFTDQTVDKLTS---LQKEYLPDVKIDPIEIGKSLSGAAAWL 145

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I  +++             + M+ ALF+F RDG    +    L   L  +   +I  
Sbjct: 146 SKKIISYSATAVGALGSTLWKFVLMLFALFYFLRDGVQALRWAMHLSP-LKQSLENEIID 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              +V RS F G  + A+ +G++ G   + AG+P      V+     +   G  + +   
Sbjct: 205 CFKEVSRSAFYGTFLTAVAQGVLGGIGLFFAGLPPLTWGVVMAFFSMVPVIGTALVWVPA 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +I L   G I +A  L +W  + +   D  LRP L+ G  +L  L  FF L+GG+   
Sbjct: 265 TILLYATGKIGSAIFLAIWCMVVVGASDNVLRPLLMRGKNELHPLLIFFSLLGGLSAF 322


>gi|229162237|ref|ZP_04290206.1| hypothetical protein bcere0009_30140 [Bacillus cereus R309803]
 gi|228621287|gb|EEK78144.1| hypothetical protein bcere0009_30140 [Bacillus cereus R309803]
          Length = 376

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  V           R   +        E    +L+
Sbjct: 96  IVLGLFVFLVVTVIPIIRDQIDALIKNVPYFGHEIERAARRFGESNVLGKIQE----NLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  I  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 152 IDVASIVKDYTVNFTKSISSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       K I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 212 LKFISEQRQPAAKNILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   P+     ++ +    +      + +   I      K + P ++G  + + 
Sbjct: 272 MIVNIVPYVGPVIAITPALIIAFIDSPAMVLKVIIVMMIVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 367


>gi|189426238|ref|YP_001953415.1| hypothetical protein Glov_3189 [Geobacter lovleyi SZ]
 gi|189422497|gb|ACD96895.1| protein of unknown function UPF0118 [Geobacter lovleyi SZ]
          Length = 361

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 80/340 (23%), Positives = 160/340 (47%), Gaps = 4/340 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    ++  +I+  + +       F AP+  ALIIG  ++P Y   +   ++   + A +
Sbjct: 5   LLKTLLVFTLILLGVYLLGKIFLPFLAPIAWALIIGIITYPAYLRLLDLLKQREAWSAAL 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASELW 123
            T++VM +F++P++ L      E+ +    V  +   G    + +  +  P      + +
Sbjct: 65  MTLAVMLVFVLPVVSLVSVLAQEVAQAYQFVSSSVSSGGAEKLLQQWAGQPQWAPYVDKF 124

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +         S       G+  +  F +        + + ++FM+  LFF Y DG  
Sbjct: 125 KTLVGGSSFSLTDSVMANSKEGLAKLLGFLTSLLANSFSFLMDMVFMLFILFFVYLDGER 184

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L+ +   L  +  +K+S++V  V+     G  +  + +G++ G+AY L GVPS + 
Sbjct: 185 VLLWLNRMLP-LEESLQEKLSQVVRDVLSGFIFGTLLTCLVQGILAGAAYLLFGVPSPLL 243

Query: 244 LGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L V+TAI  +IP     + +   ++YL ++G+   A  + LWG + + + D  ++P  + 
Sbjct: 244 LAVLTAIGGLIPVVGTALIWLPAALYLYLQGSAVKAVIMILWGFLAVGMSDNVVKPIFMS 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             + LP LP   G +GG+   G+LG   GP+L+A++  ++
Sbjct: 304 SRVTLPILPIMIGALGGLAAFGVLGAIFGPLLLAILYELY 343


>gi|240171099|ref|ZP_04749758.1| hypothetical protein MkanA1_17441 [Mycobacterium kansasii ATCC
           12478]
          Length = 385

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 123/347 (35%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +  + M  +L   YFL+ +F  ++ A +  +   P+++ F  +   S+   A  
Sbjct: 7   LTQKRALAILTMVALLFGAYFLRDYFVLIVVAAVGAYLFTPLFTWFNKRL--STGLSATC 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             ++ +    +P+  L    ++++  +V  V                        + +  
Sbjct: 65  TVLTALASVFIPVALLVALAVVQVARMVDNVAEWFNTTDPSELGDKVLRLVNDLLARVPF 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H++    +   +          ++                S I  +        +   +
Sbjct: 125 LHVTVTPEMLRNAMISAARTVGTWLLHVLQGAAGSLAGAVTSAIVFLYVFVALLLNRDKL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L   L         R +  ++R T  G  +IA+ +G+   ++ +LAG      +
Sbjct: 185 RTLIGQLNP-LGEEVTDLYLRKMGSMVRGTVNGQFVIALCQGVAGAASIYLAGFHHGFFI 243

Query: 245 GVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I    +++IP G  I      I ++  GNI     + LW  + +  +D  LRP LV  
Sbjct: 244 FAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGVFVVLWHLLVVTNIDNFLRPILVPR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 304 DARLNSALMLLSVFAGIGMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|145592845|ref|YP_001157142.1| hypothetical protein Strop_0279 [Salinispora tropica CNB-440]
 gi|145302182|gb|ABP52764.1| protein of unknown function UPF0118 [Salinispora tropica CNB-440]
          Length = 423

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 102/348 (29%), Gaps = 18/348 (5%)

Query: 12  MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R + + I+  +L      ++    P+  AL++     P     +  +    +    +  
Sbjct: 78  WRLLAIGIVAWALLRVMGQVRIVIIPLAIALLLSALLAPAVGWLLRAR-FPRSLATAVVL 136

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  +   I  L  +    +  +  L  K     +      R                   
Sbjct: 137 VGGLAAVIGTLTLVVNEFIQGLPVLGEKSSQGVRQIQNWLRSGPLRLEDEQLDRYINDVE 196

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                             ID +   A        +     I ++ A FFF RDG  I + 
Sbjct: 197 GW------------LNENIDGLTSGALSTAATVAEVLTGTILVLFATFFFLRDGNRIWRF 244

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L             R   + + +      ++A  + L +G    +  +P  + L  +
Sbjct: 245 LVRLMPVNARWKVDDAGRASWQTLGAYVRATVLVACIDALGIGIFLVIFEIPFALPLAAL 304

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP     +S     +  L+      A  +         +    L+P ++G  + 
Sbjct: 305 VFLASFIPIIGATLSGGVAVLVALVDSGPITALIILGVVIGVQQLEGHVLQPLIMGRAVA 364

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  L    G+  GV   G+ G  I   L+A++    +           
Sbjct: 365 IHPLAVIVGIAAGVVLAGVTGALIAVPLIAVLNTAVRRLAARTVPETP 412


>gi|307247744|ref|ZP_07529782.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307252335|ref|ZP_07534232.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
 gi|306855774|gb|EFM87939.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306860257|gb|EFM92273.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 6 str. Femo]
          Length = 350

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 100/352 (28%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I    +YF      P+L A++  +           K +     
Sbjct: 7   KQKFNDPQTVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPRLL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++   S + L     + +      +    +  +             L +    +    
Sbjct: 67  SLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPELIDYA 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    ++  +   +     L    ++ I               +    + + +FF  +D 
Sbjct: 127 MLDSLMNMLKEKILGFGESLLALSVNSIISLV--------GLGIYAFLVPLMVFFLLKDK 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +                +   + + I +   G  +  +  G+V  +      +   
Sbjct: 179 PLFVRGFIKFLP-KNRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAILLFFDLRYP 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP    +  T       L   G   +   L L   I   +    + PF
Sbjct: 238 LLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVVPF 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 298 LFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 349


>gi|269928762|ref|YP_003321083.1| hypothetical protein Sthe_2852 [Sphaerobacter thermophilus DSM
           20745]
 gi|269788119|gb|ACZ40261.1| protein of unknown function UPF0118 [Sphaerobacter thermophilus DSM
           20745]
          Length = 378

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 104/342 (30%), Gaps = 4/342 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + LV L         +     +        +  + +         ++  +S++
Sbjct: 41  ILILSLMVGLVLLVRAAPTILTISLGGALLALILSFPTRLLERL-MPRAVAILLTMLSLV 99

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++ LL L    + ++  L+  +      G  +   L D+   +    L +       
Sbjct: 100 ATLVLVLLILVPILIEQLSGLIDSIPDLADAGDRL---LVDVIVALQERGLVSPDTQAVI 156

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                      T   + +            D  +    +I    +   D   +      L
Sbjct: 157 EDVRQGALERATQVAESLLANILGAASSVFDLGVKTFGIIFVAIYLVIDSRRVKAAYLRL 216

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      +       +     G+TI  + +G + G A W+ GVP  + LG   ++ 
Sbjct: 217 TPSHYRRDAMVLWDEFGSSLSRYLGGLTISLLVQGALSGIALWILGVPYPLLLGAWVSLT 276

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP          ++ L    +      + +       +    L P + G  +++  + 
Sbjct: 277 AIIPYLGAFLGAIPAVLLGFYQSPTTGVLVIVLYIAIQQVESNLLTPRIQGQAVRVHPII 336

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               ++      GL G      ++A++ V+       ++   
Sbjct: 337 VLLSVIAASEIDGLRGAIFAVPILAVLRVLLDFLAARVRVRP 378


>gi|228910420|ref|ZP_04074235.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 200]
 gi|228849186|gb|EEM94025.1| Sporulation integral membrane protein YtvI [Bacillus thuringiensis
           IBL 200]
          Length = 344

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 114/330 (34%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG- 145
                L+  V +     +   +  +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 146 ---------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  I    + F          ++F+++A FF   D   ++Q+   L  +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYDWHRLAQKARKLLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLKKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               +     +  +            L   I + +  + + P ++   I L  L T   L
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVAL 300

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             G +  G LGL IGPV + L+  + K ++
Sbjct: 301 FVGFKLFGFLGLIIGPVTLVLLNTLHKANV 330


>gi|330504109|ref|YP_004380978.1| hypothetical protein MDS_3195 [Pseudomonas mendocina NK-01]
 gi|328918395|gb|AEB59226.1| hypothetical protein MDS_3195 [Pseudomonas mendocina NK-01]
          Length = 354

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 113/349 (32%), Gaps = 12/349 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +     + Q ++  +++ +    +  L G  APVL+ L++ F    + +    + +    
Sbjct: 9   LHRYFSDEQAVVLAVLLVLGFAVVLTLGGMLAPVLTGLVLAFLMQGLVNGLE-RLKVPQV 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +     +    V +L L      ++  L +++         V   L +    +   
Sbjct: 68  LAVWLVFTLFLGGLAVFMLVLMPLLWQQLSTLFNELPRMAAEWQSVFLLLPERYPNLITD 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + +   +                +   F+     + +   + ++ + I +FFF +D
Sbjct: 128 AQIVQLIDSMRGE--------AGKFGQWALSFSLSSLPVLVSVMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ISQ   S       A   ++++ + + I +   G  I  I  G+V   A+   G+  
Sbjct: 180 REQISQWFRSYLPRE-RALITQVAQEMNQQIANYIRGKFIEIIICGVVTYIAFAYLGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  +  ++P    +  T       L   G       L +   I   +    L P
Sbjct: 239 AALLALLVGLSVVVPYIGAVVVTVPVALIGLFQWGWSDQFLYLMVVYGIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVINAWPR 347


>gi|313672439|ref|YP_004050550.1| hypothetical protein Calni_0474 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939195|gb|ADR18387.1| protein of unknown function UPF0118 [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 356

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 123/344 (35%), Gaps = 10/344 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   ++F++++    L+        A +I +   P+      K +    F  ++ 
Sbjct: 8   NLRTIVTLSLLFLLVIFYVKLQSVINMFAIAFLISYLLIPLVHFVEDKLKIGRVFSVILI 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
                 + ++ L+ +      E+  L   +       +     ++DI          T  
Sbjct: 68  FSVFSGMVVLFLIIVIPLLYAEIFNLFKNLSSY---AVIFIEKINDIFKKYNYQLDLTAL 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                S      + L    ++ +    +          L    + I +F+F +D   I +
Sbjct: 125 KQLMLSKLNEHGSELFKGSLNILTSIITSI-----STLLGFFVIPILVFYFLKDFEFIFK 179

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +  S  +          +     +++  F G  ++    G++ G    L G+    A+G 
Sbjct: 180 KGVSFIKTRLRIDIDYYNYQFNSILKGYFRGQLMVCFILGILYGVVDLLVGIKGGFAIGF 239

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           I+ +++ IP    I+    SI +  L  G+I +   + +   +        L P LVG  
Sbjct: 240 ISGLLSFIPYLGFITGFVSSIIISYLQFGDILHPLLVVVGFMLVQSFESYFLTPKLVGEH 299

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + L  +   F L  G   MG+ G+ +   L A I ++  + +  
Sbjct: 300 LGLHPIAVIFALFAGGYLMGIGGMILSIPLAAFIKIVINKFLDD 343


>gi|307265414|ref|ZP_07546970.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|326390340|ref|ZP_08211899.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306919528|gb|EFN49746.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|325993617|gb|EGD52050.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 354

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 110/341 (32%), Gaps = 2/341 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL+      P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLFAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L             +   L D     + +
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRIRMYYVT 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++ +      +     +  +   F     ++    +  ++A FF  +D
Sbjct: 126 LPPNITSLIENNMQSIL--NYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 184 KQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFDY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG++  I+  +P     +         I    +      L     + +V + + P +
Sbjct: 244 PFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVVVVRQMIEPKI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           VG  I L  L T   +  G +  G LGL IGPV + +   +
Sbjct: 304 VGQSIGLHPLVTLLSMFIGAKLFGALGLVIGPVFVVVFKAL 344


>gi|196249921|ref|ZP_03148616.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
 gi|196210435|gb|EDY05199.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
          Length = 372

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 106/343 (30%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ + L++ Y++     P + A  I     P+ +    K +        +  +
Sbjct: 11  RFLIVIAVVVLGLMAAYYVSTVTYPFIIAFFIALLINPLVNFLERKTKMPRWLAVSVTLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +       ++ L    +   + L   V    Q  I      +         +L     S
Sbjct: 71  VLFAAVAGIVILLIAEIVSGTQYLADVVPEKFQALIAYMESFAANQLIPLYQDLAVLFKS 130

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              + +      ++  G             + +   +      +     IF ++A FF  
Sbjct: 131 LNDNQQDTIMQNVQAVGTQIATTVGEFIQRVLQNIPQLLAWLPNAATVFIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   + + +            K +   + + +         +     +++     +  V
Sbjct: 191 KDWHRLMRMIQQWLPAKARTSGKTVFLDLKRALFGFIKAQATLISITTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +I   + ++P           I                   I + +  + + P
Sbjct: 251 DYAITIALIIGFVDILPYLGTGIVFVPWIIYAAVSGDIPFAIGLGVLYIVVLVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G + +G LGL  GPV++ +I  +
Sbjct: 311 KVLSSSIGLDPLATLIALFVGFKLLGFLGLIAGPVILVIIRTL 353


>gi|310659285|ref|YP_003937006.1| hypothetical protein CLOST_1981 [Clostridium sticklandii DSM 519]
 gi|308826063|emb|CBH22101.1| conserved membrane protein of unknown function [Clostridium
           sticklandii]
          Length = 389

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 117/353 (33%), Gaps = 14/353 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-------------EESSTFL 62
           ++ +I   +  L  F   +  A I+      I      +              +      
Sbjct: 31  VLSVIGYVVSLLTPFIVGLCIAFILNVIMRLIEDFLKKRLEQSTNTKNPSKIEKWIRPIS 90

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASE 121
            +++   V+ +  + L  +       ++ +  +     +         L+ +P  + +  
Sbjct: 91  LLLSLSLVVAMVWILLFLIVPEFKNTVEIVSKEFPDFMKKIQNWLGGILASLPFEINSIA 150

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               +            +   +   +      S      L++ L ++F I  L       
Sbjct: 151 FSDLNWEKIGQWISQFLSRGSSALFNTTIGITSSIFSALLNFVLGLVFAIYVLLQKETLS 210

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + L +            I+++   +  S   G  + A+  G++      +  +P  
Sbjct: 211 KQFKKLLYAYLPENIVIEILDIAKLSNGIFSSFVTGQFLEAVIIGVLCFIGMLILRLPYA 270

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +  +    A+IP       T V ++L++  +   A    ++  +   +    + P +V
Sbjct: 271 LVVSALVGFTALIPVFGAFIGTIVGVFLILMVSPIKALWFVIFFLVLQQLEGNLIYPKVV 330

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GG I LP +     +  G    G+LG+ +G  L +++  + ++S+      KE
Sbjct: 331 GGSIGLPSIWVLVAVTLGGSAYGVLGMLLGVPLSSVLYSLLRKSVHKRLAKKE 383


>gi|190150093|ref|YP_001968618.1| permease perM-like protein [Actinobacillus pleuropneumoniae serovar
           7 str. AP76]
 gi|307263427|ref|ZP_07545043.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189915224|gb|ACE61476.1| putative permease perM-like protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871305|gb|EFN03033.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 353

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 101/352 (28%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I    +YF      P+L A++  +           K +     
Sbjct: 10  KQKFNDPQAVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPRLL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++   S + L     + +      +    +  +             L +    +    
Sbjct: 70  SLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPELIDYA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    ++  +   +     L    ++ I               +    + + +FF  +D 
Sbjct: 130 MLDSLMNMLKEKILGFGESLLALSVNSIISLV--------GLGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +                +   + + I +   G  +  +  G+V  + +    +   
Sbjct: 182 PLFVRGFIKFLP-KNRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAIFLFFDLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP    +  T       L   G   +   L L   I   +    + PF
Sbjct: 241 LLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 301 LFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 352


>gi|29347686|ref|NP_811189.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339587|gb|AAO77383.1| putative permease [Bacteroides thetaiotaomicron VPI-5482]
          Length = 377

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 110/344 (31%), Gaps = 12/344 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
           +++  IL+ +  L G   P   A +I +  +P+   F  K            +   +  +
Sbjct: 19  VLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCSLFLITLV 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + E+  +   +V    +G       +         +L   +    +  
Sbjct: 79  GVSLFYLLVPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRILSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D   I++    L  
Sbjct: 139 ILAAIKDTVPRVWALLAESLNILFSILASFIILLYVI-----FILLDYEVIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTVLLAILKAADTGENFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      MG+LG+ I   L  L+   ++  I+  + 
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKER 357


>gi|15596204|ref|NP_249698.1| hypothetical protein PA1007 [Pseudomonas aeruginosa PAO1]
 gi|107100448|ref|ZP_01364366.1| hypothetical protein PaerPA_01001473 [Pseudomonas aeruginosa PACS2]
 gi|116048935|ref|YP_792264.1| hypothetical protein PA14_51300 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893033|ref|YP_002441902.1| hypothetical protein PLES_43181 [Pseudomonas aeruginosa LESB58]
 gi|254239344|ref|ZP_04932667.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|254245280|ref|ZP_04938602.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|296390635|ref|ZP_06880110.1| hypothetical protein PaerPAb_20876 [Pseudomonas aeruginosa PAb1]
 gi|9946917|gb|AAG04396.1|AE004533_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|115584156|gb|ABJ10171.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126171275|gb|EAZ56786.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
 gi|126198658|gb|EAZ62721.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
 gi|218773261|emb|CAW29073.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58]
          Length = 357

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 113/355 (31%), Gaps = 12/355 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +    G  APVL+A++I F    +      +      
Sbjct: 9   MQRYFSDEEAVVLAIMLVLGFSVILAFGGMLAPVLAAMVIAFLIQGVVGMLE-RFRVPHL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F   +     + L  + L+ L      ++  L +++         V   L +    + + 
Sbjct: 68  FAVWLVYSLFLGLLALFLVVLLPLLWQQLFTLFNELPRMLGEWQSVLLMLPERYPSLISE 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   K +   +                +    +     + ++  + ++ + I +FFF +D
Sbjct: 128 EQVLKAIETARGEF--------GQIGQWALTSSLASLPVVVNVMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                               K++   + + I +   G  I  +  G V   A+   G+  
Sbjct: 180 KKRFHTWFHRYLPRE-RGLMKQVWAEMNQQIANYIRGKVIEIVITGAVTYIAFAYLGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  +  ++P    +  +     I     G       L +  AI   +    L P
Sbjct: 239 AALLALLVGLSVVVPYIGAVVVSVPVAMIAFFQWGWSDQFIYLMVAHAIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L    + L  +     ++      G  G+F    L  L+  +       + E  
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLVKAVLDAWPKDLPETP 353


>gi|157961490|ref|YP_001501524.1| hypothetical protein Spea_1665 [Shewanella pealeana ATCC 700345]
 gi|157846490|gb|ABV86989.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 382

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 106/336 (31%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + ++ I     P+ S     +         +A +
Sbjct: 12  KGFAISAFIVVILAGIKAASPIVVPFVLSVFIAVICNPMISWMTRHRAPR-----GLAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++ L     I    W+ +            + L+
Sbjct: 67  LLMVFIVLMGLWLASVVGTSINEFSKQLPLYRDQLIEQFSWVVEKLAAFNIQISKEQILA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +            +     D     +Q+
Sbjct: 127 YFDPGVALSMTTNMLSGVGSVMANLFLIILTVVFILFESNGFSTKMHLALDDPDMRLKQV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                     +    +  T++++  GL++G   +  GV   +  GVI 
Sbjct: 187 DRFL----------------NSVNQYMVIKTLVSLATGLIIGVGLYFIGVDYALLWGVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     S+ L         A  + L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVLLAFIQLGPGAAGGVALLYLGTNMVMGNAVEPRYMGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 326


>gi|148984606|ref|ZP_01817874.1| hypothetical protein CGSSp3BS71_01142 [Streptococcus pneumoniae
           SP3-BS71]
 gi|147922997|gb|EDK74112.1| hypothetical protein CGSSp3BS71_01142 [Streptococcus pneumoniae
           SP3-BS71]
          Length = 316

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 100/299 (33%), Gaps = 6/299 (2%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
            + PI +      + +     +I   +++   ++ +++L    + ++  L+         
Sbjct: 1   MTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGVVYLLPILINQLSSLIISSQTIYSR 60

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
              +   LS+ P            +        LS   +  N ++ +           + 
Sbjct: 61  VQDLIIDLSNYPALQNLD------VEATIQQLNLSYVDILQNILNSVSNSVGSVLSALIS 114

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             L +I   + L +F  DG      L+         +   + + +   I     G++I A
Sbjct: 115 TVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRLHIAGLLKNLNATIARYISGVSIDA 174

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           I  G +    Y + G+   +   + + +  +IP   P       I   I  +        
Sbjct: 175 IIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVGPSIGLIPMIIANIFTDPHRLLIAV 234

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++  +   +    L P +VG  +K+  +     L+      G++G+ +     +++  I
Sbjct: 235 IYMLVVQQVDGNILYPRIVGSVMKVHPITILVLLLLSSNIYGVVGMIVAVPTYSILKEI 293


>gi|258545629|ref|ZP_05705863.1| PerM family permease [Cardiobacterium hominis ATCC 15826]
 gi|258519096|gb|EEV87955.1| PerM family permease [Cardiobacterium hominis ATCC 15826]
          Length = 365

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/359 (11%), Positives = 101/359 (28%), Gaps = 12/359 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + NP  +        ++   YFL  +  PV+ ++ + +    I      +        
Sbjct: 14  RFLANPSLVALVAFGISLIAIFYFLGEWLLPVIISIALAYLLEGIIGKLE-RIGVRRAIA 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +     +   +   + L    + + K L+S +    Q        L      +++   
Sbjct: 73  VSLVFFLFIAAILYLTVVLLPAIIDQAKLLISALPDYFQRVQEYILLLPHKFPTIFSESG 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L                N    +         + +   + II + + LFFF +D  
Sbjct: 133 VQSLLDSINGEI--------ANFSKSLSGKLFYSVFVLIKALVYIILVPLLLFFFLKDKK 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   L            + +   V   I +   G     +   L+      +  +   +
Sbjct: 185 LIMAWLGRFLP-KRREIIQDVWYEVDIQIGNYIRGKISEILVVWLLTFIPLHIFNLQYSL 243

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L  +  +  +IP       T   + +     G   +   +         +    + P +
Sbjct: 244 LLSFMVGLSVLIPYIGATIVTIPVLVVAYMQYGLSSDFYWVSGLYFAVQILDGNVIVPLI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               + +  +     ++      G  G+F    L  ++  + +      K+  ++  + 
Sbjct: 304 FSEAVNIHPVAIIIAVLVFGGLWGFWGIFFAIPLATVVKAVMEAWRRYQKKGGDEGEAE 362


>gi|229158199|ref|ZP_04286266.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           4342]
 gi|228625157|gb|EEK81917.1| Sporulation integral membrane protein YtvI [Bacillus cereus ATCC
           4342]
          Length = 344

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 113/330 (34%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG- 145
                L+  V +     +   +  +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVAFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 146 ---------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  I    + F          ++F+++A FF   D   ++Q++     +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFVLLATFFISYDWHRLAQKVRKFLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               +     +  +            L   I + +  + + P ++   I L  L T   L
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLIAL 300

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             G +  G LGL IGPV + L+  + K  +
Sbjct: 301 FVGFKLFGFLGLIIGPVTLVLLNTLHKARV 330


>gi|119716027|ref|YP_922992.1| hypothetical protein Noca_1793 [Nocardioides sp. JS614]
 gi|119536688|gb|ABL81305.1| protein of unknown function UPF0118 [Nocardioides sp. JS614]
          Length = 387

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 96/311 (30%), Gaps = 16/311 (5%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P    F         +  +   V+ +    + L+ +      +++ +           
Sbjct: 92  LNPAVEFFERH-GMRRPYAVLTVIVAALAALGLFLVAIVPVITDQVQSITDNAPDWLDSL 150

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                           +    +  +    +  + E     N +  +       G+  L  
Sbjct: 151 QQ--------------NRRIQELDAEYDVIDKVKEYVSDGNYVSTLFGGVLGIGLAVLSA 196

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
             +   +I+   +F        + L  L           +   V + +     G  I+A+
Sbjct: 197 LANAFIVIVLTLYFLASLDKTKKALYQLAPASRRERVALLGDRVLRGVGGYVSGAFIVAM 256

Query: 224 GEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
             G+      ++ G+    VAL  + A++ +IP         V   +    +        
Sbjct: 257 CAGISSLVFLFIVGLGQYAVALAFVVALLDVIPMIGATIGAVVVTAIGFAEDPRIGIACI 316

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  I   + +  + P ++   + +P   T    + G   +G++G  +     A I ++ 
Sbjct: 317 VFYVIYQQVENYVIYPRVMSRSVDVPGAVTVIAALVGAALLGVVGALLAIPTAAAILMLT 376

Query: 343 KESIMAIKENK 353
           +E ++  ++ +
Sbjct: 377 REVVVRRQDAR 387


>gi|111221300|ref|YP_712094.1| hypothetical protein FRAAL1860 [Frankia alni ACN14a]
 gi|111148832|emb|CAJ60510.1| hypothetical protein; putative membrane protein; putative IMP
           dehydrogenase / GMP reductase domain [Frankia alni
           ACN14a]
          Length = 408

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 102/331 (30%), Gaps = 14/331 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++I+L+++  ++    P+++ L+I     P+   F  +        A  A  
Sbjct: 75  RLIIIGAAVYILLMAIGRVRVVVIPIIAGLLIAALIHPLAHRFQ-RLGLPRLGAAFAALF 133

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +     + + +    E+  +  +V    +                   +L      
Sbjct: 134 VFFAVLAGAAVAVGFNAANEIPTVSDQVSEGVEQIRGYLTNGPFHLSQSQIDDLVDDIRR 193

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +              N    +         +  +    ++  + + FFF  DG  I   +
Sbjct: 194 N------------LANNRGRLVSGVISGASVAAEVITGLLVALFSTFFFLYDGDRIWDWI 241

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +          +   R     I     G   +A  +   +       GVP    L ++T
Sbjct: 242 VTRFPAGAEDRVRGAGREAWLTITGYIRGTVFVAAVDAFGIAMGLVGVGVPLVAPLALLT 301

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                +P     ++  A  +  L+ G + +A  +         I    L+P ++   ++L
Sbjct: 302 FFGGFVPIIGATVAGVAAVLVTLVSGGVTDALIILAVVLAVQQIEGHLLQPLVMRRAVRL 361

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     L  G    G+ G       +A++
Sbjct: 362 HPLAIVIALSAGGVLAGIPGAIAAVPFVAVV 392


>gi|307245623|ref|ZP_07527709.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|307254581|ref|ZP_07536414.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307259035|ref|ZP_07540765.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306853325|gb|EFM85544.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|306862469|gb|EFM94430.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306866702|gb|EFM98560.1| Permease PerM [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 350

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 43/352 (12%), Positives = 101/352 (28%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   +PQ +    I+ I    +YF      P+L A++  +           K +     
Sbjct: 7   KQKFNDPQAVALLGILLIGFGIIYFFSDLIMPLLIAIVFAYLLEWPIKLLTQKLKFPRLL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++   S + L     + +      +    +  +             L +    +    
Sbjct: 67  SLILVLGSFISLSTFLFVVMLPTLWNQAVTFIRDLPSMLNLLNAWLEALPEHYPELIDYA 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    ++  +   +     L    ++ I               +    + + +FF  +D 
Sbjct: 127 MLDSLMNMLKEKILGFGESLLALSVNSIISLV--------GLGIYAFLVPLMVFFLLKDK 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +                +   + + I +   G  +  +  G+V  + +    +   
Sbjct: 179 PLFVRGFIKFLP-KNRRLAANVWFEMQQQIANYIRGKVLEILIVGIVTYAIFLFFDLRYP 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP    +  T       L   G   +   L L   I   +    + PF
Sbjct: 238 LLLSVAVGLSVLIPYIGAVLVTIPVALVALFQFGLSTDFYYLLLAFVISQLLDGNLVVPF 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  L     ++      G  G+F    L  L+  +        +E
Sbjct: 298 LFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALPSNEEE 349


>gi|319763353|ref|YP_004127290.1| hypothetical protein Alide_2671 [Alicycliphilus denitrificans BC]
 gi|330825587|ref|YP_004388890.1| hypothetical protein Alide2_3027 [Alicycliphilus denitrificans
           K601]
 gi|317117914|gb|ADV00403.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           BC]
 gi|329310959|gb|AEB85374.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           K601]
          Length = 352

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/321 (22%), Positives = 129/321 (40%), Gaps = 3/321 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L      +   +++     P++   + +        A I     + + I+P++F+    
Sbjct: 25  ILWPLNGAIFWGVVLAILFTPLHRRLLRRMPRRRNLAAFITLCICLVIVILPMVFIGISL 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E      +      +     + +       W  EL  +      +      T +    
Sbjct: 85  VQEASVAYERARSGQLNYGAYLQQVLAALPA-WVLELLDRFHLTSMAELQARLTAVGAQA 143

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F+   A   G   L + +S   M+  LFF  RDG  ++ ++      L   +  +++R
Sbjct: 144 SQFLATKALDVGQNTLQFIVSFGVMLYLLFFLLRDGPRLAARIRQAIP-LDTEHKNQLAR 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
               VIR+T  G  ++A  +G + G  +W+ G+   V  GV+ A ++++P     + +  
Sbjct: 203 KFTTVIRATVKGNIVVAAAQGALGGLIFWILGIQGPVMWGVLMAFLSLLPAVGASLIWGP 262

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           V+IY L  G+   A  L  +G   + +VD  LRP LVG   K+P        +GG+   G
Sbjct: 263 VAIYFLATGSTGQAAILTAYGVGVIGLVDNLLRPLLVGKDTKMPDYVVLISTLGGMALFG 322

Query: 325 LLGLFIGPVLMALIAVIWKES 345
           L G  IGPV+ AL    W   
Sbjct: 323 LTGFVIGPVIAALFMATWDLF 343


>gi|302874704|ref|YP_003843337.1| hypothetical protein Clocel_1829 [Clostridium cellulovorans 743B]
 gi|307690683|ref|ZP_07633129.1| hypothetical protein Ccel74_21186 [Clostridium cellulovorans 743B]
 gi|302577561|gb|ADL51573.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 342

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 111/330 (33%), Gaps = 13/330 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   I+L    F +        A I+ +   PI+ S     +      A +  ++     
Sbjct: 20  IFTIILLFYFKFTRDVIFVFFMAFILSYFLKPIHLSISRNGKYKR-LCAGVLVLTFFSAI 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I  ++FL    + E   +V  + +  ++   +   +  + G      +     S+ ++  
Sbjct: 79  IFVIMFLLPLIVRESNNIVGTLAVMEKYIQQINSKMESMRGNKLVQSVIINISSNSENYI 138

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +    I                  L    + I +++   D   I ++L  +   
Sbjct: 139 KTQGEKIVNLLIKL------------GHSSLEYSIVPIVVYYILADSELIFKRLTMMISP 186

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            +   +K+I   + +++    +   I+     ++      +  +     L +I     +I
Sbjct: 187 NYRKVYKEIFSDIDRILSKYIICQFILCSIIAILTFIVLAIFHIKYPFLLALINGFFNII 246

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   PI     +I +    +      + ++  +   I    + P + G  + L  +    
Sbjct: 247 PYFGPIIGAIPAILVAALQSHNKVIYVAIFLYLIQQIEGDLISPKITGEFVDLHPMVVLL 306

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++ G +  G +G+ +      ++ +++++
Sbjct: 307 LIIIGGKVGGFIGMVLAVPAGVILKILYED 336


>gi|225027992|ref|ZP_03717184.1| hypothetical protein EUBHAL_02261 [Eubacterium hallii DSM 3353]
 gi|224954706|gb|EEG35915.1| hypothetical protein EUBHAL_02261 [Eubacterium hallii DSM 3353]
          Length = 382

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 118/344 (34%), Gaps = 2/344 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ + I  ++++ +  L GFF P +++ I+   + P+ +      + +  + + +  V
Sbjct: 13  ETVIFFGIAVLLIIGIPKLMGFFWPFVASWILALLATPLCNFLEKHIKLNKKWSSAVIIV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKH 126
            V+                E+  L S       +     +   D    +    S  + K 
Sbjct: 73  LVLLALAGIGYLAVTKLGRELMGLFSGAPEYYVYVQRTIKSFGDSLTNIVSPISSDFGKQ 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    +  +     +                    +  +  + MII+ +FF  D   +++
Sbjct: 133 IQGFFTDFLSQMGGIINKFAPKGVEMMGSAAADLTNGFIGTVVMIISAYFFIADRERLTE 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +      +  + I   V   +    L    I     ++L + ++L G P  + L +
Sbjct: 193 GFWRIVPEDLKSTVRDIKDKVIAALGGFLLAQFKIMCIVFVILLAGFFLMGNPYALLLAL 252

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + + + ++P     +              +      +   +   +  + L+P ++   + 
Sbjct: 253 VISFVDLLPILGTGTILIPWTLFCFVQRDYRQAMFLIILYVVCLVARQFLQPKMIADSMG 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L  + T   +  G +  G+ G+ +  +   +I  +++  +   K
Sbjct: 313 LDSMATLVLIYTGYKLNGMKGMILALLAGVIILSLYRLGLFDRK 356


>gi|293401382|ref|ZP_06645525.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305020|gb|EFE46266.1| putative membrane protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 405

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/354 (11%), Positives = 104/354 (29%), Gaps = 14/354 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-----------KKEESSTFLAVIATV 68
           ++    F+   F  +L A++  +          S            ++        +  +
Sbjct: 37  VVNGFDFVLSLFRSLLYAIVFAYVLNLPMKKIESFIIRHTKETSLLRKRKRMVSMFLTFL 96

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW---ASELWTK 125
               L I+    +    +  +  L+  +       +     +       +     +   +
Sbjct: 97  IAFLLLIIIGSIILPSIIDSLISLMQNLSSFFTDIVKNIDEILKYFHIDYRIEDIQQVEQ 156

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +  P    + +     +     I   AS F   F       +F +  L         + 
Sbjct: 157 FIKMPWEKIVSNAIAFLSGSASGILSSASNFISSFAVGFTGFMFSLYLLSGKENFIRQLR 216

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   +   +       + +  V ++  S   G    A    ++      L   P    + 
Sbjct: 217 KVTAAFCGYDASLIVFQYASRVNRIFSSFIGGQLTEACILWVLYYVCMRLFQFPYPELIC 276

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + A+ +++P    +   +V   +++  +   +    ++  +  +  D  + P +VG  +
Sbjct: 277 TLIAVCSLVPVFGSMFAMSVGAIMMLSHDPLQSIWFIVFYQVISYFEDNVIYPRVVGNSV 336

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            LP L     +       G+ G+ +     A + V + E I      K     N
Sbjct: 337 GLPGLWVLLSIFVFGDLWGVFGMVMAVPTTACLYVFFAEFINNRLRKKRLRIEN 390


>gi|170078184|ref|YP_001734822.1| hypothetical protein SYNPCC7002_A1575 [Synechococcus sp. PCC 7002]
 gi|169885853|gb|ACA99566.1| conserved hypothetical protein (PF01594) [Synechococcus sp. PCC
           7002]
          Length = 402

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 109/349 (31%), Gaps = 20/349 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK------------KEESSTF 61
           ++++   L  L+ +K F   +L+A+I+      +     +                  +F
Sbjct: 9   FIVLLSSLYILWQIKAFLLLLLTAVILANALNVLVVKLQTWGDRLADRFNQPLLRMGRSF 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
               A   V  +  + L  +    + + + L SK+                     +   
Sbjct: 69  AVFTALFIVALILWLALTIVIPPFIGQFQILFSKLNTGFYEIDEWLDSQILKIEENFGLP 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +  +  +  + +         +  ++ +           L   L+++ + +    F  D 
Sbjct: 129 ISEQLPNLDEIIPQ------ISTLLNELLNRGWSLFSDSLKVLLNVLLLTVLTLMFLADP 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               Q    L    +     +I  +    ++    G+    +  G++        G+   
Sbjct: 183 QPYRQGFIRLFPSFYRRRADEILTLCDADLKGWVSGIMFNMLCIGVLSYVGLLTLGLSLA 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   ++  ++  IP   P       I + +    +    + +   +   +    L P+++
Sbjct: 243 LPQAILAGLLTFIPNIGPALSVIPPILIALLEAPWKIWAVLILYFLIQQVEGNVLTPWVM 302

Query: 302 GGPIKLPFLPTFFGLVGGVRT--MGLLGLFIGPVLMALIAVIWKESIMA 348
              + L    T    V    T  +G  GLF+   L  +  VI +E ++ 
Sbjct: 303 ARQVSLLPAVTLLAQVLFAVTLQLGFFGLFLALPLAVIGQVIVREVLVK 351


>gi|86157174|ref|YP_463959.1| hypothetical protein Adeh_0747 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773685|gb|ABC80522.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 381

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 63/326 (19%), Positives = 121/326 (37%), Gaps = 6/326 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +K F+     A ++             +     +  A + TV V+   +VP+  L   
Sbjct: 28  WMVKPFWVAFFLAAVLTAALRRWMEWLSGRLRGRRSLAAGLLTVGVLLAGVVPVAALGAV 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E  + +  +  A Q                  +      L  PQ             
Sbjct: 88  LIREAVDGIQWLRSALQSEGVWGLVSRLPGPIEDLAHRAVTALGDPQRQLQQLAGEQGGQ 147

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    +  G     + L  + M+IALFFF  DG  +   +D+         ++ + 
Sbjct: 148 AAAAVGGVLAATGT----FVLQTVLMLIALFFFLTDGQRLIAWVDARVPLRAGQ-FRTLV 202

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
               +   S        A  + +   + Y +A  P+ + L V+T ++A+IP         
Sbjct: 203 EDFRRTTLSVVAATAATAGIQTVTALAGYLIARAPNPIFLAVLTLVVALIPAVGATAMVL 262

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           AV+      G+  +   L +WGA  + +VD   RP+L+ G ++L     FF L+GG+   
Sbjct: 263 AVAALQFATGHTVSGIFLAIWGAAVVSLVDNVARPYLLKGGMELHGGVVFFALLGGLAAF 322

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAI 349
           G +GL +GP+++  +  +       +
Sbjct: 323 GGIGLILGPLVVTFLVTVLNMYRREL 348


>gi|254227295|ref|ZP_04920727.1| hipothetical membrane protein [Vibrio sp. Ex25]
 gi|262396438|ref|YP_003288291.1| hypothetical protein VEA_001141 [Vibrio sp. Ex25]
 gi|151939907|gb|EDN58733.1| hipothetical membrane protein [Vibrio sp. Ex25]
 gi|262340032|gb|ACY53826.1| putative membrane protein [Vibrio sp. Ex25]
          Length = 382

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 123/341 (36%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +I  +++ +   +K F  PV+   II     P+               A  
Sbjct: 17  MVESAIRIGLIFVLLMFTYDIIKPFILPVIWGAIIAVALMPLTKKLERAYGGRRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + PL+ +    +      +  +             ++D P           
Sbjct: 77  IALLGIALLVTPLVMVSGSIVDGATHALEVLQNGQVKIPGPKPSVADWPVVGDKLYEVWT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I +      +                L   L  I  +     F     S +
Sbjct: 137 LFATNLEQAIQTFMPQIKSA----LTSLLGTLGGVLGSLLLSILSLAIAAGFMTYSESAA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L 
Sbjct: 193 SGLRTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I  I+ +    A ++   V  ++ +  +   AT   +W  +   + +   +P L+G  +
Sbjct: 253 LILMILCIAQLPALLAVLPVIGFMYMTQDTTTATMFTVW-VVVAALSENLFKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +P      G +GG+   G++GLF+G V++A+   ++   +
Sbjct: 312 DVPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWL 352


>gi|229147156|ref|ZP_04275514.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST24]
 gi|228636266|gb|EEK92738.1| Sporulation integral membrane protein YtvI [Bacillus cereus
           BDRD-ST24]
          Length = 344

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 114/330 (34%), Gaps = 10/330 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           + G   P + A    +   P+ +    K +       +++ + V    +  + +L    +
Sbjct: 1   MSGLIYPFIIAFAFAYLINPVVNFLNQKLQFPRALAVLVSLILVFGAIVGLVTYLVTEAI 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG- 145
                L+  V +     +   +  +         +L +K     +  +      ++  G 
Sbjct: 61  SATTYLLQLVTVKFPDIVTFAQQFALNHIMPLYDDLISKFNHLGEPQRYTITQNIQNLGT 120

Query: 146 ---------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  I    + F          ++F+++A FF   D   ++Q+   L  +  
Sbjct: 121 EATTQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFISYDWHRLAQKARKLLPNRV 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             Y K I   + K +         +     +++     +  VP  + + +IT ++ ++P 
Sbjct: 181 HGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRVPYAITIAIITGVVDLLPY 240

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               +     +  +            L   I + +  + + P ++   I L  L T   L
Sbjct: 241 LGTGAVFVPWVIYVFFTGDTAFAIGLLILYIVVIVQRQIMEPKVLSSNIGLDPLATLVAL 300

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             G +  G LGL IGPV + L+  + K ++
Sbjct: 301 FVGFKLFGFLGLIIGPVTLVLLNTLHKANV 330


>gi|253572141|ref|ZP_04849545.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838321|gb|EES66408.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 377

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 115/344 (33%), Gaps = 12/344 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++  IL+ +  L G   P   A +I +  +P+   F  K    S  +++   + ++ L 
Sbjct: 19  VLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCALFLITLV 78

Query: 75  IV-PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            V     L    + E+  +   +V    +G       +         +L   +    +  
Sbjct: 79  GVSLFYLLVPPMVSEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRILSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D   I++    L  
Sbjct: 139 ILAAIKDTVPRVWALLAESLNILFSILASFIILLYVI-----FILLDYEVIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTVLLAILKAADTGENFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      MG+LG+ I   L  L+   ++  I+  + 
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKER 357


>gi|307725764|ref|YP_003908977.1| hypothetical protein BC1003_3746 [Burkholderia sp. CCGE1003]
 gi|307586289|gb|ADN59686.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1003]
          Length = 652

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 101/349 (28%), Gaps = 16/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+   +   +++ +LYF +    P+  ++++ F   P+  +   +          IA + 
Sbjct: 24  GLASVITGVVVVCALYFGRAVLIPITLSVLLSFLLAPLVQTL-RRLHMGQLPSIFIAVLF 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +     +    +    +L    V   Q    V          +      T     
Sbjct: 83  ALAALLAIGALIGAQLVQLASDLPQYQVAIEQKIETVQEKTIGRADSLMTRAAATLQRVA 142

Query: 130 PQSLKILSETFLKTNGIDFI-------------PRFASRFGMIFLDYCLSIIFMIIALFF 176
           P        T         +              + A R     +    +   +++   F
Sbjct: 143 PSKPPPPRPTGRAARNAPAVPTPVEVHEPSPTPLQLAQRALSPAIAPIETTFIVLVVTIF 202

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L SL                   +   F+    + +  G V+     + 
Sbjct: 203 ILLQREDLRDRLISLFGSRDLHRTTTAINDAAVRLSRYFVAQLGVNLSAGGVIAIGLAII 262

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDK 294
           GVP  +  GVI A++  +P         ++++L   I+     A    +   +   +  +
Sbjct: 263 GVPGALLFGVIAALLRFVPYIGIWIAALLAVFLAAAIQPQWTMAVYTLILFIVVDVVAGQ 322

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              P L G    L  L      +      G +GL +   L   +  + +
Sbjct: 323 IAEPLLYGHRSGLSPLAVVVAAIFWSWLWGPIGLVLSTPLTLCLVTLGR 371


>gi|91793005|ref|YP_562656.1| hypothetical protein Sden_1649 [Shewanella denitrificans OS217]
 gi|91715007|gb|ABE54933.1| protein of unknown function UPF0118 [Shewanella denitrificans
           OS217]
          Length = 360

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 120/358 (33%), Gaps = 11/358 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +P  I   +I+  + + LYF  G  AP+L AL++ +      +   ++   + T  A
Sbjct: 12  RFSDPHAITLVLILTSLALLLYFAAGLLAPILVALVLAYLLEWPVAQV-ARIGVNRTTGA 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +  + L ++    L      +   L++ +      G+      S       + E  
Sbjct: 71  SLVLILFIGLVLLMAFGLVPSLWKQGAALITDLPSMLDKGLQTVTVYSQQYPQFISQEQI 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  +++ +  +  L T  +    R    +    L   +  I + + +FFF +D   
Sbjct: 131 -------EAMILELKKLLDTEHLLDFGRQLLGYSASLLVLMVYAILVPLLVFFFLKDKQE 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +                +K+   + + I +   G  I  +  G+     + +  +     
Sbjct: 184 LIASSKRFFPSK-RDLARKVWFEMNQQIFNYIRGKVIEIVVVGVASYIFFAVMDLRYAAL 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LGV+T    +IP       T     +     G       L L   I   +    L P L 
Sbjct: 243 LGVLTGFSVLIPYVGATLVTLPIALVAFFQWGFSSEFGYLMLGYGIIQALDGNVLVPLLF 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              + L  +     ++      G+ G+F    L +L+  +        ++ + K+ S 
Sbjct: 303 SDAVDLHPVLIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPNDQQQTQPKLDSE 360


>gi|310829307|ref|YP_003961664.1| hypothetical protein ELI_3745 [Eubacterium limosum KIST612]
 gi|308741041|gb|ADO38701.1| hypothetical protein ELI_3745 [Eubacterium limosum KIST612]
          Length = 395

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/383 (10%), Positives = 108/383 (28%), Gaps = 30/383 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-----------LYFLKGFFAPVLSALIIGFTSWPIYS 49
           M       Q I+  +++ ++L +              +    +P +    I F      S
Sbjct: 1   MEMNRKTKQAIIGMIVLALVLWAGLKNIDAVWGTFLGIISLGSPFIIGAGIAFVLNIPMS 60

Query: 50  SFISKK------------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
               +                     + A + ++ +  + +  +    +           
Sbjct: 61  LMERRLFTKRWLKGKRVQRLRRPLSILAAFLILIGIMALVVFLVLPELVNAALLFARSFP 120

Query: 98  LANQHGIPVPRWL-------SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
              +        +       S     +    L + +                   +    
Sbjct: 121 SVLESFQSWASRILGEHSEASAFIQKLDTGGLESLNWDMLSKNLFSFFRGGAAGFLSTTL 180

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A+          + ++  +  LF   R G    + L +           +I  +  + 
Sbjct: 181 NVAASVAGGVFHTVIGLVVAVYLLFQKERLGLQTRKLLYAYLPEKRVDRLLEIVGLTQET 240

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
                 G  I A+   ++      +  +P  + + V+  + ++IP    I    +  +L+
Sbjct: 241 FSHFVSGQCIEALILTVIYTIILSILQMPYALTIAVLIGLFSLIPVFGAIVACCLGAFLI 300

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +  +   A    +   I   +    + P +VG  I L  L     +  G    G+LG+ +
Sbjct: 301 LTLSPVKALIFVVACFIVQHVEGNLIYPHVVGSSIGLSPLWILAAVTIGGGAFGILGIIV 360

Query: 331 GPVLMALIAVIWKESIMAIKENK 353
              L +++  +  E++      +
Sbjct: 361 MIPLFSVLYTLTGETVNRRLSQR 383


>gi|188589827|ref|YP_001920518.1| permease [Clostridium botulinum E3 str. Alaska E43]
 gi|188500108|gb|ACD53244.1| permease [Clostridium botulinum E3 str. Alaska E43]
          Length = 343

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 115/318 (36%), Gaps = 13/318 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K     ++ + I+ +   PI   F SK +      +V+  + ++ LFI  +  +    +
Sbjct: 33  IKSIVNILMISFILAYIIAPIRDLFQSKFKIKKKVASVLIILIILGLFISCITLVIPELV 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E    +S + +   +       +           L + +    +               
Sbjct: 93  KE----ISNIGVIFDNIANFLEDMYIKFRVDSFPILKSIYNELMEK---------GNILF 139

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +      ++ ++  +S   + + +++F  DG  I  +L  +         KKI   
Sbjct: 140 LNLSKSLFNNIVLIVENIVSCAVIPVVVYYFLCDGDKIYNKLLFILPTEKREVTKKILND 199

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + KV+     G   ++I  G +      +  V   + + ++ AI+ +IP   PI     +
Sbjct: 200 IDKVLGRYITGQVFLSIIIGFLTFILLIIFKVKFPIWISILNAILNIIPYFGPIFGGVPA 259

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +   A  + +   I   I    L P +      +  +     L+ G +  G +
Sbjct: 260 VLVALLDSPIKALWVTIGVFIIQQIEGNILSPKITADSTDMHPVMIIILLLIGDKFGGFI 319

Query: 327 GLFIGPVLMALIAVIWKE 344
           G+ +   +  +I V++ +
Sbjct: 320 GMLLAVPVGVIIKVLYDD 337


>gi|269797532|ref|YP_003311432.1| hypothetical protein Vpar_0468 [Veillonella parvula DSM 2008]
 gi|269094161|gb|ACZ24152.1| protein of unknown function UPF0118 [Veillonella parvula DSM 2008]
          Length = 373

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 119/374 (31%), Gaps = 23/374 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSS 50
           M+E     Q I   ++  I+++    +             F P++    I F    +   
Sbjct: 1   MKEFKYYKQLIGAIILAGIMIMMALRISDIASGLDAIFTAFVPLIVGACIAFVLDILVVR 60

Query: 51  FISKKEE----------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
           +                      +++ V++  +            +  M  +V+      
Sbjct: 61  YERWLWPKCDSGWKYKIRRPLSLLLSFVTISVIVYFIARLALPQLIHSMSIIVAASPQLY 120

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                   W+  I   +  +   T   +              T G  +I           
Sbjct: 121 TDFQT---WMQHITETIPMASNQTIIDALSGENLAKYTREWGTKGGTYIVNAMGTVLSWT 177

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           L+  L +IF +  L    R      + L +     +      ++R+  +   + F+G  I
Sbjct: 178 LNIGLGLIFAVYMLLDKERLMLQGKRILKAYASDEWVNRVSYVTRVAVQTFSNFFVGQFI 237

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            A+  G+++G   WL  +     +  +  +  +IP         +   +L+  +  +A  
Sbjct: 238 DALVLGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYVGGIIGAVMLLTVSPMDALI 297

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +   +   I    + P +VG  + LP L  F  ++ G   MG+ G+ IG  L+A    
Sbjct: 298 YVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGSLMGVTGMLIGVPLVATCYK 357

Query: 341 IWKESIMAIKENKE 354
           +    +     + E
Sbjct: 358 LIMTDVDGRLASNE 371


>gi|209963738|ref|YP_002296653.1| hypothetical protein RC1_0400 [Rhodospirillum centenum SW]
 gi|209957204|gb|ACI97840.1| conserved hypothetical protein [Rhodospirillum centenum SW]
          Length = 391

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 98/344 (28%), Gaps = 9/344 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++  +  +L+        +  A++       +                VI  +
Sbjct: 31  RRVLIALLLVGLAATLWLASHALLLLFGAILFAVAIRGLAGLLRRVLPVGEETSVVIVLL 90

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA--------- 119
            ++ L              +  ++  +V  + Q      R        +           
Sbjct: 91  ILLALAGGVGFLFGSQISQQFSKVAQQVPDSLQKLEDTLRSTGWGQQLLALTGGVPLTGD 150

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                             +      G+ ++ R A    +        ++ ++    +   
Sbjct: 151 GGQGGGQGGGQGGAGAAPDGGSGGAGLGWLVRQAGSVAVAITGALGDLLLVLFGAVYLAF 210

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                   ++ L          +        +     GM +  +  G +     WL GVP
Sbjct: 211 QPGLYRAGIEKLVPKDRTDQIVRALDATGGALWKWSAGMLVEMVLVGALTMVGLWLLGVP 270

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + +ALG+I   +  IP   PI     +I L    +   A    L+      +    + P 
Sbjct: 271 APLALGLIAGTLEFIPIVGPILAAIPAILLAFTVSPDLALWTALFYVALQQVEGNLILPL 330

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +    + LP + + F L+      G +G+ +   L      + +
Sbjct: 331 IQRRAVALPPVVSLFALLVFGSLFGAIGVLLAVPLAVTAMTLVQ 374


>gi|77360080|ref|YP_339655.1| permease (PerM) [Pseudoalteromonas haloplanktis TAC125]
 gi|76874991|emb|CAI86212.1| putative permease (PerM family) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 357

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 112/357 (31%), Gaps = 12/357 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   +P  +    ++  ++  LYF+     PVL ALII +           +        
Sbjct: 11  KKFSDPHSVTLLFLLLALVALLYFIGSLIVPVLVALIIAYLLDWPVLHLE-RFGLRRFTA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            VI  +    + +  +L +      +   L  +     + G      L      +  +E 
Sbjct: 70  TVIVMLIFTGIMLTLILVIGPVLWQQTSNLFQETPHMVEQGKSFLLALPAQYPSLITAEQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +   ++  I             +   +       + + + +I + + +FF  +D  
Sbjct: 130 VQTIVLTVETKVIE--------FGQVVLSVSLTSLKDAVAWLIYLILVPLLVFFMLKDKL 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +S  +  L          ++   + + I +   G     +  G V   A+ +  +    
Sbjct: 182 ELSHSIAKLIPQQRRLIM-QVWNEMNQQIMNYIRGKVFEILIVGSVSFIAFTVLDLRYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+     +IP       T     + L   G       + +   I   +    L P L
Sbjct: 241 LLGVLVGFSVLIPFVGAALVTIPVAAVALFQFGIETQFWTILIIYGIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               + L  +     ++      G  G+F    L +L+  +        +E  +++S
Sbjct: 301 FSEAVDLNPVFIIVAVLFFGGLWGFWGVFFAIPLASLVKALINAWSSTQEEIIKELS 357


>gi|251771895|gb|EES52469.1| conserved hypothetical protein [Leptospirillum ferrodiazotrophum]
          Length = 369

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 68/323 (21%), Positives = 142/323 (43%), Gaps = 3/323 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  +  P+L A I+ F ++P+ +    +        A++ TV  + L I PLL      
Sbjct: 33  VLAPYVVPLLWAAILAFATYPLLAFL-RRFVTRPLLSALLMTVLFLGLVIAPLLSFALPL 91

Query: 86  MLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             E+   V+K+    ++    +P W+  +P     +E W ++         +    L+++
Sbjct: 92  TQEILTEVAKIRGFLENPQATLPPWVDHLPVIGPRAEGWYQNFRSHTPSLSIFLDKLQSH 151

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + +                +  + +++ LF FY  G ++   + +L         ++  
Sbjct: 152 LLTW-GDRLFSIMTDAGKIAVKTLILLLGLFAFYLRGPALWAGIRTLLLRFGGPATERPF 210

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  V R    GM   A+ +  + G  + +A VP  + L  +   +A+ P GA   +  
Sbjct: 211 NQIAPVTRGVVYGMFFTALSQAALAGIGFGVARVPEALLLTFLLFFLALFPMGAVAVWLP 270

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            S  LL +G         +W AI +  ++  ++P  +G   ++PF+    G++GG+   G
Sbjct: 271 ASFTLLAQGRTLAFLLFLVWNAIVVGGIENVIKPLFIGRSSEMPFILILLGVLGGLEAFG 330

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
           ++GLFIGPV++ ++  +W+++I 
Sbjct: 331 IIGLFIGPVILVILQTLWQDAIE 353


>gi|332188283|ref|ZP_08390010.1| hypothetical protein SUS17_3412 [Sphingomonas sp. S17]
 gi|332011679|gb|EGI53757.1| hypothetical protein SUS17_3412 [Sphingomonas sp. S17]
          Length = 359

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/355 (18%), Positives = 132/355 (37%), Gaps = 3/355 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +G     +  I +     +  F   +L A +       ++   +++        A +
Sbjct: 7   RIERGGFILFLALITIALTAVISSFLIALLWAALAAILFRSLFQWLLAQTGGRRNLAAGL 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +    +VP L +    + +   +  K+           + + D         +   
Sbjct: 67  TMLIITFAVVVPTLLIGSMVVDQASGVYLKMRSGQIDFAQYFQQIRDALPTRLRQAMDNS 126

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +   + L+      L ++    I   A   G     + L+    +   FF  RDG  + 
Sbjct: 127 GVGSLEGLQSRISRTLSSSVSQ-IATQALSIGRNAFAFALTFGVGLYIAFFLIRDGERLG 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                           ++      V+R+T  G  I+ + +G +    +W+ G+P+ +  G
Sbjct: 186 PAFVRALPLEQG-VAARLVETFVAVVRATIKGSVIVGLVQGALGAITFWIVGLPAALLWG 244

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+ AI A++P   P I +  V++YLL  G I+    + + G + + + D  LRP LVG  
Sbjct: 245 VLMAIAALLPAIGPAIIWGPVAVYLLATGAIWQGAVVIVSGVLVIGLADNILRPILVGRD 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             LP        +GG+  +GL G+ +GPV+ AL    W+           +  + 
Sbjct: 305 TGLPDWIVLLTTLGGIEVLGLSGIVVGPVVAALFLAGWRILSEERGVALPEAETE 359


>gi|283781384|ref|YP_003372139.1| hypothetical protein Psta_3618 [Pirellula staleyi DSM 6068]
 gi|283439837|gb|ADB18279.1| protein of unknown function UPF0118 [Pirellula staleyi DSM 6068]
          Length = 542

 Score =  118 bits (296), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 99/245 (40%), Gaps = 3/245 (1%)

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
            R       G       T+  +                    +    S    I       
Sbjct: 204 FRVFKRDFLGGPYRAWLTELANPTDEQIEDLRQSTLLTASSPLVSLGSDTVAIVGKLAFG 263

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           ++ M+ ALFF + +G  +      L       Y +++     +V R+      + A+ +G
Sbjct: 264 VVIMVAALFFLFAEGGKMLNAAIRLSPLEER-YVRELVGEFDRVCRAVVAATLLSAVAQG 322

Query: 227 LVLGSAYWLAGVPSHV-ALGVITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCLFLW 284
           ++ G  ++ AGV   V  L V+T ++A++P  GA   +   SIYL   G+   A  L ++
Sbjct: 323 ILAGIGFYFAGVQHAVALLMVLTCVLAIVPFTGAAAVWIPTSIYLYYDGHTTAAILLAIY 382

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           GA  +   D  ++P ++ G   L  L     ++GG++ +G +G+ +GP+++  +  + K 
Sbjct: 383 GAAIVSTADNIIKPLVLHGQSNLHPLLALLSVIGGIQALGPIGILVGPMVVVFLQTLLKL 442

Query: 345 SIMAI 349
               +
Sbjct: 443 LQREL 447


>gi|329896026|ref|ZP_08271262.1| Putative permease PerM (YfgO) [gamma proteobacterium IMCC3088]
 gi|328921986|gb|EGG29350.1| Putative permease PerM (YfgO) [gamma proteobacterium IMCC3088]
          Length = 363

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/346 (15%), Positives = 112/346 (32%), Gaps = 12/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   + ++  +++ + L  +  L    AP+++ALI+ +    + +   S         
Sbjct: 11  RYLFEEESVLLLVLISVTLFLMMVLGAVMAPIVAALILAYLVQGVSTRMQS-VGLPKWMG 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            + A    + +F   +L LF     ++  L S+     +        L D      + + 
Sbjct: 70  FIAAYGLFLAVFFGSILGLFPLVWRQLATLASEFPRMVKEVQAALSVLPDRYPQFISEQQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  Q     +   L    ++ IP              + +I + + +FFF +D  
Sbjct: 130 IVDLIASVQRELAPAGQKLLELSLNSIPGL--------FGVMIYLILIPLLVFFFLKDKD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I+  L            ++I   +   I +   G  I  +  G V   A+   G+    
Sbjct: 182 VITGWLSGQLPKE-RPLLRRIWAEMDLQIANYARGKAIEVLIVGSVSYIAFLTLGLNYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LG++  +  +IP       T   + +     G       +     +   +    L P L
Sbjct: 241 LLGLLVGLSVIIPYVGATLVTIPVVLVAFFQWGIGNEFYTVLAVYLVIQILDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  +     ++      GL G F    L  LI  I     
Sbjct: 301 FSEAVNLHPVAIILAVLFFGGVWGLWGAFFAIPLATLIKAIMNAWP 346


>gi|283796073|ref|ZP_06345226.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
 gi|291076286|gb|EFE13650.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
          Length = 376

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 113/353 (32%), Gaps = 3/353 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +   +I+    + + +     AP  +  +I +           +        AV+  +
Sbjct: 12  NFLYFTIILLAAFILIKYGLPMVAPFAAGFVIAYLLRTPVCFLSKRLRMKKKAAAVLTVL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
              C   + +  +       +K  +  +       +                 +    L+
Sbjct: 72  VFYCTVGLLIFLMSVKAFSAVKGFLFNLPALYAAHVEPILSDIYSGIEQSFLHMDPALLT 131

Query: 129 HPQSLKILSETFLK---TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + L       L    ++       + S          +S++ +II+ FF   D   ++
Sbjct: 132 ALEELMTQFSQSLGQMVSSLSRLAMGYVSGVASSLPGIFISLLLLIISTFFISADYDRLT 191

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                  +      +  I   V   +        +I     L L     + GV + + + 
Sbjct: 192 GFCLLQLDEKRREIFLLIKEYVVGTLFVCIRSYALIMSITFLELSIGLTVVGVENSIFIA 251

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + AI  ++P           I L      F+     L   + + +V   + P +VG  I
Sbjct: 252 FLIAIFDILPVLGTGGVMIPWIVLEALKMNFSMALALLLVYLFVTVVRNIIEPKIVGAQI 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L  + T   +  G +  G+LGLF  P+ ++L+  + +  ++ +   +E  +S
Sbjct: 312 GLHPVVTLSSMFVGAQLFGVLGLFGFPICLSLLRYLNENGVIRLFRMEENTNS 364


>gi|153832787|ref|ZP_01985454.1| hipothetical membrane protein [Vibrio harveyi HY01]
 gi|148870921|gb|EDL69811.1| hipothetical membrane protein [Vibrio harveyi HY01]
          Length = 373

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 120/346 (34%), Gaps = 5/346 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I    +  +I      L  F   V+   II    +P+  +  ++   S    + + +  
Sbjct: 15  AIKIGAVALLIWWCFSILSPFIMLVVWGGIIAIALYPVMMTLHNRLGISKGKASALLSTI 74

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L +VPL+ L         E+V+ +             L +IP       +   + S 
Sbjct: 75  GVLLLLVPLIALSSGLYTSGTEVVTGLQDGTLVVPKPQESLKEIPVVGDKLFVAINYAST 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                ++         +             F+ + +S +        F  +     +   
Sbjct: 135 NMEGFLVKYGEQVKGFLSQAASIVGSVSGGFIQFIISTMIAGA----FMSNAEVCQKGFT 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L + L     + +  +    +RS   G+  +A+ + ++ G      GVP+     V   
Sbjct: 191 KLADRLTNKKGEALIDLSKSTVRSVVQGVIGVALIQSVMAGVGMVAVGVPAAALWMVAVI 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++A++     ++     IY+    +   A    +W  +     D  L+P L+      P 
Sbjct: 251 LIAIVQLPPILALIPAIIYVFSVESTLVAGIFLVWCILV-SASDAVLKPVLLSRGSDTPM 309

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L T  G +GG+   G++GLF+G V+++L   +    +        K
Sbjct: 310 LVTLLGALGGMAMSGIVGLFVGAVVLSLTYQLMVNWLDEDDAEANK 355


>gi|300814732|ref|ZP_07094980.1| putative membrane protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300511119|gb|EFK38371.1| putative membrane protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 415

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 117/349 (33%), Gaps = 17/349 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMC 72
               L     P +   ++ F    + + F  K           +       +++   +  
Sbjct: 59  IFITLLSIMFPFILGGVLAFMIKIVLNFFEEKLFNKIKSARFQKHKRKISILVSIFVIFL 118

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV---PRWLSDIPGGMWASELWTKHLSH 129
           +  + L  +    +  + +L + +    Q  I       ++++    M            
Sbjct: 119 IIFIILRIVVPQFISSISKLQTALPPLIQKAIDKSRNIAFINEYSDKMQKIYDHLSVSKI 178

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              ++   +     + I    + A       L   ++ +  +I   +   D   +  Q  
Sbjct: 179 FDQIREFVKNQGDNSSISTAFQRAYSTATNILGGIVNFVLALITAIYILSDKEHLEYQSK 238

Query: 190 SLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +   +F          + +++ +       G  I +   G+++    +LA +P+   LG
Sbjct: 239 RIVYSIFSKKTSGKIFHVFKLLHQNFEGFIRGQIIDSTVLGIIVFIFSFLAKMPNATTLG 298

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+  +  ++P   P     +   L++  +   A    ++  I   +    + P LVGG +
Sbjct: 299 VLAGVTNLVPIIGPFIGGFMGFVLIVIDDFSKAIIFVIFIFIMQQVESNLIYPKLVGGAV 358

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            LP L T   +  G    G++G+++   L + I  +  E      + K+
Sbjct: 359 GLPALWTLIAITVGGSLFGVVGMWVFIPLTSTIYTLIGEYTKYKIDKKD 407


>gi|164688257|ref|ZP_02212285.1| hypothetical protein CLOBAR_01902 [Clostridium bartlettii DSM
           16795]
 gi|164602670|gb|EDQ96135.1| hypothetical protein CLOBAR_01902 [Clostridium bartlettii DSM
           16795]
          Length = 391

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 119/360 (33%), Gaps = 12/360 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFA----------PVLSALIIGFTSWPIYSSFISKK- 55
             +     + +  ++  LY +   F           P L    I F      +    K  
Sbjct: 25  IRKIFEGIIFLIFLVFILYRIGDIFGIFTNILSIVEPFLVGATIAFILSIPMNFLERKFP 84

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIP 114
                   ++  +  + + +V +  +    +  +  +V+ V  + +    + +  + +  
Sbjct: 85  RLKRPLSLLLTFLIFILVILVLVFLIGPKLIDTITNIVNTVPESVESLRKLLQDTNINWD 144

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                            +  +       ++         +      +   +S IF    L
Sbjct: 145 WVQDYLASIEIDWQSISNKVLSFFKDSFSSLFTSTFGVVTGVVSTIISTIISFIFAAYIL 204

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               +    + + L +           ++ ++  K   + F    I  +  G +      
Sbjct: 205 ISKEKLSVQLKKLLYAFLPEKIVDKMVEVGKLTHKTFTNFFTYQCIECLILGSMFFVTMV 264

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  +P  + + V+  IMA+IP         ++  L++  N        +  A+   I   
Sbjct: 265 ILKIPYALLISVMITIMALIPIFGLCIAFIIASILIVMVNPIKVIVFAILFAVLQQIEGN 324

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            + P +VG  I LP +   F +  G + MG++G+ +   L ++I  + ++S+    +N++
Sbjct: 325 LIYPRVVGKSIGLPPIWVIFVITLGSKLMGIVGMILFIPLSSVIYTLLRKSVYKRIQNRK 384


>gi|154497012|ref|ZP_02035708.1| hypothetical protein BACCAP_01305 [Bacteroides capillosus ATCC
           29799]
 gi|150273411|gb|EDN00539.1| hypothetical protein BACCAP_01305 [Bacteroides capillosus ATCC
           29799]
          Length = 424

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 110/343 (32%), Gaps = 3/343 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +++  ++     L G   P + AL++ +   P       +   S   L+++  +
Sbjct: 46  RLAGTILVLLFLVYGAPPLLGLLMPFVLALVLTWILNPAIVKVQRRFGGSRKALSLVMLI 105

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +    L  L Y  + E+  LV          +       +         L  +   
Sbjct: 106 LIFTIAGGILAALVYSIVSEVASLVMNWPSIWADSLQPAIVGLEEFLSGLFIGLPDQVSQ 165

Query: 129 HPQSLKILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +       +L       +      A  F      + ++++  ++A +F   D   + 
Sbjct: 166 GATAALDKLVAWLNEMIPSLLSHAGSAAGSFAFSIPSFAVALVIFVMATYFIASDYPRLR 225

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +          ++  + R              I+++    +L   + +   P  V L 
Sbjct: 226 LMVTDRLSPSVRDFFGSVKRTAVAAFGGYVKAQLILSVVIFFILLVGFVVIRQPYSVLLA 285

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + A++  IP     +         +    +      +     + +  +   P +VG   
Sbjct: 286 FLLAVLDFIPIVGSGTVMVPWAVADLFLGEYRHAVELMVIWGIIALFRRGAEPKVVGDQT 345

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L  + +   +  G++  G+ G+ +GPVL  ++  I +  ++ 
Sbjct: 346 GLSPILSLISIYVGMKIAGVAGMILGPVLCMVVINIGRLGVLD 388


>gi|126663637|ref|ZP_01734633.1| Hypothetical membrane spanning protein [Flavobacteria bacterium
           BAL38]
 gi|126624220|gb|EAZ94912.1| Hypothetical membrane spanning protein [Flavobacteria bacterium
           BAL38]
          Length = 364

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 120/353 (33%), Gaps = 20/353 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   ++  + L  LY +       L A++I     P+ +    K +  +T   + A V
Sbjct: 12  KAVAILLVSCLALFFLYKITTVIIYCLVAIVISLLLNPLVNFLKRKFKFKNTLAVITAIV 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +    +L      + + + L           + V     +    +    ++    +
Sbjct: 72  VAFIIISGFILLFVPLILAQSENL---------SLLDVSSLERNYHLLLENITIFLDSYN 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I S         +FIP F + F     ++ +    ++   FF  ++  S   + 
Sbjct: 123 INTKQLIESSKLSSFTTFEFIPNFLNSFLNTIGNFSVGFASVLFITFFILKENHSFYSKF 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L               + +++ S FLG+ +      ++    +++ GV + + + ++ 
Sbjct: 183 KKLLPENQKEKILNSIHDINRLLSSYFLGLLLQLTIIMILYIIIFFIFGVENAIIIALLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIF-----------NATCLFLWGAIELFIVDKTLR 297
           AI  ++P   P+  + V+  L++   I             A  + +  ++   I +    
Sbjct: 243 AIFNIVPYVGPLIASIVASLLIMTSGIGTGADFASETLPTAIYVLIGMSLVQVIDNNFTS 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           P +         L  F  ++      G++G+ I       + VI KE     K
Sbjct: 303 PLIFSKSTNSHPLEIFLVILITGILFGIVGMIIAVPFYTSLKVIGKEFFPDNK 355


>gi|255525857|ref|ZP_05392785.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296185100|ref|ZP_06853510.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|255510421|gb|EET86733.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296049934|gb|EFG89358.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 388

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/347 (16%), Positives = 117/347 (33%), Gaps = 15/347 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLA-VIATVSV 70
           I+ ++   L  + G   P   AL+I +   P      +    KK          I  + V
Sbjct: 34  ILSLLNNILNKIIGVLKPFFIALVIVYLLKPGVKSVENFLEKKKILKKPSSRRAIGILVV 93

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL-------- 122
             L     + +     + +   VS  V  +  G+ +  +L +    + +           
Sbjct: 94  YALVTGIFVAVISGIYIMVGGKVSSNVTISNMGMFLTDYLKNSTLSVTSINEKLASLNIS 153

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +L+   +  + S     +  I  I       G     + ++++  I  +  F     
Sbjct: 154 IPGNLNDKIAEIVSSIQSYFSASIGSITNSVVSIGGNIASFFIAVVLSIYLIQDFEYFMD 213

Query: 183 SISQQLDSLGEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  D +          K+I  IV         G  + A   G++     +   +   
Sbjct: 214 LWNKIFDLIFGKSKVGNKLKEILNIVDDTFYRYIRGQLLEAGIVGVLSAIVLYFIKIDYA 273

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + +G+I  I  MIP   P+  T +++   L+ G    A    +   +   + +  L P +
Sbjct: 274 LMIGIIAGICNMIPYIGPVVGTVLAVIMALLSGEPITALWAIIGMLVVQQVDNNLLAPKI 333

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           VG  + L  + T   ++ G    GL+G+ I     A +  +  +   
Sbjct: 334 VGDSVGLHPVFTMVAILVGGNVGGLIGMLIAVPAAASLKRLISKWYA 380


>gi|302558676|ref|ZP_07311018.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
 gi|302476294|gb|EFL39387.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
          Length = 447

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 93/321 (28%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  L  +           +++L+I     P  +    +          +  
Sbjct: 113 WRLLVLAGTVWVLMRIISAVQLVVLAFVASLLITALLQPTVARL-RRYGVPRGPATALTA 171

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +   F+ +  M  +  L  ++                     W         
Sbjct: 172 LFGFVVIGLIGWFVTWQVMENIDHLAGQIQDGIDELRN------------WLLNSPFHVT 219

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +    +         + I         + ++    I+  + +  F   DG  I + 
Sbjct: 220 DKQINEIAKNLREAVGANTEQITSAGLEGVTVVVEALTGILLAVFSTLFLLYDGKRIWEW 279

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L                 + + +   G  I+A+ + + +G   +   VP  V L V 
Sbjct: 280 SLKLVPAAARPGVAGAGPAAWRTLTAYVRGTVIVALIDAIFIGLGIYFLDVPMAVPLAVF 339

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + + IP    +       +  L+   +F    + +       I    L+PF++G  ++
Sbjct: 340 IFLFSFIPLVGAVVSGALAVVVGLVTQGVFTGVMVLVVVLAVQQIEGHILQPFILGRAVR 399

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           +  L     +  G    G+ G
Sbjct: 400 VHPLAVVLAVASGGMVAGIGG 420


>gi|262382754|ref|ZP_06075891.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295632|gb|EEY83563.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 385

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 116/354 (32%), Gaps = 11/354 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIAT 67
           + +   +++  I+  +  L+    P L A ++ +   P    F  K   +S     +   
Sbjct: 16  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 75

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V++  L  + ++ +      E  + +  +   +     VP         + ++  + + +
Sbjct: 76  VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVPLIPHSWMEYLESNVNFAQIM 135

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L         +  I                 +  +++   F   D   I+  
Sbjct: 136 ELLSKENLLKAVKQIAPQLWSILSNTFSILFS----ITIVFVILLYFIFILLDYEKIANG 191

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  V LG+ 
Sbjct: 192 WIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLAVTLGLF 251

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ +IP    I    + +  L       +          L   I   I D  L P ++
Sbjct: 252 IGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLYLTPRIM 311

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G  + L        L      +G +GL I   L  L    +K  I+      + 
Sbjct: 312 GKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEDNELDP 365


>gi|325983330|ref|YP_004295732.1| hypothetical protein NAL212_2783 [Nitrosomonas sp. AL212]
 gi|325532849|gb|ADZ27570.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 362

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/354 (19%), Positives = 135/354 (38%), Gaps = 6/354 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     +I  +++     L  F   ++ A+++  ++WPIY         ++T  +++  V
Sbjct: 9   QFARLVVIAILLIGCYQILHPFIPAIVFAMVVCISTWPIYLQLRRALGGNTTLASLLMIV 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHL 127
            ++ L I+P   L +     +  ++  V +  Q G I  P WL D P        + + L
Sbjct: 69  GMILLVIIPSALLAFSLADNVTAIIDAVKVFMQQGSIEPPSWLKDTPFFGEQFIRYWQGL 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   +  T L     +F+    +  G   L    +                 +   
Sbjct: 129 MSGGKEVGMLLTGLLEPIKNFLLNLGNVIGKSLLQMVFAAFIGFFFYRDGETLIQMLHNG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALG 245
           +  L +             +   +     G+   A+ + +     + +AGV       LG
Sbjct: 189 VAKLLDGSLG---TDPLVQIHNTVTGVVYGIFGSALAQAIAAMIGFLIAGVSGSGAFLLG 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             T  +++IP G  + +  VS++ L +G+   A    LWG   +  +D  +RP+L+    
Sbjct: 246 SATFFLSVIPMGPSLVWGGVSVWFLYEGSYGWAIFTILWGIFVISSIDNFVRPYLISRGS 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L FL    G  GG+   G +G+FIGP ++A+   + +        + +   +N
Sbjct: 306 NLSFLLVVLGASGGIIAYGFIGIFIGPPILAIGITLVRLWTSQPVPSIKIAQAN 359


>gi|94967586|ref|YP_589634.1| hypothetical protein Acid345_0555 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549636|gb|ABF39560.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 380

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 107/345 (31%), Gaps = 12/345 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+        +  + +   L   Y  K     +  ++++ F   P+      +     +
Sbjct: 34  LRKMQKTQTTCLFILALATGLGLAYVAKMVLVVLFVSILVAFVLAPVVDF-GVRFGVPRS 92

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++ A   ++ +        +  G+  M++L        + G    R           +
Sbjct: 93  LASLFAVFLLIGVIYGITFMSYSKGVDFMQDLPKYSRRIREVGQRWERR----------A 142

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E + +            +  +       +    +       +   +I F+    FF    
Sbjct: 143 EAFRRSTQDIVPQSEDDKRAVTIRQQSSLSDTVTTALGSVGEIFFTISFIPFLAFFMLSW 202

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +      L +            ++  +IRS  +G  ++ +   +V    + L GVP 
Sbjct: 203 QEHVRSATVMLFKMENRNTAYVTLGLMSSMIRSFLVGNLLVGLFVSVVSMIIFGLLGVPF 262

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI-ELFIVDKTLRPF 299
              +G I+  ++M+P    +      +   +         + +   +         L P 
Sbjct: 263 FYFVGFISGYLSMVPYLGIVLALIPPVITGMGVMSLEKLVVIIVSILSLHLFAMNVLYPK 322

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++G  ++L  L     L+      G +GL +   + A I ++   
Sbjct: 323 VLGKRLQLNPLTVTIALLFWGWLWGAMGLILAIPVTAAIKIVLDH 367


>gi|118579221|ref|YP_900471.1| hypothetical protein Ppro_0783 [Pelobacter propionicus DSM 2379]
 gi|118501931|gb|ABK98413.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 353

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/341 (21%), Positives = 137/341 (40%), Gaps = 3/341 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
             + +  +    L  F   ++ A  IG  S+P+Y   +++        AV  T  V+   
Sbjct: 14  FTLLMCYLLFTILAPFLTTMVWAGTIGAISYPLYDKLLARFRCRENLAAVAMTTLVVLAL 73

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           I+PL+ L +    E       +              +   P      +            
Sbjct: 74  IIPLVGLIFTLARETALAYQYIEGVTSGQSGSFMESILRHPQVSPLLDRIRPLTGSFNLE 133

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                      G+  +  +++     FL + + ++ M+I LFF YRDG    ++   +  
Sbjct: 134 LDSMLLPALKRGLASLLNYSTGIVKNFLGFLIKLMLMLITLFFIYRDGRHFLRRFWPVVG 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I+  + +V+ +   G  +  + +G + G  +W+AG+PS    G++  + A 
Sbjct: 194 ID-EKMRATIATTITRVLDAVLYGFLLTCLVQGTLGGLGFWVAGLPSPFLFGILMTVCAP 252

Query: 254 IPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP     + +   +IYLL +G I     L +W A+ +  +D  +RP  + G  KLP    
Sbjct: 253 IPLIGTAMIWMPGAIYLLTQGRILAGVLLMVWSAVAVSGIDNIIRPLFISGRAKLPIPVV 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            FG++GG+   GL G+  GPV++AL  V ++         +
Sbjct: 313 IFGVLGGLLAFGLTGVVAGPVIVALFLVFFESYGEKEMAEE 353


>gi|298388101|ref|ZP_06997646.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|298259131|gb|EFI02010.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 377

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 115/344 (33%), Gaps = 12/344 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++  IL+ +  L G   P   A +I +  +P+   F  K    S  +++   + ++ L 
Sbjct: 19  VLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIVSIFCALFLITLV 78

Query: 75  IV-PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + E+  +   +V    +G       +         +L   +    +  
Sbjct: 79  GISLFYLLVPPMVSEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRILSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D   I++    L  
Sbjct: 139 ILAAIKDTVPRVWALLAESLNILFSILASFIILLYVI-----FILLDYEVIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTVLLAILKAADTGENFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      MG+LG+ I   L  L+   ++  I+  + 
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKER 357


>gi|223936487|ref|ZP_03628399.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223895005|gb|EEF61454.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 374

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 99/335 (29%), Gaps = 17/335 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   IIL+ ++F       + + +++      + +              ++    ++ L
Sbjct: 30  VLGTAIILLLIWFGADILLLLFTGILLAIFLRTLSNWIQEHTRLGKIPSLILVITLLILL 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                  +      +  EL +++  A                               Q L
Sbjct: 90  LGGAGWLMAGPISEQFNELSNQIPTAIDKIRHHLAQYPW-----------------GQKL 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                +         I   A     +          +I    +   +          L  
Sbjct: 133 IEPITSDDILPRARTILGQAKGIFSVTFTAITGFFLIIFIGLYLAMNARLHINGFIKLFP 192

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  +++   V  +++   +G  +     GLV G      GVP    LG +T  +  
Sbjct: 193 VNKRPRAREVLGDVGSLLQRWIIGQLVSMTIIGLVTGIGLHFVGVPLAGILGFLTGFLDF 252

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P     +S+ L    +   A  + L      F+    L P +     +LP + T 
Sbjct: 253 IPLVGPFIAGTISVLLAFLMSPTKALYVLLLFVALQFLESHLLIPIVQKKAAELPPVLTL 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             +V      G +G+ +   ++A+I V+ K+  + 
Sbjct: 313 IAMVLFGSLFGFMGVLLATPMLAVIMVLIKKLYIE 347


>gi|255033951|ref|YP_003084572.1| hypothetical protein Dfer_0136 [Dyadobacter fermentans DSM 18053]
 gi|254946707|gb|ACT91407.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 387

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 118/333 (35%), Gaps = 20/333 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  + +++    L  L+    P   A +I     PIY+ F   K      +A++ T+ + 
Sbjct: 34  MVLIGLYLFFHILDSLQEIIVPFAFAGLIAILLNPIYNRFQRWKFNK--IVAIVLTIFIA 91

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +  ++F     +++  ++V ++       +   +       G+   +  +       
Sbjct: 92  ILVVGGIMFFLSSQIVQFGDMVPQLEKKTMKLLDNLQEWLSTTFGISTEKQMSMLDEAIN 151

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           + +                 +  +            + + + +F        I   +  +
Sbjct: 152 NSR----------------TYVGKTVNTLFGIISFFVLIPLYIFLLLFYKPLILNFIFEV 195

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +        +I +     ++S  +G+ I       +   A  + GVP  + LGVI AI+
Sbjct: 196 FDENNSDQVAEILQETKGAVQSYIVGLMIETTIIAALNSVALLILGVPYALLLGVIGAIL 255

Query: 252 AMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +IP    I      V I  + K        +     +  F+ +  + P +V   + +  
Sbjct: 256 NLIPYIGGIIAIALPVLISFITKDGYTTPLLIIGAYTVIQFLDNNIIVPRVVSSKVSVNA 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L +   ++ G    G+ G+F+    +A++ +I+
Sbjct: 316 LISILVVLLGGTLWGVSGMFLSIPFVAVLKIIF 348


>gi|294795119|ref|ZP_06760254.1| putative membrane protein [Veillonella sp. 3_1_44]
 gi|294454481|gb|EFG22855.1| putative membrane protein [Veillonella sp. 3_1_44]
          Length = 373

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 118/374 (31%), Gaps = 23/374 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSS 50
           M+E     Q I   ++  I+++    +             F P++    I F    +   
Sbjct: 1   MKEFKYYKQLIGAIILAGIMIMMALRISDIASGLDAIFTAFVPLIVGACIAFVLDILVVR 60

Query: 51  FISKKEE----------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
           +                      +++ V++  +            +  M  +V+      
Sbjct: 61  YERWLWPKCDSGWKYKIRRPLSLLLSFVTISVIVYFIARMALPQLIHSMSIIVAASPQLY 120

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                   W+  I   +  +   T   +              T G  +I           
Sbjct: 121 TDFQT---WMQHITETIPMASNQTIIDALSGENIAKYTREWGTKGGTYIVNAMGTVLSWT 177

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           L+  L +IF +  L    R      + L +     +      ++R+  +   + F+G  I
Sbjct: 178 LNIGLGLIFAVYMLLDKERLMLQGKRILKAYASDEWVNRVSYVTRVAVQTFSNFFVGQFI 237

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            A+  G+++G   WL  +     +  +  +  +IP         +   +L+     +A  
Sbjct: 238 DALVLGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYVGGIIGAVMLLTVGPMDALI 297

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +   +   I    + P +VG  + LP L  F  ++ G   MG+ G+ IG  L+A    
Sbjct: 298 YVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGSLMGVTGMLIGVPLVATCYK 357

Query: 341 IWKESIMAIKENKE 354
           +    +     + E
Sbjct: 358 LIMTDVDGRLASNE 371


>gi|167745366|ref|ZP_02417493.1| hypothetical protein ANACAC_00057 [Anaerostipes caccae DSM 14662]
 gi|167655087|gb|EDR99216.1| hypothetical protein ANACAC_00057 [Anaerostipes caccae DSM 14662]
          Length = 392

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 113/356 (31%), Gaps = 6/356 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKE 56
           MR   +  +  M  +++      L F+      F  P ++A I+   + P+ +    K  
Sbjct: 1   MRRWEIYLEIFMELIVIAGGAFLLIFVLPKCIGFLWPFVAAWIVAMLAHPVIAFLEDKIS 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IP 114
               F + +  ++V+   I  + F+      ++    + +    +        L +  + 
Sbjct: 61  LPKRFGSALIIIAVIAGLIALISFIVSQLAAQIVGFAANLPDLRETVQTQLMNLKEQAVH 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                                       +   ++    +           +  + M  A 
Sbjct: 121 LLDSLPYGMGVKFDTMLGSTDKVLDKAVSAIGNYGMEHSGNVAKGMTSGFIGTVVMFFAS 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           + F  D   I Q  +     +              V+ S       I +    +L   + 
Sbjct: 181 YLFIVDKDKIVQGYEKHVPKMVRHKIGIFYHNTLGVLASYCWAQVKIMVIIVAILWIGFI 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           LAG+     L V+ AI+ ++P     +         I         + L   +   +  +
Sbjct: 241 LAGISYAFFLAVVIAILDVLPILGTGTAIIPWALYKILTGDIKTAIILLIIYVICLVTKQ 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+P ++G  + +  L T F +  G++  G+ G+ +  +L   +  ++K  I   K
Sbjct: 301 VLQPKMMGDSMGISPLATLFLIYIGLKLSGIGGMLLALILGIFVYNLYKLGIFDRK 356


>gi|53804374|ref|YP_113737.1| hypothetical protein MCA1275 [Methylococcus capsulatus str. Bath]
 gi|53758135|gb|AAU92426.1| putative membrane protein [Methylococcus capsulatus str. Bath]
          Length = 354

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 100/330 (30%), Positives = 161/330 (48%), Gaps = 5/330 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLF 80
             + L GF  P+  A+++ FT WP Y     +        +L +  T+ +M L +VP  F
Sbjct: 24  GFWVLHGFIMPIAWAVVLAFTVWPWYEHVYQRAPCWMRGGWLPLAMTLLMMVLLMVPATF 83

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                  E++ L   ++     GI  P WL  +P   W      +  S         +  
Sbjct: 84  GVLVLGHEVQMLHRLLIKVQSSGIGAPDWLIQLP---WVGGWIKETWSETFGNPETIKNA 140

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L   G+  +  +        L   +S    ++ALFF +RDG  + +Q+      LF +  
Sbjct: 141 LNALGMGTVFSYTRDLAAQVLHRFMSGFVTLLALFFIFRDGHGLGRQILDRSVRLFGSAG 200

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            + +R     +R T  GM ++ IG+G+VLG  YW  G+   V LG +TA++A++P  A +
Sbjct: 201 ARYARHAVTAVRGTVNGMLLVGIGKGVVLGLGYWAVGLSQPVLLGTLTAVVALVPFAAKL 260

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            F A SIYL+++G+      L ++G I   I D  +RP L+GG   +PFLPT  G+ GGV
Sbjct: 261 VFGAASIYLIVQGHAMAGIVLVVYGFIITLIADNYVRPTLIGGAANIPFLPTLLGIFGGV 320

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             MG +GLFIGP +MA++  +W++     +
Sbjct: 321 EAMGFVGLFIGPTVMAILISLWRDWNDETR 350


>gi|94264995|ref|ZP_01288765.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|94267189|ref|ZP_01290805.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93452098|gb|EAT02778.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93454542|gb|EAT04823.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
          Length = 381

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 127/328 (38%), Gaps = 5/328 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  F + ++ + ++     PIY+    K        + +    V+ L  +PL+F     
Sbjct: 28  LLWPFLSILVLSFLLTSVFRPIYNLLNRKL--PELVASFLTCTLVVLLVFIPLVFFVAAL 85

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSHPQSLKILSETFLKTN 144
             E + L     +A        R   +    +   E       S        +   L   
Sbjct: 86  AQEAQGLYEWGRVAGAGLGEKLRTFQESLLFVRLQETAAALGFSLEPEQLGRTLADLART 145

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
              ++   AS +    + +  S   M I +FF   +   +   +  L   L     +++ 
Sbjct: 146 AGLYLYNQASGWAANVVMFVFSFFLMFITIFFLLIEQDRLLNYILRLSP-LPDQQERRLF 204

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
               ++  +  +G  I A+ +G+V G  + L G+   V  G I A++A +P     +   
Sbjct: 205 AKFDEITSAVLIGNGICAVIQGVVGGIIFALLGLGPPVLWGAIMAVLAFLPIFGIGLVMV 264

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++Y+  KG++     L +   +    ++  L+P LVG  +++  L  F  ++GG+ + 
Sbjct: 265 PAALYMFFKGSLAGGIALLVLYGVLAVSIEYALKPKLVGQRVRMHTLLVFLSIIGGLSSF 324

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G LG+  GP+++     + +  +++   
Sbjct: 325 GFLGIIYGPLIITAFLTLAEIYLVSYDR 352


>gi|126667512|ref|ZP_01738483.1| predicted permease [Marinobacter sp. ELB17]
 gi|126628104|gb|EAZ98730.1| predicted permease [Marinobacter sp. ELB17]
          Length = 357

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 109/348 (31%), Gaps = 12/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + + ++  +I+ +  + + +     AP +++LI+ F    + +  ++  +      
Sbjct: 11  KYFSDEEAVILGLILIVGTMFVIWFGAMLAPAIASLIVAFILQGLVTKMLAW-KVPEPLA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  +  + +    +  L      ++  L  +              L +    + + + 
Sbjct: 70  ILIVFLLFLGILAGAIFGLMPLVWTQLSNLARETPRIIGELQSYLELLPERYPQLVSLDA 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    +    +  +L T  +  IP              +  + + I +FFF +D  
Sbjct: 130 VATVYQQVSTEVGQATQWLVTASLSSIPDL--------FALLIYAVLVPILVFFFLKDRD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +  +      A  +KI   V     +   G  +  +  G      + + G+P   
Sbjct: 182 VLLGSIARMLPPQ-RATMRKIWHEVNLQCANYVRGKALEILIVGTTTYITFKILGMPYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  +IP       T       L   G       + +   +   +    L P L
Sbjct: 241 LLSLLVGLSVVIPYIGAAVVTVPVAIIGLFAFGWGSQFIWIMVAYGVIQALDGNVLVPVL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                 L  +     ++      GL G+F    L  ++  +     + 
Sbjct: 301 FSEVNNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAVVAAWPVR 348


>gi|300690558|ref|YP_003751553.1| permease transmembrane transport protein (perM) [Ralstonia
           solanacearum PSI07]
 gi|299077618|emb|CBJ50253.1| putative permease transmembrane transport protein (perM) [Ralstonia
           solanacearum PSI07]
          Length = 356

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 107/340 (31%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +    L  L  L     P + A I+ +   P  +     +         + 
Sbjct: 10  TKRTLAWIAVAVAFLALLKLLAPTLTPFVFAFILSYILHPGVAWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  + +  +L +      E+  +  ++                 P            
Sbjct: 69  ILLLTVVAVALMLLILAVLQREIPAIREQLPGMLSKLNAAV-----TPRLAEMGVHVRFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + +          + +     +    G   +     +  + I +F+   D   + +
Sbjct: 124 FPGLRKMLTEQLAASPEDVMSTALNYLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNMLMR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +L+      +    ++++     ++     G  I+ +   +   S   LAG    + +G+
Sbjct: 184 RLEGAVPRRWIDKTRELAAETDGLLSQYLRGQIIVMLVLAVYYSSGLALAGFDVALPIGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I   LL  GN++    + +   +   +    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGIGLTLAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQ 343


>gi|227500192|ref|ZP_03930261.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
 gi|227217714|gb|EEI83018.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
          Length = 402

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 113/348 (32%), Gaps = 12/348 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMC 72
            L  + G   P +   +I +      + F  K           ++ + F   I+ + ++C
Sbjct: 34  LLVQVVGVMEPFIIGGMIAYVVSIPMNFFERKLEEYFPNEKYKKKFAGFSLGISCILIIC 93

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ- 131
             I+ L  L    +  +    ++     +         S           +       + 
Sbjct: 94  ALILFLNILIPRIITVIFSFFNRWPEFIRETYDTLNNHSLTRPYADKFYDYVNSFGWYEV 153

Query: 132 -SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  +   +  KT+   F     +  G         I+F I  L +      + ++ + +
Sbjct: 154 RNAVMNFISGKKTDLFSFTTGILNSVGSSIFTIFTIIVFSIFVLVYKNMLKTNGTRIMYA 213

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +       Y  K+  +     +       I  +    +     ++  +P+   + +   +
Sbjct: 214 ILSEKKADYLNKVFSLSYNTFKDYIFSRLIAVVTLSGLTFLGMFIMKIPNAGIISLFVGV 273

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +IP   PI+   +S  ++   +   A    ++  I   I +  + P + G  I LP +
Sbjct: 274 SDLIPIFGPITGAGLSAVIIFLESPIKALIFVIYDVIIQQIQENIIYPAIAGEKIGLPAV 333

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                +  G    G+ G+ IG  + ++I  ++ E I    + K     
Sbjct: 334 WVLASITIGGSLFGIWGMLIGIPVASVIYTLFHEFIDNKLKEKNISDE 381


>gi|296161795|ref|ZP_06844597.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
 gi|295887959|gb|EFG67775.1| protein of unknown function UPF0118 [Burkholderia sp. Ch1-1]
          Length = 358

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 118/347 (34%), Gaps = 8/347 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +      I   I + L+ L     P L   I+ +   P  +  + ++       A++  
Sbjct: 13  RRAFTWLAIALGIGILLWLLSPVLTPFLLGAILAYILQPGVAWMVRRRV-PRGLAALLMM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L  + +L +      E  +L  +V +   H     +     P         +   
Sbjct: 72  LLFTLLMTLLVLLVLAVVQKEGPQLRQQVPVLFAHVNAWLQ-----PKLALLGLADSLDF 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  + L +            +        G + +    +++ + + LF+   D   +  +
Sbjct: 127 ASIRDLVMGQLEGSAQTVALYAWTSIRTSGNVMITVVGNVVMVPLVLFYLLYDWNRMLAR 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++    +     +++  + +++     G  ++          A  LA     + +G+ 
Sbjct: 187 MQTVVPRRWLDKTLQLAHDMDQMLSQYLRGQLLVMGVLAAYYAIALSLARFEIALPVGIF 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T +   IP     +  A+++       G+ +    + L   +   +    L P LVG  I
Sbjct: 247 TGLAVFIPYIGFATGLALALLAALLQFGDWYGFGAVALIYGVGQILESFFLTPRLVGERI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L  L   F L+   +  G  G+ +   + A+++V  +E   +   +
Sbjct: 307 GLHPLAVIFALLAFGQLFGFFGVLLALPVSAILSVATRELRQSYLAS 353


>gi|228993324|ref|ZP_04153240.1| Sporulation integral membrane protein YtvI [Bacillus pseudomycoides
           DSM 12442]
 gi|228999377|ref|ZP_04158956.1| hypothetical protein bmyco0003_39320 [Bacillus mycoides Rock3-17]
 gi|229006932|ref|ZP_04164562.1| hypothetical protein bmyco0002_38330 [Bacillus mycoides Rock1-4]
 gi|228754332|gb|EEM03747.1| hypothetical protein bmyco0002_38330 [Bacillus mycoides Rock1-4]
 gi|228760322|gb|EEM09289.1| hypothetical protein bmyco0003_39320 [Bacillus mycoides Rock3-17]
 gi|228766392|gb|EEM15035.1| Sporulation integral membrane protein YtvI [Bacillus pseudomycoides
           DSM 12442]
          Length = 363

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/348 (16%), Positives = 124/348 (35%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +   I   +L ++ G   P + AL   +   P+ +    K +       +++ +
Sbjct: 2   RLIFVILATTIGFYALLYVSGLIYPFIIALAFAYLINPVVNFLNQKLQFPRALAVLVSLI 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  + +L    +     L+  V       +   +  +         +L +K   
Sbjct: 62  LVFGAIVGLVTYLVTEAISATTYLLQIVTEKFPAIVQYAQQFALNNIMPLYDDLISKFNH 121

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +S +      ++  G          +  I    + F          ++F+++A FF  
Sbjct: 122 LGESQQYTITQNIQNLGTEATKQMKELLTAIISGLTNFISALPTTLTVLVFILLATFFIS 181

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +++ ++  L  +    Y K I   + K +         +     +++     +  V
Sbjct: 182 FDWHTLAHKVKRLLPNRIHGYGKTIFVDLRKALFGFVKAQLTLVSMTTVIVLIGLLILRV 241

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + +IT I+ ++P     +     I  +        T   L   I + +  + + P
Sbjct: 242 PYAITIAIITGIVDLLPYLGTGAVFVPWIIYVFFTGDTAFTIGLLILYIVVIVQRQIMEP 301

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I L  LPT   L  G +  G LGL IGPV + L+  + K  +
Sbjct: 302 KVLSSNIGLDPLPTLIALFVGFKLYGFLGLIIGPVTLVLLNTLHKAHV 349


>gi|223042949|ref|ZP_03612997.1| putative membrane protein [Staphylococcus capitis SK14]
 gi|222443803|gb|EEE49900.1| putative membrane protein [Staphylococcus capitis SK14]
          Length = 363

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 105/334 (31%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +              +   + ++ +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNILERW-GFPRWASILTIFIGLIAIIAIVVSFIAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+ +     +    +  +          S      L    + +I        +G
Sbjct: 95  ISNINNLIKQTPALQKEAEHIINF----------SLKQMDKLPDDVTHRINKAVRSVGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   +  +   F+     +I +   L +  +D       +    +     +   + +
Sbjct: 145 ATSVLSNSVTYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFIVDLLK 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G++L   Y + G+P    L +   +  +IP   P      
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPWLSFTP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I         + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIEGPTTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A+I  +        +   +K +S+
Sbjct: 325 TLILIAVPLYAVIKTLVSNIFKYRQRIIDKANSD 358


>gi|288957925|ref|YP_003448266.1| hypothetical protein AZL_010840 [Azospirillum sp. B510]
 gi|288910233|dbj|BAI71722.1| hypothetical protein AZL_010840 [Azospirillum sp. B510]
          Length = 370

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/324 (10%), Positives = 99/324 (30%), Gaps = 29/324 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++    +  + V L+ + G    + + +++      +             +   I  V++
Sbjct: 48  VLIVAGVAALGVFLWRVSGTLLLIFTGVLLAILLQRLTGLVQRAAGLGHGWSLAIVLVTL 107

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L    +  +      ++ +L  +V  A                               
Sbjct: 108 ALLVGGGVWLMGTSMAAQLGQLQEQVAKAMDMLPD------------------------- 142

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  +  L+                  +      + ++ A  +         + +  
Sbjct: 143 ----GWRQRILEQGRDWPWMNQLGSVASGLVYVVGDAVVVMFAALYLAASPGVYQRGVVL 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L          ++  +    +    +G  +     G+++ +  WL G+PS +ALG++  +
Sbjct: 199 LVPPAGQTRACEVMAVAGDSLWKWLIGQFVAMAAVGVMIAAGLWLLGIPSALALGMVAGL 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP   P+     ++ +    +  +A  +     +   +    + P L    + LP +
Sbjct: 259 LEFIPLLGPVLAAVPALMIGFAQSPQDALWVAGLYLVIQQVEGNLITPLLQKRVVDLPPV 318

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVL 334
            T   +  G    G++G+F+   +
Sbjct: 319 ITIGAIAAGGVLFGVMGMFLATPI 342


>gi|224476107|ref|YP_002633713.1| hypothetical protein Sca_0614 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222420714|emb|CAL27528.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 361

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/333 (10%), Positives = 105/333 (31%), Gaps = 11/333 (3%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I    +  +K    P + +  + +   P+       +         I  V ++ +    
Sbjct: 28  VIFNPIIIIVKSVLLPFILSGFLFYVFLPLQKLLEKYRV-PRWGSITIIFVILIGIITAA 86

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  +    M ++  L+ +     Q    + ++  D              L +  + ++  
Sbjct: 87  VTVVAPLIMNQINNLIKQAPQLQQETQTMIKYALD----------QMDKLPNDVTDRVNK 136

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                 + +  +   +       +     +I +   L +  +D       +  L      
Sbjct: 137 VVKSFGDNVTNVLTNSISIVSQIISTLFLLIMVPFFLIYMLKDHEKFIPSIAKLFNGDRK 196

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   + + +   ++S   G   ++   G++L   Y + G+   + L +   +  MIP  
Sbjct: 197 VFVVNLLKDLNHTLQSYIQGQVTVSFILGVILYIGYSIIGLDYTLLLVLFAGVANMIPFL 256

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P    A +  + I  +      + +   +   +    + P ++G  + +  L     ++
Sbjct: 257 GPWMSFAPAAIIGIIQSPTAFIWVCVVTLVAQQLEGNVITPNVMGKSLSIHPLTIIVVIL 316

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                 G + + +   L A+I  I +      +
Sbjct: 317 AAGNLGGFVLILVAVPLYAVIKTIVRNVFKYRQ 349


>gi|329571947|gb|EGG53620.1| hypothetical protein HMPREF9520_02429 [Enterococcus faecalis
           TX1467]
          Length = 366

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 11/342 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVITYLLSGSQKKIEGLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 142 FLNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+       +  V   V LG++  I  MIP  
Sbjct: 202 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYF 261

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 262 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 322 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|315445776|ref|YP_004078655.1| permease [Mycobacterium sp. Spyr1]
 gi|315264079|gb|ADU00821.1| predicted permease [Mycobacterium sp. Spyr1]
          Length = 389

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 96/312 (30%), Gaps = 14/312 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +        PV+ ALI     WP      +K         ++  +  + +    + 
Sbjct: 39  LAWVVGKAWVIVLPVVLALIACTVLWPPVRWLRNK-GVPPAAAVLVVLLLAVGVLAGVVA 97

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    + + +EL  +                      W             +  + + T
Sbjct: 98  AVAPAIVEQSQELAEQASAGIVQVRD------------WLGGPPLNISEAQLNSGVAAIT 145

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               +    I               +++   I+  FFF +DG      L          +
Sbjct: 146 DRLNSSSAQIASGVFTGVGAATSALVTLFAAIVVTFFFLKDGPGFIPWLRRTVGQPAAPH 205

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++   V   +        +++  + +++G    + GVP   AL +IT I   IP    
Sbjct: 206 LAEVLDRVWTTLGGFIRTQALVSFVDAVLIGIGLVVLGVPLAYALAIITFIGGFIPIVGA 265

Query: 260 -ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++     +  L+     +A  +         +    L+P+L    +KL  +     +  
Sbjct: 266 FVAGGLAVLIALVSNGPVDALIVLGIIVAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTL 325

Query: 319 GVRTMGLLGLFI 330
           G  T G++G F+
Sbjct: 326 GASTFGVIGAFL 337


>gi|298286885|sp|Q04454|Y178_BACPE RecName: Full=UPF0118 membrane protein BpOF4_00890; AltName:
           Full=ORF2
          Length = 385

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 109/334 (32%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
               + I   + + + LV+ YF+     P+++AL+      P  ++   K +       +
Sbjct: 37  FFTRRTIWIIISILLFLVAAYFILPVSLPLVAALLTALILTPAVNALQRKTKIKRNVAVM 96

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +    +   ++    + +  ++V                        + +    
Sbjct: 97  LVFTVFVVFIGLSGYYIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPE 156

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  ++               + +  +        Y ++ +  +IALF F  +   +
Sbjct: 157 LVQEINITVTNTLSDLRSNISDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRL 216

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            ++L S            ++  +  VI   F    +++I   +V             + +
Sbjct: 217 REKLYSYLSERTKEKVNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPEVALLM 276

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             I  ++  +P    I   A      +     +     L  A  L I+ +T+ P ++G  
Sbjct: 277 AFIIWLIDFVPIIGSIVILAPWAIFQLIVGDVSTGSKLLILAAVLLIIRRTVEPKVMGKH 336

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           I L  L T   +  G+   G++G  IGP+L+   
Sbjct: 337 IGLSPLATLIAMYLGLMLFGVIGFIIGPLLVIAF 370


>gi|296328008|ref|ZP_06870543.1| permease [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
 gi|296154964|gb|EFG95746.1| permease [Fusobacterium nucleatum subsp. nucleatum ATCC 23726]
          Length = 363

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 118/327 (36%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++ V ++ +FI+  L +    + 
Sbjct: 37  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIVFIIVIFIILSLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  I   + +++         +    + +  +  + + T   T  I 
Sbjct: 97  SIKTLNDIYPTISEKVIITGKNIANYLAKKNIYTINMDEIDNYFTNFVSNNTTNITKLIS 156

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I      + + F +  L+ +   + L        ++   +  +       Y  K   + 
Sbjct: 157 SILGSLIDWTIGFTNLFLAFVLAFLILLDKKHLIKTLENMIKIIFGVKNTPYIMKKLSLS 216

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             +      G  I++   GL +     + G P      ++  I  MIP    I    ++ 
Sbjct: 217 KDIFLGYVSGKIIVSTIVGLCVYIVLLITGTPYAALSAILLGIGNMIPYVGSIIGGIIAF 276

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +   I   +    + P ++G  + L        ++      G++G
Sbjct: 277 FLILLVAPIKTIILLVAITISQLVDGFIVGPKIIGNKVGLNTFWIIVSMIIFGNLFGIVG 336

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKE 354
           +F+G  +M+++ + + + +   ++  E
Sbjct: 337 MFLGAPIMSILKLFYVDLLKKAEQGGE 363


>gi|293396334|ref|ZP_06640612.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
 gi|291421123|gb|EFE94374.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
          Length = 349

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 63/345 (18%), Positives = 131/345 (37%), Gaps = 6/345 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I  +I+   + ++ F      A ++   +WP+     +      +   ++ T+ ++ LF
Sbjct: 2   FIAIMIVACFWVVQPFILGFAWASMVVIATWPLLIKLQNLLWGRRSLAVLVMTLILIVLF 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P+  L    +     +V+      +  IP   WL+ IP  G      +   ++     
Sbjct: 62  VMPIALLVNSVVDNSAPIVAWASTPGKVHIPDLAWLNSIPMIGDKVYSSYHTLINSGGGA 121

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I            +    A+  G     + +    M++     Y  G  ++  +     
Sbjct: 122 LIAKVQPYFGQTATWFAAQAAHIGR----FLMHCSLMVLFSVLLYARGEQVALGIRHFAV 177

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  LG+ + A+ + ++      + G+P+   L V+  I  +
Sbjct: 178 RLGAERGDAAVLLGGQAIRAVALGVVVTALVQSVLGAIGLAITGIPAATLLAVLMFIFCV 237

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G         I+L   G+    T L +W  +   + D  LRP L+     LP +   
Sbjct: 238 AQLGPLPVLIPAIIWLYWSGDTTWGTVLLVWSCVVGTL-DNFLRPVLIRMGADLPMILIL 296

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G++GG+   G++GLFIGPV++A+   +    +    E    +  
Sbjct: 297 SGVIGGLLAFGMIGLFIGPVVLAVSYRLLTAWMNEAPEPTADLDE 341


>gi|156743346|ref|YP_001433475.1| hypothetical protein Rcas_3407 [Roseiflexus castenholzii DSM 13941]
 gi|156234674|gb|ABU59457.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 407

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 104/343 (30%), Gaps = 17/343 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                 + I   +I  +    +  L     P + A I  +   P+ +    +        
Sbjct: 9   RFSPTVKLITIALIAALFFWLIRGLGNVLIPFVGAAITAYLFNPLITWLHRRARIGRAIW 68

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  V +  +       L      E   L +++                I     + E+
Sbjct: 69  IGLLYVVIGGIIYGLWRTLGPVIEREYSGLQAQIPHTLNLIQQELLLRDRIMVAGISVEV 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    +    +      +    IP        +  +  L  +  +I  F+   +  
Sbjct: 129 ---------APITEALREALADFGRRIPEHVPHLVAVAFETLLLFVTYLIVTFYLLLEAP 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I + L  L    + A  + +   +  ++     G  ++      +   A  L GV   +
Sbjct: 180 RIVEWLYELVPAPYRAEIRTLGSHIDHILAGYVRGTLMLIPIMATLTTIALTLLGVRYAL 239

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC--------LFLWGAIELFIVDK 294
            LG++T I+  +P   P S   ++I + +                 + L   +     D 
Sbjct: 240 VLGIVTGILETLPLLGPWSAAGIAITVALFQMPAPWGWPAWLIAGSIGLTYFVLRMFEDN 299

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            + P +VG  + L  +   F ++ G    G  GLF+   + A+
Sbjct: 300 FIIPHVVGPAVHLHPMLVIFAILAGGALGGPFGLFVAIPVTAV 342


>gi|20806564|ref|NP_621735.1| permease [Thermoanaerobacter tengcongensis MB4]
 gi|20515003|gb|AAM23339.1| predicted permease [Thermoanaerobacter tengcongensis MB4]
          Length = 354

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 112/341 (32%), Gaps = 2/341 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L             +   L D     + S
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRIRMYYIS 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++ +      +     +  +   F     ++    +  ++A FF  +D
Sbjct: 126 LPPNITSLIESNMQSIL--NYVSLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 184 KQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAIIGFDY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG++  I+  +P     +         I    +      L     + +V + + P +
Sbjct: 244 PFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVVVVRQMIEPKI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           VG  I L  L T   +  GV+  G +GL IGPV + +   +
Sbjct: 304 VGQSIGLHPLVTLLSMFIGVKLFGAIGLVIGPVFVVVFKAL 344


>gi|189468268|ref|ZP_03017053.1| hypothetical protein BACINT_04664 [Bacteroides intestinalis DSM
           17393]
 gi|189436532|gb|EDV05517.1| hypothetical protein BACINT_04664 [Bacteroides intestinalis DSM
           17393]
          Length = 376

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 114/349 (32%), Gaps = 11/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I+  +L+ L  L G   P   A +I +  +P+ S F  K    +  +++   +
Sbjct: 13  RAVILGAIIIGVLMLLKRLSGVLLPFFLAWLIAYLIYPLVSFFQHKLRLKNRIISIFCAL 72

Query: 69  SVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + +   V    L    + E   +   ++             + +   +  +       
Sbjct: 73  LTLTVIGSVAFYLLVPPMIQEFLRVKDLLIEYFSTTHTASNVPTTLSEFIRQNIDLHILE 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  IL    +    +  +   +      F    L    +++ + F   D  SIS+ 
Sbjct: 133 QMFSQENILDALKVTVPKLWSLISESINLLFGFFTVFL----ILLYIVFILLDYESISEG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +      I   V   +   F G  ++A+  G++    + +   P  + LG+ 
Sbjct: 189 WAHLMPKKYRKTVTGILNDVKDGMNRYFRGQALVALCVGILFSIGFLIIDFPLAIGLGLF 248

Query: 248 TAIMAMIPGGAPISFTAVSIYL----LIKGNIFNATCL--FLWGAIELFIVDKTLRPFLV 301
              + M+P    I F    +         G+ F            +   I D  L P ++
Sbjct: 249 IGALNMVPYLQIIGFVPTIMLAILKAADTGDNFWIIIASAAAVFIVVQIIQDGYLVPRIM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G    L        L      MG+LG+ I   L  L+   ++  I+  +
Sbjct: 309 GKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRYIINQE 357


>gi|187932049|ref|YP_001892034.1| PerM family protein [Francisella tularensis subsp. mediasiatica
           FSC147]
 gi|187712958|gb|ACD31255.1| PerM family protein [Francisella tularensis subsp. mediasiatica
           FSC147]
          Length = 368

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 112/355 (31%), Gaps = 6/355 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +     L  I 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRIVLVYIV 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +  +  L    + ++ + V +              LS     +   +     
Sbjct: 76  YILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDQINSI 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S   S+       + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 136 VSWFDSI---DWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +  +   +   +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALY-YVWNDLKPKLADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP    +  T   I +  L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +  +     ++      GL G+F    L  L           +   K +   N
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADIN 366


>gi|254373997|ref|ZP_04989479.1| hypothetical protein FTDG_00154 [Francisella novicida GA99-3548]
 gi|151571717|gb|EDN37371.1| hypothetical protein FTDG_00154 [Francisella novicida GA99-3548]
 gi|328676638|gb|AEB27508.1| Putative permease PerM (YfgO) [Francisella cf. novicida Fx1]
          Length = 368

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 112/355 (31%), Gaps = 6/355 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +     L  I 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRIVLVYIV 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +  +  L    + ++ + V +              LS     +   +     
Sbjct: 76  YILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRINSI 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S   S+       + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 136 VSWFDSI---DWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +  +   +   +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALY-YVWNDLKPKLADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP    +  T   I +  L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +  +     ++      GL G+F    L  L           +   K +   N
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADIN 366


>gi|187920328|ref|YP_001889359.1| hypothetical protein Bphyt_5642 [Burkholderia phytofirmans PsJN]
 gi|187718766|gb|ACD19989.1| protein of unknown function UPF0118 [Burkholderia phytofirmans
           PsJN]
          Length = 361

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 123/339 (36%), Gaps = 12/339 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESSTFLA 63
              + +   +++ ++   +Y        V+ A+   +  +P+       +          
Sbjct: 7   RTARQVWTALLIALLFFCIYMASSTLLVVVFAVFFSYLIYPMVDLVERIRPRRMPRVASI 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V V+ +  V           E   L++++    +  +P     + IP   +   L 
Sbjct: 67  ALVFVVVVAVIAVVGSIFGVQLQDEATHLLAQLPQLMKSDVP-----NRIPLPHFLEPLR 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + +   +           ++    + R      M      + ++ + I  F   ++G  
Sbjct: 122 ERIVDFVRGQIET-----GSDKAVPMARSVGLGVMHAASNLIYLVLIPILSFLLIKEGPQ 176

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +    L        W +I   +  ++      +  +++   +  G A+ L GVP    
Sbjct: 177 MREDFLDLLNDRHRTLWAEIVTDLNVLLSKYVRALLFLSLATLICYGMAFSLLGVPYAFL 236

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L V   ++  +P   P+   A+++ + +     +   L ++ A+     D  L P+L+  
Sbjct: 237 LAVSAGLLEFVPFAGPLGAVAITLVVAVFSGYPHLLWLVIFIALYRLFQDYVLNPYLMSE 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +++       GL+ G +  G+ G+F+   ++A++ +I 
Sbjct: 297 GVEVSPFLVIVGLLAGDQLGGVAGIFLAVPVIAMLKIII 335


>gi|221134612|ref|ZP_03560915.1| putative permease [Glaciecola sp. HTCC2999]
          Length = 356

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/353 (16%), Positives = 111/353 (31%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P  +M  +++  I   + F   +  PVL A+++ +           K   S T 
Sbjct: 10  RNKFSDPDALMLLLLIIFISAIILFWGSYIMPVLIAIVLAYLLDSSVGQLE-KLNLSRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V  + + ++  L L      +   LV ++ L  Q        L +    +  +E
Sbjct: 69  ATTIVMVLFIGISLIGTLSLLPTISKQSVNLVEELPLIWQGAQAWLLTLPEQYPELLHTE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T  +       +             I   +    +      + +I + + +FF  +D 
Sbjct: 129 QITSMMGKVNESLV--------GITQNIISVSFSSLVSVGALLIYLILVPLMMFFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 L  L        + ++   +   I +   G  I  +  G     A+ L  +   
Sbjct: 181 PLFMDNLSYLLPKERRLIY-QVGSEMNTQIGNYIRGKVIEILIVGAASCIAFVLMDLRYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + LGV+  +  +IP       T    +  L   G       L L   I   +    + P 
Sbjct: 240 ILLGVLVGLSVLIPYIGAAVVTIPVAFVALFQWGFSAEFGYLMLVYFIIQALDGNLIVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  L     ++      G  G+F    L  L+  +       + E+
Sbjct: 300 LFSEAVALHPLYIIIAVLFFGGIWGFWGVFFAIPLATLVKALISAWSNDLDED 352


>gi|255975625|ref|ZP_05426211.1| membrane protein [Enterococcus faecalis T2]
 gi|257082332|ref|ZP_05576693.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257416315|ref|ZP_05593309.1| membrane protein [Enterococcus faecalis AR01/DG]
 gi|307277837|ref|ZP_07558921.1| hypothetical protein HMPREF9515_00171 [Enterococcus faecalis
           TX0860]
 gi|255968497|gb|EET99119.1| membrane protein [Enterococcus faecalis T2]
 gi|256990362|gb|EEU77664.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257158143|gb|EEU88103.1| membrane protein [Enterococcus faecalis ARO1/DG]
 gi|306505234|gb|EFM74420.1| hypothetical protein HMPREF9515_00171 [Enterococcus faecalis
           TX0860]
          Length = 366

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 115/342 (33%), Gaps = 11/342 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           L G  +P ++  +I +                      +       ++  + ++ +F++ 
Sbjct: 23  LLGILSPFITGFVIAYLLSGSQKKIEVLLERVPLPVVKKAKHGLSVLLLYLIILFIFVLT 82

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L ++    +  + +L + +     H +     L D  G +  + +     S  + L    
Sbjct: 83  LNYIVPLLISNLVDLANSLPTFYDHMVQFVMSLED-KGILKTAAIEKYLNSVLKDLSPER 141

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T  +  +          FL+  L++I  I AL F       + +    L      
Sbjct: 142 FLNQWTQALFSLGTLTKNVSSFFLNAFLTLIISIYALVFKQSILTFVEKAAHKLLSEKVY 201

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              +       K+         + A   G+       +  V   V LG++  I  MIP  
Sbjct: 202 KQTQTWLNTTNKIFYKFISCQFLDACIIGVSSTILLSILNVKFAVTLGILLGICNMIPYF 261

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I       +  L  G +  A  + L   I   I    + P ++G  + +  +     +
Sbjct: 262 GSIFASIVAGVITLFTGGVTQAITVLLVLLILQQIDGNIIGPRIMGDALNVNPILIIVSI 321

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G    G+LG+F+   + A+I +I  E +   KEN + + S
Sbjct: 322 TIGGAYFGVLGMFLAVPVAAIIKIIVSEWLNESKENDKIVDS 363


>gi|159029414|emb|CAO90790.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 365

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 127/345 (36%), Gaps = 13/345 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  +++     +L+   +  ++A ++ F           +   + +    I  +  +
Sbjct: 20  LLFLNGWLLFQLFSYLEPLVSIFVTASLLAFVLDVPIKLLQRR-GVNRSGSIAIVFLIAL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  V  L L    + ++  L++ +    + G    + L             T+  +   
Sbjct: 79  LILSVLGLILIPQIVEQLSSLINSLPQWIESGTEQIQNLEKW--------DKTQKYAIYI 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I   +   TN +  +      F +  ++  L+I+F+++   F    G  I + + S 
Sbjct: 131 EQSITQLSERLTNVLQTLSTQLLSFVLGTINSILNILFVLVLTVFLVLYGEQIWEGILSW 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +  K+  I+ +   + F G TI+A    L     + +  V   +  GV   + 
Sbjct: 191 IP---APWNLKLRTIIRQTFETYFAGQTILAGILSLAQIFVFVILKVDYALLFGVAIGLT 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP  +  +   +S  LL+  + +    +     I   I D  + P L+GG I L  + 
Sbjct: 248 TLIPFASAFTIIGIST-LLMFQDFWLGLKVLTLTIIVGQINDNVIAPRLMGGMIGLNPVW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               L  G +  G+LGL I   + +++           +E +  +
Sbjct: 307 IILSLFIGGKVAGILGLLIAVPIASVLKSTIDIIRSQQREKEPVV 351


>gi|328675694|gb|AEB28369.1| Putative permease PerM (YfgO) [Francisella cf. novicida 3523]
          Length = 368

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 113/355 (31%), Gaps = 6/355 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +     L  I 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRIVLVYIV 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +  +  L    + ++ + V +              LS     +   +     
Sbjct: 76  YILFLIALLSLIFVLLPIIINQLIDFVKQASHILSTLKTSLEELSVKYPTILTEDRINSI 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S   S+       + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 136 VSWFDSI---DWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +  +   +   +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALY-YVWNDLKPKLADYVRGKAIELIIVSTLTYVGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP    +  T   I +  L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +  +     ++      GL G+F    L  L           +K  K +   N
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMLRNHLKGKKTQTDIN 366


>gi|150376865|ref|YP_001313461.1| hypothetical protein Smed_4731 [Sinorhizobium medicae WSM419]
 gi|150031412|gb|ABR63528.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 359

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 122/326 (37%), Gaps = 13/326 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            F   +  AL++     P++    S+        A    ++V  +  VPL F+    + E
Sbjct: 45  PFLPALTWALVLAVMFQPLHRRVKSRFRYPDAAAAATVAIAVFVV-AVPLTFMAERLVNE 103

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
             +    +  A + G                +       +       L    +  +   +
Sbjct: 104 AAKGAKIIEEALRSGT----------WRDALANYPRLAPAVVWIETQLDLAGIAGSATSW 153

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +  F++ F    +   +  +     LF+F RDG  +   L      L      ++   V 
Sbjct: 154 LTNFSASFVRGSVAQIIDAVLTFYFLFYFMRDGRQVLAALKEHSP-LSEQDMNRLFTRVH 212

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSI 267
           + + +   G   +A  +G + G  +WL G+P+ V  G+   ++A++P     I +   ++
Sbjct: 213 ETVHAVVFGTVAVAAVQGAMGGLMFWLLGLPAPVVWGLAMGLLAVVPVLGAFIVWLPAAL 272

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L + G    A  L  WGA  +  +D  L P  VG  +KL  L  F  ++GG+   G  G
Sbjct: 273 SLALSGEWGKALILAGWGAGVVATIDNLLYPIFVGDRLKLHTLTAFMSMIGGIIVFGSAG 332

Query: 328 LFIGPVLMALIAVIWKESIMAIKENK 353
           L IGPV   +  ++         E +
Sbjct: 333 LVIGPVAFTVTLLLLDIWRQHNTEPR 358


>gi|148544571|ref|YP_001271941.1| hypothetical protein Lreu_1354 [Lactobacillus reuteri DSM 20016]
 gi|184153930|ref|YP_001842271.1| transport protein [Lactobacillus reuteri JCM 1112]
 gi|227363690|ref|ZP_03847801.1| possible permease [Lactobacillus reuteri MM2-3]
 gi|325682899|ref|ZP_08162415.1| permease [Lactobacillus reuteri MM4-1A]
 gi|148531605|gb|ABQ83604.1| protein of unknown function UPF0118 [Lactobacillus reuteri DSM
           20016]
 gi|183225274|dbj|BAG25791.1| transport protein [Lactobacillus reuteri JCM 1112]
 gi|227071273|gb|EEI09585.1| possible permease [Lactobacillus reuteri MM2-3]
 gi|324977249|gb|EGC14200.1| permease [Lactobacillus reuteri MM4-1A]
          Length = 375

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 118/363 (32%), Gaps = 21/363 (5%)

Query: 12  MRWMIMFIILV-----------SLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKE 56
           +  + +  ++             L F+   F P++ +  + +   P+   F+     K +
Sbjct: 14  LLLLTVATLIWVCTKIQFIFQPFLTFISVVFVPLIISGFLYYMLNPVLKLFLKLRIGKFK 73

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S    +++  ++++ + I  +  L    + E+  LV  +         +          
Sbjct: 74  MSRGIASLLIVIALILIIIGGISLLIPTIVKEISSLVRNMPQTVSGIQTLIN------DT 127

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +  S L    L+                 +  +         +  +  +  I + + LF+
Sbjct: 128 VQHSFLRNVDLNTYYRQFDHQIAGYAQTILKGLSERVGDIVGVVTNITVVTITVPVMLFY 187

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG  +   +             ++   +   + S   G  I  +  G+     Y + 
Sbjct: 188 MLKDGSKLGPSIQKWLSPHHAKEVNELLTKMNNTLSSYISGQMIECLFVGITTSIGYMII 247

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G P  + LG++  +  +IP   P    A ++++ +         + +   +   I    +
Sbjct: 248 GQPLALVLGIVAGLTNIIPYIGPYIGIAPALFVALTMAPEKLIWVIVVVIVVQQIDGNII 307

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P ++G  +++  L     L+      G+ G+ +     A+I  + +      +      
Sbjct: 308 YPNIIGKTLQIHPLTIIMLLLAAGHIAGVGGMILCIPFYAVIKTVCEYFFDIYRIEHPLE 367

Query: 357 SSN 359
             +
Sbjct: 368 EED 370


>gi|330899208|gb|EGH30627.1| hypothetical protein PSYJA_17246 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 319

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 141/322 (43%), Gaps = 5/322 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           +  +  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMCLCWMLLVAAPLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVAL 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         ++I   +++ G   L+  LSI+F      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMATLKPHLGQVGNWILARSAQIGSGILELTLSIVFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++  + SL E L     +    +V   ++    G+   A  + ++    + +AG+P  + 
Sbjct: 178 LAAFVLSLLERLIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALV 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L+  
Sbjct: 238 LGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYLISR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGL 325
              LP +    G+ GG+   G 
Sbjct: 298 GGNLPLVIVLLGVFGGLLAFGF 319


>gi|320533633|ref|ZP_08034263.1| hypothetical protein HMPREF9057_02151 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320134141|gb|EFW26459.1| hypothetical protein HMPREF9057_02151 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 437

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 100/336 (29%), Gaps = 20/336 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                    + I  V LY ++  FAP   AL +  T  P+ S     +       A  A 
Sbjct: 23  ETVAYLLAALTIGAVGLYLIQDLFAPAFFALTLVVTVRPLVSWMTRHRV-PRVVAATAAI 81

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +    ++    L       +  L                 L+ +              
Sbjct: 82  LLIFTFVVLLFAALAVAVAQLVDTLPQYAPKFQAIWRQTETQLNGMGV------------ 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               ++       L T+ +  + +               +  +++ L F      +   +
Sbjct: 130 -DQSTVLKEVTDVLDTSRLVMVAQTVLGQLTSASAMLGVMAMVVVFLMF-----DTAKIE 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    +             + +RS ++  T+  +   ++     W   VP  +  GV+
Sbjct: 184 IRTAALGVLKPGMAAAMVSFCEAVRSYWMVSTVFGLIVAVINAVTLWYLDVPMAITWGVV 243

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + I   IP    +        L L+    + A  + L      F++   ++P   G  + 
Sbjct: 244 SFITNYIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYVAANFVIQSLIQPKFTGDAVG 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    TF  L+     +G +G  +   L   +  + 
Sbjct: 304 LNTTTTFLCLLFWSTVIGAMGTILAVPLTLFVKALL 339


>gi|255009701|ref|ZP_05281827.1| putative transmembrane protein [Bacteroides fragilis 3_1_12]
 gi|313147487|ref|ZP_07809680.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136254|gb|EFR53614.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 379

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 114/344 (33%), Gaps = 10/344 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
            ++  +L+    L G   P   A +I +  +P+   F  K            A  S+  +
Sbjct: 19  ALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLRFKSRIISIFCALFSITII 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I     L    + E+  +   +V    +G      +           +  + L+   S 
Sbjct: 79  GIAIFYLLVPPMLAEIGRMNDLLVTYLTNGAYRSGTVPPTLSEFIHRHIDLQALNRILSE 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           + +  T  +T    +     S   +  L    +   +++ + F   D  SI++    L  
Sbjct: 139 ENIMNTIKETVPKLWALVAES---INILFSVFASFIILLYVVFILLDYESIAEGWLHLLP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +  +   +   +   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 196 GKYRTFASNLVNDIQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 255

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    I  +       +          +   +   I D  L P ++G    L
Sbjct: 256 VPYLQIIGFLPTVILAILKAADTGENFWVILAGALVVFIVVQAIQDGFLVPRIMGKITGL 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      +G+LG+ I   L  L+   ++  I+  + 
Sbjct: 316 NPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFIINKER 359


>gi|308068357|ref|YP_003869962.1| Predicted permease [Paenibacillus polymyxa E681]
 gi|305857636|gb|ADM69424.1| Predicted permease [Paenibacillus polymyxa E681]
          Length = 372

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 119/354 (33%), Gaps = 10/354 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++  +L+S+Y L     P L A ++ +   P+     +K          ++  
Sbjct: 11  RALWVAIVIVALLLSIYALFPLIYPFLFAWLVAYAMNPLVGFLRNKARMPRWTAVTVSLF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV----------PRWLSDIPGGMW 118
             +    + L       + E+ +L        +    +             + +I   + 
Sbjct: 71  VYLGGIAIILSAAITRMVREVIKLAMTFDGHIERFKSLFIDWTQSDLIQNVIIEINHFIR 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +  +   ++        + +   T  +               +    ++ +++A FF  
Sbjct: 131 DNPDYQHTINSNIDKTTQTVSSAVTTLVAQFFNGVLNLLTSLPNMGAVLMVIVLAAFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D    S+ L +            I   + K +        II     L +    ++  V
Sbjct: 191 KDWDRHSRMLSNTIPDTIRKPLSDIWHDLRKALYGYLRAQFIIISITALTVIVGLFILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            S   +G++  ++ ++P           I                   I L I  + + P
Sbjct: 251 ESAFTIGLMIGLVDLLPYLGVGIVMIPWILYAYMSGNLALGVGLSILYIILLIGRQIVEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++   + L  LPT  G+  G++  G+LGL IGPV + ++  + + +++    N
Sbjct: 311 KVLASSVGLNPLPTLIGMFIGLKLFGVLGLIIGPVSLIVVDALNRANVIQDLRN 364


>gi|325001994|ref|ZP_08123106.1| integral membrane protein [Pseudonocardia sp. P1]
          Length = 445

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 101/320 (31%), Gaps = 14/320 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + + I    +        PV+ A+++     P     I  +       +++  +
Sbjct: 55  RVALIAVGLVIAGWVIGTFWVVVWPVVLAILLTTVLRPPAGWLIRHRV-PPALASIVVLL 113

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +       + +      + +++ + V+ A                  W S        
Sbjct: 114 VGIGAVSGLFVAIAPSVAGQTQQITTGVIQAVGQIQQ------------WVSGPPLNLGD 161

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I   T      I  I               L+++  ++  FFF +DG      +
Sbjct: 162 GQIGDIINQVTAQLQQSITAIAGGVLTGVSTVASGLLALVLALVLTFFFVKDGPRFLPWI 221

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++       +  ++   +  V+        ++++ + + +G    L  VP  + L ++T
Sbjct: 222 SAISGRTAGRHLTEVLSRMWSVLGGFIRVQALVSLIDAVFIGIGLVLLSVPLALPLAILT 281

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP     ++     +  L+      A  + +   +   +    L+PFL G  +KL
Sbjct: 282 FLGGFIPIVGAFVAGALAVLIALVTQGFTTAVLVLVLILVVQQVEGNVLQPFLQGQSLKL 341

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
                   +  G    G+ G
Sbjct: 342 HGAVVLLAVTAGSSLAGIAG 361


>gi|323705871|ref|ZP_08117443.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534867|gb|EGB24646.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 354

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/340 (14%), Positives = 106/340 (31%), Gaps = 2/340 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R        I+   ++    + ++ L  F  P   AL +     P       K +     
Sbjct: 7   RYQSTIRNSIVILAVVLSFYLFVFKLIPFLMPFAVALFLAILIDPAVEFSEKKLKIPRGL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +    + ++ +  + +  L    + E+  L        ++   V   L D     + S 
Sbjct: 67  SSAFFILLLIGIIGLLISLLVTQLVFELNTLAEHAPSYTKNFDVVISDLIDRIRRYYVSL 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     +L+ +      +        +         ++    I  I++ FF  +D 
Sbjct: 127 PTNISTFLESNLQSILNNI--SVYAKNFAGWILGLATKLPNFFFMSIITIVSTFFLSKDK 184

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           + I   +       +  + + I   + + +         I     L +     + G    
Sbjct: 185 WLILNFIKRQFPSNWAFHAENIKGDLFQTLIGFIRAEITIMFITFLEVSIGLTIIGFDYA 244

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LG++ + + ++P     S         I    +      L     + +V + + P +V
Sbjct: 245 FLLGLLVSFIDILPVLGSGSVLVPWALYNIFTKNYLIGIYLLIIYAIVTVVRQMIEPKIV 304

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  I L  L T   +  G R  G LGL +GPV + +    
Sbjct: 305 GQSIGLHPLVTLLSMFIGARLFGGLGLIMGPVFVVVFKTF 344


>gi|269967144|ref|ZP_06181211.1| hypothetical protein VMC_26410 [Vibrio alginolyticus 40B]
 gi|269828281|gb|EEZ82548.1| hypothetical protein VMC_26410 [Vibrio alginolyticus 40B]
          Length = 382

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 123/341 (36%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +I  +++ +   +K F  PV+   II     P+               A  
Sbjct: 17  MVESAIRIGLIFVLLMFTYDIIKPFILPVIWGAIIAVALMPLTQKLQRVYGGRRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + PL+ +    +      +  +             ++D P           
Sbjct: 77  IALLGIALLVTPLVMVSGSIVDGATHALEVLQNGQVKIPGPKPSVADWPIVGDKLYEVWT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I +       G               L   L  I  +     F     S +
Sbjct: 137 LFATNLEQAIQTFMPQIKAG----LTSLLGTLGGVLGSLLLSILSLAIAAGFMTYSESAA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L 
Sbjct: 193 SGLRTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+ +    A ++   V  ++ +  +   AT   +W  +   + +   +P L+G  +
Sbjct: 253 LLLMILCIAQLPALLAVLPVIGFMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +P      G +GG+   G++GLF+G V++A+   ++   +
Sbjct: 312 DVPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWL 352


>gi|291485147|dbj|BAI86222.1| hypothetical protein BSNT_03979 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 279

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 102/289 (35%), Gaps = 10/289 (3%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  V         L       ++++ +L   + +  +    +   + +           
Sbjct: 1   MVIYVLFFGGIGWALYKGVPVLIVQLTDLSENIPMFAETYNGLLLHVHN----------H 50

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T         +I                 A       LDY L    +   +F+  +D   
Sbjct: 51  TDDWPDGMHHRIDKMIRQTETFFAGTIEGAISGIRNVLDYFLIAATIPFLVFYMVKDIEL 110

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + +  L    +        R V   +     G  ++ +  G++ G ++W+ G+P  + 
Sbjct: 111 MKKTVWYLTPKSWRKRGSAFLRDVDDSLGDYIRGQLLVCLILGVIAGISFWVFGLPYPLI 170

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG+I+ +  +IP   P      ++ + +  ++     + +   I  F+    L PF+VG 
Sbjct: 171 LGLISGVTNVIPYFGPFIGAVPALLIAMTISVKAVLVVVITVFILQFMEGNILSPFIVGR 230

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +K+  +     L+ G    G++G+ +     A++ V+    +    E+
Sbjct: 231 SLKMHPVVIMLALLAGGELAGIVGMILAVPATAVLKVMMIHFLRMRTEH 279


>gi|254481333|ref|ZP_05094578.1| hypothetical protein GPB2148_1806 [marine gamma proteobacterium
           HTCC2148]
 gi|214038496|gb|EEB79158.1| hypothetical protein GPB2148_1806 [marine gamma proteobacterium
           HTCC2148]
          Length = 337

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 123/331 (37%), Gaps = 4/331 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               F   +L ALI+G T +P++    SK   +    A +  ++ + L   P + L    
Sbjct: 1   MFNPFLNLMLWALILGMTLFPLHQKLASKFGGNQGRAATVMVLAGLLLLGYPAVKLSSSL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ ++                 + + P          +  ++     +        + 
Sbjct: 61  ASQLTDIHHAYEAGTLALPEPNASVENWPVIGKNVYSAWQEAANNLPEFLADNKANIESV 120

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I      A         +  + I   I + F +    +       +           ++ 
Sbjct: 121 IKSGLAVAKSTAGGIGLFMAAFILAGIMMAFGHGGSGATLTIFSRIAGPEQGPKMHNLAT 180

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +     RS  +G+  +A+ + +++G  + L GVP+   L +I  ++A++   A +    V
Sbjct: 181 M---TTRSVAVGVLGVAVIQAVLMGLIFILIGVPAAGLLALIIMMLAIVQLPAMLVGIPV 237

Query: 266 SIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            I++   G+        +    +   + D  L+P L+G  +  P      G +GG+ + G
Sbjct: 238 IIWVWNGGDAGATMNTFWTVVILVSGLADNVLKPLLLGRGVDAPMPVILIGALGGMISAG 297

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +GLFIG V++A+   I+ + +   +E  E 
Sbjct: 298 FIGLFIGAVVLAVGYQIFMQWVAEHEEELET 328


>gi|222053922|ref|YP_002536284.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221563211|gb|ACM19183.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 347

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 99/324 (30%), Gaps = 12/324 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF+    + +L++L++ +   P+       K         I  V++  +  V    L  Y
Sbjct: 27  YFIHHTLSALLTSLVLAYLLNPLLKYLE-LKGLGRLPALGIIYVALAAILTVSSFILAPY 85

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              +++ L   +     +               ++ E     L   +             
Sbjct: 86  LGHQLQTLKDTIPYYVLNLKGELTQWQFQLSPYYSGEEGIWLLQRGKESFDRM------- 138

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +                ++I   I +FF           +  L           + 
Sbjct: 139 -TQALSGLGYNRLTAIFYGIFNLILAPILIFFMLLYKQMCKDMVKRLIPLGHRRQMIDLG 197

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R +   +    +GM I      ++   A W+  +   V  G++    +++P         
Sbjct: 198 RRINSSLERFIIGMAIDCTLVAILTAFALWMLDIQFAVLNGLLAGFASVVPILGVTIAVI 257

Query: 265 VSIYL--LIKGNIFNATCLFLWGAIE-LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
             + +     G+I     + L   I  + I    ++P ++   ++L  L   F ++    
Sbjct: 258 PPLLIGYAQTGDISVIAKVCLLYFIINVIIEGNLIKPLVMRHTLRLNPLVVIFAVMAMGE 317

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
            MG  G+ +   L A++ +   E 
Sbjct: 318 LMGFWGIVLAIPLAAVVKICAGEF 341


>gi|56707621|ref|YP_169517.1| PerM family protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|89256861|ref|YP_514223.1| PerM family protein [Francisella tularensis subsp. holarctica LVS]
 gi|110670092|ref|YP_666649.1| PerM family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115315242|ref|YP_763965.1| PerM family protein [Francisella tularensis subsp. holarctica
           OSU18]
 gi|118497169|ref|YP_898219.1| PerM family protein [Francisella tularensis subsp. novicida U112]
 gi|134302443|ref|YP_001122413.1| PerM family protein [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156503035|ref|YP_001429100.1| PerM family protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009246|ref|ZP_02274177.1| PerM family protein [Francisella tularensis subsp. holarctica
           FSC200]
 gi|194323467|ref|ZP_03057244.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208778962|ref|ZP_03246308.1| conserved hypothetical membrane protein [Francisella novicida FTG]
 gi|224456691|ref|ZP_03665164.1| PerM family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254368137|ref|ZP_04984157.1| permease perM [Francisella tularensis subsp. holarctica 257]
 gi|254370138|ref|ZP_04986144.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874441|ref|ZP_05247151.1| perM family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|290954339|ref|ZP_06558960.1| PerM family protein [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312226|ref|ZP_06803025.1| PerM family protein [Francisella tularensis subsp. holarctica
           URFT1]
 gi|56604113|emb|CAG45112.1| PerM family protein [Francisella tularensis subsp. tularensis SCHU
           S4]
 gi|89144692|emb|CAJ80023.1| PerM family protein [Francisella tularensis subsp. holarctica LVS]
 gi|110320425|emb|CAL08495.1| PerM family protein [Francisella tularensis subsp. tularensis
           FSC198]
 gi|115130141|gb|ABI83328.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. holarctica OSU18]
 gi|118423075|gb|ABK89465.1| PerM family protein [Francisella novicida U112]
 gi|134050220|gb|ABO47291.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134253947|gb|EBA53041.1| permease perM [Francisella tularensis subsp. holarctica 257]
 gi|151568382|gb|EDN34036.1| hypothetical protein FTBG_01242 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|156253638|gb|ABU62144.1| putative membrane protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|194322322|gb|EDX19803.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|208744762|gb|EDZ91060.1| conserved hypothetical membrane protein [Francisella novicida FTG]
 gi|254840440|gb|EET18876.1| perM family protein [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158778|gb|ADA78169.1| PerM family protein [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 368

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 112/355 (31%), Gaps = 6/355 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +     L  I 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRIVLVYIV 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +  +  L    + ++ + V +              LS     +   +     
Sbjct: 76  YILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRINSI 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S   S+       + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 136 VSWFDSI---DWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +  +   +   +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALY-YVWNDLKPKLADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP    +  T   I +  L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +  +     ++      GL G+F    L  L           +   K +   N
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADIN 366


>gi|194466814|ref|ZP_03072801.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
 gi|194453850|gb|EDX42747.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
          Length = 372

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 110/337 (32%), Gaps = 10/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           FI    L F+   F P++ +  + +   P+   F+     +   +    +++  + ++ +
Sbjct: 31  FIFQPFLTFISVVFVPLIISGFLYYMLNPVLKLFMKIKIGRFHMNRGIASLLIVLLLIVI 90

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  +  L    + E+  LV  +         +     +         L    L+     
Sbjct: 91  VVGGIAMLIPPVVKEISTLVRNMPQTVTGIQHLINDTIEHSF------LRNVDLNAYYRQ 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  +         +  +  +  I + + LF+  +DG  +   +     
Sbjct: 145 FDHQLAGYAQKVLQGLSTRVGDIIGMLTNVTVVTITVPVMLFYMLKDGSKLIPSIQKWLS 204

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    +   +   + S   G  I  +  G+     Y + G P  + LG++  +  +
Sbjct: 205 PHHAKEVNDLLGKMNSTLSSYISGQMIECLFVGVFTSIGYVIIGQPLAIVLGIVAGLTNI 264

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++++ +         + +   +   +    + P ++G  +++  L   
Sbjct: 265 IPYIGPYIGIAPALFVALTMAPNKIIWVIVVVIVVQQVDGNIVYPNIIGKTLQIHPLTII 324

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+      G+ G+ +     A+I  + +      +
Sbjct: 325 MLLLAAGHIAGIGGMILCIPFYAVIKTVCEYFFDIYR 361


>gi|282848785|ref|ZP_06258179.1| putative membrane protein [Veillonella parvula ATCC 17745]
 gi|282581499|gb|EFB86888.1| putative membrane protein [Veillonella parvula ATCC 17745]
          Length = 373

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/374 (14%), Positives = 119/374 (31%), Gaps = 23/374 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSS 50
           M+E     Q I   ++  I+++    +             F P++    I F    +   
Sbjct: 1   MKEFKYYKQLIGAIILAGIMIMMALRISDIASGLDAIFTAFVPLIVGACIAFVLDILVVR 60

Query: 51  FISKKEE----------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
           +                      +++ V++  +            +  M  +V+      
Sbjct: 61  YERWLWPKCGSGWKYKIRRPLSLLLSFVTISVIVYFIARMALPQLIHSMSIIVAASPQLY 120

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                   W+  I   +  +   T   +              T G  +I           
Sbjct: 121 TDFQT---WMQHITETVPMASNQTIIDALSGENIAKYTREWGTKGGTYIVNAMGTVLSWT 177

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           L+  L +IF +  L    R      + L +     +      ++R+  +   + F+G  I
Sbjct: 178 LNIGLGLIFAVYMLLDKERLMLQGKRILKAYASDEWVNRVSYVTRVAVQTFSNFFVGQFI 237

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            A+  G+++G   WL  +     +  +  +  +IP         +   +L+  +  +A  
Sbjct: 238 DALVLGVMVGITLWLFNIEYATTIACVIGLTGLIPLLGIYVGGIIGAVMLLTVSPMDALI 297

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +   +   I    + P +VG  + LP L  F  ++ G   MG+ G+ IG  L+A    
Sbjct: 298 YVIILEVLHQIESNFIYPKIVGNSVGLPGLWVFAAVIVGGSLMGVTGMLIGVPLVATCYK 357

Query: 341 IWKESIMAIKENKE 354
           +    +     + E
Sbjct: 358 LIMTDVDGRLASNE 371


>gi|262198519|ref|YP_003269728.1| hypothetical protein Hoch_5351 [Haliangium ochraceum DSM 14365]
 gi|262081866|gb|ACY17835.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 364

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/339 (10%), Positives = 99/339 (29%), Gaps = 13/339 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + +  +++ +L      + + +++      +                 +  + ++ LF 
Sbjct: 22  AVVVAYLAIGYLSQVVLVIFAGVLLAVFLDGLTRLLCRHTPLPRWLSLTLVCLGLVALFA 81

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +           +++EL  ++ +A +               +   +  T+ +S       
Sbjct: 82  LAGWQSGEKIGAQVRELSERIPVALERLRSWVDGYDWAQPVVTQFDKPTEVMSKVAP--- 138

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                        +    +    + L    +I  ++    +           +  L    
Sbjct: 139 ----------GADMIGRITGVFSVVLGAATNIFIVLFLGIYLAASPGLYVGGVAWLAPAP 188

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                +++   + + +R    G        G+       +AGVP    LGVI   ++ IP
Sbjct: 189 KRERTRQVLAQLGRALRRWLGGRFASMAVVGVFTAVGLLIAGVPLAFILGVIAGALSFIP 248

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI      + + +           +       +    + P +    + +P       
Sbjct: 249 YIGPILSVVPGLLMALTIGPQTVLFALMVYFAAQLLESYLITPLIQRRVVSMPPAVLIMA 308

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +      GLLG+ +   L  ++ V+ +   +     ++
Sbjct: 309 QMIMGVVAGLLGVLLATPLAVVVIVLVQMLYLQDVRGED 347


>gi|300718851|ref|YP_003743654.1| hypothetical protein EbC_42760 [Erwinia billingiae Eb661]
 gi|299064687|emb|CAX61807.1| Putative membrane protein [Erwinia billingiae Eb661]
          Length = 357

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 124/344 (36%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +++  +    +++   + +IL  +        P L AL +     P+ +  + K      
Sbjct: 4   LQQEKIGQNMLLKMATLIVILAGIKAASEILVPFLMALFLAIVLNPLVTYLMRK-GVRRG 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  + V+ +  + +  +    + E  ++  ++    +H + + +  +       ++
Sbjct: 63  LAISLVMLGVLIVIGLLVAMVAGS-VNEFSDIYPQIRAQMEHKLGIVQHFAATFHINLST 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   + L                   + +   A+     F     +++ +++ + F   +
Sbjct: 122 ERMAERLD-----------------PNSLMNVATTVLSQFSGAMTNVVLLLMTVVFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +L      + P           K +       T+I++  G  +  + +L GV  
Sbjct: 165 VHHLPYKLRFAL--VNPKIRIAGLHKALKGVTHYLALKTLISLITGAAVWLSLFLLGVKF 222

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  ++  IP   PI       I  L+   +F+A  + +   +   +    L P 
Sbjct: 223 SLLWGVVAFVLNFIPNIGPIIAGIPPLIQALLLNTVFDAAMVAVLFTVIHMVFGNMLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 283 VMGKGLGLSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|167754689|ref|ZP_02426816.1| hypothetical protein CLORAM_00192 [Clostridium ramosum DSM 1402]
 gi|167705521|gb|EDS20100.1| hypothetical protein CLORAM_00192 [Clostridium ramosum DSM 1402]
          Length = 396

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 107/360 (29%), Gaps = 14/360 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-----------KKEESS 59
           I   M +  I   +  L G    +   +II +                         +  
Sbjct: 28  IYLLMNLGNIYGMISTLLGTLVYLFYGIIIAYILNQPMKLIEKQITKYCTKTSFLYRKKR 87

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               +   +  +CL ++    +    +  +  L+S               +       + 
Sbjct: 88  GLSIIATLILFICLIVLIASIVIPNLISSLISLISNTSAFLTSVFNNIDDIFIYFNIDFR 147

Query: 120 SELWTK---HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            E        ++ P    +     + T     I   A+ F   F       IF +  L  
Sbjct: 148 MENIASVKDLINMPWQDMVGQALDILTRSAGGIMNNATNFLSTFGVVFTGFIFSLYLLGN 207

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  + + + +L  +         +    +V  +   G  + A    ++      L 
Sbjct: 208 KETFLRQLRKAIGALCGYKVTCVIFDYAHKTNEVFSNFISGQLVEACILWVLYYVTMKLF 267

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             P    +  I +I + +P   PI+   V   L++  +   A    ++  I   + D  +
Sbjct: 268 NFPYPELIATIISIFSFVPFFGPIAAMFVGAVLILSKDALMAIWFMVYFQILSQLEDNFI 327

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P +VG  + LP +     +       G+ G+ I     A +  +  E I  I + ++ +
Sbjct: 328 YPRVVGNSVGLPGIWVLLSIFVFGDLFGVFGMVIAVPSAACLYSLASEVINMILKKRKLV 387


>gi|319937594|ref|ZP_08011999.1| hypothetical protein HMPREF9488_02835 [Coprobacillus sp. 29_1]
 gi|319807434|gb|EFW04043.1| hypothetical protein HMPREF9488_02835 [Coprobacillus sp. 29_1]
          Length = 404

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/368 (10%), Positives = 108/368 (29%), Gaps = 28/368 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPV--------------LSALIIGFTSWPIYSSFISKKEES- 58
           W+I+ ++ ++ Y +      +              + A++  +           K ++  
Sbjct: 12  WLILAMLSITFYLVASHLIIIEKVFLFLLDLLQPLIIAIVFAYILNIPMMFIEQKIKKHS 71

Query: 59  ----------STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                           +  +  + + I+ + F+    +  + +L+S +    +  +    
Sbjct: 72  HDRGIINRGARGIAITLTIIFALIVLILIVSFILPKVIESLAQLLSNMGNLLKGIVTSID 131

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            +       +  E   +  +            +                     + +  +
Sbjct: 132 EVFIWLNIDYRVENIVQIDNIVNMPWNDIFKNVINFLASSANGLLDNAVTFTGTFFVWFM 191

Query: 169 FMIIALFFFYRDGF---SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
             + +L+           + +                       + ++   G    A   
Sbjct: 192 AFMFSLYILSGKERLLSQLRKVFIVFLREERAMALFDYGHQANVIFKNFITGQLTEACII 251

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G++        G P    + +I A+ +++P   PIS   +  +L++  +        ++ 
Sbjct: 252 GIIYYIGMIFFGFPYPELIAMIIAVFSLVPVFGPISAMIIGAFLVMSQDFVTMIWFIVFF 311

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   I D  + P +VG  + LP L     +       GL+G+     L A    ++   
Sbjct: 312 QVLSQIEDNLIYPRIVGKSVGLPGLWVMLSIFILGDLFGLVGMITAVPLTAFAYTLFGRW 371

Query: 346 IMAIKENK 353
           I  + + +
Sbjct: 372 IHNVLKRR 379


>gi|295091707|emb|CBK77814.1| Predicted permease [Clostridium cf. saccharolyticum K10]
          Length = 417

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 105/362 (29%), Gaps = 16/362 (4%)

Query: 1   MRETMLNPQGIMRWMIMFI----ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M++ ML     +  + +      +   L        P L    I F              
Sbjct: 8   MKKIMLLILYTIVILALAFRMEYVFGFLRGGLRLMFPFLLGAAIAFILNVPMRFIEKNIL 67

Query: 57  E-----------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI- 104
                             ++A + V+ +  V  L +       +  L   V    ++   
Sbjct: 68  GGLLRMKETSRAKRPLSLLLAILFVLVIVAVVSLVVIPELTGTLLGLKRLVPAFFENMQI 127

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                 +  P  +                     T    N +      A         + 
Sbjct: 128 QAEAMFARYPEIVEFINSIEIDWKTLMEETASFITSGAGNLLSSTVTAAVSIASGLTTFS 187

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +S IF +  L           Q   +            + R+  ++      G    A+ 
Sbjct: 188 ISFIFSLYILLQKETLSRQFKQLCYAYFPESAVDKGLGVLRMTERIFSKFLTGQCTEAVI 247

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G +      +  +P  + +GV+ A  A+IP        AV I+L++  +   A    + 
Sbjct: 248 LGTMFFVTLTILRLPFALLIGVLIAFTALIPIFGAFIGCAVGIFLMLMVSPVQAIWFTII 307

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   I    + P +VG  + LP +     +  G   MG++G+ I   L ++   + KE
Sbjct: 308 FLVLQQIEGNLIYPHVVGSSVGLPSIWVLVAVSLGGSMMGIVGMLIFIPLCSVGYTLLKE 367

Query: 345 SI 346
            +
Sbjct: 368 DV 369


>gi|269962623|ref|ZP_06176969.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832660|gb|EEZ86773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 382

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 111/346 (32%), Gaps = 3/346 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               I   +   I++V  +    F   +L AL++    +P+      K   SS   A + 
Sbjct: 17  TTSLIRFSVTTLIVIVCWWAFLPFLPILLWALVLAIALYPVKLVIERKLGLSSARAATLI 76

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +   P   +      +                     +   P            
Sbjct: 77  AIIGVLILGTPTAMVGNSFASKTLGAFESYRDGTLVITKPADSVKTWPLVGEKVHAVWFE 136

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +      I            +    AS           +II   + L +      SI +
Sbjct: 137 AADDLPEFIEKRQPQIKGFFGWFVDTASGAAKSVFMLIGAIIIAGVMLAWAQPAAKSIRK 196

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S  +    A   ++  +    IR   +G+  IA    +  G+   L+GVP      +
Sbjct: 197 IFISFAD---EARGTELHELTTATIRQVAVGIIGIAFLTAMAFGAVVALSGVPGAALFTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I A++     +        L    +      +F    I   ++D  L+P ++G  + 
Sbjct: 254 IALIFAIVQLPVTLIALVTIGLLWSGDSGTIHNVIFTVLLIAASLIDNFLKPLILGRGLD 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P      G +GG+ + G+LG+FIG   +A    ++ + +    ++
Sbjct: 314 VPMPIVLIGAIGGMMSGGILGMFIGAAFLAAGYQVFMKWVDTETQD 359


>gi|283798148|ref|ZP_06347301.1| putative membrane protein [Clostridium sp. M62/1]
 gi|291074128|gb|EFE11492.1| putative membrane protein [Clostridium sp. M62/1]
          Length = 417

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 105/362 (29%), Gaps = 16/362 (4%)

Query: 1   MRETMLNPQGIMRWMIMFI----ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M++ ML     +  + +      +   L        P L    I F              
Sbjct: 8   MKKIMLLILYTIVILALAFRMEYVFGFLRGGLRLMFPFLLGAAIAFILNVPMRFIEKNIL 67

Query: 57  E-----------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI- 104
                             ++A + V+ +  V  L +       +  L   V    ++   
Sbjct: 68  GGLLRMKETSRAKRPLSLLLAILFVLVIVAVVSLVVIPELTGTLLGLKRLVPAFFENMQI 127

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                 +  P  +                     T    N +      A         + 
Sbjct: 128 QAEAMFARYPEIVEFINSIEIDWKTLMEETASFITSGAGNLLSSTVTAAVSIASGLTTFS 187

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +S IF +  L           Q   +            + R+  ++      G    A+ 
Sbjct: 188 ISFIFSLYILLQKETLSRQFKQLCYAYFPESAVDKGLGVLRMTERIFSKFLTGQCTEAVI 247

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G +      +  +P  + +GV+ A  A+IP        AV I+L++  +   A    + 
Sbjct: 248 LGTMFFVTLTILRLPFALLIGVLIAFTALIPIFGAFIGCAVGIFLMLMVSPVQAIWFTII 307

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   I    + P +VG  + LP +     +  G   MG++G+ I   L ++   + KE
Sbjct: 308 FLVLQQIEGNLIYPHVVGSSVGLPSIWVLVAVSLGGSMMGIVGMLIFIPLCSVGYTLLKE 367

Query: 345 SI 346
            +
Sbjct: 368 DV 369


>gi|54113873|gb|AAV29570.1| NT02FT1096 [synthetic construct]
          Length = 368

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 112/355 (31%), Gaps = 6/355 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L FL  + AP+L+AL+I +    + +      +     L  I 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFLGDYIAPILAALVIAYLLDTLVNILQKFTKLKRIVLVYIV 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +  +  L    + ++ + V +              LS     +   +     
Sbjct: 76  YILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRINSI 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S   S+       + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 136 VSWFDSI---DWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +  +   +   +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALY-YVWNDLKPKLADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP    +  T   I +  L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +  +     ++      GL G+F    L  L           +   K +   N
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADIN 366


>gi|291563789|emb|CBL42605.1| Predicted permease [butyrate-producing bacterium SS3/4]
          Length = 439

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 42/367 (11%), Positives = 103/367 (28%), Gaps = 41/367 (11%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-----------------------ISKK 55
            +   L  ++   APV+   ++ F   P+Y+                           + 
Sbjct: 35  AVFAFLGKVRFVLAPVIYGAVLAFLMSPVYNRCYNTVVYVHDDDKKKEDEEKKIAPKKRF 94

Query: 56  E-------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP- 107
           +              VI+   ++ + +     +       +  +++ + +  Q+      
Sbjct: 95  KSESFGNFLGKAIGTVISLAFLIVVVVSLSSMIIPQLYSSIVGIINMMPVYFQNVYDWLT 154

Query: 108 ----------RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
                     + + +I                  +L            +  +        
Sbjct: 155 EFFVNNPPVEQAILNIYEQSAQYFQSWMETDLMSNLSNFQNFQNIEKIVGGVSSGVMNVI 214

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
            +  +  + +I MI  L           + + S+             + + K      +G
Sbjct: 215 TLTKNMLIGLIVMIYLLNIKESLSAQGKKFIYSVLPLKAANIVVAEFQFIKKAFSGFIIG 274

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
             I ++  G++      L  +P  + + VI  +  +IP   P    A    L+   +   
Sbjct: 275 KLIDSLIIGILCFILMHLFKLPYELLISVIIGVTNVIPFFGPFIGAAPCAILVFLISPKQ 334

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
                    +        L P ++G    +      F ++      G +G+ I   LMA+
Sbjct: 335 CLYFIGLILVLQQFDGNILGPKILGNSTGVSSFGVLFSILLFGGLCGFVGMIIAVPLMAV 394

Query: 338 IAVIWKE 344
           I  I+ +
Sbjct: 395 IIHIYNQ 401


>gi|153814163|ref|ZP_01966831.1| hypothetical protein RUMTOR_00372 [Ruminococcus torques ATCC 27756]
 gi|317499961|ref|ZP_07958197.1| hypothetical protein HMPREF1026_00139 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087816|ref|ZP_08336741.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 3_1_46FAA]
 gi|145848559|gb|EDK25477.1| hypothetical protein RUMTOR_00372 [Ruminococcus torques ATCC 27756]
 gi|316898678|gb|EFV20713.1| hypothetical protein HMPREF1026_00139 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409511|gb|EGG88952.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 3_1_46FAA]
          Length = 384

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 102/333 (30%), Gaps = 2/333 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +         ++      GF  P +   II   + P+ +    +        + +  +
Sbjct: 13  RLLFSLAATAAFVIIGIKAIGFLMPFVIGWIISAVAAPLVNWLEKRLRIVKKLGSALIVI 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKH 126
            V+   +  L       +LE+  LV                + D   G++    E+    
Sbjct: 73  LVLGGIVGILYLGISRLILEVASLVRDFPSIYAQLESGLSQIGDTLSGVFDRLPEVVQNG 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +   S        + +   +     A         Y +S +  I++ +FF      +  
Sbjct: 133 WNTVASNLDQYMGKVVSGISEPTVSAAGNIAKRVPYYLVSFVVAIMSAYFFIVQREDVLA 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  +           +S  +   +   F     I     L+L +     G+   V +  
Sbjct: 193 WLKKVAPVSVQKRMTLVSDNLKYALGGYFKAQFKIMGVVFLILAAGLGFMGIGYFVLVAF 252

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + + +  +P     +              +  T   +   +   +V + L+P +VG  + 
Sbjct: 253 LISFLDFLPFFGTGTAMIPWAVYQFFMGDYKMTVSLVVLYVITQVVRQLLQPKMVGDSVG 312

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           L  L T   L  G +  GLL + +   +  ++ 
Sbjct: 313 LNPLVTLLLLYVGYKAGGLLWMILSVPVGMVLI 345


>gi|158319308|ref|YP_001511815.1| hypothetical protein Clos_0256 [Alkaliphilus oremlandii OhILAs]
 gi|158139507|gb|ABW17819.1| protein of unknown function UPF0118 [Alkaliphilus oremlandii
           OhILAs]
          Length = 400

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 108/344 (31%), Gaps = 15/344 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFIS-----------KKEESSTFLAVIATVSVMCLFI 75
           +      V+  + I +   P    F +            K+       +   + +  L  
Sbjct: 47  IGKVLNSVIIGISIAYILNPGVRWFETNVYNKSKKIKSIKKLPRALSIISVYLFLFSLIA 106

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIP----VPRWLSDIPGGMWASELWTKHLSHPQ 131
           + ++F+       + E+  +V       I     +    +             +++    
Sbjct: 107 MVIIFVVPQIGGNIIEISRRVPEYLNATIDFADELIEKWAKDLPSTSNLNNVGEYIEANI 166

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    +   +     + +           L++ + II     L           + L ++
Sbjct: 167 NTIFSNTKLVLDYIFNNLIMRVMNITSGILNFVMGIIISFYLLGDKESFKKGTERILRAV 226

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      + R    +     +G  I +   G++      +  +   + + VI  I 
Sbjct: 227 FSKKTVDRVVDLGREADTIFGKFVVGKFIDSFIIGVLCFIGLTILKIKYGLLISVIIGIT 286

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            MIP   P      ++ + +  +  NA  + ++  I        L P ++G  + +    
Sbjct: 287 NMIPYFGPFIGAVPAVLITLFDSPINAIWVMIFIFILQQFDGLYLGPKILGDSVGISPFW 346

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             F +V G    G+LG+F+G  ++A+I       I    E KE+
Sbjct: 347 IIFSIVLGGGLYGVLGMFLGVPVVAIITTFSNRLIDWQLERKEE 390


>gi|313681012|ref|YP_004058751.1| hypothetical protein Ocepr_2128 [Oceanithermus profundus DSM 14977]
 gi|313153727|gb|ADR37578.1| protein of unknown function UPF0118 [Oceanithermus profundus DSM
           14977]
          Length = 366

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 106/331 (32%), Gaps = 8/331 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            +   L A  + + + P+ S    ++     F  ++       +F+     L    ++++
Sbjct: 36  VWVGFLIAYTLAYLADPLVSGLERRRV-RRAFGVLLVYALFF-VFLGLASVLLAEVVVQL 93

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +L  ++    +        L  +      +      L H                +  +
Sbjct: 94  SQLSERIPEVLRPINGWIEGLPALVRRWAETPEVQAVLVHTADALKALLQGFSATLVKGL 153

Query: 150 PRFASRFGMIFLDYCLSIIF------MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                + G +                + +   +   D   ++  L       +     ++
Sbjct: 154 GALLGQGGNLVAGLAALAGGLVQLLAVFVVTGYLMVDFPRVNAALLEALPRPWQPLAVEL 213

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +  + + +     G  ++A   GL +G    L GVP   ALG I  +  ++P    +   
Sbjct: 214 AGRLDRAVGGYIRGQLLVAALVGLAVGLGLALIGVPMAAALGFIAGVFNLVPYLGVVVSI 273

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ L +    +    + +   I   +      P+++G    L  +     ++ G    
Sbjct: 274 VPALLLALTVAAWKVVGVLVVFLIANQLESHLFSPYILGRATALHPITVVLSILAGAGLF 333

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           GL G  +    +A   V++ +  +  + +++
Sbjct: 334 GLWGAMLAVPTVAFAKVLYTDYYLPSRCHEQ 364


>gi|2126791|pir||I39826 hypothetical protein cta locus ORF2 - Bacillus firmus
 gi|142791|gb|AAA22369.1| ORF2; putative [Bacillus firmus]
          Length = 385

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 109/334 (32%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
               + I   + + + LV+ YF+     P+++AL+      P  ++   K +       +
Sbjct: 37  FFTRRTIWIIISILLFLVAAYFILPVSLPLVAALLTALILTPAVNALQRKTKIKRNVAVM 96

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +    +   ++    + +  ++V                        + +    
Sbjct: 97  LVFTVFVVFIGLSGYYIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPE 156

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  ++               + +  +        Y ++ +  +IALF F  +   +
Sbjct: 157 LVQEINITVTNTLSDLRSNIRDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRL 216

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            ++L S            ++  +  VI   F    +++I   +V             + +
Sbjct: 217 REKLYSYLSERTKEKVNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPEVALLM 276

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             I  ++  +P    I   A      +     +     L  A  L I+ +T+ P ++G  
Sbjct: 277 AFIIWLIDFVPIIGSIVILAPWAIFQLIVGDVSTGSKLLILAAVLLIIRRTVEPKVMGKH 336

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           I L  L T   +  G+   G++G  IGP+L+   
Sbjct: 337 IGLSPLATLIAMYLGLMLFGVIGFIIGPLLVIAF 370


>gi|120611907|ref|YP_971585.1| hypothetical protein Aave_3249 [Acidovorax citrulli AAC00-1]
 gi|120590371|gb|ABM33811.1| protein of unknown function UPF0118 [Acidovorax citrulli AAC00-1]
          Length = 350

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 143/346 (41%), Gaps = 4/346 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+ T+L  +  +  +I  + L  L  L  F   V   +I+     P++   +      + 
Sbjct: 1   MKTTLLQNRTFIALLI-AVSLAFLAILWPFHGAVFWGVILAILFAPMHRRLLRLMPRRTN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+      + + I+P+  +    + E   +  ++             +       WA 
Sbjct: 60  LAALCTLTLCLLVVILPVTLITVSLVQEASLIYERIRSGQLDFTAYFHQVMAAMPS-WAM 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++  +      S      + +      F+   A  FG   L + +S   M+  LFF  RD
Sbjct: 119 QILDRLDLTTASELQARLSSVTVQATQFVGGKAIDFGQNTLQFVVSFGIMLYLLFFLLRD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +++ ++      L   + ++++     VIR+T  G   +A  +G + G A+W   + +
Sbjct: 179 GPALAARIREATP-LDEGHKRQLATKFTTVIRATVKGNIAVAAAQGALGGLAFWFLAIQA 237

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  GV+ A ++++P     + +  V++YLL  G ++    L  +G   + +VD  LRP 
Sbjct: 238 PVLWGVLMAFLSLLPAVGAGLIWAPVALYLLATGAVWQGVGLAAFGIGVIGLVDNVLRPV 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LVG   K+P        +GG+   GL G  IGPV+ AL    W   
Sbjct: 298 LVGKDTKMPDYVVLISTLGGMSLFGLTGFVIGPVIAALFIATWDLF 343


>gi|160885072|ref|ZP_02066075.1| hypothetical protein BACOVA_03070 [Bacteroides ovatus ATCC 8483]
 gi|156109422|gb|EDO11167.1| hypothetical protein BACOVA_03070 [Bacteroides ovatus ATCC 8483]
          Length = 374

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 112/344 (32%), Gaps = 12/344 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
           M++  IL+ +  L G   P   A +I +  +P+   F  K            +   +  +
Sbjct: 19  MLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + E+  +   +V    +G       +         +L   +    +  
Sbjct: 79  GVTLFYLLVPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D  +I++    L  
Sbjct: 139 ILAAIKDTVPRVWTLLAESLNILFSILASFIILLYVI-----FILLDYEAIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|94969196|ref|YP_591244.1| hypothetical protein Acid345_2169 [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551246|gb|ABF41170.1| protein of unknown function UPF0118 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 354

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 126/346 (36%), Gaps = 7/346 (2%)

Query: 5   MLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
               +  +R  +I  + L     LK F   +   +II    +P Y    +         A
Sbjct: 15  FRTREVAIRLSLIALLALTCFVILKAFIPLLAWGVIIATAGYPGYRKLAAALGGREKLAA 74

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+ T+ ++ L ++P + L        + + S+V   N    P P  +   P         
Sbjct: 75  VLCTLILLSLIVIPAVLLAGTLTDGARSIASQVQSGNFRIPPPPAKVQGWPLIGKPLNKV 134

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               S   +  +   + +       +    ++ G   L + LSI+     L     +   
Sbjct: 135 WTTASTDATQALNKVSPVIQKYAPTLLSAGAKLGGTLLQFILSIVLAGFLLASSRGNAE- 193

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                  +   +F     +   +    +RS   G+  +A+ + ++    + + G+P    
Sbjct: 194 ---FSQKIFRRIFREKGDEFETLTANTVRSVTNGIVGVALIQTILASLGFLVVGLPGAGM 250

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             ++   +A +     +       +     +   A    +W      ++D  L+P L+G 
Sbjct: 251 WSLL-FFVAAVLQVGVVVLLPAVAFAFTITSTTPAVIFLVWCMFV-GVIDNVLKPMLLGR 308

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             ++P L  F G++GG   MG +GLFIG +++++   ++   +  +
Sbjct: 309 GNQVPTLVVFLGVIGGFIAMGTIGLFIGAIILSVGYKLFLIWLEDV 354


>gi|152984980|ref|YP_001349742.1| hypothetical protein PSPA7_4390 [Pseudomonas aeruginosa PA7]
 gi|150960138|gb|ABR82163.1| membrane protein, putative [Pseudomonas aeruginosa PA7]
          Length = 357

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/359 (13%), Positives = 115/359 (32%), Gaps = 12/359 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +    G  APVL+A++I F    +      +      
Sbjct: 9   MQRYFSDEEAVVLAIMLVLGFSVILAFGGMLAPVLAAMVIAFLIQGVVGMLE-RFRMPHL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F   +     + L  + L+ L      ++  L +++         V   L +    + + 
Sbjct: 68  FAVWLVYSLFLGLLALFLVVLLPLLWQQLFTLFNELPRMLGEWQSVLLMLPERYPSLISE 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   K +   +                +    +     + ++  + ++ + I +FFF +D
Sbjct: 128 EQVLKAIEAARGEF--------GQIGQWALTSSLASLPVVVNIMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                               K++   + + I +   G  I  +  G V   A+   G+  
Sbjct: 180 KKRFYTWFRRYLPRE-RGLMKQVWAEMNQQIANYIRGKVIEIVITGAVTYIAFAYLGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  +  ++P    +  +     I     G       L +  AI   +    L P
Sbjct: 239 AALLALLVGLSVVVPYIGAVVVSVPVAMIAFFQWGWSDQFIYLMVAHAIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            L    + L  +     ++      G  G+F    L  L+  +       + E+    S
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLVKAVLDAWPKDLPESPAATS 357


>gi|110639302|ref|YP_679511.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110281983|gb|ABG60169.1| permease [Cytophaga hutchinsonii ATCC 33406]
          Length = 365

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 119/335 (35%), Gaps = 15/335 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + +F+    L+  +    P+  + ++     P+ +    KK        ++A +
Sbjct: 10  KLAVITIGLFVFFYVLFLGQEILVPLTFSWLLAILLNPVVNFLERKKINR-----IVAIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L IV    + ++   +    V  +         +                 +   +
Sbjct: 65  LAITLMIVVTAGILFFIGSQFSMFVDMLPQLKHKSTELAHK---------GLTWLSHTFN 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                        K   ++                  ++  + + +F F      + Q +
Sbjct: 116 ITTPKVNSWINEQKAKSMEGASGLLGTTLGTVSGVFFALFLLPVYIFLFLFYKPLLLQFI 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L           + +    +I++  +G+ I      ++   A  L G+P  + LGVI 
Sbjct: 176 AKLFSSDKHTVVADVLKETKSLIQNYLVGLMIEMCIVAVMNSVALMLIGIPYAILLGVIG 235

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           AI+ +IP    I   A+ + + L+     +A  +FL   +  F+ +  L P +V   +K+
Sbjct: 236 AILNLIPYIGGIVAIALPMIMGLMTDTPASALYVFLAYMLIQFVDNNFLVPKIVASKVKV 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +   ++ G    G+ G+F+   L+A++ VI+
Sbjct: 296 NAFISIIVVLIGGTLWGVAGMFLSIPLIAILKVIF 330


>gi|317049091|ref|YP_004116739.1| hypothetical protein Pat9b_2883 [Pantoea sp. At-9b]
 gi|316950708|gb|ADU70183.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 352

 Score =  117 bits (294), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 117/349 (33%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I    I+    + L+F  G  AP+L A+++ +           +   S T+
Sbjct: 10  RRRFSDPQAIGLVAILLAAFLILFFFSGLLAPLLVAVVLAYLLEWPTVRLE-RVGCSRTW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            + I  V    + +V +L +      +   L   +             L      +    
Sbjct: 69  ASSIVLVLFGGIVLVMVLIVAPVAWQQGINLTRDLPNMLNKLYLFAAGLPKRYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    + + +     T   + + +++    +  +   + ++ + + +FF  +D 
Sbjct: 125 ----VDAGIIDIVVENLRSRLTGLGESLVKYSLASLVGLMTLMIYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +           + + + + I +   G  +  +  G+V   A+ L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGVVWQEMNQQITNYIRGKVLEMVAVGVVSWLAFLLLGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   I   L   G   +   +F+   +   +    L P 
Sbjct: 240 LLLAVLVGVSVLIPYIGAMLVTIPVIGVGLFQWGLGSDFWTMFVVYLVVQGLDGNILVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  L     +V      G  G+F    L  LI  + +     
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVRAWPEE 348


>gi|254883331|ref|ZP_05256041.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643361|ref|ZP_07997987.1| permease [Bacteroides sp. 3_1_40A]
 gi|254836124|gb|EET16433.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384990|gb|EFV65943.1| permease [Bacteroides sp. 3_1_40A]
          Length = 378

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 113/351 (32%), Gaps = 11/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +GI+  M++  IL  +  L G   P   A +I + ++P+   F +K          ++  
Sbjct: 13  RGILTAMVIIGILYLVNRLSGVLLPFFIAWLIAYLTYPMVIFFQNKLRLRNRVISILVVL 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ +  +  + L    + E  +L   +      G         +   +       K  
Sbjct: 73  LVLLSIITLAFVGLVPPIIEEFGKLKELLTAYFIEGSKQAAIPGTVANFIKEHIDMLKIH 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +        +  +   +                +++  FF   D  +I++ 
Sbjct: 133 EALNESNFANTMRNVLPQVWALLTQSVNIVFSVFTSF----IILLYTFFILLDYEAIARG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L           I   V   +   F G   +A   G++    + +   P  +  G+ 
Sbjct: 189 WIKLIPARHREMTVHIVTDVQDGMNKYFRGQAFVAFCVGILFSIGFLIIDFPLAIGFGLF 248

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ M+P    I+F    +  L       +   +   C FL   I   I D  + P ++
Sbjct: 249 IGLLNMVPYLQLIAFIPTVLLALLKAADTGENFWWILFCAFLVFCIVQIIQDGLIVPKVM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G    L        L      MG++G+ I     +L+   ++  I   ++ 
Sbjct: 309 GKITGLNPAIILLSLSVWGALMGIVGMIIALPCTSLMLSYYQRYIRIKEKE 359


>gi|256751431|ref|ZP_05492309.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749650|gb|EEU62676.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 354

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 111/341 (32%), Gaps = 2/341 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKALLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L             +   L D     + +
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDIILNLVDRIRMYYVT 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +++ +      +     +  +   F     ++    +  ++A FF  +D
Sbjct: 126 LPPNITSLIENNMQSIL--NYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 184 KQLILDFIKRQIPSHWAQHAKNIQVDLLKTFFGYLRAVATIMLITFLEVSIGLAMIGFDY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG++  I+  +P     +         I    +      L     + +V + + P +
Sbjct: 244 PFLLGLLVTIVDALPVLGSGAVMVPWALYNIIMKNYMVGIYLLILYGLVVVVRQMIEPKI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           VG  I L  L T   +  G +  G LGL IGPV + +   +
Sbjct: 304 VGQSIGLHPLVTLLSMFIGAKLFGALGLIIGPVFVVVFKAL 344


>gi|91223164|ref|ZP_01258430.1| hypothetical protein V12G01_04956 [Vibrio alginolyticus 12G01]
 gi|91191977|gb|EAS78240.1| hypothetical protein V12G01_04956 [Vibrio alginolyticus 12G01]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 123/341 (36%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   +I  +++ +   +K F  PV+   II     P+               A  
Sbjct: 17  MVESAIRIGLIFVLLMFTYDIIKPFILPVIWGAIIAVALMPLTQKLQRVYGGRRGLAATT 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L + PL+ +    +      +  +             ++D P           
Sbjct: 77  IALLGIVLLVTPLVMVSGSIVDGATHALEVLQNGQVKIPGPKPSVADWPIVGDKLYEVWT 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +      I +       G               L   L  I  +     F     S +
Sbjct: 137 LFATNLEQAIQTFMPQIKAG----LTSLLGTLGGVLGSLLLSILSLAIAAGFMTYSESAA 192

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L ++         K  + ++   I+S  LG+  +A  + L++G+ +++ GVP+   L 
Sbjct: 193 SGLRTIAIRTAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFFVFGVPAAGLLT 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+ +    A ++   V  ++ +  +   AT   +W  +   + +   +P L+G  +
Sbjct: 253 LLLMILCIAQLPALLAVLPVIGFMYMTQDTSTATMFTVW-VVVAALSENLFKPMLMGRGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +P      G +GG+   G++GLF+G V++A+   ++   +
Sbjct: 312 DVPMPVILLGAIGGMLFYGIVGLFLGAVILAIWYELFVWWL 352


>gi|325846878|ref|ZP_08169735.1| putative ATP synthase F0, A subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481120|gb|EGC84164.1| putative ATP synthase F0, A subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 398

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/372 (13%), Positives = 122/372 (32%), Gaps = 23/372 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISK- 54
            N Q +   +I  ++  + +++K              P L   ++ F      + F  K 
Sbjct: 7   KNSQLLRVILISILVFFTFWYIKNVTNALTVFLAVIQPFLIGFMLAFIINLPMNFFEKKV 66

Query: 55  ----------KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
                     K+    F  + + +  +    + L  L       +  L+ +  +     +
Sbjct: 67  FSKVFKTEKTKKLIPVFSLITSWILFILGITIFLNVLIPRISSAVTTLIDRFPVFLNDFV 126

Query: 105 PVPRW--LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            +     ++          +++   +H              N  D      +      + 
Sbjct: 127 KLLNKNKITKRFADDVQKYIYSVDWNHKLIQVRDYFMGEAGNIFDKTTTIINSVSSTLVT 186

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
              S+IF +  L          ++ + S+ +        K++ +      S      + +
Sbjct: 187 VATSLIFSVFVLISKKDLKILANRVIYSIFKKETADEINKVASLSYSTFASYINSKALSS 246

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  GL++    ++  +P      ++ AI   IP   P+  T + + L+   + F +    
Sbjct: 247 LILGLLVLIGMFILKIPFAAMAAIMVAIADFIPYVGPLIATIIMMILIFIESPFQSLVFL 306

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  I   +    + P L G  I LP +     +  G    G++G+ +   + +++  + 
Sbjct: 307 IFLLIVQQVQGSIIYPALAGKTIGLPSIWIIVSIAIGGSLFGVVGMLVSIPIASILYTLM 366

Query: 343 KESIMAIKENKE 354
            E +    E KE
Sbjct: 367 NEKMDKKLEKKE 378


>gi|254448339|ref|ZP_05061800.1| integral membrane transport protein [gamma proteobacterium
           HTCC5015]
 gi|198261952|gb|EDY86236.1| integral membrane transport protein [gamma proteobacterium
           HTCC5015]
          Length = 360

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 91/335 (27%), Gaps = 22/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    + +I+ SL        P L A  I   + P+      +          +A +
Sbjct: 14  RLFLTAAALMVIIASLRAAADLLVPFLLATFIAVITTPVLRWLQRR-----GLPMWLAML 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+   +     +       + +    +           +    +               
Sbjct: 69  LVVVAMVGSFTLVGALVGSSITDFTRSLPQYKARLGGEMQSAFALLNSYGIETPTALLRE 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H                         +      +   +   +++ + F   +  S   +L
Sbjct: 129 HVN--------------PGAAMEMVGKVFNGLGNVLTNAFLIVLTVIFILAETHSFPNKL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S        +     ++    ++   +  T I++  GL      W  G+   +  G++ 
Sbjct: 175 KSAFTD--ADHHLVQFQLFSHTLQKYMVIKTSISLLTGLCATILTWAIGIDYPLLWGLLA 232

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       +   ++     A    +   +   ++   + P  +G  + L
Sbjct: 233 FLFNYIPNIGSIIAAVPAVLLAFVQLGGLPALGTAIGYVVINVVMGNMIEPRYMGKGLGL 292

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L  F  LV      G +G+ +   L   + +  
Sbjct: 293 STLVVFLSLVFWGWVFGPVGMLLSVPLTMFVKIAL 327


>gi|292670129|ref|ZP_06603555.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648228|gb|EFF66200.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 340

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 119/345 (34%), Gaps = 17/345 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+  +   I+L S +  +     +  +L++     P       + +   +  AV+A 
Sbjct: 7   RTSIILAIACAILLSSFWLFQDLAFIIFLSLLLHLLLKPAVDFMERRNK-PRSIAAVLAI 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + +  +  L    +  ++  V+++   +     +P     +        L  +  
Sbjct: 66  FLFVLVVVGIITLLSRSVVPSLQRFVTELPNISASIQQLPLLSDSVFVQNELLNLLDRL- 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +      R +  F        +  + +I   F+  +DG  I   
Sbjct: 125 ---------------RSLGSEALRASLSFLFGAFGKVIDFVIIIFVSFYLLKDGEEIKVW 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L      A   ++   +   +R+      ++    G+++ + + L G+P      ++
Sbjct: 170 LTDLFPDSARARIIRLFDNLLSALRTYICSQLVMCATTGVLVFAFFQLMGLPYASVFALL 229

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +AI   IP   P   +A+ I +        A   F++  I        + P L+G  + L
Sbjct: 230 SAISEFIPVLGPTIASALGIIMTASTVPELAIQTFIFYVILTQANHNIIYPALIGKSLHL 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +    G+V G   +G  G+F+    + ++ ++  +     KE 
Sbjct: 290 HPVAVILGVVFGGEILGPAGMFLAVPFIVILKIVISDIYRDRKEQ 334


>gi|221197812|ref|ZP_03570858.1| integral membrane transport protein [Burkholderia multivorans
           CGD2M]
 gi|221204630|ref|ZP_03577647.1| integral membrane transport protein [Burkholderia multivorans CGD2]
 gi|221175487|gb|EEE07917.1| integral membrane transport protein [Burkholderia multivorans CGD2]
 gi|221181744|gb|EEE14145.1| integral membrane transport protein [Burkholderia multivorans
           CGD2M]
          Length = 721

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 82/305 (26%), Gaps = 19/305 (6%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----------- 112
           +++ +  + L +  L    +    ++ EL S +             +             
Sbjct: 155 LVSVLVAVWLALSVLTAFGFLIGAQLAELASDLPRYQVAIERRVDNIQQTVVVHADAVLT 214

Query: 113 -----IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +       E  T                          + A  F    +    +I
Sbjct: 215 RTIDALKRVAPVREEHTSDTRPAGPADKAPLPVEVHEPSPSPLQLAQGFLSPVVSPLATI 274

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +I+   F       + ++L  L                 + +   FL    + +  G 
Sbjct: 275 GIVIVTAIFILLQRADLRERLIRLAGSHDMHRTTTAMSDAARRLSRYFLAQLCVNVCVGA 334

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           VL     + G+P  +  GVI  +M  +P          +  L    +   +  + +    
Sbjct: 335 VLSLGLAVIGLPGALLFGVIAGLMRFVPYVGVWIAALPATILAAAMSPGWSMIVAILVLF 394

Query: 288 ELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +      + L P + G    L  +      +      G +GL +   L  L  VI    
Sbjct: 395 SVTEVAAGQFLEPLVYGHSTGLSPIAVIVAAIFWSWLWGPVGLVLSTPL-TLCLVILGRY 453

Query: 346 IMAIK 350
           +  ++
Sbjct: 454 VSGLE 458


>gi|126464584|ref|YP_001045697.1| hypothetical protein Rsph17029_3845 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126106395|gb|ABN78925.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 406

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 15/322 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             YF +    P++  L++  T  P+  +              + T     + +   L   
Sbjct: 68  GFYFARDVVLPLMIGLLLALTFSPVVRALQRIGIAPPITATALITALAAVIAVSAFLLSG 127

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                        V         +   L +    +  S    ++ S   S    SE    
Sbjct: 128 P------------VSDWINQAPRLGDQLRERAQTILDSFEAVRNASEQVSEITDSEDPTV 175

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL-FPAYWK 201
                  P   S           +II  ++   F    G     +L              
Sbjct: 176 QRVAVQTPGILSSAVGSVASILTTIIVTLVLALFLLASGDLFYIKLIEGFPRFGDKKRAL 235

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I   + + +    L +TII  G G+V+G   W  G+PS +   +   ++  +P    I+
Sbjct: 236 RIVYGIERRVSRYLLSVTIINAGLGVVIGLLMWGTGMPSPLVWAMAAFLLNFLPYIGAIA 295

Query: 262 FTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             A+S  +      ++  A  +         I  + + P ++G  ++L  +  F  ++  
Sbjct: 296 GVALSAAVAIVHYDHLTQALLVPALYLTATAIEGQLVTPIVLGRRLELNTVSVFVTVIFW 355

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G+ G  +    +  I V+
Sbjct: 356 GWLWGIPGALVAVPFLVCIKVV 377


>gi|327190039|gb|EGE57156.1| hypothetical protein RHECNPAF_470031 [Rhizobium etli CNPAF512]
          Length = 400

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 124/335 (37%), Gaps = 5/335 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +I      +L  +  F   V+ + I+    +PI+ +            AV+  V  
Sbjct: 43  VRLGIIGLFAYWTLVLIAPFALIVIWSAILAVALFPIFEALSRLIGNRPVIAAVVIVVFS 102

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L I PL  +        + L+ K+   N      P  + + P            ++  
Sbjct: 103 LVLIIAPLALVAVNFADAAQALIGKLREGNFTLPAAPAAIREWPVVGERIHGAWNQIASD 162

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  I+            I    +  G   L + +SI+   I    F      ++  +  
Sbjct: 163 LAATIIKFQAPIREVTAVIVAKLASIGGGILSFVVSIVLSGI----FLTRSARLAAAIQI 218

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   +        +R+    +R+   G+  +A  + L+ G  + L  +P+   L  I  +
Sbjct: 219 LASRIAGEKGVGFARLAGTTVRNVSRGVIGVAFLQALLCGLCFALFDIPASGPLTFIVFV 278

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++  G  +    V I             +F   AI + I+D  L+P L+   +  P  
Sbjct: 279 LCLMQLGPALVLLPV-ILWAWFSWPTPIALVFTVVAIPIMIIDNILKPILMARGLSTPMP 337

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               G++GG  + GLLGLF+GPV++++   + +  
Sbjct: 338 VILIGVIGGTLSQGLLGLFLGPVVLSVFYELLRAW 372


>gi|37519773|ref|NP_923150.1| hypothetical protein glr0204 [Gloeobacter violaceus PCC 7421]
 gi|35210764|dbj|BAC88145.1| glr0204 [Gloeobacter violaceus PCC 7421]
          Length = 368

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 114/340 (33%), Gaps = 16/340 (4%)

Query: 8   PQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + ++ W+++     +    L + + F +  + A II F      +    +         
Sbjct: 8   QRTLLTWLLLVAAGWAALQVLEYFREFISVFVIAGIIAFLLSYPVALLSKRL--PRFAAV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++   S   +     + L      +  +L++ +    + G             +      
Sbjct: 66  LVVYSSAGVVVGTLAVALGPLVSQQTAQLIASLPDIIRSGSLQLEAFLKWARNLGLPVDV 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            + +             + +         +  F +      L+ I +++  F+   +G  
Sbjct: 126 DRLVGGFGLRLQEQLQVITSP-------QSVEFLLGTFTGVLNFILILVIAFYMLLEGEK 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + ++            + +  +     +R  F G  ++ +   L+L   Y    VP  + 
Sbjct: 179 LWREAIGFLPANIRLRFSESLQY---NLRGFFTGQLVLGLFMALLLTPTYLFLNVPFGLV 235

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L +    M +IP         + + + +  N++ A  +     +   I D  L P ++G 
Sbjct: 236 LALFVGTMELIPFIGATLGIGLVVIICLTQNLWLALWVLAASVLIQQIKDNVLAPRILGN 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              L  +  F  L+ G +  GLLG+ +   +  +I  +++
Sbjct: 296 FTGLSPVLIFGALLIGAKIAGLLGVLLAIPISGVIKSLYE 335


>gi|329944871|ref|ZP_08292898.1| hypothetical protein HMPREF9056_00781 [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328529682|gb|EGF56578.1| hypothetical protein HMPREF9056_00781 [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 437

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 98/336 (29%), Gaps = 20/336 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                   ++ I  V LY +K  FAP   AL +  T  P+ S             A  A 
Sbjct: 23  ETIAYLLAMLTIGAVGLYLIKDLFAPAFFALTLVVTVRPLVSWMTRH-HVPRVLAATTAI 81

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +    ++    L       +  L                            +  T+  
Sbjct: 82  LLIFTFVVLLFAALAVAVAQLVDTLPQYAPKFQA----------------IWRQAETQLN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   + +          +   A             +  M + + F   D   I  +
Sbjct: 126 GMGVDQSTVLKQVTNVLDTSRLVTVAQTILAQVTSASAMLSVMAMVVVFLMFDTAKIEIR 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L  ++             + +RS ++  T+  +   ++     W   VP  +  GV+
Sbjct: 186 TAAL--NVLKPGMASALVSFCEAVRSYWMVSTVFGLIVAVINVLTLWYLDVPMAITWGVV 243

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + I   IP    +        L L+    + A  + L   +  F++   ++P   G  + 
Sbjct: 244 SFITNYIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYVVANFVIQSLVQPKFTGDAVG 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    TF  L+     +G LG  +   L   +  + 
Sbjct: 304 LNTTTTFLCLLFWSTVIGALGTILAVPLTLFVKALL 339


>gi|289578242|ref|YP_003476869.1| hypothetical protein Thit_1040 [Thermoanaerobacter italicus Ab9]
 gi|289527955|gb|ADD02307.1| protein of unknown function UPF0118 [Thermoanaerobacter italicus
           Ab9]
          Length = 339

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/332 (14%), Positives = 121/332 (36%), Gaps = 16/332 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKG------FFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +  + ++I+  I +  +F+K         +P   A ++ +   P+   F SK   S
Sbjct: 1   MQVKKIYLFFLIIAAIGLLYFFIKNWVSIKNILSPFFIAGLVAYLLNPMVKFFNSK-GLS 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           + F  ++  + V    ++   ++F   + EM   ++ +    +    +   L        
Sbjct: 60  TFFSILLVFLIVTLGILIFSFYIFPLMINEMIAFITMIPFYIEELQNILIQLKFNYFSYL 119

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +       +  +L  L  + +       +           L   +  I + I  F+F 
Sbjct: 120 PPQFEKVLDKNLNTLNNLFASRVDMAFKSTVA---------ILKNVIDAILVPIITFYFL 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     ++++ +    +   +  + R + K++         ++I  G++      L  +
Sbjct: 171 KDKNLFKKEIEKIIPSKYHCSFFTLLRKIDKILSKYIRAQIYLSIFVGILTSIGLSLIKI 230

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +G++T ++ +IP   PI     ++ L    ++       +   +   I +  + P
Sbjct: 231 KYAFLVGLLTGVLNIIPYIGPILSIIPAVLLGFLDSLSKGIWALVVCLLVQQIENAFITP 290

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            ++   + L  +   F L+ G  T   LG FI
Sbjct: 291 KILSDSVGLHPITVIFSLIAGGGTFWHLGAFI 322


>gi|17547343|ref|NP_520745.1| ABC transporter permease [Ralstonia solanacearum GMI1000]
 gi|17429646|emb|CAD16331.1| probable permease transmembrane transport protein [Ralstonia
           solanacearum GMI1000]
          Length = 356

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 104/340 (30%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +    L  L  L     P + A I+ +   P        +         + 
Sbjct: 10  TKRTLAWIAVAVAFLALLKLLAPTLTPFVFAGILSYILHPGVEWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  + +  +L +      E+  +  ++                 P            
Sbjct: 69  ILLLTVVAVALMLLILAVLQREIPAIREQLPGMLSKLNAAV-----TPRLAEMGVHVRFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + L          + +     +    G   +     +  + I +F+   D   + +
Sbjct: 124 FPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNMLIR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +L+      + +  ++++     ++     G  I+ +       +   LAG    + +G+
Sbjct: 184 RLEGAVPRRWISKTRELAAETDGLLSQYLRGQIIVMLVLAAYYSAGLALAGFDVALPIGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I       GN++    + +   +   +    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGIGLILAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQ 343


>gi|294792910|ref|ZP_06758056.1| putative membrane protein [Veillonella sp. 6_1_27]
 gi|294455855|gb|EFG24219.1| putative membrane protein [Veillonella sp. 6_1_27]
          Length = 373

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 111/345 (32%), Gaps = 13/345 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVS 69
           I   L  +   F P++    I F    +   +                      +++ V+
Sbjct: 30  IASGLDAIFTAFVPLIVGACIAFVLDILVVRYERWLWPKCDSGWKYKIRRPLSLLLSFVT 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +            +  M  +V+              W+  I   +  +   T   + 
Sbjct: 90  ISVIVYFIARMALPQLIHSMSIIVAASPQLYTDFQT---WMQHITETIPMASNQTIIDAL 146

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                        T G  +I           L+  L +IF +  L    R      + L 
Sbjct: 147 SGENIAKYTREWGTKGGTYIVNAMGTVLSWTLNIGLGLIFAVYMLLDKERLMLQGKRILK 206

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +     + +    ++R+  +   + F+G  I A+  G+++G   WL  +     +  +  
Sbjct: 207 AYASDEWVSRVSYVTRVAVQTFSNFFVGQFIDALVLGVMVGITLWLFNIEYATTIACVIG 266

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP         +   +L+  +  +A    +   I   I    + P +VG  + LP 
Sbjct: 267 LTGLIPLLGIYVGGIIGAVMLLTVSPMDALIYVIILEILHQIESNFIYPKIVGNSVGLPG 326

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L  F  ++ G   MG+ G+ IG  L+A    +    +     + E
Sbjct: 327 LWVFAAVIVGGSLMGVTGMLIGVPLVATCYKLIMTDVDGRLASNE 371


>gi|293376684|ref|ZP_06622910.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|292644702|gb|EFF62786.1| putative membrane protein [Turicibacter sanguinis PC909]
          Length = 385

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 107/336 (31%), Gaps = 12/336 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVP 77
           +   F P +   II +    I   +  +  +               +++ ++   +F V 
Sbjct: 43  IMAVFQPFIIGFIIAYLINFILKFYEDRVFKKFIKGSKKSLRGVAVILSYLTASLIFYVF 102

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           + F+    +  +  LV+ +         +             S  +   ++   +     
Sbjct: 103 IQFVVPQLVESITGLVNDIPRYLYDMKVILE---QTLNETDISPEYMTLINDKLTEITNW 159

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L TN +  I      F     +  L II  +  L    +      + + +L      
Sbjct: 160 VLQLVTNLLPIIGGIVMAFASSVWNIILGIIISVYLLVDKEKFFALGKKVVVALFNDKHA 219

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                ++            G  I +   G++      +  +P  + + VI  +  +IP  
Sbjct: 220 NIILNLANRTNLTFGKFIGGKIIDSAIIGVLTFIILTIFKMPYSLLISVIIGMTNIIPFF 279

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      S  +++  +   A    +   +   I    + P ++G  I +      F ++
Sbjct: 280 GPFIGAIPSAIIILFISPIKAVWFGIIILVIQQIDGNIIGPKILGDSIGISAFWILFAIL 339

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              +  GL+G+ IG  + ALI  I K+ I      K
Sbjct: 340 VAGKLFGLVGMIIGVPMFALIYSIVKDVIEIRLSKK 375


>gi|91212964|ref|YP_542950.1| hypothetical protein UTI89_C3990 [Escherichia coli UTI89]
 gi|237703221|ref|ZP_04533702.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|91074538|gb|ABE09419.1| hypothetical protein YhhT [Escherichia coli UTI89]
 gi|226902485|gb|EEH88744.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|315286115|gb|EFU45553.1| conserved hypothetical protein [Escherichia coli MS 110-3]
          Length = 376

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPRFNKELTRKLFKLQEMLPFLNLHMSPERILQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|237733563|ref|ZP_04564044.1| permease [Mollicutes bacterium D7]
 gi|229383396|gb|EEO33487.1| permease [Coprobacillus sp. D7]
          Length = 396

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 107/360 (29%), Gaps = 14/360 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS-----------KKEESS 59
           I   M +  I   +  L G    +   +II +                         +  
Sbjct: 28  IYLLMNLGNIYGMISTLLGTLVYLFYGIIIAYILNQPMKLIEKQITKYCTKTSFLYRKKR 87

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               +   +  +CL ++    +    +  +  L+S               +       + 
Sbjct: 88  GLSIIATLILFICLIVLIASIVIPNLISSLISLISNTSAFLTSVFNNIDDIFIYFNIDFR 147

Query: 120 SELWTK---HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            E        ++ P    +     + T     I   A+ F   F       IF +  L  
Sbjct: 148 MENIASVKDLINMPWQDMVGQALDILTRSAGGIMNNATNFLSTFGVVFTGFIFSLYLLGN 207

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  + + + +L  +         +    +V  +   G  + A    ++      L 
Sbjct: 208 KETFLRQLRKAIGALCGYKVTCVIFDYAHKTNEVFSNFISGQLVEACILWVLYYVTMKLF 267

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             P    +  I +I + +P   PI+   V   L++  +   A    ++  I   + D  +
Sbjct: 268 NFPYPELIATIISIFSFVPFFGPIAAMFVGAVLILSKDALMAIWFMVYFQILSQLEDNFI 327

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            P +VG  + LP +     +       G+ G+ I     A +  +  E I  I + ++ +
Sbjct: 328 YPRVVGNSVGLPGIWVLLSIFVFGDLFGVFGMVIAVPSAACLYSLASEVINMILKKRKLV 387


>gi|312881082|ref|ZP_07740882.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
 gi|310784373|gb|EFQ24771.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
          Length = 370

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 67/332 (20%), Positives = 125/332 (37%), Gaps = 4/332 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYY 84
             +    P+    +  F + P++++   +         A +  ++ +C  + P+ +L  +
Sbjct: 35  VTRPLVRPLAWGAVAAFLTHPLFAALNRRTRGHCPGLCATLTLLAALCFVLAPVSYLVTF 94

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   LV+ +   N         L          E     L     L           
Sbjct: 95  LGQETSALVAAIARFNAQIQGGTPELWFSKLPPRIQETLGPLLQDR-RLWGELVQKAGLW 153

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +   +S        +       +++ FF  RDG S+   L S    L     +   
Sbjct: 154 VGGLVAAGSSGLLQGTATFLYEASLALVSTFFLVRDGASMVAYLGSALP-LPGEQKRAFL 212

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFT 263
                ++RS   G+ +    + ++ G  +W+AG+P+ V  G +  +  M+P     + + 
Sbjct: 213 ERSRDLLRSVLFGVLLTVALQAVLGGLGWWVAGLPNPVFSGFLMFLFGMVPLVGTALIWV 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              +YLLI G+I     L LWGA+ +  VD+ LRP  + G    P      G++GG+   
Sbjct: 273 PGGVYLLIAGHIKAGVLLLLWGALVVGSVDQFLRPLFISGRGGAPTFLVLLGILGGLSAW 332

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G LG+F+GP+ +AL  V++             
Sbjct: 333 GFLGIFLGPLALALFLVVFDTYRRQWATEDAP 364


>gi|253564021|ref|ZP_04841478.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251947797|gb|EES88079.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|301161674|emb|CBW21214.1| putative transmembrane protein [Bacteroides fragilis 638R]
          Length = 379

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 117/344 (34%), Gaps = 10/344 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            ++  +L+    L G   P   A +I +  +P+   F  K    S  +++   +  + + 
Sbjct: 19  ALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLRFKSRIISIFCALFSITIV 78

Query: 75  IV-PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + EM  +   +V    +G      +           +  + L+   S 
Sbjct: 79  GISLFYLLVPPMLAEMGRMNDLLVTYLTNGTYSSGTVPPTLSEFIHKHIDLQALNRILSE 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           + +  T  +T    +     S   +  L    +   +++ + F   D  SI++    L  
Sbjct: 139 ENIMNTIKETVPKLWALVAES---INILFSVFASFIILLYVVFILLDYESIAEGWLHLLP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +  +   +   +   +   F G   +A   G++    + +   P  +ALG+    + M
Sbjct: 196 GKYRTFASNLVNDIQDGMNRYFRGQAFVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 255

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +          +   +   I D  L P ++G    L
Sbjct: 256 VPYLQIIGFLPTIVLAILKAADTGENFWVILAGALIVFIVVQAIQDGFLVPRIMGKITGL 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      +G+LG+ I   L  L+   ++  I+  ++
Sbjct: 316 NPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFIINKEK 359


>gi|240949621|ref|ZP_04753956.1| putative permease perM-like protein [Actinobacillus minor NM305]
 gi|240295879|gb|EER46555.1| putative permease perM-like protein [Actinobacillus minor NM305]
          Length = 350

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 99/346 (28%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   +PQ +    I+      +YF  G   P+L A+++ +           K        
Sbjct: 11  QKFNDPQTVALLGILLFGFGIIYFFSGLIMPLLVAIVLAYLLESPIRFLTEKLHFPRLLS 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++     + +    L+ +      +    +  +           + L +    +    +
Sbjct: 71  VLLVFGGTVSIVAFLLVVMVPSLWNQAVNFIRDLPNMFNLLNEWVQALPEHYPELVDYAM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S  ++  +     L    ++ I               +    + + +FF  +D  
Sbjct: 131 LDGMMSSLKTKILGYGESLLAISVNSIISLV--------GLGIYAFLVPLMVFFLLKDKP 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +    +          ++   +   I +   G  +  +   +V         +   +
Sbjct: 183 IFLRSFIKMMP-KNRRLATRVWIEMQGQIANYIRGKFLEILIVSVVTYIILIFFDLRYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  ++P    +  T       L   G   +   L L   I   +    + PFL
Sbjct: 242 LLSVVVGLSVLVPYIGAVIVTIPVALIALFQFGLSPDFYYLLLAFVISQLLDGNLVVPFL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  L     ++      G  G+F    L  L+  +     
Sbjct: 302 FSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALP 347


>gi|268592592|ref|ZP_06126813.1| putative membrane protein [Providencia rettgeri DSM 1131]
 gi|291312006|gb|EFE52459.1| putative membrane protein [Providencia rettgeri DSM 1131]
          Length = 371

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 68/359 (18%), Positives = 142/359 (39%), Gaps = 7/359 (1%)

Query: 2   RETMLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++ +  P+ I   + I+ +I    + L  F    + A ++   +WP+     ++      
Sbjct: 5   QKRLDLPKLIFGLLSIVLMIAACFWVLNPFILGFVWAGMMVIATWPLLLRLEARLWHKRW 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWA 119
              ++  + ++ LF++PL  L    +     L+      +   +P   WL+ IP  G   
Sbjct: 65  LATLVMVLLILLLFVIPLGILIGSIIENSTPLIDLAKSPSSLTLPDLEWLNTIPMVGEKI 124

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              W   ++   +  +            +    A   G     +   ++ M++     Y 
Sbjct: 125 YYAWHSLVASGGNALLAKIQPYFGQAAGWFATQAISAGR----FVFHLMLMLLFSGLLYL 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G S+   +      L          +  + IR+  LG+ + A+ + +V G    L+G+ 
Sbjct: 181 KGESVMVSIRHFAVRLAGIRGDAAVVLAAQSIRAVALGVVVTALIQAIVGGIGLALSGIG 240

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L V+  I  +   G  +      I+L   G+      L +W A+   +    LRP+
Sbjct: 241 YAAILTVLLFICCVAQLGPLLIMVPSVIWLFWTGDTTWGIILAIWAAVVATMDG-VLRPW 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     LP +    G++GG+ + G++GLFIGPV++A+   + K  +  +    E ++ 
Sbjct: 300 LIKMGADLPMVLILVGVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAVPSEDLTE 358


>gi|328883612|emb|CCA56851.1| putative integral membrane protein [Streptomyces venezuelae ATCC
           10712]
          Length = 352

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/345 (13%), Positives = 106/345 (30%), Gaps = 19/345 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   +  + +      +    PVL A++      P++   + +    ++  A +  V+V
Sbjct: 23  LLAAGVAAVGIWLCAVFRTAVTPVLLAILGTALLGPLHRRLV-RLGVRTSLAAALTVVAV 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +       +    +    ++V+ +  A                               
Sbjct: 82  LAVVGGATYIVVAALIETGDQIVASLRQAATDIAEHL-----------------GAAGTS 124

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 +   L                 +  +   + +  ++ +FFF RD    +  L S
Sbjct: 125 LDDLAKNAKSLLEKFGGTAASGVISGISVVGEMLATAVLALLLMFFFLRDSDRAAGALRS 184

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L         + ++R   + +     G T++A+ + +++G    +  VP  V L  +  +
Sbjct: 185 LVPRTTGDLVEAMARRAFEAVEGFMRGTTLVALVDAVLIGVGLVVLDVPGAVGLAALVFV 244

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP     +S     +  L       A  +         I    L+P +    +++  
Sbjct: 245 TAYIPYLGAFLSGAIAVLVALADRGFVIALWVLGIVLAVQVIEGNVLQPMVQSRTVQMHP 304

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 +  G    G+LG+ +   L A    +  E         E
Sbjct: 305 AAVMLAITAGASVAGVLGMLLAVPLTAAATGVLGELRTRYGARPE 349


>gi|289807066|ref|ZP_06537695.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 355

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/349 (18%), Positives = 130/349 (37%), Gaps = 5/349 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +   +  +I+  L+ ++ F      A  I   +WP+            +   ++ T+ 
Sbjct: 1   AAIGAFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLL 60

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ LF++P+  L    +     L+  V   +     +    +    G      W   L  
Sbjct: 61  LVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDM 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S  +            +    A+  G     + +    M++     Y  G  ++  + 
Sbjct: 121 GGSAIMAKVRPYIGTTTIWFVGQAAHIGR----FMMHCALMLLFSALLYWRGEQVAMGIR 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L          +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  
Sbjct: 177 HFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMI 236

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  ++  G         I+L   G+    T L +W A+   + D  +RP L+     LP 
Sbjct: 237 LSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVLIRMGADLPL 295

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 296 LLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 344


>gi|307826374|ref|ZP_07656577.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
 gi|307732582|gb|EFO03456.1| protein of unknown function UPF0118 [Methylobacter tundripaludum
           SV96]
          Length = 350

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 130/331 (39%), Gaps = 3/331 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K F      A+I+     P+Y       + S      +  + ++ +F++PLL + 
Sbjct: 21  FFLLIKDFLLACFWAIILAVVFDPVYQRIRQYFKNSEILPLFLTMMMIILVFVIPLLTII 80

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E      K+     +     + +  +    +      + +S        S     
Sbjct: 81  LMITEESTGYYQKIASGEINPQVYFQDILALVLPKFYKLSHIQAISV--EQISASAGNAF 138

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T  + +I +         L+  + +      LFF  RDG  + ++L SL          +
Sbjct: 139 TQAVKYIAQQLPALTQNLLNLIVQVALAFYILFFLLRDGQQLIRKLISLIPIGDG-IEIE 197

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +      V R+T  G  I+A+ +G + G  +W  G+P+    G++  +++++P G+ + +
Sbjct: 198 LFERFTSVARATVKGGLIVAVIQGSIGGFLFWFVGIPAAFLWGILMIVLSLLPIGSTLIW 257

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I L ++G    A  +   G + + ++D  LRP L+G   K+         +GG+  
Sbjct: 258 VPAAIILFLQGQTLKAAIVLAIGILVIGMIDNFLRPRLIGKDSKMSDYLVLVSTLGGLTW 317

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L G  +GP++ AL    W       + +K
Sbjct: 318 FSLTGFVLGPIIAALFITCWDLMGQESQASK 348


>gi|212634763|ref|YP_002311288.1| hypothetical protein swp_1944 [Shewanella piezotolerans WP3]
 gi|212556247|gb|ACJ28701.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 360

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 106/336 (31%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + ++ I     P+ +     K         +A +
Sbjct: 12  KGFAISAFIVVILAGIKTASPIVVPFVLSVFIAVICNPVINWLTRHKAPR-----GLAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       I    W+ D    +       + L+
Sbjct: 67  MLMVFIVLMGLWLASLVGTSINEFSKQLPFYRDQLIEQFSWIVDKLAALNIQISKEQILA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T     G+  +        +  +            +     D     +Q+
Sbjct: 127 YFDPGIALSMTTNMLTGVGSVMANLFLIILTVVFMLFESNGFSRKMHLALDDPDMRLKQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                     +    +  T++++G G ++G   ++ GV   +  GVI 
Sbjct: 187 DRFL----------------HSVNQYMVIKTLVSLGTGFIVGLGLYIIGVDYALLWGVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     S+ L         A  + L       I+   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVLLAFIQIGPGAAGAVALLYLGTNTIMGNVVEPRYMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 326


>gi|325845516|ref|ZP_08168806.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|325488470|gb|EGC90889.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 385

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 107/336 (31%), Gaps = 12/336 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCLFIVP 77
           +   F P +   II +    I   +  +  +               +++ ++   +F V 
Sbjct: 43  IMAVFQPFIIGFIIAYLINFILKFYEDRVFKKFIKGSKKSLRGVAVILSYLTASLIFYVF 102

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           + F+    +  +  LV+ +         +             S  +   ++   +     
Sbjct: 103 IQFVVPQLVESITGLVNDIPRYLYDMKVILE---QTLNETDISPEYMTLINDKLTEITNW 159

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L TN +  I      F     +  L II  +  L    +      + + +L      
Sbjct: 160 VLQLVTNLLPIIGGIVMAFASSVWNIILGIIISVYLLVDKEKFFALGKKVVVALFNDKHA 219

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                ++            G  I +   G++      +  +P  + + VI  I  +IP  
Sbjct: 220 NIILNLANRTNLTFGKFIGGKIIDSAIIGVLTFIILTIFKMPYSLLISVIIGITNIIPFF 279

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      S  +++  +   A    +   +   I    + P ++G  I +      F ++
Sbjct: 280 GPFIGAIPSAIIILFISPIKAVWFGVIILVIQQIDGNIIGPKILGDSIGISAFWILFAIL 339

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              +  GL+G+ IG  + ALI  I K+ I      K
Sbjct: 340 VAGKLFGLVGMIIGVPMFALIYSIVKDVIEIRLSKK 375


>gi|315650632|ref|ZP_07903691.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
 gi|315487107|gb|EFU77430.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986]
          Length = 411

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 36/337 (10%), Positives = 106/337 (31%), Gaps = 17/337 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------------EESSTFLAV 64
           I V++  +    + V   +++ F + P+Y     +                + +     +
Sbjct: 35  IAVTIKAIVSTVSSVFYGVVMAFLTAPVYDKISDRLAKIFSSLFPKWKKPIKLAKFIATL 94

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASEL 122
              V ++ +    ++ +    +  +  +++             + + +    +       
Sbjct: 95  ACLVILIFVIFALIMMIIPELVNSISNVINYAPNGMLKLEDWLKDILNKNPDLEKLVIGN 154

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +             +        I  +         + ++  + ++ M+  L        
Sbjct: 155 YQDISDRLSDFATTNVLPNVNTYIKNLSSGVLNALGVIVNIIIGMMVMMYLLNMKTTLAS 214

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              + + ++            +R +  +     +G  I +I  G++      +  +P  +
Sbjct: 215 QAKKIVYAIAGVKIGNEIVTEARYIKDMFEKFIVGKIIDSIIIGIINYIFMAVIHMPYAL 274

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + V+  +  +IP   P      SI LL+  +   A    +W  +   +    + P ++G
Sbjct: 275 LISVVVGVTNVIPFFGPFIGAIPSIVLLLLISPLTALQFAVWILVLQQVDGNIIGPKILG 334

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               LP     F ++      G++G+ I     A+I 
Sbjct: 335 QTTGLPSFWVLFSILLFGGLFGIVGMIIAVPTWAIIY 371


>gi|326390153|ref|ZP_08211714.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325993801|gb|EGD52232.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 341

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 124/350 (35%), Gaps = 16/350 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKG------FFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M   +  + ++I+  I +  +F+K         +P   + +I +   P+   F SK   S
Sbjct: 1   MQVKKVYLLFLIIGAIGLLYFFIKNWVSIKNILSPFFVSALIAYLLNPMVKFFNSK-GFS 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
           +    ++  + V  + +    ++    + E+   V  +    +    +   L        
Sbjct: 60  TFLSILLVFLIVALVILFFSFYILPLLINEIVIFVKMIPFYTKELQKILIQLKFNYFSYL 119

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             +       +  +L  L  + +       +           L   + +I + I  F+  
Sbjct: 120 PPQFEKVLDKNLNALNNLFASRVDLVFKSTVA---------ILKDIIDVIIVPIITFYLL 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D     ++++ +    +   +  + + + K++         ++I   +       L  V
Sbjct: 171 KDKNVFEKEIERMIPSKYHDSFFALLKKIDKILSKYIRAQIYLSIFVAIFTSIGLSLIKV 230

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +G++  I+ +IP   PI     ++ + +  ++       L   +   I +  + P
Sbjct: 231 KYAFLIGILAGILNIIPYIGPILSIIPAVLIGLLDSLSKGFWALLVCLLVQQIENAFITP 290

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            ++   + L  +   F L+ G    G+ GL +   ++A+  VI  E  + 
Sbjct: 291 KIISDSVGLHPITVIFSLIAGEELFGVWGLLLSVPVVAIGKVIVTEIFIE 340


>gi|312869471|ref|ZP_07729627.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
 gi|311094979|gb|EFQ53267.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
          Length = 371

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 108/337 (32%), Gaps = 10/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----KKEESSTFLAVIATVSVMCL 73
           FI    L F+   F P++ +  + +   PI    +     +   +    +++  + ++ +
Sbjct: 30  FIFQPFLTFISVVFVPLILSGFLYYMLNPILKLLLKVRLGRFRLNRGVASLLLVLMLILI 89

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L  L    + E+  LV+ +         +          +  S L    L+     
Sbjct: 90  ICGGLAMLIPPVVKEITSLVTHLPQTASGLQRLLN------DTIQHSPLKNIDLTAYYRQ 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  +            +  +  I + + LF+  +DG  +   +     
Sbjct: 144 FDHQLANYAQVVLKGLSSRIGDVINAVTNITVVTITVPVMLFYMLKDGSKLGPSIQKWLS 203

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +   + S   G  I  +   +     Y L   P  + LG++  +  +
Sbjct: 204 PHHAKEVDQLLGKMNDTLSSYIAGQVIECLFVAVFTSLGYLLIHQPLALVLGIVAGLCNI 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++++ +         + +   +   I    + P ++G  +++  L   
Sbjct: 264 IPYIGPYIGIAPALFVSLTMAPQKLILVIIVVIVVQQIDGNVIYPNIIGKTLQIHPLTII 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+      G+ G+ +     A++  I +      +
Sbjct: 324 LLLLAAGHIAGIAGMILCIPFYAVLKTIAEYFFDIYR 360


>gi|89100377|ref|ZP_01173241.1| hypothetical protein B14911_07438 [Bacillus sp. NRRL B-14911]
 gi|89084896|gb|EAR64033.1| hypothetical protein B14911_07438 [Bacillus sp. NRRL B-14911]
          Length = 375

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 114/350 (32%), Gaps = 10/350 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    + ++L  L+++     P +    I F   P+ +  + K         +I+ +
Sbjct: 11  RFIVVIGAVLLLLAGLFYVSKVTYPFIIGFAIAFLMNPLVNFLVRKGRMPRALAVLISLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +   F   +  L    +     L   V    +  I               ++L +   S
Sbjct: 71  LIFAFFAGLITLLIAEIVSGADYLAQVVPNHLETLITYAEDFFAGQLIPLYNQLTSMFNS 130

Query: 129 HPQSLKILSETFLKT----------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                K      ++           + I             F +    +IF ++A FF  
Sbjct: 131 LDTGQKDTILANIQNVGSRFGATAGSFIQSFFEKIPNILSWFPNAATVVIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D + +S   + L      A    +   + K +         +     +++     +  V
Sbjct: 191 KDWYRLSILGNRLLPEKAKASSATVFTDLKKALFGFVKAQATLVSITAIIILIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + ++T I+ +IP           I         +         + + +  + + P
Sbjct: 251 DYAITIALVTGIVDIIPYLGTGLIFVPWIIYEAIAGEMSTAVGLGVLYVIVLVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            ++   I +  L T   L  G +T+G LGL  GPV++ +I  + K  +  
Sbjct: 311 KVLSSSIGMDPLATLVALFVGFKTIGFLGLIAGPVVLVIITTLHKAGVFR 360


>gi|15608241|ref|NP_215617.1| hypothetical protein Rv1101c [Mycobacterium tuberculosis H37Rv]
 gi|15840540|ref|NP_335577.1| hypothetical protein MT1133 [Mycobacterium tuberculosis CDC1551]
 gi|148660887|ref|YP_001282410.1| hypothetical protein MRA_1112 [Mycobacterium tuberculosis H37Ra]
 gi|148822313|ref|YP_001287067.1| hypothetical protein TBFG_11122 [Mycobacterium tuberculosis F11]
 gi|167969235|ref|ZP_02551512.1| hypothetical protein MtubH3_14895 [Mycobacterium tuberculosis
           H37Ra]
 gi|215402931|ref|ZP_03415112.1| hypothetical protein Mtub0_04401 [Mycobacterium tuberculosis
           02_1987]
 gi|215410721|ref|ZP_03419529.1| hypothetical protein Mtub9_05210 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426395|ref|ZP_03424314.1| hypothetical protein MtubT9_08412 [Mycobacterium tuberculosis T92]
 gi|215429975|ref|ZP_03427894.1| hypothetical protein MtubE_04673 [Mycobacterium tuberculosis
           EAS054]
 gi|215445267|ref|ZP_03432019.1| hypothetical protein MtubT_04733 [Mycobacterium tuberculosis T85]
 gi|218752788|ref|ZP_03531584.1| hypothetical protein MtubG1_04765 [Mycobacterium tuberculosis GM
           1503]
 gi|219556985|ref|ZP_03536061.1| hypothetical protein MtubT1_06650 [Mycobacterium tuberculosis T17]
 gi|253799860|ref|YP_003032861.1| hypothetical protein TBMG_02883 [Mycobacterium tuberculosis KZN
           1435]
 gi|254231381|ref|ZP_04924708.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|254364007|ref|ZP_04980053.1| conserved membrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254550098|ref|ZP_05140545.1| hypothetical protein Mtube_06519 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260200141|ref|ZP_05767632.1| hypothetical protein MtubT4_08443 [Mycobacterium tuberculosis T46]
 gi|289442532|ref|ZP_06432276.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289555113|ref|ZP_06444323.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289569093|ref|ZP_06449320.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289744845|ref|ZP_06504223.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289749636|ref|ZP_06509014.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289753166|ref|ZP_06512544.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289757189|ref|ZP_06516567.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289761240|ref|ZP_06520618.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|294993282|ref|ZP_06798973.1| hypothetical protein Mtub2_01932 [Mycobacterium tuberculosis 210]
 gi|297633640|ref|ZP_06951420.1| hypothetical protein MtubK4_05944 [Mycobacterium tuberculosis KZN
           4207]
 gi|297730627|ref|ZP_06959745.1| hypothetical protein MtubKR_06034 [Mycobacterium tuberculosis KZN
           R506]
 gi|306775256|ref|ZP_07413593.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306781830|ref|ZP_07420167.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306788174|ref|ZP_07426496.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306792503|ref|ZP_07430805.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306796908|ref|ZP_07435210.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306802786|ref|ZP_07439454.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306806968|ref|ZP_07443636.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306967170|ref|ZP_07479831.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|307079086|ref|ZP_07488256.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|307083650|ref|ZP_07492763.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313657957|ref|ZP_07814837.1| hypothetical protein MtubKV_06039 [Mycobacterium tuberculosis KZN
           V2475]
 gi|8928492|sp|O53449|Y1101_MYCTU RecName: Full=UPF0118 membrane protein Rv1101c/MT1133
 gi|2896738|emb|CAA17217.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|13880717|gb|AAK45391.1| membrane protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|124600440|gb|EAY59450.1| conserved membrane protein [Mycobacterium tuberculosis C]
 gi|134149521|gb|EBA41566.1| conserved membrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148505039|gb|ABQ72848.1| hypothetical protein MRA_1112 [Mycobacterium tuberculosis H37Ra]
 gi|148720840|gb|ABR05465.1| conserved membrane protein [Mycobacterium tuberculosis F11]
 gi|253321363|gb|ACT25966.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289415451|gb|EFD12691.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289439745|gb|EFD22238.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289542847|gb|EFD46495.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289685373|gb|EFD52861.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
 gi|289690223|gb|EFD57652.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289693753|gb|EFD61182.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
 gi|289708746|gb|EFD72762.1| conserved membrane protein [Mycobacterium tuberculosis GM 1503]
 gi|289712753|gb|EFD76765.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|308216193|gb|EFO75592.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308325466|gb|EFP14317.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308335191|gb|EFP24042.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308338997|gb|EFP27848.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308342664|gb|EFP31515.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308346550|gb|EFP35401.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308350470|gb|EFP39321.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308355121|gb|EFP43972.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308362999|gb|EFP51850.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308366647|gb|EFP55498.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323720381|gb|EGB29475.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326904672|gb|EGE51605.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328459605|gb|AEB05028.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
          Length = 385

 Score =  117 bits (292), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 126/347 (36%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +  + +  +L   YFL+ +F  ++ A +  +   P++  F  +   ++   A  
Sbjct: 7   LTQKRALAILTLIALLFGAYFLRNYFVLIVVAAVGAYLFTPLFKWFTKRF--NTGLSAAC 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             +S +   +VP+  L    ++++  +V  V    +   +                 +  
Sbjct: 65  TLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRTTDLSTLGDKILQFVNGLFDRVPF 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H++        +   +  N  +++  F             S I  +        +   +
Sbjct: 125 LHITVTADALRKAMISVAQNVGEWLLHFLRDAAGSLAGVITSAIIFVYVFVALLVNREKL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L   L         + +  ++R T  G  +IA  +G+   ++ ++AG      +
Sbjct: 185 RTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFVIAACQGVAGAASIYIAGFHHGFFI 243

Query: 245 GVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I    +++IP G  I      I ++  GNI     + LW  + +  +D  LRP LV  
Sbjct: 244 FAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHLLVVTNIDNVLRPILVPR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 304 DARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|313105950|ref|ZP_07792212.1| hypothetical protein PA39016_000120037 [Pseudomonas aeruginosa
           39016]
 gi|310878714|gb|EFQ37308.1| hypothetical protein PA39016_000120037 [Pseudomonas aeruginosa
           39016]
          Length = 357

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 113/354 (31%), Gaps = 12/354 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +    G  APVL+A++I F    +      +      
Sbjct: 9   MQRYFSDEEAVVLAIMLVLGFSVILAFGGMLAPVLAAMVIAFLIQGVVGMLE-RFRVPHL 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F   +     + L  + L+ L      ++  L +++         V   L +    + + 
Sbjct: 68  FAVWLVYSLFLGLLALFLVVLLPLLWQQLFTLFNELPRMLGEWQSVLLMLPERYPSLISE 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   K +   +                +    +     + ++  + ++ + I +FFF +D
Sbjct: 128 EQVLKAIETARGEF--------GQIGQWALTSSLASLPVVVNVMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                               K++   + + I +   G  I  +  G V   A+   G+  
Sbjct: 180 KKRFHTWFHRYLPRE-RGLMKQVWAEMNQQIANYIRGKVIEIVITGAVTYIAFAYLGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  +  ++P    +  +     I     G       L +  AI   +    L P
Sbjct: 239 AALLALLVGLSVVVPYIGAVVVSVPVAMIAFFQWGWGDQFIYLMVAHAIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            L    + L  +     ++      G  G+F    L  L+  +       + E 
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLVKAVLDAWPKDLPET 352


>gi|300822720|ref|ZP_07102857.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331679542|ref|ZP_08380212.1| putative membrane protein [Escherichia coli H591]
 gi|300524720|gb|EFK45789.1| conserved hypothetical protein [Escherichia coli MS 119-7]
 gi|331072714|gb|EGI44039.1| putative membrane protein [Escherichia coli H591]
          Length = 376

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLITLTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|302527288|ref|ZP_07279630.1| predicted protein [Streptomyces sp. AA4]
 gi|302436183|gb|EFL07999.1| predicted protein [Streptomyces sp. AA4]
          Length = 405

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 100/335 (29%), Gaps = 16/335 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +   +L +L     P+  AL++     P+    +           ++A +
Sbjct: 36  RFLIVLTMLGVAAWTLGYLSAVTVPIGIALLLSALFAPLVERLVRW-HVPRALATLVAII 94

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L  +       + +L ++V  +        +                    
Sbjct: 95  VGLAVLGGVLTLVVTTVTASLPQLGNQVGASLARINNWLQ--------------HGPLHL 140

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +             +                 ++  +  L FF   G  +   L
Sbjct: 141 PQLQQLLDKAVSAIQGNTAELTTRVLSTAATVGGVLTEMLLTLFVLVFFLYSGNQVWHFL 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +             R     + S       +A  + + +G   WL GVP  V L  + 
Sbjct: 201 LKIVPSATRDEIDVAGRRGFASLVSYVRATVAVACVDAVCIGLGIWLVGVPLAVPLAALI 260

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A IP    +       +  L+      A  +       + +    L+PFL+G  ++L
Sbjct: 261 FIGAFIPILGAVVTGAVAVLIALVANGFVAAGIVLAIVVAVMQLESHVLQPFLLGRAVRL 320

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L    G+  G+   G++G  +   ++A+     
Sbjct: 321 HPLAVVLGIALGLEIAGIVGALLAVPILAVAKAAL 355


>gi|291280377|ref|YP_003497212.1| transporter [Deferribacter desulfuricans SSM1]
 gi|290755079|dbj|BAI81456.1| transporter [Deferribacter desulfuricans SSM1]
          Length = 344

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/320 (19%), Positives = 123/320 (38%), Gaps = 11/320 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K    P   A  I +   P+     +  + + T   +I  V    + I  +LF+F   +
Sbjct: 29  IKNILTPFAIAFFISYLLDPVVDRLEN-LKFNRTLSVLIVFVLFSLIVIAIILFIFPVMI 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  L+ K+ +  Q      +  +               +               +N +
Sbjct: 88  NEINILLKKIPVYLQMLDNKIKEYNYYAIIQPYINEIKSFVVKNLGKI--------SNIL 139

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I    S +   FL++ L    + I +F+F +D  SI  +  ++ E          S  
Sbjct: 140 LDIFNVLSGYLGNFLNFVLLYSIVPILIFYFLKDFDSIVAKTKTMLEKKGFLNVVDKSEE 199

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              +++S F G  I+++  G++      + G+   V +GV++ I++M+P    I     S
Sbjct: 200 FNSILKSYFRGQFIVSVLLGILYSVTLLIVGIEGAVFVGVLSGILSMVPYLGFIVGFVTS 259

Query: 267 IYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + L      ++F+   + L   I   I    + P +VG  + L  +   F ++ G    G
Sbjct: 260 LLLAFIQFQDLFHPLFVVLGFTIVQVIESNLITPKIVGESLGLHPVAVIFAIMVGGSLFG 319

Query: 325 LLGLFIGPVLMALIAVIWKE 344
           + G+     + ALI V + +
Sbjct: 320 IAGMIFSLPIAALIKVSFMD 339


>gi|331003812|ref|ZP_08327304.1| hypothetical protein HMPREF0491_02166 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412004|gb|EGG91401.1| hypothetical protein HMPREF0491_02166 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 417

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 106/337 (31%), Gaps = 17/337 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---------------SKKEESSTFLAV 64
           I +++  +    + VL  +++ F   P+Y                      + +     +
Sbjct: 41  IAMAVRTVISTVSSVLYGVVMAFLMAPVYDKITVWVSEILSSLFPKWKKSGKYAKMIATL 100

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASEL 122
              V ++ +    ++ +       +  ++S      ++     + + +    +       
Sbjct: 101 ACLVILILVVFTLIMMIIPELANSITNVISYAPSGMENLENWLKDILNKNPDLERLIIGN 160

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +             +        +  +         + ++  + ++ M+  L        
Sbjct: 161 YLDISERLSDFATTNVLPNVNTYVKNLSSGVLNALGVIVNIIIGMMVMMYLLNMKTTLVS 220

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              + + ++            +R +  +     +G  I +I  GL+      +  +P  +
Sbjct: 221 QAKKIVYAVAGVRVGNEIVTEARYIKNMFEKFIVGKIIDSIIIGLINYIFMAVIHMPYAL 280

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            + V+  +  +IP   P      SI LL+  +   A    +W  +   +    + P ++G
Sbjct: 281 LISVVVGVTNVIPFFGPFIGAVPSIVLLLLISPITALQFAIWILVLQQVDGNIIGPKILG 340

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               LP     F ++      G++G+ I     A+I 
Sbjct: 341 QTTGLPSFWVLFSILLFGGLFGIVGMIIAVPTWAIIY 377


>gi|303229262|ref|ZP_07316057.1| putative membrane protein [Veillonella atypica ACS-134-V-Col7a]
 gi|303231297|ref|ZP_07318033.1| putative membrane protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302514027|gb|EFL56033.1| putative membrane protein [Veillonella atypica ACS-049-V-Sch6]
 gi|302516035|gb|EFL57982.1| putative membrane protein [Veillonella atypica ACS-134-V-Col7a]
          Length = 373

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 113/345 (32%), Gaps = 13/345 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVS 69
           I   +  L   F P++    + F    +   +                      +++ V+
Sbjct: 30  IASGIDALITAFVPLIVGACMAFVLDILVVRYERWLWPHIKSGWRYKIRRPLSIILSFVT 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +            +  +  +VS         +   +W+  +   +  +   T   + 
Sbjct: 90  ISLIVYFIARMAVPQLVHSITLIVSAAPQLY---LDFQQWIYHLSNTVPLASNPTVLNTL 146

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +       T G  ++           ++  L +IF I  L    R      + L 
Sbjct: 147 NGESIVNYTREWGTKGGTYVVNTMGTILSWTVNIALGLIFAIYMLLDKERLMSQGKRILK 206

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +     +      ++++  +   S F+G  I A+  G+++G   W+  +     +  +  
Sbjct: 207 AYASDTWVNRVTYVAKVAVQTFSSFFVGQFIDALILGIMVGVTLWICNISYATTIACVIG 266

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP         +   +L+  +  +A    +   +   I    + P +VG  + LP 
Sbjct: 267 LTGLIPLVGIYVGGLMGAVILLTISPMDALIYVIILEVLHQIESNVIYPKIVGNSVGLPG 326

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L  F  ++ G   MG+ G+ IG  L+A    +    +     + E
Sbjct: 327 LWVFAAVIIGGSLMGVTGMIIGVPLVATCYKLLMTDVEERLASNE 371


>gi|223938116|ref|ZP_03630013.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223893160|gb|EEF59624.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 436

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/391 (13%), Positives = 131/391 (33%), Gaps = 53/391 (13%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  M+++ +   +  L G   PV  AL++ +   P+   F+ ++     F  ++  +  +
Sbjct: 29  LLVMLVWSVGWIVNALSGVLLPVAVALVLAYILDPVVEFFVRRR-IPRLFSILLVFLLGV 87

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L  +    + E ++LV                    P G   + +W    S   
Sbjct: 88  VIVTALLGSVVPGLVRETRKLVKDFPDTTHKLQSRFDHFLQTPLGHRLAMVWQHEASQGI 147

Query: 132 SLKILSETFLKTNGIDFIPRFASRF----------------------------------- 156
           +      T   ++  + +    +                                     
Sbjct: 148 AHAGKPGTESSSSATNMVAVTGTNNVESPTNNAALGKPKTIANSPVDEVIIPALTKAGMW 207

Query: 157 -----------GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                         ++++ +  + + + LF+F  +   I+++             ++I  
Sbjct: 208 TLEWITNQLSKVTTWVEFLIGFVLVPVYLFYFLLEKKGITRRWTDYLPIHESKAKQEIVF 267

Query: 206 I---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I       +   F G  ++A+  G ++  AY + G+   V LG + A++ ++P    I+ 
Sbjct: 268 ILSSFNDCMIVFFRGQVLVALCVGGLMTIAYLIMGLNYAVLLGAVIAVLGIVPYLGTITG 327

Query: 263 TAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            A+++ +     G+  +   +    A    + D  + P ++G    L  L     ++ G 
Sbjct: 328 LALALIVAAVQYGDWGHPLAVIAIVASVKLLEDFVIIPKIIGDRAGLHPLTIMVAVMVGT 387

Query: 321 RTM-GLLGLFIGPVLMALIAVIWKESIMAIK 350
             + G +G  +   L AL+  +    I   +
Sbjct: 388 TLLGGFIGAVLAIPLTALLRTLMFRYIWKRR 418


>gi|225016793|ref|ZP_03705985.1| hypothetical protein CLOSTMETH_00705 [Clostridium methylpentosum
           DSM 5476]
 gi|224950461|gb|EEG31670.1| hypothetical protein CLOSTMETH_00705 [Clostridium methylpentosum
           DSM 5476]
          Length = 405

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 116/342 (33%), Gaps = 14/342 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE---------SSTFLAVIATVSV 70
           I  +   +    AP     +I F  +          ++         + +   + A V  
Sbjct: 32  IASAFGTITSLLAPFFYGAVIAFLLYLPSRKLEGLIKKTNNKFLQKRARSISVLSALVLF 91

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L  V LL         +    + +              ++    +       +     
Sbjct: 92  IALLAVLLLLFIPGMYKNIVSFANSIPGYLNDAYNFITQYAEGADWLSNILKNIQSQLTF 151

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            ++      +++   I    +  + F  + ++  L II  I  L        ++++ +  
Sbjct: 152 DNI----MGWVQAADIGTYAKGITSFIGVVVNLFLGIILSIYMLIDRASIKRNLNRVVVL 207

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +         +   +  V+ S   G  + A+  G+V G    +  VP+   LG+I  +
Sbjct: 208 ALKPRRAKNLGALLSRIADVLYSFLYGQALDALFVGIVTGIILAVIQVPNAAVLGLIYGL 267

Query: 251 MAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            ++IP    +     V +   + G        F+   I  +I    + P ++G  I +  
Sbjct: 268 FSLIPYFGAMFGVLTVCLLTFLSGGFTKLILAFVLITILQWIDGNIINPKIIGNAIGIKP 327

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L   FG+       G++G+ IGP LMA+I  + +E +   + 
Sbjct: 328 LYVIFGVTLFGGLFGIVGMLIGPPLMAIIIELVQEFVGDRER 369


>gi|291563071|emb|CBL41887.1| sporulation integral membrane protein YtvI [butyrate-producing
           bacterium SS3/4]
          Length = 369

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 115/337 (34%), Gaps = 1/337 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    ++  + ++++ V    L  FF P +   I+   + P+   F  + +      +++
Sbjct: 9   IILNILVPLLTVYLVCVWGLRLVVFFLPFVIGWIVAAIANPVVRFFEKRLKIVRRHGSMV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V+ L I  +  LF +   EM E    +             L+    G     L   
Sbjct: 69  LIAGVLALVIFGIYALFSWVFREMTEFGQALPGIYASIREEVD-LACERIGGLLKYLPAD 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   S       ++            SR      +  ++ I + ++ + F  D   + 
Sbjct: 128 TETTIISELENVGGYIGDFVQKIAASAGSRVVRTLPEVFVNTIIVFLSSYLFLADHDKLV 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +  +       Y + +   +  +I   FL    I     +VL        VP  + LG
Sbjct: 188 ETVRKVMPGPVIKYGRMMKNDIRTLIGGYFLAQFKIMFVVAVVLVIGMLFLRVPYGIFLG 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  AI+  +P     +       + +    +      +   +    + + ++P +VG  +
Sbjct: 248 IAIAILDFLPMFGTGTALIPWAVVRLFTGEYGYALSLVILYVLTQGIRQVIQPKIVGDSM 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            LP L T F L  G +  G+ G+ I   +  L    +
Sbjct: 308 GLPPLATLFFLYLGFKFRGIAGMIIAVPVGILFIRFY 344


>gi|257091790|ref|YP_003165431.1| hypothetical protein CAP2UW1_0142 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044314|gb|ACV33502.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 375

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 154/335 (45%), Gaps = 5/335 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE--ESSTFLAVIATVSVMCLF 74
             I+++S + L  F   +L+A +    SWP+Y+ F ++          ++I T+++    
Sbjct: 28  ALIVILSAWILNSFLQAMLAACVTAIASWPLYTRFAARLPRCIGRNSSSLIFTLALTIFV 87

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           + PL+F F   + E   L+S + +A++ GI VP+ L + P                 +  
Sbjct: 88  LAPLMFAFGALLSEAHALLSAIAVADKKGIAVPQGLENAP---LIGPWLAARWQSQLASP 144

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               T+ +      +  +A   G   + +   I F ++ LFF Y++G S++     +   
Sbjct: 145 GALLTWTQRTDAAALVPWAQSLGQFTVRHAFIIFFTVLLLFFLYQEGESLAAGFRRVLRR 204

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +    + +  + +R++   M ++A+ +GL  G AY + GVP       +T ++A++
Sbjct: 205 CLGEHADGFADLATRAVRASVNSMLVVALFDGLASGVAYAIVGVPHAAVWAAVTGLLALV 264

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    ++  A+++ L +             G   LF  DK +RP +    ++L F+    
Sbjct: 265 PFLGYVAVGALALQLAMTVTTTPPLLALGLGCFVLFCGDKVVRPVVACNGVRLRFVWVLM 324

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G +GG   +GL+GL IGPV++ L   +W++ +  +
Sbjct: 325 GCLGGFEVLGLIGLVIGPVVLTLARELWEQRVRDL 359


>gi|322419533|ref|YP_004198756.1| hypothetical protein GM18_2017 [Geobacter sp. M18]
 gi|320125920|gb|ADW13480.1| protein of unknown function UPF0118 [Geobacter sp. M18]
          Length = 354

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 134/345 (38%), Gaps = 5/345 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +     +  I++          P+   LIIG  + P Y+  + +        A    ++
Sbjct: 9   ILAALATVGAIVLFAMLAAPVIKPLAWGLIIGIATMPHYNRLLHRSPAHPGRCAGAMVLA 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V   F++P+  L     +   E   +            R  +   G    ++  T  +  
Sbjct: 69  VAVCFVLPVTALVITAAVNAPEWYKQAEQLVTTLT---RSGTAAMGQFPYAQNLTSLVDR 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +  +    I   A+      +++  +++  +  LFF YRDG  +     
Sbjct: 126 FGIDLAGIGGKIAASSSGIILGLAADLARNMMNFIGTLLIALFILFFIYRDGDRVVSLCI 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                      ++ +  +  +  +  +G  +    +G + G  YW+A VP+ +  G +TA
Sbjct: 186 GRLAPDPRK-AQRFATEIRSITTAVVVGTVLTCAAQGAIAGVGYWVADVPAPIFFGTLTA 244

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A+IP     I +  ++ ++ + G+   A  L  W  I +   D  +RP  +G    + 
Sbjct: 245 IAALIPVVGTAIIWVPLAGFMALSGSYLTAALLAGWCLIFVGFADNAIRPLAIGASSDIS 304

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L    G + G  +MGLLGL +GPV+ A++  +W +++  ++   
Sbjct: 305 TLAVVLGAICGAMSMGLLGLIVGPVIFAILFSMWDDAVAEVEATD 349


>gi|209544129|ref|YP_002276358.1| hypothetical protein Gdia_1983 [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209531806|gb|ACI51743.1| protein of unknown function UPF0118 [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 408

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 122/347 (35%), Gaps = 7/347 (2%)

Query: 2   RETMLNPQGI-MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R +  +PQ I +  + +  +  +LYF      P++ AL++            ++     T
Sbjct: 26  RRSRFDPQTICLLILTVLAVFYTLYFAAAIILPIVLALVVNLLLSAPMRVLHTRLHLPKT 85

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + V  +       +       +      +     H   + R +  I       
Sbjct: 86  LSALVLILGVFGVVGAIGTAISVPAAGWIARAPQTMAALQTHLAVLHRPIQMIQAANDRI 145

Query: 121 ELWTKHLSHPQSLKILSETFL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           E +   +S  Q      +  L    ++    +  F S   +    +   +  M++ LFF 
Sbjct: 146 ENFLSVVSGRQGGGGGGQVVLLAPSSSPGGGLGTFGSSVLLGTRAFVGQLFTMMLMLFFL 205

Query: 178 YRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              G S+ ++   +           +I+  + + +      +TII +  GL      W+ 
Sbjct: 206 LAQGDSLLRRFVEIMPTFADKRRAVQIAYQIERNVSLYLTTITIINVLVGLANMLQCWVF 265

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDK 294
           G+P+ +  GV+  ++  IP   P++   +     L +  +   A            +  +
Sbjct: 266 GMPNPLLWGVLAFLLNYIPIIGPLTGIVIYFVVSLFVFPSALQALLPPTVYLCIHLMEGE 325

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           T+ P ++     L  +     L+      G+ G F+   ++A+  +I
Sbjct: 326 TITPMVLARRFTLNPVLVMGSLMFWDWLWGVWGAFLSVPMLAVFKII 372


>gi|302876700|ref|YP_003845333.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|307687375|ref|ZP_07629821.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|302579557|gb|ADL53569.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
          Length = 371

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 48/313 (15%), Positives = 107/313 (34%), Gaps = 3/313 (0%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           + AP + ALI+     P         +      + I  + V+ +F   L  +    + E+
Sbjct: 35  YLAPFVVALILSLMIEPFVKFLGDTLKLKRAISSAIGVLMVLSVFGGLLALIISKLVREL 94

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L   +    ++       +  I    +  +   K +S+  S    +     ++  + +
Sbjct: 95  ISLSDVLPDLIKN---AYENIMAINSDSFFDKWLPKKISYDFSNITDTLYSSLSSFANPL 151

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            +          +  + +I M+I  +F       I   ++      + +   K    V  
Sbjct: 152 AKGIFSTASALPNMFIFLIVMVIGTYFISSSKHDIINLINKHLPKTWLSSLNKSKDGVFS 211

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +     G  II     + L   + + GV    AL +I ++  ++P      F       
Sbjct: 212 SLSRLLKGYLIILTITFIELLIGFNIIGVKYASALALIISVFDILPLIGSGLFLIPWAIY 271

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +               I + I+ + + P ++G  I L  L T   +  G   +G  G+F
Sbjct: 272 SVITGATTLGIRLFILYIVILIIRQLIEPKIIGAQIGLHPLATLISMYTGFSLLGGAGIF 331

Query: 330 IGPVLMALIAVIW 342
           +GP+++ +   + 
Sbjct: 332 LGPIILLITKAVL 344


>gi|53711948|ref|YP_097940.1| putative permease [Bacteroides fragilis YCH46]
 gi|52214813|dbj|BAD47406.1| putative permease [Bacteroides fragilis YCH46]
          Length = 379

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 117/344 (34%), Gaps = 10/344 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            ++  +L+    L G   P   A +I +  +P+   F  K    S  +++   +  + + 
Sbjct: 19  ALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLRFKSRIISIFCALFSITVV 78

Query: 75  IV-PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + EM  +   +V    +G      +           +  + L+   S 
Sbjct: 79  GISLFYLLVPPMLAEMGRMNDLLVTYLTNGAYSSGTVPPTLSEFIHKHIDLQALNRILSE 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           + +  T  +T    +     S   +  L    +   +++ + F   D  SI++    L  
Sbjct: 139 ENIMNTIKETVPKLWALVAES---INILFSVFASFIILLYVVFILLDYESIAEGWLHLLP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +  +   +   +   +   F G   +A   G++    + +   P  +ALG+    + M
Sbjct: 196 GKYRTFASNLVNDIQDGMNRYFRGQAFVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 255

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +          +   +   I D  L P ++G    L
Sbjct: 256 VPYLQIIGFLPTIVLAILKAADTGENFWVILAGALIVFIVVQAIQDGFLVPRIMGKITGL 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      +G+LG+ I   L  L+   ++  I+  ++
Sbjct: 316 NPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFIINKEK 359


>gi|16264659|ref|NP_437451.1| hypothetical protein SM_b21335 [Sinorhizobium meliloti 1021]
 gi|15140797|emb|CAC49311.1| conserved putative membrane protein, possibly a permease
           [Sinorhizobium meliloti 1021]
          Length = 359

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 125/351 (35%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +    +   ++  ++V  +    F   +  AL++     P++     +        A
Sbjct: 20  PRRSRTLAILVALVVGLVVCYFLAVPFLPALTWALVLTVMFRPLHRRIEKRLRYPEAAAA 79

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               ++   +  VPL F+    + E  +    V  A + G                +   
Sbjct: 80  ATVAIAAFVV-AVPLTFMAERLVNEAAKGAQIVEEAVRSGT----------WRDALANYP 128

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                       L    +  +   ++  F++ F    +   +  I     LF+F RDG  
Sbjct: 129 RLAPVVVWIETQLDLAGIAGSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDGQQ 188

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L             ++   V + +++   G   +A  +G + G  +WL G+P+ + 
Sbjct: 189 ALGALKEYSPLSSQE-MNRLFTRVNETVQAVVFGTVAVAAVQGAMGGLMFWLLGLPAPMV 247

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G+   ++A++P     I +   ++ L + G    A  L  WGA  +  +D  L P  VG
Sbjct: 248 WGLAMGLLAVVPVLGAFIVWLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +KL  L  F  ++GG+   G  GL IGPV   +  ++           +
Sbjct: 308 DRLKLHTLTAFMSMIGGIIVFGSAGLVIGPVAFTVTLLLLDIWRRHNSNPE 358


>gi|160947670|ref|ZP_02094837.1| hypothetical protein PEPMIC_01605 [Parvimonas micra ATCC 33270]
 gi|158446804|gb|EDP23799.1| hypothetical protein PEPMIC_01605 [Parvimonas micra ATCC 33270]
          Length = 400

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 118/333 (35%), Gaps = 4/333 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    M  +  +   L+      L++++I +   P    F  K      +  ++  + + 
Sbjct: 56  LSVFFMIFLFKNYSILRITLVTFLASVVIAYILNPFMKFFERK-NIKRIYAIILIYIIIA 114

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               V  + +F     + K L+  +    ++ +     +                +S   
Sbjct: 115 LAIFVLGIGIFPSTFKQFKHLLFSLPDLVKNFVDYSDSIRKSLFTDT--PFINNMISSIN 172

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +     L ++   ++    +     F+   + +I + +  F+   +   I + +   
Sbjct: 173 GQLVKIANTLLSSSASWVTGMVAGI-SGFIAVIIQLILIPVITFYLLLEKDKILEAISKR 231

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +  +  +I R + + +     G  I+AI  G+       L G+     +GVIT + 
Sbjct: 232 VPDRYENFLVRIWREIDESLSMFVRGRIIMAIFVGVATMIYLMLFGIEFSFVIGVITCVA 291

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      ++ L +    F A  + +      ++ +  L P ++G    +  L 
Sbjct: 292 DIIPYIGPFLGFVPAVLLALFKGPFTAFWVAVLFCFVQWLENNILGPKILGDSTGMHPLI 351

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L+ G    G+LG+     + A+I +I+K 
Sbjct: 352 VLILLIIGGGMFGVLGMIFSVPVAAVIKIIYKH 384


>gi|254369738|ref|ZP_04985748.1| hypothetical protein FTAG_01070 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122697|gb|EDO66826.1| hypothetical protein FTAG_01070 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 368

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/355 (14%), Positives = 111/355 (31%), Gaps = 6/355 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N + I+   +M    + L F   + AP+L+AL+I +    + +      +     L  I 
Sbjct: 16  NNEPIVFVGLMLFFYLVLTFSGDYIAPILAALVIAYLLDTLVNILQKFTKLKRIVLVYIV 75

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +  +  L    + ++ + V +              LS     +   +     
Sbjct: 76  YILFLIALLSLIFVLLPIIINQLIDFVKQASHILSSLKTSLEELSIKYPTILTEDRINSI 135

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S   S+       + +N   FI +  +    +     + +  + + +F+F +D   +  
Sbjct: 136 VSWFDSI---DWKKISSNVGSFILQNTATTLPVLFSVLIYLFLVPLMVFYFLKDKEKMIN 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S       A +  +   +   +     G  I  I    +    +    +   V L V
Sbjct: 193 WFKSFLPEENGALY-YVWNDLKPKLADYVRGKAIELIIVSTLTYIGFAYFNLNYAVLLAV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              +  +IP    +  T   I +  L  G       + +   +   +    L P L    
Sbjct: 252 GVGLSVIIPYVGMVIITIPVIMVGILQFGLNGTFVSMLIVFFVIQALDGNLLVPLLFSEV 311

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           + +  +     ++      GL G+F    L  L           +   K +   N
Sbjct: 312 LDMHPVGVVSAILIFGGIWGLWGIFFAIPLGLLFISGVNMFRNHLNGKKTQADIN 366


>gi|60680148|ref|YP_210292.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|265765290|ref|ZP_06093565.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60491582|emb|CAH06334.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|263254674|gb|EEZ26108.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 379

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 117/344 (34%), Gaps = 10/344 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            ++  +L+    L G   P   A +I +  +P+   F  K    S  +++   +  + + 
Sbjct: 19  ALIVGLLILFKRLSGVLLPFFVAWLIAYMIYPLVKFFQYKLRFKSRIISIFCALFSITIV 78

Query: 75  IV-PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + EM  +   +V    +G      +           +  + L+   S 
Sbjct: 79  GISLFYLLVPPMLAEMGRMNDLLVTYLTNGAYSSGTVPPTLSEFIHKHIDLQALNRILSE 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           + +  T  +T    +     S   +  L    +   +++ + F   D  SI++    L  
Sbjct: 139 ENIMNTIKETVPKLWALVAES---INILFSVFASFIILLYVVFILLDYESIAEGWLHLLP 195

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +  +   +   +   +   F G   +A   G++    + +   P  +ALG+    + M
Sbjct: 196 GKYRTFASNLVNDIQDGMNRYFRGQAFVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 255

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +          +   +   I D  L P ++G    L
Sbjct: 256 VPYLQIIGFLPTIVLAILKAADTGENFWVILAGALIVFIVVQAIQDGFLVPRIMGKITGL 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      +G+LG+ I   L  L+   ++  I+  ++
Sbjct: 316 NPAIILLSLSIWGSLLGMLGMIIALPLTTLMLSYYQRFIINKEK 359


>gi|150009942|ref|YP_001304685.1| putative permease [Parabacteroides distasonis ATCC 8503]
 gi|255012811|ref|ZP_05284937.1| putative permease [Bacteroides sp. 2_1_7]
 gi|149938366|gb|ABR45063.1| putative permease [Parabacteroides distasonis ATCC 8503]
          Length = 415

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 11/356 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIAT 67
           + +   +++  I+  +  L+    P L A ++ +   P    F  K   +S     +   
Sbjct: 46  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V++  L  + ++ +      E  + +  +   +     VP         + ++  + + +
Sbjct: 106 VTLGLLITLLIVMVVPSIAAEADKTLELIRTHDPGEGHVPLIPHSWMEYLESNVNFAQIM 165

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L         +  I                 +  +++   F   D   I+  
Sbjct: 166 ELLSKENLLKAVKQIAPQLWSILSNTFSILFS----ITIVFVILLYFIFILLDYEKIANG 221

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  V LG+ 
Sbjct: 222 WIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGILLAIGFKIINFPLAVTLGLF 281

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ +IP    I    + +  L       +          L   I   I D  L P ++
Sbjct: 282 IGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGLAILVLGIVQCIQDLYLTPRIM 341

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G  + L        L      +G +GL I   L  L    +K  I+      +  S
Sbjct: 342 GKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEYNELDSRS 397


>gi|307318663|ref|ZP_07598096.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306895690|gb|EFN26443.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
          Length = 359

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 125/351 (35%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +    +   ++  ++V  +    F   +  AL++     P++     +        A
Sbjct: 20  PRRSRTLAILVALVVGLVVCYFLAVPFLPALTWALVLTVMFRPLHRRIEKRLRYPEAAAA 79

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               ++   +  VPL F+    + E  +    V  A + G                +   
Sbjct: 80  ATVAIAAFVV-AVPLTFMAERLVNEAAKGAQIVEEAVRSGT----------WRDALANYP 128

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                       L    +  +   ++  F++ F    +   +  I     LF+F RDG  
Sbjct: 129 RLAPVVVWIETQLDLAGIAGSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDGQQ 188

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L             ++   V + +++   G   +A  +G + G  +WL G+P+ V 
Sbjct: 189 ALGALKEYSPLSSQE-MNRLFTRVNETVQAVVFGTVAVAAVQGAMGGLMFWLLGLPAPVV 247

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G+   ++A++P     I +   ++ L + G    A  L  WGA  +  +D  L P  VG
Sbjct: 248 WGLAMGLLAVVPVLGAFIVWLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +KL  L  F  ++GG+   G  GL IGPV   +  ++           +
Sbjct: 308 DRLKLHTLTAFMSMIGGIIVFGSAGLVIGPVAFTVTLLLLDIWRRHNSNPE 358


>gi|298374299|ref|ZP_06984257.1| membrane protein [Bacteroides sp. 3_1_19]
 gi|298268667|gb|EFI10322.1| membrane protein [Bacteroides sp. 3_1_19]
          Length = 385

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/356 (14%), Positives = 117/356 (32%), Gaps = 11/356 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIAT 67
           + +   +++  I+  +  L+    P L A ++ +   P    F  K   +S     +   
Sbjct: 16  RIVFGILVISGIIYLIALLRNALLPFLIAWLLAYMMQPFVKFFQYKLCFKSRILSIMAVL 75

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V++  L  + ++ +      E  + +  +   +     VP         + ++  + + +
Sbjct: 76  VTLGLLITLLVVMVIPSIAAEADKTLELIRTHDPGEGHVPLIPHSWMEYLESNVNFAQIM 135

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L         +  I                 +  +++   F   D   I+  
Sbjct: 136 ELLSKENLLKAVKQIAPQLWSILSNTFSILFS----ITIVFVILLYFIFILLDYEKIANG 191

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +  + + ++  V   +   F G ++IA+  G++L   + +   P  V LG+ 
Sbjct: 192 WIDLIPERYRPFLQGLAEDVEYSMNRYFRGQSLIALSVGVLLAIGFKIINFPLAVTLGLF 251

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ +IP    I    + +  L       +          L   I   I D  L P ++
Sbjct: 252 IGVLNLIPYMQAIGIIPMILLSLLRSAETGENFWLIFGMAILVLGIVQCIQDLYLTPRIM 311

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G  + L        L      +G +GL I   L  L    +K  I+      +  S
Sbjct: 312 GKAMGLNPAIILLSLSIWGTILGFIGLIIALPLTTLCLSYYKRFILHEYNELDSRS 367


>gi|304393250|ref|ZP_07375178.1| membrane transporter [Ahrensia sp. R2A130]
 gi|303294257|gb|EFL88629.1| membrane transporter [Ahrensia sp. R2A130]
          Length = 353

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 115/327 (35%), Gaps = 13/327 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + +   +LY  +GFF P+  A++   T  P+   F  +   S     V+  + V    +
Sbjct: 13  FIILFTAALYLARGFFLPIAVAVVFALTMSPVIRFFTRRGVPSPVTAFVLVLILVGFGVL 72

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                +          +   +  A + G  +   L+ +   + A +   K +    + + 
Sbjct: 73  AIYTLVIP--------MADWIERAPEIGNQLKEKLAALKPSLQAVQEAQKEVEAATAGEG 124

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   +   G  F    AS          ++++ +   L         + Q  DS+    
Sbjct: 125 RAVQKVAVEGPGFFAYAASSVLAGITMLVITLVLLTFLLASGDMFYAKLVQAFDSM---K 181

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I+  + + +      + II    G+V+    +L G+P+    G +  +   +P
Sbjct: 182 DKKRALRIAHDMERDVSRYLFTIAIINASLGVVIAIGLYLLGMPTPYIWGAVAGLANFMP 241

Query: 256 GGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               I     +  + ++    +  A  +  +     FI  + + P +VG  ++L  +  F
Sbjct: 242 YVGAILGLGAATAVAVVSFDTLAPALTIAAFYFSCTFIEGQFITPTVVGRRLELNAVAVF 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +       G++G  I   L+ ++  
Sbjct: 302 ISVAFWAWLWGIVGALIAVPLLVILKT 328


>gi|126433854|ref|YP_001069545.1| hypothetical protein Mjls_1252 [Mycobacterium sp. JLS]
 gi|126233654|gb|ABN97054.1| protein of unknown function UPF0118 [Mycobacterium sp. JLS]
          Length = 376

 Score =  117 bits (292), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 99/320 (30%), Gaps = 14/320 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 PV+ ALI+    WP       K         ++  +  + L    +  +    +
Sbjct: 45  AWVILLPVVLALIVCTVLWPPVRWLRGK-GVPPAAAVLLILLVALGLLSGLVAAVAPAIV 103

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +  EL  +                      W                + + T    +  
Sbjct: 104 EQSTELAQQATAGVVQVRD------------WLGGPPLDISEAQLDSAVTAITDRLNSSS 151

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I               ++    I+  FF  +DG      L     +    +  ++   
Sbjct: 152 AQIASGVFTGVGAATSALVTAFTAIVVTFFLLKDGPRFIPWLRRTVGNPAAPHVAEVLER 211

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAV 265
           V   +        ++++ + +++G+   + GVP   AL +IT I   +P     ++    
Sbjct: 212 VWSTLGGFIRTQALVSLVDAVLIGAGLVILGVPLAYALAIITFIGGFVPIVGAFVAGGLA 271

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +  L+     +A  +         +    L+P+L    +KL  +     +  G  T G+
Sbjct: 272 VLIALVSNGPVDALIVLGIILAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTLGASTFGV 331

Query: 326 LGLFIGPVLMALIAVIWKES 345
           +G F+   + A  AVI +  
Sbjct: 332 IGAFLAVPVAAAAAVIIRYY 351


>gi|229543555|ref|ZP_04432615.1| sporulation integral membrane protein YtvI [Bacillus coagulans
           36D1]
 gi|229327975|gb|EEN93650.1| sporulation integral membrane protein YtvI [Bacillus coagulans
           36D1]
          Length = 372

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 112/348 (32%), Gaps = 10/348 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G+   + + +   ++Y    +  P + AL+I     P+ +    K         +I+ +
Sbjct: 11  RGLFVALCILVGFFAVYLAVKYAYPFIIALLIALMINPLVNFLDRKVRLPRALAVLISLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +F+  +  L    +     L   +    Q  +     L          +L     +
Sbjct: 71  LIIGVFVGIITLLVAEIVTGANYLADVLPEHVQTLVNYSESLVTAQVLPLYDQLAGLFKN 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                +      ++  G          +  + +          +    +IF ++A FF  
Sbjct: 131 LDAGQQETIVQNIQAAGQKIASSAGDFLSGLFKKLPGLVSWIPNAATVLIFALLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   ++ +   L           +   +   +         +     +++     +  V
Sbjct: 191 KDWNQLTGKGKLLLPKKARKSGITVFADLRNALFGFVRAELTLISMTLVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + ++  I+ ++P           I                   I + +  + + P
Sbjct: 251 DYAITIALVCGIVDILPYLGTGVVFVPWIIYEFITGSLPLAIGLTVLYIVVIVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            ++   I +  L T   L  G +T+G LGL +GP+ + L+  + +  +
Sbjct: 311 KILSSSIGMNPLATLIALFIGFKTVGFLGLILGPITLVLLTALIRAHV 358


>gi|254038642|ref|ZP_04872698.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300930985|ref|ZP_07146343.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|300946776|ref|ZP_07161021.1| permease, PerM family [Escherichia coli MS 116-1]
 gi|300956810|ref|ZP_07169076.1| hypothetical protein HMPREF9547_02618 [Escherichia coli MS 175-1]
 gi|301645918|ref|ZP_07245831.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|331644174|ref|ZP_08345303.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331655057|ref|ZP_08356056.1| conserved hypothetical protein [Escherichia coli M718]
 gi|912460|gb|AAB18449.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|226839148|gb|EEH71171.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
 gi|300316394|gb|EFJ66178.1| hypothetical protein HMPREF9547_02618 [Escherichia coli MS 175-1]
 gi|300453570|gb|EFK17190.1| permease, PerM family [Escherichia coli MS 116-1]
 gi|300461163|gb|EFK24656.1| conserved hypothetical protein [Escherichia coli MS 187-1]
 gi|301075827|gb|EFK90633.1| conserved hypothetical protein [Escherichia coli MS 146-1]
 gi|331036468|gb|EGI08694.1| conserved hypothetical protein [Escherichia coli H736]
 gi|331047072|gb|EGI19150.1| conserved hypothetical protein [Escherichia coli M718]
          Length = 376

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|311032867|ref|ZP_07710957.1| hypothetical protein Bm3-1_20404 [Bacillus sp. m3-13]
          Length = 366

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 116/345 (33%), Gaps = 6/345 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI       +   FAP++ A ++ +   P+ +              +   +  + L 
Sbjct: 25  LVDFIFTPLTVMISTLFAPIILAGVMYYLLRPLVNLADRY--IPRALAILSIYLMFIGLI 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + L  +      ++  LV                L +        +     L       
Sbjct: 83  TLLLFLIGPTLQQQVNSLVKNTPEIINDIRDYTIELQENEYIARFQQDERFSLEEISGKI 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +     T     +    S        + + ++ +   LF+  +DG  +  Q+      
Sbjct: 143 ADNLNAYVTAFGSNVVNVISAIT----GFLILLVVIPFVLFYMLKDGERLPDQVLKFIPR 198

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + + + +   + S   G  I+++  G+++   + + G+   + L +I     +I
Sbjct: 199 QHEREGRNVLKDMDIALSSYIQGQIIVSVFVGVLIYIGFLIIGLEYSLVLALIAMFTNVI 258

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P   T  S+ +        A  + L   I   I    + P ++G  + +  L    
Sbjct: 259 PFIGPFIGTIPSVIVAFFDRPIMALWVLLVVVIVQQIESNFISPQVMGKKLDVHPLTIIL 318

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L+   +  GLLGL +     A+  VI   +I  IK  K K++ +
Sbjct: 319 LLLVASKFAGLLGLLLAVPTYAVSKVIVLHTIRFIKLRKVKVTED 363


>gi|156977852|ref|YP_001448759.1| hypothetical protein VIBHAR_06643 [Vibrio harveyi ATCC BAA-1116]
 gi|156529446|gb|ABU74531.1| hypothetical protein VIBHAR_06643 [Vibrio harveyi ATCC BAA-1116]
          Length = 365

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 124/330 (37%), Gaps = 5/330 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +K F  PV+   II     PI               A    +  + L + PL+ +    
Sbjct: 21  IIKAFILPVIWGAIIAVALMPICMKLERVYGGKRGLAATTIALLGIALLVAPLVMVSGSI 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +      +  +   +         +++ P             +      I +      +G
Sbjct: 81  VDGATHALEVLQNGDIKIPGPKPSVAEWPLVGDKLYEVWTLFATNLEKAIQTFMPQIKSG 140

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +           L   +S+         F     SI+  L ++         K  + 
Sbjct: 141 LTSLLGMVGGALGSLLLSIISLAIAAG----FMTYSESIASGLRTVAVRTAGDNAKSWTT 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           ++   I+S  LG+  +A  + L++G+ +++ GVP+   L +I  I+ +    A ++   V
Sbjct: 197 LIAATIKSVLLGVVGVAAIQALLIGAGFFIFGVPAAGLLTLILMILCIAQLPALLAVLPV 256

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             Y+ +  +   AT   +W  +   + +   +P L+G  + +P      G +GG+   G+
Sbjct: 257 FGYMYMTNDTSTATMFTVW-VVVAALSENLFKPMLMGRGVDVPMPVILLGAIGGMLFYGI 315

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +GLF+G V++A+   ++   +   K  +++
Sbjct: 316 VGLFLGAVILAIWYELFVWWLSIEKAQQQE 345


>gi|213854545|ref|ZP_03382785.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. M223]
          Length = 335

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 96/324 (29%), Gaps = 12/324 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
             G  AP+L A+++ +      +   +    S  + A I  +  + + ++    +     
Sbjct: 15  FSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRWAASIVLILFVGILLLMAFVVMPIAW 73

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +   L+  +             L      +  + +      + ++  +     +    +
Sbjct: 74  QQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRTRMLNMGDSVVKYSL 133

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +          + ++ + + +FF  +D   +   +  +          ++   
Sbjct: 134 ASLVGLLT--------LAVYLVLVPLMVFFRLKDKEQMLNAVRRVLP-RNRGLAGQVWNE 184

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + + I +   G  +  +  G+     + L G+   + L V+     +IP       T   
Sbjct: 185 MNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPV 244

Query: 267 I--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +   L   G        F    I   +    L P L    + L  L     +V      G
Sbjct: 245 VGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWG 304

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
             G+F    L  LI  +       
Sbjct: 305 FWGVFFAIPLATLIKAVVHAWPDG 328


>gi|91205420|ref|YP_537775.1| permease PerM-like protein [Rickettsia bellii RML369-C]
 gi|91068964|gb|ABE04686.1| Permease PerM-like protein [Rickettsia bellii RML369-C]
          Length = 351

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 120/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + I +     +     P   A II +   P      SK + S+   +++
Sbjct: 1   MNKTAIFWLLFIGIFISGFMLISEAIRPFFIAFIISYLLQPAIEFVASKFKLSNKISSIV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F   L  L      ++   V+ +     +          +P  M        
Sbjct: 61  VYLIFLSIFFTALTLLVPVIYGQVSTFVNNIPKYKDYFQTEI-----LPPIMTKIYAVEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +++      + +        +  +      + +I ++  +  + + I LF+F RD   I 
Sbjct: 116 NIADKIRDSLSNFINSIFTILGSLANNFWHYTLITINIFVLFLLIPIILFYFLRDWTRII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + SL           I   +  ++ +   G   I +   +    ++ + G+   + LG
Sbjct: 176 ENMKSLLPLKSRHKILGILSSINSLLAAYIRGQLNICLLLSIYYSISFSIIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP        F  ++I  L  G       + +   I        L P ++G 
Sbjct: 236 ILTGFLVIIPFIGTFISCFLTLTIGYLTFGATTQLFYIMVVYIIGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G +G+F    +  +  ++    I   K ++
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGFIGIFFAIPIAGVTKILLFNIIKFYKSSR 345


>gi|114048310|ref|YP_738860.1| hypothetical protein Shewmr7_2819 [Shewanella sp. MR-7]
 gi|113889752|gb|ABI43803.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 369

 Score =  116 bits (291), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 123/344 (35%), Gaps = 4/344 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   M++ +          F   +L A+I+    +P + S   +  +     A +  +  
Sbjct: 22  IKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQSIAKRLNDKQGRAATLLIIIG 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++P + +       M  LV  V             +++IP          +  S  
Sbjct: 82  LMVLVLPTITMVSSMTDNMGSLVESVNQNTLEVPAPKESIANIPFVGAKIYDVWQKASTD 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + S           +    +      L    S I   I + +      S ++    
Sbjct: 142 LPSLVKSLQPHLGEVTKQVIHALASISGSLLMSMFSFIIAGIMMAYGRAGAQSSARIATR 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P    K+  I    IR+  LG+  +A  + L++G    LAG+P      ++  +
Sbjct: 202 IAG---PERGAKLINICSTTIRAVALGVIGVAFIQALLVGIVMTLAGIPLVGIFFILVLV 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +    A +       Y+ + G+     + ++    I    VD  L+P L+G  +  P 
Sbjct: 259 LGIAQVPALLVTLPAIAYIWMTGDNGTVGSIIYTVLLILAGAVDNVLKPILLGRGVDAPM 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G +GG+ T G+LG+FIG  L+++   I+   +    E  
Sbjct: 319 PVVLIGALGGMATSGILGMFIGATLLSIGYRIFMAWVDEGLEEP 362


>gi|331649281|ref|ZP_08350367.1| putative membrane protein [Escherichia coli M605]
 gi|331041779|gb|EGI13923.1| putative membrane protein [Escherichia coli M605]
          Length = 376

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++   + +IL  ++        +L AL       P+ + FI +  +       +A  
Sbjct: 39  RILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAIT 93

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++ L  L         E +S +   N+        L ++   +       + L 
Sbjct: 94  IVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQ 153

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S K+++ T     G+           M  +     +  +   + F   +       L
Sbjct: 154 RMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGL 213

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                               K +       T++++  G+++     L GV   +   V+ 
Sbjct: 214 HRAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLA 257

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + +
Sbjct: 258 FLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGM 317

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +  F  L+     +G +G+ +   L ++  +
Sbjct: 318 STMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|292491904|ref|YP_003527343.1| hypothetical protein Nhal_1835 [Nitrosococcus halophilus Nc4]
 gi|292491920|ref|YP_003527359.1| hypothetical protein Nhal_1854 [Nitrosococcus halophilus Nc4]
 gi|291580499|gb|ADE14956.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
 gi|291580515|gb|ADE14972.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 352

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 102/332 (30%), Gaps = 18/332 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L+ L++       V + +++      +      +   S  +      + +M LF V
Sbjct: 28  VAVTLLFLWYAIPVLLLVFAGILLAILLHGLSDWIARRTFLSYGWSLTFVVLDLMTLFAV 87

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  +      +   L  ++  A +         +     +   +               
Sbjct: 88  GLSLVAPDVADQAYHLSQQLPEALKRLEQYFAQYTWGQELLALIDKDLM----------- 136

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                     +F+   AS      L+   S I ++    +         + +  L     
Sbjct: 137 -------PSREFMLTQASNIFSSTLNVLTSFIIILFIGLYGAAQPRLYVEGITQLVPIRR 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +   V + +     G  I     G++     WL G+P  + LG++  ++  IP 
Sbjct: 190 RQRVRTVLHQVGQTLLWWLFGRMISMTIVGMLTVPGLWLLGIPHILTLGLLAGLLTFIPY 249

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P+     +  L +  +      + L            L P +    + +P + T    
Sbjct: 250 IGPVLSVVPAALLALLQSPIQVVNVLLLYLFLQSFEGYLLTPLVQKRTVAMPPVLTISVQ 309

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           V     +G  GL +   L+A + V+ +   + 
Sbjct: 310 VLFGTLLGFFGLMLATPLVAALMVLVRMLYVE 341


>gi|50843048|ref|YP_056275.1| hypothetical protein PPA1574 [Propionibacterium acnes KPA171202]
 gi|289426485|ref|ZP_06428228.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289428705|ref|ZP_06430388.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|295131123|ref|YP_003581786.1| hypothetical protein HMPREF0675_4641 [Propionibacterium acnes
           SK137]
 gi|50840650|gb|AAT83317.1| conserved membrane protein, UPF0118 [Propionibacterium acnes
           KPA171202]
 gi|289153213|gb|EFD01931.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289158103|gb|EFD06323.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|291376946|gb|ADE00801.1| conserved hypothetical protein [Propionibacterium acnes SK137]
          Length = 433

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 104/332 (31%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 92  VLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATTAGTA 150

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    ++ + +     + +L S +    +    +  W + +                
Sbjct: 151 VIVVLAAGVVGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQDVIA-------- 202

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +            II ++  + F   D   +  +L 
Sbjct: 203 ---------DKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMIFMVMDTPQMHDRLR 253

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 254 MA--GSRKPDVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 311

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  ++  F++   ++P   G  + L 
Sbjct: 312 LTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQSIIQPKFAGDAVGLT 371

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 372 PTMSFVSLLLWGWVFGALGTLIALPCSLLVKA 403


>gi|224538326|ref|ZP_03678865.1| hypothetical protein BACCELL_03217 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520048|gb|EEF89153.1| hypothetical protein BACCELL_03217 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 376

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 114/349 (32%), Gaps = 11/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I+  +L+ L  L G   P   A +I +  +P+ S F  K    +  +++   +
Sbjct: 13  RAVILGAIIIGVLMLLKRLSGVLLPFFLAWLIAYLIYPLVSFFQHKLRLKNRIISIFCAL 72

Query: 69  SVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + +   V    L    + E   +   ++             + +   +  +       
Sbjct: 73  FTLSVIGSVAFYLLVPPMIQEFLRVKDLLIEYFSTTHTASNVPTTLSEFIRQNIDLHILE 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  IL    +    +  +   +      F    L    +++ + F   D  SIS+ 
Sbjct: 133 QMFSQENILDALKVTVPKLWSLISESINLLFGFFTVFL----ILLYIVFILLDYESISEG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +      I   V   +   F G  ++A+  G++    + +   P  + LG+ 
Sbjct: 189 WAHLMPKKYRKTVTGILNDVKDGMNRYFRGQALVALCVGILFSIGFLIIDFPLAIGLGLF 248

Query: 248 TAIMAMIPGGAPISFTAVSIYL----LIKGNIFNATCL--FLWGAIELFIVDKTLRPFLV 301
              + M+P    I F    +         G+ F            +   I D  L P ++
Sbjct: 249 IGALNMVPYLQIIGFVPTIMLAILKAADTGDNFWIIIASATAVFIVVQIIQDGYLVPRIM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G    L        L      MG+LG+ I   L  L+   ++  I+  +
Sbjct: 309 GKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRYIINQE 357


>gi|27378566|ref|NP_770095.1| hypothetical protein blr3455 [Bradyrhizobium japonicum USDA 110]
 gi|27351714|dbj|BAC48720.1| blr3455 [Bradyrhizobium japonicum USDA 110]
          Length = 351

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 135/349 (38%), Gaps = 5/349 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   ++  +I  +LY ++ F   ++ AL++     PI+          +   A + T  
Sbjct: 5   VIRLGLLALLIFWTLYLIRPFVTILVWALVLAVAFNPIFLVLAKILGGRAKLAAGLLTAI 64

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I P  +L    +  +++   ++   +      P  +   P        +    S 
Sbjct: 65  NLAIVIGPAAWLGLGAVDGIRDFAGELAAGDLVIPSPPAAIKTWPLIGTPLYEFWDQAST 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +             +   A   G+  + + LS++       +    G  +     
Sbjct: 125 NLRSVVQRIAPYLKPFAGTLLGIAGDAGVGTIKFLLSVVVAGCLFPY----GPQLVAAGR 180

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S    + P   +    +    IR+   G+  IA+ + L+ G  + LAG+P    L ++  
Sbjct: 181 SFLSRIVPEQSEHFLDLAGATIRAVAQGVIGIAVVQALLAGIGFKLAGIPIAGLLALLVL 240

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++++  G  I    V I++    ++  A  L       + I+D  L+P ++G  +  P 
Sbjct: 241 LLSIVQIGGAIIMLPVMIWIWTDKDVTVAV-LLTLFLGIVSILDNILKPLVMGRGLTTPA 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L    G++GG    G++GLFIGP+++++   +    I   + +    ++
Sbjct: 300 LVILIGVIGGTLGHGIVGLFIGPIVLSVAWELTVAWIRTDRASAASQAT 348


>gi|257065304|ref|YP_003144976.1| predicted permease [Slackia heliotrinireducens DSM 20476]
 gi|256792957|gb|ACV23627.1| predicted permease [Slackia heliotrinireducens DSM 20476]
          Length = 400

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 43/329 (13%), Positives = 108/329 (32%), Gaps = 15/329 (4%)

Query: 33  PVLSALIIGFTSWPIYSSFISK----------KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           P++    + +    + S +             K          A ++++ +    ++ + 
Sbjct: 48  PIIIGAALAYIINILMSFYERHYGRCFSGALAKRLERPVCMGGAIITIVGIVGAIMVLVV 107

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  LV     A  + +     ++ IP     + +         +  +   T   
Sbjct: 108 PQFVGAINTLVQSAPAAVNNLLSNESLVALIP-----ASVVDYMKELDWNTVLADVTAAL 162

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +GI       S      L + + IIF +  L    R    I +   +     + A   +
Sbjct: 163 QSGIAGWLAGLSNTFTTMLIWVMGIIFAMYFLASRDRVVPQIKRVAKAYMRPEWYAQGAR 222

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
            + ++        +G    A+  G++      L  +P    +  +  + A+IP       
Sbjct: 223 FAELLDDSFHKYVVGQCTEAVILGVLCFIGMTLLRLPYASMIAALIGLTALIPIVGAYLG 282

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            AV  ++++  +   +    ++  +   I    + P +VG  + L  +     +  G   
Sbjct: 283 AAVGAFMILTFSWQQSLEFLVFIIVLQQIEGNFIYPKVVGTSVGLSGVLVLAAVTIGGAV 342

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ G+ +   L+A    + KE +   + 
Sbjct: 343 SGIFGMLVAVPLVAAGYRVLKEDVAKREA 371


>gi|111022136|ref|YP_705108.1| hypothetical protein RHA1_ro05169 [Rhodococcus jostii RHA1]
 gi|110821666|gb|ABG96950.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 421

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 105/344 (30%), Gaps = 14/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +   +  L     PV  AL+      P+     +K     +   V+  +
Sbjct: 37  RLLVIFAGLLTLGYIVTRLDTVLIPVGLALLSSALLVPLVDWLQAK-GVPRSAAVVVVLI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    + F+    +  +  L  +   +                  W ++       
Sbjct: 96  GSIGIVAGIMTFVVEQFIEGLPGLTEQFEASVTQIQ------------GWLTDGPLHFSE 143

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   S      +    +   A     +  +     +  +  L FF   G  I + +
Sbjct: 144 DQIRQAGDSVVKSIQDNRQQLTSGALTTATVVGEIFTGALLTLFTLIFFLYGGSQIWEFV 203

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         +         +         +A  + + +G+   + GVP  + L  + 
Sbjct: 204 TRLVPTTSRRRVRLAGSQGFGSLIGYVRATVAVAAADAVGIGAGLAILGVPLALPLASLV 263

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A IP     ++     +  L+      A  +       + +    L+P L+G  ++L
Sbjct: 264 FIGAFIPIVGAFLTGFLAVLVALVTKGFLTALIVLGIIIGVMQLEAHVLQPLLLGRAVRL 323

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L     +  G+   G++G  +   ++AL+    +  +    +
Sbjct: 324 HPLAVVLAITTGIVLAGIVGGLLAVPIVALLNTAVRSLLSTDPD 367


>gi|120555058|ref|YP_959409.1| hypothetical protein Maqu_2143 [Marinobacter aquaeolei VT8]
 gi|120324907|gb|ABM19222.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 366

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/347 (12%), Positives = 107/347 (30%), Gaps = 9/347 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            +  +    +  + +  IL +LY       P++ A++      P+      +        
Sbjct: 17  RSFADLSTPIYGLFILGILYTLYIAHQIVLPIILAVLTSLLLAPLVKKAYLRWRIPRVVS 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++  ++V+   +     +    +   ++    +         + R +  +       E 
Sbjct: 77  ALVLVLAVLAGILGLGAAVATPALEWAQKAPEGLSRLLVGESEIMRQIDKVSQSAEQVEK 136

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + LS  Q  K  +      +    +   A        +    +   +   +F    G 
Sbjct: 137 SVEELSKDQGTKPTTVVLQTDSWRSQLMSKAR-------NGIAGLALALALTYFLLVSGD 189

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +               +I+      I      + +     G++ G   W  G+P   
Sbjct: 190 RLIRNFVKQLPRSQRKTVLRITHDSQHQIAQYLAVLGLSNTSVGVLTGLICWAIGLPDPA 249

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             G+I  +   IP    +    +   +  +    ++      +   +   IV   L P++
Sbjct: 250 VWGLIAGLARFIPYLGNMLTITLLAIVSAISLDVLWMMVLAPISFIVLTTIVGFFLEPWI 309

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            G  + +  +  F  +       G +G+ +   LM +I V+ K+   
Sbjct: 310 HGFRMAINPVIIFVSIFFWGWLWGPVGVLLAVPLMTVIQVVLKQIPR 356


>gi|300870109|ref|YP_003784980.1| hypothetical protein BP951000_0476 [Brachyspira pilosicoli 95/1000]
 gi|300687808|gb|ADK30479.1| putative exported protein [Brachyspira pilosicoli 95/1000]
          Length = 394

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 72/356 (20%), Positives = 141/356 (39%), Gaps = 10/356 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------EESST 60
           Q      I   I +    LK F   +  AL+      P++   I K              
Sbjct: 8   QIFFITFIFLSIFIMYQLLKPFGMVIFFALVFYVVLSPLFKKAIGKSYGKEDKISMIKRH 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            LA++ +++ + +F+VP   L Y  ++++ ++ +  +    +        +D    + + 
Sbjct: 68  TLALLFSLTSLIIFLVPTSLLLYTIIVQLIDISNIGIKYFMNLDFNSILNNDRLRELLSM 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +        S     T+   ++ +  +        +  S IFM+ +LFFF+ D
Sbjct: 128 LPVEISAAEILRRIQDSLLSNLTSVSSYLTQNVAGILKGTGKFVSSFIFMMFSLFFFFVD 187

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +Q+ SL       Y  ++ +   + IR    G     I +G+     Y + GV +
Sbjct: 188 GEYLKEQVSSLIPIE-KKYLDRLFKQASEGIRGIIFGNLFTGIFQGICAFIVYSIFGVTN 246

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   ++T I + +P     I +  + +  +I G I  A    +     + I D  +RP 
Sbjct: 247 SLTFALLTIIASFMPIIGTTIIWIPLGVLFIINGEILRAIIFLVVSWFFITIPDNFVRPL 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L+G  I+L  L  FF ++GGV   GL G+ +GP+   L   I +        + ++
Sbjct: 307 LLGNRIELHPLFIFFAILGGVLFFGLSGIILGPLTFILFFEIMRMYNEERLFSDKE 362


>gi|297583588|ref|YP_003699368.1| hypothetical protein Bsel_1290 [Bacillus selenitireducens MLS10]
 gi|297142045|gb|ADH98802.1| protein of unknown function UPF0118 [Bacillus selenitireducens
           MLS10]
          Length = 362

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 115/352 (32%), Gaps = 13/352 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           IM ++++++  +  +            F P+L A ++ +   PI +    K      F  
Sbjct: 13  IMLFLLIYLGSLIDWVFTPISVFISTAFFPLLFAGVLYYLFRPIVNLLSRKF--PRGFSI 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +  + L    +  +      +   L+  V         V   L +        E  
Sbjct: 71  ALLYIGFLGLGAGAISLIGPELQKQFYNLMDSVPGIMNDLQYVFMQLQET----DLIEGS 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                     ++     + +     +      F     +  L    +   LFF  +DG  
Sbjct: 127 GLEEWLDVEDRLEEIGAMISTIAGGLVSNTMAFLGTLFNTLLLFFIVPFILFFLLKDGDR 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++               + + + +   I     G+ I+    G++  + + + GV   + 
Sbjct: 187 LAPYALKFFSEEKQEEIRPVLQNMDFTISRYIQGILIVCTFIGVLYYTGFTIIGVEYSLI 246

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L +I     +IP   P      ++ + +  +   A  + +   I   +    ++P ++G 
Sbjct: 247 LAIIGMFTNVIPYVGPWLGAVPAVIVALIHSPLQAFLVIVLVVIIQQVESILIQPNVIGR 306

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +++  +     ++   +  G+LG+ +   + A+  V+        +    K
Sbjct: 307 VMRIHPVTVLLLVLVAGQFAGILGMILVIPVYAVTKVVVTHLYEIWRGRDPK 358


>gi|257465432|ref|ZP_05629803.1| putative permease perM-like protein [Actinobacillus minor 202]
 gi|257451092|gb|EEV25135.1| putative permease perM-like protein [Actinobacillus minor 202]
          Length = 350

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 101/346 (29%), Gaps = 11/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   +PQ I    I+      +YF  G   P+L A+++ +           K        
Sbjct: 11  QKFNDPQTIALLGILLFGFGIIYFFSGLIMPLLIAIVLAYLLESPIRFLTEKLHFPRLLS 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++     + +    L+ +      +    +  +           + L +   G+    +
Sbjct: 71  VLLVFGGSISIVAFLLVVMVPSLWNQAVNFIRDLPNMFNLLNEWVQALPEHYPGLVDYAM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S  ++  +     L    ++ I               +    + + +FF  +D  
Sbjct: 131 LDGLMSSLKTKILGYGESLLAISVNSIISLV--------GLGVYAFLVPLMVFFLLKDKP 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +    +          ++   +   I S   G  +  +  G+V         +   +
Sbjct: 183 IFLRSFIKMMP-KNRRLATRVWIEMQGQIASYIRGKFLEILIVGIVTYIILIFFDLRYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  ++P    +  T       L   G   +   L L   I   +    + PFL
Sbjct: 242 LLSVVVGLSVLVPYIGAVIVTIPVALIALFQFGLSPDFYYLLLAFVISQLLDGNLVVPFL 301

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  L     ++      G  G+F    L  L+  +     
Sbjct: 302 FSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVINALP 347


>gi|108798197|ref|YP_638394.1| hypothetical protein Mmcs_1226 [Mycobacterium sp. MCS]
 gi|119867293|ref|YP_937245.1| hypothetical protein Mkms_1243 [Mycobacterium sp. KMS]
 gi|108768616|gb|ABG07338.1| protein of unknown function UPF0118 [Mycobacterium sp. MCS]
 gi|119693382|gb|ABL90455.1| protein of unknown function UPF0118 [Mycobacterium sp. KMS]
          Length = 376

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 92/304 (30%), Gaps = 14/304 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP       K         ++  +  + L    +  +    + +  EL  +       
Sbjct: 61  VLWPPVRWLRGK-GVPPAAAVLLILLVALGLLSGLVAAVAPAIVEQSTELAQQATAGVVQ 119

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                          W                + + T    +    I             
Sbjct: 120 VRD------------WLGGPPLDISEAQLDSAVTAITDRLNSSSAQIASGVFTGVGAATS 167

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             ++    I+  FF  +DG      L     +    +  ++   V   +        +++
Sbjct: 168 ALVTAFTAIVVTFFLLKDGPRFIPWLRRTVGNPAAPHVAEVLERVWSTLGGFIRTQALVS 227

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCL 281
           + + +++G+   + GVP   AL +IT I   +P     ++     +  L+     +A  +
Sbjct: 228 LVDAVLIGAGLVILGVPLAYALAIITFIGGFVPIVGAFVAGGLAVLIALVSNGPVDALIV 287

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                    +    L+P+L    +KL  +     +  G  T G++G F+   + A  AVI
Sbjct: 288 LGIILAVQQLEGNVLQPWLQSKSMKLHAVIVLLAVTLGASTFGVIGAFLAVPVAAAAAVI 347

Query: 342 WKES 345
            +  
Sbjct: 348 IRYY 351


>gi|309774561|ref|ZP_07669587.1| putative permease [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917676|gb|EFP63390.1| putative permease [Erysipelotrichaceae bacterium 3_1_53]
          Length = 394

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 107/348 (30%), Gaps = 10/348 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-------SSTFLAVIATVSVMCLF 74
             L   +     ++ A ++      I S  I   ++             ++  +  + L 
Sbjct: 34  FVLSVFRSLLYAIVFAYVLNLPMKHIESFLIRHTKKDSFLQKRKRVISMLLTFLLALILI 93

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE---LWTKHLSHPQ 131
           I+    +    +  +  L+  +     + +     +       +  E      + +  P 
Sbjct: 94  ILIGSIILPSIIESLISLMENLTSFFTNIVKNIDGVLAYFHIDYRIEDITQVEQFIQMPW 153

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + +   L +     I   A+ F   F       +F +  L         + +   + 
Sbjct: 154 EKIVTNVINLLSGSASGILSSATGFVSSFAVGFTGFMFSLYLLSGKENFIRQMRKVTAAF 213

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +     +  V ++  S   G    A    ++      L   P    +  + A+ 
Sbjct: 214 FGFDNSSTIFHYASRVNRIFSSFIGGQLTEACILWVLYYVFMRLFQFPYPELICTLIAVC 273

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +++P    +   +V   +++  +   +    ++  +  +  D  + P +VG  + LP L 
Sbjct: 274 SLVPVFGSMFAMSVGAIMMLSKDPLQSVWFIVFYQVLSYFEDNVIYPRVVGNSVGLPGLW 333

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               +       G+ G+ +     A + V + E +      ++ I + 
Sbjct: 334 VLLSIFVFGDLWGVFGMVMAVPTTACLYVFFTEFVNNRLRKQKLIVTE 381


>gi|319651819|ref|ZP_08005944.1| hypothetical protein HMPREF1013_02556 [Bacillus sp. 2_A_57_CT2]
 gi|317396471|gb|EFV77184.1| hypothetical protein HMPREF1013_02556 [Bacillus sp. 2_A_57_CT2]
          Length = 373

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 110/353 (31%), Gaps = 10/353 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +      ++ + L +  +L     P +  L I F   P  +    K +       +I
Sbjct: 8   RTVRFFFVIGVVILSLYAFLYLSKVTYPFIIGLAIAFLINPFVNMMEVKWKIPRALAVLI 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A + +  +F   +  L    +     L   V       I               ++L + 
Sbjct: 68  ALILIFAIFAGLITLLVAEIVSGADYLAKVVPQHLDTLIDFIEQFFAGQIIPLYNQLASL 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRF----------ASRFGMIFLDYCLSIIFMIIALF 175
             +     +    T ++  G  F                     F +    +IF ++A F
Sbjct: 128 FNNLGTGQQDTIMTNIENVGKQFGSTLGDFIQAFFEKIPNILSWFPNAATVLIFSLLATF 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D   +S     +         + +   + K +         +     +++ +   +
Sbjct: 188 FISKDWHRLSGLFSRILPSRAKKSGRTVFADLQKALFGFVKAQATLVSITTVIILAGLLI 247

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             V   + + ++T ++ +IP           I     G   +         I + +  + 
Sbjct: 248 LRVDYAITIALVTGLVDIIPYLGTGLVFVPWIIYEAIGGEMSRAIGLGILYIIVLVQRQI 307

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + P ++   I L  L T   L  G + +G LGL  GPV + LI  + K  +  
Sbjct: 308 MEPKILSSSIGLDPLATLIALFVGFKLIGFLGLIAGPVTLVLITTLHKAGVFR 360


>gi|313675596|ref|YP_004053592.1| hypothetical protein Ftrac_1494 [Marivirga tractuosa DSM 4126]
 gi|312942294|gb|ADR21484.1| protein of unknown function UPF0118 [Marivirga tractuosa DSM 4126]
          Length = 368

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 107/346 (30%), Gaps = 19/346 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL- 62
            +           + +++  L   K    P+  AL++ F  +P++  F      +     
Sbjct: 2   KLSFQNSFFTLAFVAVLIAFLVIAKSILIPLGIALLLAFILYPVHKKFSQWGVGNILAAF 61

Query: 63  -AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +++  + ++   I            E+     K+       I        +   +   +
Sbjct: 62  FSILLLIIIIGGGITFFSAEIIALSDEISNFGEKLSKLYTDVIIFVNQNVSLVEDLNKDQ 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L                  LK+   D              ++   +I M I +F F    
Sbjct: 122 LLND---------------LKSWLKDSAGSLLGGTFNSTANFFTGLITMFIYMFLFLIYH 166

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +             + K+ + V +V +    GM ++ +  G       W+ G+ S 
Sbjct: 167 KGLVRAFMKFSPEDKKQEFFKMLKGVQQVGQKYLSGMLVLIVILGFANSIGLWIIGIDSP 226

Query: 242 VALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              G + A +++IP           V    +   ++     + +       I    L P 
Sbjct: 227 FLFGFLAASLSIIPYIGTTLGATIPVLYAFMSHDSLLVPLAVAILFWAVQLIESNFLSPK 286

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +VG  + +        L+ G    G+ G+ +     A++ V+ +E 
Sbjct: 287 VVGNSVNVNAFAAILSLIVGASIWGVAGMVLFLPFAAMLKVVCEEY 332


>gi|300926828|ref|ZP_07142596.1| hypothetical protein HMPREF9548_04828 [Escherichia coli MS 182-1]
 gi|301329802|ref|ZP_07222534.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|309794754|ref|ZP_07689176.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|300417178|gb|EFK00489.1| hypothetical protein HMPREF9548_04828 [Escherichia coli MS 182-1]
 gi|300844100|gb|EFK71860.1| conserved hypothetical protein [Escherichia coli MS 78-1]
 gi|308121804|gb|EFO59066.1| conserved hypothetical protein [Escherichia coli MS 145-7]
 gi|324018612|gb|EGB87831.1| hypothetical protein HMPREF9542_02706 [Escherichia coli MS 117-3]
 gi|332104381|gb|EGJ07727.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 376

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|298291114|ref|YP_003693053.1| hypothetical protein Snov_1114 [Starkeya novella DSM 506]
 gi|296927625|gb|ADH88434.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 374

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 106/314 (33%), Gaps = 7/314 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q      ++  ++ + + L     P ++ L + +   P+ +        +    +++A 
Sbjct: 5   KQVTFWLTVLAAVIAASWLLSSVLLPFVAGLALAYFLNPVTTRLEKW-GVNRLAASLVAI 63

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + + I+ +L +      ++   + ++         +    S+     W  +L   ++
Sbjct: 64  ALTLLIGILLMLLVVPIFGSQLAAFIQRLPDYIVRLQNMIT--SEEKTATWLRDLVGDNM 121

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q       +   T  +  I +     G   +     ++   +  F+   D   + ++
Sbjct: 122 PSIQQGLNELVSQGATYMLTLI-QSLWTGGQALISLFSLLVITPVVAFYILNDWNHMVEK 180

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +DS          + ++R + + I     G +++ +  G     +  + G+     +G I
Sbjct: 181 VDSWLPVKNRPVIRGLARQMDRAIAGFVRGQSLVCLILGSFYAISLSMTGLNFGFVIGFI 240

Query: 248 TAIMAMIPGGAPISFTAV---SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           + I+  IP    ++   +      +    +      +        FI    L P LVG  
Sbjct: 241 SGIITFIPYVGSLTGLVLAAGVAIVQFFPDYSMIGLVIGIFVFGQFIEGYILSPKLVGDS 300

Query: 305 IKLPFLPTFFGLVG 318
           + L  +   F L+ 
Sbjct: 301 VGLHPVWLMFALLA 314


>gi|150004388|ref|YP_001299132.1| putative permease [Bacteroides vulgatus ATCC 8482]
 gi|294776785|ref|ZP_06742248.1| membrane family protein [Bacteroides vulgatus PC510]
 gi|149932812|gb|ABR39510.1| putative permease [Bacteroides vulgatus ATCC 8482]
 gi|294449261|gb|EFG17798.1| membrane family protein [Bacteroides vulgatus PC510]
          Length = 378

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 112/351 (31%), Gaps = 11/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +GI+  M++  IL  +  L G   P   A +I +  +P+   F +K          ++  
Sbjct: 13  RGILTAMVIIGILYLVNRLSGVLLPFFIAWLIAYLIYPMVIFFQNKLRLRNRVISILVVL 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ +  +  + L    + E  +L   +      G         +   +       K  
Sbjct: 73  LVLLSIITLAFVGLVPPIIEEFGKLKELLTAYFIEGSKQAAIPGTVANFIKEHIDMLKIH 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +        +  +   +                +++  FF   D  +I++ 
Sbjct: 133 EALNESNFANTMRNVLPQVWALLTQSVNIVFSVFTSF----IILLYTFFILLDYEAIARG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L           I   V   +   F G   +A   G++    + +   P  +  G+ 
Sbjct: 189 WIKLIPARHREMTVHIVTDVQDGMNKYFRGQAFVAFCVGILFSIGFLIIDFPLAIGFGLF 248

Query: 248 TAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ M+P    I+F    +  L       +   +   C FL   I   I D  + P ++
Sbjct: 249 IGLLNMVPYLQLIAFIPTVLLALLKAADTGENFWWILFCAFLVFCIVQIIQDGLIVPKVM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G    L        L      MG++G+ I     +L+   ++  I   ++ 
Sbjct: 309 GKITGLNPAIILLSLSVWGALMGIVGMIIALPCTSLMLSYYQRYIRIKEKE 359


>gi|302876888|ref|YP_003845521.1| hypothetical protein Clocel_4095 [Clostridium cellulovorans 743B]
 gi|302579745|gb|ADL53757.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 387

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 116/343 (33%), Gaps = 14/343 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-------------KEESSTFLAVI 65
            +L  L +      P +    I F      + F +K             ++ +  F  ++
Sbjct: 34  AVLGVLSYCYTLLLPFILGGCIAFILNIPMNYFSNKFSRVQGNKLGSLVRKGNKIFSLIL 93

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWT 124
           + V V+ + I+ L  +        K L +    A+         +  +   +     +  
Sbjct: 94  SFVLVLGVIILVLALVIPQIAETAKRLPTTFENASVIVKSWIENVDWLSNDIINKINVIE 153

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +   +    S      + I      A+ F    +++ L ++F I  L          
Sbjct: 154 IDWNSVFNEIKSSVFNGAGSMISSTIGVATSFLNGVVNFSLGLVFSIYLLLDKENLSKQC 213

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +           +I+ +  K   +   G  + A+  G +      +   P  + +
Sbjct: 214 KKILYAFLPKEKVVSILEIASLANKTFSNFLTGQCVEAVILGFLFFVTMSILHFPYAMVV 273

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V  A  A+IP         +  +L++  N   A    +   +   I    + P +VG  
Sbjct: 274 SVFIACTALIPVFGAFIGGGLGFFLIVMDNPTKALLFLVLFLVLQQIEGNLIYPRVVGNS 333

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           + LP +     +  G + MGL G+ I   L ++  V++++++ 
Sbjct: 334 VGLPSMWVLVAITLGGKLMGLTGMLIFIPLCSVAYVLFRKAVN 376


>gi|254447267|ref|ZP_05060734.1| permease PerM [gamma proteobacterium HTCC5015]
 gi|198263406|gb|EDY87684.1| permease PerM [gamma proteobacterium HTCC5015]
          Length = 354

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 112/348 (32%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P+ +   +++   L  +  +    AP+L+A+I+ +    +     +        
Sbjct: 6   QRHFSDPRVVSLALLLLGGLALILLVGDILAPLLAAMILTYLLEGVVLKLQAH-HFPRLL 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V+  +  + L +  LL L      ++ EL+ ++             L      ++  +
Sbjct: 65  AVVLVLLGALGLTLFLLLGLVPLLSNQITELIRELPHMVGRAQTYLLTLPTEYPELFNEQ 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   +            +       F+       + + + +I +   +FF  +D 
Sbjct: 125 QMAELIDSLRGEI--------GSLGQSFVSFSIASAGNLITFGIYLILVPTLMFFMLKDK 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   +         +  K++   V   I +   G  I       V  + +++ G+   
Sbjct: 177 AQILDWMRGFMP-DNRSLIKEVWHEVDIKIGNYVRGKFIEIGIIWAVSYATFFVMGLNYA 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPF 299
           + L  +  +  +IP    I+ T     +       +A    L +   +   +    L P 
Sbjct: 236 LLLSALVGVSVIIPYIGAIAVTIPVALIAFFQWGVSAELLYLLIAYQVIQVLDGNVLVPV 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     +V      G  G+F    L  L+  + K    
Sbjct: 296 LFSEVVNLHPVAIIAAVVFFGGIWGAWGVFFAIPLATLVQAVLKAWPK 343


>gi|227496031|ref|ZP_03926342.1| possible integral membrane protein [Actinomyces urogenitalis DSM
           15434]
 gi|226834424|gb|EEH66807.1| possible integral membrane protein [Actinomyces urogenitalis DSM
           15434]
          Length = 445

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 104/336 (30%), Gaps = 9/336 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+  ++++ ++ + +  +   F  V  AL++     P+ + F             +A  +
Sbjct: 97  GLGIFLVVALVFLGISRIVPVFVGVFIALVVTAILHPLVTFFAR--VMPRYPATFLALAT 154

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                   + ++      +   L ++        +           G        + +  
Sbjct: 155 TAAFLAALVYYVVSSVTDQWSSLAAQFSTGVNTILDFVEH------GPLPIHFSQQEVVQ 208

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +        +    +           ++  + +   +    F    G  + +   
Sbjct: 209 TMQGLVNQGQRYVESNATSLAGEVLSNAGTVVNVFVVLALAVFTSIFLLASGGRMWRWFL 268

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +       +   + +            G  I+A+ + ++ G    + GVP    L V+  
Sbjct: 269 NELPAHLRSRVHRAAGAGWYTFAGYARGTVILALTDAVMAGVFLQVVGVPLAAPLAVLVF 328

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A IP    P++     +  L          + L  A    I    L+P ++G  + L 
Sbjct: 329 IGAFIPMIGAPLAMIVAMVVALASKGFVAMVVVGLGVAGIGQIEGHILQPLIMGRQVSLH 388

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +     +  G  + GLLG  +   L+++   ++ E
Sbjct: 389 PVVVGIAVAVGTFSAGLLGAVVAVPLVSVAWSVYSE 424


>gi|157827022|ref|YP_001496086.1| permease PerM-like protein [Rickettsia bellii OSU 85-389]
 gi|157802326|gb|ABV79049.1| Permease PerM-like protein [Rickettsia bellii OSU 85-389]
          Length = 351

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 120/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + I +     +     P   A II +   P      SK + S+   +++
Sbjct: 1   MNKTAIFWLLFIGIFISGFMLISEAIRPFFIAFIISYLLQPAIEFVASKFKLSNKISSIV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F   L  L      ++   V+ +     +          +P  M        
Sbjct: 61  VYLIFLSIFFTALTLLVPVIYGQVSTFVNNIPKYKDYFQAEI-----LPPIMTKIYAVEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +++      + +        +  +      + +I ++  +  + + I LF+F RD   I 
Sbjct: 116 NIADKIRDSLSNFINSIFTILGSLANNFWHYTLITINIFVLFLLIPIILFYFLRDWTRII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + SL           I   +  ++ +   G   I +   +    ++ + G+   + LG
Sbjct: 176 ENMKSLLPLKSRHKILGILSSINSLLAAYIRGQLNICLLLSIYYSISFSIIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP        F  ++I  L  G       + +   I        L P ++G 
Sbjct: 236 ILTGFLVIIPFIGTFISCFLTLTIGYLTFGATTQLFYIMVVYIIGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G +G+F    +  +  ++    I   K ++
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGFIGIFFAIPIAGVTKILLFNIIKFYKSSR 345


>gi|301059634|ref|ZP_07200543.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300446280|gb|EFK10136.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 353

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 50/345 (14%), Positives = 136/345 (39%), Gaps = 3/345 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                 +   +L+ +     F + ++ A++I    + +Y+       +     ++  TV 
Sbjct: 8   RFFLIFLFCSLLLIVTLFWTFLSAIILAMLIVSIFYSLYAKVNHLFRKREALASLCFTVL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++   I+P+ +       E  +         +   I V      +    +        L 
Sbjct: 68  ILITLIIPMSWFVGTLSNEAYDFYRTSSSKMSLSKIKVFLRDDPVWAARFKKINDMTGLE 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     + +  N   F+    S      L++ +    M + +++ ++DG  + +  
Sbjct: 128 ITPETIENLGSSIGKNIGLFLYNQISSVASNLLNFLIQFFLMALTMYYLFKDGARLKRYF 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      +  +K++    ++ R+  +G  +  I +G++ G  ++  G+ S    G + 
Sbjct: 188 FELLPVP-ESQLEKLTDKFHEMGRAIVVGNGLSGIVQGILGGLGFYFFGLSSPFLWGTVI 246

Query: 249 AIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + MA +P     +    + + L + GN   A    ++      +++  ++P L+G  +++
Sbjct: 247 SFMAFLPVIGASAVFIPTTVILFLHGNSGLALGFLIYNLSYSSVIEYLIKPRLIGQGMQM 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L  F G++GG++  G+LG+  GP+++ +   + +   +  ++ 
Sbjct: 307 NALLVFVGIIGGIKVFGILGIVYGPLIITVFLTLAEIYRLEYRDK 351


>gi|313204814|ref|YP_004043471.1| hypothetical protein Palpr_2353 [Paludibacter propionicigenes WB4]
 gi|312444130|gb|ADQ80486.1| protein of unknown function UPF0118 [Paludibacter propionicigenes
           WB4]
          Length = 377

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/353 (15%), Positives = 127/353 (35%), Gaps = 9/353 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ ++ + L  L G   P L A ++ +   PI   F  K    S  L++IAT+
Sbjct: 15  RIVIGLTVLILLFLLLNRLSGVLLPFLVAWLLAYLLQPIVKLFQHKLRFKSRVLSIIATL 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    I+ L+ +    +    + +S+++ A    I V  ++   P        +     
Sbjct: 75  ILFFGSIIGLISILAPIVSLEVQKLSQLIGAFSKTIDVNTFI---PAAWQDEIKYYLTHL 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q+L            +           + F+     I+ + + L F   D   I+   
Sbjct: 132 DFQTLLKDQNIMEGFKKLAPGLWSFINGSLDFVMGFSVIVIVFLYLVFILLDYEKITSGF 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    +     +I   +   +   F G  +IA+   ++    + +  +P  + LG++ 
Sbjct: 192 YGIIPPKYKTLITEILSDLESGMNRYFRGQALIALIVAILFVIGFSIIQLPLAIILGLLI 251

Query: 249 AIMAMIPGGAPISFTAVSIYLLIK------GNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             + ++P    ++     +  L++              + +   +   I D  L P ++G
Sbjct: 252 GALTLVPYLKALALIPCGVMGLLQAAETGRNFGSILLGIAIVFTVIQVIEDMVLTPKIMG 311

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               L        L      MG++G+ I   +  L+   +K  ++  ++  + 
Sbjct: 312 KVTGLNPAVILLSLSVWGSLMGMVGMIIALPMTTLMISYYKRFVLNDEDEIQT 364


>gi|291166115|gb|EFE28161.1| membrane protein [Filifactor alocis ATCC 35896]
          Length = 365

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 104/327 (31%), Gaps = 2/327 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
                Y + G   P   A  I F   P+      K++ +     +     ++ +  + ++
Sbjct: 31  FFSFAYRVLGILVPFFWAFGIAFLLNPLMVYIEKKRKFNRIVTLLFIYTFLIGVLTLLVV 90

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  + +++  +             L D     + +      +         S  
Sbjct: 91  IVTPQLVKSITDIIKNMPDYYDIVENKISVLLD--SKFFENPELNTMVKDSVDTLAKSTF 148

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               + +  I          FL + + +I  I  L+       S  + +  L       +
Sbjct: 149 DYFNDSLSDIFSRLIGLTSGFLQFIVGLIVSIYMLYDKEYFKLSSKKIVYRLFGAQKGDF 208

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                 +   V +  F+G ++ +   GL+  +       P    L +I  I  MIP   P
Sbjct: 209 IIHWGNVTNTVFQEFFIGKSLDSFIIGLLCWAGLLFLNAPYPFLLAIIVGIFNMIPYVGP 268

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                  ++L        A    ++  I        L P ++G  + +  +     +  G
Sbjct: 269 FIGAIPVVFLSFFVKPITALWAAIFILILQQFDGNVLGPKILGNRMGIKPISVMLAIFIG 328

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
               G+LG+ +G  +  L+++I  + +
Sbjct: 329 GGLFGILGMLVGVPIFKLLSIIIDQFV 355


>gi|76801595|ref|YP_326603.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76557460|emb|CAI49038.1| predicted transporter (predicted permease) [Natronomonas pharaonis
           DSM 2160]
          Length = 414

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 112/321 (34%), Gaps = 14/321 (4%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            +   VL   ++ +   P+     +         AV  +V+ +  F++PLL +    + E
Sbjct: 34  PYLEYVLLGAVLAYVLLPVQRRLEAHVG--RLVAAVSISVATVLAFLLPLLTVLAIALRE 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              + + +         +  W+ +  G                     +      + I  
Sbjct: 92  AVAVATALQRGVVDVPGIELWVEETTG-----------FEVDLVNLYSTYEGQIASAIQS 140

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I   A R         + +   +  LF   RD   +   L  +         +++ R + 
Sbjct: 141 IVTRAMRVVGGIPSLLIGLTVTVFVLFALLRDRGKLLAWLYRVLPVDDG-VQQELFRELD 199

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +++ ++ +G   +A  + ++LG A  L  VP  V L V T +++++P             
Sbjct: 200 RLMWASVVGNVAVAAIQAVLLGVALVLLDVPVVVFLTVTTFVLSLLPLVGAFGVWVPVSV 259

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L   +   A  L +     + + D   RP L+G    L       G+ GG+   G +GL
Sbjct: 260 YLAVADRPTAAALLVVYGSLVSLSDNYFRPALIGRSGALNPAIIVVGIFGGIVAFGAVGL 319

Query: 329 FIGPVLMALIAVIWKESIMAI 349
           FIGPV++    V         
Sbjct: 320 FIGPVVLGGAKVTLDVFARER 340


>gi|300815320|ref|ZP_07095545.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300907375|ref|ZP_07125023.1| hypothetical protein HMPREF9536_05315 [Escherichia coli MS 84-1]
 gi|301305987|ref|ZP_07212068.1| hypothetical protein HMPREF9347_04606 [Escherichia coli MS 124-1]
 gi|300400884|gb|EFJ84422.1| hypothetical protein HMPREF9536_05315 [Escherichia coli MS 84-1]
 gi|300532212|gb|EFK53274.1| conserved hypothetical protein [Escherichia coli MS 107-1]
 gi|300838770|gb|EFK66530.1| hypothetical protein HMPREF9347_04606 [Escherichia coli MS 124-1]
 gi|315256072|gb|EFU36040.1| permease, PerM family [Escherichia coli MS 85-1]
          Length = 376

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       IA   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----IAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|183598849|ref|ZP_02960342.1| hypothetical protein PROSTU_02280 [Providencia stuartii ATCC 25827]
 gi|188021055|gb|EDU59095.1| hypothetical protein PROSTU_02280 [Providencia stuartii ATCC 25827]
          Length = 371

 Score =  116 bits (291), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 69/344 (20%), Positives = 133/344 (38%), Gaps = 6/344 (1%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
              I+ +I    + L  F    + A ++   +WP+     ++        A++    ++ 
Sbjct: 17  FAFIILMIAACFWVLNPFILGFVWAGMMVIATWPLLLRLEARLWNKRWLAALVMVSLILL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQ 131
           LF++PL  L    +     L+      N   +P   WL+ +P  G      W   ++   
Sbjct: 77  LFVIPLGILIGSIIQNSTPLIELAKSPNSLRLPDLEWLNSVPFVGEKIYYAWHSLVASGG 136

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  +            +    A   G       L ++F  +     Y  G S+   +   
Sbjct: 137 NALLAKVQPYLGQAAGWFLAQAINAGRFMFHLALMLLFSGL----LYLKGESVMLGIRHF 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L          +  + IR+  LG+ + A+ + +V G    L+G+     L V+  I 
Sbjct: 193 AVRLAGIRGDAAVVLAAQSIRAVALGVVVTALIQAIVGGVGLALSGISYAAILTVLLFIC 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +   G  +      I+L   G+   A  L +W A+   +    LRP+L+     LP + 
Sbjct: 253 CVAQLGPLLIMVPSVIWLFWTGDTTWAIILAVWAAVVATMDG-VLRPWLIKMGADLPMVL 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              G++GG+ + G++GLFIGPV++A+   + K  +  +    E 
Sbjct: 312 ILVGVIGGILSFGMIGLFIGPVVLAVSYSLLKAWMNEVAIPNEN 355


>gi|229494234|ref|ZP_04387997.1| integral membrane protein [Rhodococcus erythropolis SK121]
 gi|229318596|gb|EEN84454.1| integral membrane protein [Rhodococcus erythropolis SK121]
          Length = 392

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 107/344 (31%), Gaps = 14/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+ +  + ++   +  L+    PV  AL+      PI            +   ++  +
Sbjct: 25  RLIVIFAGLLVLGYVVLRLETVLIPVGLALLTSALLIPIVDRLQVW-GVPRSAAVIVVLL 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L    + F+    +  + +L  +   +                     +     + 
Sbjct: 84  ASIGLVAGIMTFVVEQFIDGLPQLTDQFTASVTQIQNWLTSGPLHFSEDQIRQAGDSVVK 143

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             QS +              +   A     +  +     +  +  L FF   G  I Q +
Sbjct: 144 SVQSNRE------------SLTSGALTTATVIGEIFTGALLTLFTLIFFLYGGDQIWQFV 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +         +         +A  + + +G+   + GVP  + L  + 
Sbjct: 192 TRIVPTDARRRVRIAGSAGFGSLIGYVRATVAVAAADAIGIGAGLAILGVPLALPLASLV 251

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A IP     ++     +  L+      A  +       + +    ++P L+G  ++L
Sbjct: 252 FIGAFIPIVGAFLTGFLAVLVALVTKGFLTALIVLGIIIGVMQLEAHVMQPLLLGRAVRL 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L     +  G+   G++G  +   ++A++    +  +    +
Sbjct: 312 HPLAVVLAITTGIVLAGIVGGLLAVPIVAVLNTAIRSLLADDPD 355


>gi|114562932|ref|YP_750445.1| hypothetical protein Sfri_1757 [Shewanella frigidimarina NCIMB 400]
 gi|114334225|gb|ABI71607.1| protein of unknown function UPF0118 [Shewanella frigidimarina NCIMB
           400]
          Length = 360

 Score =  116 bits (291), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 63/358 (17%), Positives = 120/358 (33%), Gaps = 11/358 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +PQ I    I+  I ++LYF  G  AP+L AL++ F      +    +   S T  A
Sbjct: 12  RFSDPQAITLMFIIIGIGLALYFGSGLLAPLLVALVLAFLLEWPVAQMS-RLGISRTAAA 70

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            I  V  + L I+    L      +   LV+ +      G+ + R  S       ++   
Sbjct: 71  TIVLVVFLGLMIILTFGLVPSIWRQGVSLVTDLPSMIDKGMIIVREFSADYPQFVSASQL 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +     +               + +    +    L   +  I + + +FFF +D   
Sbjct: 131 DSMMEEINKMLDTQHLID-------LGKQILGYSASLLVLMVYAILVPLLVFFFLKDKEF 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +                +K+   + + I +   G  I  +  G+     + + G+     
Sbjct: 184 LLNGSKRFFP-SNRGLARKVWFEMDQQIFNYIRGKVIEIVIIGVASYIFFAIMGLRYSAL 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPFLV 301
           LGV+T +  +IP       T     +      F+A    L L   I   +    L P L 
Sbjct: 243 LGVLTGLSVLIPYVGATLVTLPIALVAFFQWGFSAEFGYLMLGYGIIQALDGNVLVPLLF 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              + L  +     ++      G+ G+F    L +L+  +        ++ + K  S 
Sbjct: 303 SDAVDLHPVVIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPNNQEQQRVKFDSE 360


>gi|326791162|ref|YP_004308983.1| hypothetical protein Clole_2071 [Clostridium lentocellum DSM 5427]
 gi|326541926|gb|ADZ83785.1| protein of unknown function UPF0118 [Clostridium lentocellum DSM
           5427]
          Length = 419

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 46/369 (12%), Positives = 112/369 (30%), Gaps = 27/369 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE--------------------- 56
             I      +     P++   +I +   PI   + ++                       
Sbjct: 38  AAICKVFGLIYWLLKPLILGFVIAYLLDPIVEFYENRCHKIKGKELFHSKKDQAESDLNH 97

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK-----VVLANQHGIPVPRWLS 111
                +  + T+      I+ L       ++ ++ +        +  +    +     + 
Sbjct: 98  PKRWHMRTVPTLFTFLTVIMVLGLFILIIVMNIEAIAGNFSLLGIKESINRYLAYFENML 157

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           +            +           +         +      +  G+  ++  L+ +   
Sbjct: 158 EGVNRFTNEMGILRGQEGIVQKVYSAINDFVLRLSNQFLNSLTTIGLNTMNLLLAFVIAF 217

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             L    R    + +   +L +     +   +   +  V      G  I A+   ++   
Sbjct: 218 YLLQDKQRCIAVVKKASYTLLKPKIYRHTMVLCHDIDYVFSGYIRGQIIDAMIVAVLTSL 277

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELF 290
           A  +  +   + +GVI  I  +IP   PI    ++I + I   N   A    +   I   
Sbjct: 278 ALTVIQLDFAIIIGVIAGIFNLIPYFGPIVGFILAIIIGILDPNPMKAVYGAIAILIIQQ 337

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I    + P +VG  +KL  +     ++ G    GL+G+ IG  + A I ++    +  + 
Sbjct: 338 IDGWIIVPKVVGECVKLHPVIVLLAILIGGNLFGLMGMLIGVPVAAFIRLVLLRYVTELF 397

Query: 351 ENKEKISSN 359
            + E++   
Sbjct: 398 PDGEEVLEE 406


>gi|108797149|ref|YP_637346.1| hypothetical protein Mmcs_0169 [Mycobacterium sp. MCS]
 gi|119866234|ref|YP_936186.1| hypothetical protein Mkms_0178 [Mycobacterium sp. KMS]
 gi|108767568|gb|ABG06290.1| protein of unknown function UPF0118 [Mycobacterium sp. MCS]
 gi|119692323|gb|ABL89396.1| protein of unknown function UPF0118 [Mycobacterium sp. KMS]
          Length = 381

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 101/343 (29%), Gaps = 14/343 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +L  +  L+    PV  A ++     P       +          +  +
Sbjct: 25  RLLIIFGALVAVLWLVARLEIIVVPVALATMLAALLMPAVDFLDRR-GAPRGGAVALVLL 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +    L F+    +  M  L  +V  +                  W  E       
Sbjct: 84  SGIAVVGGILTFVVSQFVEGMPALGEQVTRSIDGMRR------------WLVEGPLDLSR 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N  + +   A        +     + ++  L F    G +I   +
Sbjct: 132 EQIDNAGNAAIEAVRNNQERLTSGALSTAGTITEIVTGALLVLFTLIFLLHGGRNIFGFI 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +   R     +        ++A+ + + +G+   +  VP  + L  + 
Sbjct: 192 TKVFPPDVRDRVRGAGRAGFHSLIGYVRATFLVALVDAIGIGTGLAIMSVPLALPLASLV 251

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       I  L+   +  A            +    L+P ++G  + +
Sbjct: 252 FLGAFVPLVGAVVTGFLAVIVALLTKGLVYALITLGLILAVQQLEGHVLQPLVMGRAVSI 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L     + GG    G++G  +    +A +    +  +   +
Sbjct: 312 HPLAVVLAIAGGGVLAGIVGALLAVPAVAFLNSAIRVLLARDQ 354


>gi|229916491|ref|YP_002885137.1| sporulation integral membrane protein YtvI [Exiguobacterium sp.
           AT1b]
 gi|229467920|gb|ACQ69692.1| sporulation integral membrane protein YtvI [Exiguobacterium sp.
           AT1b]
          Length = 377

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 113/351 (32%), Gaps = 10/351 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +  F+I   L  L  +  P + AL++   + P+ + F  K         +I+ +
Sbjct: 11  RFVLVVIGFFLITWLLNILFEYTYPFVFALLLSLMTVPLVNFFERKTNMPRALGTLISLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + +  +  +    +        ++    +      + L +       ++ +  +  
Sbjct: 71  IVLSIVVGIITIVIIQLIHYATVAAERLPEQIETLTEFIQRLFNEKIAPLVNDAYESYQQ 130

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                    E  +   G+            +               L ++ +++A FF  
Sbjct: 131 LNPGQTTSLEGGITELGVQLAAAIGVLSRGVASVLQNMLAALPLVLLLVVVIVLAWFFIT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D       L+ L +      ++++   +   +         +      ++     +  V
Sbjct: 191 KDWPVYVNSLNRLNKRKGFKEFEEVMINLKSALFGYVRAQFTLISITFGIVLIGMLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + ++  ++     ++P     +              +      +   I + +      P
Sbjct: 251 DNPLSFALLAGFFDLLPYLGVGTLLIPWAAYAAVTGDWFVAIGLVVLYIIVIVQRNLAEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +VG  I L  L     +  G++  G+LG  +GPVL  L+  ++   +   
Sbjct: 311 KIVGSHIGLNPLIALISIFVGLKLFGVLGFIVGPVLAVLLKAVYNAKVFHY 361


>gi|73663082|ref|YP_301863.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495597|dbj|BAE18918.1| putative permease [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 361

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 119/341 (34%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    +  L+    P+L +  + +   P       K +        +  + ++ +  V +
Sbjct: 29  VFTPFIIILQSVLLPLLLSGFLFYICLPFQKILE-KNKIPRWGSITLIFIGLIIIIGVVI 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            ++      +++ L++++         +  +  D            + L +  + +I   
Sbjct: 88  GYIGPLIAEQIENLINQIPALQHEVQHIINFSLD----------QMERLPNDVTDRINKM 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               ++    +   +  +   F+     +I +   L +  +D       +  L +     
Sbjct: 138 VQSMSDSTANVLSNSLSYLTSFISTLFLLIMVPFFLIYMLKDHERFIPFIAKLFKGERKV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   ++I  G++L   Y + G+   + L +   +  MIP   
Sbjct: 198 FIVDLLKDLNDTLKSYIQGQVTVSIILGIILYIGYSIVGLNYTLLLVMFACVANMIPFLG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  + I  +      + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 258 PWMAFAPAGIIGIIQSPTIFIWVCIITLIAQQLEGNVITPNVMGKSLNIHPLTIIVVILA 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G + + +   L A+I  I +      ++  EK +S+
Sbjct: 318 AGNLGGFVLILVAVPLYAVIKTIVRNVFHYREKIMEKANSD 358


>gi|149183675|ref|ZP_01862089.1| hypothetical protein BSG1_18470 [Bacillus sp. SG-1]
 gi|148848623|gb|EDL62859.1| hypothetical protein BSG1_18470 [Bacillus sp. SG-1]
          Length = 345

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 106/337 (31%), Gaps = 22/337 (6%)

Query: 15  MIMFIILVSLYFLKGF-----------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++  I +   Y L                P L    I +   P+      K         
Sbjct: 5   LLAVITVYVFYLLYPVWHPVLSVLIMAMIPFLLGGFITYLLHPVVEKLF-KAGIHRGIAI 63

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  +         +       + ++K+L     L  +       ++             
Sbjct: 64  LLIYILFFGGLGYAVYKGIPVIIHQLKDLAENAPLYTEQYQRWLDYIQR----------Q 113

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T         ++ +        ++ +  F     +  ++  L    +    F+  +D   
Sbjct: 114 TSTWPDGIQHELETRIERFEEWLNGVVAFILSGVLKIMNSLLLFAIVPFISFYLLKDFPK 173

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +   SL    +        + + + +     G  ++ +  G +   ++WL G+   + 
Sbjct: 174 VKKAATSLTPKKWRNSAGSFFKDLDESLGGYIRGQLLVCLLIGSLAALSFWLFGMKYPLL 233

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG+I  I  +IP   P+     +  +    +      + +      F+    L P +VG 
Sbjct: 234 LGIIVGITNVIPYFGPVIGAVPAAIVASTISNEMIIKVIVIVFALQFLEGNILSPLIVGK 293

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            + +  L     L+ G    G+LGL +   L+A++ V
Sbjct: 294 SLHMHPLFIMGALIIGGEVGGVLGLIVAVPLLAMLKV 330


>gi|322372912|ref|ZP_08047448.1| putative membrane protein [Streptococcus sp. C150]
 gi|321277954|gb|EFX55023.1| putative membrane protein [Streptococcus sp. C150]
          Length = 378

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 111/334 (33%), Gaps = 18/334 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMCLFIVPLLFLF 82
           P L    I F    + S +              +       ++A  ++  +F   +  + 
Sbjct: 41  PFLVGAGIAFVVNILMSFYEKWLVKLVPFTFTHKIKRPVSLLLAFATIGLVFTWVVFTVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+S+   A  + I        +   +      T+      +        + 
Sbjct: 101 PDLIDSINTLISQDRSAINNLINWLLKNKSLQKVIQDFGGVTQVRELINTYSAQLLQQIM 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPAY 199
                F+    S          +++   I+   +       +  Q++ L E     F   
Sbjct: 161 NGLTSFLTSLTS-----LPSTLINLFISIVFSCYVLAGKEKLGNQVNRLVEVYLGRFGKT 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+    R+ F+  ++ A   G +      +   P    + ++    AMIP    
Sbjct: 216 FHYVVGILNNRFRNFFVYQSLEACILGTLCYIGMRIFDFPYAATISILIGFSAMIPVVGA 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L++  ++  A     +  I        + P++VGG   LP +   F +  G
Sbjct: 276 YIGVTIGTILIMTHSVTLALLFIAYVVILQQFEGNLIYPYVVGGSTGLPGIWVIFAITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G+LG+ +   + A +  I K++++  +++K
Sbjct: 336 SALGGILGMLVSVPVAATLYQIVKDNVVKREQDK 369


>gi|307303487|ref|ZP_07583241.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306902878|gb|EFN33470.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 359

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 64/351 (18%), Positives = 125/351 (35%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              +    +   ++  ++V  +    F   +  AL++     P++     +        A
Sbjct: 20  PRRSRTLAILVALVVGLVVCYFLAVPFLPALTWALVLTVMFRPLHRRIEKRLRYPEAAAA 79

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               ++   +  VPL F+    + E  +    V  A + G                +   
Sbjct: 80  ATVAIAAFVV-AVPLTFMAERLVNEAAKGAQIVEEAVRSGT----------WRDALANYP 128

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                       L    +  +   ++  F++ F    +   +  I     LF+F RDG  
Sbjct: 129 RLAPVVVWIETQLDLAGIAGSATSWLTNFSASFVRGSVAQIVDAILTFYFLFYFLRDGQQ 188

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L             ++   V + +++   G   +A  +G + G  +WL G+P+ V 
Sbjct: 189 ALGALKEYSPLSSQE-MNRLFTRVNETVQAVVFGTVAVAAVQGAMGGLIFWLLGLPAPVV 247

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G+   ++A++P     I +   ++ L + G    A  L  WGA  +  +D  L P  VG
Sbjct: 248 WGLAMGLLAVVPVLGAFIVWLPAALSLALGGEWGKALILVAWGAGVVATIDNLLYPIFVG 307

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +KL  L  F  ++GG+   G  GL IGPV   +  ++           +
Sbjct: 308 DRLKLHTLTAFMSMIGGIIVFGSAGLVIGPVAFTVTLLLLDIWRRHNSNPE 358


>gi|222053456|ref|YP_002535818.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
 gi|221562745|gb|ACM18717.1| protein of unknown function UPF0118 [Geobacter sp. FRC-32]
          Length = 360

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 120/328 (36%), Gaps = 7/328 (2%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P+  ALIIG  + P Y+    +        A +  ++V   F++P+  L           
Sbjct: 32  PLAWALIIGIATIPYYNRLTQRIPNRPGRCAGLMVLAVTVCFVLPIAGLITTIAQNAP-- 89

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            +    A           S I   +   +  T  +                     I   
Sbjct: 90  -AWFQTAQGLVRDFATSGSTILHRIPFIDRITSLVEKSGIDVGGYAAKSAGPISGGIVNA 148

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFS-ISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           A+       +    ++  +  LFF YRDG   +S  +            ++    +    
Sbjct: 149 ATNMAKGLAELMFILVVALFILFFVYRDGERVMSTAVTRFAPD--GNNMRRYLSRIRATT 206

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLL 270
            +  +G     + +G++ G  Y+ A VP+ V    +T++ A++P     I +  ++ Y+ 
Sbjct: 207 TAVAVGTLFTCLVQGIIAGIGYFFADVPAPVLFAGLTSVAALVPVVGTAIIWVPLAAYVA 266

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            KG    A  L LW    + + D  +RP  VG    +P      G + GV T+GLLGL +
Sbjct: 267 FKGAYVTAGLLALWCVFMVGLADNAIRPIAVGAKGNVPVPAVVLGAICGVTTIGLLGLIL 326

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISS 358
           GP++ A +  +W E     +    +   
Sbjct: 327 GPIIFATVINLWHELATVERSETAQGEE 354


>gi|227819963|ref|YP_002823934.1| hypothetical protein NGR_b17300 [Sinorhizobium fredii NGR234]
 gi|227338962|gb|ACP23181.1| hypothetical protein NGR_b17300 [Sinorhizobium fredii NGR234]
          Length = 365

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 125/345 (36%), Gaps = 13/345 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I   I+V       F   +  AL++     P++              A    +
Sbjct: 25  ELVILVAIAAGIVVCYLLAVPFLPALTWALVLAIMFHPLHRRIAKDLPFPDIAAAAAVAI 84

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   + +VPL  +    + E       +  A + G                +      L 
Sbjct: 85  AAFVV-VVPLTLVAERLVNEAASGAQIIAEALRTG----------GWREAIANYPRIGLV 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L    L  N    +  F++      +   + ++     LF+F RDG      L
Sbjct: 134 LLWMESQLDLAGLAGNAAALLTNFSASLVRRSVVQIIDVVLTFYFLFYFLRDGREALNVL 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++   V + + +   G   +AI +G + G  +WL G+PS +  G+  
Sbjct: 194 KDYFPLRSSE-MDRLFFRVSETVHAIVFGTFAVAIVQGTLGGLMFWLLGLPSPLLWGLAM 252

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++AM+P     I +   ++ L + G    A  L  WGA  +  VD  L P  VG  +KL
Sbjct: 253 GLLAMVPVLGAFIIWIPAALSLALTGEWGKALILTAWGAGVVATVDNLLYPIFVGDRLKL 312

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + TF  ++GGV   G  GL IGPV   +  ++        +E+
Sbjct: 313 HTVVTFMSMIGGVIVFGPAGLVIGPVTFTVTLLLLDIWCTHHRES 357


>gi|298491879|ref|YP_003722056.1| hypothetical protein Aazo_3225 ['Nostoc azollae' 0708]
 gi|298233797|gb|ADI64933.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 390

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 120/341 (35%), Gaps = 13/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            I     +     A ++ A ++ F      S    +       +A++  +  + + +   
Sbjct: 35  AISAIFNYFHSLIAILVGASVLAFLLNYPVSWMERR-GARREQVAILVFLLALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L++    M                 ++  
Sbjct: 94  VTLFPLALTQAQQLVARLPELIDSGRSQLMILNEKAESMGLP--------INLDAIVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  I        ++ +   L  +  ++  F+  + G  + + L       F  
Sbjct: 146 NDRVKGQLQAIAGQVLNLAVVTVTSLLDFLLTMVLTFYLLQHGGELWESLVEWLPTRFRE 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +    V    ++ F+   I++I     L  ++    VP  +  G+   IMA+IP G 
Sbjct: 206 PFSR---TVRLSFQNFFISQLILSICMASALIPSFLWLKVPYGLLFGLTIGIMALIPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   A +  L+   +++    +     I   I++  + P ++G    L  +     ++ 
Sbjct: 263 SV-GIAATTLLVSLQDVWMGARVLAAAVIVQQILENLIAPRILGSFTGLNPVWVLISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G R  GLLG+ +      +I  I       +  +  + SS+
Sbjct: 322 GARIGGLLGVIVAVPCAVVIKTIISAIRPPVMRHDPEESSS 362


>gi|301057257|ref|ZP_07198383.1| conserved hypothetical protein [delta proteobacterium NaphS2]
 gi|300448622|gb|EFK12261.1| conserved hypothetical protein [delta proteobacterium NaphS2]
          Length = 358

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 124/338 (36%), Gaps = 5/338 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ ++       + F    +  +II    +P Y    S         AV+ T+ ++ L 
Sbjct: 26  LVLLLLFWCFRIAQPFIQIFVWGIIIAIAVFPAYRWMNSALGGRKKIAAVLLTLLLLVLI 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP L      +   ++L + +   +      P  +   P        +    S   +  
Sbjct: 86  VVPCLMFAGSLVETAEKLSASISEGSLRIPKPPETVKSWPAIGQTLHSFWSLSSENLTAA 145

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I            ++   A+  G   + + ++I+   + L     +     +   ++   
Sbjct: 146 IKEIAPHLKFVGVWLLNTAAGAGFALVSFFVAILIAGVLL----ANSEQGVRMARAIAAR 201

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L      +   +    +RS   G+  +A+ + ++ G      GVP      ++  I+A+I
Sbjct: 202 LAGDRGDEFVNMSGATVRSVARGILGVAMIQSILAGLGCLAVGVPGAGLWALLVLILAVI 261

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                I    + +Y         A    +W        D  L+P L+G  + +P L  F 
Sbjct: 262 QLPTFIILAPIVVYAFYTTGTVPAVLFAVWNLFVGGC-DSFLKPLLMGRGVDVPMLVVFI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G +GG    G++GLFIG ++++L   +++  +    + 
Sbjct: 321 GAIGGFILNGIIGLFIGAIILSLGFKLFELWLSDSPKQ 358


>gi|317125541|ref|YP_004099653.1| hypothetical protein Intca_2419 [Intrasporangium calvum DSM 43043]
 gi|315589629|gb|ADU48926.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 427

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 35/306 (11%), Positives = 97/306 (31%), Gaps = 11/306 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  +  + ++ ++  L      ++ +L +     P+      ++         I  + 
Sbjct: 95  GAIGVLTAYAVVQAVGRLDTTITLLVVSLFLTLALNPLVEGLT-RQNMRRGLAVTIVFLG 153

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +F +  + +      E  +L           +  P          W  ++  ++   
Sbjct: 154 LLGVFTLLGMVVVPPVASEGTDLADNAPRMLDDLLRQP----------WVQDVDHRYQVV 203

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +  + ++      N    I       G I      SI+ +++   +F     S+ Q   
Sbjct: 204 QRIQEEINHRIADGNLWAGIFGGVLGAGRIIAAGVFSILTVLVLTLYFLASLPSVKQAGY 263

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L        +  ++  + + + S  +G   +A            L  +P    L V   
Sbjct: 264 ALVPASRRPRFISLAEEIMRRVGSYAIGQVAVAATNAFFAWIMMSLLDLPFAAVLAVAVG 323

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP        +V   +        A  + ++  I   + +  + P ++   + +P 
Sbjct: 324 LLGLIPMIGATLGASVVALVAFFDEPKKALVVIIYFVIYQQLENYAVMPRIMQRTVAVPG 383

Query: 310 LPTFFG 315
             T   
Sbjct: 384 ALTVVA 389


>gi|253581604|ref|ZP_04858829.1| permease [Fusobacterium varium ATCC 27725]
 gi|251836674|gb|EES65209.1| permease [Fusobacterium varium ATCC 27725]
          Length = 374

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/322 (14%), Positives = 103/322 (31%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+  P++ AL I     P+ S   ++ +        I  V V+      +  +       
Sbjct: 39  GYLIPMIYALFISIFLEPLVSKIENRFKLKRWVSVSIVIVLVIIGVAGFVGLILPQLGKS 98

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
            KEL +K+    +      + + D         +  K +       +             
Sbjct: 99  FKELYNKLPYMQEQLGDFIKRVLDYLKEKELLVIGEKQIEENIVNLLKRNIGNLQEFGIS 158

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +      + +    + +     +  L         ++  L  +       Y         
Sbjct: 159 VLLNIMWWTVALSKFFIGFFLAVFILLDKEYFVKFLNNILTIILGKEKGIYMSDFLNQSR 218

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            V+ +   G  I +   G V     +  GVP  +   ++  I  MIP    I   AV+I+
Sbjct: 219 NVLLNYVWGRIIASAFVGAVTFIVLFFTGVPYALLSSLMIGIGNMIPYVGSIVAGAVAIF 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+I         LF+   +   +    + P +V   + +        ++ G   MG +G+
Sbjct: 279 LVILAEPSKIIYLFIAMMVGQAVDGWIVGPRIVSETVGMSTFWVIVAVLIGGSLMGPVGM 338

Query: 329 FIGPVLMALIAVIWKESIMAIK 350
           F G     ++ ++++  +  I 
Sbjct: 339 FFGVPAFGIMKLVYEIQVKKID 360


>gi|256395660|ref|YP_003117224.1| hypothetical protein Caci_6535 [Catenulispora acidiphila DSM 44928]
 gi|256361886|gb|ACU75383.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 394

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 99/341 (29%), Gaps = 14/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++ +    ++         VL +  +  +  PI    +  +      +A +  V   
Sbjct: 66  AGAILAYATAEAILRSAQVLVLVLLSAFLAVSLEPIVVGLVRLRLRRGLAVA-VVLVGFT 124

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L  +      E+  L  ++    Q        L  I                  
Sbjct: 125 AVLGGFLALVIPPVSNEITALTKEIPTWLQEIHDHHSQLGKIEDRYHL------------ 172

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +      F   +    +       G I +    S   +I    +F     ++       
Sbjct: 173 -VAKAKAQFASGDASGKLVSGLLTAGQIIVGAVTSTFIVITLTIYFLVGMPAVRDFGLRF 231

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      ++  +   +    L     +   GL         GVP    LG + AIM
Sbjct: 232 VSARNRPRSADLTNQILLQVGRYMLANLATSALAGLATFIWCMAVGVPYAAVLGFLVAIM 291

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            M+P        A    + +  ++  A    ++  +  F  D  + P  +   +++  + 
Sbjct: 292 DMVPVIGSTVGGAAVSLVALSVSVPTAVASLVFYTLFRFAEDHLINPLTMKYTVRIHPIA 351

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           T   ++     MGL+G  I       I++I +E +   ++ 
Sbjct: 352 TMIAVLVMGTLMGLVGALIAVPTATAISLILQEVVFPKRDQ 392


>gi|239977967|ref|ZP_04700491.1| putative integral membrane protein [Streptomyces albus J1074]
          Length = 346

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 108/347 (31%), Gaps = 14/347 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + +   L  +  +     P++  L++   +WP+     +         A + TV  
Sbjct: 2   LLVAVAVTAALWLVGQMWSVVWPLVVGLLLTTLTWPLARFLRNHSW-PPALAASVVTVFA 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    +  +      E   L   V+   +                WA+          
Sbjct: 61  LVVAAGIVALIAVPVASESGTLADGVIAGVEQLRT------------WAAGPPLNIGDAE 108

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  + +      + +       +      +   +  +  +  +FFF +DG      L  
Sbjct: 109 ITKAMDAGIERLQSSLGATVSTVATGLSTVVHGVVVAVIAVFLMFFFLKDGPRFLPWLTR 168

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++      + +      ++ + + + +G   W+ GVP  + L V+T +
Sbjct: 169 QLPGRLAVDIPTVAERCWNTLGAFIRSQALVGLIDAVFIGLGLWILGVPLVLPLSVLTFV 228

Query: 251 MAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A +P            +  L+   + +A  +     +   +     +P +    + L  
Sbjct: 229 GAFVPIVGAFFAGFVAVLIALVSNGLTDALIVLAIIIVVQQLEGNVFQPMIQSRGLGLHA 288

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                 +  G    G++G  +     ALI VIW+     + E   + 
Sbjct: 289 AVVLLAVTLGGSLAGIVGSLLAVPAAALIGVIWRYIREQLAEPPHEP 335


>gi|94501026|ref|ZP_01307550.1| membrane protein, PerM family protein [Oceanobacter sp. RED65]
 gi|94426773|gb|EAT11757.1| membrane protein, PerM family protein [Oceanobacter sp. RED65]
          Length = 361

 Score =  116 bits (290), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 111/353 (31%), Gaps = 12/353 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
              + + +   +++    V +  +    AP L+++++ +       +   +        +
Sbjct: 14  YFSDEEALFLLLLLIAGFVIILTMGAILAPALASVVLAYLLQGPLLAL-KRLGVGHLAAS 72

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  +  + + +  +L L      ++ +L  ++         +   L +    ++     
Sbjct: 73  VLVFLLFLIVCLAVILVLAPAVWTQITQLFGELPNMLNQMQKLAVVLPERYPDVFDEAQI 132

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +                 +  +P              + +I + I +FFF +DG  
Sbjct: 133 KALGAAMAEEIGRLGQAAVELSLSTLPNLV--------AILIYMILVPILVFFFLKDGDV 184

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +   S+          ++ R + +   +   G  +  +  G V   A+ + GV     
Sbjct: 185 MVRWWVSIMPTK-RILIGRVWREMDQQFANYIRGKVLEIVIVGFVTYIAFAIMGVRYAAL 243

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L ++     +IP       T   + +     G   +   L     I   +    L P L 
Sbjct: 244 LALLVGFSVVIPYIGAAVVTVPVVLIGYFQWGLTSDFYYLVAVYFIIQALDGNVLVPLLF 303

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              + L  +     ++      GL G+F    L  L   +       ++  ++
Sbjct: 304 SEAVNLHPVVIILSVLMFGGLWGLWGVFFAIPLATLFKAVLTAWPRGVRAAQQ 356


>gi|295699388|ref|YP_003607281.1| hypothetical protein BC1002_3752 [Burkholderia sp. CCGE1002]
 gi|295438601|gb|ADG17770.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 364

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 95/347 (27%), Positives = 173/347 (49%), Gaps = 5/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESST 60
           E     +     + + ++L++L+ ++ F   V  A ++    WP+     S       +T
Sbjct: 21  ERQKKQRAASVALYIGLVLLALWVVRDFIVVVAWAAVVAIALWPLLHKVASSPWFRGRTT 80

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            LA + T+ +  L ++P+       + E  +L      A ++GIP+P +++ +P G+   
Sbjct: 81  LLATVFTLVIAVLVLLPVGLGLAQALREAHDLNDWFRSAQENGIPLPDFINRLPFGVQQI 140

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W +      +  +     +K    + +      FG       +   FM++ LF  ++ 
Sbjct: 141 SSWWQA---NLAQPLRGSAAMKGLHSETVMTLGRHFGARAAHAAMVFAFMLVTLFVIFQA 197

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S  L       F      +   +   +R T  G+ ++ +GEGL+LG AY++ GVP 
Sbjct: 198 GPRLSGSLLKAARRGFGDSGADLVAHMGTAVRGTVSGLIVVGVGEGLLLGVAYFVTGVPH 257

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG +TAI AM+P  API F   +++LL++G++  A  L ++GA+ +F+ +  +RP L
Sbjct: 258 AALLGFVTAIAAMLPFCAPIVFGLAALWLLVQGSMVAAAGLLVFGAVVVFVAEHFVRPVL 317

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +G   +LPFL   FG++GG  T GLLG+FIGP LM ++ V+W + + 
Sbjct: 318 IGNSTRLPFLLVLFGILGGAETFGLLGIFIGPALMTVLMVLWTDLVE 364


>gi|297587472|ref|ZP_06946116.1| MFS superfamily major facilitator transporter, macrolide symporter
           [Finegoldia magna ATCC 53516]
 gi|297574161|gb|EFH92881.1| MFS superfamily major facilitator transporter, macrolide symporter
           [Finegoldia magna ATCC 53516]
          Length = 381

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 108/340 (31%), Gaps = 10/340 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------EESSTFLAVIATVSVMCLF 74
           +L       +P +    + F      +   +K                 +I+ V V  + 
Sbjct: 37  ALSTFMAIISPFIIGAALAFVLNMPMNFIENKLFKKWTSKPGLKRAISLLISLVIVSAII 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              ++ +       +K L+  + +  +     P     +        + + H    +   
Sbjct: 97  AFVVILIIPNFFEAIKSLIRGIPVLVEKLRKYPEIAKQLDKIYDTYAITSTHDLVVKLKP 156

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L++  L  + ++ +    S    + L + +S  F I  LF         ++        
Sbjct: 157 YLTKNGL--DILNNVFFGISTVFSVVLSFVVSFTFAIYLLFSKETLRRQFTELTYVFFSG 214

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                     ++  +   S F G  I A   G +     +L  +P+   + V+    A+I
Sbjct: 215 KTAKRIIVFFKVAYEKFYSFFKGQFIEAFMLGFMCFIGMYLLKMPNAATVSVLIGFGALI 274

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I   A+   +++  +   A    ++  +          P +VG  + LP +    
Sbjct: 275 PLVGAILGAALGALIILIESFSKAIMFVIFIIVLQQFDGNVTYPRIVGSSVGLPSIWVLV 334

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +  G    G++G+ I   + A I  +         ++K 
Sbjct: 335 AVTIGAALSGIVGMLIFVPIFATIYELLYRYKEKKLKDKN 374


>gi|239918422|ref|YP_002957980.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|239839629|gb|ACS31426.1| predicted permease [Micrococcus luteus NCTC 2665]
          Length = 438

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 119/345 (34%), Gaps = 20/345 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           R   + P+ ++  + +  +++ + F +      APV   L +   ++P+ +  I +    
Sbjct: 26  RPHRMWPRMLVIVLTLAGLVLVVQFFQGIASIAAPVFLGLNLVIVAYPLQAWLIRR-GLH 84

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A    + ++ +  V    + + G+  + EL        Q  + V  WLS+      
Sbjct: 85  PVLGATTTVLLIVAVMGVFGGMMVWSGLELVAELPKYTDRFQQIVLDVSHWLSERGVTPD 144

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                        S+ + + T    + +  I         + +   + + F+ +      
Sbjct: 145 ------MVSQQLASIDMSAVTGTAVSAVTKIATNVYAVFGLLVTVIMGMFFLAMDSMDVE 198

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           R    +S              +        + +R  ++  T+  +   ++   A  L GV
Sbjct: 199 RRVRLLST---------ARHEFGHALVEFAQGVRRYWVVTTVFGLIVAVLDVIALMLIGV 249

Query: 239 PSHVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  +  GV++ +   +P    I      ++  L  G   +   + +  ++  F++   ++
Sbjct: 250 PLALVWGVLSFLTNYVPNVGFIIGLLPPAVLGLAAGGWSDFLWVVVSYSVLNFVLQSVIQ 309

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P + G  I +    +F  L+     +G LG  +      L   + 
Sbjct: 310 PKVAGDAIGVIPTVSFLSLLFWAWVLGPLGAILALPCTLLAKAVL 354


>gi|25325134|pir||C91169 hypothetical protein ECs4323 [imported] - Escherichia coli  (strain
           O157:H7, substrain RIMD 0509952)
 gi|13363797|dbj|BAB37746.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|209755908|gb|ACI76266.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755910|gb|ACI76267.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755912|gb|ACI76268.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755914|gb|ACI76269.1| hypothetical protein ECs4323 [Escherichia coli]
 gi|209755916|gb|ACI76270.1| hypothetical protein ECs4323 [Escherichia coli]
          Length = 376

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|324014572|gb|EGB83791.1| hypothetical protein HMPREF9533_01419 [Escherichia coli MS 60-1]
          Length = 376

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 110/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPRFNKELTRKLFKLQEMLPFLNLHMSPERILQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 FLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|330863271|emb|CBX73396.1| putative permease perM [Yersinia enterocolitica W22703]
          Length = 338

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 112/331 (33%), Gaps = 12/331 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+A+++ +      +    +   S  +
Sbjct: 10  RRRFTDPQVIALLVILLAGFCILYFFSGILAPLLAAIVLAYLLEWPTARLQ-RIGCSRPW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V    + ++ +  +      +   L+S +           + L      +    
Sbjct: 69  AASIVLVVFGGIALLAVFVVAPTVWQQGNNLLSDMPKMLNKFNAFAQTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + +F+    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRSKLSGMGESVVKFSLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWLEMNQQITNYIRGKVLEMVVVGVATYLVFFVLGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           L    + L  L     ++      G LG  +
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFLGRVL 330


>gi|77465129|ref|YP_354632.1| membrane transporter [Rhodobacter sphaeroides 2.4.1]
 gi|77389547|gb|ABA80731.1| Conserved hypothetical membrane/transport protein [Rhodobacter
           sphaeroides 2.4.1]
          Length = 388

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 15/322 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             YF +    P++  L++  T  P+  +              + T     + +   L   
Sbjct: 50  GFYFARDVVLPLMIGLLLALTFSPVVRALQRIGIAPPITATALITALAAVIAVSAFLLSG 109

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                        V         +   L +    +  S    ++ S   S    SE    
Sbjct: 110 P------------VSDWINQAPRLGDQLRERAQTILDSFEAVRNASEQVSEITDSEDPTV 157

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL-FPAYWK 201
                  P   S           +II  ++   F    G     +L              
Sbjct: 158 QRVAVQTPGILSSAVGSVASILTTIIVTLVLALFLLASGDLFYIKLIEGFPRFGDKKRAL 217

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I   + + +    L +TII  G G+V+G   W  G+PS +   +   ++  +P    I+
Sbjct: 218 RIVYGIERRVSRYLLSVTIINAGLGVVIGLLMWGTGMPSPLVWAMAAFLLNFLPYIGAIA 277

Query: 262 FTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             A+S  +      ++  A  +         I  + + P ++G  ++L  +  F  ++  
Sbjct: 278 GVALSAAVAIVHYDHLTQALLVPALYLTATAIEGQLVTPIVLGRRLELNTVSVFVTVIFW 337

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G+ G  +    +  I V+
Sbjct: 338 GWLWGIPGALVAVPFLVCIKVV 359


>gi|172058311|ref|YP_001814771.1| sporulation integral membrane protein YtvI [Exiguobacterium
           sibiricum 255-15]
 gi|171990832|gb|ACB61754.1| sporulation integral membrane protein YtvI [Exiguobacterium
           sibiricum 255-15]
          Length = 374

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 114/351 (32%), Gaps = 10/351 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   + +F     +  L  F  P + A ++   S P+   F  +   +  + A+++ +
Sbjct: 11  RFIGVILAIFFTGWLIIRLSSFMYPFVFAFLLALFSRPLVDFFQKRLRINRGWGALLSII 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L I  L+ +    +  +  + +++    Q      + L +       ++      S
Sbjct: 71  LMSGLLIGSLVLIIMQLIRGLVFVANQLPAQIQELSLYFQKLYNEKLAPIWNDASEALRS 130

Query: 129 HPQSLKILSETFLKTNGID----------FIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              S +   +  +++ G             +               L ++ +++A FF  
Sbjct: 131 LEPSQQNTVQNSIQSLGSSLASAIGEGSKSVAGMLQTVLATLPSIALILVIVLLAWFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D      +L       + A  + +   +   +         +      ++     + GV
Sbjct: 191 KDWHRYELRLKKYEMLPWFARAESVVTSLRSALFGYIKAQLTLITITFFIVLIGLLIIGV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               A+  I A   ++P     S     I   I                 + +    + P
Sbjct: 251 EHPFAIAFIAAFFDILPYLGTGSVFLPWIAYSIITGDTGLAIGLAILYAIVILQRNIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +VG  I +  +     L  G++  G+ GL +GP++  +I  +    I   
Sbjct: 311 KIVGDNIGIQPITALIALFVGIQVFGVFGLILGPLIAVIIKALHNAQIFHY 361


>gi|332178271|gb|AEE13960.1| protein of unknown function UPF0118 [Thermodesulfobium narugense
           DSM 14796]
          Length = 361

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 113/318 (35%), Gaps = 1/318 (0%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   P++ + + + +++     +++ + +        + L +    E++ +   + +  
Sbjct: 45  AYLIEPLFKTIL-RFQKNRVISLILSYIIIFVFLGSIGIVLIFGLSNELRSIARHLPIYF 103

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
           ++       L                 +     +   +T   +       +    F M  
Sbjct: 104 ENIKNYLDSLQKFLNSFSIPIDIRSSFNGIFLSQEYIQTHPYSLSFSESAKVLKTFFMES 163

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +   +++  + +   F+  D  +I   L +L          ++S  +  V++    G  +
Sbjct: 164 VRIGVNVFIVFMVAAFWIIDFENIKNGLLTLFPPDKRQEIIELSTDIDFVLKRIVRGQFL 223

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           I +  G +   A  +  +   + +GV+   +++IP    +S T  ++ L +  +   +  
Sbjct: 224 ICLINGALTTLALVVLKIQYAILIGVLAGCLSVIPVFGTLSTTLPAVLLGLTQSWIVSLE 283

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +      +     L P ++G   ++  +     LV G +  G+ GL +      ++  
Sbjct: 284 VVIVILCIHWFESYVLSPKIMGKQAQVHPILIILALVSGEQLFGVEGLILAIPATGVLKA 343

Query: 341 IWKESIMAIKENKEKISS 358
           +    +      +++ +S
Sbjct: 344 VVMHYLKKAGHLEQEKNS 361


>gi|322689836|ref|YP_004209570.1| transport protein [Bifidobacterium longum subsp. infantis 157F]
 gi|320461172|dbj|BAJ71792.1| putative transport protein [Bifidobacterium longum subsp. infantis
           157F]
          Length = 469

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/348 (10%), Positives = 108/348 (31%), Gaps = 19/348 (5%)

Query: 9   QGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++   +  I+ +  +     +      ++ +L +     P+  + ++         + 
Sbjct: 17  RALLYVALAVIVFMFCWRSWGDISYLVLDIIISLFLALAVEPLVVALVAH-GWKRGVASA 75

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V V  +  V L       + +M  +V  +                        +  T
Sbjct: 76  VSLVGVAVVVGVLLTLFGNMFVQQMIAMVRGLPAMYGQIREFAD------------QYTT 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    +L +     ++T+ +      A         + L+++ +++  ++    G  +
Sbjct: 124 FKMPEISNLGMEIFNNIQTSWVTDFAGTAMSTVGGLFSFLLNLMTVVMTTYYISAAGPKL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +             +  +  +    I S     +I+A+           +  VP  + L
Sbjct: 184 RRSFCQWLAPNTQRRFLLVWTVAQGQISSFLFSRSILALINATCTAIFLEILHVPYWLPL 243

Query: 245 GVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            +   +++  IP     I      ++         A  + ++  +   I +  L P +  
Sbjct: 244 ALFCGVVSQFIPTVGTYIGGALPVLFAWGNRGWTYAVAVLVFIIVYQQIENLILSPRISQ 303

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             + +     F  ++      G  G F+   + A +  I++      +
Sbjct: 304 RTMDINAAVAFLAVLAFGSLFGAFGAFLALPVTASLQAIFRAYTKRYE 351


>gi|295837692|ref|ZP_06824625.1| integral membrane protein [Streptomyces sp. SPB74]
 gi|197695937|gb|EDY42870.1| integral membrane protein [Streptomyces sp. SPB74]
          Length = 365

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 103/341 (30%), Gaps = 18/341 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +  + +     LK    P+L A++      P+YS  + +     +  A +   +
Sbjct: 16  ALLVTGVAAVGVWLCVELKTAVTPILLAVLGTALLRPLYSLLVRRAHVQRSLAAGLTCAA 75

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+         +    +   ++++  +  A                       W      
Sbjct: 76  VVAAVGGAGYIVTSAIVDNGQQILDSIRSAFDDAAS-----------------WVGAGHT 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +   L                 +   +  + +  ++ +FFF RD       L 
Sbjct: 119 SLDDITHNARQLLNKFGGTAATGVINGLSVVGSFVATAVLALLLMFFFLRDAGRALHALR 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         + ++R   + +     G TIIA+ +   +     +  VP  + LG +  
Sbjct: 179 ELSPGGSSDLVEAMARRAYQAVAGFMHGTTIIALIDATFITIGLLVLRVPGALGLGALVF 238

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP     +S     +  L       A  +         +    L+P +    +++ 
Sbjct: 239 LGAYIPYLGAFLSGAVAILVALADRGFVIALWVLGVVLAVQVLEGHLLQPVVQSRTVQMH 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                  +  G    G+LG+ +   L A    I++E     
Sbjct: 299 PAVVMVTITAGASLAGILGMLLAVPLTAAAFGIFRELRERY 339


>gi|258652641|ref|YP_003201797.1| hypothetical protein Namu_2437 [Nakamurella multipartita DSM 44233]
 gi|258555866|gb|ACV78808.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 386

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 104/352 (29%), Gaps = 13/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      I    +  ++ F   +L A +      P    F+ +     T       V
Sbjct: 35  RILVIVSAWLIAAWVVGVVQHFLFLILLAWLAAIAMEPAIRWFLRR-GVRRTRATAAVAV 93

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + +  ++        +   LV       Q  +               S       +
Sbjct: 94  PVVLIAVGLVVTFEQMLFEQTAALVRSAPDRVQSIVDQLN-----------STFGLNLQA 142

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               + +  E        + +   A  +          ++ + +  F+    G  + Q++
Sbjct: 143 SQIIVTLRLEPDQIQGVANDLALGALGWLGSLASVVFDLVTVAVFTFYIAAAGPRLVQEV 202

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         I  I  +          ++A    +  G  +W  G+P  + L ++ 
Sbjct: 203 AVWLPPERQPILGAIWDIAEQKTGGYVASKIVLAALSAVFHGIFFWAVGLPGWLPLALLA 262

Query: 249 AIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A  +P        A  + + +      A  + L+  +   I    L P +    +++
Sbjct: 263 GITAQFVPVIGTYIGVAAPMIVALADQPITAVWILLFAIVYQQIETYVLTPRISRRTMEV 322

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   +  G    G +G  IG  + A++  + +      +   E  +++
Sbjct: 323 NPAIALAAVFVGAAIWGPIGAIIGVPIAAVVVSVVQTYGRRYELVPELAATD 374


>gi|227496553|ref|ZP_03926833.1| membrane protein [Actinomyces urogenitalis DSM 15434]
 gi|226833968|gb|EEH66351.1| membrane protein [Actinomyces urogenitalis DSM 15434]
          Length = 394

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 107/336 (31%), Gaps = 20/336 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +   ++ I    +YFL+    P   AL +  T  P+ +                  
Sbjct: 17  ETIALTVALLVIGGAGVYFLQDLLGPAFFALTLVITVRPLVAWASRHHVPRPVSAVAAIV 76

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  +            + +LV  +   +     +            A  L TK  
Sbjct: 77  IVYTFVLALFAALGVA-----VAQLVETLPGYSSKFEAIWE---------DAEGLLTKLG 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +L     + + T+ +  + +        F    + +   I+ L F        ++ 
Sbjct: 123 VDQSTLFDQVSSMIDTSRVVSLAQGLLGQLTSFGSLLMIMALTIVFLMFDMSRIEVRAEA 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L   +             + +RS +L  T+  +   ++   A  + GVP  V  GV+
Sbjct: 183 LLRLKPEI-----STALADFARSVRSYWLVSTVFGLIVAVLDVIALGVLGVPMAVTWGVL 237

Query: 248 TAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + I   IP           ++  L+    + A  + +   +  F++   ++P   G  + 
Sbjct: 238 SFITNYIPNIGFFVGLIPPALLALVDSGPWTALWVIVAYVVLNFVIQTLIQPKFTGDAVG 297

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    TF  L+   + +G LG  +   L   +  + 
Sbjct: 298 LNTTTTFLSLMFWSQVIGALGTILAVPLTLFVKAML 333


>gi|331674959|ref|ZP_08375716.1| putative membrane protein [Escherichia coli TA280]
 gi|324009362|gb|EGB78581.1| hypothetical protein HMPREF9532_00949 [Escherichia coli MS 57-2]
 gi|331067868|gb|EGI39266.1| putative membrane protein [Escherichia coli TA280]
          Length = 376

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|239942580|ref|ZP_04694517.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           15998]
 gi|239989041|ref|ZP_04709705.1| putative integral membrane protein [Streptomyces roseosporus NRRL
           11379]
 gi|291446042|ref|ZP_06585432.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
 gi|291348989|gb|EFE75893.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
          Length = 368

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 101/336 (30%), Gaps = 18/336 (5%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  +  LK    PVL AL+      P++   I+++  + +  A +   +++ +       
Sbjct: 33  IWLVVVLKTAVTPVLLALLGTALLGPVHRWLIARR-LNRSLAAGLTCAALVAVVGGAGYI 91

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +    ++V+ +  A Q  +                       +        +   
Sbjct: 92  VVTALVDSGDQIVASLKDAGQWVVDHLE----------------IAGATDVDDLADNAKG 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L                 +      + +  ++  FFF RD         ++         
Sbjct: 136 LVEKFGASAAGGLLSGISLIGSLVATSVLALLLTFFFLRDSDRAVNLAHTVAPRGTGDLV 195

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP- 259
           + + R   + +     G T IA+ + + +     +  VP  V LG +  + A IP     
Sbjct: 196 EAMGRRAFEAVEGFMRGTTFIALIDAVCITVGLLILDVPGAVGLGALVFVGAYIPYLGAF 255

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +S     +  L       A            +    L+P +    +++        L  G
Sbjct: 256 LSGAVAVLVALADRGFVIALWALGVVLAVQVLEGHVLQPMIQSRTVQMHPAMIMIALTAG 315

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               GLLG+ +   L A    +  E     +    +
Sbjct: 316 ASVAGLLGMLLAVPLCAAAFGVLGELRGGGRSGPPE 351


>gi|302870180|ref|YP_003838817.1| hypothetical protein Micau_5736 [Micromonospora aurantiaca ATCC
           27029]
 gi|302573039|gb|ADL49241.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 455

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 103/349 (29%), Gaps = 18/349 (5%)

Query: 12  MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++ I+  +L      +     P+  AL++     P     +  +    +    +  
Sbjct: 110 WRLIVIGIVTWALLRIVGTISIVIIPLTVALLLSALLAPAVGWLLRAR-LPRSLATAVVL 168

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  +   +  L  +    +  + EL  K     +                W         
Sbjct: 169 VGGLAAVVGTLTLVVNEFIKGVPELSQKSSEGVRQIQD------------WFKTGPLHLS 216

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +  I           +     A        +     + ++ A FFF RDG +I + 
Sbjct: 217 DSQLNRYIDEAQNWINGNTERFTSGAISTAATLAEVLTGTVLVLFATFFFLRDGNNIWRF 276

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L             R     + +      ++A  + + +G    L  +P    L  +
Sbjct: 277 LVRLLPVAARWKVDDAGRASWATLGAYVRATVLVAFIDAVGIGIFLVLFDIPFAFPLAAL 336

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP     +S     +  L+      A  +         +    L+P ++G  + 
Sbjct: 337 VFLGAFIPIVGAFLSGVVAVLVALVDSGPVTALIILGAVIGVQQVEGHVLQPLIMGRAVA 396

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  L    G+  GV   G+ G  +   L+A++    +        +   
Sbjct: 397 IHPLAVIIGIAAGVVLAGIAGALVAVPLIAVLNTAVRRLAARTVPDTPP 445


>gi|154483895|ref|ZP_02026343.1| hypothetical protein EUBVEN_01600 [Eubacterium ventriosum ATCC
           27560]
 gi|149735386|gb|EDM51272.1| hypothetical protein EUBVEN_01600 [Eubacterium ventriosum ATCC
           27560]
          Length = 415

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 118/341 (34%), Gaps = 18/341 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFI----------SKKEESSTFLAVIATVSVMCLFIVPLLF 80
            +P L  ++I F   P+ S                  +       + V V+   +V +++
Sbjct: 51  MSPFLIGILIAFLINPLVSWLHHTVFEKWLYVKNNVLAHLLAITFSYVLVIVFLVVGIIY 110

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  + +L+ K+       I     ++     +    L     +   +++     F
Sbjct: 111 IVPEIIDSLTQLLDKLPEWGDALISYINTIAAKHPELQLDYLIKSISNADSTIQEFLGGF 170

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +       +            ++ ++II  I  L         I + + ++ +       
Sbjct: 171 ISKLTTTIVVTGV-SIIKFVFNFIVAIIVSIYLLIDKKMQSRGIKRTIYAIFDEERADKI 229

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL---AGVPS----HVALGVITAIMAM 253
             + +    +  + F G  I ++  G +   +  +    GVP      + +G++  I  M
Sbjct: 230 CAVIKRSIHIFSNFFDGKMIDSLIIGALTFVSMMIISLFGVPGFSNCALLVGIVVGITNM 289

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      SI LL   ++ +A    +   I   +    + P ++G    L  L   
Sbjct: 290 IPYFGPFLGGIPSILLLCIYSLNSALIFAILIIIIQQLDGNLIGPKILGNSTGLRPLWII 349

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           F +  G    G+ G+ +G   +A+IA + ++ +    E K 
Sbjct: 350 FAITLGGWIAGIPGMLLGVPCVAVIAGLLEDWVNERLEAKN 390


>gi|71909670|ref|YP_287257.1| hypothetical protein Daro_4061 [Dechloromonas aromatica RCB]
 gi|71849291|gb|AAZ48787.1| Protein of unknown function UPF0118 [Dechloromonas aromatica RCB]
          Length = 351

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 72/335 (21%), Positives = 137/335 (40%), Gaps = 3/335 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCL 73
           +++ +I+  +  L  F   VL A ++   +W  Y    + +     T  A + T++++ +
Sbjct: 15  LVVLLIIGCITVLLPFIGAVLFAFVVWMCTWRFYAEKLLPRLGGRDTLGASLMTLALVLV 74

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++P++FL          L+  +    + G  +P         +           H  + 
Sbjct: 75  TLLPMIFLAGSLANGTDNLIDFIKPYVEQG--LPANPPAWLSALPFFGTEIDSTWHRLAS 132

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +    +F    G I  +  L +  ++   FF YRDG +IS  L     
Sbjct: 133 NREELNATVRQLVAPARQFVLALGGIAANGLLQLALVLFVTFFLYRDGAAISHALYVGAR 192

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L     + +       +    LG+   A  +G V    + +AGVP  + LG  T  ++M
Sbjct: 193 KLGGDLGENMLDKARGTVVGVMLGIVGTAAAQGTVAMIGFLIAGVPQAMLLGFATFFLSM 252

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP G P+ +   + +L   G    A  + ++G   +  +D  ++P L+     L  L   
Sbjct: 253 IPVGPPLIWGGAAAWLYSDGQTGWAIFMVIYGLFGISSIDNFVKPILIAYGAGLSILLIA 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            G++GGV   G +G+F+GPVL+AL  ++ +  I  
Sbjct: 313 LGVLGGVLVFGFIGIFLGPVLLALGDMLLQRWIRE 347


>gi|56750445|ref|YP_171146.1| hypothetical protein syc0436_d [Synechococcus elongatus PCC 6301]
 gi|81299922|ref|YP_400130.1| hypothetical protein Synpcc7942_1113 [Synechococcus elongatus PCC
           7942]
 gi|56685404|dbj|BAD78626.1| hypothetical protein [Synechococcus elongatus PCC 6301]
 gi|81168803|gb|ABB57143.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 363

 Score =  115 bits (289), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 135/357 (37%), Gaps = 11/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   L    ++  + + +IL+ L+ L+G    ++SA+++  +  PI +     +      
Sbjct: 6   RRISLTTDSLLLIVGLSLILLMLWQLRGLILILMSAIVLAASIAPIVNQLEQWR-LPRWL 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++A   ++ +     L +    + +++ L+ ++    +    +   +++      +  
Sbjct: 65  GVLVAYGGLLAILTGASLLVGPLVISQIQTLLRQLPNLVERVELLSIDIAEQLDLQDSPL 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L         +  ++       N    + R +       L    S++  ++   +   D 
Sbjct: 125 LPQLVNPQEVAGWVI-------NTSQQLLRQSYGITRGILGGFFSVVLGLLLSSYLVADS 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PS 240
            ++ +    L    +      +   V + + +   G  ++++  G+ +       G+   
Sbjct: 178 KTLGRGFVRLFAAPWDDRLAALLGPVGQRMGAYIRGRVLVSLLLGIAIALGLRTLGLGDY 237

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG I     +IP   P      +++  L    + +    + L   I   +    L P
Sbjct: 238 AIGLGAIAGFTNLIPFLGPFLGAIPALFVALAQGDSAWLFLWVLLLFVIIQNLESYVLDP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            LVG  + +  L     ++GGV+ +G++G  I P  +A  A++ +   +  K+  ++
Sbjct: 298 LLVGAAVGIHPLYQLLAVLGGVQLLGIVGAVIAPPWIAGGALLLERLYLQPKDLAKQ 354


>gi|329115125|ref|ZP_08243880.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
 gi|326695568|gb|EGE47254.1| UPF0118 membrane protein YrrI [Acetobacter pomorum DM001]
          Length = 345

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/346 (8%), Positives = 98/346 (28%), Gaps = 7/346 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + +    + +         V ++ ++                       ++  +
Sbjct: 6   RLAVMVVTVTAAGLFVSSGGAVVMVVFASALVAVVLHAAARIISRLLHIPQWLSVMLFVL 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++    + +        +++  L   +             L ++            H  
Sbjct: 66  VLVGALSLVVHVSGPELTVQLSHLHEAL-------TSERDALHNMLDSNPLGHAVLDHFP 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 ++ +    + G        +           +++ +IIA  +F       +  +
Sbjct: 119 RFLGGNMVPDGRAGSEGGMDFAGSMTNVLTSTFGSVGTMVVIIIAGVYFALSPHLYANGI 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    + +  + +       + +   G  +     G++  S   L G+P  + LG++ 
Sbjct: 179 LRITPVAYRSTMRTVLLTTGHALTAWVAGQMLDMTVVGMLTWSGLSLLGMPLALPLGLVA 238

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +   +P          ++ + +      A  +    A         + PF+    +++P
Sbjct: 239 GLANFVPYLGTFIGAVPALLIALSVGPREAMMVAGLYAAIQTFEGYVMSPFIQKRAVRMP 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              T          +G+ G      + A++  +       +  N+E
Sbjct: 299 PALTILSQTIFGAFLGMWGFIFASPITAVLLAVASRLSAPLPPNEE 344


>gi|118468766|ref|YP_889482.1| hypothetical protein MSMEG_5237 [Mycobacterium smegmatis str. MC2
           155]
 gi|118170053|gb|ABK70949.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
           155]
          Length = 395

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 125/349 (35%), Gaps = 3/349 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +  +  + +  +L+  YFL+ FF  ++ A +  +   P+Y   + +   +S   
Sbjct: 4   QFTTTQKRALAVVTVLALLLGAYFLRTFFVLIVMAAVGAYLFSPLYQRLLRRF--NSGIA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  ++ + + I+P+  + +  ++++ ++V+ V                +      ++ 
Sbjct: 62  VTLTVLAALLMVIIPVSLIVFLAIVQVSQMVNTVSAWVADTDLSTLGDRTLQFINSTADR 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                       +       +  +        +  +  L   L+   + + +F       
Sbjct: 122 VPFLDIDVTPESLRDAIVTVSQRVGEWLLGVLQGALGGLAGALTASIIFLYVFISLLVNS 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L      L              +++ T  G  +IA+ +G+    + ++AG  +  
Sbjct: 182 EKVTTLVRQLNPLGEEITDLYLAKTAAMVKGTVKGQFVIALAQGISGAISIYIAGFHNGF 241

Query: 243 ALG-VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            +  ++   +++IP G  I      I ++  GN      +  +  + +  +D  LRP LV
Sbjct: 242 FVFAILLTALSVIPLGGGIVTIPFGIGMMFFGNTIGGIFIVAFHILVVTNIDNVLRPILV 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +L        +  G+   G  GL IGPVLM +I       +   K
Sbjct: 302 PKAARLDAALMLLAVFAGIAMFGFFGLVIGPVLMIIIVTTISVYLAVYK 350


>gi|24374447|ref|NP_718490.1| hypothetical protein SO_2920 [Shewanella oneidensis MR-1]
 gi|24349024|gb|AAN55934.1|AE015731_4 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 368

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  I     P        +         +A +
Sbjct: 12  KGFAVMAFVVIILAGIKAASPIVVPFVLSCFIAVICNPAIGLMTKYRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +MC  ++  L+L       + E   ++       +    W+      +       + L+
Sbjct: 67  LLMCFIVLMGLWLASLVGSSINEFSKQLPQYRNQLVEQFSWVLHKLQALNIQISKEQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     QQ+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEASSLPKKLHLALDDPDMRLQQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  GL++G      GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATGLIVGVGLAFIGVDYALLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    +       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTTMLYIGANMVMGNVVEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|227883620|ref|ZP_04001425.1| membrane protein [Escherichia coli 83972]
 gi|300985174|ref|ZP_07177311.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|300987373|ref|ZP_07178181.1| hypothetical protein HMPREF9553_03226 [Escherichia coli MS 200-1]
 gi|301050301|ref|ZP_07197190.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|227839499|gb|EEJ49965.1| membrane protein [Escherichia coli 83972]
 gi|300297930|gb|EFJ54315.1| conserved hypothetical protein [Escherichia coli MS 185-1]
 gi|300306241|gb|EFJ60761.1| hypothetical protein HMPREF9553_03226 [Escherichia coli MS 200-1]
 gi|300408203|gb|EFJ91741.1| conserved hypothetical protein [Escherichia coli MS 45-1]
 gi|315291775|gb|EFU51131.1| conserved hypothetical protein [Escherichia coli MS 153-1]
 gi|315295956|gb|EFU55265.1| conserved hypothetical protein [Escherichia coli MS 16-3]
          Length = 376

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPRFNKELTRKLFKLQEMLPFLNLHMSPERILQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|225390466|ref|ZP_03760190.1| hypothetical protein CLOSTASPAR_04220 [Clostridium asparagiforme
           DSM 15981]
 gi|225043477|gb|EEG53723.1| hypothetical protein CLOSTASPAR_04220 [Clostridium asparagiforme
           DSM 15981]
          Length = 372

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/333 (14%), Positives = 104/333 (31%), Gaps = 3/333 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +   + + I  V L +      P ++A +I +          ++       +A++A +
Sbjct: 22  NFLYYAIWLAIAFVILRYGLPMLTPFVAAFVIAYLLNTPICFAANRLRLPRKAMAILAVL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
              C     +  LF       + L S +     H I                 +    + 
Sbjct: 82  LFYCTVGSLIALLFIKLFSSGRVLFSNLPAIYSHYIEPVFAAVFSSIEQTVLRMDPSLIG 141

Query: 129 HPQSL---KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + L      S   + ++       + S          + ++ MII  FF   D   ++
Sbjct: 142 TMEELEGHFAQSAGQMVSSLSMDAVGWISGIASSLPGLFIELLLMIITTFFIAADYDKLT 201

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                         +  I   V   +        +I     + L     L GV + V + 
Sbjct: 202 GFCLRQMGEKPKGIFLNIQSYVVGTLFVCIRSYALIMSITFVELAVGLTLIGVKNSVLIA 261

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + A+  ++P           + +             L   + + ++   + P +VG  I
Sbjct: 262 FVIAVFDILPVLGTGGIMIPWMVITAVMGNPRLAIGLLVVYLVITVIRNIIEPKIVGSQI 321

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L  + T   +  G +  G+LGLF  P+ ++L+
Sbjct: 322 GLHPVVTLVSMFAGAQLFGVLGLFGFPIGLSLL 354


>gi|42520946|ref|NP_966861.1| hypothetical protein WD1144 [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|42410687|gb|AAS14795.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 354

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 124/350 (35%), Gaps = 3/350 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + I    I+  I+  L+ ++    P L ++II +   P+   F   +    +   + 
Sbjct: 1   MQKRHITICFILLFIIGMLFLMRPMIFPCLISIIIAYLFNPLVVKFEKYR-IPRSCSVIF 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++  FI+ + F+     +++  +++ +V                   M   +    
Sbjct: 60  IILILLIAFILVITFVLPIIYVQITSILNFLVSKVPSLKFKVIPSVLEFLNMKIEDSLFD 119

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HLS   +    +      N +D    F  +      +    ++   +  F+  RD   I 
Sbjct: 120 HLSKNLAENYSNYVSYFMNALDIASNFIIQVLSSSFNTVSLMVITPVVFFYILRDWPLII 179

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++   L    +          V  +I +   G   + I   +    +  + G+   + +G
Sbjct: 180 EKASKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEHSIVIG 239

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +++ ++  IP   P+ +T +     I      F +  + L   +   I    L P L+G 
Sbjct: 240 ILSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVPLLIGK 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + +       G+       G  G+ +   ++A+  V  + +I    +++
Sbjct: 300 KVHIHPTVIILGITICASYFGFTGILLFIPIIAMFNVSVEYAINKYFKSE 349


>gi|317473090|ref|ZP_07932389.1| sporulation integral membrane protein YtvI [Anaerostipes sp.
           3_2_56FAA]
 gi|316899428|gb|EFV21443.1| sporulation integral membrane protein YtvI [Anaerostipes sp.
           3_2_56FAA]
          Length = 381

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 108/336 (32%), Gaps = 2/336 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F+++  L    GF  P ++A I+   + P+ +    K      F + +  ++V+   I 
Sbjct: 10  AFLLIFVLPKCIGFLWPFVAAWIVAMLAHPVIAFLEDKISLPKRFGSALIIIAVIAGLIA 69

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLK 134
            + F+      ++    + +    +        L +  +                     
Sbjct: 70  LISFIVSQLAAQIVGFAANLPDLRETVQTQLMNLKEQAVHLLDSLPYGMGVKFDTMLGST 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                   +   ++    +           +  + M  A + F  D   I Q  +     
Sbjct: 130 DKVLDKAVSAIGNYGMEHSGNVAKGMTSGFIGTVVMFFASYLFIVDKDKIVQGYEKHVPK 189

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +              V+ S       I +    +L   + LAG+     L V+ AI+ ++
Sbjct: 190 MVRHKIGIFYHNTLGVLASYCWAQVKIMVIIVAILWIGFILAGISYAFFLAVVIAILDVL 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P     +         I         + L   +   +  + L+P ++G  + +  L T F
Sbjct: 250 PILGTGTAIIPWALYKILTGDIKTAIILLIIYVICLVTKQVLQPKMMGDSMGISPLATLF 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +  G++  G+ G+ +  +L   +  ++K  I   K
Sbjct: 310 LIYIGLKLSGIGGMLLALILGIFVYNLYKLGIFDRK 345


>gi|167762104|ref|ZP_02434231.1| hypothetical protein BACSTE_00455 [Bacteroides stercoris ATCC
           43183]
 gi|167700063|gb|EDS16642.1| hypothetical protein BACSTE_00455 [Bacteroides stercoris ATCC
           43183]
          Length = 374

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 105/335 (31%), Gaps = 11/335 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFL 81
            L  L     P   A +I +  +P+ + F  K +          A ++++ +       L
Sbjct: 27  LLKRLSSVLLPFFIAWLIAYLVYPLVTFFQYKLKLRNRIVSIFCALLTLLIVGAGAFYLL 86

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E   + + +V    HG       + +   +  +              +L     
Sbjct: 87  VPPMIQECGRVQTLLVQYFSHGTYNSNVPTSLSDFLRDNIDVKFITELFNKENLLDALKE 146

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +   +                +++ + F   D  SI++    L    + ++  
Sbjct: 147 AVPRLWSLLSDSVDLLFSVFTIF----IILLYVIFILLDYESIAEGWTHLVPMKYRSFVV 202

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I   V   +   F G   +A+  G++    + +   P  + LG+    + M+P    I 
Sbjct: 203 GILNDVKVGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLFIGALNMVPYLQIIG 262

Query: 262 FTAVSIYLL----IKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                I  +      G+ F            +   I D  + P ++G    L        
Sbjct: 263 LVPTIILAILKASDTGDNFWIIIASAMAVFIVVQTIQDGFIVPRVMGKITGLNPAIILLS 322

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L      MG+LG+ I   L  L+   ++  I+  +
Sbjct: 323 LSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINRE 357


>gi|320539515|ref|ZP_08039182.1| putative inner membrane protein [Serratia symbiotica str. Tucson]
 gi|320030368|gb|EFW12380.1| putative inner membrane protein [Serratia symbiotica str. Tucson]
          Length = 366

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 137/347 (39%), Gaps = 6/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L         I  +I+ S + ++ F   +  A ++   +WP+            +  
Sbjct: 7   RYDLPRIIFGVLFIATMIIASFWVIQPFILSLAWAAMVVIATWPLLIKLQKLLWGRRSLA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            +  T+ ++ LFI+P+  +    +     +++      +  +P   WL  +P  G     
Sbjct: 67  VMAMTLLLILLFILPISLMIGSLVDNSGPVIAWASTLGKLHMPEFVWLQSLPMFGDKIYN 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +   ++   +  +            +    A+  G + L   L ++F +I     Y  G
Sbjct: 127 SYHALVNAGGAALLAKMQPYFGQTATWFVAQAAHIGRLLLHCTLMLLFSVI----LYARG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  +      L          +  + IR+  LG+ + A+ + ++ G    L+G+P+ 
Sbjct: 183 EQVALGIRHFAVRLGAERGDAAVLLGGQAIRAVALGVVVTALVQSVLGGIGLALSGIPAA 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I  +   G  +      I+L   G+   AT L +W  +   + D  LRP L+
Sbjct: 243 TWLTVLIFICCVAQLGPLLVLVPAIIWLYWSGDTTWATVLVIWSCVVATL-DNVLRPMLI 301

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                LP L    G++GG+   GL+GLFIGPV++A+   +    +  
Sbjct: 302 RMGADLPTLLILLGVIGGLLAFGLIGLFIGPVVLAVSYRLLTAWMDE 348


>gi|302542836|ref|ZP_07295178.1| integral membrane protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302460454|gb|EFL23547.1| integral membrane protein [Streptomyces himastatinicus ATCC 53653]
          Length = 474

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 92/309 (29%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++++  +  ++        AL+I     P  +     +         I  +
Sbjct: 114 RLLVLAGTVYVLMQVISSIQLVVFSFTVALLITALLEPTVTRL-RLRGVPRGLATTITFI 172

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  + + F+ +  M  + EL  K+                     W          
Sbjct: 173 GGFIIMGLVVWFVVWQVMENVDELSDKLQDGIDDLRR------------WLLHSPFHVTE 220

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    S         + I         + ++    I+  + +  F   DG  I    
Sbjct: 221 KQINHIAKSLREAVGANTEEITSAGLEGVTVVVEVLTGILLTMFSTLFLLYDGPRIWGWT 280

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                   + +   G  I+A+ + + +G   +   VP  V L V  
Sbjct: 281 LGLVPAAARPGVAGAGPRAWATLTAYVRGTVIVALIDAIFIGVGLFFLDVPMAVPLAVFI 340

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +F A  + +       I    L+PF++G  +++
Sbjct: 341 FLFAFIPLVGAVVSGALAVMVALVTQGVFTAGMVLVVVLAVQQIEGHVLQPFILGRAVRV 400

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 401 HPLAVVLSV 409


>gi|300898822|ref|ZP_07117127.1| conserved hypothetical protein [Escherichia coli MS 198-1]
 gi|300357548|gb|EFJ73418.1| conserved hypothetical protein [Escherichia coli MS 198-1]
          Length = 376

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|42523150|ref|NP_968530.1| putative permease [Bdellovibrio bacteriovorus HD100]
 gi|39575355|emb|CAE79523.1| putative permease [Bdellovibrio bacteriovorus HD100]
          Length = 371

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 138/354 (38%), Gaps = 8/354 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M  T    + ++  + M ++    L+ L  F   ++ A +I   +W        +     
Sbjct: 1   MAPTTDLTKTLLSVLFMGLLAAISLWVLLPFLPAMIWAAMIFIATWSTLLKLQHRFNNKR 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-NQHGIPVPRWLSDIPG-GM 117
               +   + +  L I+PL    +  +     +VS +    N    P P WL D P  G 
Sbjct: 61  FPAVLTMALLMTALVIIPLTAALFSLISNRHVIVSGLQDLANTQLPPAPDWLEDAPLLGP 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +  W +  +      I           ++I        M+ +   L+II   I    F
Sbjct: 121 RIAARWNELAATAPQDLIERAKPYIHQAFEWIVASVGSITMLVVHCILTIIIASI----F 176

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           Y +G  I+Q   +L   L     ++  ++  + +R+  +G+   A+ +  + G    LAG
Sbjct: 177 YSNGEKIAQACRTLTRRLAGTRGEEALQLAAQSVRAVAMGIVGTALIQTALGGLGAGLAG 236

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           VP    L  +  I  ++  G  +       +L  +      T L  W      ++D  +R
Sbjct: 237 VPHAGLLTAVILIFCVVQLGPLLPLLGAVAWLYSQEQNTAGTILLGWAVAV-GLMDGFVR 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P L+     LP +    G++GG+ + G++GLFIGPV++A+   +    +    E
Sbjct: 296 PILIKRGADLPAVLITVGVLGGMISFGIVGLFIGPVVLAVTLRLLSAWMTDNSE 349


>gi|257469202|ref|ZP_05633296.1| permease [Fusobacterium ulcerans ATCC 49185]
          Length = 376

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/322 (15%), Positives = 106/322 (32%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+  P++ A+ I     P+ S    + +        I  V V+      +  +       
Sbjct: 39  GYLIPMIYAVFISIFLEPLVSKIEQRFKLERWVAVAIVIVLVIIGVAGFVGLILPQLGKS 98

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
            KEL +K+    +    + + + D         +  K +       +             
Sbjct: 99  FKELYNKLPHMQEQLGSLIKRVLDYLKEKELLVIGEKQIEDNIISLLKRNIGNLQEFGIS 158

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +      + +    + +     +  L         I   L  +       Y         
Sbjct: 159 VLLNIVWWTIALSKFFIGFFLAVFILLDKEYFIRFIKNILAIIFGKEKGMYLSDFLNQSR 218

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            V+ +   G  I +   G++     +LAGVP  +   ++  +  MIP    I   A++I+
Sbjct: 219 NVLLNYVWGRIIASAFVGVITFVVLFLAGVPYALLSSLMIGMGNMIPYVGSIVAGAIAIF 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+I         LFL   I   +    + P +V   + +        ++ G   MG +G+
Sbjct: 279 LVILAEPSKIGYLFLAMIIGQTVDGWIVGPKIVSETVGMSTFWVIVAVLIGGSVMGPMGM 338

Query: 329 FIGPVLMALIAVIWKESIMAIK 350
           F G     +I +I++  +  I+
Sbjct: 339 FFGVPAFGIIKLIYETQLKKIE 360


>gi|227822502|ref|YP_002826474.1| hypothetical protein NGR_c19580 [Sinorhizobium fredii NGR234]
 gi|227341503|gb|ACP25721.1| conserved hypothetical protein [Sinorhizobium fredii NGR234]
          Length = 370

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 124/352 (35%), Gaps = 5/352 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + +   ++      SL  +  F    + A I+    +P++ +  +         A  
Sbjct: 22  RVTEFLRLGVLALFAYWSLTLVAPFAIIAIWAGILAVALYPVFRALAALFGGRPRLAAAA 81

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            TV  + +   PL  +       ++ +++K+          P  + D P           
Sbjct: 82  ITVVALAVIAGPLAAIALSFAEAVQAVLAKLASGTLVVPAPPDAVRDWPLIGNWLHAAWA 141

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +             +    +  G+  + + +S+I       F +R G  + 
Sbjct: 142 QASGNLEATLQRLAPSLLQAGGTVLGKIAGIGVDLIGFIVSVIIAG----FLFRPGPRLG 197

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L      +          +    IR+   G+  +A+ + L+ G A+ L G+P+   L 
Sbjct: 198 EGLKLFARRVAGERGAGFVDLAGATIRNVARGVIGVALLQALLAGLAFSLFGIPAASVLA 257

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
               I  ++    P                  AT       + + ++D  L+P LV   +
Sbjct: 258 FAVLIFCIMQI-GPAPVLLPVAIWAWTAMETRATLGLTLILVLIGLIDNVLKPVLVARGL 316

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           K P L    G++GG  + GL+GLF+GP+++ +   +    + ++   +++  
Sbjct: 317 KTPMLVILAGVIGGTLSYGLIGLFLGPIVLGVFYDLVVAWMRSVPRPEDETK 368


>gi|302544660|ref|ZP_07297002.1| integral membrane protein [Streptomyces hygroscopicus ATCC 53653]
 gi|302462278|gb|EFL25371.1| integral membrane protein [Streptomyces himastatinicus ATCC 53653]
          Length = 369

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 104/350 (29%), Gaps = 14/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +  + L  L  +     P++  L++   +WP+               A   TV 
Sbjct: 31  VLLVLGMTAVALWFLGQMWSIVWPLIIGLLLTTLTWPLTRFLRGH-GWPPAVAASAVTVL 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +    +  +      +  ELV  V                     WA+         
Sbjct: 90  FLLVATGVVALIAVPVASQSGELVDGVTQGMHKVRE------------WAAGPPLNIDDA 137

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +    S           +           +   ++ +  +  +FFF +DG      L 
Sbjct: 138 QIAQATDSAAARLQKSASSMVTTVVTGVNAVVGGLVTAVLALFLMFFFLKDGPRFLPWLA 197

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        ++      + +      ++ + + + +G    + GVP  + L V+T 
Sbjct: 198 RQLPGRLATDVPTVAARAWDTLGAFVRSQALVGLLDAVFIGLGLLILGVPLVLPLAVLTF 257

Query: 250 IMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A +P    +       +  ++     +A        +   +     +P +    + L 
Sbjct: 258 VSAFVPIVGALFAGFVAVLIAMVANGPMDALITLAIIVVVQQLEGNVFQPMIQSRGLGLH 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
                  +  G    G++G  +   + ALIAVIW      + +  ++   
Sbjct: 318 AAVILLAVTLGASLAGVVGSLLAVPVAALIAVIWNYLREQLSDPLQEPEH 367


>gi|239907728|ref|YP_002954469.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239797594|dbj|BAH76583.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 428

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 103/341 (30%), Gaps = 13/341 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   + +  W   F ++    +  G F  V +  I+ F          ++     +  
Sbjct: 66  QLLRTNKTLAIWAAFFGLVWLTSY-YGLFGLVFTTYILCFLFSGPIEQLAARTRWPRSLW 124

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                +  + + +  +  +      E    + K+    +         + +   M A   
Sbjct: 125 TTAIYLIFLAVVLTIISSVVPKIGTESAAFLKKLPDTLETLRKHLDQWAWLAPDMAAPIS 184

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K     ++L  +    L    ++ + +  +      L    S + M         D  
Sbjct: 185 KVKDYLALEALVGVKAETLFALAVNSLNQVTTYVSTFLLGTLFSFLIM--------LDFP 236

Query: 183 SISQQLDSLGEHLFPAYWK---KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +  +  SL +      +    +       V+   F    +IA    ++     +L G+ 
Sbjct: 237 KLRAKTISLRDSRLRDIYDVTARSVVRFAIVVGMGFRAQMMIAGVNTVLTALGMYLLGIQ 296

Query: 240 SHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               L  +     +IP     IS   + +  +      +A    +   +   I    L P
Sbjct: 297 PVGLLSTVVFFCGLIPVLGTFISSAPIVLVAVNTVGPSHALWAIVMIIVVHTIETYILNP 356

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            +V    K+  L T   L  G +  GL G+ +G  +   I 
Sbjct: 357 RIVAAMFKISPLVTLIILYVGHKLFGLWGMVLGVPVSVFIF 397


>gi|221369132|ref|YP_002520228.1| hypothetical protein RSKD131_3295 [Rhodobacter sphaeroides KD131]
 gi|221162184|gb|ACM03155.1| Hypothetical Protein RSKD131_3295 [Rhodobacter sphaeroides KD131]
          Length = 389

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 100/322 (31%), Gaps = 15/322 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             YF +    P++  L++  T  P+  +              + T     + +   L   
Sbjct: 51  GFYFARDVVLPLMIGLLLALTFSPVVRALQRIGIAPPITATALITALAAVIAVSAFLLSG 110

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                        V         +   L +    +  S    ++ S   S    SE    
Sbjct: 111 P------------VSDWINQAPRLGDQLRERAQTILDSFEAVRNASEQVSEITDSEDPTV 158

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL-FPAYWK 201
                  P   S           +II  ++   F    G     +L              
Sbjct: 159 QRVAVQTPGILSSAVGSVASILTTIIVTLVLALFLLASGDLFYIKLIEGFPRFGDKKRAL 218

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I   + + +    L +TII  G G+V+G   W  G+PS +   +   ++  +P    I+
Sbjct: 219 RIVYGIERRVSRYLLSVTIINAGLGVVIGLLMWGTGMPSPLVWAMAAFLLNFLPYIGAIA 278

Query: 262 FTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             A+S  +      ++  A  +         I  + + P ++G  ++L  +  F  ++  
Sbjct: 279 GVALSAAVAIVHYDHLTQALLVPALYLTATAIEGQLVTPIVLGRRLELNTVSVFVTVIFW 338

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G+ G  +    +  I V+
Sbjct: 339 GWLWGIPGALVAVPFLVCIKVV 360


>gi|330503226|ref|YP_004380095.1| hypothetical protein MDS_2312 [Pseudomonas mendocina NK-01]
 gi|328917512|gb|AEB58343.1| hypothetical protein MDS_2312 [Pseudomonas mendocina NK-01]
          Length = 361

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 74/333 (22%), Positives = 143/333 (42%), Gaps = 6/333 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L  F++ +  A ++ F SWP+            +  A I T   + +  VPL++L + 
Sbjct: 22  WVLAPFWSALFWAAVLAFASWPLMRLLTQLLNGRLSLAAGILTGVWVVMVAVPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +K+  + V     +   P P WL  IP          + +    +    +      
Sbjct: 82  LADHIKDANALVRDLQVEGLPPPPSWLGSIPLVGDRLVELWRTIDQQGAAFFDTLRPYLG 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +++   +++ G   ++  LS    ++ +FFFYRDG  ++  + SL E L        
Sbjct: 142 QVGNWLVARSAKIGAGMVELALS----LVLVFFFYRDGPRLAVFVHSLLERLIGERADHY 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +V   ++    G+   A  + ++    + +AGVP  + LG++T   + I    P+ + 
Sbjct: 198 LELVAGTVQRVVNGVIGTAAAQAVLAYIGFVIAGVPGALVLGLLTFAFSFI-MIPPLIWG 256

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
               +L+ +G I  A  L +WG   +  VD  L+P+L+     LP +    G+ GG+   
Sbjct: 257 PAVAWLVWQGEIGMAIFLGVWGFFIISGVDNILKPYLISRGGNLPLVVVLLGVFGGILAF 316

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           G +GLF+GP L+A+   +  + +       E +
Sbjct: 317 GFMGLFLGPTLLAVAYSLLSDWVANKTPPVETV 349


>gi|300936465|ref|ZP_07151385.1| conserved hypothetical protein [Escherichia coli MS 21-1]
 gi|300458387|gb|EFK21880.1| conserved hypothetical protein [Escherichia coli MS 21-1]
          Length = 376

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKMVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|317492767|ref|ZP_07951192.1| hypothetical protein HMPREF0864_01956 [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919290|gb|EFV40624.1| hypothetical protein HMPREF0864_01956 [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 354

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 110/355 (30%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ +    I+ +    +YF  G  AP+L A+++ +               S  +
Sbjct: 10  RRRFTDPQAVALLTILLVGFCIIYFFNGILAPLLVAIVLAYLLEWPTHKLQ-LIGFSRVW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   +    + ++ +  +      +   L++ +             L      +  + 
Sbjct: 69  AVIAVLIVFGGITLLSVFVIAPAVWQQGFNLMADMPKMVTRFYEFAATLPSRYPALVDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    + + ++   +    +    +  +    +          + +I + + +FF  +D 
Sbjct: 129 IIDMVVENIRAKMAVMGESVVKLSLASLVGLLT--------LAIYLILVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + +  +   
Sbjct: 181 EQMLNAVRRVLP-RDRGLAGQVWIEMNQQITNYIRGKVLEMVVVGIATYLVFLVVDLHYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVLVTIPVVIVALFQWGLGADFWTLFIAYLVVQGLDGNLLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     ++      G  G+F    L  L+  +            +
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGLWGFWGVFFAIPLATLVKAVIHAWPDEFISEAD 354


>gi|58698754|ref|ZP_00373638.1| hypothetical protein WwAna1163 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630700|ref|YP_002727491.1| hypothetical protein WRi_009930 [Wolbachia sp. wRi]
 gi|58534727|gb|EAL58842.1| hypothetical protein WwAna1163 [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592681|gb|ACN95700.1| hypothetical protein WRi_009930 [Wolbachia sp. wRi]
          Length = 354

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 124/350 (35%), Gaps = 3/350 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + I    I+  I+  L+ ++    P L +++I +   P+   F   +    +   + 
Sbjct: 1   MQKRHITICFILLFIIGMLFLMRPMIFPCLISVVIAYLFNPLVVKFEKYR-IPRSCSVIF 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++  FI+ + F+     +++  +++ +V                   +   +    
Sbjct: 60  IILILLIAFILVITFVLPIIYVQITSILNFLVSKVPSLKLKVIPSVLEFLNIKIEDSLFD 119

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           HLS   +    +      N +D    F  +      +    ++   +  F+  RD   I 
Sbjct: 120 HLSKNLAENYSNYVSYFMNALDIASNFIIQVLSSSFNTVSLMVITPVVFFYILRDWPLII 179

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++   L    +          V  +I +   G   + I   +    +  + G+   + +G
Sbjct: 180 EKASKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEHSIVIG 239

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +++ ++  IP   P+ +T +     I      F +  + L   +   I    L P L+G 
Sbjct: 240 ILSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVPLLIGK 299

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + +       G+       G  G+ +   ++A+  V  + +I    +++
Sbjct: 300 KVHIHPTVIILGITICASYFGFTGILLFIPIIAMFNVSVEYAINKYFKSE 349


>gi|297623498|ref|YP_003704932.1| hypothetical protein Trad_1266 [Truepera radiovictrix DSM 17093]
 gi|297164678|gb|ADI14389.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 400

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 115/346 (33%), Gaps = 8/346 (2%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             ++    +   Y  +G +     A  I + + P+   F  ++      + V+  +    
Sbjct: 20  LLLLASGAVWFFYETRGVWLLFFLAYTIAYLTNPLTLWFQRRRLPRWLGVGVVLLLLTAL 79

Query: 73  -----LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                  I   +      M E+  L   ++   +    V R L   P   +  +   +  
Sbjct: 80  FALASFVIAQFVHQASLFMQELPNLNEPLLRWYEGLPEVLRGLVPTPVVDFLGQPGAQAG 139

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSI 184
           +   +  I     +       + +F++    + +++    L  + ++    F   D   I
Sbjct: 140 AELGAELIAPFEGMVGYLGGVLTQFSANVFALLVNFVGGLLQAVVLLFLTLFLLYDFNGI 199

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           ++    L    +     +  + +   +     G  +IA+  G  +     L GVP    +
Sbjct: 200 NRTFLRLIPERYREGGLETLQRLDVSVGGYIRGQILIALVVGFSIWLGLTLLGVPLAFGV 259

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G + A+  ++P   PI     +  L +               +  F+    + P +    
Sbjct: 260 GFVAAVFNVVPFLGPIVAFIPAGLLALTVGWPYVLATAALFMVINFLDGNVISPIIFSKT 319

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +K+  L     +  G   +GLLG  +     A + V+++E  +  +
Sbjct: 320 VKVHPLTVILSVALGASLLGLLGAVLAVPTAAFVKVLYQEYYLTSR 365


>gi|327405457|ref|YP_004346295.1| hypothetical protein Fluta_3486 [Fluviicola taffensis DSM 16823]
 gi|327320965|gb|AEA45457.1| protein of unknown function UPF0118 [Fluviicola taffensis DSM
           16823]
          Length = 380

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 116/340 (34%), Gaps = 19/340 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +++ +I V ++       PV+ A I G    PI S    K         +I  
Sbjct: 9   QKRIFNILLLVVIGVIVFLGSDILFPVILAFIFGVLIRPIDSFLQKKWRFPKILSVIITV 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + +F   L  L         +L        +    +  W++   G     +      
Sbjct: 69  AIAIVIFAGVLFLLGLQLKDFFSDLPKLEKNMMKVIHDIGDWINHTFGISNLKQEKIVKE 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  +   ++S     T                     ++ I + + LF F      +   
Sbjct: 129 NLMKGGSLVSMESFGTL----------------TGALVNFILVPLYLFLFLFYRELLLGF 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L         + I   +  +IR   LG+ +       +     WL GV   + LG++
Sbjct: 173 LMRLVSAKSSERMQIIVNDIKVIIRMYILGLLLEIAIVAALTTLGLWLIGVKYSLFLGLL 232

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNI---FNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            A++ +IP    +    +S  + +  N     +   +     +   I +  L P +VG  
Sbjct: 233 VALLNLIPYVGILVANFLSCLISLSNNPDIQQSVLGMVAVIGVVQLIDNNILLPRIVGSK 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +++  L +   ++ G    G+ G+F+   + A++ V++  
Sbjct: 293 VRINALASILSVIVGGALAGVSGMFLAIPITAILKVVFDA 332


>gi|299065816|emb|CBJ36994.1| putative permease transmembrane transport protein (perM) [Ralstonia
           solanacearum CMR15]
          Length = 356

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 104/340 (30%), Gaps = 8/340 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +    +    L  L  L     P + A I+ +   P        +         + 
Sbjct: 10  TKRTLAWIAVAVAFLALLKLLAPTLTPFVFAGILSYILHPGVEWLQRHRV-PRVLGVFLM 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +M + +  +L +      E+  +  ++                 P            
Sbjct: 69  ILLLMVVAMALMLLILAVLQREIPAIREQLPGMLSKLNAAI-----TPRLAEMGLHVRFD 123

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               + L          + +     +    G   +     +  + I +F+   D   + +
Sbjct: 124 FPGLRKLLTEQLAASPEDVMSTALNYLRVSGSAAVQVLGIVFLVPIVMFYLLMDWNMLIR 183

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +L+      +    ++++     ++     G  I+ +       +   LAG    + +G+
Sbjct: 184 RLEGTVPRRWIGKTRELAAETDGLLSQYLRGQIIVMLVLAAYYSTGLALAGFDVALPIGI 243

Query: 247 ITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            T +   IP         ++I       GN++    + +   +   +    L P LVG  
Sbjct: 244 FTGLAVFIPYIGFGIGLILAILSALLQFGNLYGLLAVAVVYGVGQVLEGFYLTPRLVGER 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           I L  L     L+   +  G  G+ +   + A++ V  ++
Sbjct: 304 IGLHPLAVILALLAFGQLFGFFGILLALPISAVLLVGLRQ 343


>gi|251780428|ref|ZP_04823348.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084743|gb|EES50633.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 370

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 99/341 (29%), Gaps = 2/341 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
                +       +P + ALI  +   PI   F  + + S     +     +  + I+  
Sbjct: 31  FFFNIVKHFISIMSPFIYALIFAYILNPIMMIFEKRFKFSRGKSILATYAIITGIIIMFF 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F     +  +  ++ +V    +            P       +    L     L  +  
Sbjct: 91  FFTIPSLVDSIASIIKEVPNYMETIQEWINTAIKNPKLSEL--IVDAGLVDKIELLSIKM 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  +  +        +      +  +  L        S+      + +    +
Sbjct: 149 GNFTITILQGMLGYLLSLTGNLVKIVFGFLIAVYVLSDKDGLLHSLKTITYIILKEKKAS 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K      K+I        I +   GL+      +   P  + L +I AI  MIP   
Sbjct: 209 ELIKACNTYNKMIGVYIGTKAIDSAIIGLIALIGLIIVKAPYALLLSIIVAITNMIPYFG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V   + I  +   A  +F+   +        L P L+G  + +       G++ 
Sbjct: 269 PFIGEIVGAGVCIFVSPMKALVVFILLLLIQQFDAWYLDPKLIGAKVGVKPFWIIMGVII 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G +G+ +    +A I + +   +   K     +  +
Sbjct: 329 GGAFWGPIGMLLASPTLATINIYYIRLVKFYKSKNPSLFKD 369


>gi|228992073|ref|ZP_04152009.1| hypothetical protein bpmyx0001_28180 [Bacillus pseudomycoides DSM
           12442]
 gi|228767802|gb|EEM16429.1| hypothetical protein bpmyx0001_28180 [Bacillus pseudomycoides DSM
           12442]
          Length = 376

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLERK-GVSRIISIASIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G           L+
Sbjct: 96  LVIGLFVFLVVTVIPIIKDQVNALIDNLPYFGHEV----ERAARRFGESNIIGKIQDSLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   T   TN +  +    + F     +  L+ + +   LF+  +DG  + +  
Sbjct: 152 IDVGSIVKDSTINFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPRYF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    +  K I   +   I S   G  I+++  G++L   Y + G+   V L V+ 
Sbjct: 212 LRFIPEQRRSSAKLILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAVLA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   I      K + P ++G  + + 
Sbjct: 272 MIVNVVPYVGPIIAILPALIIAFIDSPAMILKVIIVMMIVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGVILAIPGYAILKVLVTH 367


>gi|304315561|ref|YP_003850706.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777063|gb|ADL67622.1| sporulation integral membrane protein YtvI [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 354

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 105/340 (30%), Gaps = 2/340 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R        I+   ++    + ++ L  F  P   AL +     P       K +     
Sbjct: 7   RYQSTIKNVIIILAVIISFYLFVFKLIPFLMPFAVALFLAILIDPAVEFLEKKLKVPRGL 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +    + ++ +  + +  L    + E+  L        ++   V   L D     + S 
Sbjct: 67  SSAFLILLLIAIIGLLISLLITQLVFELNTLAEHAPNYTKNFDVVISDLIDRIRIYYISL 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     +L+ +      +        +         ++    I  I++ FF  +D 
Sbjct: 127 PTNISTFLENNLQSILNNI--SVLAKNFAAWILGLATKLPNFFFMSIITIVSTFFLSKDK 184

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           + I   +       +  + + I   + + +         I     + +     + G    
Sbjct: 185 WLILNFIKRQFPSNWALHAENIKGDLFQTLIGFIRAEITIMFITFMEVSIGLTIIGFDYA 244

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LG++ + + ++P     S         I    +      L     + +V + + P +V
Sbjct: 245 FLLGLLVSFIDILPVLGSGSVLVPWAVYNIFTKNYLIGIYLLILYGIVTVVRQMIEPKIV 304

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  I L  L T   +  G +  G  GL +GPV + +    
Sbjct: 305 GQSIGLHPLVTLLSMFIGAKLFGGFGLIMGPVFVVVFKTF 344


>gi|325294630|ref|YP_004281144.1| hypothetical protein Dester_0431 [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065078|gb|ADY73085.1| protein of unknown function UPF0118 [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 346

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 118/340 (34%), Gaps = 5/340 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
                +F+++  L+ +K    P      I + S+P+++ F    +  +   A++   S+ 
Sbjct: 9   FLLSTIFLLIFFLFSMKTAIMPFFIGSAIAYLSYPLFNLFRKLTKNRTNISAILTLFSIF 68

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+ L  +    + +++  +  +    +         +    G    +      S  Q
Sbjct: 69  LVLIIVLFIVLPTVISQVQSFIKFLPELTKK----LDAFTYKFVGEHLLKKLHFDTSTLQ 124

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L   +   L +  +  I +             ++++ + +  ++F  +   I      +
Sbjct: 125 TLVRSAYIQLGSLPVRDIVQRFFSGVFSVFTLFINVVIVPLITYYFLVNAGKIRDIYLKI 184

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    K +   V + + S  +G   +A   G  +    +  G+     +G +  ++
Sbjct: 185 TPVSIRDELKSLLEKVHESLSSYLIGQIAVATFVGFYIALGLYFVGIKYSFLIGFVAGVL 244

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIKLPFL 310
            MIP     S    SI L I  N      + +       + ++  + P ++     +  L
Sbjct: 245 NMIPYVGFFSGLIPSILLAIFDNGQLTYVIGVLIVFLTEVGIENLIYPVVMSKTTGINPL 304

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                +  G    G LG+ I   +  +I  I++  +   +
Sbjct: 305 LILLSIFIGGYYGGFLGIIISVPIAVMIVPIFESFLEKRE 344


>gi|261408709|ref|YP_003244950.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|261285172|gb|ACX67143.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
          Length = 372

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 10/354 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G+     +F+I   +Y L     P L A II +   P  +               ++ +
Sbjct: 11  RGVWVLSSIFVIAYLIYVLLPLLYPFLLAWIIAYAMNPCVNLLQRSLRMPRWIAVTLSLL 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVV----------LANQHGIPVPRWLSDIPGGMW 118
                 ++ L       + E+  L                A          +++I     
Sbjct: 71  LYFGAALLILTAAVSRLVKELIALSQSFNLHIDAWVEWLTAWTQNESFQNIVNEISRFYQ 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +  +   ++   +    +     T+ +  I     +      +     I ++++ FF  
Sbjct: 131 NNPNYHDTINQNITRTTQTIGTAVTDLVTGIFNGILQIIYYLPNLGTIFIVVLLSTFFLS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                 ++ L  L   +       I   + K +        I+     +++    +  GV
Sbjct: 191 NSWERHNRALLRLLPDVIRKPMNYIFSDLKKALFGFARAQLILISITAVIVTITLYALGV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            S  ++G++  ++ ++P                  +              + +V + + P
Sbjct: 251 DSAFSIGLLIGLVDLLPYLGVGIVLIPWSLYAFMSDDLTLGIGLTVLYSIILVVRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++   + L  L    G+  G++  G+LGL IGPV + ++    +  +     N
Sbjct: 311 KVLASSVGLDPLAALLGMFVGLKLFGILGLIIGPVSLVILDAFHRAHVFKDLRN 364


>gi|92114548|ref|YP_574476.1| hypothetical protein Csal_2430 [Chromohalobacter salexigens DSM
           3043]
 gi|91797638|gb|ABE59777.1| protein of unknown function UPF0118 [Chromohalobacter salexigens
           DSM 3043]
          Length = 360

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 104/337 (30%), Gaps = 24/337 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++    + II+  +        P+L +L I             +          ++ +
Sbjct: 15  NLMLTLASLVIIVGGMRAGADLLIPILLSLFIAVICTSPVHWLHERGLGMR-----LSVL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +  V +  L           +  +    +        +     G   S        
Sbjct: 70  VTLLILGVLVTLLGALLGNSFATFMEALPKLQEQLQEHYLAVLRWLAGQGISIDPQGISR 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +          ++  D++P F    G +     + ++ +I  LF        +S+ L
Sbjct: 130 LFDT----------SSATDWVPVFLGSVGNLLSQSVVIMLLVIFMLFETLDFRNKVSRAL 179

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +    L             + ++      T+I++  G+++  +  L GV   +  G + 
Sbjct: 180 LNPAPSLKR------FTEFSRNLKRYLAIKTVISLVTGVLVWGSCLLIGVDFALLWGTLA 233

Query: 249 AIMAMIPGGAPISFTAVSIYL---LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             +  IP          ++ L   + +G +F A  L        F +   + P ++G  +
Sbjct: 234 FCLNYIPNIGSALAAVPAVLLTLAMPEGGLFKAMVLAGAYLAINFFMGNIIEPRVMGRTM 293

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L  L  F  LV      G +G+ +   L   + +  
Sbjct: 294 GLSTLVAFLSLVVWGWIFGPVGMLLSVPLTMTLKIAL 330


>gi|225166062|ref|ZP_03727803.1| protein of unknown function UPF0118 [Opitutaceae bacterium TAV2]
 gi|224799696|gb|EEG18184.1| protein of unknown function UPF0118 [Opitutaceae bacterium TAV2]
          Length = 419

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 111/353 (31%), Gaps = 14/353 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +   +   +        P+  A I+     P+     S+         V      + L  
Sbjct: 56  VGITLSFVVRHFSSVLWPLAVAGILALILRPVVEFLESRLRFRRPIAVVALYAVFVLLVA 115

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             LL +    + ++ E +S +    +  +   +  S    GM   ++            +
Sbjct: 116 AGLLVIIPPVVKQLIEFLSALPGLWEKAVAYVQEHSPQWLGMVHDKMANAKFQEIVQNLV 175

Query: 136 LSETFLKTNGIDFIPRFASRF------GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                     +  +              + F  +   +  + I LFFF       ++ L 
Sbjct: 176 SHVKTAAAEAVPSVESVVPSLKSAGIGVLGFFGFVTHLAIVPIYLFFFLLSRREPTRGLG 235

Query: 190 SLGEHLFPAYWKKISRIVPK---VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           S    L P     +  ++ +   +I S F G  +I +  G++L   + + G+   + +G+
Sbjct: 236 SQLPFLKPGVRDDVVFLINEFIAIIISFFRGQLLIGLIMGVLLALGFSIIGLKFGLFIGL 295

Query: 247 ITAIMAMIPGGAPISF----TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
              I+ ++P    I        +++     G +     + +   +   I    L P ++G
Sbjct: 296 ALGILNIVPYLGTILGLSVALPLALLQPDGGGVQLLVLVLVVFCVVQMIEGWFLTPKIMG 355

Query: 303 GPIKLPFLPTFFGLVGGVRTM-GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               L  +     +      +  +LG+ +   L A     W+   +      +
Sbjct: 356 DRTGLHPVAIIVAIFFWGTALDSILGMVLAIPLTAFFVTAWRLLKLKYLHRDD 408


>gi|301018561|ref|ZP_07182939.1| conserved hypothetical protein [Escherichia coli MS 69-1]
 gi|300399680|gb|EFJ83218.1| conserved hypothetical protein [Escherichia coli MS 69-1]
          Length = 376

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHISPERILQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L G+   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGLQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|229586979|ref|YP_002845480.1| Permease PerM-like protein [Rickettsia africae ESF-5]
 gi|228022029|gb|ACP53737.1| Permease PerM-like protein [Rickettsia africae ESF-5]
          Length = 356

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 125/355 (35%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++N   I   + + + +     +     P   A II +   P      SK + S+ 
Sbjct: 1   MRKIIMNRTVIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFITSKFKISNK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F + I  +  + +F + L  L      ++   ++ +   N +          +P  M   
Sbjct: 61  FASSIIYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++      + +        +  I     R+ +I ++  +  + + I LF+F RD
Sbjct: 116 YSIEPDIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   + SL          +I   +  ++ +   G   I +        A+ + G+  
Sbjct: 176 WAKIIANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDL 235

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG++T  + +IP         +++ +  L  G       + +   +          P
Sbjct: 236 ALLLGILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 350


>gi|74314074|ref|YP_312493.1| hypothetical protein SSON_3712 [Shigella sonnei Ss046]
 gi|73857551|gb|AAZ90258.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 376

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|302380888|ref|ZP_07269350.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
 gi|303234851|ref|ZP_07321476.1| putative membrane protein [Finegoldia magna BVS033A4]
 gi|302311266|gb|EFK93285.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
 gi|302493969|gb|EFL53750.1| putative membrane protein [Finegoldia magna BVS033A4]
          Length = 381

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 108/340 (31%), Gaps = 10/340 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------EESSTFLAVIATVSVMCLF 74
           +L       +P +    + F      +   +K                 +I+ V V  + 
Sbjct: 37  ALSTFMAIISPFIIGAALAFVLNMPMNFIENKLLKKWTSKPGLKRAISLLISLVIVSAIL 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  +    +  +K L+  + +  +     P     +        + + H    +   
Sbjct: 97  TFVVTLIIPNFLEAIKSLIQGIPVLVEKLRKYPEIAKQLDKIYDTYAITSTHDLFVKLKP 156

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L++  L  + ++ +    S    + L + +S  F I  LF         ++        
Sbjct: 157 YLTKNGL--DILNNVFFGISTVFSVVLSFVVSFTFAIYLLFSKETLRRQFTELTYVFFSG 214

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                     ++  +   S F G  I A   G +     +L  +P+   + V+    A+I
Sbjct: 215 KTAKRIIVFFKVAYEKFYSFFKGQFIEAFMLGFMCFIGMYLLKMPNAATVSVLIGFGALI 274

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I   A+   +++  +   A    ++  +          P +VG  + LP +    
Sbjct: 275 PLVGAILGAALGALIILIESFSKAIMFVIFIIVLQQFDGNVTYPRIVGSSVGLPSIWVLV 334

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +  G    G++G+ I   + A I  +         E+K 
Sbjct: 335 AVTIGAAVSGIVGMLIFVPIFATIYELLYRYKKKKLEDKN 374


>gi|94268176|ref|ZP_01291111.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
 gi|93451703|gb|EAT02478.1| Protein of unknown function UPF0118 [delta proteobacterium MLMS-1]
          Length = 309

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/314 (10%), Positives = 89/314 (28%), Gaps = 12/314 (3%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
             +    +                  L +V  L +F     ++ +L+ ++      G  V
Sbjct: 2   PIAWMEERLGVRRLVGVSCVLALFFLLVLVSALTVFPVLWTQLADLLKEIPHYLARGQQV 61

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
              L +    +   ++     +                    +   +    +  +   + 
Sbjct: 62  LLNLPERYPVITEEQVRELVGTIRNQ---------VGALGQHVLAISLASVVNIITLLVY 112

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           ++ +   +FF  +D   I   +            + + R +   + +   G     +  G
Sbjct: 113 LVLVPFLVFFLLKDKDLIMNWISLRLPRE-RGAAQDLWRDLDAQMGNYVRGKFWEILIVG 171

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLW 284
            +   ++ +  V   V L  +T +  ++P    +  T   + +     G       L + 
Sbjct: 172 GITFISFTILRVDYAVLLATLTGLSVLVPYVGAVVVTIPVLLVGYFQWGVGSELAWLLIA 231

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I   +    L P L    + L  +     ++      G  G+F    L  L+  +   
Sbjct: 232 YGIIQTLDGNVLNPLLFAKAVNLHPVAIIGAILIFGGLWGFWGIFFAIPLATLVNALIIT 291

Query: 345 SIMAIKENKEKISS 358
                   +E+  +
Sbjct: 292 WPRNPDPEEEEAQA 305


>gi|113970680|ref|YP_734473.1| hypothetical protein Shewmr4_2345 [Shewanella sp. MR-4]
 gi|113885364|gb|ABI39416.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
          Length = 366

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  + + LYF  G  AP+L AL++ F      +  + K   + T 
Sbjct: 10  QERFSDPQAVTLLAILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQML-KLGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + +V    L      +   L++ +      G+   + L+       +S+
Sbjct: 69  GASLVLVLFLGIVVVLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTLQGLATQYPQFVSSD 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QLNL-------MVAELKKLLDTQHLLDIAKQLIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                +K+   + + I +   G  I  +  G+     +   G+   
Sbjct: 182 DQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYIFFAFMGLRYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLMLGYGIIQALDGNVLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G+ G+F    L +L+  +         E
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPKTEIE 352


>gi|255327349|ref|ZP_05368423.1| integral membrane protein [Rothia mucilaginosa ATCC 25296]
 gi|255295629|gb|EET74972.1| integral membrane protein [Rothia mucilaginosa ATCC 25296]
          Length = 408

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 111/355 (31%), Gaps = 16/355 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
              R +++      L+   G  +     L   ++           + KK   +   A IA
Sbjct: 30  WAWRIIMIAGAGWILWKGLGHVSLLVISLLVALLLAALLSPAVMLLRKKGVRAGGAAAIA 89

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++ +    +       +     +  K V   Q  I             W   L  + 
Sbjct: 90  EIGMILVLAGIISLTGQQILRGFVSMADKAVQGYQQLI------------GWLKNLGYEF 137

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +   +  +       TN    +    S+ G    +     +  +  L FF  +G  I  
Sbjct: 138 GADQMNQLLDQMESAVTNNPSSVLHGVSQVGSTAAEVATGTLLTLFTLVFFLMEGERIWL 197

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  L      A      R   K + +      ++A  + + +G    + GVP  + LGV
Sbjct: 198 FVTRLFPKDARAAVNGAGRAGWKSLGAYVRVQILVAAIDAIGIGVGAAILGVPLAIPLGV 257

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  + + +P     IS     +  L+      A  +     +   +    L+P ++G  +
Sbjct: 258 LVFLGSFVPVIGALISGAVAVLLALVALGPVQALIMLGIVLLVQQLESHILQPLIMGKAV 317

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            L  L   F + GG    G +G       +A++  + +       E +      F
Sbjct: 318 SLHPLAVIFSVAGGSMIFGAVGALFAVPTLAVVNAVVRYLANRDWEKEAPREEEF 372


>gi|229825463|ref|ZP_04451532.1| hypothetical protein GCWU000182_00823 [Abiotrophia defectiva ATCC
           49176]
 gi|229790026|gb|EEP26140.1| hypothetical protein GCWU000182_00823 [Abiotrophia defectiva ATCC
           49176]
          Length = 396

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 108/345 (31%), Gaps = 16/345 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---------STFLAVIATVSVMCL 73
           +L ++     PV+   I+ +  +P+     S   +                +  + ++  
Sbjct: 46  ALKWVGAILKPVIIGFIMAYLLFPMLEKLESLLRKIKPLKKKKSVRGLAVALQWIIILVG 105

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + +  L      + +   +      +        ++++   +          S     
Sbjct: 106 LFIVVSLLVSVITKQAR--AANSEDIIEGIKTYANSINELYRELIDRLDKLNINSAEIKS 163

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS--- 190
            + + T      +  +            D   + +F +I   +F  D   + +       
Sbjct: 164 SVDTFTNNLGKYMLNLSSQLGNLAGNLKDGLATALFALIFSIYFLLDMPKLKKYWGRVLG 223

Query: 191 -LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +           + +   KV      G  I A   G+V+   + + G+   + +G++  
Sbjct: 224 IILPEKVKTTLDTLIKDADKVFSGYIRGQAIDAFMVGVVVSVVFSIIGIQYAIVIGLLIG 283

Query: 250 IMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +IP   PI   + + I  +   +  +     +   I   I    + P L+   + + 
Sbjct: 284 LGNLIPYMGPIVGYSSIVIVGIATSDYKSMVIAAIALLIIQAIDGNLIYPKLLSTSVNIH 343

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +     L  G    GL+G+ +     AL+ V ++  I   ++  
Sbjct: 344 PMIVIISLTVGASIGGLVGMIVAVPTGALVKVWFERLINIAEKKN 388


>gi|291299126|ref|YP_003510404.1| hypothetical protein Snas_1608 [Stackebrandtia nassauensis DSM
           44728]
 gi|290568346|gb|ADD41311.1| protein of unknown function UPF0118 [Stackebrandtia nassauensis DSM
           44728]
          Length = 371

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 108/323 (33%), Gaps = 13/323 (4%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                +L A  +     P+ +                  + V+ +    L+ +    + E
Sbjct: 60  SLLIVILVAGFLAIGLNPLVTRIQGW-GMPRGLAVATVCLGVLLIVCGGLMSIVPAIITE 118

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + + V  +    QH      WL ++       +   + L             +K + +  
Sbjct: 119 VTKFVEAIPGLVQHYSE-QEWLKNLDKKYHLLDQAQEAL-----------KGIKPSTVLE 166

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                +      +      + + +   +F      +      L         + +  ++ 
Sbjct: 167 AAGGLAGVVGGVVGSVFDGVMISLLTIYFLVSFDRLKGGFYKLLPAPRRQRAQALGDVIL 226

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             + +  +G   I    G+      + AGVP  +AL  + AI+ +IP         V   
Sbjct: 227 AKVGAYTVGALGIGATAGVCSYVFMFFAGVPYAIALAFVVAILDLIPQIGATLGAVVVTL 286

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +  +++ A    ++  I   + +  + P ++   +K+  L    G++ G   MG++G 
Sbjct: 287 VGLTVSVWVALACAIFFIIYQQLENWVIYPTIMRRSVKVSDLAAILGILIGAGLMGVVGA 346

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
            +    +A I +I +E  +  ++
Sbjct: 347 LLAVPAVAAIQLIVREVYIPRQD 369


>gi|126432772|ref|YP_001068463.1| hypothetical protein Mjls_0159 [Mycobacterium sp. JLS]
 gi|126232572|gb|ABN95972.1| protein of unknown function UPF0118 [Mycobacterium sp. JLS]
          Length = 381

 Score =  115 bits (289), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 101/344 (29%), Gaps = 14/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +  +  +L  +  L+    PV  A ++     P       +          +  +
Sbjct: 25  RLLIIFGALVAVLWLVARLEIIVVPVALATMLAALLMPAVDFLDRR-GAPRGGAVALVLL 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +    L F+    +  M  L  +V  +                  W  E       
Sbjct: 84  SGIAVVGGILTFVVSQFVEGMPALGEQVTRSIDGMRR------------WLVEGPLDLSR 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N  + +   A        +     + ++  L F    G +I   +
Sbjct: 132 EQIDNAGNAAIEAVRNNQERLTSGALSTAGTITEIVTGALLVLFTLIFLLHGGRNIFGFI 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +   R     +        ++A+ + + +G+   +  VP  + L  + 
Sbjct: 192 TQVFPPDVRDRVRGAGRAGFHSLIGYVRATFLVALVDAIGIGTGLAIMSVPLALPLASLV 251

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       I  L+   +  A            +    L+P ++G  + +
Sbjct: 252 FLGAFVPLVGAVVTGFLAVIVALLTKGLVYALITLGLILAVQQLEGHVLQPLVMGRAVSI 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L     + GG    G++G  +    +A +    +  +   + 
Sbjct: 312 HPLAVVLAIAGGGVLAGIVGALLAVPAVAFLNSAIRVLLARDQA 355


>gi|308050275|ref|YP_003913841.1| hypothetical protein Fbal_2565 [Ferrimonas balearica DSM 9799]
 gi|307632465|gb|ADN76767.1| protein of unknown function UPF0118 [Ferrimonas balearica DSM 9799]
          Length = 362

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 110/336 (32%), Gaps = 24/336 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +      ++L  +        P L AL I     P+    +  K   S     +A  
Sbjct: 14  RTAVFLAATMVVLAGIKSASAIVVPFLLALFIAIICSPLVRGLMRLKLPRS-----VAIF 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +VM   I+   ++       + +   ++                        E +   L 
Sbjct: 69  AVMAFVILAGTWIATLVGSSINDFTRQLPEYRAQLT----------------EAFGVVLE 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I ++   +      +   A+           +++ +++ + F   +   ++++L
Sbjct: 113 KANQFNISTDQLKEQFDPGRLMSVATNIVSSLGGLMTNMLLIVLTVVFMLFESAGLNRKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +   P    K      + +       T++++G G++ G   +L GV   +  G++ 
Sbjct: 173 HYALDD--PQMRLKQIDRFLESVNRYLAIKTVVSLGTGIICGLGLYLIGVDYFLLWGLVA 230

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I          LI+  +  A  +         ++   + P ++G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPPVALALIQLGVGPAAGVAGLYVAVNMVMGNLVEPRMMGRSLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 326


>gi|304570643|ref|YP_832075.2| hypothetical protein Arth_2596 [Arthrobacter sp. FB24]
          Length = 398

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 108/337 (32%), Gaps = 11/337 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  ++             +++AL I     P+      + +       +++   ++    
Sbjct: 72  LALLVYWIGSNTTQLLLWIVTALFIALGLDPVVRWLEGR-KLPRPIGILVSVTVLVSAVA 130

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L    + ++ ++V +     Q  I             +   +  +     +  + 
Sbjct: 131 GFFATLIPTIVQQVTQVVQEAPRWIQDFID----------SDFFRSVDDQFGVRERITQE 180

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L +     + +  I      FG    +     + +++   +F     ++ +    L    
Sbjct: 181 LEKFVNNPDAMGGIFGGVVGFGSTVANGLFGTLIVLVLSLYFLAALPAMKKWGYRLAPRS 240

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A  + +S  +   + +  +G   +A+           + GVP  V L  + A++A IP
Sbjct: 241 RRARVEALSEEITGSVGNYVIGQACVALLNATFAFIVMSIVGVPFAVLLAFVVALLAFIP 300

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +    +   + +      A    +     L      + P ++   + +P       
Sbjct: 301 LVGGMIAGVLVTLIALTAGWQTALVYAICYFAYLQFEAYFISPRIMQKAVAVPGAVAVIS 360

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++ G   +G+LG  I     A + ++ KE  +  ++ 
Sbjct: 361 VIAGGSLLGVLGALIAIPTAAAVMLLVKEIFIVRQDK 397


>gi|242242322|ref|ZP_04796767.1| permease [Staphylococcus epidermidis W23144]
 gi|242234224|gb|EES36536.1| permease [Staphylococcus epidermidis W23144]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 105/341 (30%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +       +   F P L +  + +   P  +                  + ++ +  + +
Sbjct: 40  VFAPIATIIGSVFLPFLISGFLFYICLPFQNILEKW-GFPRWASITTIFIGLIAIIAIVV 98

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +                 L    + +I   
Sbjct: 99  SFIAPIIISNINNLIKQTPSLQREAEQLINFSLR----------QMDKLPDDVTHRINKA 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G   I   +  +   F+     +I +   L +  +D       +    +     
Sbjct: 149 VKSMGDGATSILSNSVSYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKV 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   ++I  G++L   Y + G+P    L +   +  +IP   
Sbjct: 209 FVVDLLKDLNFTLKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 269 PWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILA 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + +   L A+I  +        +   +K +SN
Sbjct: 329 AGDLGGFTLILVAVPLYAVIKTLVSNIFKYRQRIVDKANSN 369


>gi|291546175|emb|CBL19283.1| Predicted permease [Ruminococcus sp. SR1/5]
          Length = 326

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 79/274 (28%), Gaps = 3/274 (1%)

Query: 90  KELVSKVVLANQHGIPVPRWLSD--IPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
             ++                + +              ++ S  Q     +        + 
Sbjct: 1   MNIIYSFPHYVSVVENWLNSVVEKGWKLNPDMISQINQYSSRLQEYLTNTILPQMQFMMK 60

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I        +   ++ +  I  +  L             + ++    +  +     R  
Sbjct: 61  NISASFLDLLVFLKNFLIGAIVSLYILADKEGFVAKAKMAVYAVLPTKWATFLVHSMRFT 120

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            K       G  + +   G++      + G P  + + VI  +  +IP   P        
Sbjct: 121 HKTFGGFISGKILDSAIIGVLCYVGTSIIGTPYAILVSVIVGVTNVIPFFGPYLGAVPCF 180

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L++  +   +    ++  I        L P ++G    L        ++ G    G+ G
Sbjct: 181 LLILLVDPIQSLYFLIFILILQQFDGNILGPKILGESTGLSSFMVIVAIMVGGGLFGVPG 240

Query: 328 LFIGPVLMALI-AVIWKESIMAIKENKEKISSNF 360
           + +G  + A++ A +WK    ++ E      + F
Sbjct: 241 MIVGVPVFAVLNAAVWKLIGRSLDEKDMSADAEF 274


>gi|169824238|ref|YP_001691849.1| putative permease [Finegoldia magna ATCC 29328]
 gi|167831043|dbj|BAG07959.1| putative permease [Finegoldia magna ATCC 29328]
          Length = 381

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 108/340 (31%), Gaps = 10/340 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--------EESSTFLAVIATVSVMCLF 74
           +L       +P +    + F      +   +K                 +I+ V V  + 
Sbjct: 37  ALSTFMAIISPFIIGAALAFVLNMPMNFIENKLLKKWTSKPGLKRAISLLISLVIVSAIL 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  +    +  +K L+  + +  +     P     +        + + H    +   
Sbjct: 97  TFVVTLIIPNFLEAIKSLIQGIPVLVEKLRKYPEIAKQLDKIYDTYAITSTHDLFVKLKP 156

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L++  L  + ++ +    S    + L + +S  F I  LF         ++        
Sbjct: 157 YLTKNGL--DILNNVFFGISTVFSVVLSFVVSFTFAIYLLFSKETLRRQFTELTYVFFGG 214

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                     ++  +   S F G  I A   G +     +L  +P+   + V+    A+I
Sbjct: 215 KTAKRIIVFFKVAYEKFYSFFKGQFIEAFMLGFMCFIGMYLLKMPNAATVSVLIGFGALI 274

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I   A+   +++  +   A    ++  +          P +VG  + LP +    
Sbjct: 275 PLVGAILGAALGALIILIESFSKAIMFVIFIIVLQQFDGNVTYPRIVGSSVGLPSIWVLV 334

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +  G    G++G+ I   + A I  +         E+K 
Sbjct: 335 AVTIGAAVSGIVGMLIFVPIFATIYELLYRYKKKKLEDKN 374


>gi|293366995|ref|ZP_06613670.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291318970|gb|EFE59341.1| conserved hypothetical protein [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 105/341 (30%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +       +   F P L +  + +   P  +                  + ++ +  + +
Sbjct: 40  VFAPIATIIGSVFLPFLISGFLFYICLPFQNILEKW-GFPRWASITTIFIGLIAIIAIVV 98

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +                 L    + +I   
Sbjct: 99  SFIAPIIISNINNLIKQTPSLQKEAEQLINFSLR----------QMDKLPDDVTHRINKA 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G   I   +  +   F+     +I +   L +  +D       +    +     
Sbjct: 149 VKSMGDGATSILSNSVSYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKV 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   ++I  G++L   Y + G+P    L +   +  +IP   
Sbjct: 209 FVVDLLKDLNFTLKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 269 PWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILA 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + +   L A+I  +        +   +K +SN
Sbjct: 329 AGDLGGFTLILVAVPLYAVIKTLVSNIFKYRQRIVDKANSN 369


>gi|318077539|ref|ZP_07984871.1| integral membrane protein [Streptomyces sp. SA3_actF]
          Length = 343

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 86/287 (29%), Gaps = 14/287 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
               + AL+I     P+ +               + T+    +  +   F+ +  M  + 
Sbjct: 1   MLAFVVALLITALLQPLVARLTRH-GVPRGLATALTTLFGFLVMGLMGWFVVWQIMDNVD 59

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L S+V    +                W  +          +    +         D + 
Sbjct: 60  QLSSQVQDGIEDLRR------------WLLDSPFHVTEKQINDIAKNLREAIGTNTDQLT 107

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                   I ++    ++    +  F   DG  I      L                   
Sbjct: 108 SAGIEGVTIIVEMFTGLLLAFFSTIFLLYDGQRIWGWFLKLVPAAAREGVAGAGPRAWNT 167

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYL 269
           + S   G  I+A+ + + +G   ++  VP  V L VI  + A +P    +       +  
Sbjct: 168 LTSYVRGTVIVALIDAVFIGIGIYVLEVPMAVPLAVIIFLAAFVPLVGAVVSGALAVLVA 227

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           L+   ++ A  +     +   I    L+PF++G  +++  L     +
Sbjct: 228 LVTQGVWAAIIVLGVVLLVQQIEGHVLQPFILGRAVRVHPLAVVLSV 274


>gi|158320696|ref|YP_001513203.1| hypothetical protein Clos_1667 [Alkaliphilus oremlandii OhILAs]
 gi|158140895|gb|ABW19207.1| protein of unknown function UPF0118 [Alkaliphilus oremlandii
           OhILAs]
          Length = 411

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 113/346 (32%), Gaps = 4/346 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++ +      +    + ++  S   L    +P L A+II +   P  +   +K      +
Sbjct: 65  KQILYVGLVFLGVFCVILLFQSGTVLYDVISPFLYAIIIAYIFNPFVNYIENK-GIQRIW 123

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I    +    +V  L L      E++ L+  +    +       ++ D         
Sbjct: 124 AVFIVYFIISGGVLVFSLSLLPKMTAEIRRLLDSLPNLKEGS---FGYIYDKYINYNNII 180

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                        +  +       I  I    +   +  +   L+I+   I  F+F +D 
Sbjct: 181 ENLPVEFQGVKDILKLDNRKLEEIILKILSSVTNSVIGVVSKLLNIVITPILAFYFLKDK 240

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + L  L    F      +S+ +  V+     G  I+A   G++      +  V   
Sbjct: 241 EKFKKMLILLIPKYFRKGIIDLSKDIDGVLGGFIRGQLIVAFIIGVLTTIIMMILRVEFA 300

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V +G++     +IP   PI      I     G +     + +   +        + P ++
Sbjct: 301 VLVGIVAGFADLIPYFGPIIGIIPGIIFASFGGLNKVLWVIVLFFVIQQAESSIISPKII 360

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              + +  +     L+ G +  G+LGL I      +I VI K  I 
Sbjct: 361 SDKVGIHPIVVILALIIGGKFFGVLGLLIAVPAAGIIKVIGKHFIN 406


>gi|229005620|ref|ZP_04163325.1| hypothetical protein bmyco0002_25530 [Bacillus mycoides Rock1-4]
 gi|228755652|gb|EEM04992.1| hypothetical protein bmyco0002_25530 [Bacillus mycoides Rock1-4]
          Length = 376

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLERK-GVSRIISIASIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G           L+
Sbjct: 96  LVIGLFVFLVVTVIPIIKDQVNALIDNLPYFGHEV----ERAARRFGESNIIGKIQDSLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   T   TN +  +    + F     +  L+ + +   LF+  +DG  + +  
Sbjct: 152 IDVGSIVKDSTINFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPRYF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    +  K I   +   I S   G  I+++  G++L   Y + G+   V L V+ 
Sbjct: 212 LRFIPEQRRSSAKLILNDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAVLA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   I      K + P ++G  + + 
Sbjct: 272 MIVNVVPYVGPIIAILPALIIAFIDSPAMILKVIIVMMIVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGVILAIPGYAILKVLVTH 367


>gi|300913741|ref|ZP_07131058.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X561]
 gi|300890426|gb|EFK85571.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X561]
          Length = 362

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 116/348 (33%), Gaps = 3/348 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 13  LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L                 L D     + S
Sbjct: 73  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDAILNLVDRIRTYYIS 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +++      + S     +     +  +   F     ++    +  ++A FF  +D
Sbjct: 133 LPP--NITSLIESNMHSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 191 KNLILDFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVIIGFDY 250

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              LG+   I+  +P     S         +I    +      L   I + +V + + P 
Sbjct: 251 PFLLGLFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVVVVRQMIEPK 310

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +VG  I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 311 IVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 358


>gi|300916791|ref|ZP_07133498.1| conserved hypothetical protein [Escherichia coli MS 115-1]
 gi|300415940|gb|EFJ99250.1| conserved hypothetical protein [Escherichia coli MS 115-1]
          Length = 376

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|160881610|ref|YP_001560578.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
 gi|160430276|gb|ABX43839.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
          Length = 374

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 108/319 (33%), Gaps = 2/319 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  FF P + A I+   + P+      + + +    + I  + V+ L    L  +     
Sbjct: 32  LLAFFLPFVVAYILSLIANPLVKFMEKRIKIARKHGSAIIIILVLALIFGLLYLVLSILF 91

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTN 144
            E+  L++ +    Q        +S     ++    +     L +  +    S   L + 
Sbjct: 92  REIYSLITDLPNIAQQIAESIEGISTKFASLYEALPQGLKTFLDNLNTSAQGSLDKLLSG 151

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                   A      F +    +I  I+A +FF  D   I    + +       + + IS
Sbjct: 152 VDLTSVIKAGGVVSTFTNTVFMMIITILATYFFIVDRDKIIAAANKILPESIKRFNRIIS 211

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                 +   F     I I   +V+   +   G+   + L +  A++  +P         
Sbjct: 212 DNFKTAVGGYFKAQFKIMIILTVVMFITFEFMGINYSILLALTIAVIDFLPVLGTGLVFW 271

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
               +      +    + L   +   I+ + L+P +VG  I +    T   +  G +  G
Sbjct: 272 PWAVISFINENYVEAIVILVLYLACQIIKQVLQPKMVGDSIGINPFQTLLFMFIGYKLYG 331

Query: 325 LLGLFIGPVLMALIAVIWK 343
           + G+  G  +  ++  +++
Sbjct: 332 IGGMIFGIPIGMVLVSLYR 350


>gi|228998127|ref|ZP_04157726.1| hypothetical protein bmyco0003_26940 [Bacillus mycoides Rock3-17]
 gi|228761662|gb|EEM10609.1| hypothetical protein bmyco0003_26940 [Bacillus mycoides Rock3-17]
          Length = 376

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 121/336 (36%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S     V   +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLERK-GVSRIISIVSIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G           L+
Sbjct: 96  LVIGLFVFLVVTVIPIIKDQVNALIDNLPYFGHEV----ERAARRFGESNIIGKIQDSLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   T   TN +  +    + F     +  L+ + +   LF+  +DG  + +  
Sbjct: 152 IDVGSIVKDSTINFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPRYF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    +  K I   +   I S   G  I+++  G++L   Y + G+   V L V+ 
Sbjct: 212 LRFIPEQRRSSAKLILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAVLA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   I      K + P ++G  + + 
Sbjct: 272 MIVNVVPYVGPIIAILPALIIAFIDSPAMILKVIIVMMIVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGIMGVILAIPGYAILKVLVTH 367


>gi|167754764|ref|ZP_02426891.1| hypothetical protein CLORAM_00268 [Clostridium ramosum DSM 1402]
 gi|167705596|gb|EDS20175.1| hypothetical protein CLORAM_00268 [Clostridium ramosum DSM 1402]
          Length = 365

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 103/328 (31%), Gaps = 17/328 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           P++   ++ +   P+                 +       ++ +++V+ + I+ L +L  
Sbjct: 40  PIIIGGVLAYFLEPLVQMVTKLFENCQSSFLKKHRRVLSVLLVSLAVILMIILLLTWLIP 99

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             M    E    +    +          + P          +         + S   L  
Sbjct: 100 MVMDYAVEFAKNIDTYVKSFEASINSSFEDPNLAGTIIQVEQTF-------VDSIKSLSA 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N    +  FA + G   L   + +IF    L    +      + +               
Sbjct: 153 NDFMEVIAFAGKTGSTLLTILMGLIFCPYILIEAEKLARIFDRFMLCFISQENLDLIHGY 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISF 262
           +    ++  +   G  I ++  GL+    + L G+P    L  +  I  MIP   P I  
Sbjct: 213 AIKSHRIFGNFIYGKFIDSVIIGLIALVGFGLMGLPFFPLLAFVVFITNMIPYFGPFIGG 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V   +L+   I  A    L+           L P ++G  + +        +      
Sbjct: 273 VPVVFIVLLTNGIMPAIWTALFIFALQQFDGLILGPRILGDSVGISPFWIICSITIFGSL 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G LG+F+G  L+ +I + + + +   K
Sbjct: 333 FGFLGMFLGVPLICVIRMFFNDFLEYRK 360


>gi|13474074|ref|NP_105642.1| hypothetical protein mlr4869 [Mesorhizobium loti MAFF303099]
 gi|14024826|dbj|BAB51428.1| mlr4869 [Mesorhizobium loti MAFF303099]
          Length = 390

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 115/339 (33%), Gaps = 12/339 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +F+ + +LYF + FF PV+ A ++  T  PI    + K+       A +  +
Sbjct: 31  RSLLVGIFIFMTVYALYFGRAFFMPVILAFLLALTLTPIV-RLLRKRGIPEVVSATLLVL 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +C+  +    L    +  +    S      +    + R L  I       E  T+   
Sbjct: 90  LSICVLAIAGYLLSGPVIDLLNNTSSIGQQLTERLAQLRRPLEKIMQVSHQVEQMTETSQ 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P          +       +   AS          +  +  +  L         I   +
Sbjct: 150 EPG------VQKVAVAQSGILSSAASNILSAGTSLTIIFVLSLFLLASGTMFYEKI---I 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S           ++   V + I    L +TII  G G V+G   W  G+P+ +  GV  
Sbjct: 201 QSFASLSEKKRALRVVYDVEREISHYLLTVTIINAGLGTVIGLGLWALGMPNPLVWGVAA 260

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A+   +P    +    +     L+    I  A     +  +   +  + + P +VG  ++
Sbjct: 261 ALFNFLPYVGALLTIVLVAVMALISFDTISYALLAPAFVLLCDVVEGQFVTPMVVGRRLE 320

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  +  F  +       G +G  +   L+ +I V     
Sbjct: 321 INAVAIFIAIAFWSWLWGFVGALMAVPLLVVIKVFCDHF 359


>gi|325662424|ref|ZP_08151030.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 4_1_37FAA]
 gi|325471258|gb|EGC74482.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 4_1_37FAA]
          Length = 376

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 103/336 (30%), Gaps = 2/336 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +   + +V+ + L G+F P +   +I   + P+      + +      + I  V V
Sbjct: 18  LVSLIGTVVFVVAGFQLMGYFMPFVIGWVIAMIANPVVRWLEKRLKIVRKLGSAIIIVMV 77

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLS 128
           + L +  L F F     E+K  +       Q      R +     G++            
Sbjct: 78  LGLIVTGLYFGFSKAFTEIKIFIDNFPEMYQQFEEDFRQIGREFQGIFHLLPAELQVGWD 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        L T   +     A  F        +++I  +I+ + F  +   I    
Sbjct: 138 EMVNNMDQGMADLITGISEPTVTAAGNFAKRLPSILIAVIVTVISAYIFIAERDEIIVWS 197

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +           +       +   F     I I   L+L        V   +   ++ 
Sbjct: 198 KKIAPSAVQKKMTMVVDNFKYAVGGYFKAQFKIMIVVALILSLGLAFLKVKYVLLCAILI 257

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A++  +P     +              +      +       +V + ++P LV   + L 
Sbjct: 258 ALLDFLPFFGTGTAMIPWAVFEFLTGDYKLAIGLIILYATTQLVRQLIQPKLVADSMGLT 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L T   L  G +   + G+ +      ++  ++K 
Sbjct: 318 PLVTLVLLYVGYKMGSVFGMILAVPAGMIVINMYKA 353


>gi|309789729|ref|ZP_07684309.1| hypothetical protein OSCT_0260 [Oscillochloris trichoides DG6]
 gi|308228215|gb|EFO81863.1| hypothetical protein OSCT_0260 [Oscillochloris trichoides DG6]
          Length = 379

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 118/357 (33%), Gaps = 17/357 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +I+ + ++ +  ++    P + A+I  +   P+ +    +         V+  V
Sbjct: 13  KLITAGIIVALTILFIQHIEHVLPPFIGAIITAYLFNPLVTWLQRRTNTRRAIWIVVLYV 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L      +++   + +  +L                   ++  G +  +L      
Sbjct: 73  FAFLLLYGLFTWIWPIIVQQTGDLARSAPQFANDIADFFADHQELDLGGFVIDLGP---- 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L  +   ++           L+  + I+  +I  F+   +   + +  
Sbjct: 129 -----LEEQLISLVRDLGAWLSGNVPGLVFSALETVIYILVYLIITFYLLLEAGHLKRWA 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L    +      +   +  V  +   G  I+ +   ++L     +  VP  + + V +
Sbjct: 184 TNLIPPPYREEIGSLGTQIDAVFSAYIRGQLILIVIMSVLLYIPLSILKVPYALVIAVAS 243

Query: 249 AIMAMIPGGAPISFTAVSIYL--------LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             + ++P   P S   ++I              ++  A  + +       I D  + P +
Sbjct: 244 GTLEILPIIGPWSAAGIAIIATLFQTHIPFGLSHLGLAALVGIIYFTLRQIEDHFIIPNV 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +G  ++L      F ++ G    G  GLF+   + A+I +I       + +  E + 
Sbjct: 304 MGPLVRLHPAVVIFAILAGGALAGAFGLFMSIPVAAIIRIILSYLYRKLTDQPEPLQ 360


>gi|297570507|ref|YP_003691851.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926422|gb|ADH87232.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 351

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 106/348 (30%), Gaps = 13/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ ++   ++ I  + L F     AP+L+A+II +      +    K       
Sbjct: 10  RRYFSDPQAVILTFLLLIGTLVLLFFGRMLAPLLTAIIIAYLLEGPIAWMEDK-GVRRIV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                 +  + L +V    +F     ++ +L  ++      G  V          +   E
Sbjct: 69  GVSFVLLLFVVLALVGSFAIFPLLWAQIADLFKELPHYIARGQQVL---------LALPE 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +           + +           +   +       +   + ++ +   +FF  +D 
Sbjct: 120 RYPAISEDQVREIVNTVRTQVGTLGQRMLAISLASVANLITLLVYLVLVPFLVFFLLKDK 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +         +  + +   +   + +   G     +  G+V    + L GV   
Sbjct: 180 KIILEWVSLRLPRE-RSAAQYLWHDLDVQMGNYVRGKFWEILIVGVVTYLCFALLGVDYA 238

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L  +T +  +IP    +  T     +     G       L +   +   +    L P 
Sbjct: 239 LLLATLTGLSVLIPYVGAVVVTIPVALIGYFQWGMGSELFWLLVIYGVIQGLDGNVLNPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L+  +      
Sbjct: 299 LFAKVVNLHPVAIIAAILVFGGLWGFWGIFFAIPLATLVNAVIICWPR 346


>gi|257462328|ref|ZP_05626743.1| permease [Fusobacterium sp. D12]
 gi|317059994|ref|ZP_07924479.1| permease [Fusobacterium sp. D12]
 gi|313685670|gb|EFS22505.1| permease [Fusobacterium sp. D12]
          Length = 377

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/330 (13%), Positives = 108/330 (32%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            FF P++ A+ +    +P+ +   +       F  +   + ++  F + +L +       
Sbjct: 38  SFFVPLIWAVFLSILLYPLQAFLRNHFHVKRAFALIAVLLLLVFFFSLFMLIVIPQVSKS 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +KEL        +                    +    +    S                
Sbjct: 98  IKELQQIYPYIEKRVGEFLDKSFLFLHKRGLLFMDETEIMKAISTYTKDNIQKIQQIGIS 157

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I            ++ + +      L         I + +    +        +I R   
Sbjct: 158 IFWNVFDLTFGIANFLIGLFLACFILLKPEDFIKLIERLVYLSVKKEKALQIIEILRKSK 217

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +  + F+G  +++I    ++    +L+  P  V   ++  +  MIP    +  + +S +
Sbjct: 218 DIFLNYFVGRLLVSIIVAFIVFLVLFLSKTPYPVLTALLFGVGNMIPYLGVLGASLISGF 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++    +    L     +   +    + P +VG  + L        ++   + MG+ G+
Sbjct: 278 LILIFAPYKIGYLIFAIVLSQALDGFIIGPKIVGDKVGLNSFWVVVAILLCGKLMGIAGM 337

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISS 358
           F+G  +  +I +I++E   A  + +E    
Sbjct: 338 FLGVPIFCIIKLIYEEKWKAYVQEEENEKE 367


>gi|310659377|ref|YP_003937098.1| hypothetical protein CLOST_2073 [Clostridium sticklandii DSM 519]
 gi|308826155|emb|CBH22193.1| conserved membrane protein of unknown function [Clostridium
           sticklandii]
          Length = 373

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 110/320 (34%), Gaps = 2/320 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  FF P +   II   + P+     +  +      ++I  +  + L I+   F      
Sbjct: 31  LAVFFMPFVIGWIIALIANPLVKFLENHVKIVRKHGSMIIIIFALTLVIITGYFGISRIY 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTN 144
            E+  L+  +             +S    G++    E     LS       +      +N
Sbjct: 91  KELITLIQNLPEIYNSLSLDIEKISHNFQGIYKLMPEEVQISLSSIGEELSVGAANGISN 150

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                   A RF        ++II  I+A +FF  D  +IS+ + +L      A +  I+
Sbjct: 151 IGKPTFTAAGRFAKNIPSTFINIIITILAAYFFIVDKENISRGIKNLVSDDIFAVFTDIT 210

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  ++   F     I     ++L   + +  +     L +  A++   P     +   
Sbjct: 211 NRLKFLVGGYFKAQFKIMGIVAVILFVGFLILDIGYSFLLALGIALLDFFPFFGTGAVLI 270

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                 +    +          I   +V + ++P ++G  I L  L T F +  G +   
Sbjct: 271 PWTIFKVLTGDYRLAIGLFLIYIISQVVRQIVQPKVLGDTIGLNPLATLFFMFIGFKLGS 330

Query: 325 LLGLFIGPVLMALIAVIWKE 344
           ++GL +   +  +    ++E
Sbjct: 331 VIGLVLAVPIGMIFINFYEE 350


>gi|114566019|ref|YP_753173.1| hypothetical protein Swol_0467 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336954|gb|ABI67802.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 339

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 110/320 (34%), Gaps = 14/320 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +++   +  L+ ++          ++ +  +   S    K      +  ++  +
Sbjct: 10  RYFFFIVVVLATIYFLFLVREVLLTFFLGAVLAYLLFRPISFLERK-GLKRVWAILLLYL 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +F +         ++E+ ++   +         + + +  +  G     L      
Sbjct: 69  LLLTVFSLFFSLAVPAMVVELNQMAGILPDYADQARNMAKSIDGMELGKLTPVLKENLNQ 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L    + FL                  FL   L++ F  I  F+   D   I    
Sbjct: 129 IENKLFEGLKNFLGG-------------FYSFLGKFLALAFSPILAFYIINDWEKIRDSF 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    F    K +   + + +     G  IIA   G+  G+A  L GV   + +G++ 
Sbjct: 176 LGLFSPSFRREIKAVLDKIDEALIEFLKGHLIIATFVGIFTGTAAALLGVKFPLLIGLVA 235

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  ++P          +I + +  ++  +  + L   I   +    + P ++GG + + 
Sbjct: 236 GVADLVPYFGAFLGGFFAILIALSESLQLSLYMGLAVVIIQQVESNIITPRIMGGKLGMH 295

Query: 309 FLPTFFGLVGGVRTMGLLGL 328
            L   F L+ G + MG+ G+
Sbjct: 296 PLLIVFALLAGGKLMGIWGM 315


>gi|27467631|ref|NP_764268.1| hypothetical protein SE0713 [Staphylococcus epidermidis ATCC 12228]
 gi|251810386|ref|ZP_04824859.1| permease [Staphylococcus epidermidis BCM-HMP0060]
 gi|27315175|gb|AAO04310.1|AE016746_100 conserved hypothetical protein [Staphylococcus epidermidis ATCC
           12228]
 gi|251805990|gb|EES58647.1| permease [Staphylococcus epidermidis BCM-HMP0060]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 105/341 (30%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +       +   F P L +  + +   P  +                  + ++ +  + +
Sbjct: 40  VFAPIATIIGSVFLPFLISGFLFYICLPFQNILEKW-GFPRWASITTIFIGLIVIIAIVV 98

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +                 L    + +I   
Sbjct: 99  SFIAPIIISNINNLIKQTPSLQKEAEQLINFSLR----------QMDKLPDDVTHRINKA 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G   I   +  +   F+     +I +   L +  +D       +    +     
Sbjct: 149 VKSMGDGATSILSNSVSYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKV 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   ++I  G++L   Y + G+P    L +   +  +IP   
Sbjct: 209 FVVDLLKDLNFTLKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 269 PWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILA 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + +   L A+I  +        +   +K +SN
Sbjct: 329 AGDLGGFTLILVAVPLYAVIKTLVSNIFKYRQRIVDKANSN 369


>gi|282854475|ref|ZP_06263812.1| putative membrane protein [Propionibacterium acnes J139]
 gi|282583928|gb|EFB89308.1| putative membrane protein [Propionibacterium acnes J139]
          Length = 408

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 119/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +  +L+       PV  AL++    WP+ +             + I  +
Sbjct: 63  RMIVIAAFIYGLYQALHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 121

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 122 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 179

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 180 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 229

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 230 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 289

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 290 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 349

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   S +
Sbjct: 350 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPSHD 401


>gi|165933552|ref|YP_001650341.1| permease [Rickettsia rickettsii str. Iowa]
 gi|165908639|gb|ABY72935.1| permease [Rickettsia rickettsii str. Iowa]
          Length = 356

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 124/355 (34%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++N   I   + + + +     +     P   A II +   P      SK + S+ 
Sbjct: 1   MRKIIMNRTVIFWLVFLGLFISGFMLISDAIKPFFIAFIISYLLQPAIGFIASKFKISNK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F + I  +  + +F + L  L      ++   ++ +   N +          +P  M   
Sbjct: 61  FASSIIYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++      + +        +  I     R+ +I ++  +  + + I LF+F RD
Sbjct: 116 YSIEPDIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   + SL           I   +  ++ +   G   I +        A+ + G+  
Sbjct: 176 WAKIIANMKSLLPIKTRPKILAILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDL 235

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG++T  + +IP         +++ +  L  G       + +   +          P
Sbjct: 236 ALLLGILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I L  L   F +       G++G+F    +  +  ++    I   K ++
Sbjct: 296 KIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSQ 350


>gi|158336614|ref|YP_001517788.1| hypothetical protein AM1_3482 [Acaryochloris marina MBIC11017]
 gi|158306855|gb|ABW28472.1| conserved hypothetical membrane protein [Acaryochloris marina
           MBIC11017]
          Length = 364

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 127/350 (36%), Gaps = 6/350 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +MR  ++ + L+ L+ L+     ++ ++++  T  PI     +          +   +S
Sbjct: 14  SLMRVGVISLGLLLLWQLQNLVVVLMISIVLASTLAPIIQQVEA-LRAPRWLAVLGVYIS 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   I   L +      +++ +V+ +         +        G     +L       
Sbjct: 73  LIGAAITATLVIGPTITEQIQRIVAALPGYLDALTTLIEDSIMQLGISKPEDLGM----I 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q L + + T         +   +       L    +++  +I   +   D   + Q L 
Sbjct: 129 NQVLDLQALTAWTFRSSQKLILQSVDITKGLLGGVFNLLLALILSAYMLSDSQRLLQGLV 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVIT 248
           +L    +          V + + +   G  ++++  G  +     L G+    + LG I 
Sbjct: 189 ALFPQPWEQRLADQVHPVSQRMGAYIQGRLLVSLILGTTVSIGLKLIGITEVALGLGAIA 248

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   P+     ++ + +    +    +FL   +   +    L P +V   + +P
Sbjct: 249 GLTNLIPFFGPVLGAIPALLVAVAQGGWTVVWVFLLFVLIQNLETYVLDPLVVSPSVNVP 308

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L     ++GG + +G++G  I P  +A   V+ +   +  K + E+ + 
Sbjct: 309 PLYQLLAVLGGTQVLGIIGALIAPPWVAAGGVLIENLYLQPKRDAEQQTQ 358


>gi|296450372|ref|ZP_06892129.1| possible permease [Clostridium difficile NAP08]
 gi|296878784|ref|ZP_06902785.1| possible permease [Clostridium difficile NAP07]
 gi|296260782|gb|EFH07620.1| possible permease [Clostridium difficile NAP08]
 gi|296430212|gb|EFH16058.1| possible permease [Clostridium difficile NAP07]
          Length = 388

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 105/335 (31%), Gaps = 15/335 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIATVSVMCLFIVPL 78
             P +    I +    I   +  +                     ++   + M +  + +
Sbjct: 47  LQPFIIGFAIAYLLNFILKFYEDRIFIKSEKLKKLKQSSKRGLGILLTYATAMLILYLFM 106

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L + + +   +   +   L      +   E +        +  +   
Sbjct: 107 YFVLPQVIESIVGLANDIPMYVNNATKLIDKLMT---DLNLDEQYFNLAVDKWNEFVTYI 163

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T+ I  +            +  L +I  +  L    +      +   ++      A
Sbjct: 164 IKFVTDLIPILGSMLKNVASSIWNIVLGLIVSVYLLIDKEKFYGLSKKITYAVFTEKQAA 223

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +++            G  + +   G++      L  +P  + + VI  I  +IP   
Sbjct: 224 RILELTHRSNYTFGRFLGGKILDSFIVGILTFVILTLVKMPYTLLISVIIGITNIIPFFG 283

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+     S  +++  +   A  L L   I   I    + P ++G  I +      F L+ 
Sbjct: 284 PLFGAIPSTLIVLFVSPIKAFWLLLIILIIQQIDGNIIGPKILGDSIGISAFWILFSLLV 343

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + +G +G+ IG  + A+I  I K+ +    + K
Sbjct: 344 AGKLLGFIGMVIGVPMFAVIYSIIKDIVEGKLDKK 378


>gi|85717448|ref|ZP_01048397.1| hypothetical protein NB311A_10710 [Nitrobacter sp. Nb-311A]
 gi|85695750|gb|EAQ33659.1| hypothetical protein NB311A_10710 [Nitrobacter sp. Nb-311A]
          Length = 360

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 135/345 (39%), Gaps = 5/345 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  +I  +   ++ F + +  ++++    +P++              A I
Sbjct: 13  IIQLVIRLGLLALLIYWTFVLIRPFVSILAWSIVLTVALYPVFDLLSRLLGGRQRLAAAI 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T   + + I P ++L    +  +KE    +   N      P  ++  P        +  
Sbjct: 73  LTFINLGIVIGPAMWLGLNALEGVKEFAVNLGAGNLVIPSPPESINTWPLIGPNVYEFWD 132

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +             +  FA   G+  L + LS+        F +  G  + 
Sbjct: 133 QASINIRAALREVAPYLKPLAGGLLAFAGNAGVGTLKFLLSVALSG----FLFPHGSQLM 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   S    + P   +    +    IR+   G+  IAI + L+ G  + LAG+ S   L 
Sbjct: 189 EAGGSFLYRIVPEQSEHFLALAGATIRAVSQGVIGIAIIQSLLAGIGFELAGLSSAGVLA 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   I++++  GA I    V I++    +   AT L       + I+D  L+P ++   +
Sbjct: 249 LAVMILSIVQIGAAIVLVPVIIWIWTDKDFTTAT-LLTVFLGLVGILDNVLKPLVMKRGL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             P L  F G++GG    G++GLF+GP++++L   +    + + +
Sbjct: 308 TTPTLVIFVGVIGGTLAHGIVGLFVGPIILSLAWELTVAWLRSGR 352


>gi|56413662|ref|YP_150737.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362586|ref|YP_002142223.1| inner membrane protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127919|gb|AAV77425.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197094063|emb|CAR59563.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 134/349 (38%), Gaps = 6/349 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEV 348


>gi|15892901|ref|NP_360615.1| putative permease PerM-like protein [Rickettsia conorii str. Malish
           7]
 gi|15620091|gb|AAL03516.1| putative permease perM homolog [Rickettsia conorii str. Malish 7]
          Length = 356

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 125/355 (35%), Gaps = 7/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++N   I   + + + +     +     P   A II +   P      SK + S+ 
Sbjct: 1   MRKIIMNRTVIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F + I  +  + +F + L  L      ++   ++ +   N +          +P  M   
Sbjct: 61  FASSIIYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQTEI-----LPPIMVKI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++      + +        +  I     R+ +I ++  +  + + I LF+F RD
Sbjct: 116 YSIEPDIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   + SL          +I   +  ++ +   G   I +        A+ + G+  
Sbjct: 176 WAKIIANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDL 235

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG++T  + +IP         +++ +  L  G       + +   +          P
Sbjct: 236 ALLLGILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIIGDKIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 350


>gi|197121208|ref|YP_002133159.1| hypothetical protein AnaeK_0794 [Anaeromyxobacter sp. K]
 gi|196171057|gb|ACG72030.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. K]
          Length = 364

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 118/331 (35%), Gaps = 7/331 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++ F+     A ++            ++        A + TV V+   ++P+  L   
Sbjct: 28  WMVRPFWVAFFLAAVLTAALRHWMEWLSARLRGRRALAAGLLTVGVLLAGVIPVAALGAV 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E  + +  +  A Q        +  +   +        H +         +      
Sbjct: 88  LIREAVDGIQWLRSALQS-----EGVWGLVSRLPGPIEDLAHRAVAALGDPQRQLQQLAG 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                             + L    M+IALFFF  DG  +   +D+         ++ + 
Sbjct: 143 QGGQAAAAVGGVLAATGTFVLQTAMMLIALFFFLVDGQRLIAWVDARVPLRAGQ-FRTLV 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
               +   S        A  + +   + Y++A  P+ + L V+T ++A+IP         
Sbjct: 202 EDFRRTTLSVVAATAATAGIQTVTALAGYFIARAPNPIFLAVLTLLVALIPAVGATAMVL 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            V+      G+  +   L +WGA  + +VD   RP+L+ G + L     FF L+GG+   
Sbjct: 262 VVAALQFATGHTVSGIFLAVWGAAVVSLVDNVARPYLLKGGMALHGGVVFFALLGGLAAF 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G +GL +GP++   +  +         +  +
Sbjct: 322 GGIGLILGPLVATFLVTVLNMYRREFGKPSQ 352


>gi|188589338|ref|YP_001921708.1| permease [Clostridium botulinum E3 str. Alaska E43]
 gi|188499619|gb|ACD52755.1| permease [Clostridium botulinum E3 str. Alaska E43]
          Length = 370

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 99/341 (29%), Gaps = 2/341 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
                +       +P + ALI  +   PI   F  + + S     +     +  + I+  
Sbjct: 31  FFFNIVKHFISIMSPFIYALIFAYILNPIMIIFEKRFKFSRGKSILATYAIITGIIIMFF 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F     +  +  ++ +V    +            P       +    L     L  +  
Sbjct: 91  FFTIPSLVDSIASIIKEVPNYMETIQEWINTAIKNPKLSEL--IVDAGLVDKIELLSIKM 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  +  +        +      +  +  L        S+      + +    +
Sbjct: 149 GNFTITILQGMLGYLLSLTGNLVKIVFGFLIAVYVLSDKDGLLHSLKTITYIILKEKKAS 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K      K+I        I +   GL+      +   P  + L +I AI  MIP   
Sbjct: 209 ELIKACNTYNKMIGVYIGTKAIDSAIIGLIALIGLIIVKAPYALLLSIIVAITNMIPYFG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V   + I  +   A  +F+   +        L P L+G  + +       G++ 
Sbjct: 269 PFIGEIVGAGVCIFVSPMKALVVFILLLLIQQFDAWYLDPKLIGAKVGVKPFWIIMGVII 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G +G+ +    +A I + +   +   K     +  +
Sbjct: 329 GGAFWGPIGMLLASPTLATINIYYIRLVKFYKSKNPSLFKD 369


>gi|19703688|ref|NP_603250.1| permease [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gi|19713810|gb|AAL94549.1| Permease [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 331

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 118/327 (36%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++ V ++ +FI+  L +    + 
Sbjct: 5   KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIVFIIVIFIILSLIVIPEIIS 64

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  I   + +++         +    + +  +  + + T   T  I 
Sbjct: 65  SIKTLNDIYPTISEKVIITGKNIANYLAKKNIYTINMDEIDNYFTNFVSNNTTNITKLIS 124

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I      + + F +  L+ +   + L        ++   +  +       Y  K   + 
Sbjct: 125 SILGSLIDWTIGFTNLFLAFVLAFLILLDKKHLIKTLENMIKIIFGVKNTPYIMKKLSLS 184

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             +      G  I++   GL +     + G P      ++  I  MIP    I    ++ 
Sbjct: 185 KDIFLGYVSGKIIVSTIVGLCVYIVLLITGTPYAALSAILLGIGNMIPYVGSIIGGIIAF 244

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +   I   +    + P ++G  + L        ++      G++G
Sbjct: 245 FLILLVAPIKTIILLVAITISQLVDGFIVGPKIIGNKVGLNTFWIIVSMIIFGNLFGIVG 304

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKE 354
           +F+G  +M+++ + + + +   ++  E
Sbjct: 305 MFLGAPIMSILKLFYVDLLKKAEQGGE 331


>gi|110634895|ref|YP_675103.1| hypothetical protein Meso_2554 [Mesorhizobium sp. BNC1]
 gi|110285879|gb|ABG63938.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 356

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 111/352 (31%), Gaps = 21/352 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    +    + ++ L         A+++   +    S         S      A +
Sbjct: 23  RLFLLAAAIVAAGLLVWSLSNLLLLAFGAILVAVLTRSFASLIEHHTPLRSGASLAAAAI 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++        + L      +  +L+ +V    +                           
Sbjct: 83  AIGLFITGFAILLGSQLQAQFGQLIERVPDLLRALED--------------------RFG 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L E   ++     +    + F         +++ +++A  +   D  S  +  
Sbjct: 123 IDNLEGRLVEQIQQSMARTSLLSNVAGFSSAIFGSLANLLLVMVAGIYLAADPRSYRRGF 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L          +   ++   +R   LG  +     G       WL GVPS +ALGVI 
Sbjct: 183 FLLFPRRARREAAETLDVLYMALRLWLLGQLLSMFLVGAASAVGLWLLGVPSALALGVIA 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++  +P   PI   A ++ + +  +   A  + L   +   +    + P +    ++LP
Sbjct: 243 GLLEFVPVIGPILGAAPAVAVGLAESPVTAAWVALLYLVIQQLEGNLIMPLIQQRMVRLP 302

Query: 309 FLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIMAIKENKEKISSN 359
              T F ++G     G LG+    P+L+ +   + K  +    +   ++   
Sbjct: 303 PALTIFAIIGFGLLFGPLGILFATPLLVVVFVSVKKLWVRDTLDEDTELPGE 354


>gi|331092554|ref|ZP_08341375.1| hypothetical protein HMPREF9477_02018 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400666|gb|EGG80272.1| hypothetical protein HMPREF9477_02018 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 383

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/348 (15%), Positives = 110/348 (31%), Gaps = 14/348 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST---------FLAVIATVS 69
           +    L ++     P L    I F           K   + T             I+ V 
Sbjct: 30  VFFELLGYVLNIILPFLIGAAIAFVLNVPMHFIEEKVFGNKTAKSSKFLQKIARPISLVM 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWTKHLS 128
            +      +  + +    E+   ++ +    Q     V +W  DI         W ++L 
Sbjct: 90  TLLFVFGIVCLVVFIVAPELANTIAGLGKTIQTFIPEVQKWAEDIFHNNKEILSWIQNLE 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I        +G   +           +    +     I   +       ++ Q+
Sbjct: 150 FNWDKMIAGGIDFFKSGAGSVLDSTFAVAKSIVSGMTTFAIAFIFACYILLQKEKLNVQV 209

Query: 189 DSLGEHLFPAYWKKISRIV----PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             LG    P  W +I   +     K   +   G  + AI  G +   A  +  +P  + +
Sbjct: 210 KKLGYAFIPRDWVEILIAISSMAYKTFSNFLTGQCVEAIILGSMFFVAMTIFNMPYALLV 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           GV+ A  A+IP        A+   L++  N   A    +   +   I    + P +VG  
Sbjct: 270 GVLIAFTALIPIFGAFIGCAIGAILILMVNPVQALGFLVLFFVLQQIEGNLIYPHVVGNS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + LP +     +  G   MG++G+ +   + +++  + K  +    E 
Sbjct: 330 VGLPSIWVLVAVSVGGSLMGIVGMLVFIPISSVVYTLLKGIVNRRLER 377


>gi|255693730|ref|ZP_05417405.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
 gi|260620481|gb|EEX43352.1| putative membrane protein [Bacteroides finegoldii DSM 17565]
          Length = 377

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 114/344 (33%), Gaps = 12/344 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
           +++  IL+ +  L G   P   A +I +  +P+   F  K            A   +  +
Sbjct: 19  VLVIGILMLIERLSGVLLPFFIAWLIAYMIYPLVKLFQYKLRLKSRILSIFCALFLISAI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + EM  +   +V    +G       +         +L   +    +  
Sbjct: 79  GVTVFYLLVPPMISEMSRMNDLLVTYLTNGAGNNVPKNLSEFIHEYVDLQALNRILSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    IF  + + +  +     F   D  +I++    L  
Sbjct: 139 ILAAIKDTVPRLWTLLAESLNILFSIFTSFIILLYVV-----FILLDYEAIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   + R V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVRDVQDGMNKYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     A+   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFFPTVLLAILKAADTGENFWIIIACALAVFAVVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   L      MG+LG+ I   L  L+   ++  I+  ++
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEK 357


>gi|117921351|ref|YP_870543.1| hypothetical protein Shewana3_2910 [Shewanella sp. ANA-3]
 gi|117613683|gb|ABK49137.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 369

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 123/343 (35%), Gaps = 4/343 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   M++ +          F   +L A+I+    +P +     +  +     A +  V  
Sbjct: 22  IKFGMLLALASFCYTIFSPFLNIMLWAVILAVVIYPFHQRIAKRLSDKQGRAATLLIVIG 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++P + +       M  LV +V             +++IP        +    S  
Sbjct: 82  LMILVLPTIMMVSSMTDNMGSLVERVNQNTLEVPTPKESIANIPFVGAKIYDFWLKASTD 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + S      +    +    +      L    S I   I + + +    S ++    
Sbjct: 142 LPSLVKSLQPHLGDAAKQVIHALASISASLLMSMFSFIIAGIMMAYGHAGAQSSARIATR 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P    K+  I    IR+  LG+  +A  + L++G     AG+P      ++  I
Sbjct: 202 IAG---PERGAKLVNICSSTIRAVALGVIGVAFIQALLIGIVMTFAGIPLVGIFFILVLI 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +    A +       Y+ + G+     + ++    I    VD  L+P  +G  +  P 
Sbjct: 259 LGIAQIPALLVTLPAIAYIWMAGDNGTVGSIIYTVLLILAGAVDNVLKPIFLGRGVDAPM 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                G +GG+ T G+LG+FIG  L+++   I+   +    E 
Sbjct: 319 PVVLIGALGGMATSGILGMFIGATLLSIGYRIFMMWVDEGLEE 361


>gi|114047909|ref|YP_738459.1| hypothetical protein Shewmr7_2417 [Shewanella sp. MR-7]
 gi|113889351|gb|ABI43402.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 366

 Score =  115 bits (288), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  + + LYF  G  AP+L AL++ F      +  + K   + T 
Sbjct: 10  QERFSDPQAVTLLAILVGLGLMLYFAGGLLAPLLVALVLAFLLEWPVAQML-KLGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + ++    L      +   L++ +      G+   + L+       +SE
Sbjct: 69  GASLVLVLFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTLQGLATQYPQFVSSE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QLNL-------MVAELKKLLDTQHLLDIAKQLIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                +K+   + + I +   G  I  +  G+     +   G+   
Sbjct: 182 DQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYIFFAFMGLRYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLMLGYGIIQALDGNVLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G+ G+F    L +L+  +         E
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPKTEIE 352


>gi|161503539|ref|YP_001570651.1| putative inner membrane protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864886|gb|ABX21509.1| hypothetical protein SARI_01616 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 372

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/349 (18%), Positives = 134/349 (38%), Gaps = 6/349 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQALLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPNLAWLNTIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 300 IRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEV 348


>gi|148655693|ref|YP_001275898.1| hypothetical protein RoseRS_1556 [Roseiflexus sp. RS-1]
 gi|148567803|gb|ABQ89948.1| protein of unknown function UPF0118 [Roseiflexus sp. RS-1]
          Length = 407

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 109/337 (32%), Gaps = 17/337 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   ++  +    +  L     P ++A I  +   P+ +    +          +  +
Sbjct: 15  KLITVALLGALFFWLIRGLGNVLVPFVAAAITAYLFNPLITWLNRRTRIGRAIWIGVLYI 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +       L      E   L +++             L  +       E+   + +
Sbjct: 75  VIGIIIYGLWRTLGPAIEREYSGLQAQIPHTLNLVQQELLLLKHVSIAGIDIEVAPVNEA 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++L          +    +P        I  +  L  +  +I  F+   +   I +  
Sbjct: 135 LREAL---------ADFGRRLPEHVPHLVAIAFETLLLFVTYLIVTFYLLLEAPRIVEWT 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A  + +   + +++     G  ++      +   A  + GV   + LG++T
Sbjct: 186 YGLVPAPYRAEIRALGSQIDRILAGYVRGTLMLIPIMATLTTIALMILGVRYALVLGIVT 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLRPFL 300
            I+  IP   P S   ++I + +              A  + L   +     D  + P +
Sbjct: 246 GILETIPLIGPWSAAGIAIIVALFQAPAPWGWPAWLIAGAIGLTYFVLRMFEDNFIIPHV 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           VG  + L  +   F ++ G    G  GLF+   + A+
Sbjct: 306 VGPAVHLHPMLVIFAILAGGALGGPFGLFVSIPVAAI 342


>gi|117928907|ref|YP_873458.1| hypothetical protein Acel_1700 [Acidothermus cellulolyticus 11B]
 gi|117649370|gb|ABK53472.1| protein of unknown function UPF0118 [Acidothermus cellulolyticus
           11B]
          Length = 429

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 107/352 (30%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++ + +L     ++    P L+A+++     P       +          +  +
Sbjct: 60  RLLVTGIVGYFLLRFFIRIEIVVLPFLAAMVMTALLRPPCLWLERR-GLPRLIATWVTFL 118

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               + +     + Y    E   LVS +   +                    +   + + 
Sbjct: 119 LAFIVVLGVGTAVVYRTTAEWHTLVSDLSATSDKVRHWLATGPLHLKSTNLKDYQQQFVD 178

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               +         I  +    I+      FF   +G  I    
Sbjct: 179 ------------ALKTHRGLVISEVVNGASIAGEVAAGIVLTAFITFFLLYEGERIWTFC 226

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                          +R   + +     G  +IA+   +V+  +  +  VP    L ++ 
Sbjct: 227 LIPFRPPTARRVDLAARAAWRTLAGYIRGSVLIALFHAVVIAISLLILHVPLVAPLALVV 286

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I + +P    +    +S+++ L    +     L +   +E  +    L+PF++   ++L
Sbjct: 287 FITSFLPLIGVLIGGGLSVFVTLGTQGLTAGIILLIILVVEHQLEGHFLQPFIMSRAVRL 346

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     L  G    G++G  +   ++A++   W        E    +++ 
Sbjct: 347 HPLAVALALAAGGVLGGIIGAILAVPVLAMLKSAWPHLWAPGLELPPTVAAE 398


>gi|315503542|ref|YP_004082429.1| hypothetical protein ML5_2759 [Micromonospora sp. L5]
 gi|315410161|gb|ADU08278.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 452

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 103/349 (29%), Gaps = 18/349 (5%)

Query: 12  MRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++ I+  +L      +     P+  AL++     P     +  +    +    +  
Sbjct: 107 WRLIVIGIVTWALLRIVGTISIVIIPLTVALLLSALLAPAVGWLLRAR-LPRSLATAVVL 165

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  +   +  L  +    +  + EL  K     +                W         
Sbjct: 166 VGGLAAVVGTLTLVVNEFIKGVPELSQKSSEGVRQIQD------------WFKTGPLHLS 213

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +  I           +     A        +     + ++ A FFF RDG +I + 
Sbjct: 214 DSQLNRYIDEAQNWINGNTERFTSGAISTAATLAEVLTGTVLVLFATFFFLRDGNNIWRF 273

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L             R     + +      ++A  + + +G    L  +P    L  +
Sbjct: 274 LVRLLPVAARWKVDDAGRASWATLGAYVRATVLVAFIDAVGIGIFLVLFDIPFAFPLAAL 333

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP     +S     +  L+      A  +         +    L+P ++G  + 
Sbjct: 334 VFLGAFIPIVGAFLSGVVAVLVALVDSGPVTALIILGAVIGVQQVEGHVLQPLIMGRAVA 393

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  L    G+  GV   G+ G  +   L+A++    +        +   
Sbjct: 394 IHPLAVIIGIAAGVVLAGIAGALVAVPLIAVLNTAVRRLAARTVPDTPP 442


>gi|219850625|ref|YP_002465058.1| hypothetical protein Cagg_3786 [Chloroflexus aggregans DSM 9485]
 gi|219544884|gb|ACL26622.1| protein of unknown function UPF0118 [Chloroflexus aggregans DSM
           9485]
          Length = 386

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 126/358 (35%), Gaps = 17/358 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++ +I+V L+ +     P + A+I  +   P+      +   S     VI  V
Sbjct: 15  KWITSAIVVGLIIVFLHEITHILPPFIGAIITAYLFNPLIGWLHRRTGISRAIWIVILYV 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +       L+   + + ++L +   +  +           I  G     L      
Sbjct: 75  VAGSVLYSLFTALWPRIVQQSRDLAASAPMIIRELTIWFEQNESIVLGDMVISL------ 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        L ++   ++     +     L+  + ++  +I  F+       + +  
Sbjct: 129 ---APLEAQVIGLISDVAGWLSGNVPKIVFSALESVIYLLVYLIITFYLLLQAPQLKEWA 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L    +      +   + +V  +   G  I+ +   ++L     +  VP  + + + +
Sbjct: 186 RNLIPSPYRREIAHLGYQIDRVFNAYIRGQLILIVIMSVLLYIPLSILQVPYALVIAIAS 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTLRPFL 300
            ++ ++P   P S   +++ + +          N+     L +   +   I D  + P +
Sbjct: 246 GVLEILPIIGPWSAAGIAMTVALFQPVTPFGLSNVSLVILLGVIYFVLRQIEDHFIIPNV 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G  ++L      F ++ G    G  GLFI   + A+I +I       + +  E  +S
Sbjct: 306 MGPLVRLHPGVVIFAILAGGALAGAFGLFISIPIAAVIRIILSYLYRKLTDQPEPPAS 363


>gi|307687574|ref|ZP_07630020.1| hypothetical protein Ccel74_05413 [Clostridium cellulovorans 743B]
          Length = 383

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 116/343 (33%), Gaps = 14/343 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-------------KEESSTFLAVI 65
            +L  L +      P +    I F      + F +K             ++ +  F  ++
Sbjct: 30  AVLGVLSYCYTLLLPFILGGCIAFILNIPMNYFSNKFSRVQGNKLGSLVRKGNKIFSLIL 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWT 124
           + V V+ + I+ L  +        K L +    A+         +  +   +     +  
Sbjct: 90  SFVLVLGVIILVLALVIPQIAETAKRLPTTFENASVIVKSWIENVDWLSNDIINKINVIE 149

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +   +    S      + I      A+ F    +++ L ++F I  L          
Sbjct: 150 IDWNSVFNEIKSSVFNGAGSMISSTIGVATSFLNGVVNFSLGLVFSIYLLLDKENLSKQC 209

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +           +I+ +  K   +   G  + A+  G +      +   P  + +
Sbjct: 210 KKILYAFLPKEKVVSILEIASLANKTFSNFLTGQCVEAVILGFLFFVTMSILHFPYAMVV 269

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V  A  A+IP         +  +L++  N   A    +   +   I    + P +VG  
Sbjct: 270 SVFIACTALIPVFGAFIGGGLGFFLIVMDNPTKALLFLVLFLVLQQIEGNLIYPRVVGNS 329

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           + LP +     +  G + MGL G+ I   L ++  V++++++ 
Sbjct: 330 VGLPSMWVLVAITLGGKLMGLTGMLIFIPLCSVAYVLFRKAVN 372


>gi|229086022|ref|ZP_04218243.1| hypothetical protein bcere0022_26220 [Bacillus cereus Rock3-44]
 gi|228697232|gb|EEL49996.1| hypothetical protein bcere0022_26220 [Bacillus cereus Rock3-44]
          Length = 376

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 37  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLERK-GVSRIVSIASIYI 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            VM LF+  ++ +      ++  L+  +              +   G         + L+
Sbjct: 96  FVMGLFVFLVVTVIPIMKDQINALIDNLPYFGHE----IERAARRFGESNIIGKIQESLN 151

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   T   TN +  +    + F     +  L+ + +   LF+  +DG  + +  
Sbjct: 152 IDVGSIVKDSTMNFTNSLSSVTGNVTGFLSTLTEVVLTFVMVPFILFYLLKDGEQLPKYF 211

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       K I   +   I S   G  I+++  G++L   Y + G+   V L V+ 
Sbjct: 212 LRAISEQRQPAAKLILDDMHYAISSYIRGQIIVSLFIGIMLLIGYVIIGIKYAVLLAVLA 271

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   I      K + P ++G  + + 
Sbjct: 272 MIVNVVPYVGPIIAIIPALIIAFIDSPAMIVKVIIVMMIVQLAEGKFISPQVMGKKLDIH 331

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 332 PITIIFIILTAGNLFGMMGIILAIPGYAILKVLVTH 367


>gi|218440376|ref|YP_002378705.1| hypothetical protein PCC7424_3442 [Cyanothece sp. PCC 7424]
 gi|218173104|gb|ACK71837.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 397

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/317 (17%), Positives = 106/317 (33%), Gaps = 9/317 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              + +  F  +L A ++ F      +   SK     +  A++  +  +  F+   L L 
Sbjct: 47  IFGYFQSLFVIILLASVVAFLLSYPVNWLESK-GVKRSQAAIVVFLFTVLTFLAVGLTLV 105

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                + ++LV+++      G      L++              L    +          
Sbjct: 106 PVAYTQAQQLVARLPEWLDSGQHQLMMLNERVDEWGLP----LSLDGLIAQINSRLAAEL 161

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +        A    +  +   L ++  II  F+       I Q L            + 
Sbjct: 162 QSLAGRTLNIAVSLTVFTVVKLLDVLLTIILTFYLLLHSRDIWQSLIEWLP---KPIQRP 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
            S+ +    ++ FLG  I A    + L   + L  VP  +  G+   +MA+IP G  +  
Sbjct: 219 FSQTLRSSFQNYFLGQIISATCMAVGLTGGFLLLKVPFGLLFGLSIGLMALIPFGGSV-G 277

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                 L+   ++  A  +     +   IV+  + P ++G    L        L+ G R 
Sbjct: 278 IVTVTLLIALRDVGLALQVLASALVVQQIVENGIAPRILGSVTGLNPFWILLALLSGARI 337

Query: 323 MGLLGLFIGPVLMALIA 339
            GLLG+ +      +I 
Sbjct: 338 GGLLGVIVAVPSAVMIK 354


>gi|228921575|ref|ZP_04084896.1| hypothetical protein bthur0011_25770 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838092|gb|EEM83412.1| hypothetical protein bthur0011_25770 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 264

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 91/264 (34%), Gaps = 4/264 (1%)

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +LV  +    + G    + LS      W S                +      +  + I
Sbjct: 1   MDLVKNMPGYIKEGKVYIQELSHHRLFEWLSTQNY----VSIETIEKNAIEYLKDIPNTI 56

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
              A+    I  +  L +  +   LF+ ++DG +   +  SL    +     +I +   +
Sbjct: 57  TSSATALFGIITNVALVVFTVPFILFYMFKDGHAFPGKAVSLLPESYREEGLRIIKETNE 116

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            + +   G  ++ I  G      Y +  +P    LG+I A   +IP   P    A ++ +
Sbjct: 117 TLSAYIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIV 176

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +   A  + +   I        + P ++   + +  L     ++G     G++G+ 
Sbjct: 177 GLFVSPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGIIGMI 236

Query: 330 IGPVLMALIAVIWKESIMAIKENK 353
           +   + A+   +    +   K  +
Sbjct: 237 LAVPVYAVTKTVVSNLVRLFKTKR 260


>gi|159029048|emb|CAO90034.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 358

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 121/328 (36%), Gaps = 5/328 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ F   +L   I+    +P++          +    V+ T+  + + I P+  +    
Sbjct: 27  LLRPFLTMILWGAILAIAWYPLFLWLKKLLAGRAKLATVLLTLLCLGIIIGPVSGIAAVL 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              ++ L   +        P P  ++  P          +  S                 
Sbjct: 87  AGNLRTLAEYIDTGAAVIPPPPTDVATWPLIGERIASLWQQASDNTGQFFQRFEPQLKEL 146

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                  A+  G+  L + +SI+              +++  ++ L E + P     ++ 
Sbjct: 147 GKISLSLATSTGLTVLKFIVSILIAAA----LTLSAKNLTHLMNRLAEKIAPGRGIALAS 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +    +R+   G+  +AI + L++G      G P+   L  +T I+ ++  G  +     
Sbjct: 203 LTASTVRNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTFLTLILGILQIGPGLIVLGA 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I+  +      A    LW  I   +VD  L+P L+G  + +P +    G+ GGV   G+
Sbjct: 263 LIHAWVTLPNSIALLFTLW-MIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYGI 321

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           +GLF+GPVL+ L   + +  I       
Sbjct: 322 IGLFVGPVLLGLCYELVRAWIGEDSSEP 349


>gi|260588950|ref|ZP_05854863.1| putative membrane protein [Blautia hansenii DSM 20583]
 gi|260540729|gb|EEX21298.1| putative membrane protein [Blautia hansenii DSM 20583]
          Length = 379

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 114/347 (32%), Gaps = 16/347 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE---------ESSTFLAVIATVSV 70
           +     F+     P L    + F      S    +                  V+A + V
Sbjct: 31  VAAGFSFVVSIVFPFLLGAAMAFILNVPMSFMEKRLFSKTKGKAKKLKRPICLVLAILFV 90

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  + LL +       +  L   +  A    I + RW  DI       E+W   L   
Sbjct: 91  VAILWIVLLVVIPEVASTVASLSVNIEAA---LIKLQRWAMDIFEDNKQIEVWIASLQFD 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I +      NG   +           ++  ++     +   +       ++ Q+  
Sbjct: 148 WDGIIHTAFGFLKNGAGNVLNSTMTVAKTVINSVMNFCVAFVFACYILLQKEKLAVQIRK 207

Query: 191 LGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +    F          I+ +  K   +   G    A+  G +   +  +   P  + +GV
Sbjct: 208 ILYAFFSKKVVTKVLDIASLSYKTFANFVTGQCCEAVILGTMFFISMSILRFPYALLVGV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + A  A+IP         +  +L++  +   A    +   +   +    + P +VGG + 
Sbjct: 268 LIAFTALIPIFGAFIGCFLGTFLILVADPMKAIAFVILFLVLQQVEGNLIYPHVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LP +     +  G   MG++G+ +   + +++  +++E +    + +
Sbjct: 328 LPSIWVLVAVTVGGSLMGIVGMLVFIPICSVLYALFREMVYKRLKER 374


>gi|323248844|gb|EGA32770.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
          Length = 338

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 103/331 (31%), Gaps = 12/331 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   +   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           L    + L  L     +V      G  G+F 
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFF 330


>gi|117920098|ref|YP_869290.1| hypothetical protein Shewana3_1651 [Shewanella sp. ANA-3]
 gi|117612430|gb|ABK47884.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 366

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  + + LYF  G  AP+L AL++ F      +  + K   + T 
Sbjct: 10  QERFSDPQAVTLLAILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQML-KLGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + ++    L      +   L++ +      G+   + L+       +SE
Sbjct: 69  GASLVLVLFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTLQGLATQYPQFVSSE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  + L               I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QLNLMVAELKKLLDTQHLLD-------IAKQLIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                +K+   + + I +   G  I  +  G+     +   G+   
Sbjct: 182 DQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYIFFAFMGLRYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T   + +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPIMLVAFFQWGFSSEFGYLMLGYGIIQALDGNVLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G+ G+F    L +L+  +         E
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPKTEIE 352


>gi|325110550|ref|YP_004271618.1| hypothetical protein Plabr_4019 [Planctomyces brasiliensis DSM
           5305]
 gi|324970818|gb|ADY61596.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 523

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 87/264 (32%), Gaps = 11/264 (4%)

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
           P     +D+    +  E     L    +   + + +    G          F    L   
Sbjct: 257 PTLEDQTDLMEPKYIFEPQIIKLDPSTASSQVRQRYGGVLGAYSPVEIFRSFLDSVLGVF 316

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
              + + + L F   +     Q+L+ L               +   IR      T++++ 
Sbjct: 317 NYTLIVFLMLAFLLLEWSRFGQKLERL--PGNTQSHISQVTQILDSIRRYMFIKTLVSLL 374

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFL 283
            GL++     L G    +  G +  +   IP    I      ++++L+     +A  + +
Sbjct: 375 TGLLVTIWLMLLGTNYAILWGTVAFLFNYIPTIGSIIAGIVPTLFVLVDQGPVDAAAVGV 434

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL-MALIAVI- 341
              +  F+V   L P ++G  + L     F  LV     +G +G+ +   L MA+   + 
Sbjct: 435 AFLVVNFLVGNVLEPRIMGEGLGLSTFVVFLSLVFWGFVLGPVGMLLAVPLTMAIKIALG 494

Query: 342 ------WKESIMAIKENKEKISSN 359
                 W   ++    + E   + 
Sbjct: 495 SDERTRWLAFVLGASASPETAEAE 518



 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 5/88 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P L A+ I      I S    +          +A   ++ +  V    +      
Sbjct: 32  RIIVIPFLLAIFIAVILSAILSWLRER-----NIKTSVAVSLMILILGVMGTLMVLVVGA 86

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPG 115
            + ELV K+   N       + L+D   
Sbjct: 87  SVNELVRKLPQINTAVKAQEQVLTDWME 114


>gi|170783027|ref|YP_001711361.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157597|emb|CAQ02795.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 381

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 103/336 (30%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +   +  L  +K    P L  L++     P+ ++   ++   +        +
Sbjct: 43  RLLVIGIAVAAAVWLLVAVKEVVIPFLIGLLVCALLQPLVAALRRRRW-PAWLAITSTLL 101

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +    +L L       +  L  + +   +    +             ++     + 
Sbjct: 102 GTAVVISGLVLLLVAQIRTGIPTLQREAMERFESVRDLL------------AQPPFNVVP 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S      N  + +       G+         +     +     DG  I + +
Sbjct: 150 SDYDALLASAGKALENSREALLTGVLDAGLGVGHLVTGALLAFFTIVIVLIDGRGIWRFV 209

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+             R     + +       +A G  + +G A WL G+P  + + V+ 
Sbjct: 210 VSVFPRRARPAIDGAGRAGWGTLSAFTRVQIFVAAGNAVGIGIAAWLLGLPLAIPIAVLV 269

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP    I       +  L+      A  + +       +    L+P ++GG + +
Sbjct: 270 FLASFIPVVGAIVSGAFAVVIALVFVGPLQAAIMLVAVIGVHLLESHVLQPLVMGGAVHV 329

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     +  G    G+ G       +A + V+ +
Sbjct: 330 HPLAVVLSVAAGSYVGGVAGALFAVPAVATLNVMVR 365


>gi|255656194|ref|ZP_05401603.1| hypothetical protein CdifQCD-2_10974 [Clostridium difficile
           QCD-23m63]
          Length = 388

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 105/335 (31%), Gaps = 15/335 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIATVSVMCLFIVPL 78
             P +    I +    I   +  +                     ++   + M +  + +
Sbjct: 47  LQPFIIGFAIAYLLNFILKFYEDRIFIKSEKLKKLKQSSKRGLGILLTYATAMLILYLFM 106

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L + + +   +   +   L      +   E +        +  +   
Sbjct: 107 YFVLPQVIESIVGLANDIPMYVNNATKLIDKLMT---DLNLDEQYFNLAVDKWNEFVTYI 163

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T+ I  +            +  L +I  +  L    +      +   ++      A
Sbjct: 164 IKFVTDLIPILGSMLKNVASSIWNIVLGLIVSVYLLIDKEKFYGLSKKITYAVFTEKQAA 223

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +++            G  + +   G++      L  +P  + + VI  I  +IP   
Sbjct: 224 RILELTHRSNYTFGRFLGGKILDSFIIGILTFVILTLVKMPYTLLISVIIGITNIIPFFG 283

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+     S  +++  +   A  L L   I   I    + P ++G  I +      F L+ 
Sbjct: 284 PLFGAIPSTLIVLFVSPIKAFWLLLIILIIQQIDGNIIGPKILGDSIGISAFWILFSLLV 343

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + +G +G+ IG  + A+I  I K+ +    + K
Sbjct: 344 AGKLLGFIGMVIGVPMFAVIYSIIKDIVEGKLDKK 378


>gi|152976804|ref|YP_001376321.1| hypothetical protein Bcer98_3102 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152025556|gb|ABS23326.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 352

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P   A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 43  ITPFFIACFIAYLLHPLIEKLH-KQGMPRTLAILLIYILFFGGLGYGIYKGTPVVISQLQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 102 EMNKQFPEFMKMYDSWMDGVTE----------QTDNFPSFIHDKVKQIFVGIEMKIQSLL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D  +       L  + +    + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGAFYHVFWKLTPYKWRDTGQILAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   A+W  G+   + LG++  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSALAFWFIGMKYPLLLGIVVGVTDIIPYFGPILGAIPTLMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVVIMLALLVGGEVGGIVGLLI 331

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 332 SVPILAVIRTVV 343


>gi|219854560|ref|YP_002471682.1| hypothetical protein CKR_1217 [Clostridium kluyveri NBRC 12016]
 gi|219568284|dbj|BAH06268.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 346

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 13/321 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +  L+     +L + +I +T  PI    ++K   S    A I    V    I     L  
Sbjct: 33  VSVLREIIYLILISFLISYTLKPIQKIMVNK-GISEKISAFILIALVGLFIISIFAILIP 91

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               E   L + +         +   L  I G      L                     
Sbjct: 92  SLFKESLSLNNAIYSIQNLVDNIYGKLKLIQGNRTIHVLINNFNRKIDGE---------- 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  +        M      L ++ + +  ++F  +G  I++++ S          K I
Sbjct: 142 --VTVMFTRIFDSLMKMGQNILYVVVIPVITYYFLSEGECINEKVLSTFPIKSRGIIKNI 199

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           S    K++    +   +++   G+V      +  V   + L V+ A   +IP   PI   
Sbjct: 200 SCHADKILGRYIISQLMLSGFIGIVTFFILLILKVDFPIILSVLNAFFNIIPYFGPIFGA 259

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +  +   A    +   +   I    L P +    I +  L     L+ G    
Sbjct: 260 IPAIAIALIESPEKAIWTAICLYVLQQIEGNILSPKVTADSISMHPLVVILLLIIGGEIA 319

Query: 324 GLLGLFIGPVLMALIAVIWKE 344
           G +G+ +   L  +I V++++
Sbjct: 320 GFIGMVLAVPLGVIIKVMYED 340


>gi|300312358|ref|YP_003776450.1| hypothetical protein Hsero_3054 [Herbaspirillum seropedicae SmR1]
 gi|300075143|gb|ADJ64542.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 374

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 120/351 (34%), Gaps = 11/351 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFL 62
           +   + +    ++ ++L   Y +      ++ A+   +  +P+       +      T  
Sbjct: 6   LRVARIVWTVFLVALLLYVTYTISATVLVLVFAVFFSYLVYPLVELIERVRPPRVPRTVS 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  V  + +              E   L  ++    +    V R           + +
Sbjct: 66  IALVFVLAIAIVATVATIFGARIQEEALRLSEQLPALLRSNDAVSRLPLPGFAEPLRARI 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    +    +    K  G+           M      + ++ + +  F   ++  
Sbjct: 126 LGFVRDQLAAGTDQAMPLAKQFGVG---------VMHAASNLIYLVLVPVISFLLIKEAP 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ +++ S         W  I   +  ++      +  +++   +    A+ L GVP  +
Sbjct: 177 AMREEMLSWMSRANRKLWDGIVTDLDVLLSRYVRALLFLSVATFVAYSIAFSLMGVPYAM 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  + A++  IP   P++ +A ++ +       +   L  +        D  L P+L+ 
Sbjct: 237 LLAGLAAVLEFIPFAGPLAASAAALVVAGFSAYDHLLWLVGFIVAYRVFQDYVLNPYLMS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +++  L    GL+ G +  G+ G+F+   +MA + +I+  +  A K  +
Sbjct: 297 EGVEVSPLMVILGLLAGDQLGGVAGIFLSVPVMAALKIIFTRASAAQKARR 347


>gi|255281982|ref|ZP_05346537.1| putative membrane protein [Bryantella formatexigens DSM 14469]
 gi|255267655|gb|EET60860.1| putative membrane protein [Bryantella formatexigens DSM 14469]
          Length = 413

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 115/332 (34%), Gaps = 11/332 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMCLFIVPLLFL 81
            P++    + +    +   +  +           +       V+A  ++  + ++ +  +
Sbjct: 78  TPLILGCAVAYIVNILMDFYEKRFFVHSDRAIIGKSRRPVCMVLAFATLAAIIVLVIGLV 137

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                  ++ ++S +    +  +     L  +P  +  +       S    L     + +
Sbjct: 138 VPQLYSCIQLILSTLPGVMEDLVEAVEKLDVLPEDVMNAFSNVDWQSRIGELVKGLLSGI 197

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             N +D +    S      +   ++IIF I  L    + G    + +    +        
Sbjct: 198 -GNVMDMVISVVSSAVSRLVTLFMAIIFAIYLLLGKEKLGSQAKRLMRRYMKKRPYETCL 256

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
               ++    R+  +G    A+  G++      L  +P    +G + A  A+IP      
Sbjct: 257 HFFSVMNDCFRNYIVGQCTEAVILGVLCTVGMLLMRLPYAAMVGALVAFTALIPVAGAYI 316

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V  ++++  +   A    ++ A+   +    + P +VG  I LP L     +  G  
Sbjct: 317 GAGVGAFMILTVSPAKAIIFLIFIAVLQQVEGNLIYPRVVGSSIGLPALWVLAAVTIGGG 376

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            MG+ G+ +G  + A +  + +E +    + +
Sbjct: 377 IMGIGGMLLGVPIAATVYQLLREDVRKAPKAE 408


>gi|197106263|ref|YP_002131640.1| hypothetical protein PHZ_c2802 [Phenylobacterium zucineum HLK1]
 gi|196479683|gb|ACG79211.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
          Length = 355

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 43/339 (12%), Positives = 99/339 (29%), Gaps = 19/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++       +   ++ L         A++       +    +        +    A V 
Sbjct: 12  RLLTVAAFVALGALVWKLADVILLAFGAVLTAVLLHALADPLVRYARLPRPWALTAAVVG 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +       L        L++  L   +  A +                       +    
Sbjct: 72  LTAATWGTLYLFGREAALQLAALSELLPNAWRALQ-------------------GELSRS 112

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                IL +     +    I +   R          + + ++ A  +   +  +    L 
Sbjct: 113 VLGAYILDDLRSLQHADGLIVQLGPRLIRGSASAGAAAVIVLFAGLYLAYNPSTYLGGLL 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         +++ +   K +    +G  I  +  G+  G   WLAGVPS +ALGV+  
Sbjct: 173 KLVPARGRQRAEEVFKACGKALNRWLVGQLISMMLVGVTTGVGLWLAGVPSPLALGVVAG 232

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +   +P   P+      + +             +     +      + P ++   ++LP 
Sbjct: 233 LGQFVPVVGPMVSMIPGLIIAAGAGWETLAWTAVVYVGAMQAEANVITPLVLRQMVELPM 292

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             T F ++     +G LG+     L  +  V+ +   + 
Sbjct: 293 AVTLFAVLAMGVLLGPLGVLFATPLAVVAYVVVRMIYVE 331


>gi|306783812|ref|ZP_07422134.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308331376|gb|EFP20227.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
          Length = 385

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/347 (17%), Positives = 126/347 (36%), Gaps = 5/347 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  +  +  + +  +L   YFL+ +F  ++ A +  +   P++  F  +   ++   A  
Sbjct: 7   LTQKRALAILTLIALLFGAYFLRNYFVLIVVAAVGAYLFTPLFKWFTKRF--NTGLSAAC 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWT 124
             +S +   +VP+  L    ++++  +V  V    +   +                 +  
Sbjct: 65  TLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRTTDLSTLGDKILQFVNGLFDRVPF 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H++        +   +  N  +++  F             S I  +        +   +
Sbjct: 125 LHITVTADALRKAMISVAQNVGEWLLHFLRDAAGSLAGVITSAIIFVYVFVALLVNREKL 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +  L   L         + +  ++R T  G  +IA  +G+   ++ ++AG      +
Sbjct: 185 RTLIGQL-NLLGEDVTDLYLQKMGSMVRGTVNGQFVIAACQGVAGAASIYIAGFHHGFFI 243

Query: 245 GVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I    +++IP G  I      I ++  GNI     + LW  + +  +D  LRP LV  
Sbjct: 244 FAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHLLVVTNIDNVLRPILVPR 303

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +L        +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 304 DARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIVTTIDVYLAVYK 350


>gi|326317957|ref|YP_004235629.1| hypothetical protein Acav_3160 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374793|gb|ADX47062.1| protein of unknown function UPF0118 [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 434

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 106/326 (32%), Gaps = 15/326 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +    F P++ ++++     PI ++             V+    V  L         +  
Sbjct: 98  WASAVFIPLMLSVLLTIALQPIVTALRRWYIPRWLGAGVLLLGIVGGLGGT-----AWSL 152

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET------ 139
                ELV  + +A +      R     P  +   +     +    +  I  +T      
Sbjct: 153 SDGAAELVDSLPVAARKVRDAMRMNMRGPSPLDTMQKAASQIEQAATESIPPQTRRGVQR 212

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH--LFP 197
            +       I  +     M  +     +  ++   FF    G    ++L  +        
Sbjct: 213 VVIERAPFNIRDYVWTGTMGLVSAAGQLTVVVFLTFFSLASGNLFRRKLVRIAGQSLERR 272

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               ++   +   I+   L     ++  G+  G AY L G+ +    GV+  ++ + P  
Sbjct: 273 KITMEVLDDITGQIQRYLLVQVATSVLVGIGTGVAYALLGLENAAVWGVVAGVLNLAPYV 332

Query: 258 APISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             I  T  S  +  L  G +  A  +     +   IV   L P+L     ++  +  F  
Sbjct: 333 GSIVVTGASALVAFLQFGTVDMALAVGGASLLIHTIVGNLLTPWLTSRTSRMSPVAVFVS 392

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      GL G+ +G  +M ++  +
Sbjct: 393 VLAWGWLWGLWGVLLGIPVMMVVKAV 418


>gi|163746940|ref|ZP_02154297.1| Conserved hypothetical membrane/transport protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380054|gb|EDQ04466.1| Conserved hypothetical membrane/transport protein [Oceanibulbus
           indolifex HEL-45]
          Length = 371

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 106/336 (31%), Gaps = 13/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++  + V+ YF K    P+L   II  T  P+  S             ++   
Sbjct: 10  RRLLEVLVLIALFVTAYFAKDLLLPILLGFIIALTLSPLIRSLEKLGIAPPLGAVML--- 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L  + +  L       +      +           +        + ++    + ++
Sbjct: 67  --IGLVGLVIFVLAGLSAGTVATWADDIPSMGNEIRRKLQGWVQTVENVRSATEQVEQIT 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +E  +        P   +           ++   ++   F    G     +L
Sbjct: 125 AENGGNGAAEEVVVKQ-----PGLLNNAMTAGARIGGTVAVALVLALFLLASGDMFYLKL 179

Query: 189 DSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
               +         K    V + +    L +TII  G G+ +G   +  G+P     G+ 
Sbjct: 180 VQSFQTFTGKKRALKAVYDVERRVSRYLLTITIINAGLGISVGLYLFALGLPVPYVWGLA 239

Query: 248 TAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++  +P    +    +     +    ++  A    +   I   +  + + P+LVG  +
Sbjct: 240 AFLLNFLPYIGGVIGAVLVGAYAIASFDSLGYAILAPIGYQILTGVEGQFITPYLVGRRL 299

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +L  +  F  +V      G+ G  +    + +  VI
Sbjct: 300 ELNTVAVFLTVVFWGWLWGIAGALVAVPFLVVFKVI 335


>gi|302750837|gb|ADL65014.1| putative permease [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|323440834|gb|EGA98542.1| hypothetical protein SAO11_0265 [Staphylococcus aureus O11]
 gi|323443877|gb|EGB01489.1| hypothetical protein SAO46_0300 [Staphylococcus aureus O46]
          Length = 338

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 13  IIGSVFLPFLISGFLFYICLPFQNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 71

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 72  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 121

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 122 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 181

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 182 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 241

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 242 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 301

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 302 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 335


>gi|146293482|ref|YP_001183906.1| hypothetical protein Sputcn32_2386 [Shewanella putrefaciens CN-32]
 gi|145565172|gb|ABP76107.1| protein of unknown function UPF0118 [Shewanella putrefaciens CN-32]
          Length = 368

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  I     P        +         +A +
Sbjct: 12  RGFAVMAFVVIILAGIKAASPIVVPFVLSSFIAMICNPAIGLMTKYRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +MC  ++  L+L       + E   ++       I    W+      +       + L+
Sbjct: 67  LLMCFIVLMGLWLASVVGSSINEFSKQLPQYRDQLIEQFSWIIHKLQALNIHISKDQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     QQ+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIVLTIVFMLFEAQSLPKKLHLALDDPDMRLQQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  GL++G      GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVLKTLVSLATGLIVGIGLTFIGVDYALLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPTAAGGTALLYIGANMVMGNVIEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|237735950|ref|ZP_04566431.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381695|gb|EEO31786.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 365

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 103/328 (31%), Gaps = 17/328 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           P++   ++ +   P+                 +       ++ +++V+ + I+ L +L  
Sbjct: 40  PIIIGGVLAYFLEPLVQMVTKLFENCQSSFLKKHRRVLSVLLVSLAVILMIILLLTWLIP 99

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             M    E    +    +          + P          +         + S   L  
Sbjct: 100 MVMDYAVEFAKNIDTYVKSFEASINSSFEDPNLAGTIIQVEQTF-------VDSIKSLSA 152

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N    +  FA + G   L   + +IF    L    +      + +               
Sbjct: 153 NDFMEVIAFAGKTGSTLLTILMGLIFCPYILIEAEKLARIFDRFMLCFISQENLNLIHGY 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISF 262
           +    ++  +   G  I ++  GL+    + L G+P    L  +  I  MIP   P I  
Sbjct: 213 AIKSHRIFGNFIYGKFIDSVIIGLIALVGFGLMGLPFFPLLAFVVFITNMIPYFGPFIGG 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V   +L+   I  A    L+           L P ++G  + +        +      
Sbjct: 273 VPVVFIVLLTNGIMPAIWTALFIFALQQFDGLILGPRILGDSVGISPFWIICSITIFGSL 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
            G LG+F+G  L+ +I + + + +   K
Sbjct: 333 FGFLGMFLGVPLICVIRMFFNDFLEYRK 360


>gi|15805286|ref|NP_293976.1| hypothetical protein DR_0252 [Deinococcus radiodurans R1]
 gi|6457925|gb|AAF09838.1|AE001886_4 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 373

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 101/332 (30%), Gaps = 11/332 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +         A +I + + P+              L V   + +    +     L     
Sbjct: 39  ITTVLVDFAVAFLIAYLANPLLGWLER--GRVRRGLGVFFVLLLFLGLLALAGALVVTVG 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +  +L   +     +   +         G     L     +            +  N +
Sbjct: 97  GQFVQLFQNLPAQIDNLNRILDGAVQWLSGRGIPGL-ADAQTRMTEALRDWIANIGNNIV 155

Query: 147 DFIPRFASRFGMIF------LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             +    S  G +F            ++ +++   +   D   ++  L       +    
Sbjct: 156 PILQNALSSTGTLFNRLISIGGVIGQVLLILLLSVYLMLDYARVNASLLRAFPRPWQPKV 215

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            + S ++   +     G  +IA   G+ +     + G+PS  A+G +     ++P   PI
Sbjct: 216 LEFSDLIGTAVGGYVRGQLLIAAFIGIFVWLGLTIVGIPSAAAIGFLAGAFNIVPYLGPI 275

Query: 261 SFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                ++ L +      F    + +   +   I    L P+++     L  +     ++ 
Sbjct: 276 IGATPALLLALTLPNAGFKMILVVVVFVLANQIEGNFLSPYILSKTTDLHPVTVLLAILV 335

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GV  MG  G  +   L+AL  ++ ++     +
Sbjct: 336 GVALMGFAGALLAVPLVALGKLMLEKYYYPSR 367


>gi|26250089|ref|NP_756129.1| hypothetical protein c4267 [Escherichia coli CFT073]
 gi|26110518|gb|AAN82703.1|AE016768_121 Hypothetical protein yhhT [Escherichia coli CFT073]
          Length = 376

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 94

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 95  VVVVMLIALTALVGVLAASFNEFISMLPRFNKELTRKLFKLQEMLPFLNLHMSPERILQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 319 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 350


>gi|268589315|ref|ZP_06123536.1| permease, PerM family [Providencia rettgeri DSM 1131]
 gi|291315338|gb|EFE55791.1| permease, PerM family [Providencia rettgeri DSM 1131]
          Length = 354

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/355 (13%), Positives = 110/355 (30%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I  + ++    V ++F     AP+L+A+ + +      +    +   S + 
Sbjct: 10  RRRFADPQAIALFTLLVSGFVIIFFFSSILAPLLAAIALAYLLEWPTNLLQ-RIGLSRSV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I       +  + +L +      +   L++ +           + L +    +    
Sbjct: 69  AVGIILTLFAGISAMVILIIAPTAWQQGINLMADLPNMVNRFNEFAQKLPEQYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +   +     +   D + + +    +      + ++ + +  FF  +D 
Sbjct: 125 ----VDVGIIDMMADNLRSRMSGIADSVVKASVASLIGIFTLAVYLVLVPLMTFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             IS+    L          K+   + + I +   G     +  G+     +    +   
Sbjct: 181 ERISKSFLKLLP-KNRLLVGKVWVEMNEQITNYLRGKVTEMVIVGVATYLCFAYFDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+  +  +IP    ++ T   +   L   G       L L   +   +    + P 
Sbjct: 240 VLLSVLVGVAVLIPYIGAVAATIPVVIVALFQFGIGSEFWYLMLVYLVIQGLDSNVVVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + L  L     +V      G  G+F    L  LI  +         E++ 
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHVWPEEPTESQN 354


>gi|254416264|ref|ZP_05030018.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196176946|gb|EDX71956.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 354

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 97/317 (30%), Gaps = 10/317 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
             + +A++I      +   F  +      F  +++   ++C+ +     +      +  +
Sbjct: 1   MLIFAAIVISNALNILVERFQ-RSGMQRFFAVLLSLFLLLCILVGFYFLIVPPFAEQFLQ 59

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L   V    +        L          +         Q L            I+ +  
Sbjct: 60  LSELVPQGIEQLSEWIEALEADISSGLLDQYIPDINQLLQQLPP---------LINRVLG 110

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
               F    L   L+ + +++       D     +    L    +     +I +   + +
Sbjct: 111 GGFTFFNNALGVLLNSLLVLVLTLMLLADPHPYRKSFIRLFPSFYRRRVDEILQRCNESL 170

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R    G+        L+      L G+P  +A   +  I+  IP   P+      I + +
Sbjct: 171 RGWLAGILFNMAVISLLSFFGLLLLGIPLALAQATLAGILTFIPNLGPVVSVIPPIAIAL 230

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             + + A  + +   +   +    L P ++   + L    T    +  V   G +GL + 
Sbjct: 231 LDSPWKAIAVLILYIVIQQVESNLLTPLVMAQQVSLLPAITLLAQLFFVTFFGFIGLLLA 290

Query: 332 PVLMALIAVIWKESIMA 348
             L  +  V  KE ++ 
Sbjct: 291 LPLTVVAQVWLKEVLVH 307


>gi|158336300|ref|YP_001517474.1| hypothetical protein AM1_3162 [Acaryochloris marina MBIC11017]
 gi|158306541|gb|ABW28158.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 386

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/309 (11%), Positives = 94/309 (30%), Gaps = 4/309 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++  + L  L+ ++       +A+++      +      +   S       A  S++
Sbjct: 7   IGLVVFLVSLYILWEIRQVLLLGFTAVVLASALNGLVRQLTKR-GLSRGLAVASAIFSIV 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +  L +    + + +EL+ +V  +      +     +            +    P 
Sbjct: 66  GVACLIGLLVIPPFVTQAQELLDRVPDSLTRIEELINEAQETGLAFGMPSAGIEI---PV 122

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I +         + +           L   L+I+ +++    F  D     +    L
Sbjct: 123 DSLIDNLREKIPAFAESVVNNFFALFSNSLLVALNILLILVLTIMFLVDPDQYRRIFIRL 182

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      I  +    + +  +G+        +  G   W+ GV   +A  +I  ++
Sbjct: 183 FPSFYRRRVDYILGLCDSALDNWIVGILFNMTVIAVFSGLGLWVLGVDLVLANALIAGLL 242

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P       + + +    + A  + +   +   +    L P ++   + L    
Sbjct: 243 EAIPNIGPTLSLIPPMAIALLDAPWKAVAVLILYILIQQLEQYLLVPAVMAKQLSLAPAV 302

Query: 312 TFFGLVGGV 320
           T    +   
Sbjct: 303 TLLSQIVFA 311


>gi|85716427|ref|ZP_01047399.1| hypothetical protein NB311A_02501 [Nitrobacter sp. Nb-311A]
 gi|85696784|gb|EAQ34670.1| hypothetical protein NB311A_02501 [Nitrobacter sp. Nb-311A]
          Length = 381

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 91/353 (25%), Gaps = 10/353 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +     L   ++       + + ++ G     +          + T   VI  +   
Sbjct: 28  IGIVAFGAALALAWYSAATLLMLFAGILFGVFLTAMADLLRRIFGGNQTLRLVIVCILFT 87

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    ++        ++  L S +     +              +              
Sbjct: 88  GLLSGVVVLGGTTIAQQVTALSSTLRAQLGNAKDFLEKQGIDTSFLNVGTRTGPIDVDTL 147

Query: 132 SLKILSETFL----------KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                S +              +G   I     +      +   +   +I          
Sbjct: 148 PTPTTSASPSRGPKLPDASTIASGTGAIVSQTIKILAHVFEGVGNFFIVIFLGLLLAAQP 207

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 +             ++   + + +R   LG         L+      L G+P  
Sbjct: 208 KIYRDGILRFVPTRRLPKATRLIDDISETLRRWLLGQMATMATLFLLTWIGLTLIGIPGA 267

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LG +T ++  IP    I   A+ +   +   +      F+      F+    L P + 
Sbjct: 268 LVLGFVTGLLTFIPNVGAILAGALIVLASLGSGLTAIISAFMLYLAVQFLEGNVLTPLIQ 327

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              I +P    F   +      G+ GL +   L+A+I V+            +
Sbjct: 328 RHAISIPPATLFAAQIFLGVLFGVWGLALALPLIAVIKVVLNHVWPDQTAPAQ 380


>gi|218438070|ref|YP_002376399.1| hypothetical protein PCC7424_1078 [Cyanothece sp. PCC 7424]
 gi|218170798|gb|ACK69531.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 336

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 111/338 (32%), Gaps = 13/338 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + + + +  L+ ++       +A+++      I    + K +    F  +I  V +
Sbjct: 6   LIGLVALILSIYILWKIRQVVLLAFTAVVLATVINRIVVFLMPKLKVKRGFSIIITFVLL 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  +  L +F   + + +EL+++V    +      + L +      +  +        
Sbjct: 66  LVVLGLFSLIVFPPFIEQFRELINQVPQGIEQLDQFRQILPEPFQQTLSDTINQLVRP-- 123

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                             +               +S + +++ +     +     Q    
Sbjct: 124 -----------IRLIESRLFGNFFALFSSTFTIIVSTLLVLVLIIMLLSNPKQYRQAFIL 172

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L    F     ++       +   F+G+        ++ G   W+ GVP  +A  ++  +
Sbjct: 173 LFPASFRPRADEVLTQCEDSLAGWFIGIIFNMTVITILSGFGLWILGVPLPLANALLAGL 232

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP   P       + + +    + A  +     +   I    L P ++   + L   
Sbjct: 233 LTFIPNVGPTLSVIPPMAIALLDAPWKALAVLGLYILIQQIESNILTPIVMQKQVSLLPA 292

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            T    V      G LGLF+   L  +  V+ KE ++ 
Sbjct: 293 VTLIAQVAFATFFGFLGLFLALPLTIIAQVLLKELLIR 330


>gi|260886083|ref|ZP_05736457.2| putative membrane protein [Prevotella tannerae ATCC 51259]
 gi|260850602|gb|EEX70471.1| putative membrane protein [Prevotella tannerae ATCC 51259]
          Length = 378

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 113/358 (31%), Gaps = 13/358 (3%)

Query: 1   MRETMLNPQGIMRWMI---MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M++ +   + I   ++   + +    + +L     P   A  + +  +PI      K + 
Sbjct: 2   MKKEITFDRFIRGALVVGGLILAGYIISYLSTVLLPFFVACAVAYLLFPIVRFLQYKCKL 61

Query: 58  S-STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                   +A   ++         +    + E   +    +   +   P  +     P  
Sbjct: 62  KNRILSIFVALALLLGTLTALAYIIVPPFLDEFSHIKEVAINFLKD--PKMQEKVIPPHV 119

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +   +         Q L            +            + L+   + +  ++ LFF
Sbjct: 120 LHFIQERISAARIEQLLSSKDVQEAAQKILPKAWDVIWSTAGVILNIL-ASLIGLLYLFF 178

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +D    +    +   H      +++   + + +   F G  ++A+   ++    +W+ 
Sbjct: 179 LLKDYERYAYGWINFVPHSRREIARQLVGDIKQGMDGYFRGQALVALSNCIMFSVGFWII 238

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI------KGNIFNATCLFLWGAIELF 290
             P  V LG    +++ +P    + F       L+      +        + L   +   
Sbjct: 239 DFPIPVGLGCFIGLISFVPYLQVVGFIPALFLALLRAADTGQSFWLLFGGVCLVYIVVQV 298

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + D  + P ++G  + L        L      +G++GL I   +  L+   ++  ++ 
Sbjct: 299 LQDTIVTPHVMGKIMGLSPAVILLSLSVWGYILGIVGLIIALPVTTLMISYYRRYVIG 356


>gi|188586396|ref|YP_001917941.1| protein of unknown function UPF0118 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351083|gb|ACB85353.1| protein of unknown function UPF0118 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 368

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/357 (16%), Positives = 121/357 (33%), Gaps = 11/357 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY--------FLKGFFAPVLSALIIGFTSWPIYSSFI 52
           M++  L    ++  +I+F +L  L          +  F  P L A ++ +   P      
Sbjct: 9   MKKIGLATTSVLIVIIIFAVLYWLLSTAVILRSQIINFLLPFLFAFVVAYILKPAVDYME 68

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
              +       +I    +    +      F   + E+++L+S      +        L  
Sbjct: 69  EN-KIPRILAILILYAIIGSFLVFVGGRAFATIVNEVQKLISIAPQYARDIQFFLMDLEL 127

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                    + T+ +    +      T      +D        F +    + LS++   I
Sbjct: 128 WIERHDLPIMVTETIRENIAEAETELTEYLDRIVD--VESLLAFALNIFGHFLSLVAFPI 185

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            LF+F +D   I + L  L    F   +    R + + I +      II    GL+    
Sbjct: 186 ILFYFLKDTDLIKKNLSFLIPGRFRKRFLFAFRDINRTIGAYIRSQIIICGFIGLLTYLG 245

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             + GV   + LG+   I  +IP   P      S  + +      A  + +   I   I 
Sbjct: 246 LMILGVDFALVLGIFAGITNIIPYFGPFIGAIPSTVVALLQTPTLAIKVIILITIIQQIE 305

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            + + P + G  + +  L     L+ G +  G+LG+ +   ++A+  V+ +      
Sbjct: 306 SQIVAPQVFGKNLAIHPLAVITVLIAGGQFFGILGMILAVPVLAITRVVVRHLAFDF 362


>gi|50842045|ref|YP_055272.1| membrane spanning protein [Propionibacterium acnes KPA171202]
 gi|289425855|ref|ZP_06427609.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289426791|ref|ZP_06428519.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|295130127|ref|YP_003580790.1| hypothetical protein HMPREF0675_3618 [Propionibacterium acnes
           SK137]
 gi|50839647|gb|AAT82314.1| membrane spanning protein [Propionibacterium acnes KPA171202]
 gi|289153798|gb|EFD02505.1| conserved hypothetical protein [Propionibacterium acnes SK187]
 gi|289160117|gb|EFD08293.1| conserved hypothetical protein [Propionibacterium acnes J165]
 gi|291375147|gb|ADD99001.1| conserved hypothetical protein [Propionibacterium acnes SK137]
          Length = 408

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 118/353 (33%), Gaps = 18/353 (5%)

Query: 12  MRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++   +  LY +         PV  AL++    WP+ +             + I  
Sbjct: 62  WRMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICL 120

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ L       +     L+ ++L  + V + +  +               + L  K  
Sbjct: 121 LLLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA- 179

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                                I   A+  G     +   ++  + A FFF  +G  ++++
Sbjct: 180 -----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEK 228

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L      A     ++     + +      I+A  +GL  G    + G    VA+G +
Sbjct: 229 SAVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGAL 288

Query: 248 TAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + 
Sbjct: 289 TFILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVS 348

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +  L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 349 IHPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 401


>gi|281415381|ref|ZP_06247123.1| predicted permease [Micrococcus luteus NCTC 2665]
          Length = 438

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 120/345 (34%), Gaps = 20/345 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           R   + P+ ++  + +  +++ + F +      APV   L +   ++P+ +  I +    
Sbjct: 26  RPHRMWPRMLVIVLTLAGLVLVVQFFQGIASIAAPVFLGLNLVIVAYPLQAWLIRR-GLH 84

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A    + ++ +  V    + + G+  + EL        Q  + V  WLS+      
Sbjct: 85  PVLGATTTVLLIVAVMGVFGGMMVWSGLELVAELPKYTDRFQQIVLDVSHWLSERGVTPD 144

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                        S+ + + T    + +  I         + +   + + F+ +      
Sbjct: 145 ------MVSQQLASIDMSAVTGTAVSAVTKIATNVYAVFGLLVTVIMGMFFLAMDSMDVE 198

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           R    +S              +        + +R  ++  T+  +   ++   A  L GV
Sbjct: 199 RRVRLLST---------ARHEFGHALVEFAQGVRRYWVVTTVFGLIVAVLDVIALMLIGV 249

Query: 239 PSHVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  +  GV++ +   +P  A I      ++  L  G   +   + +  ++  F++   ++
Sbjct: 250 PLALVWGVLSFLTNYVPNVAFIIGLLPPAVLGLAAGGWSDFLWVVVSYSVLNFVLQSVIQ 309

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P + G  I +    +F  L+     +G LG  +      L   + 
Sbjct: 310 PKVAGDAIGVIPTVSFLSLLFWAWVLGPLGAILALPCTLLAKAVL 354


>gi|224541834|ref|ZP_03682373.1| hypothetical protein CATMIT_01006 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525257|gb|EEF94362.1| hypothetical protein CATMIT_01006 [Catenibacterium mitsuokai DSM
           15897]
          Length = 391

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 116/349 (33%), Gaps = 24/349 (6%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSS----------FISKKEESSTFLAVIATVSVMCLFI 75
           FL   F P+L   +I +   P+             F  KK+ S      I ++ V+ +F 
Sbjct: 47  FLTQVFTPLLIGFVIAYLLKPLVEKVESSLRSISYFQEKKKLSHQLSVAITSLIVLFVFA 106

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +   F+      E+                +  +L  I   + A            S+  
Sbjct: 107 LLSAFVIRSIGKELA---------VTQFKDMSDFLRIIAKNVNAFYEDLIVQLKSMSIST 157

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ----LDSL 191
           +          + +            D+  +++F II   +F  DG  +       + + 
Sbjct: 158 VQLQQFLKTFANGLTTNILGAISRVSDFFTNLLFSIIFAIYFMLDGEKLWNYWSKSIKAF 217

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++   +  V      G  I A    L++  A+    +   + + ++  I 
Sbjct: 218 TSRQVDVVIHQLLVDIEGVFSGYVRGQVIDAFLMFLMVSIAFGFLHIKFWIVIALLVGIG 277

Query: 252 AMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            ++P   P      ++I  L+ G++  A   F+   I   +    + P L+   I +  +
Sbjct: 278 NLVPYVGPFLGYGSIAIIGLVTGDLHMALKAFIALLIIQGVDGNIINPRLLSASIDIHPV 337

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                L+ G    G LG+ +   + AL  + ++  +    ++K ++   
Sbjct: 338 LVIVSLIIGSMIGGFLGMLVSVPVGALCKIWFERLVDYRTQSKNELVEE 386


>gi|255280313|ref|ZP_05344868.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
 gi|255269404|gb|EET62609.1| sporulation integral membrane protein YtvI [Bryantella
           formatexigens DSM 14469]
          Length = 348

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 117/348 (33%), Gaps = 4/348 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M         I    I   + + + ++     P   A ++     P       K      
Sbjct: 1   MSMHKPYKDAIKLTGIAIAVFLGMKYILPVAIPFFIAWVLVRFLMPGAVFLEEKLHLKKV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  V +     + L  L    + ++  L +   +  Q    + +            
Sbjct: 61  LAGGILLVLLTGAAGIALYLLGSTLIRQVCNLAANFDIYMQKAENLLKVCCSAVEKNTGI 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      ++ +  E  L+T  +  + + +  + M  L++   ++ + ++     +D
Sbjct: 121 HAQAVENFIYDNMLV-VEQRLQTYAVPDVLKNSISYLMSMLEWLGVVLIVFVSYMLILKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + L   G +      +KI+  +  +  +      +I +   ++  +   L G P 
Sbjct: 180 YEKLGEVLKKYGIY---ERTRKINAAMMSLGGAWLRAQLLIILTVTIICVAGLALLGYPY 236

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG++  ++  +P     +       + +    F      +   + +  + + L P L
Sbjct: 237 ALLLGIVIGLLDALPFIGTGTILVPWGVIQMFTGKFWLGVCLIVLFLIINTLREFLEPKL 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +G  + +  +     +  G+   G+ G+ +GP+ + LI  I++E    
Sbjct: 297 IGDRMGIYPIAMVAAVYVGICVYGVAGVVLGPISLMLIIEIFREMREE 344


>gi|37522328|ref|NP_925705.1| hypothetical protein glr2759 [Gloeobacter violaceus PCC 7421]
 gi|35213328|dbj|BAC90700.1| glr2759 [Gloeobacter violaceus PCC 7421]
          Length = 368

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/349 (21%), Positives = 150/349 (42%), Gaps = 3/349 (0%)

Query: 5   MLNPQGIMRWMIMFIILVSLY-FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M+  Q     ++  ++    Y  L  F   +  A I+   SWP+Y       ++ S + A
Sbjct: 1   MVTRQQWAMLVVAGVLAWVAYLVLGPFLPAIAWAAILALVSWPLYQKVYEILDKRSIYAA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP--RWLSDIPGGMWASE 121
           +  T+ V    I+P++ +      +  EL   V       +      + +          
Sbjct: 61  LAMTLLVSLSVILPVVLIAASLASDAVELYRTVQADGSMSLAALKESYAALGRTVARVPV 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +  +  +  + + ++       +G   I  + + FG       +++   I  LFF Y  G
Sbjct: 121 VGGQLQNWLREVDLVQVQQWLRSGAGRILTWLAGFGQAISGALVTLGLTIFTLFFLYLSG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +Q     E L       +   +   +R+  LG+ +    +GL+ G   W+AG+   
Sbjct: 181 LDLVRQTREALEKLGGEPLVSLLDPLGATVRAVVLGLVLTGAAQGLLAGLGLWVAGIEIA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LGV+ A+++++    P+ +    I+L   G  + A  LFLWGA+ +  +D  L+P  +
Sbjct: 241 LILGVLAALLSILQIPTPVVWFPCVIWLAANGQTWQAVALFLWGALVVGTIDNFLKPLFI 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                +P L  FFG++GG+   G +G+ +GPV +AL+ V+W+      +
Sbjct: 301 SQGTGIPILLVFFGVLGGLLAFGTIGIVVGPVSLALLLVLWRRWTAPPE 349


>gi|218439950|ref|YP_002378279.1| hypothetical protein PCC7424_3009 [Cyanothece sp. PCC 7424]
 gi|218172678|gb|ACK71411.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 382

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 105/343 (30%), Gaps = 9/343 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N    + ++I  I L  L+ ++     +  A++       +        +   ++   +
Sbjct: 1   MNFNRWLGFVIFVISLYILWQIQQLLLLIFMAIVFATAFNRLIRWLE-YHQIKRSYAITL 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + +  +  L +    + + ++L+  +             L D    +        
Sbjct: 60  TLGGSLIIITLFFLLIVPPFIEQFQKLLELLPQIWVQIRRGLIALRDANLDL-------- 111

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
               P +L  L +            +             L ++F+I+       +     
Sbjct: 112 FPQPPTTLAELIKQLQPVFEDTSFWKRFFAIFSNSFAAILQLLFIIVLTLMMLIEPRPYR 171

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q    L    +     +I       + S F G+ I +   G++ G    +  V   +   
Sbjct: 172 QGFLRLFPSFYRRRADEIFEKTEIALGSWFTGIVISSTFIGILSGVGLLIFQVNLALFHA 231

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++  IP   P       I + +    +    + +   I   I    L P ++   +
Sbjct: 232 LMAGLLNFIPNIGPTLSVIFPIMIALLDAPWKIGAVLILYFIIQNIESYWLTPTVMAKQV 291

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L    T    +   +  G+LGLF+   L  +     +E +  
Sbjct: 292 SLLPAVTLMAQLFFAKVFGILGLFLALPLTVVAKTWIEEVLFK 334


>gi|67458793|ref|YP_246417.1| permease PerM-like protein [Rickettsia felis URRWXCal2]
 gi|67004326|gb|AAY61252.1| Permease PerM homolog [Rickettsia felis URRWXCal2]
          Length = 351

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 120/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +     +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYKNYLQAEI-----LPPIMAKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      +          +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSDFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKTLEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   +        L P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLIIGYLNFGVTSKLLYIMIIYLVGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|34763767|ref|ZP_00144684.1| Permease [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
 gi|27886461|gb|EAA23719.1| Permease [Fusobacterium nucleatum subsp. vincentii ATCC 49256]
          Length = 344

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 115/323 (35%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++   V+ +F +  L +    + 
Sbjct: 19  KDYFMTIIMSIFIAILLEPIVKYLKRKSKINDILAISLSIAFVVLIFTILSLIVIPEIIS 78

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L +     ++    + + L +         +    ++   +  I +        + 
Sbjct: 79  SLKVLNNIYPYISEKATTMGKNLVNYLAEKNIYTVNMDEVNSYFTNFIANNVTNIRKIVS 138

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      + + F +  L+ +   + L        ++   +  +       Y     ++ 
Sbjct: 139 ALFGSLVDWTIGFTNLFLAFVLAFLILLDKKHLTKTLENIIIIIFGVKNTPYIMNKLKLS 198

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            ++  +   G  I++   GL +     + G P      V+  +  MIP    I+   ++ 
Sbjct: 199 KEIFLNYVSGKLIVSAIVGLCVYIVLLVTGTPYAALSAVLLGVGNMIPYVGSINGGIIAF 258

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L++         L +   I   +    + P ++G  + L        ++      G++G
Sbjct: 259 SLILVVAPIKTIVLLIAITISQLVDGFIVGPKIIGNKVGLNTFWVMVSMIIFGNLFGIVG 318

Query: 328 LFIGPVLMALIAVIWKESIMAIK 350
           +F+G  ++++I + + + + A +
Sbjct: 319 MFLGTPILSIIKLFYVDLLKAKQ 341


>gi|193782592|ref|NP_435597.2| hypothetical protein SMa0665 [Sinorhizobium meliloti 1021]
 gi|193073048|gb|AAK65009.2| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 384

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 124/342 (36%), Gaps = 5/342 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     ++      S   +  F   ++ A I+    +P Y++  +   +     A++
Sbjct: 25  RITEIARIGLVGLFAYWSFTLIAPFAIILIWAAILAVALYPAYAALSAILGQRPRVAALV 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + + + PL  + +     ++ +++++   +      P  +   P           
Sbjct: 85  ITMLGLLVIVAPLAAIAFSFAEGLQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWS 144

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +                  +  G   L + +S++       F +  G  ++
Sbjct: 145 MASDNLEAVLQQIKPALLQAGSKALGKIASIGADLLSFVVSVLVAG----FLFGSGARLA 200

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                    +         ++    IR+   G+  +A+ +  +      L  VP+  A+ 
Sbjct: 201 NSAQGFASRMGGDRGVGFLQLAAATIRNVARGVIGVALLQAFLCILILSLFKVPAPGAIA 260

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +  I+ +I  G  ++   V ++         A  LF    I L I+D  ++P LV   +
Sbjct: 261 FVVLILCIIQIGPALALLPVIVWAWTSMEFGMA-ALFTILLIPLLIIDNVMKPILVARGL 319

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             P L    G++GG  + GL+GLF+GP+++++   +    + 
Sbjct: 320 STPTLVILLGVLGGTLSYGLIGLFLGPIVLSVFHSLLLIWMN 361


>gi|289641569|ref|ZP_06473731.1| protein of unknown function UPF0118 [Frankia symbiont of Datisca
           glomerata]
 gi|289508664|gb|EFD29601.1| protein of unknown function UPF0118 [Frankia symbiont of Datisca
           glomerata]
          Length = 421

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 93/321 (28%), Gaps = 18/321 (5%)

Query: 12  MRWMIMFIILVSL----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +++ + +         ++    PV++ L++    +P       +        + +  
Sbjct: 91  WRLLVIGVAIYIFMIVIGRVRVVVIPVIAGLLVSALIYPTAMRL-RRHGVPKLVSSFVTV 149

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + L     + + +    E   L  +V    +      R            +      
Sbjct: 150 FGFLILVAGAGVGVGFNAANEFPSLSDQVSQGVEQVRDYLR------------DGPLHLS 197

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      T    N    +         +  +    I+  + A FFF  DG  I   
Sbjct: 198 QSQLDDLTNDITRTLANNRGRLVSGVLSGATVAAEVLTGILLTLFATFFFVHDGDRIWDW 257

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +          +   +     +     G   +A+ + + +     + GVP    L ++
Sbjct: 258 IVTRFPPGTEERVRGAGKEAWATVTGYIRGTMFVALVDAIGITIGLLVVGVPLVAPLALL 317

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T +   IP          +I + L+   +  A  +         I    L+P ++   ++
Sbjct: 318 TFLGGFIPIVGATVAGVAAILVTLVSNGLVPALVILGVVLAVQQIEGHLLQPLVMRRAVR 377

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           L  L     L  G    G+ G
Sbjct: 378 LHPLAIVVSLSAGGVLAGIPG 398


>gi|149375123|ref|ZP_01892895.1| predicted permease [Marinobacter algicola DG893]
 gi|149360487|gb|EDM48939.1| predicted permease [Marinobacter algicola DG893]
          Length = 359

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/359 (12%), Positives = 116/359 (32%), Gaps = 12/359 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + + ++ ++++   ++ + F     AP ++A+I+ F    + +   ++        
Sbjct: 11  KYFSDEEAVILFLLILAGVIFIIFFGSMLAPAIAAVIVAFILQGLVTKL-NRLGIPEIVS 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +      + L I  L  L      ++  L  +     +        L +    + + E 
Sbjct: 70  IIGVFFVFLGLLIGVLFGLLPLIWTQVTGLAGEAPRIFREMQSYLEVLPEQYPTLISMEG 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +   +       +L +  ++ IP              + ++ + I +FFF +D  
Sbjct: 130 INTIYNQVTTEAGRMTQWLVSFSLESIPDLV--------ALLIYMVLLPILVFFFLKDRR 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +  +          +I   V     +   G  +  +  G +   A+ + G+P   
Sbjct: 182 VLLGAIARMLP-SQRPMMVRIWHEVNLQCANYVRGKAVEILIVGGITYVAFKVLGMPYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  +IP       T     I L   G       + +   +   +    L P L
Sbjct: 241 LLSLMVGLSVVIPYIGAAVVTIPVAMIALFAFGWGSEFIWVMVVYGVIQALDGNVLVPIL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                 L  +     ++      GL G+F    L  ++  I+    +   + +     +
Sbjct: 301 FSEVNNLHPVAIIVAVLFFGGIWGLWGVFFAIPLATMLKAIFSAWPVKNGQAEALPKES 359


>gi|218129150|ref|ZP_03457954.1| hypothetical protein BACEGG_00725 [Bacteroides eggerthii DSM 20697]
 gi|217988669|gb|EEC54988.1| hypothetical protein BACEGG_00725 [Bacteroides eggerthii DSM 20697]
          Length = 376

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 118/349 (33%), Gaps = 11/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++  +I+  +L+ L  L     P   A +I +  +P+ + F  K +  +  +++   +
Sbjct: 13  RGVILGVIIIGLLMLLKRLSSVLLPFFIAWLIAYLVYPLVTLFQYKLKFKNRIVSIFCAL 72

Query: 69  SVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + +        L    + E   + + ++    HG       + +   +  +       
Sbjct: 73  FTILIIGAGAFYLLVPPMIQEFGRVQALLIQYFSHGTYNSNVPTSLSEFLRDNIDAKFIT 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L         +  +   +           L    +++ + F   D  SI++ 
Sbjct: 133 ELFNKENLLDALKEAVPRLWSLLSDSIDLLFSVFTIFL----ILLYVIFILLDYESIAEG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +  +   I   +   +   F G   +A+  G++    + +   P  + LG+ 
Sbjct: 189 WTHLVPIKYRPFTISILNDIKTGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLF 248

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW------GAIELFIVDKTLRPFLV 301
              + M+P    I F    +  ++K +        +         I   I D  + P ++
Sbjct: 249 IGALNMVPYLQVIGFVPTIVLAILKASDTGGNFWIIIASAIAVFIIVQAIQDGFIVPRVM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G    L        L      MG+LG+ I   L  L+   ++  I+  +
Sbjct: 309 GKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKE 357


>gi|206601945|gb|EDZ38427.1| Conserved hypothetical protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 361

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 133/341 (39%), Gaps = 1/341 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   + + +  +    +  + + +L A I+ F   PI++  + K      + A++ T+  
Sbjct: 21  IAMALFLCLFGLLYLIIAPYLSALLWAAILSFAVTPIHAFLLKKIG-RPAWTALLTTLLF 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   + PLL L      E+   V+ +    +               + +           
Sbjct: 80  LGFVLAPLLSLGVPLSHELILAVNGIRTFLEDPHSKVPDWIARLPLVGSRIDTLLTGLKT 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             + +   T      I                + L     ++A F F   G +I   L  
Sbjct: 140 HPIGLDVATAKLQTHILAFGDQVLSLATNLGKWFLKFFIFLLAFFAFTLHGETIWATLSR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L      +  +   +++P   R    G+   A+ + ++    +W AG+P+ + L  I  +
Sbjct: 200 LFTQWAGSRMEIPLKVIPATTRGVLYGVFFTALFQAILSAIGFWGAGLPNVLLLTTIAFL 259

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            A+ P GA + +    +YL +  +   A    LW  +   I++  ++P  +G    +PFL
Sbjct: 260 AALFPIGAVVVWVPSLLYLTVMHHWIAALIFGLWNLLGGGIIEHFIKPMFIGRSSDIPFL 319

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               G++GG+   GL+GLFIGPV++++   + K    +  E
Sbjct: 320 AILLGVMGGLEAFGLIGLFIGPVVLSVTLALLKALASSPSE 360


>gi|70726947|ref|YP_253861.1| hypothetical protein SH1946 [Staphylococcus haemolyticus JCSC1435]
 gi|68447671|dbj|BAE05255.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 361

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 108/341 (31%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    +  +   F P + +  + +   P  S                  + ++ +  + +
Sbjct: 29  VFAPIVTIIGSVFLPFMISGFLFYICLPFQSILEKW-GFPRWASITTIFIGLIAIIAIVV 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+       +    +  +          S      L    + +I S 
Sbjct: 88  AFIAPIIISNVNSLIKATPSLQKEAEHIVNF----------SLTQMDKLPSDVTDRINSA 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                + +  I   +  +   F+     +I +   L +  +D       L    +     
Sbjct: 138 VKSIGDSMTGILANSFTYLTSFISTVFLLIMVPFFLIYMLKDHEKFIPALAKFFKGERKV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   +++  G++L   Y + G+P    L +   +  +IP   
Sbjct: 198 FVVDLMKDLNFTLKSYIQGQVTVSVILGVILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  L I  +      + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 258 PWLSFAPAAVLGIIDSPTTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILA 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + I   L A++  I        +   +K +S+
Sbjct: 318 AGDLGGFTLILIAVPLYAVLKTIASNVFKYRQRIIDKANSD 358


>gi|120598439|ref|YP_963013.1| hypothetical protein Sputw3181_1622 [Shewanella sp. W3-18-1]
 gi|120558532|gb|ABM24459.1| protein of unknown function UPF0118 [Shewanella sp. W3-18-1]
 gi|319426786|gb|ADV54860.1| autoinducer-2 transport protein, TqsA [Shewanella putrefaciens 200]
          Length = 368

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  I     P        +         +A +
Sbjct: 12  RGFAVMAFVVIILAGIKAASPIVVPFVLSSFIAMICNPAIGLMTKYRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +MC  ++  L+L       + E   ++       I    W+      +       + L+
Sbjct: 67  LLMCFIVLMGLWLASVVGSSINEFSKQLPQYRDQLIEQFSWIIHKLQALNIHISKDQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     QQ+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIVLTIVFMLFEAQSLPKKLHLALDDPDMRLQQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  GL++G      GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVLKTLVSLATGLIVGIGLTFIGVDYALLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPTAAGGTALLYIGANMVMGNVIEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|331083327|ref|ZP_08332440.1| hypothetical protein HMPREF0992_01364 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404408|gb|EGG83953.1| hypothetical protein HMPREF0992_01364 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 379

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 114/347 (32%), Gaps = 16/347 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE---------ESSTFLAVIATVSV 70
           +     F+     P L    + F      S    +                  V+A + V
Sbjct: 31  VAAGFSFVVSIVFPFLLGAAMAFILNVPMSFMEKRLFSKTKGKAKKLKRPICLVLAILFV 90

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +  + LL +       +  L   +  A    I + RW  DI       E+W   L   
Sbjct: 91  VAILWIVLLVVIPEVASTVASLSVNIEAA---LIKLQRWAMDIFEDNKQIEVWIASLQFD 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I +      NG   +           ++  ++     +   +       ++ Q+  
Sbjct: 148 WDGIIHTAFGFLKNGAGNVLNSTMTVAKTVINSVMNFCVAFVFACYILLQKEKLAVQIQK 207

Query: 191 LGEHLFPAYW----KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +    F          I+ +  K   +   G    A+  G +   +  +   P  + +GV
Sbjct: 208 ILYAFFSKKVVTKVLDIASLSYKTFANFVTGQCCEAVILGTMFFISMSILRFPYALLVGV 267

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + A  A+IP         +  +L++  +   A    +   +   +    + P +VGG + 
Sbjct: 268 LIAFTALIPIFGAFIGCFLGTFLILVADPMKAIAFVILFLVLQQVEGNLIYPHVVGGSVG 327

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           LP +     +  G   MG++G+ +   + +++  +++E +    + +
Sbjct: 328 LPSIWVLVAVTVGGSLMGIVGMLVFIPICSVLYALFREMVYKRLKER 374


>gi|57864913|gb|AAW57087.1| conserved hypothetical protein [cyanobacterium endosymbiont of
           Rhopalodia gibba]
          Length = 363

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 121/353 (34%), Gaps = 6/353 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++P  ++  +    +L  L+ L+     ++ A++I  T  P+  S+  +         +I
Sbjct: 9   ISPSSLLMLVGSGFLLTILWQLRNLLVILMIAVVIASTLAPLVRSWEKR-GIPPWLAVII 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ L     L L    + +++ L+ K+           +  + I G      L   
Sbjct: 68  VYLGLLTLITGISLILGPTIIAQIQRLLQKLPGYLDILGTEFQNWATIRGFTQPEVLEFI 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +        +          +  +            +  L     ++   +       + 
Sbjct: 128 NQLLDLQSLVSWTLSYSQKFLIGVGGVTRGILGGVFNVIL----AVLLSGYMLSGSKKLI 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVAL 244
             + +L  H +    +     + + +     G  +I+   G  +       G+    + L
Sbjct: 184 GGIVNLFPHPWDKRLEAQVVPISQRMGGYIQGRLLISFILGSAISLGLRFLGISEFALGL 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G I  I  +IP   P+  +  ++ + I    +    + L       +    L P LVG  
Sbjct: 244 GTIAGITNLIPFFGPVLGSIPALIVAIAQGGWVYLWVLLLFLFIQNLETYVLDPLLVGSS 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           + +  L     ++ GV+ +G+LG  I P  +A   V+ +   +  K   ++ +
Sbjct: 304 VNVSPLYQLLAVLSGVQILGILGALIVPPWVAGAGVLLQNLYLIPKLQAQEQA 356


>gi|126699822|ref|YP_001088719.1| hypothetical protein CD2205 [Clostridium difficile 630]
 gi|254975804|ref|ZP_05272276.1| hypothetical protein CdifQC_10854 [Clostridium difficile QCD-66c26]
 gi|255093191|ref|ZP_05322669.1| hypothetical protein CdifC_11124 [Clostridium difficile CIP 107932]
 gi|255101344|ref|ZP_05330321.1| hypothetical protein CdifQCD-6_11094 [Clostridium difficile
           QCD-63q42]
 gi|255307220|ref|ZP_05351391.1| hypothetical protein CdifA_11567 [Clostridium difficile ATCC 43255]
 gi|255314933|ref|ZP_05356516.1| hypothetical protein CdifQCD-7_11312 [Clostridium difficile
           QCD-76w55]
 gi|255517607|ref|ZP_05385283.1| hypothetical protein CdifQCD-_10896 [Clostridium difficile
           QCD-97b34]
 gi|255650718|ref|ZP_05397620.1| hypothetical protein CdifQCD_11076 [Clostridium difficile
           QCD-37x79]
 gi|260683805|ref|YP_003215090.1| hypothetical protein CD196_2069 [Clostridium difficile CD196]
 gi|260687465|ref|YP_003218599.1| hypothetical protein CDR20291_2112 [Clostridium difficile R20291]
 gi|115251259|emb|CAJ69090.1| putative membrane protein [Clostridium difficile]
 gi|260209968|emb|CBA63968.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213482|emb|CBE05179.1| putative membrane protein [Clostridium difficile R20291]
          Length = 388

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 105/335 (31%), Gaps = 15/335 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIATVSVMCLFIVPL 78
             P +    I +    I   +  +                     ++   +   +  + +
Sbjct: 47  LQPFIIGFAIAYLLNFILKFYEDRIFIKSEKLKKLKQSSKRGLGLLLTYATATLILYLFM 106

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L + + +   +   +   L      +   E +        +  +   
Sbjct: 107 HFVLPQVIESIVGLANDIPMYVNNATKLIDKLMT---DLNLDEQYFNLAVDKWNEFVTYI 163

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T+ I  +            +  L +I  +  L    +      +   ++      A
Sbjct: 164 IKFVTDLIPILGSMLKNVASSIWNIVLGLIVSVYLLIDKEKFYGLSKKITYAVFTEKQAA 223

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +++            G  + +   G++      L  +P  + + VI  I  +IP   
Sbjct: 224 RILELTHRSNYTFGRFLGGKILDSFIIGILTFVILTLVKMPYTLLISVIIGITNIIPFFG 283

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+     S  +++  +   A  L L   I   I    + P ++G  I +      F L+ 
Sbjct: 284 PLFGAIPSTLIVMFVSPIKAFWLLLIILIIQQIDGNIIGPKILGDSIGISAFWILFSLLV 343

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + +G +G+ IG  + A+I  I K+ + +  + K
Sbjct: 344 AGKLLGFIGMVIGVPMFAVIYSIIKDIVESKLDKK 378


>gi|329929680|ref|ZP_08283372.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
 gi|328935943|gb|EGG32400.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
          Length = 372

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/354 (12%), Positives = 112/354 (31%), Gaps = 10/354 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G+     +F+I   +Y L     P L A II +   P  +               ++ +
Sbjct: 11  RGVWVLSSIFMIAYLIYVLLPLLYPFLLAWIIAYAMNPCVNLLQRSLRMPRWIAVTLSLL 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVV----------LANQHGIPVPRWLSDIPGGMW 118
                 ++ L       + E+  L                A          +++I     
Sbjct: 71  LYFGAALLILTAAVSRLVKELIALSQSFNLHIDAWMEWLTAWTQNESFQNIVNEISRFYQ 130

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +  +   ++   +    +     T+ +  I     +      +     I ++++ FF  
Sbjct: 131 NNPNYHDTINQNITRTTQTIGTAVTDLVTGIFNGILQIIYYLPNLGTIFIVVLLSTFFLS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                 ++ L  L   +       I   + K +        I+     +++    +  GV
Sbjct: 191 NSWERHNRALLRLLPGVIRKPMNYIFSDLKKALFGFARAQLILISITAVIVTITLYALGV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            S  ++G++  ++ ++P                  +              + +V + + P
Sbjct: 251 DSAFSIGLLIGLVDLLPYLGVGIVLIPWSLYAFMSDDLTLGIGLTVLYSIILVVRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            ++   + L  L    G+  G++  G+LGL IGPV + ++    +  +     N
Sbjct: 311 KVLASSVGLDPLAALLGMFVGLKLFGILGLIIGPVSLVILDAFHRAHVFKDLRN 364


>gi|160871644|ref|ZP_02061776.1| membrane protein, PerM family [Rickettsiella grylli]
 gi|159120443|gb|EDP45781.1| membrane protein, PerM family [Rickettsiella grylli]
          Length = 358

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 121/345 (35%), Gaps = 12/345 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +   + +P+  + W+ +  I++    L    APV  +++I +       S   K      
Sbjct: 9   LNRYIFDPELAILWLFLLFIIIVFASLGKILAPVFVSIVIAYLLQWPIHSLE-KLHLPRI 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +   +S + L I+ ++ L      ++  L++++      G  +  +L     G  + 
Sbjct: 68  AAVLGVYISFVSLVIIGIVGLLPLLFRQLNNLIAELPAMVAKGQALLLYLPTRYPGYTSV 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + +   +S    S   L +  + +IP          + + +  + + + ++FF  D
Sbjct: 128 NQIQEWILQFKSQLTHSGQLLLSASLGYIPNV--------IAFAIYFVLVPLLVYFFLLD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   L             ++   V     +   G  +  +   ++   ++ + G+  
Sbjct: 180 EKKIIGWLSRYLPEK-RRLISQVWTEVLTQTGNYVRGKALEMLIVWIITYLSFAILGLQY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + L V+  +  +IP    +  T   + +  L  G   +   L     + + +    L P
Sbjct: 239 AILLSVLVGVSVIIPYIGAVMVTIPVLIIGFLEWGWTAHFAYLVAIYTLIITLDANVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L    + L  +     ++     +G  G+F    L +++  I  
Sbjct: 299 LLFSEAVNLHPVTIIIAVLVFGGLLGFWGVFFAIPLASVVNAILN 343


>gi|300728368|ref|ZP_07061730.1| membrane protein [Prevotella bryantii B14]
 gi|299774287|gb|EFI70917.1| membrane protein [Prevotella bryantii B14]
          Length = 328

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 110/330 (33%), Gaps = 11/330 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P   A +  +  +PI              LA+I T+ ++ + I  L +     ML+   
Sbjct: 1   LPFFIAWLFAYLLYPIVKFIQYNMHVKVRALAIILTLILVVVVIGALYYAIIPPMLDQFA 60

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
               V+            L+ +    + +                +         + + +
Sbjct: 61  RFEDVLNRWLGQTTHSNSLTTLIKNWFVNNQVEIEHFLKSKDFNDAVKTTMPKVFNVLGQ 120

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            AS          ++ +  ++ +FF   D   ++Q    +       +W+++++ V   +
Sbjct: 121 TASIVIS-----IIASMITLLYMFFILLDYEYLTQNWIKIFPKKNRPFWQELAQDVEHAL 175

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL- 270
            +   G  ++A+  G++    + + G P  + LG++  I+ ++P     +    +   + 
Sbjct: 176 NNYIRGQGLVALIMGIMFCIGFTIIGFPMGIGLGILIGILDLVPYLHTFALIPTAFLAML 235

Query: 271 -----IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
                 +          L   I   I D  + P ++G  + L        L      +G 
Sbjct: 236 KAADTGENFWIVFGSAVLVFIIVQIITDFIVTPKVMGKAMGLNPAVLLLSLSVWGAVLGF 295

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +GL I   L  LI   W+  +    E   +
Sbjct: 296 IGLIIALPLTTLIMAYWQRYVTREHEETPQ 325


>gi|239828018|ref|YP_002950642.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
 gi|239808311|gb|ACS25376.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
          Length = 372

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 110/343 (32%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++    ++LY++     P + A  I F   P+     +K +       ++  +
Sbjct: 11  RFLLVIAVVVFGSMALYYVSTVTYPFIIAFFIAFLINPLVDFLETKTKMPRWLAVIVTLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +    +  L    +   + L + V    Q  I     L         ++L     +
Sbjct: 71  VLFAIVAGLVTLLIAEIVSGTQYLANVVPENFQKLITYMETLVAQQIIPLYNDLAVLFKN 130

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              S +      ++  G             + +          +     IF ++A FF  
Sbjct: 131 LDASQQDTIINNIQAVGTQIATTVGQFIQHVLQNIPLLLAWLPNAATVFIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D + ++     +         K +   + K +         +     +++     +  V
Sbjct: 191 KDWYRLTGIAQKILPAKARKSGKTVFLDLKKALFGFIKAQATLISITTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +I  I+ ++P           I                   I + +  + + P
Sbjct: 251 NYAITIALIIGIVDILPYLGTGIVFVPWIIYAAVSGDVPFAIGLGVLYIVVLVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G + +G LGL IGPV + +I  +
Sbjct: 311 KVLSSSIGLDPLATLVALFVGFKLIGFLGLIIGPVTLVIIRTL 353


>gi|115523770|ref|YP_780681.1| hypothetical protein RPE_1753 [Rhodopseudomonas palustris BisA53]
 gi|115517717|gb|ABJ05701.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisA53]
          Length = 412

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 107/333 (32%), Gaps = 16/333 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +++ +I+ +LY  K FF P+++A ++G    P       ++       AV+     
Sbjct: 78  VLLALLIIVIVAALYVAKPFFLPIVTAFVVGTMLSPAAGFLEQRR-IPRGVSAVLIVGIG 136

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +    +  +    +     L    V   +        +        A       ++ P
Sbjct: 137 FGVVTFIVTLIAAPVVEWSGRLPELGVKLKEKLQAFDGTIVLWQQLQAALGNPDHAVATP 196

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                +         +         F +  + +  S                     + +
Sbjct: 197 IQFPTIEWMQPTYEFLSPTLTEMLLFLVTLVLFIASW-------------KDLRRALVMT 243

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +I   +   + S  L +T I +G G V G   WLAG+P+  ALG + A 
Sbjct: 244 SPNRDTRLRALRILNEIEGSLGSYLLTVTSINLGYGAVTGLICWLAGMPNPAALGALAAT 303

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P     +   + I         L   L  A+  F+    + P ++G  + L 
Sbjct: 304 LNFFPVIGPFVMLIILTLVGIVSFPTLGAGLLAPLGFALLTFVEGHFITPAIIGRRLSLN 363

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  F  L       G +G F+   L+ +  V+
Sbjct: 364 ILAVFITLAFWTWLWGPMGGFLASPLLIVALVL 396


>gi|218132750|ref|ZP_03461554.1| hypothetical protein BACPEC_00611 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992476|gb|EEC58479.1| hypothetical protein BACPEC_00611 [Bacteroides pectinophilus ATCC
           43243]
          Length = 376

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 100/329 (30%), Gaps = 5/329 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-----SKKEESSTFLAVIATVSV 70
           I   + +S+ ++    AP + A  +        ++            + T  A++   ++
Sbjct: 28  ISIAVFLSIRYILPLAAPFVLAFFLSVLLENKVTALADTAHGRLFRGNKTAAAIVIVTAL 87

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                + +  L Y+ + E++ L+S      +          +   G    E+   +    
Sbjct: 88  TAAAAIVIGALGYFAISEIRGLISNYDYYCRMCDAHVLQACERMDGWLGLEIGRMYGMVC 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +  L E+F        +    +          L      + +         ++     
Sbjct: 148 NGVDSLKESFDGGRMASAMGTSFAYASAAMKKMLLLAGAFFMLIISTVYMSRDMNSYRKW 207

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                F      +   + ++    F    II     +V  +   + G P  V +G+   +
Sbjct: 208 KKNTRFREEADVLWSALARLGNVYFKTQLIIICCTAVVCTTGLLIIGNPYAVVIGIAIGL 267

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  +P     +       + + G       + +   +  +   + L   L+G  + +  +
Sbjct: 268 LDALPFFGTGTVLIPWSIMAVLGGNVWHAAVLMTVYVITYFEREILEAKLMGKGLDISPV 327

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                +  G+   G  G  +GPV   LI 
Sbjct: 328 TMMAAIYIGLLVYGFWGFVLGPVSYCLIK 356


>gi|296131289|ref|YP_003638539.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296023104|gb|ADG76340.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 448

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/355 (9%), Positives = 98/355 (27%), Gaps = 23/355 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           R      +G+   ++   + +  +     L+G    +L A  +     PI    +     
Sbjct: 44  RPPRWWGKGLAMAVVAVFVGIFAWDALGALQGLLVNLLIAFFLALALEPIVVWLVRH-GW 102

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A  A +  + + +V         + ++ +LV  V         +           
Sbjct: 103 KRGGAAAAALLGGLVVTLVVFALFGNLFVQQLVQLVKNVPTLYTSAQEMVE--------- 153

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                  +  +                    +   A   G   +    + + +++  ++ 
Sbjct: 154 -------ERFAVQVPEVDDLLRQGAEEWGSEVASGALLVGTTIIGGLFATLTIMLVTYYL 206

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G      +             ++  +    +        ++A    +       + G
Sbjct: 207 LAAGPKFRASICRWLTPNRQQEVLRLWEVTQAKVSDFITTRIVLAAVATVATFVFLAVLG 266

Query: 238 VPSHVALGVITAIMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            P  + L + T +++  +P     I         L    +  A  +  +      + +  
Sbjct: 267 TPYSLPLALFTGVVSQFVPTIGTYIGGALPVAVALTSQGVPQALGVLAFILGYQQVENLW 326

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L P +    +++    +F  ++      G LG F+   + A I  +    +   +
Sbjct: 327 LAPKVSARALEMNAAVSFVVVLAFGAVFGALGAFLALPIAATIQAVANTYVQRHE 381


>gi|212638351|ref|YP_002314871.1| putative permease [Anoxybacillus flavithermus WK1]
 gi|212559831|gb|ACJ32886.1| Predicted permease [Anoxybacillus flavithermus WK1]
          Length = 372

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 113/343 (32%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++   L SLY++     P L AL I F   P+      K +       ++  +
Sbjct: 11  RFLFVIFVIIAGLASLYYVSTLTYPFLIALAITFFINPVVDVLEKKAKMPRALAVIVVLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L    +  L    +   + L + V    Q  +               ++L T   +
Sbjct: 71  FLLALVAGLVTLLVAEIVTGTQYLATVVPNHFQKLVIYIEQFVASQIIPLYNQLATLFKN 130

Query: 129 HPQSLKILSETFLKT----------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              S +    T +++            I  I +          ++    IF ++A FF  
Sbjct: 131 LDTSQQDTIMTNIQSVGTKIATTVGQFIQNILQNIPSIIGWLPNFATIFIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D + +      L          K+   + K +         +     L++     +  V
Sbjct: 191 KDWYRLKALFQKLLPTKVQTSTTKVFAELKKALFGFLKAQATLISITTLIVLVGLLVLRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +I  I+ ++P           I         +         + + +  + + P
Sbjct: 251 EYAITIALIIGIVDVLPYLGTGLVFVPWIVYAAMSGNTHFAIGLGVLYVVVLVQRQVMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+   I L  L T   L  G + +G LGL +GPVL+ +   +
Sbjct: 311 KLLSSNIGLDPLATLIALFVGFKLIGFLGLIVGPVLLVIGRTL 353


>gi|23100493|ref|NP_693960.1| hypothetical protein OB3038 [Oceanobacillus iheyensis HTE831]
 gi|22778726|dbj|BAC14994.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 364

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 119/337 (35%), Gaps = 7/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           FI    L  +     P++ A I+ + + P+ +  + + +       +I  + ++ +  + 
Sbjct: 28  FIFTPLLQLIGAVALPIIGAGILYYLTKPVMNFLVKR-KVPKILSIIIVFLLIISVIALF 86

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +LF++     +   L+  V    +       +       +         +    +     
Sbjct: 87  VLFIWPIARDQANRLIESVPGMIKMVEDFISYWQQNYSSIP------DQVISAINDFAQD 140

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                 N    I  F   F    +   L +I +   LFF  +DG  +   +  L +    
Sbjct: 141 IPAYLENATSNIFGFLGAFIGQLVSIVLGVILIPFFLFFMLKDGNKLVPFITQLFDEKKA 200

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              + +   + KV+ S   G  ++++  G++L   Y + G+   V L +   +M +IP  
Sbjct: 201 KNLQNLLSKIDKVLTSFIQGQLLVSLAVGILLLIGYLIIGLQYSVILALFGMLMNVIPFL 260

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            P      ++ +    +  N   + +   +   I    + P ++G  + L  L     ++
Sbjct: 261 GPYIAVIPALLVGAFQDPMNIFWVAIIMLVAQQIESTLISPNVMGQVLNLHPLTVITVIL 320

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                 G +G+     + A+I  I         ++K+
Sbjct: 321 AAGSIAGFIGILFAVPIYAIIRTIAIHFYQTYVKSKK 357


>gi|300309967|ref|YP_003774059.1| permease [Herbaspirillum seropedicae SmR1]
 gi|300072752|gb|ADJ62151.1| permease transmembrane transport protein [Herbaspirillum
           seropedicae SmR1]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 124/352 (35%), Gaps = 11/352 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLA 63
            Q ++  ++ F++L  L  L    +P ++A IIG+   P      S++            
Sbjct: 10  KQNLVWLIVGFLLLALLIALGPMLSPFVAAGIIGYALNPGVDWIASRRLGPVRVPRFVAV 69

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            I  + ++   +  +L +    + ++  L ++V                 P         
Sbjct: 70  TIMVLLLILAGLALVLIVVPLVLRQIPLLQAQVPPLLDKLNAFVS-----PRLHQLGIDV 124

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L+  +SL     +         +   A   G   L +  +++F+ + LF+  +D   
Sbjct: 125 RLDLAGIKSLLTQQISTSSDEVWTSVLASAKVGGTALLTWLANLLFVPMVLFYLLQDWHQ 184

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             +++  L    +      ++  V  ++     G  ++ +   +    A   AG  S + 
Sbjct: 185 FIKRMQILIPRRWAGRINTMAAEVDGLLGQYLRGQLLVMLVLAVYYSVALTAAGFDSALP 244

Query: 244 LGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +GV+T ++  IP         ++I   +L          + L   +   +    L P LV
Sbjct: 245 VGVLTGLLVFIPYVGFGLGLVLAILAAILQFDGAIGLLWVALIYGVGQVLESFILTPKLV 304

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  L   F L+   +  G +G+ +     A+++VI          + 
Sbjct: 305 GERIGLHPLVVIFALLAFGQLFGFVGVLLALPASAIVSVIALHVRREYLASN 356


>gi|297565745|ref|YP_003684717.1| hypothetical protein Mesil_1315 [Meiothermus silvanus DSM 9946]
 gi|296850194|gb|ADH63209.1| protein of unknown function UPF0118 [Meiothermus silvanus DSM 9946]
          Length = 369

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 105/329 (31%), Gaps = 6/329 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL---FYYGML 87
              +       + + P+   F  + +       +   V ++    +    L         
Sbjct: 41  IVTLAIGFGFAYLTSPVVRWFERR-KLPRWLGVLAVYVGLLVFLALASALLAETVGRFSQ 99

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            + +L + + +A Q     P  L  +P       L ++   + Q +       L     +
Sbjct: 100 MVGKLPATMGVALQWLHDTPANLGAVPLPEEVRSLLSEFGLNLQRILEGFGQSLLGTLQN 159

Query: 148 FIPRF--ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            + +      F +  +      +  ++   +   D   I+  L  L    + +   +I+R
Sbjct: 160 LLSQGGRLVDFLIGLVGGVAQALVALVISIYLLYDLPRIASALLQLIPKPYQSRTLEIAR 219

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
                      G   +A   GL +G    L GVP    LG++  +  +IP    I  T  
Sbjct: 220 KADLAFGGYIRGQLQVAFWVGLTIGVGLALVGVPLAGGLGLLAGVFNLIPYVGVIVSTVP 279

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ L             L   +   +    L P ++G    L  +     ++ G    GL
Sbjct: 280 ALLLAATVGWPTVLLTLLVVWLTNQLEGHLLSPRILGSTTNLHPVTVIAAILIGASLFGL 339

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LG  +     A   ++ ++  +  +  +E
Sbjct: 340 LGALLMVPTAAFAKILIQDYYLKSRLYEE 368


>gi|240173428|ref|ZP_04752086.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
          Length = 384

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 107/352 (30%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +     ++  +  L+    PVL ALI+     P+      ++         +  +
Sbjct: 23  RLLVIFAAALAVIWVISKLEIIVVPVLLALILSALLVPVVDWLDLRRV-PRGAAVSLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +    L F+    ++ + +LV +V  +                  W  E       
Sbjct: 82  GGFAILGGILAFVISQFIVGLPDLVKQVERSIDSSRR------------WLIEGPAHLRR 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N    +   A        +     + ++  L FF   G +I Q +
Sbjct: 130 EQIDNAGNAAIEALRNNQAKLTSGAISTAATITELLTGAVLVLFTLIFFLYGGRNIWQYV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +          +  R     +        ++A+ + + +G+   + GVP  + L  + 
Sbjct: 190 VKIVPVPARDRVLEAGRAGYSSLIGYVRATFLVALTDAIGVGTGLAIMGVPLALPLASLV 249

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     IS     +  L+   +  A            +    L+P ++G  + +
Sbjct: 250 FLGAFIPLLGALISGLLAVVVALLAKGLVYALITLGLLIAVNQLEAHLLQPLVMGRAVSI 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     +  G    G++G  +    +A +    +  +        +    
Sbjct: 310 HPLAVVLAISTGGVLAGIVGALLAVPTVAFLNNAMQVLLAKDPAAAAEQPEE 361


>gi|225181230|ref|ZP_03734675.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
 gi|225168010|gb|EEG76816.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
          Length = 367

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 118/338 (34%), Gaps = 5/338 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI +  + F++  F P L ALI+ +   PI S    +         ++   ++  L +
Sbjct: 25  VSFIFIPLVVFVRLLFLPTLFALILYYLFRPIVSWLQGRNVARP-LAVLMIYATLALLVV 83

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +    +      ++ EL+          I     L +        + +  +         
Sbjct: 84  LIFGTVGVEAYEQLLELIDFFPAYLDQAINAVGALEETY----LFQRFQANDMFSIEDLA 139

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S +    N +  +    S       +  +  + + I LF+  +DG S  + +       
Sbjct: 140 ESVSEFILNALPGVQEGISSAMGFLANAVILFVLLPIILFYLLKDGESFHRFITRHIPEG 199

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +      I R +   + S   G  I+++  G++    + + G+   + L +   +   IP
Sbjct: 200 YREEALTILREIDHGLASFIQGQIIVSMSVGVLAYIGFLIIGIRHALILALFAVVTNFIP 259

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P   T  ++ + +  +   A  + +   I   I    + P ++G  + L  +     
Sbjct: 260 YIGPWIATIPAVIVGLFTSGLMALQVLIVIFIVQQIESLFITPQVMGKKLYLHPMVIIVL 319

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+      GLLGL I      +  +I+      ++  K
Sbjct: 320 LLVVGNLAGLLGLIIAVPTFVIFKIIFSHLYEFLRTKK 357


>gi|56460570|ref|YP_155851.1| permease PerM [Idiomarina loihiensis L2TR]
 gi|56179580|gb|AAV82302.1| Permease PerM [Idiomarina loihiensis L2TR]
          Length = 359

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 115/358 (32%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +  ++++ ++++ + F     AP+L A+ + +         +     S   
Sbjct: 10  QRKFSDPNAVTLFLLLVVVVLVIVFFGSLIAPLLIAISLAYLLDWPVMRLMG-LGLSRLT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I     + L IV LL L      +   L+ ++     +       L ++   +    
Sbjct: 69  ATIITFSLFLALMIVTLLTLVPVIWQQSTTLIQEMPDMVTNLQIWLHKLPEMFPTIVDDS 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T+     +   +     L T  +  I           +   + +I + + +FF  +D 
Sbjct: 129 QITEFTQEVKRRAVSLGESLLTVSLTSIVNV--------MAMLVYLIIVPLLIFFMLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +      L          ++ + +   I +   G  I  +   +V    + L G+   
Sbjct: 181 DILIAHFSRLLP-SNRQLISQVGQEMNLQIMNYIRGKAIEVVVVAIVTFVTFSLFGLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  +  +IP       T   +   L   G       + +   +   +    L P 
Sbjct: 240 ALLSIMVGLSVLIPYVGAAVATIPVVLVALFQFGPTAAFVWVTVAYLVIQALDGNLLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    I L  +     ++      G  G+F    L +L+  +         E  E+ +
Sbjct: 300 LFSEAISLNPVYIIGAVLIFGGIWGFWGVFFAIPLASLVKAVLTAWDSGTGEKAEEQT 357


>gi|307243280|ref|ZP_07525451.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493408|gb|EFM65390.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 386

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 104/337 (30%), Gaps = 13/337 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEES----------STFLAVIATVSVMCLFIV 76
                 P +    + +    I      K   +               +I  + V     +
Sbjct: 43  FIDILKPFIVGFSLAYLLNFIMEFVEGKIVLNLMPKGGKRLVRYLSMIITYILVTLFVFL 102

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              F+F      + +LV+                      +   E     ++   +    
Sbjct: 103 FFKFIFPQVAESVVKLVTDFPHIVNKIYNYIDKFIS---HINLPEPTRMAVNQKVNEIGK 159

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S     TN + F   F         +  L II  I  L           + + ++     
Sbjct: 160 SAIDFATNLVPFFANFFLNIVKSVWNLVLGIIISIYILADKEGFFRLCRKFIFAIFTKDT 219

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                K++R+   +     +G  I ++   ++      +  +P  + L  I  I  +IP 
Sbjct: 220 SDNILKVTRLSNDIFGKFIIGKIIDSVIIAIITFIILSIVKMPYVILLTFIIGITNVIPF 279

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P      S+ L++  +   A  L +   I   +    + P ++G  I +      F L
Sbjct: 280 FGPFIGAIPSVLLVLIVDPIKALWLIVIIFIIQQLDGNVIGPKILGDSIGISSFWILFSL 339

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   +  G++G+ IG  L A+I  I  E+I    + K
Sbjct: 340 LVAGKFFGIIGMVIGVPLFAVIYTIVAETINDRLKTK 376


>gi|71281155|ref|YP_269883.1| putative permease [Colwellia psychrerythraea 34H]
 gi|71146895|gb|AAZ27368.1| putative permease [Colwellia psychrerythraea 34H]
          Length = 357

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 103/346 (29%), Gaps = 12/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               +P  +   +I+  I + +        PV  A+ + F      +  +     S +  
Sbjct: 11  RKFSDPHAVTLVVILVCIALFIALFSNLLMPVFVAIALAFLLDLPVNKLMQ-SSMSRSSA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+  V+ +   ++ +L L      +   L+ +V      G      L +          
Sbjct: 70  TVVVVVTFLSFSLLAVLGLMPIIWKQSSNLLQEVPHMISQGQGYLLTLPEKYPDFVHVSQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +       +          ++ I               + +I + + +FFF +D  
Sbjct: 130 IESFIVMVNDNLLEWGQVALRASLNSISDIV--------ALMVYLILVPLMVFFFLKDKT 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   +             K+S+ + + I +   G  I  I  G     A+    +   +
Sbjct: 182 ELMSSIAHFLPKE-RRMAIKVSQEMNQQILNYIRGKVIEIIIVGASTTIAFIFLDLQYAL 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            LGV+  +  ++P       T   +   L   G       + L   +   I    + P L
Sbjct: 241 LLGVLVGLSVLVPYVGATVVTLPVLLVALFQFGISSEFGYVMLAYGLIQAIDGNVIVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  +     ++      G  G+F    L  L+  +     
Sbjct: 301 FSEAVNLHPVVIIIAVIFFGGLWGFWGIFFAIPLATLVKAVINAWP 346


>gi|15803986|ref|NP_290022.1| hypothetical protein Z4848 [Escherichia coli O157:H7 EDL933]
 gi|291284814|ref|YP_003501632.1| hypothetical protein G2583_4177 [Escherichia coli O55:H7 str.
           CB9615]
 gi|25325137|pir||C86015 hypothetical protein yhhT [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gi|12518133|gb|AAG58583.1|AE005570_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|290764687|gb|ADD58648.1| hypothetical protein G2583_4177 [Escherichia coli O55:H7 str.
           CB9615]
          Length = 364

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 28  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 83  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 143 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 202

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 203 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 246

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 247 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 307 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 338


>gi|300717916|ref|YP_003742719.1| putative permease [Erwinia billingiae Eb661]
 gi|299063752|emb|CAX60872.1| putative permease [Erwinia billingiae Eb661]
          Length = 357

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/358 (13%), Positives = 115/358 (32%), Gaps = 12/358 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I    I+      L+F  G  AP+L AL++ +           +   S T+
Sbjct: 10  RRRFSDPQAIALLAILIAAFCILFFFNGLLAPLLVALVVAYLLEWPTVRLE-RLGCSRTW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +    L +V +L +      +   L  ++             L +    +    
Sbjct: 69  ATAIILIIFASLLMVLVLVVAPVAWQQGINLAHELPTMLNGLYHYATRLPERFPTL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      + + +     +   D + +++    +  +   + ++ + + +FF  +D 
Sbjct: 125 ----MDVGIVDIVVENLRSRLSGMGDQLVKYSLASLVGIMTLAIYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + + +   G  +  +  G+     +   G+   
Sbjct: 181 DQMLAAISRVLP-RNRGLAGQVWAEMNQQVSNYIRGKVLEMVVVGIATWIGFLAIGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    ++ T   I   L   G   +   + +   I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYVGALAVTIPVIGVGLAQWGLGGDFWTMIIVYLIIQGLDGNILVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L    + L  L     +V      G  G+F    L  LI  +       +    +K +
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWPDELNVEPKKRT 357


>gi|260913159|ref|ZP_05919641.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
 gi|260632746|gb|EEX50915.1| PerM family permease [Pasteurella dagmatis ATCC 43325]
          Length = 417

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 106/337 (31%), Gaps = 16/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + IIL  +        P L +L I     PI     S++             
Sbjct: 10  KVLVALASIVIILAGVKVASEIAIPFLLSLFIAIICSPIIRFMTSRRVPHW--------- 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L I  LL +  +    +  L++         IP  R L         +     ++ 
Sbjct: 61  ----LAITLLLIMILFVFFFLLSLINSTAREFTQSIPQYRILLSERIASIITLAKKWNIP 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S +   E    +  ++ +      F  +  +  +  + +I  L         ++   
Sbjct: 117 LDLSTEKTMEYMDPSVIMNLVSSTLLSFSGVVTNVFVLFLVVIFMLSEAPFAKHKLALVF 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S   ++     +     + + + S     T+ ++  G+ +     L  V   +    ++
Sbjct: 177 SSDVRNIHRE--EHYINRILQGVISYLGVKTLTSLLTGICVYILLELTDVQYAILWATLS 234

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    I      +   L+         + +       IV   L P ++G  + L
Sbjct: 235 FLLNYIPNIGSIIAAVPIVVQALLLNGFPTGFGVAIGVGAINMIVGNILEPKMMGRTLGL 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  + 
Sbjct: 295 STLVVFLSLLFWGWLLGTVGMLLSVPLTMVLKIALEA 331


>gi|307565980|ref|ZP_07628438.1| membrane family protein [Prevotella amnii CRIS 21A-A]
 gi|307345168|gb|EFN90547.1| membrane family protein [Prevotella amnii CRIS 21A-A]
          Length = 360

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 116/350 (33%), Gaps = 13/350 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAVIAT 67
           +  +  +I+  +  +L  L     P   A ++ +  +P+      K    S     ++  
Sbjct: 12  RWTVITLILAAVFFTLKALSEVLLPFFIAWLLAYLLYPVVKFIQYKMHVTSRAISIILTF 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ +    +  +    + EM++L        Q         + +            H 
Sbjct: 72  ILIIAIIAGIVFIIVPPFISEMEKLEVLANKYIQSNTHSNNIAAMLKQWFTTHRFEINHF 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +      +T +                   +   ++    ++ +FF   D  S+ + 
Sbjct: 132 LKSRDFTDAIKTAMPQVFA------LLGQTANVVFSVIASFITLLYMFFILLDYESLGEN 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              +    + ++ + ++  V K + S   G  ++A+   ++    + +   P  + LG++
Sbjct: 186 FFKMIPRKWRSFSRVLASDVEKALNSYIRGQGMVALCMAIMFCIGFSIIDFPMAIGLGIL 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLI------KGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             I+ ++P    ++    +I  L+                 L   I   I D  + P ++
Sbjct: 246 IGILDLVPYLHALALIPTAILALMKAADTGHNFWMIFGGALLVFIIVQIITDMIITPKIM 305

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G  + L        L      +G +GL I   L  +I   WK  +   +E
Sbjct: 306 GKAMGLNPAMLLLSLSIWGALLGFIGLIIALPLTTIIIAYWKRYVTKDEE 355


>gi|284053837|ref|ZP_06384047.1| hypothetical protein AplaP_20499 [Arthrospira platensis str.
           Paraca]
 gi|291566895|dbj|BAI89167.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 382

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 115/340 (33%), Gaps = 4/340 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +    I +  L+ +K     + +A+++      +   F  + +   +    ++     
Sbjct: 7   IGFTAFLIAIYILWRIKQALLMIFAAVVLATALNRLTRQFQ-RLKLPRSLAVFLSISLFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP---GGMWASELWTKHLS 128
               +  L +    + ++++L  +V    + G+ +   L D           E  ++   
Sbjct: 66  LGITIGFLLVVPPLINQLEQLAKQVPAGLEQGLKLLNLLIDYLRTDLNGPLREYLSEVSR 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + ++I           + +           ++  +SI+ +++       D  +  +  
Sbjct: 126 DLRQIRIEQIIQQAQALSNQLIGGFGVVVGTTVEGLVSILLILVLTLMLLADPQAYRRSS 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +      I       +    +G  +  IG  L+     W+  VP   A  ++ 
Sbjct: 186 LQLIPAFYRRRMNDILDTCEIALGRWLIGALLNMIGVTLLTVVGLWILRVPLIFANAILA 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P       + + +  + + AT + +   I   I    + P+L+   + L 
Sbjct: 246 GLLNLIPNIGPAVSVIPPMAIALLDSPWKATLVVMLYIIIQQIETAVIMPYLMAHQVSLL 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T       +   G  GL +   L  +  V+ KE ++ 
Sbjct: 306 PAITLLAQGFFLTFFGFGGLILALPLAVVGQVLIKEILIR 345


>gi|317475118|ref|ZP_07934386.1| sodium pump decarboxylase [Bacteroides eggerthii 1_2_48FAA]
 gi|316908762|gb|EFV30448.1| sodium pump decarboxylase [Bacteroides eggerthii 1_2_48FAA]
          Length = 376

 Score =  114 bits (285), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 118/349 (33%), Gaps = 11/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++  +I+  +L+ L  L     P   A +I +  +P+ + F  K +  +  +++   +
Sbjct: 13  RGVILGVIIIGLLMLLKRLSSVLLPFFIAWLIAYLVYPLVTLFQYKLKFKNRIVSIFCAL 72

Query: 69  SVMCLFI-VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             + +        L    + E   + + ++    HG       + +   +  +       
Sbjct: 73  FTILIIGAGAFYLLVPPMIQEFGRVQALLIQYFSHGTYNSNVPTSLSEFLRDNIDAKFIT 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L         +  +   +           L    +++ + F   D  SI++ 
Sbjct: 133 ELFNKENLLDALKEAVPRLWSLLSDSIDLLFSVFTIFL----ILLYVIFILLDYESIAEG 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +  +   I   +   +   F G   +A+  G++    + +   P  + LG+ 
Sbjct: 189 WTHLVPIKYRPFTISILNDIKTGMNRYFRGQAFVALCVGILFSIGFLIIDFPLAIGLGLF 248

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW------GAIELFIVDKTLRPFLV 301
              + M+P    I F    +  ++K +        +         I   I D  + P ++
Sbjct: 249 IGALNMVPYLQVIGFVPTIVLAILKASDTGGNFWIIIASAIAVFIIVQAIQDGFIVPRVM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G    L        L      MG+LG+ I   L  L+   ++  I+  +
Sbjct: 309 GKITGLNPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKE 357


>gi|113969827|ref|YP_733620.1| hypothetical protein Shewmr4_1485 [Shewanella sp. MR-4]
 gi|114047055|ref|YP_737605.1| hypothetical protein Shewmr7_1550 [Shewanella sp. MR-7]
 gi|113884511|gb|ABI38563.1| protein of unknown function UPF0118 [Shewanella sp. MR-4]
 gi|113888497|gb|ABI42548.1| protein of unknown function UPF0118 [Shewanella sp. MR-7]
          Length = 368

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  I     P        +         +A +
Sbjct: 12  KGFAVMAFVVIILAGIKAASPIVVPFVLSSFIAVICNPAIGLMTKYRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       +    W+      +       + L+
Sbjct: 67  LLMGFIVLMGLWLASLVGSSINEFSKQLPQYRDQLVEQFSWVLHKLQALNIQISKEQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     QQ+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKLHLALDDPDMRLQQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  GL++G    + GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATGLIVGVGLAVIGVDYALLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    +       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTAMLYVGANMVMGNVVEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|94496502|ref|ZP_01303079.1| hypothetical protein SKA58_09926 [Sphingomonas sp. SKA58]
 gi|94424248|gb|EAT09272.1| hypothetical protein SKA58_09926 [Sphingomonas sp. SKA58]
          Length = 392

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 116/334 (34%), Gaps = 13/334 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
               ++  +  +L     FF P+ +AL+I     P+      +    S   A+++ +  +
Sbjct: 32  TGLGLILALPFALRAGAEFFLPLTAALVIAIALVPLLEWMERR-GLPSGVAALLSVIGFL 90

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L+ +          L  ++     +  PV    S++                 Q
Sbjct: 91  LVANTALVLIVVPATDWFSALPQRLPQIQANLAPVIDLYSNLQ---------RFVDETLQ 141

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDS 190
            L        +T  +D                 + ++F ++ ++FF      + ++ ++S
Sbjct: 142 MLATGPVAAAQTAVVDAPRSLLQFAATSAPAAIIQMVFALLIIYFFLAGWTRLRRRTINS 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G         ++ + V     +  + +  I +  GL +  A WL G+PS +  G I A+
Sbjct: 202 RGSFDGAMAVARVIQNVVDATSAYVITIATINLCLGLAVAVALWLIGMPSPLMWGGIIAL 261

Query: 251 MAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +P   P+   A+      ++  +++ A            +    + P L+G  + + 
Sbjct: 262 LNFVPYFGPMLAAALLALGGLMVFDDVWFALLPAALQIAFHLVEANVVTPMLLGRRLTMN 321

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L     L       G  G  +G  L+ ++  + 
Sbjct: 322 PLLILVSLTFWGWVWGTPGALLGVPLLIILQTVV 355


>gi|86606622|ref|YP_475385.1| hypothetical protein CYA_1978 [Synechococcus sp. JA-3-3Ab]
 gi|86555164|gb|ABD00122.1| putative membrane protein [Synechococcus sp. JA-3-3Ab]
          Length = 378

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/324 (15%), Positives = 108/324 (33%), Gaps = 8/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     V +A+++      +      +         +I  ++V+   I+  L +   
Sbjct: 20  WQIRQILLLVFAAIVLAVALDTLAQ-IPQRYGFRRGPSLLITGLTVLVGAILVGLIVVPP 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              +++ L          G+P     +          L T            S     T 
Sbjct: 79  LADQLRRL-------FTDGVPAGIVQAQRLFESLILSLPTDIELPTLRELANSLVPQATE 131

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +  F S     F    L+++F+II       D  + S+   S+    +    + I 
Sbjct: 132 LVRQVRDFFSESFTAFFATLLNLLFVIILTILLLVDPQAYSRAFVSVFPAFYRPRVRYIL 191

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +     +R   +G+   +    L+ G   W+ GVP  +A  V+  +   IP   P     
Sbjct: 192 KRCELALRGWLVGILFTSSLVMLLSGIGLWILGVPLSLANAVLAGLFNFIPNIGPTLSVV 251

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + + +    + +  +         +      P ++   + L    T    V      G
Sbjct: 252 APMLVALTDAPWKSLAVLGLYIFIQQLESSVFTPLVMSRQVSLLPALTLVAQVTSAFFFG 311

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           +LGLF+   L A++ V  +E ++ 
Sbjct: 312 VLGLFLAVPLAAILQVWIQEVLIR 335


>gi|163845609|ref|YP_001633653.1| hypothetical protein Caur_0006 [Chloroflexus aurantiacus J-10-fl]
 gi|222523308|ref|YP_002567778.1| hypothetical protein Chy400_0006 [Chloroflexus sp. Y-400-fl]
 gi|163666898|gb|ABY33264.1| protein of unknown function UPF0118 [Chloroflexus aurantiacus
           J-10-fl]
 gi|222447187|gb|ACM51453.1| protein of unknown function UPF0118 [Chloroflexus sp. Y-400-fl]
          Length = 386

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 122/358 (34%), Gaps = 17/358 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +I+ + +  L+ +     P + A+I  +   P+      +         ++  +
Sbjct: 15  KWISSALIVVLTIWLLFAVTHILPPFIGAIITAYLFNPLIGWLHRRTRIGRAIWIIVLYI 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +       L+   + + ++L +   +  +           I  G +   L      
Sbjct: 75  VAFFVLYSLFTALWPRIVQQSRDLAANAPVIIRELTIFFEQNQTIEVGDFVISL------ 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        L  +   ++     +     L+  + ++  +I  F+       +    
Sbjct: 129 ---APLEAQVIGLIRDVAGWLSGNVPKIVFSALESVIYLLVYLIITFYLLLQAPQLKAWS 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL    +      +   + +V  +   G  I+ +   ++L     +  VP  + + V +
Sbjct: 186 RSLIPAPYRREIGHLGYQIDRVFSAYIRGQLILIVIMSVLLYIPLSILQVPYALVIAVAS 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLFLWGAIELFIVDKTLRPFL 300
            ++ ++P   P S   +++ + +          N+  A  L +   +   I D  + P +
Sbjct: 246 GVLEILPIIGPWSAAGIAMTVALFQPVTPFGLSNVALAVLLGIIYFVLRQIEDHFIIPNV 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G  ++L      F ++ G    G  GLFI   + A+I ++       + +  E  S 
Sbjct: 306 MGPLVRLHPGVVIFAILAGGALAGAFGLFISIPIAAVIRILLSYIYRKLTDQPETPSD 363


>gi|117919992|ref|YP_869184.1| hypothetical protein Shewana3_1544 [Shewanella sp. ANA-3]
 gi|117612324|gb|ABK47778.1| protein of unknown function UPF0118 [Shewanella sp. ANA-3]
          Length = 368

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  I     P        +         +A +
Sbjct: 12  KGFAVMAFVVIILAGIKAASPIVVPFVLSSFIAVICNPAIGLMTKYRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       +    W+      +       + L+
Sbjct: 67  LLMGFIVLMGLWLASLVGSSINEFSKQLPQYRDQLVEQFSWVLHKLQALNIQISKEQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     QQ+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKLHLALDDPDMRLQQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  GL++G    + GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATGLIVGVGLAVIGVDYALLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVAANMVMGNLVEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|238062358|ref|ZP_04607067.1| hypothetical protein MCAG_03324 [Micromonospora sp. ATCC 39149]
 gi|237884169|gb|EEP72997.1| hypothetical protein MCAG_03324 [Micromonospora sp. ATCC 39149]
          Length = 527

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 88/287 (30%), Gaps = 18/287 (6%)

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +     ++     +  EL  ++    Q                 A+       +   
Sbjct: 258 GILVGVGALVWNLTASQFGELSQELDQGLQRTRDF------------ATSTLPVTDAQLD 305

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L   +   L     D +            +   S++  ++ LFF  +DG S+   +   
Sbjct: 306 KLIRQTRDGLGGGAPDPVGG-----ARTAAEVAGSVLLSLVLLFFLLKDGRSMWHWVLRR 360

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +  R+  + + +   G  IIA  + L +G A  L  VP  + L +IT + 
Sbjct: 361 TTGPNRDVAAEAGRVGWRTLGAYSRGTMIIAAIDALGIGLALVLLRVPLALPLALITFLG 420

Query: 252 AMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +P        AV++ + +       A            I    L P ++   ++L   
Sbjct: 421 GFVPIIGATVAGAVAVLVALAAKGPTIALLTLAAVIAVQQIEGNLLEPLVMKRQVQLHPA 480

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                +  G    G+ G F+   + A+   +        +    + +
Sbjct: 481 VILVAVTAGTLIAGIAGAFVSVPITAVAYRVIDTVQRHRQAATARPA 527


>gi|228477407|ref|ZP_04062043.1| conserved hypothetical protein [Streptococcus salivarius SK126]
 gi|228250842|gb|EEK10030.1| conserved hypothetical protein [Streptococcus salivarius SK126]
          Length = 378

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 109/334 (32%), Gaps = 18/334 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMCLFIVPLLFLF 82
           P L    I F    + S +              +       + A  ++  +F   +  + 
Sbjct: 41  PFLVGAGIAFVVNILMSFYEKLLVKFIPFGFITKIKRPIALLSALATIGLVFTWVVFTVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+S+   A  + I        +   +      T+      S        + 
Sbjct: 101 PDLIDSINTLISQDRSAINNLINWLLKNKSLQKIIQDLGGVTQVRELINSYSAQLLQQIM 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPAY 199
                F+    S          +++   I+   +       +  Q++ L +     +   
Sbjct: 161 NGLTSFLTSLTS-----LPSTLINLFISIVFSCYVLAGKEKLGNQVNRLVDVYLGRYGKT 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+    R+ F+  +I A   G +      +   P    + ++    AMIP    
Sbjct: 216 FHYVVAILNNRFRNFFVYQSIEACILGTLCYIGMRIFDFPYAATISILIGFSAMIPVVGA 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L++  ++  A     +  I        + P++VGG   LP +   F +  G
Sbjct: 276 YIGVTIGTILIMTHSVTLALLFIAYVVILQQFEGNLIYPYVVGGSTGLPGIWVIFAITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G+LG+ +   + A +  I K++++  +E K
Sbjct: 336 SALGGILGMLVSVPVAATLYQIVKDNVVRREEAK 369


>gi|220915912|ref|YP_002491216.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953766|gb|ACL64150.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 380

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 119/326 (36%), Gaps = 7/326 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +K F+     A ++            ++        A + T  V+   +VP+  L   
Sbjct: 28  WMVKPFWVAFFLAAVLTAALRRWMEWLSARLRGRRALAAGLLTAGVLLAGVVPVAALGAV 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E  + +  +  A Q        +  +   +        H +         +      
Sbjct: 88  LIREAVDGIQWLRSALQS-----EGVWGLVSRLPGPIEELAHRAVTALGDPERQLQQLAG 142

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                             + L  + M+IALFFF  DG  +   +D+         ++ + 
Sbjct: 143 QGGQAAAAVGGVLAATGTFVLQTVLMLIALFFFLVDGQRLIAWVDARVPLRAGQ-FRTLV 201

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
               +   S        A  + +   + Y +A  P+ + L V+T ++A+IP         
Sbjct: 202 EDFRRTTLSVVAATAATAGIQTVTALAGYLIARAPNPIFLAVLTLVVALIPAVGATAMVL 261

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           AV+   L  G+  +   L +WGA  + +VD   RP+L+ G + L     FF L+GG+   
Sbjct: 262 AVAALQLATGHTVSGIFLAIWGAAVVSLVDNVARPYLLKGGMALHGGVVFFALLGGLAAF 321

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAI 349
           G +GL +GP+++  +  +       +
Sbjct: 322 GGIGLILGPLVVTFLVTVLNMYRREL 347


>gi|85375175|ref|YP_459237.1| hypothetical protein ELI_11740 [Erythrobacter litoralis HTCC2594]
 gi|84788258|gb|ABC64440.1| hypothetical protein ELI_11740 [Erythrobacter litoralis HTCC2594]
          Length = 360

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/342 (19%), Positives = 142/342 (41%), Gaps = 7/342 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + +  +  +  F  P+L + +      P+Y   +      +   A+   + +    ++P+
Sbjct: 23  VTIGLVLVIWPFVMPILWSALAAILFQPLYQRILGNLNGKANQAAIATLLIIFFAVLLPM 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           +++    + +   +V            +   + D       + L  +       L+  ++
Sbjct: 83  IWIGSAIVRQAANVVIAFQEGRIDVATLVGQIFDALPSNLRNMLDAQGWGDFADLQARTQ 142

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L  +    I + A   G   L Y L+    +   +F  RDG  I Q +      L   
Sbjct: 143 ELLTQSA-GLIAQQALVIGGGALGYVLAFGVGLYITYFLLRDGKGIGQAVMEGVP-LQKD 200

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++++     ++R+T  G  ++ I +G +    +W+ G+PS +  G++ A+ +++P   
Sbjct: 201 VAERLADKFLNIVRATIKGSVVVGIVQGALGALTFWIVGLPSVLLFGLVMAVFSLLPAIG 260

Query: 259 P-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           P I +   +I+L   G I+    + + G   + + D  LRP LVG    +P        +
Sbjct: 261 PAIVWVPAAIWLFATGAIWQGIVVVVSGVAVIGMADNLLRPILVGRDTGIPDWIILVTTL 320

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           GG+ TMGL G+ +GP+L  L    W      ++E+ E + +N
Sbjct: 321 GGIATMGLSGIVLGPMLAGLFLAGWTI----LREHNEAVDAN 358


>gi|326799548|ref|YP_004317367.1| hypothetical protein Sph21_2142 [Sphingobacterium sp. 21]
 gi|326550312|gb|ADZ78697.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 358

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 118/334 (35%), Gaps = 15/334 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + + + + + +  LY  K F  P+  A ++      I      +   +    ++I  + 
Sbjct: 7   AVNKLLFLVLGIAILYVGKPFLIPITLAGVLATLFVGIAKKLEDR-GLNRALSSLIGVLL 65

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++  F   +  L +      + L             +  W++   G              
Sbjct: 66  IVLAFATIIALLVWRLSDFSENLAGMQERVLALFEKLKTWINQTLGI------------S 113

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 L +   ++ G          F    +   +  + +++  F F      +   + 
Sbjct: 114 SDQQAALVDKAEQSIGSSGGSGTILSFAGGTMSILVDSLLVLVYTFLFLLYRSRLKNFIL 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L ++      +KI      V ++   G+ ++ +   ++ G  + + GV + +   ++  
Sbjct: 174 KLVDNTKKNQTEKIINKSADVSKNYLAGLALMIVMLWILYGIGFSVVGVKNALFFAILCG 233

Query: 250 IMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++ ++P    I+ T++++   +   G       + +   +  F+    L P +VG  + +
Sbjct: 234 VLEIVPFVGNITGTSLTVLATVAQGGGNDKIIGVLIVYLVVQFVQTYILEPLVVGDQVNI 293

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L T   LV G    G+ G+ +   L+ +I +I
Sbjct: 294 NPLFTIIALVLGELIWGIGGMVLAIPLLGIIKII 327


>gi|291086376|ref|ZP_06355611.2| permease, PerM family [Citrobacter youngae ATCC 29220]
 gi|291068043|gb|EFE06152.1| permease, PerM family [Citrobacter youngae ATCC 29220]
          Length = 385

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 110/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +          +A   
Sbjct: 49  ILLKLAALVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVRRP-----VAITL 103

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   N+       +L ++   +       + L  
Sbjct: 104 VVVVMLIVLTALVGVLASSITEFMAMLPKYNKELTRKVLYLQEMVPFLNLHMSPERMLQR 163

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T      +           M  +     +  +   L F   +       L 
Sbjct: 164 MDSDKLMTFTTTLMTSLSGAMASVVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 223

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L G+   +  GV+  
Sbjct: 224 RAL----------------KGVSHYLALKTLLSLWTGAIVWLGLALMGIQFALMWGVLAF 267

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+   I+    +     +   ++   L P ++G  + L 
Sbjct: 268 LLNYVPNIGSVISAVPPMIQALLFNGIYECVLVGALFLVVHMVIGNILEPRMMGHRLGLS 327

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 328 TLIVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 359


>gi|303239293|ref|ZP_07325821.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
 gi|302593079|gb|EFL62799.1| sporulation integral membrane protein YtvI [Acetivibrio
           cellulolyticus CD2]
          Length = 360

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 100/326 (30%), Gaps = 2/326 (0%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + +   +    + AP L A  +     P+    I K   +     V + + V+ +    
Sbjct: 19  VLGIFVFFNSILYIAPFLIAFALSSLVEPLIKFLIKKVRLNRKIATVFSLLLVLVIVGGL 78

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L  L      E   L   +   +       R   +            + ++      I  
Sbjct: 79  LALLISRIYQEALSLYDMMPQYSIEIYNNIRNYIN--KASDIYFKLPQEVTKNAEGMIAD 136

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
            T   +       +      +      + +I  I++ +F   D   I   +       + 
Sbjct: 137 LTSTLSGIGSRFAKGVFNTAISIPQAIIFVIVTILSTYFMAADREKIYNYIKFNVPESWV 196

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                I   +   +        I+     + L   + + GV  ++ LG++ +I+  +P  
Sbjct: 197 DNVVSIKNDMFAALFGYIRAQLILMSITFVELSIGFGIIGVRQNLLLGLLVSIIDALPIL 256

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                                    +     + +V + + P ++G  I L  L T   + 
Sbjct: 257 GTGGVLIPWSIYNFITGDIRMGISLIILYGVVLVVRQMIEPKVLGQQIGLHPLVTLLSMY 316

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWK 343
            G+R    +G+ IGP+ + L+  I +
Sbjct: 317 VGLRVFSFIGMIIGPITILLLKNILQ 342


>gi|22125311|ref|NP_668734.1| permease [Yersinia pestis KIM 10]
 gi|45442464|ref|NP_994003.1| hypothetical protein YP_2690 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597105|ref|YP_071296.1| permease protein [Yersinia pseudotuberculosis IP 32953]
 gi|108808253|ref|YP_652169.1| hypothetical protein YPA_2259 [Yersinia pestis Antiqua]
 gi|108811479|ref|YP_647246.1| membrane protein [Yersinia pestis Nepal516]
 gi|145599446|ref|YP_001163522.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149365071|ref|ZP_01887106.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|153950918|ref|YP_001400221.1| permease PerM [Yersinia pseudotuberculosis IP 31758]
 gi|162421859|ref|YP_001607490.1| putative permease PerM [Yersinia pestis Angola]
 gi|165926924|ref|ZP_02222756.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165936094|ref|ZP_02224664.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166011254|ref|ZP_02232152.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212327|ref|ZP_02238362.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399010|ref|ZP_02304534.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422722|ref|ZP_02314475.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167424731|ref|ZP_02316484.1| putative permease PerM [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470403|ref|ZP_02335107.1| putative permease PerM [Yersinia pestis FV-1]
 gi|170023599|ref|YP_001720104.1| hypothetical protein YPK_1357 [Yersinia pseudotuberculosis YPIII]
 gi|186896196|ref|YP_001873308.1| hypothetical protein YPTS_2894 [Yersinia pseudotuberculosis PB1/+]
 gi|218930113|ref|YP_002347988.1| hypothetical protein YPO3068 [Yersinia pestis CO92]
 gi|229838668|ref|ZP_04458827.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895732|ref|ZP_04510903.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|229899234|ref|ZP_04514377.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901740|ref|ZP_04516862.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|270489933|ref|ZP_06207007.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294504812|ref|YP_003568874.1| hypothetical protein YPZ3_2702 [Yersinia pestis Z176003]
 gi|21958188|gb|AAM84985.1|AE013744_8 putative permease [Yersinia pestis KIM 10]
 gi|45437329|gb|AAS62880.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590387|emb|CAH22027.1| putative permease protein [Yersinia pseudotuberculosis IP 32953]
 gi|78926791|gb|ABB51608.1| putative membrane protein [Yersinia pestis]
 gi|108775127|gb|ABG17646.1| membrane protein [Yersinia pestis Nepal516]
 gi|108780166|gb|ABG14224.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115348724|emb|CAL21670.1| putative membrane protein [Yersinia pestis CO92]
 gi|145211142|gb|ABP40549.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149291484|gb|EDM41558.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152962413|gb|ABS49874.1| putative permease PerM [Yersinia pseudotuberculosis IP 31758]
 gi|162354674|gb|ABX88622.1| putative permease PerM [Yersinia pestis Angola]
 gi|165916239|gb|EDR34846.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165921275|gb|EDR38499.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165989932|gb|EDR42233.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206258|gb|EDR50738.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958429|gb|EDR55450.1| putative permease PerM [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051514|gb|EDR62922.1| putative permease PerM [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056613|gb|EDR66382.1| putative permease PerM [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750133|gb|ACA67651.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           YPIII]
 gi|186699222|gb|ACC89851.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681669|gb|EEO77763.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|229687636|gb|EEO79709.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695034|gb|EEO85081.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701538|gb|EEO89566.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|262362875|gb|ACY59596.1| hypothetical protein YPD4_2689 [Yersinia pestis D106004]
 gi|262366798|gb|ACY63355.1| hypothetical protein YPD8_2682 [Yersinia pestis D182038]
 gi|270338437|gb|EFA49214.1| putative membrane protein [Yersinia pestis KIM D27]
 gi|294355271|gb|ADE65612.1| hypothetical protein YPZ3_2702 [Yersinia pestis Z176003]
 gi|320014369|gb|ADV97940.1| putative membrane protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 354

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 116/350 (33%), Gaps = 12/350 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +PQ I   +I+      LYF  G  AP+L+AL++ +      +    +   S ++
Sbjct: 10  RRRFTDPQVITLLVILLAGFCILYFFSGILAPLLAALVLAYLLEWPTARLQ-RIGCSRSW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  V  + + ++ +  +      +   L S +             L      +    
Sbjct: 69  AASIVFVLFVSIMLLAVFVVAPTAWQQGINLASDMPKMINKFNDFAHTLPARYPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   D + +F+    +  L   + +I + + LFF  +D 
Sbjct: 125 ----VDAGIVDMMAENLRSKMSGLGDSVVKFSLASLIGLLTLAIYLILVPLMLFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     +++ G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWVEMNQQITNYIRGKVLEMVIVGIATYLVFFIMGMNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP    +  T   +   L   G   +   LF+   +   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAVIVTIPVVLVALFQWGIGADFWTLFVAYLVVQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           L    + L  L     ++      G  G+F    L  L+  +        
Sbjct: 300 LFSEAVNLHPLVIILSVIIFGGMWGFWGVFFAIPLATLVKAVIHAWPEEF 349


>gi|254785195|ref|YP_003072623.1| permease [Teredinibacter turnerae T7901]
 gi|237687517|gb|ACR14781.1| putative permease [Teredinibacter turnerae T7901]
          Length = 367

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 120/361 (33%), Gaps = 12/361 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +     + + ++  +++   ++ L  L    AP+++A+II F    +             
Sbjct: 9   LERYFADEEAVLVAVLLVASVIILVTLGHVLAPMIAAIIIAFLMQGMVQRLNGW-GIPHN 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  + + C   + L+F+      ++  L+++       G  +   L +    +   
Sbjct: 68  LSVTLTFLVLTCSIFLSLVFVVPALWRQLINLLNETPRMLVEGQNLLLLLPEKYPAL--- 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                         I +     T     I  F+     + +   + ++ + I +FFF +D
Sbjct: 125 -----VTELQVKELIATLRIEMTQWGQSILSFSLTQLPVLVAALIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   L ++         +KI   +   I +   G  I  +  G +    + L  +  
Sbjct: 180 GEQMINWLSNMLPTR-RPVMRKIWMEMNLQIANYVRGKVIEIVIVGGISSITFSLLDLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG+   +  +IP       T     +     G   +   + L   +   +    L P
Sbjct: 239 ALLLGISVGLSVLIPYIGAAMVTLPVAVIGFFQWGWSNDFFYIMLAYGVIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L    +K+  +     ++      G  G+F    L  L   I      A+ E +  I+ 
Sbjct: 299 LLFSEAVKMHPVAIVLAVLVFGGLWGFWGVFFAIPLATLCKAIMNAWPTAMLEERPAIAL 358

Query: 359 N 359
           +
Sbjct: 359 D 359


>gi|237746880|ref|ZP_04577360.1| permease [Oxalobacter formigenes HOxBLS]
 gi|229378231|gb|EEO28322.1| permease [Oxalobacter formigenes HOxBLS]
          Length = 359

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/328 (15%), Positives = 107/328 (32%), Gaps = 11/328 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK----KEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
            P ++  I+ +   PI     SK             +I  + ++ +     L +    + 
Sbjct: 33  TPFIAGAILAYALNPIVDWLRSKRIGTLRLPRLIAVIIVMLLLIAIVTAFALIMIPMLIR 92

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E   L  ++                 P             +  + +              
Sbjct: 93  EWPMLYEQIPAFIAKVNNYLS-----PILNELGIQIPADNAGIKKILTEQFVPKGDGVWK 147

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   A   G   L +  ++I + + LF+  +D   + ++L  +    +       SR V
Sbjct: 148 SLIASAKFGGTAVLTWAWNLILIPVVLFYLLKDWHIMMRKLRDMIPRRWVTRAVSFSREV 207

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             ++     G  ++ +           LAG    + +G++T ++A IP        A++I
Sbjct: 208 NSMLAQYLRGQLLVMVILSSYYSITLALAGYNVALPVGIMTGMLAFIPYIGICFGLALAI 267

Query: 268 --YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              LL    +     L +            + P LVG  I+L  L   F L+   +  G 
Sbjct: 268 TATLLQFTGMEAWITLGIIYGFGYSFDGLLMTPKLVGDRIQLHPLIVIFALLAFGQLFGF 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           +G+ +     A+++V +K       ++ 
Sbjct: 328 VGILLALPSSAILSVAYKHLRNYYFDSN 355


>gi|226330354|ref|ZP_03805872.1| hypothetical protein PROPEN_04271 [Proteus penneri ATCC 35198]
 gi|225201149|gb|EEG83503.1| hypothetical protein PROPEN_04271 [Proteus penneri ATCC 35198]
          Length = 370

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 138/354 (38%), Gaps = 7/354 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +         I F I+ S + L  F    + A +I   +WP+      + +       +I
Sbjct: 10  IPKILFTVLFISFFIIASFWILNPFIVGFIWAGMIVVATWPLLLIIEKRVKY-RWLSTMI 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             + ++ +F++P++ L    +     L+      +    P   WL+D+P  G    + W 
Sbjct: 69  MMILILLIFVIPIILLISSVIDNSAPLIELAKSPSNIQPPQLLWLNDVPMIGSSLYDTWH 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    +  I           ++    A   G     + L +  M++     +  G ++
Sbjct: 129 SILVSGGNALISKIQPYVGQAANWFFAQALNIGR----FALHLGVMLLFSGLLFLQGENV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L      L          +    IR+  LG+ + A+ + +V G    ++GVP    L
Sbjct: 185 VSWLRHFAIRLAGQRGDAAILLASMSIRAVALGVVLTALIQAIVGGIGLAVSGVPYATVL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI  I  +   G  +      ++L   G+      + +WG     +    LRP+L+   
Sbjct: 245 TVIMFICCLAQIGPLLVLIPSVLWLFWTGDTTWGIVMVIWGGAVATMDG-VLRPYLIKMG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             LP +    G++GG+ T+G++GLFIGPV++A+   +    I  + +    ++ 
Sbjct: 304 ADLPMVLILTGVIGGILTLGMIGLFIGPVVLAVAHSLLNAWINEVPKPNPDLTE 357


>gi|225376591|ref|ZP_03753812.1| hypothetical protein ROSEINA2194_02233 [Roseburia inulinivorans DSM
           16841]
 gi|225211474|gb|EEG93828.1| hypothetical protein ROSEINA2194_02233 [Roseburia inulinivorans DSM
           16841]
          Length = 379

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 113/338 (33%), Gaps = 2/338 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +    ++      L  L  +F P +  +I    + P+      + + +  + +VI  V
Sbjct: 14  NLLWAVFLLIFAFTLLPKLLIYFMPFVVGMIFAMIANPMVKFLEKRIKINRKYGSVIMIV 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-- 126
            V+ L ++            +   ++ +   + +         +    +     +T++  
Sbjct: 74  LVIGLVVLACYGAGTILAKGIGAFMAYLPTMSANAGTEFSEAINQLQQLLEKLPFTQNVD 133

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           LS   +      T   ++           F     D  + I+  ++A +FF  D   +  
Sbjct: 134 LSAIGTAIQDFLTNFVSSSDSATLGAIGEFAKSLPDMIVGIVVGLLAAYFFIADKDKLIT 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            ++      F A  ++I + +   +   F     I     ++L     +  V     +  
Sbjct: 194 GVEKHLSAGFLAKTERIYKQLVHAVGGYFKAQFKIMGVIYVILLIGLLILRVDFAWLIAF 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             A + M+P     +       + +    +      +   +   +V + ++P L+G  + 
Sbjct: 254 GIAFLDMLPVFGTGTVLCPWAVIKLFTGDYKMAVGMIVLYVVSLVVHQIVQPKLIGDSVG 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L    +   +  G R   ++G+ +   +  ++  +++ 
Sbjct: 314 LDPFASLLFMFIGYRVGSVVGMILAIPIGMILINLYEA 351


>gi|225017609|ref|ZP_03706801.1| hypothetical protein CLOSTMETH_01537 [Clostridium methylpentosum
           DSM 5476]
 gi|224949574|gb|EEG30783.1| hypothetical protein CLOSTMETH_01537 [Clostridium methylpentosum
           DSM 5476]
          Length = 360

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 105/343 (30%), Gaps = 3/343 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R        +   +I  I  +   +   +  P +    I F   PI     +K   +  F
Sbjct: 7   RRRSFIINAVYFILIFGIGFLLFKYAVPYVLPFIIGFAIAFMLKPIVRFLSTKLRLNHRF 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +    L  + L FL    +  + +L           I       +       S 
Sbjct: 67  CGAVVILLAYALLALVLWFLGARLVSALTDLFGNAEQYFDIYIAPLLEKINSFTVETISV 126

Query: 122 LWTKHLSHPQSLKILSETFLKT---NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           L          L       L++   +    +    +  G     + ++  F I++  F  
Sbjct: 127 LSPDLAPQANDLFQGVIQSLQSGIVSLSGNVVGSLANIGAKIPGFLVAFAFTIMSSIFIS 186

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D    +  L       +     ++       I        I+ I   + L   + + G+
Sbjct: 187 MDYNQFTSFLLRQLPKRWRDMAFEVKGYFVGTILRYLRAYLILMIITFVELSIGFGVIGI 246

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + + +  I A+   +P           I L +    +          I + +V   + P
Sbjct: 247 GNPIGVAAIIALCDALPVLGTGGIVIPWILLELLKGNYQLVIGLTVVYIIVTVVRNFIEP 306

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++G  + L  + T   +  G + +G+ G+ + P+ + +I  +
Sbjct: 307 KVIGQQLGLHPIVTLVSIYIGFKLIGVAGMILFPIFVQIIVSL 349


>gi|262195606|ref|YP_003266815.1| hypothetical protein Hoch_2385 [Haliangium ochraceum DSM 14365]
 gi|262078953|gb|ACY14922.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 542

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 5/227 (2%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L     L            I  +  F     +       +   +++   F   D   +  
Sbjct: 284 LETRIRLWTSQRIENLQTSIGDLVSFGQSLMIGLARSVFTFFLVMMVGAFILLDLEKLHG 343

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              SL    +   +  I++ + + +     G  II +  G++     ++  V   + L +
Sbjct: 344 FARSLIPMAYRDDFDLIAKGINRGLSGVIRGQLIICLVNGVLTYIGLFIFNVEYALVLAL 403

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGN-----IFNATCLFLWGAIELFIVDKTLRPFLV 301
           +  IM+++P    I  T   + + +        +  A   F W      +    L P ++
Sbjct: 404 VAGIMSVVPIFGSILSTIPVVIVALFSGEGGLDVARALAAFAWIVGIHLLEANVLDPKIM 463

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               ++  +   F L+ G    GL+G  +   + +++ V++      
Sbjct: 464 SSAARIHPVLVIFALIVGEHYFGLVGAILAVPVTSMVQVLFMYFRRK 510



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 7/102 (6%), Positives = 30/102 (29%), Gaps = 4/102 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLA 63
            +    W  +   ++ +   +    P + AL++ F   P+      +    +        
Sbjct: 98  RRLARLWGFLAFAVLVVVLTRHVILPFVFALLLAFILAPVVRYLSHRDDGSQRMPRWVAI 157

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           V+  +  + + +     +      +   + + +    +    
Sbjct: 158 VLCYLVFLGVLVSSAALVLPRFSDDASRIGANLPTLYERVND 199


>gi|325958067|ref|YP_004289533.1| hypothetical protein Metbo_0309 [Methanobacterium sp. AL-21]
 gi|325329499|gb|ADZ08561.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 377

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/355 (15%), Positives = 126/355 (35%), Gaps = 4/355 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   + N      ++I+ +++VS   L    + V+   I  +   P+        +    
Sbjct: 12  MINGLKNNITSAIFIIILLMVVSAVLLTPMLSMVVLGAIFAYAIRPLSRKLEPYTKFQ-- 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +V   V ++ + +  ++ L  +    +    S +V      +      +     +   
Sbjct: 70  --SVAIFVGMIIVILPLIIILLIFINTIISAAPSLIVFVKNLNLSSLNSTTLQNYPLIQQ 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  S   +  + S      + +  +  +   F        L +     + F+F RD
Sbjct: 128 NFPGSSSSQMINSVVNSIYVGMGDVVRSVTEYLLGFVQSIPTLLLQLFIFFASTFYFARD 187

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I + L+ +       Y+K + + +  V++S F G  + A   G++ G  +W+ G P 
Sbjct: 188 GDRIWEYLNYIIPDDRKHYFKTLLKEIDLVLKSIFFGHFVTAALTGIISGIGFWIMGYPY 247

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG +T    ++P               +    F      +   + L ++D  +RP +
Sbjct: 248 PLFLGTLTGFFQLMPIIGHWPTIVALALYDLVIGNFLRAAAVISLGVLLSLMDMYVRPKV 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G    +  L    G + G   +GL+G  IGP+++ +            ++   +
Sbjct: 308 AGKYADIHPLIFLLGFICGPLVLGLVGFIIGPLVLGVTYAAVVAYKKENQDKNPE 362


>gi|209551614|ref|YP_002283531.1| hypothetical protein Rleg2_4043 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537370|gb|ACI57305.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 385

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/335 (17%), Positives = 123/335 (36%), Gaps = 5/335 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +I      ++  +  F   V+ + I+    +PI+ +            A I  V  
Sbjct: 28  VRLGIIGLFAYWTIVLIAPFALIVIWSAILAVALFPIFQALCRLLGNRPVIAASIIVVFC 87

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L I PL  +        + L+ K+ +        P  + + P            ++  
Sbjct: 88  LVLIIAPLALVAVNFADTAQALIGKLRVGEFTLPSAPAAIREWPVVGERLHDAWNQIASD 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  I+            I    +  G   L + +SI+   I    F      ++  +  
Sbjct: 148 LAATIIKFQAPIREVTAVIVTKLASIGGGVLSFVVSIMLSGI----FLTRSARLAAAIQV 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   +        +R+    +R+   G+  +A  + L+ G  +   GVP+  AL  +  +
Sbjct: 204 LANRIAGEKGVGFARLAGATVRNVSRGVIGVAFLQTLLCGLCFAFFGVPARGALTFVIFM 263

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++  G  +    V I+     +   A        + + ++D  L+P L+   +  P  
Sbjct: 264 FCLMQLGPGLVLLPVIIWSWFSWSPAAAFAFTA-ITVPIMLIDNILKPVLMARGLSTPMP 322

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               G++GG  + GLLGLF+GPV++++   + K  
Sbjct: 323 VILIGVIGGTLSHGLLGLFLGPVVLSVFYELLKAW 357


>gi|224370368|ref|YP_002604532.1| putative sodium:dicarboxylate symporter permease [Desulfobacterium
           autotrophicum HRM2]
 gi|223693085|gb|ACN16368.1| putative sodium:dicarboxylate symporter permease [Desulfobacterium
           autotrophicum HRM2]
          Length = 358

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 120/324 (37%), Gaps = 6/324 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    +  + ++  M+  I  + L  +  F  P+  A +    + P++            
Sbjct: 1   MTTKDIVQKTVLLTMVFLISALFLNMIHEFLMPMFMASLFSAMASPVHQWLTRHLRGREN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +VI    V+ L IVPL  L    + +   +   V    Q  I  P   +     +   
Sbjct: 61  LASVIVIAGVVLLIIVPLSMLVGVVVTQAINVGQSVTPWVQSFINEPTTFTHYLEKIPYY 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E     +   + + I     L  N   F+    S    + ++     I M+  +F+F   
Sbjct: 121 EQ----ILPYRDVIIQKAGELVGNISSFLINSLSSATKMTMNALFGSIIMLYVMFYFLTM 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +  ++            + +      V R+T  G  II I +G + G A+ LAG+  
Sbjct: 177 GNVLLDRILYFLPLKDSDE-RALLLRFTSVTRATIKGTIIIGIVQGFICGLAFALAGIKG 235

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G I A+ ++IP     + +    I L++ G       L +   +    +D  LRP 
Sbjct: 236 PVFWGSIMAVTSIIPAVGTALVWGPALIILVLMGKFTGVIILAVLCGVVAGNLDNVLRPR 295

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTM 323
           LVG   K+  L   FG +GG+   
Sbjct: 296 LVGKDTKMHDLFVLFGTLGGITMF 319


>gi|329891165|ref|ZP_08269508.1| hypothetical protein BDIM_28760 [Brevundimonas diminuta ATCC 11568]
 gi|328846466|gb|EGF96030.1| hypothetical protein BDIM_28760 [Brevundimonas diminuta ATCC 11568]
          Length = 419

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/325 (12%), Positives = 88/325 (27%), Gaps = 21/325 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           LY+L+    P+  A+ +      +  +   +      F    A + V+  F+  +  +  
Sbjct: 59  LYWLRDILTPLAMAVFLMIMIDGVKRAIERRTPIPPRFAGAAALIVVVLGFLASIWIIVD 118

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                  +              + R +S + G      L                     
Sbjct: 119 GAAGFFTDASGVAGSIGPRIDQISRDVSALVGISDPPTLHDMIAGID------------- 165

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL-FPAYWKK 202
                +  + +              F++I L F         +++  +           +
Sbjct: 166 -----MRGWLTTTAFQVQGAATGAFFVMIYLGFLLASQAGFRKKMVGMFPERGPRQEALE 220

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V   +        +       V        G+ +      +  I+  IP       
Sbjct: 221 VFERVRGGVEGYLWVQAVTGAMICAVAWGLMRAVGLQNAEFWTFVIFIVGFIPVLGGAVA 280

Query: 263 --TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                   L+   + + A  LF+     LF+V   ++P + G    +  +     L    
Sbjct: 281 GCAPPLFALVQFESYWPALILFVGLQTLLFLVGNLVQPRMQGDNQNIDPIVVLLALAFWG 340

Query: 321 RTMGLLGLFIGPVLMALIAVIWKES 345
           +  G+ G+F+   L  +   I  E 
Sbjct: 341 KLWGVAGMFLSTPLAVMAMAILAEF 365


>gi|218283604|ref|ZP_03489576.1| hypothetical protein EUBIFOR_02168 [Eubacterium biforme DSM 3989]
 gi|218215753|gb|EEC89291.1| hypothetical protein EUBIFOR_02168 [Eubacterium biforme DSM 3989]
          Length = 368

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 101/326 (30%), Gaps = 5/326 (1%)

Query: 34  VLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           ++   ++ F    + +    +     +       +++ + +       +  +       +
Sbjct: 40  LVFGAMMAFVINLVMAKIEKRLNFMKKGKRATSLLLSLILIFLFVYFLITLVVPSLSEAI 99

Query: 90  KELVSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
             +V  +    ++          + P    +         +     I   +   TN +  
Sbjct: 100 GVIVQVLPKYFENAQKFLVDLFENNPQLANSINNLDIDWKNLIQSGINVISTGVTNVVGT 159

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                +       ++ L  IF I  L    R      +  +            +   I+ 
Sbjct: 160 TFNVVTVIVNSVFNFVLMFIFAIYVLLEKERFVQLYHRLTNLYLSETVKRRMDRCLNIIN 219

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +   +   G  I A   G +      +  +P    +G +  ++ +IP        A+ ++
Sbjct: 220 QTFSAFIGGQCIEATILGTLCTLGMIILRMPYPAMIGTLVGVINIIPMIGAYIGGAIGMF 279

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           ++   +   +    L+  I   I    + P +VG  + LP +     +V      G+ G+
Sbjct: 280 MVFTVSPIMSLWFLLYLCILQQIESNVIYPHVVGNSVGLPGIYVMMTVVIFGSLAGIPGM 339

Query: 329 FIGPVLMALIAVIWKESIMAIKENKE 354
           F+G   MA +  I    +   +  KE
Sbjct: 340 FLGIPTMASVYKIGVLYLNRKERLKE 365


>gi|170695146|ref|ZP_02886294.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
 gi|170139998|gb|EDT08178.1| protein of unknown function UPF0118 [Burkholderia graminis C4D1M]
          Length = 367

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 123/344 (35%), Gaps = 3/344 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   ++  + +        F   ++ ALI+  T +P+              +A +  +  
Sbjct: 20  IRAGLVAVLAIFCFRIFFPFLNLMIWALILAITLYPLQVGLRRTLAGKDGLIATLIILIA 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + + P   L       +   ++          P    ++  P        + +  +  
Sbjct: 80  FGVILAPTYLLGVAVAESIDNAIAVFKSGTFSIPPPADSVASWPVVGQRVYDFWQQAAVD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +   L       +    +    +  G   L +  ++I   I +        S  +    
Sbjct: 140 LTGLALKFAPQLKDTGLALLATVTGLGAGLLLFFAALIVAGILMAHGETGHKSAVEIASR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +          ++       IR+   G+  IA  + L++G A+ + G+P    L +   +
Sbjct: 200 ISGPENGPQIAEL---CTSTIRAVAQGVVGIAFIQMLLIGVAFVVMGIPGAGLLALAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++   A +    V I+++    +   T +F        + D  L+P L+G  + +P  
Sbjct: 257 LGIMQLPATLITIPVIIFVIATQGVSAITIVFSVYVFVAGLADNVLKPLLLGRGVAVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               G +GG+ T G++GLFIGPV++A+   ++   +      K+
Sbjct: 317 VVLIGALGGMVTGGVIGLFIGPVMLAVGYQLFWRWVKDQPRPKQ 360


>gi|117926744|ref|YP_867361.1| hypothetical protein Mmc1_3470 [Magnetococcus sp. MC-1]
 gi|117610500|gb|ABK45955.1| protein of unknown function UPF0118 [Magnetococcus sp. MC-1]
          Length = 362

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 107/343 (31%), Gaps = 12/343 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + +PQ +     +  + +  YFL    APV++AL I +    + +  +           
Sbjct: 10  RLRHPQVVGLLAALLTVWIVFYFLGSALAPVITALFIAYLLDSLVTPMV-HYHIPRPLAT 68

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +      +    + +L L      ++ ELV ++    Q      R L +   G+    L 
Sbjct: 69  LCVFSLFVFAMALLILGLVPIIGQQVTELVQEMPRITQVLKEQIRSLIESYSGIINPALV 128

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L    +    + T                     +   + +  +   +FFF  D   
Sbjct: 129 EDLLVDLMNKAKEASTQS--------LGLVGHVSQGLITTGVYLFLVPFLVFFFLLDKSE 180

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +   +L         +++ +     +     G     +  G +    + +      + 
Sbjct: 181 LRKSYSTLLPDE-QKLLEQVVQEANAGLGGYIRGKFWEMMLVGSLAFFVFTILEFRYALI 239

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +GV+T +  +IP             L     G   +        AI   +    + P ++
Sbjct: 240 MGVLTGMSVLIPFVGVAVVALPVAILGLAQWGFGMDGFKPLFAYAIIQVVDANLVAPLIL 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G   K+        ++      GLLG+F    L  L   I++ 
Sbjct: 300 GESAKIHPTTFIIAVLVFGSLWGLLGVFFAVPLAVLARSIYQA 342


>gi|257057886|ref|YP_003135718.1| putative permease [Saccharomonospora viridis DSM 43017]
 gi|256587758|gb|ACU98891.1| predicted permease [Saccharomonospora viridis DSM 43017]
          Length = 403

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 108/338 (31%), Gaps = 14/338 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             + +L     PV  AL++     P     +  +       A I  +  + +    L F+
Sbjct: 37  WLVGYLSFVVVPVAIALLLAALLAPAVQQLVKYRIPQP-VAAAIVLIGGLGIVGALLTFV 95

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                  +  L  KV         V  WL + P  +  +++     +    L+       
Sbjct: 96  ITQFTAGLPALQEKVNS---SLDRVNDWLINGPLHLRETQIVDFVNNAVDFLQENQAA-- 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  I   A        +    ++  ++ L FF   G  I   L             
Sbjct: 151 -------IADSALSTAGAVGEILTGLLLTLVVLVFFLAHGQQIWNFLIRGVPAPVRKRVD 203

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI- 260
              R     + S       +A+ +G+ +G   W+ GVP  + L  +  + A IP    + 
Sbjct: 204 LAGRRGFASLVSYVRATAAVAVVDGVGIGIGLWIVGVPLAIPLATLVFLGAFIPIIGAVV 263

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +     +  L+      A  +       + +    L+P L+G  ++L  L     +  G+
Sbjct: 264 TGAVAVLVALVTNGFVTALIVLAIVVGVMQLEGNVLQPLLLGRAVRLHPLAVILAITAGM 323

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            T G+ G  +   L+A++    K       E   +  +
Sbjct: 324 TTAGITGALLSVPLLAVLNSGIKSLAQEASEGDAEPEA 361


>gi|153001218|ref|YP_001366899.1| hypothetical protein Shew185_2702 [Shewanella baltica OS185]
 gi|151365836|gb|ABS08836.1| protein of unknown function UPF0118 [Shewanella baltica OS185]
          Length = 369

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  +     P        +         +A +
Sbjct: 12  RGFAVMAFVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       +    W+ +            + L+
Sbjct: 67  LLMGFIVLMGLWLASVVGSSVNEFSKQLPQYRVQLVEQFAWILNKLHSFNIQISKDQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     +Q+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKLHLALDDPDMRLKQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  G+++G    + GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATGVIVGVGLTIIGVDYAMLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPRFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|118581304|ref|YP_902554.1| hypothetical protein Ppro_2899 [Pelobacter propionicus DSM 2379]
 gi|118504014|gb|ABL00497.1| protein of unknown function UPF0118 [Pelobacter propionicus DSM
           2379]
          Length = 344

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 11/342 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++ +I  + Y L+   +  L + +I +   P+      +     T   V+   
Sbjct: 8   KLIAVILLLCLIAAAGYALQHTISCFLLSWVIAYLLDPLVMRIEKRT-LRRTRALVLLYA 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L I  +  +     +     V  + L  Q    +           W   L  ++ S
Sbjct: 67  ILGILSIFFMAIMVPKLTMGWDSFVEDLPLYIQKIKQI--------ALEWKIRLPDRYGS 118

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I   +    +           FG        +I+   I +FF      ++   L
Sbjct: 119 DEIQWLIDKVSNNIDSAAQKAGVMVYSFGSRIFFNIFNIVLSPILVFFMLYYKQTVIDTL 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S       A    I   V + I     G  I++I   L+   A  +  +   +  G+  
Sbjct: 179 KSWLPEERKAVIIDIGLEVNRSIGGYLRGQVIVSIIVALLSTVALLVLDIAHPIFCGIFA 238

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATC--LFLWGAIELFIVDKTLRPFLVGGPIK 306
              +++P    +  T  +++         A         A+  F+    ++P +    + 
Sbjct: 239 GAASVLPFIGVLIATLPALFFAWYQYQSIAILSQTGFAFALIYFLEGYIIKPLIFKESMN 298

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L  L T   ++     +G  G+ +   + A I + W   +  
Sbjct: 299 LNPLMTIVMVMALGELLGFWGIMLALPIAAAIKITWGHYLRG 340


>gi|160875889|ref|YP_001555205.1| hypothetical protein Sbal195_2778 [Shewanella baltica OS195]
 gi|160861411|gb|ABX49945.1| protein of unknown function UPF0118 [Shewanella baltica OS195]
 gi|315268080|gb|ADT94933.1| protein of unknown function UPF0118 [Shewanella baltica OS678]
          Length = 369

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  +     P        +         +A +
Sbjct: 12  RGFAVMAFVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       +    W+ +            + L+
Sbjct: 67  LLMGFIVLMGLWLASVVGSSVNEFSKQLPQYRVQLVEQFAWILNKLHSFNIQISKDQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     +Q+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKLHLALDDPDMRLKQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  G+++G    + GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATGVIVGVGLTIIGVDYAMLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|104783049|ref|YP_609547.1| PerM family permease [Pseudomonas entomophila L48]
 gi|95112036|emb|CAK16763.1| putative permease (PerM family) [Pseudomonas entomophila L48]
          Length = 356

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 114/350 (32%), Gaps = 12/350 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++F+    +  L G  APVL+ +++ F    + ++    K  S  
Sbjct: 9   MQRYFSDEEAVVLAVLLFLAFTVVLTLGGMLAPVLAGMVLAFLMQGLVNALERLKVPSR- 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +     M    V +L L      ++  L +++         +   L +    + + 
Sbjct: 68  LAVWLVFTLFMGALAVFMLVLVPLLWHQLITLFNELPGMLGKWQSLLLLLPERYPHLVSD 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E   + +   +                +   F+     + ++  + ++ + I +FFF +D
Sbjct: 128 EQVLRAIESVRGEI--------GKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I + +             ++   + + I +   G  I  +  G+    A+   G+  
Sbjct: 180 RELIGRWVSGYLP-RQRTLLNRVGDEMNRQIANYIRGKGIEILICGIATYIAFISLGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  +  ++P    +  T       L   G       L    AI   +    L P
Sbjct: 239 AALLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQFIYLMAVYAIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 299 LLFSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPRQ 348


>gi|328907725|gb|EGG27489.1| putative membrane protein [Propionibacterium sp. P08]
          Length = 430

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 103/332 (31%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 89  VLLTVAAAWLGLSFLHELSSVIAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATAAGTT 147

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    +  + +     + +L S +    +    +  W + +                
Sbjct: 148 VIVVLAAGVAGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQEVI--------- 198

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +          + II ++  + F   D   +  +L 
Sbjct: 199 --------TDKLKKIDPQQVMSVITSVASDTTSIVMMIIVILTGMIFMVMDTPQMHDRLR 250

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 251 MA--GNRKPDVVLALESFSSGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 308

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  +   F++   ++P   G  + L 
Sbjct: 309 LTNYIPNIGFIVGVIPPALLALFKDGWVAAVAVVVSYSALNFVIQSIIQPKFAGDAVGLT 368

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 369 PTMSFVSLLLWGWVFGALGTLIALPCSLLVKA 400


>gi|127512771|ref|YP_001093968.1| hypothetical protein Shew_1843 [Shewanella loihica PV-4]
 gi|126638066|gb|ABO23709.1| protein of unknown function UPF0118 [Shewanella loihica PV-4]
          Length = 366

 Score =  113 bits (284), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 94/308 (30%), Gaps = 10/308 (3%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           K   + T  A +  V  + + ++    L      +   LV+ +      G    +   + 
Sbjct: 61  KIGINRTTGASLVLVLFVGVMLLITFGLVPSIWRQGVALVTDLPTMLDKGFITLKGFVEQ 120

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                + E          +     +  L T  I  + +    +    L   +  I + + 
Sbjct: 121 YPQFLSVEQL-------DASVGELKKLLDTQHILDLGKQLIGYSASLLVLMVYAILVPLL 173

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +FFF +D   + +              +K+   + + I +   G  I  +  G      +
Sbjct: 174 VFFFLKDKDELVRGSKRFIPA-NRDLARKVWLEMNQQIFNYIRGKVIEIVIIGAASYIFF 232

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFI 291
            +  +     LGV+T    +IP       T     +     G       L L   I   +
Sbjct: 233 AIMDLRYAALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYLMLGYGIIQAL 292

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L P L    + L  +     ++      G+ G+F    L +L+  +      A K 
Sbjct: 293 DGNLLVPILFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAVVNAWPKADKP 352

Query: 352 NKEKISSN 359
             EK  + 
Sbjct: 353 ELEKSKTE 360


>gi|171464071|ref|YP_001798184.1| protein of unknown function UPF0118 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193609|gb|ACB44570.1| protein of unknown function UPF0118 [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 329

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 104/328 (31%), Gaps = 6/328 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +   F P L+A I+ +   P+   F   +       A ++ +  +CL    L  L     
Sbjct: 1   MAEIFTPFLTAFILAYALHPVCLWFEQHR-LPRALAAAVSMLIGLCLVFFILSLLISLLK 59

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  + +++     +      WL      +  +  W                    + +
Sbjct: 60  YEIPLIKAQLPDWIANTQA---WLGPKLSELHINLDWGTLRESATQKITEHINDNADSLM 116

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                     G   +   ++ + +I  +F+   D       +  +           ++  
Sbjct: 117 SSTISTVLMSGSSVIAGFVNAVLIIFVMFYLLMDWTYFFGLVKGIVPVRAQETVHHLAMH 176

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              ++     GM I+     +   +     GV    ALG  TA+M +IP         ++
Sbjct: 177 TDGLLSQYLRGMLIVISIMAIFYSAGLSFIGVKGAAALGAFTALMIVIPYIGITIGLTLA 236

Query: 267 IYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                   G       +F+   I  F+    L P LVG  I L  +   F L+   +  G
Sbjct: 237 TLSALLQFGPGTEIIGVFILFGIGQFLESFFLTPRLVGERIGLHPVAVLFSLLCFGKLFG 296

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+ +   + A+  V+ K       ++
Sbjct: 297 FFGVLLALPISAVSLVLVKYLWSIYIQS 324


>gi|94496068|ref|ZP_01302647.1| hypothetical protein SKA58_15837 [Sphingomonas sp. SKA58]
 gi|94424760|gb|EAT09782.1| hypothetical protein SKA58_15837 [Sphingomonas sp. SKA58]
          Length = 360

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 101/347 (29%), Gaps = 20/347 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +    W  + I +     L      +L A+++                    +   I  +
Sbjct: 26  KRAGVWFGLAIAIALTALLAQPLMLILGAMVLATMMDGGSRLLGRILPIGRGWRLTIVLL 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S +   +            + + + + V           + L           L  + +S
Sbjct: 86  SAVAFLVWTFYLTGSSLAAQAQAMRTIVEAQVTRIGGWMQQLGITATPSDLKGLAQQAMS 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                    +      +        M++   F   +     + +
Sbjct: 146 SM--------------------GRVTAALGTAMGAITGGAMMLVLAIFLATEPKLYERGV 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +      A +  I+  +   +R    G  I    EG+      W+ GVP    LG++T
Sbjct: 186 AWMLPMDKRAQFYTIADKMGWTLRRLMFGRIIGMSVEGVGTWLLLWVFGVPMAGLLGILT 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A +P    I    + + +   G +           +   +    + P +    + L 
Sbjct: 246 GLLAFLPNIGAIISGVLIVLVGFSGGMDTGLYAVGVYLVVQIVDGYLIVPMVAKRAVDLA 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                   +      G++GLF+   ++A+I V  +E   A + +++K
Sbjct: 306 PALVLAAQILFGALFGIIGLFLADPIVAMIKVYLEERSKASRSDRDK 352


>gi|238916986|ref|YP_002930503.1| putative permease [Eubacterium eligens ATCC 27750]
 gi|238872346|gb|ACR72056.1| putative permease [Eubacterium eligens ATCC 27750]
          Length = 416

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 93/342 (27%), Gaps = 23/342 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKE--------------ESSTFLAVIATVSVMCLFIV 76
             P +    + +   PI + F +                  S+        +  +     
Sbjct: 47  LMPFIIGGALAYVICPICNFFDNIYNKVFKFIKNEKKKKSLSNNLSVFTGLLIAILFIYF 106

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM--WASELWTKHLSHPQSLK 134
            ++ +    +  +  L+  +       I   +   +    +  ++  +  K  +      
Sbjct: 107 MIIVIIPNLVNSVVRLIQIIPDNVNKVIDFVQKFLNENETLMKYSENIIDKTYTFINDWL 166

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                         +        ++  +  +  I     L    +        + S+ + 
Sbjct: 167 GNEFLGYAQGIATGVSTGVVNIIVVLFNVLIGFIVAAYLLTARKKLAKQGEMVVYSIFKK 226

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH-------VALGVI 247
              A   +  +   KV      G  + A    L+   +  +  + +        + +  I
Sbjct: 227 ERAASVMEEIKYTDKVFSGFVNGKILDAFVIALICFISLKIFTICNPGKEMMSEILIAFI 286

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I  +IP         +   L +  N        ++  I   I    + P ++G    +
Sbjct: 287 VGIFNVIPFFGWYIAWFIGALLCLIVNPAQCLFFVIFNFILQQIDGNIIGPKILGNTTGI 346

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                 F ++      G  G+ +G  + A+I  + K+ +   
Sbjct: 347 SSFWVLFAILLFGDIWGFAGMLLGVPIFAVIYHLIKKWVFKR 388


>gi|88854466|ref|ZP_01129133.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
 gi|88816274|gb|EAR26129.1| putative integral membrane protein [marine actinobacterium
           PHSC20C1]
          Length = 383

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 108/342 (31%), Gaps = 16/342 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + +  L  LK    PVL ALI+   + P+      ++         I  +  + +    +
Sbjct: 48  VTIFGLTQLKLVVIPVLIALILAAAASPLVVWM-RRRGVGRMLSTWITLLGGILVLGGLV 106

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             + +    +  EL +                          E WT  L    S      
Sbjct: 107 TAIVFAVRDQWSELATSATDGFDQLKEFALNGPLPIDQSALDEAWTAILDFFTS------ 160

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                         A +           ++  ++ LFFF +DG +I +        +   
Sbjct: 161 --------ASFGLGAIQGVSAAAQVVTGVLLGVVILFFFLKDGDNIWEFFLRPMHGVRRE 212

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +I R   + +     G  I+A  + + +G+   +  VP  + L VI  + A IP   
Sbjct: 213 RGHRIGRTAVRTLGGYVRGTAIVAAVDAVGIGAGLLILQVPLALPLAVIVFLGAFIPLVG 272

Query: 259 P-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             ++    ++  L+      A  +     +   +    L+P ++   + +  L     L 
Sbjct: 273 ATVAGILAALIALVTNGWVVALIVLGIVVLVNQLEGNLLQPVVMAQSLSIHPLVILVALT 332

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G    G++G  +   + A+   I K    +     +    +
Sbjct: 333 AGTILGGIVGAVLSVPIAAVGWSIIKTWNESGNVPDDVRDES 374


>gi|302877845|ref|YP_003846409.1| hypothetical protein Galf_0603 [Gallionella capsiferriformans ES-2]
 gi|302580634|gb|ADL54645.1| protein of unknown function UPF0118 [Gallionella capsiferriformans
           ES-2]
          Length = 352

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 129/346 (37%), Gaps = 8/346 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   + +   L+ LY+L     P ++A I+ +   P+    +   +       V+  V 
Sbjct: 8   ALQWLLFVVPALLLLYWLSPILTPFVAAAILAYICNPLVRRLV-VLKLPRAAAVVMVMVF 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +M LF   LL +      E+   + ++    +           +P          +  S 
Sbjct: 67  LMLLFAGLLLIMLPLLEKEISLFMVRLPDLIEMLRASL-----LPKLQLLFGAELQWDST 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +LS         + +  + S  G   L+  ++++ + +A+F+F RDG  +S + D
Sbjct: 122 LLKNWLLSHWQSAGGVAEKLLPWLSSSGGKILNVAMNLLLIPVAMFYFLRDGGLMSAKFD 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L    + A   +IS  V +V+     G   + +          W  G+   + +G++  
Sbjct: 182 ALIPRHWHAKVCEISAEVDRVLAEFLRGQISVMLLMSAFYSLVLWAVGLEFALPIGIVAG 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++  IP    +    ++    +     + +   ++        +    + P+LVG  I L
Sbjct: 242 MLVFIPYLGMVIGLLLATLAAVMQFSELSSVVWVWGVFGAGQMLEGTLVTPWLVGERIGL 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L   F L+   +  G  G+ +   + A++ V  +   +    ++
Sbjct: 302 HPLAVIFALLAFGQLFGFFGVLLALPMSAILLVGLRHGTIWYLSSR 347


>gi|307325861|ref|ZP_07605061.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
 gi|306888649|gb|EFN19635.1| protein of unknown function UPF0118 [Streptomyces violaceusniger Tu
           4113]
          Length = 370

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 97/345 (28%), Gaps = 15/345 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +++    L   +     V  AL+      P+                 +A  
Sbjct: 39  RLMVIGVAVYLAFSVLGQFELVAVAVFLALVATALLRPLADLLAR--VLPRPLAVALAVF 96

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  L  +      E   LV ++                                
Sbjct: 97  GTLFVVLGLLALVGNAAAGEAGRLVGELRGGISRIERWLE------------GPPFHVRR 144

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S      T   +     +   A       ++   ++   +    FF   G  + +  
Sbjct: 145 GVLSGTHDKVTSFVSRHRATLISRALSSAGRVVEAGTALFLALFCSIFFIHSGDRMWRWF 204

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    + W + +R           G+ ++A     ++G A  L  VP  + L ++ 
Sbjct: 205 RGQLPERARSPWDRAARAAWTTFAGYTRGIIVVAASNAALVGIALSLLRVPLALPLTLLV 264

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                +P    PI+    ++  L       A  + L            L P ++   ++L
Sbjct: 265 FFATFVPLIGSPIALAVATVVALAGRGPAIAAVVLLLIVAVGQFEGHVLHPLVMSWAVRL 324

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +     ++ G    G++G  +   ++++   + +       + 
Sbjct: 325 HPVVVAISVIAGSIVAGVIGAIVAVPMVSVAWSVTRALRRRPPDE 369


>gi|237742379|ref|ZP_04572860.1| permease [Fusobacterium sp. 4_1_13]
 gi|229430027|gb|EEO40239.1| permease [Fusobacterium sp. 4_1_13]
          Length = 344

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 115/323 (35%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++   V+ +F +  L +    + 
Sbjct: 19  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIAFVVLIFAILSLIVIPEIIS 78

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L +     ++    + + L +         +    ++   +  I +        + 
Sbjct: 79  SLKVLNNIYPYISEKATTMGKNLVNYLAEKNIYTVNMDEVNSYFTNFIANNVTNIRKIVS 138

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      + + F +  L+ +   + L        ++   +  +       Y     ++ 
Sbjct: 139 ALFGSLVDWTIGFTNLFLAFVLAFLILLDKKHLTKTLENIIIIIFGVKNTPYIMNKLKLS 198

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            ++  +   G  I++   GL +     + G P      V+  +  MIP    I    ++ 
Sbjct: 199 KEIFLNYVSGKLIVSAIVGLCVYIVLLVTGTPYAALSAVLLGVGNMIPYVGSIIGGIIAF 258

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +   I   +    + P ++G  + L        ++      G++G
Sbjct: 259 FLILLVAPIKTIVLLIAITISQLVDGFIVGPKIIGNKVGLNTFWVMVSMIIFGNLFGIVG 318

Query: 328 LFIGPVLMALIAVIWKESIMAIK 350
           +F+G  ++++I + + + + A +
Sbjct: 319 MFLGTPILSIIKLFYVDLLKAKQ 341


>gi|24379535|ref|NP_721490.1| putative permease [Streptococcus mutans UA159]
 gi|290580464|ref|YP_003484856.1| putative permease [Streptococcus mutans NN2025]
 gi|24377477|gb|AAN58796.1|AE014947_8 putative permease [Streptococcus mutans UA159]
 gi|254997363|dbj|BAH87964.1| putative permease [Streptococcus mutans NN2025]
          Length = 374

 Score =  113 bits (284), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 117/345 (33%), Gaps = 8/345 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSW---PIYSSFIS---KKEESSTFLAVIATVSVMC 72
           I+   L  L  F        I+         +Y   I      +       V+A  + + 
Sbjct: 31  ILNTFLSALSPFLTGAAIGYIVNIVMSAYERLYDKLIKSQSLLKAKRPLTMVLAYATFVL 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +    +  +K L+S      Q+ I   +    +   + +    T+  S   +
Sbjct: 91  VVVLIFTIVLPDLIASLKSLLSINPKDIQNIINEVQHNKWVSKMLASFGGDTQISSLISN 150

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                 +   +   + +    +      +   +SIIF +  L    + G   +  +D+  
Sbjct: 151 YSRQILSQFLSVLTNVLTS-VTSIASALISIFVSIIFSMYVLANKEKLGRQFNLLIDTYL 209

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +      +  I+       F+G T+ A+  G +      L  +P    +G++ A  A
Sbjct: 210 G-KYSGTVHYLVGILHSRFHGFFVGQTLEAMILGTLTAIGMMLFNLPYAATIGILIAFTA 268

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP         +   L++  +   A    ++  +        + P +VG  I LP +  
Sbjct: 269 LIPVVGAYIGVTIGTILILTQSFSQAVVFLVFVILLQQFEGNVIYPRVVGSSIGLPSMWV 328

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              +  G    GL+G+ +   ++A +  I K+ +   +  K    
Sbjct: 329 LLAITIGGALAGLVGMLMAVPILASLYQIIKDHVYQKQTQKASQE 373


>gi|52840967|ref|YP_094766.1| transmembrane permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|54296757|ref|YP_123126.1| hypothetical protein lpp0796 [Legionella pneumophila str. Paris]
 gi|52628078|gb|AAU26819.1| transmembrane permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|53750542|emb|CAH11944.1| hypothetical protein lpp0796 [Legionella pneumophila str. Paris]
          Length = 350

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 97/337 (28%), Positives = 167/337 (49%), Gaps = 1/337 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   + + I++ SLY +  F   ++ A II   ++P+Y+ +           A + T
Sbjct: 6   KELISIGLTVSIVIFSLYIVHKFIPSMIWAAIIVIATYPLYTRWRKLFGNKHNTSAFLFT 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  LF++PL +L    + E +  ++ +   N+ G   P +  +IP        +    
Sbjct: 66  TLMGLLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      + L          +  + G+        + F ++ LFFFYRDG  +  Q
Sbjct: 126 IGKPGNIKEFLSNLHVTLTPT-SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQ 184

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  +GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G I
Sbjct: 185 IQHIGEYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGVCYALVGFPAPTLTGFI 244

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           TA+ AMIP   P+ F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+L
Sbjct: 245 TALAAMIPFVVPVVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQL 304

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           PFL   FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 305 PFLAVLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 341


>gi|303240190|ref|ZP_07326710.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302592281|gb|EFL62009.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 365

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/351 (18%), Positives = 127/351 (36%), Gaps = 18/351 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++  +I+F+     +FL  F       FAP+L++LI+ +   P+      K     T  
Sbjct: 14  TLLTLLIIFMFGKIDFFLLPFRKLVAAIFAPILASLILYYILRPLV-RLFQKFRIPKTAS 72

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            VI  +  + L I     +    + +  +L+S++                      A   
Sbjct: 73  IVITFIVAIILIIAIGTNIGVIVVEQFDDLMSEL----------YTNFDISYFSRDAFMN 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                  P          +  + ++    F         +    I+ +   LF+F +D  
Sbjct: 123 NKIFEYLPIDKLEQKGMEILDSLMNNSKNFFMGILSTVTNISTIILMIPFILFYFLKDDE 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+ L         A  +KI   + K + S  +G   +A+ +G+++   Y + G+   +
Sbjct: 183 EFSKNLIEHLPKKHVANVEKILYDIDKALSSYLVGQMTVAMADGILMFIGYLIIGIKYPL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L +   I A+IP   P      +I++ +  N   A  +FL   I   I    + P ++ 
Sbjct: 243 ILSIFVVITAIIPFFGPYIGIIPAIFVGLTMNPLMAVKVFLLETIVQQIDGNFIAPQIMR 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + +  +     L+ G    G +GL I   + A ++V  K      K  K
Sbjct: 303 QKLNVHPVTVILLLMIGSALYGFVGLLIVVPVYAALSVTIKNVYRIYKVEK 353


>gi|242373168|ref|ZP_04818742.1| permease [Staphylococcus epidermidis M23864:W1]
 gi|242349119|gb|EES40720.1| permease [Staphylococcus epidermidis M23864:W1]
          Length = 361

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 107/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +              +   + ++ +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNLLEKW-GFPRWASILTIFIGLIAIIAIVVSFIAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+ +     +    +  +          S      L    + +I        +G
Sbjct: 95  ISNINNLIKQTPALQKEAEHLINF----------SLKQMDKLPDDVTHRINKAVRSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   +  +   F+     +I +   L +  +D       +    +     +   + +
Sbjct: 145 VTSILSNSVTYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLK 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G++L   Y + G+P    L +   +  +IP   P    A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLGPGLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I         + +   +   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDGPTTFIWVCIVTLVAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLILIAVPLYAVLKTLVSNIFKYRQRIIDKANSN 358


>gi|332185811|ref|ZP_08387558.1| hypothetical protein SUS17_883 [Sphingomonas sp. S17]
 gi|332014169|gb|EGI56227.1| hypothetical protein SUS17_883 [Sphingomonas sp. S17]
          Length = 409

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 109/332 (32%), Gaps = 13/332 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            +  +  +L     FF P+ +AL+I     PI      ++  S    A++  +  + +  
Sbjct: 56  FILALPFALREGAEFFLPLTTALVIAIALVPILEWLERRRVPS-ALAALMCVLLFLIVAN 114

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  +        + L S++     +  P+    S++                 + +  
Sbjct: 115 IALAAIIVPATDFFRLLPSRIGRIQDNLAPLLDLYSNL---------ERYVNKALRQVAS 165

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ-QLDSLGEH 194
                 +T  +                  +  +F ++ +FF       + +  +      
Sbjct: 166 TPIRQPQTAAVSPPSSILELAATSAPGLIVQFLFGVLVVFFVLSGWTRMRRETIRGRTSF 225

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++ + V   + +    +TII +  G  +  A  L G+P  +  G I A++  I
Sbjct: 226 DGAMATARVIQEVVDDVSAYLGTITIINLALGGAVAGALSLFGMPYPLMWGGIVALLNYI 285

Query: 255 PGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P   P+    +     L+   +I+ A            +    + P +VG  + +  +  
Sbjct: 286 PYFGPVIGALLLAVGGLMTFNDIWVALAPPAIMYGMHLVEANLITPLIVGHRLTISPVLI 345

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L       G +G  +   L+ ++  + K 
Sbjct: 346 LVSLSFWGWVWGTVGALLAVPLLIILQTVLKA 377


>gi|260494347|ref|ZP_05814478.1| permease [Fusobacterium sp. 3_1_33]
 gi|260198493|gb|EEW96009.1| permease [Fusobacterium sp. 3_1_33]
          Length = 364

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/328 (13%), Positives = 120/328 (36%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++ + V+ +FI+  L +    + 
Sbjct: 37  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIIFVILVFIILSLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  I + + +++         +    +++  +  I + T   T    
Sbjct: 97  SLKVLNDIYPYISEKAITIGKNIANYLAEKNIYTINMDEVNNYFTNFISNNTTNITKLAS 156

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      + + F +  L+ +   + L        ++   +  +       Y      + 
Sbjct: 157 SLLGSLVDWTIGFTNLFLAFVLAFLILLDKKHLIKTLENIIKIIFGVKNTPYIMNKLSLS 216

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             +      G  I++   GL +     + G P      ++  I  MIP    I    ++ 
Sbjct: 217 KNIFLGYVSGKIIVSAIVGLCVYVILLVTGTPYAALSAILLGIGNMIPYVGSIIGGIIAF 276

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +  AI   +    + P ++G  + L        ++      G++G
Sbjct: 277 FLILLVAPIKTIILLVAIAISQLVDGFIVGPKIIGNKVGLNTFWVIVSMIIFGNLFGIVG 336

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEK 355
           +F+G  +M+++ + + + +   ++  E+
Sbjct: 337 MFLGAPIMSILKLFYIDLLKKAEQGGEQ 364


>gi|86159816|ref|YP_466601.1| hypothetical protein Adeh_3397 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85776327|gb|ABC83164.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 412

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/379 (10%), Positives = 114/379 (30%), Gaps = 24/379 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
                    +  ++  ++L  +        P   A +  +   P+ +    ++       
Sbjct: 9   RRPRTRLYALTALLWAMMLGVVVMAWPVLLPFTLAGLAAYVIDPVIAGIARQRVAGRPVP 68

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP------------- 105
                +I    +  L  +  +        E    + ++        P             
Sbjct: 69  RVLAVLIVYAVLGALVWIAAVSFVPAVYREAIRALLELRDFLASITPDRVQEWTRAIDAF 128

Query: 106 ------VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                          G       ++  L+   +  +   T      +  +  F+      
Sbjct: 129 LQRYGIPLDVTPSAGGLDTPGGRFSVDLAAGMASALHDLTLALRGRVSDVVAFSRAILAG 188

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +     ++ + +   F   D   I +  +++    + A  +++   +   +     G  
Sbjct: 189 TVQTLFFVVLLFMLTAFISMDAPRILRWFETVVPSHWRADLRRLRTGIDAGLSGVVRGQL 248

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNA 278
            I +  G++      +  VP   ALG +  ++ ++P    I     + +  L  G    A
Sbjct: 249 TIMVVNGILTLVGLLVLKVPFAFALGFLAFVLYIVPIFGTILSSVPIVLLALTGGGPTKA 308

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                W  +   +    L P ++G   ++  +     LV G R+ G++G  +   + +++
Sbjct: 309 LLALGWITVVHALEAYVLNPKIMGDAARIHPVLIVLALVVGERSFGIVGALLAVPVASVV 368

Query: 339 AVIWKESIMAIKENKEKIS 357
             +++       E  E+ +
Sbjct: 369 VAVFRFLHRKQVELDERAA 387


>gi|332179279|gb|AEE14968.1| protein of unknown function UPF0118 [Thermodesulfobium narugense
           DSM 14796]
          Length = 341

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/330 (15%), Positives = 114/330 (34%), Gaps = 8/330 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  I + L+  K F   VL ALI      P       K +    F ++I   SV+   +
Sbjct: 13  LLIAITIFLFVFKDFIIQVLLALIFAIVLSPPVDFLEKK-KIPRFFGSLIVFFSVISFMV 71

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L        E+++LV+      ++     +             +W   +        
Sbjct: 72  IIYLLTAPILNFEIQKLVASFPEYLKNFDDAFQNFLANLQINPGHYIWLNLILQKLRDHF 131

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     I  +           ++  +S +   I   FF +D   +++ +  +    
Sbjct: 132 QEW-------IGNVLNVVGASTFDLINKAISWLVFPILTLFFMKDLPILAKGILEIFPQS 184

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   IR+   G  I+++  G + G   +  G+   + LG + AI+  IP
Sbjct: 185 KRTLITEIGSCLTHGIRAYVKGQLILSVIIGFLTGLGLFFLGIEYFLLLGFLAAILEFIP 244

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+  +  ++ + I  +   A  + ++  +   +    + P ++   I +P       
Sbjct: 245 YLGPMLASIPALIISIAISPLKAFIVLIFYIVLHQLEGVIIAPNIMSKSIDVPPSLVIIV 304

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L        + G+ +   L A+   +++  
Sbjct: 305 LTIAAALGSIPGMLLSIPLTAISKSLYEYW 334


>gi|302532542|ref|ZP_07284884.1| integral membrane protein [Streptomyces sp. C]
 gi|302441437|gb|EFL13253.1| integral membrane protein [Streptomyces sp. C]
          Length = 367

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/320 (13%), Positives = 103/320 (32%), Gaps = 14/320 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++   +L  L  +     P++ AL++   +WP+ +    ++       A + TV
Sbjct: 19  ELLVVLVMAAAVLWVLGRMWSVIWPLIVALLLTTLTWPLAAFL-RRRGWPPALAASVVTV 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      +  +      +  ELV  V    Q                WA+       +
Sbjct: 78  LFLLAAAGIVALIAVPVASQSGELVDGVAAGIQQLRE------------WAAGPPLNIGN 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +      N +       +       +  ++ +  +  +FFF +DG      L
Sbjct: 126 DQITGAFDAAVARLQNSVGSAVSTVATGVSTVFNGLVTAVLAVFLMFFFLKDGPRFLPWL 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++    + + S       + + + + +G   W+ GVP  + L V+T
Sbjct: 186 TRQLPGRLGTDVPVVAARGWQTLGSFVRSQAFVGLLDAVFIGLGLWIVGVPLVLPLAVLT 245

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + +A  +         +     +P +    + L
Sbjct: 246 FVSAFVPIVGALFAGLVAVLIALVSNGLTDALIVLAIIVAVQQLEGNVFQPMIQSRGLGL 305

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
                   +  G    G++G
Sbjct: 306 HAAVVLLAVTLGGSLAGVVG 325


>gi|297567386|ref|YP_003686358.1| hypothetical protein Mesil_3012 [Meiothermus silvanus DSM 9946]
 gi|296851835|gb|ADH64850.1| protein of unknown function UPF0118 [Meiothermus silvanus DSM 9946]
          Length = 369

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 107/339 (31%), Gaps = 8/339 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L   +     VL A++  + + PI   F  ++   +  + V+    ++   +     L
Sbjct: 32  WALAMARSAIVTVLIAVVFSYITSPIVRWFERRRLSRALGVVVVFVGFLLF--VALASVL 89

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 ++   ++ +       +   + L    G +   +     L+   S         
Sbjct: 90  LANMAGQLAGFLTGLPNLLAPLLDWAQALPGRFGQIELPQPVRDALAQASSSIQTLLQGF 149

Query: 142 KTNGIDFI------PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
             + +  +            F    +     ++  +    +   D   I+  L       
Sbjct: 150 TQSLLRLLQALLAQGGNLIGFFSNLVGGIFQLLTALTISIYLLYDLPKIAHTLLKAIPEP 209

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     ++S+   +   S   G  ++A   G ++     + GVP   +LG +T I   IP
Sbjct: 210 YQPMALEVSQKADRAFGSFVRGQVLVATISGTIVAVGLSIVGVPQAASLGFLTFIFNFIP 269

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               I     +I L +               +   +      PF++   + +  +    G
Sbjct: 270 FVGVIISAIPAILLALPLGWLKLALTVGVLYLTNQLEGNVYGPFVMRRAVSIHPVTGIIG 329

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           ++      G +G+     ++A   +++ +     +  +E
Sbjct: 330 ILIASSLFGFIGVLFSTPMLAFFKILYVDYYQKSRFYRE 368


>gi|170748680|ref|YP_001754940.1| hypothetical protein Mrad2831_2262 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170655202|gb|ACB24257.1| protein of unknown function UPF0118 [Methylobacterium radiotolerans
           JCM 2831]
          Length = 381

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/353 (11%), Positives = 101/353 (28%), Gaps = 9/353 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +     L   +   G    + + +++G     +                 IA+V+V 
Sbjct: 27  IAVVCFVAALALAWMSAGTLLLIFAGVLLGVFLDGLTRGLGRVLPLPRGVRLSIASVAVA 86

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM---------WASEL 122
              I    +     + + ++L + +                    +              
Sbjct: 87  VAVIGFGSYGGATIVQQGRDLGTTIKNQAGTVTGWLSERGIDVPSLAPQGGGKDGSTDSG 146

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +      +  +L  +    +    +   A+   +   D   +++ +      F  D  
Sbjct: 147 QREGGLGGLANGLLKGSSSIVSDAGSVLGPAAAVILGLFDALGNVLVIAFLGLAFAADPK 206

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +                  ++     + +R    G  II     L   +     G+   +
Sbjct: 207 AYRDGAVRFVPPAKRWRASQVLDGAGETLRHWLFGQLIIMAVIFLCTWAGLAFLGIGGAL 266

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG+   ++A +P   P+    V +   +                   +    L PF+  
Sbjct: 267 ILGLQAGLLAFVPTVGPLVAGLVIVLAALASGTKAVIGAIGVYLAVQCLESYGLTPFIQK 326

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             + +P    F G +      GL G+ +   LMA+I V+ ++  +    +++ 
Sbjct: 327 RALDIPPATIFAGQLILGVIFGLWGIALALPLMAVIKVLLEQLYVEDTLHEQP 379


>gi|167630331|ref|YP_001680830.1| hypothetical protein HM1_2263 [Heliobacterium modesticaldum Ice1]
 gi|167593071|gb|ABZ84819.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 360

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 111/335 (33%), Gaps = 1/335 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + +     L  +  P L   +I     P+      K   S      +  +  + L  V L
Sbjct: 27  LTVEVFSRLGVYLLPFLLGAMIALLIEPVVEFLTKKTGLSRGLTTFVTLLLFLGLVSVSL 86

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +    ++EM  + S +            W   +           +  +  + +     
Sbjct: 87  VVIISRLVVEMVTIASSLPSPQFLTNAFTEWTKAVAPYYELIHSSPEIYTTVERIAGEGV 146

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +K   +     +          +   + F ++A +FF RD  +I Q +  +       
Sbjct: 147 VAVKNMAVSG-SNYLLDMITSLPSFFTILAFSLVASYFFSRDKGAILQLVYKVVPDDRAV 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +++   + +          I+    GL+     +L        +G++T IM ++P   
Sbjct: 206 QVRQVIVELGEAFVGFVRAQVILVSITGLLTIIGLYLLDNEYAFTIGILTGIMDLLPILG 265

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P       I   +    F A          L +  + + P +V   I L  L T   L  
Sbjct: 266 PGLVFLPWIIWELLSGQFPAAANLSILYGILVLNRQFIEPKVVADSIGLHPLVTLTALYV 325

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G++  G++G+ IGP ++ L+  + +  +      +
Sbjct: 326 GLKAFGVIGVIIGPTIVLLLLSMHRAGVFKNFRTR 360


>gi|24374396|ref|NP_718439.1| permease PerM, putative [Shewanella oneidensis MR-1]
 gi|24348962|gb|AAN55883.1|AE015725_5 permease PerM, putative [Shewanella oneidensis MR-1]
          Length = 361

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 119/352 (33%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  + + LYF  G  AP+L AL++ F      +  + K   + T 
Sbjct: 10  QERFSDPQAVTLLAILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQML-KLGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +  + + ++    L      +   L++ +      G+   + L+       + E
Sbjct: 69  AASLVLIIFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTVQGLATQYPQFISVE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++  + L               I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QLNLMVAELKKLLDTQHVLD-------IAKQLIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                +K+   + + I +   G  I  +  G+     +   G+   
Sbjct: 182 DQLISGSKRFFPT-NRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYILFAFMGLSYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T   + +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPIMLVAFFQWGFSSEFGYLMLGYGIIQALDGNVLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G+LG+F    L +L+  +         E
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGVLGVFFAIPLASLVKAVINAWPKTEIE 352


>gi|256371624|ref|YP_003109448.1| protein of unknown function UPF0118 [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008208|gb|ACU53775.1| protein of unknown function UPF0118 [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 422

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/332 (11%), Positives = 103/332 (31%), Gaps = 13/332 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + + +   L+     ++ A ++     PI S  + +         ++  V V+   + 
Sbjct: 22  LGVAVWAFAVLRHLELEIVVAGVLALVIEPIVSRLV-RLGLPRVVAVLVTAVLVLAALVG 80

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
                    +   + L+  +             +  +   +                 + 
Sbjct: 81  LAAAFVVPLVNAGQRLLGDLPGLLSRLRAHRAAIEALLVRLHLQH------------ALD 128

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  +        A       +    ++  +     F   +       L +  +   
Sbjct: 129 VGAQSIAHAAQLAVTPALSVASGAVGSLATLAVIGTLAVFLSLEAPKAIAWLVAQLDASR 188

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +   V   +    LG    ++  GLV+G  Y + G+P    +G+   ++ ++P 
Sbjct: 189 RPRVEGVLHDVAIAVAGYVLGNLATSVVAGLVIGVTYAILGLPDPALIGLWVGLVDLLPL 248

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              ++    ++ L + G   +   + +       I +  L P +    ++L  L     +
Sbjct: 249 VGGLAGGVPAVALALVGGPEDVVIVLIVVLAYQQIENHVLNPVVYAKTVRLSPLWVLVAI 308

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + G +   L G  I   + + I VI +E++  
Sbjct: 309 LVGAQAASLPGALIAIPIASAIQVIARETLRD 340


>gi|326801119|ref|YP_004318938.1| hypothetical protein Sph21_3732 [Sphingobacterium sp. 21]
 gi|326551883|gb|ADZ80268.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 351

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 42/342 (12%), Positives = 99/342 (28%), Gaps = 21/342 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +    ++ I++  L         V +  ++      + +    K + S  +  +     
Sbjct: 24  TVGIISLLVIVIFILKAAFNVLLMVFAGSLMAIYFHGLANLLERKIKLSHGWCLLTGIFI 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L  V   FL     +++ E+   +    +                            
Sbjct: 84  TLALVGVLFWFLGAKISMQVGEMTQDIPEILRDVRERL---------------------G 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +      +L     + + +               +  ++    FF  +     + + 
Sbjct: 123 RSDIGRKLLFYLSDGNGEKMMKSFQDVFRTSFGVVGDMYIILFIGIFFTVNPKLYREGII 182

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         + + R +   ++    GM I       +      L GVP  +AL  +  
Sbjct: 183 KLIPPGNKKQARDVIRRLDFTLKGWLKGMLIAMFFIASLSFIGLSLIGVPMGLALAFLAG 242

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +  IP   P+     ++ +    +   A  + L   +   I    + P +    IK+P 
Sbjct: 243 FLNFIPNFGPLIAMIPAVLIGFTVSANTALLIALLYVVIQAIESNVVTPMIQNVMIKIPP 302

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                  V      G LG+ +   L+ +I V+  E  +  + 
Sbjct: 303 ALIIISQVLFGTLTGGLGIILATPLLVVIIVLVDELYVKKQR 344


>gi|212635532|ref|YP_002312057.1| hypothetical protein swp_2742 [Shewanella piezotolerans WP3]
 gi|212557016|gb|ACJ29470.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
          Length = 364

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/360 (15%), Positives = 123/360 (34%), Gaps = 11/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +   +I+  + +++YF  G  AP+L AL++ F      +   ++   + T 
Sbjct: 10  KERFSDPQAVTLVLILAGLALAIYFAGGLLAPLLVALVLAFLLEWPVAQM-ARIGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +  + L ++    L      +   L+  +      G+   +   +         
Sbjct: 69  AASLVLILFIGLMLLISFGLIPSLWKQGVSLIGDLPSMIDKGLFTAQQFINQYPQFVNPT 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     ++    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QL-------DTMVAELKKMLDTQHLLDIGKQLLGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +              +K+   + + I +   G  I  +  G+V  + + +  +   
Sbjct: 182 DELLRASKRFFP-SNRDLARKVWNEMHQQIFNYIRGKIIEIVIIGVVSYAFFAVMDLRYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L +   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPIALVAFFQWGISSEFGYLMIGYGIIQALDGNLLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     ++      G+ G+F    L +L+  +     +     +E   + 
Sbjct: 301 LFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPVHGAAVEETAKAE 360


>gi|160940250|ref|ZP_02087595.1| hypothetical protein CLOBOL_05139 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436830|gb|EDP14597.1| hypothetical protein CLOBOL_05139 [Clostridium bolteae ATCC
           BAA-613]
          Length = 383

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 108/334 (32%), Gaps = 3/334 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +++    V L +     AP ++A +I +           +   +    A++  +  
Sbjct: 25  MYFTILLLAAFVLLKYGLPMVAPFVTAFVIAYLLRRPICFASVRLHMNRKITAILMVLLF 84

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  +    L        K LV+ +     +               +   +    L   
Sbjct: 85  YSVAGLLFTLLCVKMFSNGKSLVASLPSVYANYAEPVFTGIFGGIEQYLLRMDPSLLGAL 144

Query: 131 QSL---KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           + L    + S   + +     +  + S F        ++++ M+I  FF   D   ++  
Sbjct: 145 EELEGHFVQSAGQMVSGISMSVMGWLSGFASSLPGMFINLLLMVITTFFIAADYELLTGF 204

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                       + +I   V   +        +I     + L     L GV + + +  +
Sbjct: 205 CLRQLGERPKEVFMEIQSYVVGTLFVCIRSYALIMTITFVELSIGLTLIGVENSLVIAFL 264

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            A+  ++P             +             L   + + +V   + P +VG  I L
Sbjct: 265 IAVFDILPVLGTGGIMIPWTVITALMGSHGLALGLLVVYLVITVVRNIIEPKIVGSQIGL 324

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + T   +  G + +G+LGLF  P+ ++L+  +
Sbjct: 325 HPVVTLVSMFVGAQLLGVLGLFGFPIGLSLLRYL 358


>gi|326772906|ref|ZP_08232190.1| AI-2 transporter TqsA [Actinomyces viscosus C505]
 gi|326637538|gb|EGE38440.1| AI-2 transporter TqsA [Actinomyces viscosus C505]
          Length = 432

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 94/336 (27%), Gaps = 20/336 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                    + I  V LY ++  FAP   AL +  T  P+ S     +       A  A 
Sbjct: 23  ETIAYLLAALTIGAVGLYLIQDLFAPAFFALTLVVTVRPLVSWMTRHRV-PRVVAATAAI 81

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +    ++    L       +  L                            ++ T+  
Sbjct: 82  ALIFTFVVLLFAALAVAVAQLVDTLPQYAPKFQA----------------IWKQVETQLN 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   + +          +   A             +  M + + F   D   I   
Sbjct: 126 GMGVDQSAVLKQVTNVLDTSQLVMVAQSVLGQLTSASAMMGVMSMVVVFLMFDTAKIE-- 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    +             + +RS ++  T+  +   ++     W   VP  +  GV+
Sbjct: 184 IRAAALGVLKPGMASALVSFCEAVRSYWMVSTVFGLIVAVINAVTLWYLNVPMAITWGVV 243

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + I   IP    +        L L+    + A  + L      F++   ++P   G  + 
Sbjct: 244 SFITNYIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYTAANFVIQSLIQPKFTGDAVG 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    TF  L+      G LG  +   L   +  + 
Sbjct: 304 LNTTTTFLCLLFWSTVTGALGTILAVPLTLFVKALL 339


>gi|167031767|ref|YP_001666998.1| hypothetical protein PputGB1_0752 [Pseudomonas putida GB-1]
 gi|166858255|gb|ABY96662.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 365

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 130/344 (37%), Gaps = 3/344 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +++ S    + F   +L A+I+  T +P++     +      + A +  + V+ + 
Sbjct: 24  LVAALVIFSFQVFQPFLELMLWAVILAVTLYPLHCRIQRRTGLKQGYAATLVVLLVLVVL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP+  +       +  LV+ +          P  ++  P             S   +  
Sbjct: 84  LVPIYLVVMSIGESVDSLVTLLKSGAWSVPVPPDSVASWPLIGPKVHALWLAASENMASV 143

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +             +   A+  G  FL +  +II   + + F  R               
Sbjct: 144 LNQWMPQIKGAGLTVLGAAASAGGAFLLFIGAIIISGVIMAFGERGE---VAAQRIAMRV 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ + 
Sbjct: 201 SGEERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVIKGVPGAGMLAIVILMLGIA 260

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              A +    V IY+        A  +F        + D  L+P L+G  + +P      
Sbjct: 261 QAPATLVTVPVIIYVFNTDGFTVAAIVFAVYTFVAGLADNVLKPMLLGRGVDVPMPVVLI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G +GG+   G++GLFIGPV++ +  V++ + +      +    +
Sbjct: 321 GALGGMVVKGIIGLFIGPVILGVTYVLFWQWVALQVPEQPAPPA 364


>gi|330821380|ref|YP_004350242.1| hypothetical protein bgla_2g22990 [Burkholderia gladioli BSR3]
 gi|327373375|gb|AEA64730.1| hypothetical protein bgla_2g22990 [Burkholderia gladioli BSR3]
          Length = 356

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 100/341 (29%), Positives = 168/341 (49%), Gaps = 6/341 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIAT 67
             +  +   ++ ++L+ ++ F   V  A +I    WP               T ++++ T
Sbjct: 19  IALGVLYTALVALALWVIREFLPAVAWAGVIAIALWPALRRIDEVPWLSGRHTVVSIVLT 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V  L +VP+         ++ E+ +    A  +GIPVP  +S +P G      W +  
Sbjct: 79  SAVGLLLVVPVAVAVVQAAGQVHEVFAWARDARLNGIPVPDAVSHLPFGAQQVSTWWQA- 137

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +  + + T +K    +    +   FG   +   +   FM++ LF  +R G +IS  
Sbjct: 138 --NLAQPLHAPTGVKAMNSEAFVSYGKAFGSRVVHAAVLFGFMLVTLFVIFRAGPNISAS 195

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L    +  F A    + + +   I  T  G+ ++ +GEG +LG AY  AGVP    LG++
Sbjct: 196 LMRGVQRAFGANGASLIQRMASAIYGTVTGLVVVGLGEGALLGIAYAFAGVPHAALLGLV 255

Query: 248 TAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           TA+ AM+P  API F   +I+L  ++G    A  L ++G + +F+ +  +RP L+GG  +
Sbjct: 256 TAVAAMLPFCAPIVFCGAAIWLFLVQGATGWAIGLAVFGFVVVFVAEHFVRPVLIGGSAR 315

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           LPFL   FG++GG  T GLLGLFIGP LM ++ V+W E I 
Sbjct: 316 LPFLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWTEWIH 356


>gi|288553204|ref|YP_003425139.1| hypothetical protein BpOF4_00890 [Bacillus pseudofirmus OF4]
 gi|288544364|gb|ADC48247.1| hypothetical protein BpOF4_00890 [Bacillus pseudofirmus OF4]
          Length = 352

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 109/334 (32%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
               + I   + + + LV+ YF+     P+++AL+      P  ++   K +       +
Sbjct: 4   FFTRRTIWIIISILLFLVAAYFILPVSLPLVAALLTALILTPAVNALQRKTKIKRNVAVM 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +    +   ++    + +  ++V                        + +    
Sbjct: 64  LVFTVFVVFIGLSGYYIATKAITQGTQIVENSPQYISDINRAWLNFQRNLEEKYENLPPE 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  ++               + +  +        Y ++ +  +IALF F  +   +
Sbjct: 124 LVQEINITVTNTLSDLRSNISDRNLIQDITSLISSIPGYLVTFLVYLIALFLFMLELPRL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            ++L S            ++  +  VI   F    +++I   +V             + +
Sbjct: 184 REKLYSYLSERTKEKVNFMTSRLSYVIWGFFKAQFLVSIIIFIVTLIGLLFIAPEVALLM 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             I  ++  +P    I   A      +     +     L  A  L I+ +T+ P ++G  
Sbjct: 244 AFIIWLIDFVPIIGSIVILAPWAIFQLIVGDVSTGSKLLILAAVLLIIRRTVEPKVMGKH 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           I L  L T   +  G+   G++G  IGP+L+   
Sbjct: 304 IGLSPLATLIAMYLGLMLFGVIGFIIGPLLVIAF 337


>gi|148271920|ref|YP_001221481.1| hypothetical protein CMM_0741 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829850|emb|CAN00774.1| conserved membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 385

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 109/337 (32%), Gaps = 16/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++   I+ +   LK    PV+ ALI+     P+      +        A IA +
Sbjct: 21  QILAVLVVAIAIVYAAISLKLVVIPVIIALILACAVRPMVLWMERR-GLPDALAAAIALL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + LF   +  + +    +   LV                            +    + 
Sbjct: 80  TGLVLFGGAITAVVFGVQSQWPTLVKATSEGVDQLQSFIEEGGLPIDSSQIDSIRQSAVD 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S                    A        +     +  ++  FFF +DG  I    
Sbjct: 140 FLTS--------------SQFGSGAIAGVSAAAEVVTGAVLGLVVFFFFVKDGPQIWSFF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++     KV+     G   +A+ + + +G+  ++ GVP  + L ++ 
Sbjct: 186 IRPFRGRGRKRAVRVGHEGSKVLGGYIRGTATVALVDTVFIGAGLFILGVPLALPLSLVV 245

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A +P     ++    ++  L+  ++  A  + +       +    L+P ++G  +KL
Sbjct: 246 FIGAFVPIVGATVAGILAALVALVTNDLTTAIIVIIIVVAVNQLEGNLLQPVVLGNALKL 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L     L  G    G++G  +   L A+    WK 
Sbjct: 306 HGLVVLLALTAGTILGGIIGAILSVPLTAVAWTAWKI 342


>gi|33152348|ref|NP_873701.1| putative permease [Haemophilus ducreyi 35000HP]
 gi|33148571|gb|AAP96090.1| putative permease [Haemophilus ducreyi 35000HP]
          Length = 351

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 105/351 (29%), Gaps = 11/351 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+   +PQ I    I+ +    LYF      P+L A++  +             +    F
Sbjct: 10  RKKFNDPQAIALLGILLVGFGILYFFSDLLMPLLVAIVFAYLLEWPIKLLSYHLKMPRLF 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++   S + L     +FL      +    +  +           + L +    +    
Sbjct: 70  SLILVLGSFISLCTFLFIFLLPNLWNQAVTFIRDLPSMFNLLNAWIQALPEHYPELIDYA 129

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    ++  +   +     L T  ++ I               +    + + +FF  +D 
Sbjct: 130 MLDSLMNSLKIKILSFGESLLTLSVNSIISLV--------GLGIYAFLVPLMVFFLLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +    +           +   + + I +   G  +  +   +V  + +   G+   
Sbjct: 182 TLFIRSFVKILP-KNRRLVTNVWFEMQQQIANYIRGKVLEILIVAIVTYAIFLFFGLRYP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP    +  T       LL  G       L L   I   +    + PF
Sbjct: 241 LLLSVAVGLSVLIPYIGAVLVTIPVALIALLQFGISPEFYYLLLAFVISQLLDGNLIVPF 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L    + L  L     ++      G  G+F    L  L+  + K      +
Sbjct: 301 LFSEAVNLHPLTIIVAVLIFGGLWGFWGVFFAIPLATLVKAVIKALPSTEE 351


>gi|304411929|ref|ZP_07393540.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|307303303|ref|ZP_07583058.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
 gi|304349789|gb|EFM14196.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|306913663|gb|EFN44085.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
          Length = 369

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  +     P        +         +A +
Sbjct: 12  RGFAVMAFVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       +    W+ +            + L+
Sbjct: 67  LLMGFIVLMGLWLASVVGSSVNEFSKQLPQYRVQLVEQFAWILNKLHSFNIQISKDQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     +Q+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKLHLALDDPDMRLKQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  G+++G    + GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATGIIVGVGLTIIGVDYAMLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|269118864|ref|YP_003307041.1| hypothetical protein Sterm_0225 [Sebaldella termitidis ATCC 33386]
 gi|268612742|gb|ACZ07110.1| protein of unknown function UPF0118 [Sebaldella termitidis ATCC
           33386]
          Length = 345

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 85/320 (26%), Gaps = 16/320 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P +S+ II +   P       K   +     VI     +   +  ++ +    + +  
Sbjct: 42  LVPFISSFIIVYCLMPFIDVLSKKLRINKKISIVIVFSIFILFLLYIVISILPLVIKQFN 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L+   V                           + L             ++        
Sbjct: 102 GLIRYFVNNQGQIQKEIN----------------EFLDGTNIDLKSVVGKVREYLFSNSM 145

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              +    +F      +    I          SI   L              + + +   
Sbjct: 146 NLINSSIALFSGLFSFMFMTPIFTVMLLFSYDSIKTGLRKSLIRNKKRNILPLLKDIDDA 205

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +        +     G +    ++   V       +I  +  +IP   P       +   
Sbjct: 206 VGKYIKVTLLDCFIIGTLSSIVFYFLKVDYMQLFSIIIGVGNLIPFIGPFISIVPVLIYA 265

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              ++     + +   +   I    ++P+L    + +  + T   ++ G    G++G FI
Sbjct: 266 ATKSLNLFISILVIITVLQGIEANIVKPWLTSKSVNIHPITTLLVILIGGSLFGIIGAFI 325

Query: 331 GPVLMALIAVIWKESIMAIK 350
              +  +I +I++     IK
Sbjct: 326 AIPVYIIIKLIFQFYRKKIK 345


>gi|182415703|ref|YP_001820769.1| hypothetical protein Oter_3895 [Opitutus terrae PB90-1]
 gi|177842917|gb|ACB77169.1| protein of unknown function UPF0118 [Opitutus terrae PB90-1]
          Length = 340

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 102/348 (29%), Gaps = 20/348 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I+  + +  +   L+ +          +++      +      K    + +  +I  
Sbjct: 11  TRTILIAIGLVALAAVLWLIADAIVVAFGGIVLASVLLSLSGPLSRKTHLGARWSLLIVV 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++              + +  EL  ++  A                            
Sbjct: 71  ALMLVAVAALSWLFGNEIVTQFGELQRQLPEALHKVEQWL-------------------- 110

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               + +++ ++  +  G       A  F         +++ ++    +F  D       
Sbjct: 111 GQSPAGRMVVDSVRQVGGNTEALSQAGAFVGSVFGAAANLLLVLFLGVYFAADPQLYRDG 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L         ++        +R   +   I  +  G++ G A  L GVP  ++LGV+
Sbjct: 171 ALRLVPPRRRPQLRRALDDAGVALRKWLVAQAIAMLAVGVLTGVALGLIGVPLALSLGVL 230

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++  +P   PI      + L             L       I    + P +    +KL
Sbjct: 231 AGLLEFVPVIGPIVAAVPGLLLAFSHGPNTVLYAALVYVAVQQIESNVITPLVQRWAVKL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P +     +V     +G+ G+     L  ++ V+ K+  +      + 
Sbjct: 291 PPVLGLLAIVAFGLLLGVPGVIFAMPLAVVVMVLVKDLYVEDTLEAKP 338


>gi|330469076|ref|YP_004406819.1| hypothetical protein VAB18032_25605 [Verrucosispora maris
           AB-18-032]
 gi|328812047|gb|AEB46219.1| hypothetical protein VAB18032_25605 [Verrucosispora maris
           AB-18-032]
          Length = 416

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 93/291 (31%), Gaps = 13/291 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +     +    +  +S +   +  L  +    ++ + +L  +            R     
Sbjct: 114 RLRVPRSLATAVVLISGLGAVVGTLTLVVNQFIVGLPDLSVRAAAGIGQIQDWLR----- 168

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                  +          +  + +           +   A       ++     + ++ A
Sbjct: 169 -------DGPLGLSDGQLNGYVEAGQKWINENSQSLTSGAINTAGTVVEVFTGTLLVLFA 221

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           +FFF RDG  I + L  +             R     + +      ++A  + L +G A 
Sbjct: 222 MFFFLRDGDRIWRFLVGMLPVAARWRTDDAGRASWLTLVAYVRATVLVAFIDALGIGIAL 281

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            L  VP    L  +  + A IP     +S     +  L+      A  +     +   + 
Sbjct: 282 VLFDVPFAFPLAALVFLGAFIPIVGATLSGAVAVLVALVDSGWVTALAILGAVIVVQQVE 341

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              L+P+++G  + L  LP    +  GV   G++G  +   L+A++    +
Sbjct: 342 GNVLQPWIMGRAVALHPLPVVLAVTAGVVLDGIVGALVAVPLIAVLNTAVR 392


>gi|254422152|ref|ZP_05035870.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196189641|gb|EDX84605.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 359

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 94/324 (29%), Gaps = 11/324 (3%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++       +A+ +      +  S + K+     F  V+  V++  +       +   
Sbjct: 20  WSIRFVVLLAFTAITLATVLNRVVRSLVGKR-LKRNFAIVLTLVALAFVLTAIFAVVAPP 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++ + + +  L           + D      + +L                      
Sbjct: 79  FVDQVNQWLDQAPLEVAQVSLWINRIDDRIPVELSEQLQRLDTFIQD----------IPM 128

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +   A  F    L    + + +++       +  +      S+    +     +I 
Sbjct: 129 IARSVFNNAFLFFRGTLAILFNALLVLVITIMLLVNPKAYRNVFVSIFPQFYRYRVIEIL 188

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               + +     G+    +   ++  S   + GVP  +    +  ++  IP   P+    
Sbjct: 189 DHCERSLVGWGAGILFNIVVITVLSFSGLAILGVPLPIGNAFLAGLLTFIPNIGPVLSVV 248

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
               L +    +    +     +   I    L P ++   + L         +      G
Sbjct: 249 PPAVLGLLEAPWKGAAVVGLYILIQQIESNLLTPMVMKRQVSLLPAIALTSQLVCGVLFG 308

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
            +GLF+   L  +  V  +E ++ 
Sbjct: 309 FIGLFLALPLTVVAQVWLQELVVK 332


>gi|114326966|ref|YP_744123.1| hypothetical protein GbCGDNIH1_0302 [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315140|gb|ABI61200.1| hypothetical membrane spanning protein [Granulibacter bethesdensis
           CGDNIH1]
          Length = 397

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 80/290 (27%), Gaps = 18/290 (6%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +  +  + +    +       + E++ L  ++             L        
Sbjct: 105 PGLWLSLILLLFVGIIAGAIWLRGPTLITEIEALGGRLNDQFSAVWDRLGSL-------- 156

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                           +       ++  + I   A+      L    S+  ++I   +  
Sbjct: 157 ----------DYAQQVVHKARAYLSSAGEKIAGLAAGAATSTLGGIGSLTVILIVAIYLA 206

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  +         +     ++       ++  F+G  +  +  G++      L GV
Sbjct: 207 ASPGIYVRGTLRCLPKSWRPRGAEVMHETAHALQWWFVGQVVDMVMIGVLTWIGLSLLGV 266

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                L +I A+   +P    I+    ++ +        A  + +  A    +    + P
Sbjct: 267 KLAGTLALIAALCNFVPYVGAIAGAVPAVLVAFGEGPQTALYVGVMFAGVQALEGNVIAP 326

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +    + LP + T           G +GL +   + A+  V  +   + 
Sbjct: 327 IVQKSTVDLPPVLTILSQTVLGTIFGPVGLILATPIFAVGMVAVRMIYVE 376


>gi|27379781|ref|NP_771310.1| hypothetical protein bll4670 [Bradyrhizobium japonicum USDA 110]
 gi|27352934|dbj|BAC49935.1| bll4670 [Bradyrhizobium japonicum USDA 110]
          Length = 365

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 131/354 (37%), Gaps = 5/354 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I   ++  +I+ +   ++ F   +  + ++    +P +S             A I
Sbjct: 15  IIQLVIRLGLLALLIIWTFLIIRPFVPILAWSGVLAVAFYPAFSWVAKILGGRPKTAAAI 74

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + + I P  +L    +  ++EL  ++   +      P  L   P           
Sbjct: 75  LTLITLGIVIGPATWLGISAVDGVRELAHQLGTGDLALQSAPEQLKSWPLVGPWLYDLWD 134

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    +             +  FA   G+  L +       +    F +  G  + 
Sbjct: 135 QAYTNIRAVLREVAPYLQPLAGPLLSFAGDAGVGTLQFL----VSVFVAGFLFPHGPRLV 190

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                    + P   +    +    IR+   G+  +AI + L+ G  + LA VPS   L 
Sbjct: 191 AASRGFLFRIVPEQSEHFLGLAGATIRAVAQGVIGVAIVQALLAGIGFKLAAVPSAGLLA 250

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I  +++++  GA +    V I++    ++  A  L ++  +    +D  L+P ++G  +
Sbjct: 251 FIVLLLSIVQIGAFLVLLPVIIWIWTAKDVTTALLLTVFLVLV-GFIDTMLKPLVMGRGL 309

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             P +  F G++GG    G++GLFIGP+++++   +    I           ++
Sbjct: 310 TTPTIVIFVGVIGGTLAHGIVGLFIGPIILSVAWEMMMAWIRTEDRAGAGAKAS 363


>gi|323701853|ref|ZP_08113523.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           nigrificans DSM 574]
 gi|323533157|gb|EGB23026.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           nigrificans DSM 574]
          Length = 362

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 103/331 (31%), Gaps = 2/331 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L +  FL     P + A+ I F   P+          S      ++ +++       + 
Sbjct: 32  LLHAFTFLLPLMVPFVLAIFISFLIEPMVVILQKHVRMSRGPAVALSMLALFSFLGTIIS 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    + E+ +L   +             L  +P            +++       S  
Sbjct: 92  LILLRLVTELIDLSKTLPDVITDIRIWFENL--LPRLQHLYGELPPAVTNYVQESFGSMA 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                 I                    ++  ++A +F  +D  ++ ++   +  H +   
Sbjct: 150 QALQVLISKTVNSLLNTFSAVPGIVTLLVVSLLASYFISKDRRALVRKWIKVVPHPYGEK 209

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              + + V     S      I+     L+  +  ++ G    + +G++     +IP   P
Sbjct: 210 SLDVLKEVFSAFLSYIKAQGILVSISTLISITGLYIIGADYALTMGLLIGFFDIIPVLGP 269

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            +     I               L     +    + L   +V   + L  L T   L  G
Sbjct: 270 ATVFLPWIAWSFISGADTFGIKLLILYFIVLGTRQLLEAKVVSDNLGLHPLATLVALFLG 329

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            + +G +G+ +GP+++  +  I K  I   +
Sbjct: 330 FKLLGFIGMVLGPIMLIAVQAIAKAGIHTSR 360


>gi|50955276|ref|YP_062564.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951758|gb|AAT89459.1| integral membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 413

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 118/337 (35%), Gaps = 14/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ + +  +  L+    PVL A+++G    P     I  +        +   +
Sbjct: 56  RLLVIGAVIVVAVFLIVQLRLIVIPVLIAVLLGALLVPFKELLIRHRW-PVWLAILTTLL 114

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ +    L    +    +  +L ++ V A         WL+  P G+  +++ +   +
Sbjct: 115 TLIVVVGGLLSLAIWQVTRQSHDLQTQSVAAYDGFRA---WLTTGPLGLSEAQIASGLDT 171

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S++                  A   G         ++  + ++ F   DG  I   +
Sbjct: 172 LWTSIQQD---------SQVFVSGALSLGSTLGHVLAGVLLTLFSVLFILIDGKGIWAWI 222

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +             R     +R+      ++A  + L +G   +  G+P  + + V+ 
Sbjct: 223 VRVFPRSARGAIDNAGRAGWTTLRNFVKVQILVASIDALGIGLGAFFLGLPLVIPIAVLV 282

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP    + +        L+      A  +     +   I    L+P ++G  +K+
Sbjct: 283 FLGSFIPIVGAVVTGALAVFVALVFKGWVFAVIMLAVVLLVQQIEGHVLQPLIMGTAVKV 342

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L     + GG    G+ G      L+A++ V+  +
Sbjct: 343 HPLAVVLAVAGGSLLAGIPGALFAVPLVAVLNVMVND 379


>gi|146312618|ref|YP_001177692.1| hypothetical protein Ent638_2977 [Enterobacter sp. 638]
 gi|145319494|gb|ABP61641.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 353

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 107/347 (30%), Gaps = 12/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L AL++ +           K   S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGILFFFSGLLAPLLVALVLAYLLEWPTVRLE-KIGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            + I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  ASSIVLILFVGILLLMSFVVLPIAWQQGINLIRDMPGMLNKLSDFSATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRARIMTMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  I  G+     + + G+   
Sbjct: 181 EQMLNAVRRILP-RNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGVATWIGFVIFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+     +IP       T   I   L   G        F    I   +    L P 
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVIGVALFQFGLGTEFWSCFAVYLIIQGLDGNLLVPV 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L    + L  L     +V      G  G+F    L  LI  +     
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVVHAWP 346


>gi|113476022|ref|YP_722083.1| hypothetical protein Tery_2392 [Trichodesmium erythraeum IMS101]
 gi|110167070|gb|ABG51610.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 349

 Score =  113 bits (283), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 103/336 (30%), Gaps = 9/336 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    +   +  L+ ++     V +A++I  T   +     S  +   +   +I+    +
Sbjct: 7   IGIFTILTSIYILWQIRQLLLLVFTAMVIATTLNKLSRKLQS-LKIKRSLAVLISVSLFI 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +     +      + ++L++ V             L D        +L    ++   
Sbjct: 66  LLIVTFFWVIVPPLAEQFQQLITIVPQGINKLNDWLNILRDQLPNQLKEQLPDIDINEII 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    L  N  +F+      F  + L + LS             D  S  Q +  L
Sbjct: 126 PQLQPILNQLINNAGEFVGNTFGIFLSLLLTFVLS--------MMMLVDPISYRQGMIKL 177

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      I       +    L   +      L+      +  +P   A  V+  ++
Sbjct: 178 FPSFYRQRVNLILDNCEIALGGWVLHSLLKMSVVTLLSFIGLSILKIPLSSAQAVLAGVL 237

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP    I      + + +  +   +  + L   +   I    L P+ +   + L    
Sbjct: 238 TLIPHIGLIISIIPPMVIALLYSPLKSALVLLIYILIQQIEHNILNPYFIVKKVSLLPAI 297

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           T    V      G+LGL +   L  +  V  KE ++
Sbjct: 298 TLISQVFFAHFFGVLGLVLALPLTIICQVWVKELLI 333


>gi|283795713|ref|ZP_06344866.1| membrane protein [Clostridium sp. M62/1]
 gi|291077393|gb|EFE14757.1| membrane protein [Clostridium sp. M62/1]
          Length = 398

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 45/356 (12%), Positives = 109/356 (30%), Gaps = 21/356 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS--------FISKKEES-------STFLAV 64
           +   L  L+G  AP++   I+ +   P+Y+            + +               
Sbjct: 36  VSAFLGRLRGIAAPIIYGSILAYLLAPVYNRVTGAGLRVLSGRLKSRKHAEVIARAVGTA 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL--SDIPGGMWASEL 122
            +   +  +    L  +    +  +    +      Q+     + L   +          
Sbjct: 96  ASLAVIFVVIAGLLQLIIPQVVDSIMGFQAAFPTYLQNLYSWIQKLLADNSEIEQIVIGN 155

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S        + T    N +       S    +  ++  + +  +I + +      
Sbjct: 156 IQTAVSLFDGWLEQAFTRFDMNRLVEFLTGVSSSLFLLFNFVKNWLIGLIVMVYMLNIKD 215

Query: 183 SISQQLDSLGE----HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +  Q   +           +     R+V ++     +G  + ++  G++      +   
Sbjct: 216 RLITQAKKIVYGCLSIRLANHVISEMRLVHRMFGGFIIGKILDSLIIGILCFIGTSILHT 275

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  + + VI  +  +IP   P      S  L++  +      L LW  I   I    + P
Sbjct: 276 PYALLVSVIVGVTNVIPFFGPFIGAIPSGILVLLVSPVQCAVLLLWILILQQIDGNIIGP 335

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            ++G    L      F ++      G +G+ I     A+I  + K+++      K+
Sbjct: 336 KILGNSTGLASFWVLFSILIFGGLFGFVGMIIAVPGFAVIYDLVKKAVNYSLRRKQ 391


>gi|116611251|gb|ABK03975.1| protein of unknown function UPF0118 [Arthrobacter sp. FB24]
          Length = 371

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 108/337 (32%), Gaps = 11/337 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  ++             +++AL I     P+      + +       +++   ++    
Sbjct: 45  LALLVYWIGSNTTQLLLWIVTALFIALGLDPVVRWLEGR-KLPRPIGILVSVTVLVSAVA 103

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L    + ++ ++V +     Q  I             +   +  +     +  + 
Sbjct: 104 GFFATLIPTIVQQVTQVVQEAPRWIQDFID----------SDFFRSVDDQFGVRERITQE 153

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L +     + +  I      FG    +     + +++   +F     ++ +    L    
Sbjct: 154 LEKFVNNPDAMGGIFGGVVGFGSTVANGLFGTLIVLVLSLYFLAALPAMKKWGYRLAPRS 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A  + +S  +   + +  +G   +A+           + GVP  V L  + A++A IP
Sbjct: 214 RRARVEALSEEITGSVGNYVIGQACVALLNATFAFIVMSIVGVPFAVLLAFVVALLAFIP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +    +   + +      A    +     L      + P ++   + +P       
Sbjct: 274 LVGGMIAGVLVTLIALTAGWQTALVYAICYFAYLQFEAYFISPRIMQKAVAVPGAVAVIS 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++ G   +G+LG  I     A + ++ KE  +  ++ 
Sbjct: 334 VIAGGSLLGVLGALIAIPTAAAVMLLVKEIFIVRQDK 370


>gi|15604477|ref|NP_220995.1| putative permease PerM [Rickettsia prowazekii str. Madrid E]
 gi|8928516|sp|Q9ZCT3|Y630_RICPR RecName: Full=UPF0118 membrane protein RP630
 gi|3861171|emb|CAA15071.1| PUTATIVE PERMEASE PERM HOMOLOG (perM) [Rickettsia prowazekii]
 gi|292572259|gb|ADE30174.1| Permease PerM-like protein [Rickettsia prowazekii Rp22]
          Length = 351

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 119/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   +   + + + +     +     P   A II +   P      SK E S+   + I
Sbjct: 1   MNRTAVFWLVFLTLFISGFMLITDTIKPFFIAFIISYLLQPAIYFIESKLEISNKLASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F +    L      ++   ++ +     +          +P  M        
Sbjct: 61  IYLIFLSIFFLIFTILIPIIYGQIFTFINNIPKYKNYLQSEI-----LPPIMGKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      +          +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKHSLSDFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWDKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             ++SL          +I   +  ++ S   G   I +        A+ L G+   + LG
Sbjct: 176 TNMESLLPIKTRPKILEILSAINNLLSSYIRGQLNICLLLSTYYSIAFTLIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   I        L P ++G 
Sbjct: 236 ILTGFLVIIPLLGTFISFLLTLIIGYLTFGITSKLLYIMIIYLIGNIGESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFAIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|315649616|ref|ZP_07902701.1| hypothetical protein PVOR_30708 [Paenibacillus vortex V453]
 gi|315275089|gb|EFU38464.1| hypothetical protein PVOR_30708 [Paenibacillus vortex V453]
          Length = 359

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 111/328 (33%), Gaps = 9/328 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI    L F      P++ +    +   P+      + + + +   ++  V    +F
Sbjct: 26  LVNFIFRPILSFFSIILVPLMLSGFFYYLLRPLVDLLEKR-KLNRSLAILLIYVVFAGIF 84

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              ++ ++     ++  LV              +   +           +  L+      
Sbjct: 85  TGFIIGVWPSLRDQIIALVDNAPALFAALGEQLQEWENNGLFKEIFPEDSNPLTQLTD-- 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                     G  F+  +      I  ++ + +    I L++  ++G    + + S   +
Sbjct: 143 ------YLNQGFTFLTNYIMNLFSIVSNFAIVLFTFPIMLYYMLKEGGKFGKMIVSFMPN 196

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      +   +   ++   +G  ++ +  G+++   + + G+P  + L V+      I
Sbjct: 197 RFKEVGASVLDEINSALKGFIVGRVLVNLALGVLMYFGFLIIGLPYALLLTVVAFFANFI 256

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I  +   + +    +   A    +       + D  + P++ G  + +  +    
Sbjct: 257 PFIGAILSSIPIVIIGFIQSPGTAIWSLVVILAAQQVQDNLIGPYIFGKQLAIHPITIII 316

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++ G    G++G+ I   +  +I ++ 
Sbjct: 317 LVLVGQDLGGIIGILIVVPVYMIIKIVV 344


>gi|229818722|ref|YP_002880248.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
 gi|229564635|gb|ACQ78486.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
          Length = 364

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/343 (10%), Positives = 92/343 (26%), Gaps = 19/343 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++   +  +   +L  L+G    ++ A  +     P     +          A +A + 
Sbjct: 2   GVVAVFVGILSWYALGSLQGLGVNLVIAFFVALALEPAVVWLVRH-GWRRGAAAGVALLG 60

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +  V L       + ++ +LVS +                                 
Sbjct: 61  SIIVIAVVLALFGNLFVQQLIQLVSNLPDVYATIQEWVE----------------GQFGV 104

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                            D +   A   G   +    +   +++  ++    G      + 
Sbjct: 105 VVPDSDDLIRQALEQWGDDVASGALAVGAGIVGGLFAASVILLVAYYLLAAGPKFRASIC 164

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++  I    +        ++A            + G P  + L V T 
Sbjct: 165 RWLTPNRQEEVLRMWEITQVKVSDFINTRIVLAALSTTFTFVFLLIMGTPYALPLAVFTG 224

Query: 250 IMA-MIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +++  +P     I      +  L    I     +  +      + +    P +    +++
Sbjct: 225 VVSQFVPTIGTYIGGALPVVVALAAQGIGYGLAVTAFIVGYQQVENLIFSPKVSARALEM 284

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +F  ++      G LG F+   + A I  I    +   +
Sbjct: 285 NPAVSFVAVLAFGAVFGPLGAFLALPIAATIQAIGNTYMRRHE 327


>gi|312880432|ref|ZP_07740232.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
 gi|310783723|gb|EFQ24121.1| protein of unknown function UPF0118 [Aminomonas paucivorans DSM
           12260]
          Length = 373

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 122/337 (36%), Gaps = 5/337 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST--FLAVIATVSVMCLFIVPLLFLF 82
           +       P+  + +  + ++P Y     +          A + T  ++    +PL  + 
Sbjct: 33  WMALPLLRPLAWSAVFSYFAYPAYRFLHQRVFGGRWANLAAALTTGIILLFLAIPLGTVA 92

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                E   L   +                       + +          LK L      
Sbjct: 93  VSLGREAVRLYGVLSEWLPLLDREGVDALLSRVHASGASVLGPLFFRVPELKALLGET-G 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +   +            S++ + I+ FF  RDG ++   +  L    F    K 
Sbjct: 152 RWVGAGLTALSRGMVANAFHSFFSLVVITISSFFLVRDGRAMVAFVGDLLPLPFHEK-KA 210

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PIS 261
           +S    K++++   G+   A  +  + G  +W  G+P  V  G    +  MIP    P+ 
Sbjct: 211 LSLRTQKMLQAVVYGIMFTAAIQATLGGLGWWFVGLPHPVFFGGAMFVTGMIPFVGTPVV 270

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +    I LL+ G+      L LWG   +  VD  LRP  +    K   L  F G++GG+ 
Sbjct: 271 WAPGGIVLLMTGHTQEGVLLLLWGGGVVSTVDNFLRPLFISEGSKAHVLLVFVGVLGGLA 330

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G LGLF+GP+L++L   + +     ++E + + SS
Sbjct: 331 AWGFLGLFLGPMLLSLSLFLLESYRTILREGERRASS 367


>gi|260886752|ref|ZP_05898015.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
 gi|330839431|ref|YP_004414011.1| protein of unknown function UPF0118 [Selenomonas sputigena ATCC
           35185]
 gi|260863604|gb|EEX78104.1| conserved hypothetical protein [Selenomonas sputigena ATCC 35185]
 gi|329747195|gb|AEC00552.1| protein of unknown function UPF0118 [Selenomonas sputigena ATCC
           35185]
          Length = 342

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 114/352 (32%), Gaps = 17/352 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+  +   ++L + +F       +  +L++     P       K+       A +  
Sbjct: 7   RTSIILAITFTLLLSAFWFFPDLAFIIFLSLLLQLLLQPPVDFLQRKRV-PRVLAAGLIV 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ + L    ++ L    +   +  VS +         +P            S++     
Sbjct: 66  IAFIALLTGLVVLLSLSFVPTFRNFVSDLPNITLSLQNIPFVSDSDLLRSELSDVLADL- 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +    + + +  F +      ++ + +I   F+  +DG +I   
Sbjct: 125 ---------------RSLGTDLLKSSLTFLLEIFGKFMAFVIIIFVTFYLLKDGKNIRNW 169

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L           +   + + +R       ++    G V+   +   G+P       +
Sbjct: 170 LAGLFPQASRRRVLNLFNDILRALRVYIFSQIVMCAITGTVVFLYFEFTGLPYASVFAFL 229

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + +   +P   P + +A  I+L    +        L+  +   +    + P L+G  + L
Sbjct: 230 SGLGEFVPVLGPTAASAFGIFLTATESRGLVLQTALFYIVLTQVNHNFVYPTLIGKSLNL 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +    G++ G   +G  G+F+    + ++ ++  +     +E   +    
Sbjct: 290 HPVAIILGVIFGGEILGPAGMFLAVPFIVIVKLVIADIYHDRQEVVRQNDEE 341


>gi|91975850|ref|YP_568509.1| hypothetical protein RPD_1370 [Rhodopseudomonas palustris BisB5]
 gi|91682306|gb|ABE38608.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB5]
          Length = 367

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 108/333 (32%), Gaps = 17/333 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +++ +++  LY  K FF P+++A ++G    P  +    +        AV+     
Sbjct: 33  ALVALLIVVVIGLLYVAKPFFLPIVTAFVVGTMLSPAATYME-RGRIPRAVSAVLIVGLA 91

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      +  +    +       S++            +           +        P
Sbjct: 92  LAGVGFMVALISVPLID----WTSRLPELGAILRDKLNFFERPMAFWRQLQSAMGGSELP 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +   + +       ++F+    + F +  +   L                      + +
Sbjct: 148 STPIQMPQIEWMQPTVEFLSPTLTEFLLFLVTLVLF----------IATWKDLRRALVMN 197

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G         +I   + + +    L +T+I +  G   G    LAG+P+   LG + A 
Sbjct: 198 FGGRDARLRMLRILNEIEQSLGGYLLTVTVINLCYGAATGVICALAGMPNPAGLGALAAT 257

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP   P+    +   + I         L   +   +  F+    + P ++G  ++L 
Sbjct: 258 LNFIPVIGPVVMFVILTLVGIISMPTMGEGLLAPIGFVLLTFVEGHFITPTIIGRRLELN 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  F  L       G +G F+   L+ +  V+
Sbjct: 318 ALAVFIALAFWTWLWGPMGGFLASPLLIVGLVL 350


>gi|119503091|ref|ZP_01625176.1| succinyl-diaminopimelate desuccinylase [marine gamma
           proteobacterium HTCC2080]
 gi|119461437|gb|EAW42527.1| succinyl-diaminopimelate desuccinylase [marine gamma
           proteobacterium HTCC2080]
          Length = 354

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 110/352 (31%), Gaps = 12/352 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   + ++  +I+   L+ L  +   F P+  A+++ +    + +        S+   
Sbjct: 11  RYLSEEESVLLLVILVGSLILLAAVGHIFTPIFVAVVLAYLMQGVANQLYKW-GLSTRIG 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             IAT+     F   +L L      ++  L  +     + G      L +    + + E 
Sbjct: 70  VWIATLMFTSAFFAFVLGLLPLVWRQLVSLAREAPAMVERGRAALSVLPEKYPAIISQEQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  Q         L T G   IP              + ++   + +FFF +D  
Sbjct: 130 INLAMNSVQGDMAGLGQLLVTKGFSSIPGLL--------AVLVYMVLTPLMVFFFLKDRD 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I     SL          +I   +     +   G  I  I  G V   A+   G+    
Sbjct: 182 QILDWFTSLLPTE-RPMLSRIWSEMNIQFANYVRGKVIEIILVGGVSYIAFAFLGLNYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  +IP       T   + +     G   +         +   +    L P L
Sbjct: 241 LLALLVGLSVIIPYIGATLVTIPVVAVAFFQWGIGPSFYWALGAYGVIQLLDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               + L  +     ++      G+ G+F    L  L++ I      A  E 
Sbjct: 301 FSEAVNLHPVAIIIAVLFFGGVWGVWGVFFAIPLATLVSAIVSAWPTAGNEQ 352


>gi|84385148|ref|ZP_00988180.1| hypothetical membrane spanning protein [Vibrio splendidus 12B01]
 gi|84379745|gb|EAP96596.1| hypothetical membrane spanning protein [Vibrio splendidus 12B01]
          Length = 366

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 126/337 (37%), Gaps = 5/337 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L ++PL
Sbjct: 24  LVYWCFSILRPFILLVIWGAIIATALYPVAVAISNKTGMSKGKASALLSFIGVLLLLIPL 83

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L         +L++ +             L DIP           H S       ++ 
Sbjct: 84  VALSSGIYTSASDLMTGLQDGTLSLPKPKESLQDIPLVGERVYAALVHASSNIEGVFITY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                     +       G  F+ + +S I        F  +       +  L   L   
Sbjct: 144 ADELKVFASKMASILGSLGGGFVQFIISTIIAGA----FMSNADKCQTGVTHLVVRLTDG 199

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I    
Sbjct: 200 KGVELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAALWALAVLLVAIIQLPP 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++     IY+    +   A+   +W  +     D  L+P L+     +P L    G +G
Sbjct: 260 ILALLPAIIYMFSVESTLAASLFLVWCILVSG-SDAILKPVLLSRGSHIPMLVILLGALG 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+   G++GLF+G V+++L   +    +   ++N+++
Sbjct: 319 GMAMSGIVGLFVGAVILSLSYELMMAWLGLEEKNQQE 355


>gi|167038699|ref|YP_001661684.1| hypothetical protein Teth514_0024 [Thermoanaerobacter sp. X514]
 gi|307723242|ref|YP_003902993.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X513]
 gi|166852939|gb|ABY91348.1| protein of unknown function UPF0118 [Thermoanaerobacter sp. X514]
 gi|307580303|gb|ADN53702.1| sporulation integral membrane protein YtvI [Thermoanaerobacter sp.
           X513]
          Length = 355

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 116/348 (33%), Gaps = 3/348 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R   +  + ++   +  I  + ++ +  F  P + AL++     P  +    K +    
Sbjct: 6   LRYGDIIKKTLLIVAVFIIFYLIIFKIIPFLMPFVVALLLAVIIDPGVNFLEKKLKVPRG 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +       + E+  L                 L D     + S
Sbjct: 66  LASFILLLILIGVIGSLIAISITQLIYELSSLAEISTNYANTINDAILNLVDRIRTYYIS 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +++      + S     +     +  +   F     ++    +  ++A FF  +D
Sbjct: 126 LPP--NITSLIESNMHSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 184 KNLILDFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVIIGFDY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              LG+   I+  +P     S         +I    +      L   I + +V + + P 
Sbjct: 244 PFLLGLFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVVVVRQMIEPK 303

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +VG  I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 304 IVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 351


>gi|86607588|ref|YP_476350.1| hypothetical protein CYB_0086 [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556130|gb|ABD01087.1| putative membrane protein [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 376

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 110/324 (33%), Gaps = 8/324 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     V +A+++      +      +         VI +++V+   I+  L +   
Sbjct: 20  WQIRQILLLVFAAIVLAVALDTLAQ-IPQRYGFRRGPSIVITSLTVLVAAILVGLIVVPP 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              +++ L          G+P     +          L T            S     T 
Sbjct: 79  LAEQLRWL-------FTDGVPAGIVQAQRLFESLILSLPTDIELPTLRELANSLVPQATE 131

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +  F S     F    L+++F+II       D  + S+   S+    +    + I 
Sbjct: 132 LVRQVRDFFSESFTAFFGTLLNLLFVIILTILLLADPQAYSRAFVSVFPAFYRPRIRYIL 191

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +     +R   +G+   +    L+ G   W+ GVP  +A  V+  +   IP   P     
Sbjct: 192 KRCELALRGWLMGILFTSTLVMLLSGIGLWILGVPLILANAVLAGLFNFIPNIGPTLSVV 251

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + + +    + +  +     +   +      P ++   + L    T    V      G
Sbjct: 252 APMLVALTDAPWKSLAVLGLYILIQQLESSVFTPIVMSRQVSLLPALTLVAQVTSAFFFG 311

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           +LGLF+   L A++ V  +E ++ 
Sbjct: 312 VLGLFLAVPLAAILQVWIQEVLIR 335


>gi|119487278|ref|ZP_01621029.1| hypothetical protein L8106_21177 [Lyngbya sp. PCC 8106]
 gi|119455833|gb|EAW36968.1| hypothetical protein L8106_21177 [Lyngbya sp. PCC 8106]
          Length = 321

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 97/325 (29%), Gaps = 11/325 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ ++       +A+I+      I      K+         I+   +  +    +  +  
Sbjct: 1   MWKIRQVLLLAFTAIILATAINRIVKLLQ-KQGMKRGVAVGISVFFLFLVLAGFVSIIVP 59

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + + +EL+++V +  +        L D+        L                     
Sbjct: 60  PVIDQWQELITQVPMGFEQLKTWYLGLQDLIPSRIFGNL----------QSPERLLEQIP 109

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +    +           L   L+++ +I        D     +    +    +     +I
Sbjct: 110 DPGFGLFNNVFSLFSTSLGITLNVVLVIAVTIMLLSDPTPYRRNFILIFPAFYRPRVNEI 169

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
                + +    +G+        L+ G   W+ G+   +   ++   +  IP   P    
Sbjct: 170 LNECEQNVVGALVGLLFNMTVITLLSGIGLWILGIRLALVNALLAGFLTFIPNIGPTISV 229

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                L +    + A  +         I    L P ++   + L    T    V      
Sbjct: 230 IPPALLALMDAPWKALAVIGLYIAIQQIESNILTPLVMKHEVSLLPAITLLSQVIFTIFF 289

Query: 324 GLLGLFIGPVLMALIAVIWKESIMA 348
           G LGL +   L+A++ V ++E ++ 
Sbjct: 290 GTLGLLLAIPLVAVLQVWFREMLVK 314


>gi|119358137|ref|YP_912781.1| hypothetical protein Cpha266_2369 [Chlorobium phaeobacteroides DSM
           266]
 gi|119355486|gb|ABL66357.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           DSM 266]
          Length = 357

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 77/354 (21%), Positives = 153/354 (43%), Gaps = 6/354 (1%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + I+  +++FI  V +  ++ F   +L A I      P+Y  F    + + +  A + 
Sbjct: 6   SNRTILLVIVLFISAVFIAMIRYFLMALLMAAIFSALLMPLYHRFERWFQGNKSLSAGVT 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++++ + ++P L L    + +   L        Q  I  P   S     +     +   
Sbjct: 66  ILALVLMVLLPSLALIGMVLAQALRLSRLAAPWVQQQIHEPGAFSRTLETL----PYYHE 121

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L   +   +           + +    S F +  ++    + F +  +FFF +DG  I  
Sbjct: 122 LEVYREDILKKIGEFAGTAGNMLLGAISSFTLSAVNELFLLFFFLYTMFFFLKDGREILD 181

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ S    L      ++      V R+T  G  ++ + +G + G A  LAG+ S +  G 
Sbjct: 182 KMLSYLP-LTEGVKSRLLEKFLSVTRATLKGSVVVGLVQGTLAGLALHLAGIDSALFWGA 240

Query: 247 ITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I  +++ IP    P+ +    IYLL+ G    A  + L+ +I +  +D  LRP L+G   
Sbjct: 241 IMTLLSFIPVLGSPLVWVPAVIYLLLIGQYPQALGVLLFCSIIVGQIDNILRPILIGRDT 300

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           K+  L  F G +GG+   G++G+ +GP++ AL   +W+    A  +  +++  N
Sbjct: 301 KMNELMIFLGTLGGLGLFGIIGIIVGPIVAALFVTVWEIYGEAFSDYLDEVRGN 354


>gi|326384783|ref|ZP_08206459.1| hypothetical protein SCNU_17662 [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326196445|gb|EGD53643.1| hypothetical protein SCNU_17662 [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 366

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 100/334 (29%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++    + + +  +  + G  APV  AL++     P+      +    +   A+   + 
Sbjct: 21  VLVGIAGIVVAVAGMKLIAGLIAPVFLALMLTIAVHPMGRWL-RRHGCPAWLAALTLVIG 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  + ++    + Y        +       +     +  +L +                 
Sbjct: 80  VYGILVILFGSIIYSAARLTTLMPQYADKFDSIVDDLKHFLGE----------------- 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      L       I   A       +     ++ +++   F   D    S +L 
Sbjct: 123 HGVNSESIHNMLSNVDAGKIISAAGSLLSGLVSTTSGLVLVLVVALFMAVDAVGFSDRLT 182

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L                    R+  +  T+  +   ++   A W  G+P  +  G+++ 
Sbjct: 183 AL--DRLRPNVSVALNNFAAGTRTYLVVSTVFGLIVAVLDAGALWALGIPLPLLWGLLSF 240

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    +        L L+ G       + +  +    ++   ++P  VG  + L 
Sbjct: 241 ITNYIPNIGFVLGVIPPAILGLLDGGWSKMLIVIVVYSAINVVIQSIIQPKFVGDAVGLS 300

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   L   +  + 
Sbjct: 301 TTLTFLSLVVWTWILGPLGAILAVPLTIFVKCLL 334


>gi|118466956|ref|YP_884090.1| hypothetical protein MAV_4969 [Mycobacterium avium 104]
 gi|118168243|gb|ABK69140.1| conserved hypothetical protein [Mycobacterium avium 104]
          Length = 382

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 85/307 (27%), Gaps = 13/307 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          +  +    +    L F+    +  +  L  +V  + +            
Sbjct: 67  RHGLPRGGAVALVLLGGFAILGGILAFVVLQFIDGLPGLTEQVTQSIESTRR-------- 118

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               W         S        +      N    +   A        +   + + ++  
Sbjct: 119 ----WLINGPAHLRSEQIDSAGNAAIEALHNNQAKLTSGALSTAATVTELVTAAVLVLFT 174

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L FF   G +I + +  +          +        +        ++A+ +   +G+  
Sbjct: 175 LIFFLYGGRNIWRYVVQIVPAHARERVHEAGSAGYGSLIGYVRATFLVALTDAAGVGAGL 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+P  + L  +  + A IP    +       +  L+   I  A            I 
Sbjct: 235 AIMGIPLALPLASLVFLGAFIPLVGAVVAGFLAVVVALLAKGIVYALITLGLLVAVNQIE 294

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L+P ++G  + +  L     +  G    G++G  +    +A +   ++  +      
Sbjct: 295 AHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFLNNAFQVLLAPNPSA 354

Query: 353 KEKISSN 359
           +      
Sbjct: 355 EAVKQEE 361


>gi|281418098|ref|ZP_06249118.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
 gi|281409500|gb|EFB39758.1| protein of unknown function UPF0118 [Clostridium thermocellum JW20]
 gi|316939860|gb|ADU73894.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           1313]
          Length = 372

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 116/366 (31%), Gaps = 12/366 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-----SLYFLKGFFAPVLSALIIGFTSWPI---YSSFI 52
           M   ++        +++ +I       +++     F P    + + F           F+
Sbjct: 5   MTRNLIIVITYAVALVLIVINFVPIMRAVWKFIVLFKPFFMGIAVAFVLNRPCMAVERFL 64

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
           +K+   +    ++  +++   ++V LL +       + EL+  + +   +         D
Sbjct: 65  NKRLFKNRLKVLVRGIAITVTYLVVLLLITLIISFIIPELIKSIQVFLSNMGAYIDNFRD 124

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +   +       +         IL  T    + +  +           L +  +++  ++
Sbjct: 125 LTNELSELLGLERIDLSSLDKLILEYTNRLGSSLTELMPKIISITTGVLSFFATLVITVV 184

Query: 173 ALFFFYRDGFSISQQLDSLG----EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
              +       +  Q   +               + R+V  V      G    A   G +
Sbjct: 185 FSIYILAGKERLIGQCKKVFSTYLPECLYKKGAYVYRVVVDVFNKYIYGQLAEAFILGSL 244

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 +      + + V+ A+ A++P          +  LL+  +   A    ++  + 
Sbjct: 245 CFIGMVIFRFEYALLISVLIAVTALVPYFGAYIGGFCAFMLLLMISPTKAIWFLVYLVVL 304

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + +  + P +VG  + LP +      + G    G +G+  G  +  ++  + +  ++ 
Sbjct: 305 QQLENNLIYPRVVGSSLGLPGIWVVLAAIVGAGVGGPIGVLTGVPIATVLFTLLRNDVLR 364

Query: 349 IKENKE 354
               + 
Sbjct: 365 RSGKQN 370


>gi|150377302|ref|YP_001313897.1| hypothetical protein Smed_5187 [Sinorhizobium medicae WSM419]
 gi|150031849|gb|ABR63964.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 381

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 125/351 (35%), Gaps = 5/351 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     ++      SL  +  F   ++ A I+    +P Y++  +         A++
Sbjct: 25  RITEIARIGLVGLFAYWSLTLIAPFAIILIWAAILAVALYPAYTALSAVLGHRPRVTALV 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + + + PL  +       ++ +++++   +      P  +   P           
Sbjct: 85  ITMLGLLVIVAPLAAIAISFAEGLQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWS 144

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +                  +  G   L + +S++       F +  G  ++
Sbjct: 145 MASDNLEAVLQQIKPSLLQAGSKALSTIASIGADLLSFVVSVLVAG----FLFGSGARLA 200

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                    +         ++    IR+   G+  +A+ +  +      L  VP+  A+ 
Sbjct: 201 NSARGFASRIGGERGVGFLQLAAATIRNVARGVIGVALLQAFLCVLILSLFKVPAPGAIA 260

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +  I+ +I  G  +    V ++         A  LF    I L I+D  ++P LV   +
Sbjct: 261 FVVLILCIIQIGPALVLLPVIVWAWTSMEFGMA-ALFTILLIPLLIIDNVMKPILVARGL 319

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             P L    G++GG  + GL+GLF+GP+++++   +    +       E++
Sbjct: 320 STPTLVILLGVLGGTLSYGLIGLFLGPIVLSVFHDLLLIWMSTDTVGAERL 370


>gi|326803654|ref|YP_004321472.1| hypothetical protein HMPREF9243_1249 [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651429|gb|AEA01612.1| putative membrane protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 388

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 117/347 (33%), Gaps = 11/347 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI----------SKKEESSTFLAVIATV 68
           II   +  ++   +P L    I F      +               ++       V++ +
Sbjct: 29  IISNFMGQIQNVISPFLVGAAIAFILSIPVNYIEKYLKRFDYFKRHRKTLRGLAIVLSLI 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKHL 127
            ++ L    +  +       +   +S V       I  V R++   P  +   +    +L
Sbjct: 89  LIVLLIYFLIFLVLPDFEDTITSFISIVPTTISQVISKVMRFIDRHPELVTYIQQLDINL 148

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           ++     I     L TN +               +  +S++F I  +         + + 
Sbjct: 149 NNLAQRAIAFVQSLATNLLSQTFTIGIGLVNSLFNLFISLVFGITVVSAKETLTRQVKKV 208

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++    +  Y   + ++   V  +   G  + A   G+++     +   P  + + VI
Sbjct: 209 IYAICNLPWANYLVNVGKLANDVFTNFVSGQVLEAFILGIMVYIGMLICHFPYALTISVI 268

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                +IP    I        L++  +   A    ++  +   +    + P +VGG + L
Sbjct: 269 MGASGLIPIFGAIFGAVAGAMLIVVTSPTKAILFIIFITVVQQLEGNIIYPRVVGGSVGL 328

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P L T   +  G    GL G+ +    +++I  +   +I    + KE
Sbjct: 329 PGLWTLVAVTVGGAFFGLPGMLLSVPTVSVIYQLTAATINHRLDLKE 375


>gi|36958669|gb|AAQ87137.1| Hypothetical protein RNGR00112 [Sinorhizobium fredii NGR234]
          Length = 355

 Score =  113 bits (282), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 70/345 (20%), Positives = 125/345 (36%), Gaps = 13/345 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I   I+V       F   +  AL++     P++              A    +
Sbjct: 15  ELVILVAIAAGIVVCYLLAVPFLPALTWALVLAIMFHPLHRRIAKDLPFPDIAAAAAVAI 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   + +VPL  +    + E       +  A + G                +      L 
Sbjct: 75  AAFVV-VVPLTLVAERLVNEAASGAQIIAEALRTG----------GWREAIANYPRIGLV 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L    L  N    +  F++      +   + ++     LF+F RDG      L
Sbjct: 124 LLWMESQLDLAGLAGNAAALLTNFSASLVRRSVVQIIDVVLTFYFLFYFLRDGREALNVL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++   V + + +   G   +AI +G + G  +WL G+PS +  G+  
Sbjct: 184 KDYFPLRSSE-MDRLFFRVSETVHAIVFGTFAVAIVQGTLGGLMFWLLGLPSPLLWGLAM 242

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++AM+P     I +   ++ L + G    A  L  WGA  +  VD  L P  VG  +KL
Sbjct: 243 GLLAMVPVLGAFIIWIPAALSLALTGEWGKALILTAWGAGVVATVDNLLYPIFVGDRLKL 302

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             + TF  ++GGV   G  GL IGPV   +  ++        +E+
Sbjct: 303 HTVVTFMSMIGGVIVFGPAGLVIGPVTFTVTLLLLDIWCTHHRES 347


>gi|239636474|ref|ZP_04677476.1| putative membrane protein [Staphylococcus warneri L37603]
 gi|239597829|gb|EEQ80324.1| putative membrane protein [Staphylococcus warneri L37603]
          Length = 361

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/341 (11%), Positives = 108/341 (31%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    +  +   F P L +  + +   P  +              +   V ++ +  + +
Sbjct: 29  VFTPVVTIIGSVFLPFLISGFLFYICLPFQTLLEKW-GFPRWASILTIFVVLIAIIAIVV 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +          S      L    + +I + 
Sbjct: 88  AFIAPIIISNINNLIKQTPALQKETERLINF----------SLTQIDKLPSDVTHRINNM 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G+  +   +  +    +     +I +   L +  +D       +    +     
Sbjct: 138 VKSMGDGVTDVLSNSISYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   +++  G++L   Y + G+P    L +   +  +IP   
Sbjct: 198 FVVDLLKDLNYTLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 258 PWLSFTPAAILGIIDGPSTFIWVCVITLIAQQLEGNVITPNVMGKSLSMHPLTIIVVILA 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + I   L A++  +        +   +K +SN
Sbjct: 318 AGDLGGFTLILIAVPLYAVLKTVISNIFKYRQRIIDKANSN 358


>gi|163754904|ref|ZP_02162025.1| hypothetical protein KAOT1_02782 [Kordia algicida OT-1]
 gi|161324971|gb|EDP96299.1| hypothetical protein KAOT1_02782 [Kordia algicida OT-1]
          Length = 362

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 121/351 (34%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +F++L  LY ++     +  A +I     PI      + +  +T   +    
Sbjct: 12  KALAVILGVFLLLYFLYKIQVVIVYIAIAAVISLIGRPIVGVLKRRLKFRNTIAVIFTMT 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ LF+  ++        +   L           + +     +I         +    +
Sbjct: 72  IMIGLFVGLIMMFIPLVAEQGHNL---------SLLNIEELQGNIENLYEQISGYLSTKN 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I             IP F +       ++ + ++ ++   FF  +D   +   +
Sbjct: 123 IDLDQSIKESKIFANIDYALIPNFFNALISGLGNFSIGLLSVLFISFFLLKDSKLLEDGM 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L  +     W +    +  ++   F+G+    I   ++   A  + G+ + + +  + 
Sbjct: 183 LVLVPNNKEQRWSRSFEKIKDLLSRYFVGLVFQIIILFVIYTIALLIFGISNAIVIAFLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNI---------FNATCLFLWGAIELFIVDKTLRPF 299
           A++ +IP   P+    + + L +  N+          N   + ++  I   I +   +P 
Sbjct: 243 ALLNLIPYIGPLFSGILMMVLCMTSNLEADFSEVILPNTIGVMIFFLIAQLIDNFLSQPL 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F  ++      G++G+ +       I VI KE +   K
Sbjct: 303 IFSNSVKSHPLEIFLVIIIWGILFGIIGMVVAVPSYTAIKVILKEFLSDNK 353


>gi|330686149|gb|EGG97767.1| putative membrane protein [Staphylococcus epidermidis VCU121]
          Length = 361

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/341 (11%), Positives = 108/341 (31%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    +  +   F P L +  + +   P  +              +   V ++ +  + +
Sbjct: 29  VFTPVVTIIGSVFLPFLISGFLFYICLPFQTLLEKW-GFPRWASILTIFVVLIAIIAIVV 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +          S      L    + +I + 
Sbjct: 88  AFIAPIIISNINNLIKQTPALQRETERLINF----------SLTQIDKLPSDVTHRINNM 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G+  +   +  +    +     +I +   L +  +D       +    +     
Sbjct: 138 VKSMGDGVTDVLSNSISYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   +++  G++L   Y + G+P    L +   +  +IP   
Sbjct: 198 FVVDLLKDLNYTLKSYIQGQVTVSVILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 258 PWLSFTPAAILGIIDGPSTFIWVCVITLIAQQLEGNVITPNVMGKSLSMHPLTIIVVILA 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + I   L A++  +        +   +K +SN
Sbjct: 318 AGDLGGFTLILIAVPLYAVLKTVISNIFKYRQRIIDKANSN 358


>gi|159899941|ref|YP_001546188.1| hypothetical protein Haur_3424 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892980|gb|ABX06060.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 403

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/358 (11%), Positives = 108/358 (30%), Gaps = 16/358 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    I+ I L  +        P + A+I  +   P+ +    + +    +  ++  +
Sbjct: 16  KFVTVLSIVIISLYLVNQAWHIMIPFIWAIITAYIFNPVVTWMQRRTKTPRFWWVIVLYI 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L  + +  +      ++ +L   + +              +               
Sbjct: 76  IGFTLLTLLVSNVVPLITSQINDLAQTIPIWLDDAKIYVEQHQALTIRGVEI-------- 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     +         +P  A  F     +  + ++   +  F+      +I    
Sbjct: 128 VNLREAEREISGAIAAFAKALPGIAPLFLFGLAEGFILLLVYFVVTFYLLLQAETIPNNF 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         +++   + +V+ +   G  ++ I   ++   A  +  V   + + + T
Sbjct: 188 YRLIPERHRDEIRQLIGSIDRVLSAYIRGQFLLIIIMSVLSYIALSILQVKYALIIAIAT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLRPFL 300
             + +IP   P   TA++  +                A  +           D  + P L
Sbjct: 248 GFLEIIPIIGPYMATAIAALVGFFQGTTPFGWEPWVLALVIIAVYFALRQFEDHFIIPNL 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           VG  + +  +   F ++ G    G LGL I   + A+  +I       + ++    + 
Sbjct: 308 VGHIVNVHPVFVIFAILAGGAVAGGLGLLISIPIAAVARIILSYLHGKLVDSPNPQAD 365


>gi|41409738|ref|NP_962574.1| hypothetical protein MAP3640 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41398570|gb|AAS06190.1| hypothetical protein MAP_3640 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 382

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 85/307 (27%), Gaps = 13/307 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          +  +    +    L F+    +  +  L  +V  + +            
Sbjct: 67  RHGLPRGGAVALVLLGGFAILGGILAFVVLQFIDGLPGLTEQVTQSIESTRR-------- 118

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               W         S        +      N    +   A        +   + + ++  
Sbjct: 119 ----WLINGPAHLRSEQIDSAGNAAIEALHNNQAKLTSGALSTAATVTELVTAAVLVLFT 174

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L FF   G +I + +  +          +        +        ++A+ +   +G+  
Sbjct: 175 LIFFLYGGRNIWRYVVQIVPAHARDRVHEAGSAGYGSLIGYVRATFLVALTDAAGVGAGL 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+P  + L  +  + A IP    +       +  L+   I  A            I 
Sbjct: 235 AIMGIPLALPLASLVFLGAFIPLVGAVVAGFLAVVVALLAKGIVYALITLGLLVAVNQIE 294

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L+P ++G  + +  L     +  G    G++G  +    +A +   ++  +      
Sbjct: 295 AHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFLNNAFQVLLAPNPSA 354

Query: 353 KEKISSN 359
           +      
Sbjct: 355 EAVKQEE 361


>gi|325066380|ref|ZP_08125053.1| putative permease [Actinomyces oris K20]
          Length = 443

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 99/336 (29%), Gaps = 20/336 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                    + I  V LY ++  FAP   AL +  T  P+ S     +        V+A 
Sbjct: 25  ETIAYLLAALTIGAVGLYLIQDLFAPAFFALTLVVTVRPLVSWMTRHRVPR-----VVAA 79

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            + + L    ++ LF    + + +LV  +         + + +     GM   +      
Sbjct: 80  TAAIVLIFAFVVLLFAALAVAVAQLVDTLPQYAPKFQAIWKQVETQLNGMGVDQSAVLKQ 139

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                         +          A    M  +   L      I               
Sbjct: 140 VTNVLDTSQLVMVAQPVLGQLTSASAMMGVMSMVVVFLMFDTAKIE-------------- 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +    +             + +RS ++  T+  +   ++     W   VP  +  GV+
Sbjct: 186 IRTAALGVLKPGMASALVSFCEAVRSYWMVSTVFGLIVAVINAVTLWYLNVPMAITWGVV 245

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + I   IP    +        L L+    + A  + L      F++   ++P   G  + 
Sbjct: 246 SFITNYIPNIGFVLGVVPPAILGLVDSGPWTALWVVLSYTAANFVIQSLIQPKFTGDAVG 305

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L    TF  L+      G LG  +   L   +  + 
Sbjct: 306 LNTTTTFLCLLFWSTVTGALGTILAVPLTLFVKALL 341


>gi|255659544|ref|ZP_05404953.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
 gi|260848098|gb|EEX68105.1| conserved hypothetical protein [Mitsuokella multacida DSM 20544]
          Length = 351

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 113/352 (32%), Gaps = 18/352 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+  +   ++L + +FL      +  +L++     P+          +    A I  
Sbjct: 7   RTSILLGVTFTVLLSTFWFLPQLAFIIFISLLLQLLLTPLVDRLE--CHLNRGLAAAIVL 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            + + + +  +L +    +      V+      +    +P    +        + W +  
Sbjct: 65  GTFLLICLGLVLLVSSTFIPTFTRFVTDFPQITEKLQQMPLIHDNAYLTDEFEQFWLEL- 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                                  + +    +      + ++ ++   F+  +DG  I   
Sbjct: 124 ---------------KAASVDALKSSLTVLLSIFSKFIDMVIILFVTFYLLKDGDDIKVY 168

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L SL      +    +   +   +R+      +I      V+   Y    +P      ++
Sbjct: 169 LASLFPTRDYSRVLALFNRILSALRTYICSQLVICCLTATVVFLYYTARSLPYASVFAMV 228

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + I   +P   P   +   I L    + + A     +  I   +    + P L+G  + L
Sbjct: 229 SGISEFVPVLGPTVASIFGILLTATVDPWIAIQTAGFYLILTQVNHNAVYPTLIGKSLNL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +    G++ G   +G  G+F+    + +  ++ ++      E  +K+ ++
Sbjct: 289 HPVAIILGIILGGEVLGAAGMFLAVPFIVICKLVIEDIYKDRMETIKKLRAS 340


>gi|146328781|ref|YP_001209215.1| hypothetical protein DNO_0295 [Dichelobacter nodosus VCS1703A]
 gi|146232251|gb|ABQ13229.1| conserved hypothetical membrane protein [Dichelobacter nodosus
           VCS1703A]
          Length = 353

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 40/345 (11%), Positives = 103/345 (29%), Gaps = 11/345 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               NP  +   +    + ++ + +  +  PV+ + +I +    +      K      F 
Sbjct: 10  RVFNNPSLMALLLFGCTLSLAFFSIGQWLIPVIISAVIAYLLEGLIKKCE-KNGVRRIFA 68

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  +    L I   + +    + + K L++ + +   +       L      + + + 
Sbjct: 69  VSVVFLLFSFLIIYIFIGVLPILINQAKGLITNLPVYLSYAQEKMHILPKRFPEIISQQD 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L    +        L       + +             + II + I +FFF +D  
Sbjct: 129 IDLMLGSMNAAVAEYTKIL-------LSKKIFESLFAVFTVLVYIILIPILIFFFLKDKV 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   L            + I   V   I +   G  +  +   ++    + + G+   +
Sbjct: 182 KILSWLGQFLPDNH-QIIQDIWTEVDIQIGNYIRGKFVEVMIIWIMCFIPFNILGLQYSL 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  +IP       T   + +     G          +  +   +    + P +
Sbjct: 241 LLSLMVGLSVLIPYIGATIVTFPVLIVAYMQFGLNSGFWWSTGFYFVVQILDGNVIVPVI 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               + +  +     ++      G  G+F    L  L+  I +  
Sbjct: 301 FSEAVSIHPIAIIMAVLVFGGLWGFWGIFFAIPLATLVKAIVEAW 345


>gi|300113927|ref|YP_003760502.1| hypothetical protein Nwat_1251 [Nitrosococcus watsonii C-113]
 gi|299539864|gb|ADJ28181.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 383

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 49/327 (14%), Positives = 107/327 (32%), Gaps = 19/327 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P++ ++++ ++  PI S+   + +      A++    ++ +FI  + +  Y    
Sbjct: 40  QAVLVPLVFSILVSYSLDPIVSALE-RVKIPRWLGAML----LVTVFIGLVGYSSYTLRD 94

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGG----------MWASELWTKHLSHPQSLKILS 137
           +  EL+ K+  A Q      +     P                E          + K   
Sbjct: 95  QATELLDKIPQAVQTLRYSLQAEPARPREGIIQKVQEAAEKIQEATKPADDGHDTHKPGV 154

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH--L 195
                      +  +     +  + +   +  +++ +  F   G +  ++L  +      
Sbjct: 155 MKVEIVEPGLKLGEYVWWGSLGAMAFVGQVATVVMLVLLFLTSGDTYKRKLVKITGPTLS 214

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   +   IR     + I     GLV   A+   G+      G+I  + + IP
Sbjct: 215 KKKVTVEILDDINIQIRRYLFVLVISGAFVGLVTWGAFLWIGLEQAALWGLIAGVASTIP 274

Query: 256 GGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              P    A +    L   G +     +     +   I    L P+L      L  +  F
Sbjct: 275 YLGPAMVFAATTIVALAQFGTLTMGLTVGAISLLITGIQGYWLTPWLTSRTSSLNAVVVF 334

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV 340
            GL+      G +GL +   ++ +I V
Sbjct: 335 VGLLFWGWLWGPIGLIVATPILIIIKV 361


>gi|297570117|ref|YP_003691461.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926032|gb|ADH86842.1| protein of unknown function UPF0118 [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 379

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 64/342 (18%), Positives = 129/342 (37%), Gaps = 5/342 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
             ++     ++  +    F + ++ A ++     PIY     +      F ++     V+
Sbjct: 6   FLFLFAISSVLVGWLFWPFISVLVLAYLLTRLFRPIYQLINRRL--PDFFASLATCTLVV 63

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH-LSHP 130
            L  +PL+F       E   L +    A        R     P  +   E       S  
Sbjct: 64  LLVFIPLVFFVMALAQEAHGLYNWGRGAGATLGARLREFQTTPLFVHLQETAALLGYSLQ 123

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 +      +   F+   AS +    + + L     I+ +FF   +   +   +  
Sbjct: 124 PEDIGRALAGTARDLGLFLYDQASTWAANLMMFVLGFFLTIVTIFFLLMEHDRLLNYIFR 183

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   L     +++     ++  +  +G  I A+ +G++ G  +W   +   V  G I A+
Sbjct: 184 LSP-LPDDQERQLFAKFDEITGAVLIGNGICAVIQGIIGGLIFWAFNLGPPVLWGAIMAV 242

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +A +P     +      ++LLIKGN+ +A  L +   I    ++  L+P LVG   K+  
Sbjct: 243 LAFLPIVGIGLVMVPTVLFLLIKGNLVDAILLAILYGIITLFIESLLKPKLVGDRAKMHI 302

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L  F  ++GG+ T G LG+  GP+++     + +  +     
Sbjct: 303 LLVFLSIIGGLNTFGFLGIIYGPLIVTAFLTLAEIYLANYDR 344


>gi|289548782|ref|YP_003473770.1| hypothetical protein Thal_1011 [Thermocrinis albus DSM 14484]
 gi|289182399|gb|ADC89643.1| protein of unknown function UPF0118 [Thermocrinis albus DSM 14484]
          Length = 353

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 142/346 (41%), Gaps = 4/346 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +    +++ LY ++ F  PVL A++      P+ +  + +  +S    A +  V  
Sbjct: 10  FILVLTFLFLMLVLYIIRPFIVPVLWAVVFTLALHPL-NHLLRRYVKSRFLSAFLLVVLT 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L ++P+ FL +  + +   +V+ +V   Q+       +S + G    S +        
Sbjct: 69  LLLIVIPVSFLGFMLVEQTLHMVNYLVSFAQNHT-YEELISLLKGHPLFSTVQQWLDYLG 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                            ++ ++ S                +I LFF  RDG         
Sbjct: 128 TQQVRDVFISGVQRVSQWLLQWISSLIGTSGVILFKSFVFLITLFFLLRDGDRFLDFAKR 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                 P     I   V + I +T  G   +A+ +G++    Y++AG    V LGV T  
Sbjct: 188 FLPID-PHDTDMILYTVYRTILATVYGTVGVAVLQGILSFVGYYVAGFDYAVLLGVATFF 246

Query: 251 MAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + +P  G    +   S+YLL++G +     L ++  + +  +D  LRPF++   + LP+
Sbjct: 247 ASFVPPFGTASVWFPSSVYLLLQGKMTEGISLLIYSFLVISSLDNFLRPFIMKFGVPLPY 306

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +  FF  +GG+   G +GLFIGP++ + +  +         +  +K
Sbjct: 307 VVLFFSTLGGLAAFGFVGLFIGPMIFSTMFSLLIIYERRFLKASDK 352


>gi|312109941|ref|YP_003988257.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
 gi|311215042|gb|ADP73646.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
          Length = 372

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 113/343 (32%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I+ +  ++LY++     P + A  I F   P+     +K +       V+  +
Sbjct: 11  RFLLVIAIVVLGAIALYYVSTVIYPFIIAFFIAFFINPLVDFLETKAKMPRWLAVVVTLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L    +  L    +   + L + V    Q  +                +L     +
Sbjct: 71  VLFALVAGLVTLLIAEIVSGTQYLANVVPENFQKLVKYIETFFAQQIIPLYHDLAALFKN 130

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              S +      ++  G             + +   +      +     IF ++A FF  
Sbjct: 131 LDASQQDTIMNNIQAVGTQIATTVGQFTQRVLQNIPQLLTWLPNAATVFIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D + ++  +  +         K++   + K +         +     +++     + GV
Sbjct: 191 KDWYRLTGMVQKILPAKAHKSGKRVFLDLKKALFGFIKAQATLISITTVIVLIGLLILGV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +I  ++ ++P           I                   I + +  + + P
Sbjct: 251 DYAITIALIIGLVDILPYLGTGIVFVPWIIYAAISGNVPFAIGLGVLYIIVLVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G + +G LGL +GPV + +I  +
Sbjct: 311 KVLSSSIGLDPLATLVALFVGFKLIGFLGLIVGPVTLVIIRTL 353


>gi|166369036|ref|YP_001661309.1| hypothetical protein MAE_62950 [Microcystis aeruginosa NIES-843]
 gi|166091409|dbj|BAG06117.1| hypothetical protein MAE_62950 [Microcystis aeruginosa NIES-843]
          Length = 358

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 123/328 (37%), Gaps = 5/328 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ F   +L   I+    +P++          +    V+ T+  + + I P+  +    
Sbjct: 27  LLRPFLTMILWGAILAIAWYPLFLWLKKLLAGRAKLATVLLTLLCLGIIIGPVSGIAAVL 86

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              ++ +   +        P P  ++  P          +  S      +          
Sbjct: 87  AGNLRTMAEYIDTGAVLIPPPPADVATWPLIGERIAGLWQQASDNTGQFLQRFEPQLKEL 146

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                  A+  G+  L +  SI+              ++++ ++ L E + P     ++ 
Sbjct: 147 GKISLSLATSTGLTVLKFIASILIAAA----LTLSAKNLTRPMNRLAEKIAPGRGIALAG 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +    +R+   G+  +AI + L++G      G P+   L ++T I+ ++  G  +     
Sbjct: 203 LTASTVRNVSRGIIGVAIIQSLLIGIGLVTVGTPAAGLLTLLTLILGILQIGPGLIVLGA 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I+  +      A    LW  I   +VD  L+P L+G  + +P +    G+ GGV   G+
Sbjct: 263 LIHAWVTLPNSIALLFTLW-MIPATLVDNFLKPILMGRGLPIPMVVILLGVFGGVIAYGI 321

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           +GLF+GPVL+ L   + +  I       
Sbjct: 322 IGLFVGPVLLGLCYELVRAWIGEDSPEP 349


>gi|115374275|ref|ZP_01461560.1| hypothetical protein STIAU_0634 [Stigmatella aurantiaca DW4/3-1]
 gi|310818211|ref|YP_003950569.1| hypothetical protein STAUR_0938 [Stigmatella aurantiaca DW4/3-1]
 gi|115368696|gb|EAU67646.1| hypothetical protein STIAU_0634 [Stigmatella aurantiaca DW4/3-1]
 gi|309391283|gb|ADO68742.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 375

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 94/309 (30%), Gaps = 18/309 (5%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P+ S    K          +  ++ + L    L       + + + LV +     +   
Sbjct: 54  SPLVSWLQRK-GLRRGVAVALVFLTGLGLVAALLTTFVPMLVQQGQSLVREAPDYIEQLK 112

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                           + W + L     L        +                  L + 
Sbjct: 113 H---------------QRWVEQLDARYDLIARVSAETRQRLPGAAMPML-GVVTDILHHL 156

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
            + I +++   FF   G  +  +           YW+ ++  +   + S   G   I++ 
Sbjct: 157 AAFITVVVLTLFFLCFGKEVFDKALLWLPPPERGYWRGLALRMHHTVGSYVAGAFCISLI 216

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFL 283
            G V      L GVP  V LG+  A++ ++P   P+     V       G          
Sbjct: 217 GGGVTMVTLLLLGVPYFVPLGLAMAVLGLVPFLGPLLGGVLVVATAYASGGNRVGLIALG 276

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +   + +  L+P +    +++  L     ++ G    G+LG  +   +   + V+ +
Sbjct: 277 VFLLYQQVENHLLQPIIQRHTLRMSPLLIALAMLVGTAFAGVLGALLALPVAGAVQVVAQ 336

Query: 344 ESIMAIKEN 352
           + +    E 
Sbjct: 337 DRLARRHER 345


>gi|228474247|ref|ZP_04058982.1| putative membrane protein [Staphylococcus hominis SK119]
 gi|314936782|ref|ZP_07844129.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
 gi|228271606|gb|EEK12953.1| putative membrane protein [Staphylococcus hominis SK119]
 gi|313655401|gb|EFS19146.1| putative membrane protein [Staphylococcus hominis subsp. hominis
           C80]
          Length = 361

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 106/334 (31%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +              +   + ++ +  + + F+    
Sbjct: 36  IIGSVFLPFLLSGFLFYICLPFQTLLEKW-GFPRWASILTIFIVLIAIIAIVVAFIAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+       +    V  +  +              L    + KI S     ++ 
Sbjct: 95  ISNVNNLIKATPTLQRDAEQVVNFSLN----------QMDKLPSDVTAKINSAMKSISDS 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   +  +    +     +I +   L +  +D       +    +     +   + +
Sbjct: 145 LTGILANSITYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKVFVVDLLK 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   ++   G++L   Y L G+P    L +   +  +IP   P    A 
Sbjct: 205 DLNYTLKSYIQGQVTVSFILGIILYIGYSLIGLPYTPLLVLFAGVANLIPFLGPWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I         + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  I +      +   +K +S+
Sbjct: 325 TLILIAVPLYAVLKTIARNVFKYRQRIIDKANSD 358


>gi|226304691|ref|YP_002764649.1| hypothetical protein RER_12020 [Rhodococcus erythropolis PR4]
 gi|226183806|dbj|BAH31910.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 364

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 97/320 (30%), Gaps = 16/320 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                 + + ++  L   +G    ++ AL +     P+      +          +  + 
Sbjct: 37  AAAGVAVTYAVIEVLLAARGMLILIVVALFLAVGIEPMIVWLERR-HFRRWIAVTVVLLG 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +  + L+      + + ++  S       H       ++D+       +  T  L  
Sbjct: 96  IAVMLALFLVAAITPLVEQGRQFASHAPELLTHIRDRYPIVNDLDEKYHLEQHLTTQLD- 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                              +       G            + +   +F  D   I   L 
Sbjct: 155 --------------GSGSALATGLLGAGRAVFSAVADAGIVAVLTTYFLIDYPRIRTNLY 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L  H        I   +   +    LG  +I++   +   +   +  VP  + L ++ A
Sbjct: 201 RLVPHSRRPRAIAIGDQILAGVGGYVLGNVLISVITAVCTFAWLLIFDVPYPLILALLVA 260

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP         +   + +  ++  A     +      + D  L P ++G  + +P 
Sbjct: 261 LLDLIPIVGSTIAGVIVALVSLTVSVPTALATVAFFIALRLLEDYLLVPKIIGKTVAVPA 320

Query: 310 LPTFFGLVGGVRTMGLLGLF 329
           L T   ++ G   +G++G  
Sbjct: 321 LVTVVAVLLGGALLGIVGAL 340


>gi|220908099|ref|YP_002483410.1| hypothetical protein Cyan7425_2702 [Cyanothece sp. PCC 7425]
 gi|219864710|gb|ACL45049.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 358

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 113/344 (32%), Gaps = 22/344 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFL----KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++   ++R+++   +   L  L    +        A I+             K      F
Sbjct: 26  ISTNALVRFLLFAAVGWVLVQLINHFQYVIFVFAFAAILAILLNYPVQYL--KGFLPRRF 83

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  +  +       L +      +++++ + +             +         S 
Sbjct: 84  ALGIVVLLSLAAIFFLALGIGVTIADQLQDIAATLTQTITSLQTPLNQVQAFLNQRNISL 143

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             +      QSL     ++L +     +  + +               +++  FF   D 
Sbjct: 144 DLSPLQQQLQSLVFNGASWLVSYIPTLLGSYVTLI------------IVLVITFFMLIDE 191

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++ Q +  L        + +    V +  +    G  +I+   GL     + +  +P  
Sbjct: 192 GNLWQFILRLVPQAQRDRFDR---SVHRSFQGFIRGQLLISFLLGLATYIVFVIFRLPFA 248

Query: 242 VALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L ++ A+  +IPG           + +L++   + A  +     I   + D  L P +
Sbjct: 249 LVLSMVVAVFDLIPGIGATLGVTLACLIVLLQSGWWVALQVLAICVILQQLQDNLLAPRI 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +   ++L  L  FF L+ G +  GLLG+F+   +   I    + 
Sbjct: 309 MQSTVRLHPLVVFFALLVGTQIAGLLGVFLAVPVAGAIVSFLQI 352


>gi|254422589|ref|ZP_05036307.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190078|gb|EDX85042.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 360

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/340 (16%), Positives = 119/340 (35%), Gaps = 11/340 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    ++++   + +     +  + A ++ F    + S  I K   + ++  +I  +  +
Sbjct: 20  LTIFNLWLLFKGVQYFHSLLSIFVVAALLAFLLDYLVS-LIQKTGCARSYSVLIIVLLAL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L ++  + +    + ++ EL +++      G      L          +      +   
Sbjct: 79  SLIVLISMTVVPTLLDQLTELTTQLPGWLASGSQQLELL------DTEIDKLESADNIDI 132

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S      T L    +  +P     F + F D    I+   +   +    G    Q L   
Sbjct: 133 SDLTNQLTDLLPVELKLLPGQLVSFLLGFTDKLFDIVLTTVLTLYLLLYGKPFWQGLYKW 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +       ++S  +     + F G  +IA   G+ L   +++  VP  +  G+   + 
Sbjct: 193 LPNDLGE---QLSAALSVQFENYFFGQAVIAALMGVTLALVFYILQVPFWLVSGLGIGVC 249

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP G  +    VS  L+  G+    T +     I   ++D    P ++G  + L  + 
Sbjct: 250 VFIPFGDWLGMATVS-LLVGIGDPLLGTEVLAACIITDQVIDNVFTPRILGDAVGLNPVW 308

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L+ G +  GLLG  I   L A    I     +A  E
Sbjct: 309 VLLSLLVGAQVDGLLGAVIAVPLAATFKQIVDSFGIADLE 348


>gi|311745918|ref|ZP_07719703.1| putative transport protein [Algoriphagus sp. PR1]
 gi|126576125|gb|EAZ80403.1| putative transport protein [Algoriphagus sp. PR1]
          Length = 403

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 43/365 (11%), Positives = 122/365 (33%), Gaps = 26/365 (7%)

Query: 5   MLNPQGIMRWMIMFII----LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + + ++   ++ +     +V L    GF  P+  A+++     P+     S    S  
Sbjct: 1   MKSKEILIILTLIVVGTYFSIVGLIEAGGFLKPLAIAVLLTLICIPLCRKLES-LNFSKG 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A ++ +  +  F+   + +        +        A        + +++  G     
Sbjct: 60  LSAFVSVLLSLLAFLSFFVIISAQVANVSERWPEIKSKAKPKLEGFQQKVTEKTGLNLEQ 119

Query: 121 ELWTKHLSHPQ-------------------SLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           +L     S                                    +    +      M F 
Sbjct: 120 QLGMFGFSGQDSGAKPNEESEKRLDSNQSTDKANSDSQPSPEKIVSNASQEVGVIVMNFF 179

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            +  S +  ++ LFF       +   +            +++     ++  +  +G  I+
Sbjct: 180 SFLSSSVLTLVYLFFLLLYRNKVKLSILKFFSEENQKEAEEVMSHTVELGLNFIVGRFIL 239

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNAT 279
            +   ++      ++G+ + + + VI A+++++P    I    ++I + +     +    
Sbjct: 240 IVFLAIIYSIGLSISGIENAILISVIAAVLSLVPFIGNIIGYVLAIIMAVFAGAELGGII 299

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + L   +  F+    L P++VG  +++  L T   ++ G    G++G+ +   +  +  
Sbjct: 300 GVSLTFGLAQFVESYILEPYVVGSKVEVNPLVTIMVVILGGAIWGIIGMILSIPIAGIAK 359

Query: 340 VIWKE 344
           +I+  
Sbjct: 360 IIFDA 364


>gi|146313035|ref|YP_001178109.1| hypothetical protein Ent638_3398 [Enterobacter sp. 638]
 gi|145319911|gb|ABP62058.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 360

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 68/346 (19%), Positives = 144/346 (41%), Gaps = 5/346 (1%)

Query: 4   TMLNPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               PQ +   +I+  ++  +++ L  F   ++ A +I   +WP+Y++   K        
Sbjct: 7   PRDLPQTLFGILIILTLLSSAIWILHPFLLSIVWAGLIVIATWPLYTTVQRKLGGRRKLA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  V +  +F++P++F         ++L+  ++  ++  +P   +L+ IP        
Sbjct: 67  ITVMMVFLTAIFLLPIIFSAGMLSTLFEDLLQWLMHLDKSHLPSLDFLAHIPIVGEHLHR 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L H  +  I          I  +    ++    F    ++ + M++A   FY  G 
Sbjct: 127 KWLALIHENAESIFDT---LKPWITKVIVILAQGLSQFGALFVNGLMMLLACLAFYLYGT 183

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +I++ L      +  A       +    I++  +G+ + A+ + +  G    +  +PS  
Sbjct: 184 TITRGLRQFAFRIAGARGDNAVLLAGTTIQAVAMGVVLTAVIQSIFAGVGLAVCHIPSSA 243

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L  I  ++ ++  G  I      I+L  +G  +N   L +W  I   + D  L+P L+ 
Sbjct: 244 LLTGIIFVLCLMQLGPVIIMLPALIWLFYQGEHWNGAVLLVWTVIAGSL-DNILKPILIK 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                  L    G++GG+ T G++GL IGPVL+A+   +    +  
Sbjct: 303 RGADTSLLLIMTGVIGGMLTWGMIGLMIGPVLLAVSWKLLSTWVSE 348


>gi|289523976|ref|ZP_06440830.1| putative AI-2 transport protein TqsA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502632|gb|EFD23796.1| putative AI-2 transport protein TqsA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 393

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 101/333 (30%), Gaps = 27/333 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++ ++ +      L   +    P++ A ++ F   P       KK         +A   +
Sbjct: 63  LLSFLCIVAGGAVLRSARSVVMPLVIAWLLSFIFKPALLKLEKKKIPR-----GLAVSLI 117

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + LF V  L  F      +   V+         + +   +                    
Sbjct: 118 LTLFFVICLLAFTLLYRRILPFVNAFPNYYGRLMKIIEEIGQKTDLPTDL---------- 167

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     L+ +    +           +    +   +++ L F      + +++L  
Sbjct: 168 ---------LLEFDLGRRLAPLLFALPGKVITLISNFFLIVVFLVFILLGTPASTERLRR 218

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     ++I   +   I    L   II+   G+ +  A  + GV   V  GV+  +
Sbjct: 219 AFSLTTAERVQQIINSISYQIGRYLLTTVIISASTGVAVWIALSVIGVDFAVNWGVLAFV 278

Query: 251 MAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +  IP    +  +   I + +     +I  A    +   +    +   L P +VG  + +
Sbjct: 279 LNFIPYVGSLIASIPPILVALVQFYPDIKPAITTAIVLLVIQMSIGNFLAPKVVGDALNI 338

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +     L+      G +G  +   +  ++ +
Sbjct: 339 NPIVVLLSLLFWGWLWGGVGAVLAVPIAVVVKI 371


>gi|256003346|ref|ZP_05428337.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|255992636|gb|EEU02727.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|316940232|gb|ADU74266.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 1313]
          Length = 360

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 114/341 (33%), Gaps = 2/341 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +   L  + ++ +    I ++    L  +FAP L A  I     P+    + K +    F
Sbjct: 3   KRIKLVIRLVLIFGGTVIGILLGLRLAIYFAPFLIAFAISSMIEPVVRFLMKKLKFRRKF 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+++ +  + +  + LL LF     E+  L S      +        L +   G+    
Sbjct: 63  AALVSLLLGLSMIAILLLMLFSKLYNEITSLSSSQPEFWKEAYQNISNLIN--RGLNIYF 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++   S  + S +   ++ +D   +      +      + I   I++ +F   D 
Sbjct: 121 GLPSEVTAQISNMVSSLSNSVSSLVDSFVKGIYNTAISIPQMVIFIFVTILSTYFISSDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   +              I   +   +        I+       L   + + GV   
Sbjct: 181 DRIYDYIKDNVPDALLNKIIDIKDSMFTALFGYVKAQLILMTITFCELSLGFTIIGVKRP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LG++ + +   P                           L   + + ++ + + P +V
Sbjct: 241 ILLGLVISFIDAFPVLGTGGVLVPWAIYEFLTKDIRMGVSLLILYVIVLVIRQMIEPKVV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G  I L  L T   +  G++  GL GL +GP++  +   I 
Sbjct: 301 GEQIGLHPLMTLITMYLGMKFFGLPGLILGPIVTLIFKNII 341


>gi|85716929|ref|ZP_01047893.1| hypothetical protein NB311A_09266 [Nitrobacter sp. Nb-311A]
 gi|85696208|gb|EAQ34102.1| hypothetical protein NB311A_09266 [Nitrobacter sp. Nb-311A]
          Length = 355

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 89/291 (30%), Gaps = 21/291 (7%)

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           S  +    ++++V  + +  L         ++ ++ +++  A + G              
Sbjct: 73  SRGWALTASSLTVAAVIVAILSLFGTQLAGQISDVFARLPDAIEAGGERL---------- 122

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                         +     +  +   G   +    +  G   +     ++ +I+   + 
Sbjct: 123 -----------GIHNAFEQIKEAVSGEGGGQLLSRVANLGYTAIGVATDLVLIIVIAVYL 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D       +  L              +    +R  FLG  +  +  G++ G A+W  G
Sbjct: 172 ATDPRLYRAGMIKLFPPEQHERVGDALDVTASALRLWFLGQLVSMVLVGVLSGVAFWWIG 231

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +PS + L ++      +P   P+     ++   +  +        +            + 
Sbjct: 232 LPSPLGLALVAGATNFVPMIGPLVGAIPALLFAVTQDFGTVLWTMVAVLAIQQFEGNLIT 291

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P +    + +P      G+       G+ G+ +   L   I V+ ++  + 
Sbjct: 292 PMVQRRAVDIPPAVMLLGIAVFGLLGGIAGVILAVPLTVAIMVLVQKLWIR 342


>gi|298506490|gb|ADI85213.1| membrane protein UPF0118 [Geobacter sulfurreducens KN400]
          Length = 350

 Score =  112 bits (281), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 108/331 (32%), Gaps = 12/331 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR            +   ++L++ +F     + VL++L+I +   P      +K      
Sbjct: 1   MRPRDAAHIAWFLAITFGLVLLAGHFAVHSLSAVLTSLVIAYLLNPAMKFMEAK-GLGRL 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +++    ++ L+ L  Y   +++     V     +   V           +  
Sbjct: 60  PAIAVLYLAIAVGILLALILLIPYLSHQLEAFPRAVPRYVDNLQLVMETWKGRLTPYYGG 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E  T  ++  +         L   G   + R              +++   I +FF    
Sbjct: 120 EEGTWLIARAEESLKKLALELTGKGYQQLTRAFFG--------LFNLVLAPILVFFMLYY 171

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +     H     ++++   + + +    L   +  +  G++   A +  G+  
Sbjct: 172 KDFVKDLVLRFVPHRERPSFREMGGRIKRSLERFVLAQLLDCVIVGILSALALYAIGIEF 231

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL---WGAIELFIVDKTLR 297
            +  G++    +++P    +        +        +    +   +  I + I    ++
Sbjct: 232 PLLNGLVAGFASVVPFVGVMVAVIPPALIGYAETGDMSVIPLVCAAYFVISVIIEGNLIK 291

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           P L+ G ++L  L   F L+     MG  G+
Sbjct: 292 PLLMRGTLRLNPLAVIFVLMAMGELMGFWGV 322


>gi|296167423|ref|ZP_06849824.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897232|gb|EFG76837.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 382

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 105/352 (29%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +  +L  +  L+    PVL AL++     P+      +          +  +
Sbjct: 23  RLLVILFALLALLWVVKKLEVIIVPVLVALLLSALLLPVVDWLDRR-GLPRGGAVALVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   L    L F+    +  +  L  +V  + +                W  +       
Sbjct: 82  TSFSLLGGILAFVVNQFIDGLPGLTEQVTRSIESIRR------------WLIDGPAHLRR 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N    +   A        +   + + ++  L FF   G +I   +
Sbjct: 130 EQIDNAGNAAIEALRNNQAKLESGALSTAATITELVTAAVLVLFTLIFFLYGGRNIWAYV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +          +  R     +        ++A+ +   +G+   + G+P  + L  + 
Sbjct: 190 SKIFPAHVRDRVSEAGRAGYGSLTGYVRATFLVALTDAAGVGTGLAIMGIPLALPLASLV 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       +  L+   +  A            +    L+P ++G  + +
Sbjct: 250 FLGAFIPLIGALVSGLLAVVVALLAKGMVYALITLGLLIAVNQLEAHVLQPLVMGRAVSI 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L     +  G    G++G  +    +A +    +  +      + +  + 
Sbjct: 310 HPLGVVLAISTGGVLAGIVGALLAVPTVAFLNNAMQVLLAPDPAAEAEKQTE 361


>gi|86145809|ref|ZP_01064138.1| hypothetical membrane spanning protein [Vibrio sp. MED222]
 gi|85836508|gb|EAQ54637.1| hypothetical membrane spanning protein [Vibrio sp. MED222]
          Length = 366

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 126/337 (37%), Gaps = 5/337 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L ++PL
Sbjct: 24  LVYWCFAILRPFILLVIWGAIIATALYPVAVAISNKTGMSKGKASALLSFIGVLLLLIPL 83

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L         +L++ +             L DIP           H S       ++ 
Sbjct: 84  VALSSGIYTSASDLMTGLQDGTLSLPKPKESLQDIPLVGERVYAALVHASSNIEGVFITY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                     +       G  F+ + +S I        F  +       +  L   L   
Sbjct: 144 ADELKVFASKMASILGSLGGGFVQFIISTIIAGA----FMSNADKCQTGVTHLVVRLTDG 199

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I    
Sbjct: 200 KGVELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAALWALAVLLVAIIQLPP 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++     IY+    +   A+   +W  +     D  L+P L+     +P L    G +G
Sbjct: 260 ILALLPAIIYMFSVESTLAASLFLVWCILVSG-SDAILKPVLLSRGSHIPMLVILLGALG 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+   G++GLF+G V+++L   +    +   ++N+++
Sbjct: 319 GMAMSGIVGLFVGAVILSLSYELMMAWLGLEEKNQQE 355


>gi|65320647|ref|ZP_00393606.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
          Length = 350

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 11  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  +L +      ++  L+  +              +   G         ++L+
Sbjct: 70  IVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHE----IERAARRFGESNLLGKIQENLN 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 126 IDVASMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 186 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 246 MIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 306 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 341


>gi|289580082|ref|YP_003478548.1| hypothetical protein Nmag_0398 [Natrialba magadii ATCC 43099]
 gi|289529635|gb|ADD03986.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 425

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 112/346 (32%), Gaps = 15/346 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +   L+ L  +  +   VL  +++ +   P                A+      +
Sbjct: 17  LTVVAVVAALLGLLVILPYLQYVLLGVVLAYILRPAQRWLERYTG--PLIAALTLVAVAI 74

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++PL ++      E   LV  +         +   +      +   E +  +     
Sbjct: 75  LAILLPLTYVLIVAFREALGLVGAIQNGQLDIEAIESQIEATGYSIDVVEFYQTYQEP-- 132

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                        G+  +   A           + +   +  LF   RDG   ++ +  +
Sbjct: 133 ----------IATGLQGLAMSALDIAGGVPGILIGLTVTLFVLFALLRDGSEFAEWVTRV 182

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + +S +   +  S  +G   +A  + ++LG    L  VP+ V L V+T + 
Sbjct: 183 LPVEDELLSELLSELDQLMWASV-VGNVAVAAIQAILLGIGLALLEVPAVVLLSVVTFVF 241

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A++P              L+    F    + +     +   D  +RP L+G         
Sbjct: 242 ALLPLIGAFGVWVPVSLYLLATGQFVVAGILVAYGSIVSASDTYIRPALIGRTSAFNSAI 301

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              G+ GG+   G +GLFIGPV++    +             + ++
Sbjct: 302 IVVGIFGGLIIFGAVGLFIGPVVLGGAKITLDLFARERAAGTQPVT 347


>gi|294141912|ref|YP_003557890.1| hypothetical protein SVI_3141 [Shewanella violacea DSS12]
 gi|293328381|dbj|BAJ03112.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 371

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 64/343 (18%), Positives = 138/343 (40%), Gaps = 5/343 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +I  + +     +K F  P++   II  T +P+ S    K   S    + + T+ 
Sbjct: 20  VIKIAVIFLVAIWCFEIIKPFIMPIVWGGIIAVTLFPLVSQLSKKSSLSLARASALVTLV 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L ++P        +   ++ + ++        P    ++++P        +    S 
Sbjct: 80  SLALLLIPAFLFSGALVSSTQDFIGEIQQGTLVIPPPKESVAELPLIGNKLYSFWDQSST 139

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +  I + +      +         FGM  L + +SII   +       +    S+   
Sbjct: 140 NLASVIKTHSVEIKAVLAKAVSALGGFGMTVLQFVISIIIAGV----LMTNAKGASEVCQ 195

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +   L  +Y K+++++    +RS   G+  +A  + ++ G    + GVP+     ++  
Sbjct: 196 KIAIRLAGSYGKELTKLSVATVRSVVQGVIGVAFIQSILSGIGMGVVGVPATGIWMLVVL 255

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++A++     +    + +Y+    +   A    +WG +     D  L+P L+G  + +P 
Sbjct: 256 LLAIVQLPPILILAPIMVYVFSVESTSVAIMFMVWGILV-SASDAILKPMLMGRGVDIPM 314

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    G +GG+   G++GLF+G V+M L   ++   I A  E 
Sbjct: 315 LVILLGAIGGMLMSGVVGLFVGAVVMGLGYKLFIAWIDAEPET 357


>gi|258510443|ref|YP_003183877.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477169|gb|ACV57488.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 375

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 106/344 (30%), Gaps = 4/344 (1%)

Query: 1   MRETM-LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           MR  +    + ++    +   +++L  L  +  P +   +      P+      +     
Sbjct: 10  MRRYLWRVLEIVILLAFIAAFILALASLMQYILPFVIGWVFAILLIPVVRWLERR-GMKR 68

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               ++     + L +     +    + E    VS   +  +  +       +I      
Sbjct: 69  LPSVLLVLGVSVLLIVAISAGIIIGALREATSFVSHSQVFFRVQLAQIE--GEIENSESL 126

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  +S+     +          +  I            D     +  ++  FF  +
Sbjct: 127 YGQLPPQVSNAVQSALTQFAHGLEGSVHKIITGLIGIVTHLPDTLFIAVISVVTAFFILQ 186

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               +  +   +    +      +   + +    T     I+      +     ++ G P
Sbjct: 187 RRERMLARFYRMMPPGWAPKLNAVFEDMERAFLGTIRVQFILMCLSMFLGMIGMFVLGFP 246

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + LG++  +  ++P       T     + +           L   + + I+   + P 
Sbjct: 247 YAILLGILFGLAGLVPIVGSAILTVPWAIVALITGHVAVAIKVLALQVVISIIRHAVEPK 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++   + L  L T FGL  G + MG +GLFIGP+L+     + +
Sbjct: 307 ILADSVGLDTLATLFGLYVGFKVMGFIGLFIGPILLIGAKGLLR 350


>gi|145219109|ref|YP_001129818.1| hypothetical protein Cvib_0294 [Prosthecochloris vibrioformis DSM
           265]
 gi|145205273|gb|ABP36316.1| protein of unknown function UPF0118 [Chlorobium phaeovibrioides DSM
           265]
          Length = 360

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 147/355 (41%), Gaps = 7/355 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   + I+  +++FI  +    ++ F   +  A I    + P+Y+  +       +  A
Sbjct: 3   SLKANRVILLVIVLFISAIFFVMIRYFLMAIFLAAIFSALAMPLYNRILGWVGGRKSLGA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  + +  + ++PL+ L     ++  E+  +     +  I        +    +  E  
Sbjct: 63  AVTMMIIFIMGVLPLVALLGIVAIQAVEISRQAAPWVRQMIEPAFLDQQLQSLPFYPE-- 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +   +   +   T + +     +      F    ++        +  +FFF RDG S
Sbjct: 121 ---MVIYREDIMQRVTEVASKTGTVLFNTLFSFTYSAVNELFLFFIFLYTVFFFLRDGRS 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + +      L  A   ++      V R+T  G  I+   +G + G A  +AG+ S + 
Sbjct: 178 LLETILYYLP-LSDADQHRLLDKFLSVTRATIKGTMIVGTVQGTLAGLALHIAGIESALF 236

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G +  +++++P   P + +   +I L   G+   A  + L+ +I +  +D  LRP LVG
Sbjct: 237 WGTMMTVLSVVPVLGPPLVWVPAAISLAFVGHYPQALGVLLFCSIVVGQIDNILRPILVG 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              +L  L  FFG +GG+   GL G  IGP++ AL   +W+    A  ++   I 
Sbjct: 297 RDTRLHELFIFFGTLGGIGLFGLFGFIIGPIIAALFMTVWEMYGDAFSDSLRDIK 351


>gi|209695373|ref|YP_002263302.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208009325|emb|CAQ79591.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 353

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 128/335 (38%), Gaps = 5/335 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++      L+ F   V+   II    +P+ S   +K   S   ++       + L +VPL
Sbjct: 24  LLYWCFSILRPFILLVVWGGIIATALYPVVSWGHNKFGISKGKVSGGLAFVGVLLLLVPL 83

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L         EL++               ++D P     +  +   +S      +L  
Sbjct: 84  IALSTGLYTSGSELITGYQDGTISIPKPAASMADWPVIGEKAYAFGVQVSSNLESVLLKY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                     +   A   G  F+ + +S I   +    F  +     +    + + L   
Sbjct: 144 GEEVKAIAGQLASLAGSLGGGFIQFIISTIIAGV----FMANADKCERAFIVIADRLTGE 199

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           + + ++ +  K +RS   G+  +A+ + ++ G     AGVP+     ++  ++A+I    
Sbjct: 200 HGEALTTLSKKTVRSVVQGVIGVAVIQSMMAGLGMAFAGVPAIGLWMLLVMLVAIIQLPP 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++   V  Y+        A    +W  I     D  L+P L+     +P L    G +G
Sbjct: 260 ILALLPVIFYVFSVDTTTTAVIFLIWCIIVSG-SDAILKPMLLSRGSNIPMLVILLGALG 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G+   G++GLF+G V+++L   ++   + +  + +
Sbjct: 319 GMAMSGIVGLFVGAVVLSLTYQLFTVWLDSESKEE 353


>gi|166368038|ref|YP_001660311.1| hypothetical protein MAE_52970 [Microcystis aeruginosa NIES-843]
 gi|166090411|dbj|BAG05119.1| hypothetical protein MAE_52970 [Microcystis aeruginosa NIES-843]
          Length = 365

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/345 (16%), Positives = 125/345 (36%), Gaps = 13/345 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  +++     +L+   +  ++A ++ F           +   + +    I  +  +
Sbjct: 20  LLFLNGWLLFQLFSYLEPLVSIFVTASLLAFVLDVPIKLLQRR-GVNRSGSIAIVFLIAL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + IV  L L    + ++  L++ +    + G    + L             T+  +   
Sbjct: 79  LILIVLGLILIPQIVEQLSSLINSLPQWIESGTEQIQNLEKW--------DKTQKYAIYI 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I   +   TN +  +      F +  ++  L+I+F+++   F    G  I + + S 
Sbjct: 131 EQSITQLSERLTNVLQTLSTQLLSFVLGTINSILNILFVLVLTVFLVLYGEQIWEGIFSW 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +  K+  I+ +   + F G TI+A    L     + +  V   +  GV   + 
Sbjct: 191 IP---APWNLKLRTIIRQTFETYFAGQTILAGILSLAQIFVFVILKVDYALLFGVAIGLT 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP  A          LL+  + +    +     I   I D  + P L+GG I L  + 
Sbjct: 248 TLIPF-ASAFAIIGISTLLMFQDFWLGLKVLTLTIIVGQINDNVIAPRLMGGMIGLNPVW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               L  G +  G+LGL I   + +++           +E +  +
Sbjct: 307 IILSLFIGGKVAGILGLLIAVPIASVLKSTIDIIRSQQREKEPVV 351


>gi|209515626|ref|ZP_03264490.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209503862|gb|EEA03854.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 370

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 129/338 (38%), Gaps = 3/338 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  + +        F   +  ++I+  T +P+              +A +  +  
Sbjct: 20  IRAGLIAILAVFCFRIFAPFLNLMAWSVILAITLYPLQVLLRPMFGGKDGLIATLIVLVA 79

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +VP   L       +++ ++       H  P    +S  P        + +  S  
Sbjct: 80  FAVILVPTYVLGLAVGDSIEKSIATFKGGGLHIPPPAESVSSWPVIGPRVYGFWQQASTD 139

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +                +    +  G   + + +++I   I + +  +   S  Q    
Sbjct: 140 LTGLAQRFAPQLKEAGLALFAMLTGLGAGLVIFFVALIIAGILMAYGEKGYRSAVQIASR 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +     P    +I+ +    IR+   G+  IA  + L++G  + + G+P    L +   +
Sbjct: 200 I---SGPEEGTQIADLCTATIRAVAQGVVGIAFIQMLLIGIGFIVMGIPGAGLLALAVLL 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++   A +    V I++++   +  AT +F        + D  L+P L+G  + +P  
Sbjct: 257 LGIMQLPATLITIPVIIFVILTDGVSTATIIFSVYIFVAGLADNVLKPLLLGRGVAVPMP 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               G +GG+ T G++GLF+GPV++A+   ++   +  
Sbjct: 317 VVLVGALGGMVTGGVIGLFVGPVVLAVGYQLFWRWVRD 354


>gi|187934848|ref|YP_001885260.1| permease [Clostridium botulinum B str. Eklund 17B]
 gi|187723001|gb|ACD24222.1| putative membrane protein [Clostridium botulinum B str. Eklund 17B]
          Length = 382

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 117/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS--KKEESSTFLAVIATVSVMCL 73
           ++  I   +  L+ F      A I+ F             K +       V+  ++ M L
Sbjct: 36  LLGKISGIIVILQPFIIGFSIAYILNFILKFYEKKLNKYSKLKAKRGLGLVLTYITAMLL 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + + F+    +  +  LV+ V             L      +  SE +   +++  + 
Sbjct: 96  VGLFIQFVLPQLIQSIIGLVNDVPKFINESTKFINKL---MLDLNISEEYLPLINNNFNE 152

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I     + TN +  +  F ++      +  L +I  I  L    +      +   ++  
Sbjct: 153 FINYIIKIATNLLPVLGSFVTKIASSIWNIVLGVIISIYLLIDKEKFCAMSKKVTYAIFF 212

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I+           +G  + +   G++      +  +P  + + VI  I  +
Sbjct: 213 KNAAEKIIEITHRSNDTFGKFLMGKILDSFIIGILTFVILTIFRIPYAILISVIVGITNI 272

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S+ +++  +   A    L   +   I    + P ++G  I +      
Sbjct: 273 IPFFGPFIGAIPSVIIILFVSPIKALWFLLIILVIQQIDGNIIGPKILGDSIGISAFWIL 332

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           F ++   + +GL+G+ IG  L A++  I KE + A
Sbjct: 333 FSILFAGKFLGLIGMIIGVPLFAVVYSIIKEIVEA 367


>gi|326386642|ref|ZP_08208264.1| hypothetical protein Y88_2536 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208957|gb|EGD59752.1| hypothetical protein Y88_2536 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 382

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 92/337 (27%), Gaps = 21/337 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++   +  +  +++Y  +     +   ++ G                       I 
Sbjct: 47  IKRAVVWIGVATLTGLAIYLAQPLLV-IFGGIVFGAMIDGGQRLLRRVLPVPRILRIAIV 105

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +   +   +F       +   +   +    Q    +          + AS +  + 
Sbjct: 106 LLGAVAFLVWLAVFAGSQLAAQAAAMPRLIATQAQKLGDIAHAHGLFVEKLDASRIAEQI 165

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                                      ++          +   ++I   +F  +     +
Sbjct: 166 AGG--------------------VGPVTQALGGLFGGFTTAFLIMILGIYFVLEPDLYRR 205

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  L        W   + ++ + +R    G  I    EG+      WL  VP    LG+
Sbjct: 206 GLAWLMPAESRDRWHDTAHLMGRALRRLLFGRLIGMTSEGIATWLLLWLWNVPMAALLGL 265

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T ++A +P        A+ I +                 I   +    + P +      
Sbjct: 266 LTGLLAFLPNIGAPISGALMILVGFSEGTHTGLYCVAVYLIVQTVDGNIVVPMVAKKTAD 325

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L         +      GLLGL +   L+A++ +  +
Sbjct: 326 LAPALVLGAQLIFGVLFGLLGLILADPLVAMLKIALE 362


>gi|126174889|ref|YP_001051038.1| hypothetical protein Sbal_2681 [Shewanella baltica OS155]
 gi|217972862|ref|YP_002357613.1| hypothetical protein Sbal223_1685 [Shewanella baltica OS223]
 gi|125998094|gb|ABN62169.1| protein of unknown function UPF0118 [Shewanella baltica OS155]
 gi|217497997|gb|ACK46190.1| protein of unknown function UPF0118 [Shewanella baltica OS223]
          Length = 369

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 102/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + IIL  +        P + +  +     P        +         +A +
Sbjct: 12  RGFAVMAFVVIILAGIKAASPIVVPFVLSSFLAVICNPAIGLMTKFRVPK-----WLAVI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       +    W+ +            + L+
Sbjct: 67  LLMGFIVLMGLWLASVVGSSVNEFSKQLPQYRVQLVEQFAWILNKLHSFNIQISKDQVLA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L     D     +Q+
Sbjct: 127 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKLHLALDDPDMRLKQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + +    +  T++++  G+++G    + GV   +   VI 
Sbjct: 187 DRFL----------------QSVNQYMVIKTLVSLATGVIVGVGLTIIGVDYAMLWAVIA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTALLYVGANMVMGNMIEPKFMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMVVKIALE 326


>gi|260584496|ref|ZP_05852243.1| membrane protein [Granulicatella elegans ATCC 700633]
 gi|260158014|gb|EEW93083.1| membrane protein [Granulicatella elegans ATCC 700633]
          Length = 365

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 114/338 (33%), Gaps = 1/338 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +   +       +P++  L++ F           + ++     ++  +++++ +  + + 
Sbjct: 28  LYTGVNAFLRMMSPIVLGLLMAFIFNVPMKHMEKQLKKIKVPPSLRRSIAILGVLFIFIA 87

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +     + +  L   VV   +    +  +  +        +            +    +
Sbjct: 88  IVVAISWIIVPTLARTVVQLGESFNYLMDFCVNWIQNSGWLQAADVERITGFINQSNIVS 147

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + +    F     +          +++  M+  L    +  + I++ L  +        
Sbjct: 148 SVVSFLGGF-TSNITGIFSNVFTILMAVFLMLNILGSKEQLQYLITRLLKVILPENRYKL 206

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            + I +I         +G  I A+  G ++   Y +  +P     GV+  +++ IP   P
Sbjct: 207 LQYIGKITLDTYDKFLMGQLIEAMIIGSLVFVTYSVFQLPYAAITGVLAGVLSFIPYIGP 266

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            S   +    +   +   A            I    + P +VG  I LP + T    + G
Sbjct: 267 FSACMLGAIFIFTVSPIQALISIGVFYGLQLIEGNFIYPRVVGNSIGLPTVLTLAAALIG 326

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               G+LGL     L A+I  + KE ++  +E  + + 
Sbjct: 327 GNLFGILGLIFFTPLCAVIYHLVKELVIKREETLKLLD 364


>gi|291545214|emb|CBL18323.1| Predicted permease [Ruminococcus sp. 18P13]
          Length = 450

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 99/343 (28%), Gaps = 30/343 (8%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGF-------------FAPVLSALIIGFTSWPIYS 49
              L P+G+  ++++   ++  + L  F              APV + L+  +   P   
Sbjct: 16  RYDLFPRGLAAFLVLACAIIFYFLLLNFDKVQSFFEDVFRAIAPVFTGLLFAYLLNPAVV 75

Query: 50  SFISKK------------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
                             +   T   +   V+V+ +  + +L            + +   
Sbjct: 76  MLEKHLAKPLNRRFKNSSKGKKTARIISTFVTVIAVVCLIVLLFVLVVPEVAGSITAIAG 135

Query: 98  LANQHGIPVPRWLSD-IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
                       ++  +      S L++   ++              N       + +  
Sbjct: 136 ELPNDLGEFTDTVNQKVQNNSRLSALYSLVSNYLAEPLENWANSGILNNASVWVGYLASG 195

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI----VPKVIR 212
            M   +   ++   +I  F+         +Q   +   L                 +   
Sbjct: 196 IMGAFNLVYNLCVGLIICFYLLIGKERFMRQGGKILYVLLKPNRADWILHRLNGANRTFS 255

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           S  LG  + +I  G++      +   P    + VI  +  +IP   P      S  L++ 
Sbjct: 256 SAILGKILDSIIIGMLCFIGVVILRTPYPALIAVIVGVTNVIPFFGPFIGAIPSTLLVLM 315

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            +   A    ++  +        L P +VGG I LP   + F 
Sbjct: 316 HDPVKALYFVIFIVVLQQFDCNILDPKIVGGSIGLPAFWSLFA 358


>gi|239948342|ref|ZP_04700095.1| permease [Rickettsia endosymbiont of Ixodes scapularis]
 gi|239922618|gb|EER22642.1| permease [Rickettsia endosymbiont of Ixodes scapularis]
          Length = 351

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 121/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S  F + I
Sbjct: 1   MNRTAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISDKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +     +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYRQIFTFINNIPKYKNYLQAEI-----LPPIMAKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   +        L P ++G 
Sbjct: 236 ILTGFLVIIPFIGTFISFLLTLIIGYLTFGMTAKLLYIMIIYLVGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    ++ +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIVGITKILLLNLIKFYKSSK 345


>gi|167753079|ref|ZP_02425206.1| hypothetical protein ALIPUT_01349 [Alistipes putredinis DSM 17216]
 gi|167659393|gb|EDS03523.1| hypothetical protein ALIPUT_01349 [Alistipes putredinis DSM 17216]
          Length = 361

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 129/344 (37%), Gaps = 20/344 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++ +  V    L  F   +L AL I         +   + +   +  A +     +
Sbjct: 19  LYVILLGLGTVIFVELIPFLGGLLGALTIYVLLRGQMRALTIRHKLRRSLAASLLIGEAI 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             F++PL  L +  + +++++        Q    +   + +  G                
Sbjct: 79  VCFLIPLSLLVWLLVAKLQDVTLDPSTVIQPIRNLAELIRERIGYNLLD----------- 127

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         ++ +PR           + ++++ ++  L+F    G  +   L   
Sbjct: 128 -------GDNIAKLVELLPRAGQWVLQSIGSFAVNVVVLLFVLYFMLIGGREMESYLRKF 180

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    ++ +R V  ++RS  +G+ ++A+ +G V    YWL GVP  +  GV+T + 
Sbjct: 181 IP-FNRTVTQEFTREVVMIVRSNAIGIPLLAVIQGAVALVGYWLCGVPWALFWGVVTCVA 239

Query: 252 AMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            ++P     + +  ++ YL + G+   A  L  +G + +  VD   R  L         L
Sbjct: 240 TIVPLLGTALVWLPLAAYLGLIGHWGAAVGLLAYGVVVITQVDNLARFVLQKRMADTHPL 299

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            T FG++ G+   G +G+  GPVL+++             +   
Sbjct: 300 VTIFGVIIGLSLFGFMGVIFGPVLLSIFIFCADLFKRRYLDEAP 343


>gi|210620919|ref|ZP_03292336.1| hypothetical protein CLOHIR_00279 [Clostridium hiranonis DSM 13275]
 gi|210155131|gb|EEA86137.1| hypothetical protein CLOHIR_00279 [Clostridium hiranonis DSM 13275]
          Length = 387

 Score =  112 bits (281), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 102/337 (30%), Gaps = 13/337 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKE----------ESSTFLAVIATVSVMCLFIV 76
                 P +    I +    I     ++                   ++  +    L  +
Sbjct: 43  FIAILYPFIIGFAIAYLLNFILKFIENRIISEKMKGKSPARVRAISMLLTYLVAGTLCYL 102

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            + F++   +  +  L + +     +   +   L +      AS    + L         
Sbjct: 103 FVHFVWPELLESIIGLFNDIPNYVNNATVMINKLIEEFNLTPAS---MEILESKWKELTD 159

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 T+ I  I            +  L +I  I  L    +      +   ++     
Sbjct: 160 FIMNFMTDIIPVIGNTIMVVISSLWNIVLGVIVSIYLLKDKEKFFAISKKITYAIFNREH 219

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +++    K+      G  + +    ++      +  +P  + + VI  +  +IP 
Sbjct: 220 SYKILELTHRANKIFGKFLGGKILDSFIIAIITFVILTIFKMPYTLLVTVIVGVTNVIPF 279

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P      S+ L+   +   A  L +   I   +    + P ++G  I +      F L
Sbjct: 280 FGPFFGAIPSVILVRFVSPIKAFWLLIIILIIQQLDGNVIGPKILGDSIGVSAFWILFAL 339

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   + +GL+G+ +G  L A I  I K+      + K
Sbjct: 340 LIAGKFLGLVGMLLGVPLFAFIYSIIKDVTEERLDKK 376


>gi|116252884|ref|YP_768722.1| transmembrane transporter protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115257532|emb|CAK08629.1| putative transmembrane transporter protein [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 368

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 139/351 (39%), Gaps = 5/351 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              +    +   ++  ++ V    +  F   +L ++I+     P++    ++      + 
Sbjct: 14  RPSIIHAAVQLGIVALLVYVCARIMLPFLGLLLWSVILAVMLHPLHLRLSNRIGNR--WS 71

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +  +  + + +VP+  +       +  LVS +   +    P P WL+D+P        
Sbjct: 72  ASLIGMVGVAVVLVPMYLVVTSLGSSIYWLVSGLQNHSLTIPPPPAWLADVPAVGAKLSA 131

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +    L +     + T    ++  FA       L + LSI    + + +      
Sbjct: 132 GWSLAAANLPLALSQYGEMLTKPAAWLASFAGGLATGGLSFVLSIAIAAVLVAYAKGAAA 191

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L+ +          ++  +    IR   +G+  +A+ + +++G  ++  G+P+  
Sbjct: 192 FALSLLELVTNSKAR--GARLIHLTASTIRGVAVGVVGVAVIQSMLVGIGFFAIGLPAAG 249

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           AL ++T ++A++     +    V  Y+ +      A    +W      + D  L+P ++G
Sbjct: 250 ALTLVTFLLAVVQIPPLLLTLPVMAYVFVTEATTPAIIFAIWSFFA-GLSDNLLKPLMLG 308

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               +P      G++GG+   GLLG+F+GPVL+A+  V+  E +       
Sbjct: 309 RGSDVPMPVILVGVIGGMIADGLLGIFVGPVLLAVGFVLLMEWLHERPVED 359


>gi|295399501|ref|ZP_06809483.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978967|gb|EFG54563.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 372

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 113/343 (32%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   I+ +  ++LY++     P + A  I F   P+     +K +       V+  +
Sbjct: 11  RFLLVIAIVVLGAIALYYVSTVIYPFIIAFFIAFFINPLVDFLETKAKMPRWLAVVVTLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L    +  L    +   + L + V    Q  +                +L     +
Sbjct: 71  VLFALVAGLVTLLIAEIVSGTQYLANVVPENFQKLVKYIETFFAQQIIPLYHDLAALFKN 130

Query: 129 HPQSLKILSETFLKTNGIDF----------IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              S +      ++  G             + +   +      +     IF ++A FF  
Sbjct: 131 LDASQQDTIMNNIQAVGTQIATTVGQFTQRVLQNIPQLLTWLPNAATVFIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D + ++  +  +         K++   + K +         +     +++     + GV
Sbjct: 191 KDWYRLTGMVQKILPAKAHKSGKRVFLDLKKALFGFIKAQATLISITTVIVLIGLLILGV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +I  ++ ++P           I                   I + +  + + P
Sbjct: 251 DYAITIALIIGLVDILPYLGTGIVFVPWIIYAAISGNIPFAIGLGVLYIIVLVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G + +G LGL +GPV + +I  +
Sbjct: 311 KVLSSSIGLDPLATLVALFVGFKLIGFLGLIVGPVTLVIIRTL 353


>gi|251780935|ref|ZP_04823855.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243085250|gb|EES51140.1| permease [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 303

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 106/310 (34%), Gaps = 13/310 (4%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           + + I+ +   PI   F SK +      +V+  + ++ LFI  +  +    + E+  +  
Sbjct: 1   MISFILAYIIAPIRDLFQSKFKIKKKVASVLIILIILGLFISCITLVIPELVKEISNIGV 60

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                      +                +                         + +   
Sbjct: 61  IFDNIANFLEDM-------------YIKFRVDSFPILKSIYNELMEKGNILFLNLSKSLF 107

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
              ++ ++  +S   + + +++F  DG  I  +L  +         KKI   + KV+   
Sbjct: 108 NNIVLIVENIVSCAVIPVVVYYFLCDGDKIYNKLLFILPTEKREVTKKILNDIDKVLGRY 167

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
             G   ++I  G +      +  V   + + ++ AI+ +IP   PI     ++ + +  +
Sbjct: 168 ITGQVFLSIIIGFLTFILLIIFKVKFPIWISILNAILNIIPYFGPIFGGVPAVLVALLDS 227

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
              A  + +   I   I    L P +      +  +     L+ G +  G +G+ +   +
Sbjct: 228 PIKALWVTIGVFIIQQIEGNILSPKITADSTDMHPVMIIILLLIGDKFGGFIGMLLAVPV 287

Query: 335 MALIAVIWKE 344
             +I V++ +
Sbjct: 288 GVIIKVLYDD 297


>gi|307692101|ref|ZP_07634338.1| hypothetical protein RbacD_03894 [Ruminococcaceae bacterium D16]
          Length = 426

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 43/367 (11%), Positives = 101/367 (27%), Gaps = 36/367 (9%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---------------SKKEESSTF 61
           +  +   L  L     P+   L++ F   PI                     K       
Sbjct: 33  ISAVKALLDTLAYILRPIFYGLVLAFLLLPIQRGIYEFLLEWLKGVWVNWPRKNGMLRFV 92

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +++    + +  + L  +       +  LV+                      +  + 
Sbjct: 93  SILLSLAFAVLVVYILLAMVLPQLYSSIVGLVNAFPGYIDSVQQWLTDFFQDNPDLQEAV 152

Query: 122 LWTKHLSHPQSLKILSETFLKTNGID---------------------FIPRFASRFGMIF 160
           L   + +     K  +E  L +N                         +        M+ 
Sbjct: 153 LPYYNSASESLEKWFTENGLLSNFQSADATMEWLQTELFPRLTGVFTSVYAGLWALVMLL 212

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            D  +++I  +  L    +      +   S+       +  + +R   +++     G  +
Sbjct: 213 KDLLIAVIVSVYVLVRKDKFAAQTKKITYSIFSTRIADFLVEETRSAYRILSGFINGKLL 272

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            ++  G++      L   P  + L VI  +  +IP   P         L++  +      
Sbjct: 273 DSLIIGIIALVCCNLLKFPYPMLLAVIIGVTNVIPFFGPFIGAIPCALLILLVSPLQCVY 332

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             ++  I        L P ++G    L      F ++      G  G+ +G  + A+   
Sbjct: 333 FCIFVLILQQFDGNILGPKILGDSTGLDSFWVLFSILLFGGLFGFAGMVLGVPVFAMFYS 392

Query: 341 IWKESIM 347
           +    + 
Sbjct: 393 VISRLVR 399


>gi|326789877|ref|YP_004307698.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
 gi|326540641|gb|ADZ82500.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
          Length = 377

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 115/335 (34%), Gaps = 2/335 (0%)

Query: 8   PQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            + +M  +I+ I  V +   + G FAP + A +         +    K         +++
Sbjct: 15  KKVVMILVILLIAFVIIKLNILGLFAPFIVAWLFASLLNGFVTWINKKTGLPRALGTILS 74

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++++   +  L FL      ++  +   +    +  I     L +     + +      
Sbjct: 75  MLTILSGVLGLLTFLIKKLWEQVVAIAYNLPSLTEELIMQVGQLEERFSSFFGTGKAPSA 134

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S+   L       L +     IP  A        D  L  + M++A FF  +D + I  
Sbjct: 135 ISNLDQLIEQIMDKLSSYLGSVIP-VAYNAVSKVPDIVLFTVVMLVATFFMTKDYYKIKD 193

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + +            + + V   I        I+      +     ++  V   + L V
Sbjct: 194 FVKAQFSDTIVDKVVIMQKGVLSAIGGYVRTQVIMMSITFSICMVGLFIFQVSYTLLLSV 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I AI+  +P     +         +    +      L     +F+  +   P ++   I 
Sbjct: 254 IIAIVDALPVFGSGTILIPWALYNLVTGQYTLAIGLLCIYGIIFVTRQIFEPKILSTQIG 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  L T   +  G RTMG +GL IGP L  ++ ++
Sbjct: 314 VYALVTIMAVYIGYRTMGFIGLIIGPALAVILKML 348


>gi|254525545|ref|ZP_05137597.1| hypothetical protein P9202_194 [Prochlorococcus marinus str. MIT
           9202]
 gi|221536969|gb|EEE39422.1| hypothetical protein P9202_194 [Prochlorococcus marinus str. MIT
           9202]
          Length = 347

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 106/340 (31%), Gaps = 3/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +  ++ +  + ++ L+ F   ++ +L+I      + +      +   +    +    + 
Sbjct: 7   FKLAVILVASLIIWTLRDFLLLIICSLVISNIVCNLCNQIKKGLKIPRSLSLFLVLTVIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + +    + E  E++  +         +     +    ++  E     +    
Sbjct: 67  VIVFTIFILVLPPFIKEFNEILDDIPNGLSKINILINTNLNKFNSLFYGEQSENIIDIFS 126

Query: 132 SLKILSETFLKTNGIDFI---PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            +  +      +     I    +             L +IF++        +     + +
Sbjct: 127 LINNIVTIPDASTIAKAIQESFKNLINIAGNLGSGLLKLIFVLAVSLMISIEPQQYKENI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +   ++ I       + +    M I ++  GL+      +  V   V+  +I 
Sbjct: 187 LLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYVVSNALIA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P+      I + +  N +    +     I   I    + P ++     L 
Sbjct: 247 MVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T     G     G LGL +   L  +I VI KES   
Sbjct: 307 PGLTLISQFGFTFIFGPLGLILSLPLAVVIQVIIKESFKD 346


>gi|302536611|ref|ZP_07288953.1| integral membrane protein [Streptomyces sp. C]
 gi|302445506|gb|EFL17322.1| integral membrane protein [Streptomyces sp. C]
          Length = 448

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 83/283 (29%), Gaps = 14/283 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P       +          +  +    +  +   F+ +  M  + +L +++         
Sbjct: 123 PFVVRL-RRLGLPRGLATAVTAILGFVVIGLVGWFVVWQVMENLDDLSNRLREGINELKS 181

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                       WA +          +    + +       + I     +   + ++   
Sbjct: 182 ------------WALDSPFHVTEKQINDIAKNLSETIGTNTEEITSAGLQGVTVLVEVLT 229

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++  + +  F   DG  I   +  L                 + + +   G  ++A+ +
Sbjct: 230 GMLLAMFSTLFLLYDGKRIWTWVLGLVPAAARPGVAGAGPRAWRTLTAYVRGTVLVALID 289

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLW 284
            + +G   +   V   V L V   + A IP     IS     +  L+      A  +   
Sbjct: 290 AVFIGLGLYFLDVTMAVPLAVFIFLFAFIPLVGAVISGALAVVVALVTQGPVIALAVLGV 349

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                 I    L+PF++G  +++  L     +  G    G+ G
Sbjct: 350 VLAVQQIEGHVLQPFILGRAVRVHPLAVVLAVAAGGMVAGIGG 392


>gi|297624779|ref|YP_003706213.1| hypothetical protein Trad_2564 [Truepera radiovictrix DSM 17093]
 gi|297165959|gb|ADI15670.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 385

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 105/326 (32%), Gaps = 5/326 (1%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             + ++     +   +++      +            T+   +  VS+  L  +   F  
Sbjct: 40  GAWRVQSVVFLLFLGILLAVFWRGLARPLARSTPLPMTWAVGVVIVSLTVLVGLLGWFFA 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++ L + V  A +                      T   +    L      F  
Sbjct: 100 PPLVTQLQLLAAAVPEALEELERTLTTTPLGRALRREMPDMTDQETVMDLLLPRLTDFAG 159

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +     FA+  G        +++F+     FF          + +L      A   +
Sbjct: 160 QFVVQLFGTFAATAG-----VVTNLVFLFFTALFFALHPDFYRGGVVALFPKARRARLDE 214

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + R   + +    LG  +  +  GL++    W   +P  + LG +  ++  IP   P + 
Sbjct: 215 VLRAAGETLWFWLLGRFVAMVAVGLMVTLGLWALDMPLALLLGFLAFLLDFIPYVGPFAA 274

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           +  ++ L      +    + L       I    + P +    ++LP + T   + G    
Sbjct: 275 SVPALLLAFTVGPWTFVWVALLYTAVQQIESYLVTPVVQQRAVELPPILTLIAIFGFGGL 334

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMA 348
            GL GL +   LMA++ V  ++  + 
Sbjct: 335 FGLWGLLVSTPLMAVLLVFVRKLYLE 360


>gi|27382435|ref|NP_773964.1| hypothetical protein blr7324 [Bradyrhizobium japonicum USDA 110]
 gi|27355606|dbj|BAC52589.1| blr7324 [Bradyrhizobium japonicum USDA 110]
          Length = 394

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 97/339 (28%), Gaps = 16/339 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +   + L   +        + + ++          +       +  +   +  +   
Sbjct: 57  LTLLAACVFLFLAWQTVSSLLLIFAGVLFAAFLDACARALAPVLPLNRAWRLTLVLLLFS 116

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    +++       + + L+  +                   G      + + L   Q
Sbjct: 117 ALSGFGMVWGAGKLPEQTRLLLKVMDSQIDVLQEHLLSYGVDLLGPEWGRDFAQWLFSDQ 176

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +    FL       +                    ++     F  D  S  + L  L
Sbjct: 177 GRFLSHAQFLLGGASTLLTGAL---------------VILFLGILFAFDPNSHRESLVML 221

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +  + A  + +   +  V+R   +G  I  I   L +  A +L G+P    LG+   + 
Sbjct: 222 VKQSYRARTRAVMDEIGTVMRLWLVGQLIRIILMTLWVWIALYLIGLPGPFVLGLQAGLS 281

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   PI        + +           L   I   +    + P +    +++P   
Sbjct: 282 NFIPYLGPIVAAIPIALVAMPLGSSLLIWAVLIYTIIQSVEGYVIGPLIQRQAVEIPPAW 341

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALI-AVIWKESIMAI 349
           T   +V      G+LG+ +   L+A+    I +  +   
Sbjct: 342 TLVAIVILGALFGVLGIALAMPLVAIGRVAIIRFYVEDY 380


>gi|154248206|ref|YP_001419164.1| hypothetical protein Xaut_4286 [Xanthobacter autotrophicus Py2]
 gi|154162291|gb|ABS69507.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 343

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 103/351 (29%), Gaps = 19/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++ +     + +      V +A+++      +   F         +      +
Sbjct: 9   RRVAMAILVAVAFYFAFRVVDVILQVFAAVLVSLALHALAEPFARLTRFPERYAVFPVAL 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V     + L        +++ EL +++  A                    S    +   
Sbjct: 69  LVFGGIGLTLYLFGSTIQVQVTELFNELPAAW-------------------SAFEKRFHL 109

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S  +L          + +               L    +++   +F        +  
Sbjct: 110 EGMSDDLLRRAEAAAPSGETVISAVQGLTSNLFQVVLGSFLVVVGGIYFAASPDLYRRMF 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL      A   +    + + +R       I  +  G++      + GVPS +AL +  
Sbjct: 170 LSLWAEPERAAVARRLAAISEDLRHFLKAQLIAMVVVGVLTFIGLTIVGVPSALALALFA 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +   +P   P+   A ++ + +   + +     L   I        + P L    + LP
Sbjct: 230 GLAEFVPMIGPVVAAAPAVLIALTLGMDSGLWTLLVFVIVQQSESNVITPLLQQRMVSLP 289

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              T F +V      G LG+ +   L  L    +K       + + K   +
Sbjct: 290 PAVTLFAVVAFGNVFGALGVLLATPLTVLAFAAFKAHGEPEAKPEAKPEQD 340


>gi|285808297|gb|ADC35828.1| hypothetical protein [uncultured bacterium 89]
          Length = 349

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 109/337 (32%), Gaps = 15/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF--LAVIA 66
           +      ++ + +  +Y ++      + AL+  +   P+          S T      +A
Sbjct: 10  RYTWTAALVLLAMSMVYLIRHTLFIFVIALLFAYLLSPLVDFLDRLFPSSRTRTPALALA 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V  + I     L    + +  E ++++                  G +         
Sbjct: 70  YILVTGILIGGGFMLGTRAVDQANEFITRIPEVVGKAKNFAPKDGSWLGRLL-------- 121

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                            + + ++P        +     L ++  I + F           
Sbjct: 122 -----ENTEDQLAQRINDVLHYLPALGKGVISVAETLVLIVVVPIFSFFLLKDASSLRKS 176

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L+ +G        + ++  V  ++      + ++ +    +   A   AG P  + L  
Sbjct: 177 LLEMMGTGSHRELMEDLADDVNLLLAQYVRALALLCLTTFTIFALAAEFAGAPYPLLLAG 236

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I A +  IP   P++   + I + +     +   +  +  I     D  + P L+   ++
Sbjct: 237 IAAGLEFIPMVGPLTAAVLIIVINLIAGYPHILGVLAFLGIYRIFQDYVVAPRLMSAGME 296

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L   FG+  G    G+ G F+    +A+I ++++
Sbjct: 297 LHPLMVMFGVFAGAEVGGIPGTFLSVPAVAMIRIVYR 333


>gi|297543538|ref|YP_003675840.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841313|gb|ADH59829.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 354

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 115/348 (33%), Gaps = 3/348 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++ + +  + I+   +  I  + ++ +  F  P + ALI      P  +    K +    
Sbjct: 5   LKYSDIIKKIILIVSVFIIFYLVIFKIIPFLMPFVMALIFAVIIDPGVNFLEKKLKVPRG 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I  + ++ +    +  +    + E+  L                 L D     + S
Sbjct: 65  LASFILLLILIGVIGSLIAIIVTQLIYELSSLAEISTNYANTINDAILNLVDRIRTYYIS 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      ++  +      +     +  +   F     ++    +  ++A FF  +D
Sbjct: 125 LPPNITSLIESNMYSIL--NYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKD 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   +       +  + K I   + K        +  I +   L +     + G   
Sbjct: 183 KNLILDFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVIIGFDY 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              LG+   I+  +P     S         +I    +      L   I + +V + + P 
Sbjct: 243 PFLLGLFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVVVVRQMIEPK 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +VG  I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 303 IVGQSIGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 350


>gi|157375572|ref|YP_001474172.1| hypothetical protein Ssed_2435 [Shewanella sediminis HAW-EB3]
 gi|157317946|gb|ABV37044.1| protein of unknown function UPF0118 [Shewanella sediminis HAW-EB3]
          Length = 361

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 117/352 (33%), Gaps = 11/352 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  I +++YF  G  AP+L AL++ F      +  I K   + T 
Sbjct: 10  KERFSDPQAVTLVFILMGIALAIYFAGGLLAPLLVALVLAFLLEWPVAQMI-KVGMNRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A    V  +   ++    L      +   L++ +      G+   +   +        +
Sbjct: 69  AASAVLVLFIGTMLLITFGLVPSIWKQGLALITDLPTMLDKGLHTAQSYVNQYPQFVNPD 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     ++    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QL-------DTMVGELKKMLDTQHLLDIGKQIIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +              +K+   + + I +   G  I  I  G V    + +  +   
Sbjct: 182 DELIKGSKRFIPT-NRELARKVWYEMHQQIFNYIRGKVIEIIIIGGVSYVFFAIMDLRYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPIALVAFFQWGISPEFGYLMLGYGIIQALDGNLLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           L    + L  +     ++      G+ G+F    L +L+  +         +
Sbjct: 301 LFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVLNAWPTPNSQ 352


>gi|110598136|ref|ZP_01386414.1| Protein of unknown function UPF0118 [Chlorobium ferrooxidans DSM
           13031]
 gi|110340268|gb|EAT58765.1| Protein of unknown function UPF0118 [Chlorobium ferrooxidans DSM
           13031]
          Length = 359

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 72/357 (20%), Positives = 149/357 (41%), Gaps = 6/357 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   Q I+  +++FI  +    ++ FF  +  A I    + P+++ F      S +  A
Sbjct: 3   SIKANQIILLLVLLFISALFFAMIRYFFMAIFLAAIFSALAMPLFNRFNRWFRGSQSLSA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V+++ +  +PL  L      +   L S  +   Q  I  P         +   +  
Sbjct: 63  AMTIVTLLLVVFLPLAALLGVVASQAVRLSSIALPLIQQQIKEPAVFDQQLRTLPFYDE- 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L+  +   +     L +     +    S F +  ++    +   +  +FFF +DG  
Sbjct: 122 ---LALYREEILKKAGELASQAGSLLFSSISSFTVSAVNDLFLLFIFLYTMFFFLKDGQL 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              ++ +    L  +   ++      V R+T  G  ++ + +G + G A   AG+ S + 
Sbjct: 179 FLDRILACLP-LTKSDEYRLLDRFLSVTRATLKGTLVVGVVQGSLAGLALHFAGIESAIF 237

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            G + ++++++P   P I +    IYL   G    A  + L+ +I +  +D  +RP L+G
Sbjct: 238 WGTVMSVISVVPVLGPPIVWVPAVIYLAATGQYPQAIGVALFCSIVVGQIDNIIRPILIG 297

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              ++  L  FF  +GG+   GL G  +GP++ AL   +W+    +  E   +I   
Sbjct: 298 RDTRMHELLIFFSTLGGIGFFGLFGFILGPIIAALFVTLWEMYAESFSEFLAEIKGE 354


>gi|148273920|ref|YP_001223481.1| AI-E2 family membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147831850|emb|CAN02820.1| conserved membrane protein, AI-E2 family [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 377

 Score =  112 bits (280), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 103/336 (30%), Gaps = 14/336 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +   +  L  +K    P L  L+I     P+ ++   K+   +        +
Sbjct: 39  RLLVIGIAVAAAVWILIAVKEVVIPFLIGLLICALLEPLVAAL-RKRRWPAWVAITSTLL 97

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +    +L L       +  L  + +   +    +             ++     + 
Sbjct: 98  GTAVVISGLVLLLITQIRTGIPTLQREAMERFESVRDLL------------AQPPFNVVP 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S      N  + +   A   G+         +     +     DG  I + +
Sbjct: 146 SDYDALLASAGKALENSREALLTGALDAGLGVGHLVTGALLAFFTIVIVLIDGRGIWRFV 205

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+             R     + +       +A G  + +G A WL G+P  + + V+ 
Sbjct: 206 VSVFPRRARPAIDGAGRAGWGTLSAFTRVQIFVAAGNAVGIGIAAWLLGLPLAIPIAVLV 265

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP    I       +  L+      A  +         +    L+P ++GG + +
Sbjct: 266 FLASFIPVVGAIVSGAFAVVIALVFVGPLQAVIMLAAVIGVHLLESHVLQPLVMGGAVHV 325

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     +  G    G+ G       +A + V+ +
Sbjct: 326 HPLAVVLSVAAGSYVGGVAGALFAVPFVATVNVMVR 361


>gi|297626877|ref|YP_003688640.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296922642|emb|CBL57219.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 476

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 118/348 (33%), Gaps = 18/348 (5%)

Query: 12  MRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            R +I+  ++  +++L G       P+ +AL++     P+      K        A+   
Sbjct: 65  WRLLIIAALIGLMWWLGGTLSEIVTPLATALLLTAALMPLNLFL-RKHRWPHWLAALTCL 123

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ +    L  +      + ++L  +     Q  I               +   ++  
Sbjct: 124 LLLVVIIGGLLTLVGAQIGTQWRQLGEQAGKGVQAFITWLGTGPLHISQDQMNNWLSQAR 183

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +H ++ +              I   A+  G     +   +   + A FFF ++G   ++ 
Sbjct: 184 THLETQQNQ------------IVSVATAAGSGVGKFFAGLAMALFATFFFLKNGGHYARS 231

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +            +   +     + +      ++A  +G+  G    + G    +A+  +
Sbjct: 232 IIGTLPRANRIAAQGPLKSGWHALVNYVRAAVVVAAVDGVGAGVGALILGSNLWMAIMAL 291

Query: 248 TAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T + A +P    +          L+    + A  +       L +    L+P L+G  ++
Sbjct: 292 TFVCAFVPLIGALFSGAVAVAVTLVTLGFWKAVIMLAVFVAVLQLEAHILQPLLLGRAVQ 351

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +P L    G+  G+   G++G      ++A    I +      ++  E
Sbjct: 352 IPPLVVLVGIAVGMTLSGVVGGIFAIPIVAFATGIIRGIRHQGEDLAE 399


>gi|228966252|ref|ZP_04127312.1| hypothetical protein bthur0004_30660 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793436|gb|EEM40979.1| hypothetical protein bthur0004_30660 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 352

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 120/336 (35%), Gaps = 5/336 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 13  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF+  ++ +      ++  L+  +              +   G         ++L+
Sbjct: 72  IVIGLFVFLVVTVIPIIKDQIDALIDNLPYFGHE----IEQAARRFGESNLLGKIQENLN 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +    
Sbjct: 128 INVANMVKDYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHF 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I   +   I S   G  I+++  G++L   Y + G+   V L ++ 
Sbjct: 188 LKFISEQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILA 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ ++P   PI     ++ +    +      + +   +      K + P ++G  + + 
Sbjct: 248 MIVNIVPYVGPIIAITPALIIAFIDSPAMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIH 307

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +   F ++      G++G+ +     A++ V+   
Sbjct: 308 PITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTH 343


>gi|308188498|ref|YP_003932629.1| UPF0118 inner membrane protein yhhT [Pantoea vagans C9-1]
 gi|308059008|gb|ADO11180.1| UPF0118 inner membrane protein yhhT [Pantoea vagans C9-1]
          Length = 351

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 118/344 (34%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++   +    +++  ++ IIL  +        P+L A        P+ +  + +      
Sbjct: 4   LQREKIGQNILIKLAMLVIILAGVRAASDILVPLLLAAFFAIVLNPLVTMLMRR-GFRRG 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +    + C  ++    +      E  +L  ++    +  + V + L+       ++
Sbjct: 63  LAIGLVITVIFCGILLLGAIIASSM-SEFSDLYPQLRATMEQKMTVLQHLAAGFHLNIST 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   +                     + +   AS     F     + + +++ + F   +
Sbjct: 122 DALVQRFD-----------------PNTMVNLASAALSGFSGAMTNTVLLVLTVVFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++ +    + P           K +       T++++  G+ +  + +L  V  
Sbjct: 165 VHHLPYKMRNAL--VNPKIRIAGLHKALKGVTHYLALKTLVSLITGIAVWLSLYLLDVKF 222

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  I+  IP   PI       +  L+  ++F+A  +         +    L P 
Sbjct: 223 ALLWGVVAFILNYIPNIGPIIAGIPPFLQALLLNSLFDAAMVAALFTAIHMVFGNMLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+G  + L  L  F  LV     +G +G+ +   L ++  ++ +
Sbjct: 283 LMGRGLGLSTLVVFLSLVFWGWLLGPVGMLLSVPLTSITKILME 326


>gi|120401222|ref|YP_951051.1| hypothetical protein Mvan_0195 [Mycobacterium vanbaalenii PYR-1]
 gi|119954040|gb|ABM11045.1| protein of unknown function UPF0118 [Mycobacterium vanbaalenii
           PYR-1]
          Length = 384

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 104/339 (30%), Gaps = 14/339 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +  +L  +  L+    PV  A I+     P+      +          +  +
Sbjct: 28  RLLLILGAIVTLLWLILRLEIIVVPVALATILAALLLPVVDFLDRR-GAPRGGAVALVLL 86

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   LF   L F+    +     LV +V  + +              G W ++       
Sbjct: 87  SGFALFGGLLAFVITQFVEGAPALVGQVTTSIEGV------------GTWLTDGPLDVSP 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +      +  + +   A        +     + ++  L F    G +I   +
Sbjct: 135 QQINQLRDAAIEALRSNQEKLTSGALSTAGTVTEIVTGALLVLFTLIFLLHGGRNIFAFV 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +   R   + +        ++A+ +   +G    + GVP  + L  + 
Sbjct: 195 TKMFPVHVRDRVRDAGRAGFRSLIGYIRATFLVALVDATGIGVGLAIMGVPLALPLASLV 254

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    + +     I  LI      A            +    L+P ++G  + +
Sbjct: 255 FLGAFIPLVGAVVTGFLAVIVALIAKGWIYALITLGLIIAVQQLEGHVLQPLVMGRAVAI 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             L     + GG    G++G  +    +A +    +  +
Sbjct: 315 HPLAIVLAIAGGGVLAGIVGALLAVPALAFVNSAMRVLL 353


>gi|289577289|ref|YP_003475916.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           italicus Ab9]
 gi|289527002|gb|ADD01354.1| sporulation integral membrane protein YtvI [Thermoanaerobacter
           italicus Ab9]
          Length = 354

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 113/343 (32%), Gaps = 3/343 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + I+   +  I  + ++ +  F  P + ALI      P  +    K +      + I
Sbjct: 10  IIKKIILIVSVFIIFYLVIFKIIPFLMPFVVALIFAVIIDPGVNFLEKKLKVPRGLASFI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ +    +       + E+  L                 L D     + S     
Sbjct: 70  LLLILIGVIGSLIAITVTQLIYELSSLAEISTNYANTINDAILNLVDRIRTYYISLPP-- 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +++      + S     +     +  +   F     ++    +  ++A FF  +D   I 
Sbjct: 128 NITSLIESNMHSILNYISLFAKNLATWLLNFATKLPNFFFMTLITLVATFFISKDKNLIL 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +       +  + K I   + K        +  I +   L +     + G      LG
Sbjct: 188 DFIKRQIPSHWAQHAKNIQIDLLKTFFGYLRAVAAIMLITFLEVSIGLVIIGFDYPFLLG 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +   I+  +P     S         +I    +      L   I + +V + + P +VG  
Sbjct: 248 LFVTIVDALPVLGSGSVMIPWALYNIIIIKNYMVGIYLLILYILVVVVRQMIEPKIVGQS 307

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           I L  L T   +  GV+  G LGL IGPV + +   + +  I+
Sbjct: 308 IGLHPLVTLLSMFIGVKLFGALGLIIGPVFVVVFKALQRAEII 350


>gi|115375072|ref|ZP_01462341.1| hypothetical integral membrane protein in upfo118 [Stigmatella
           aurantiaca DW4/3-1]
 gi|310825428|ref|YP_003957786.1| hypothetical protein STAUR_8204 [Stigmatella aurantiaca DW4/3-1]
 gi|115367910|gb|EAU66876.1| hypothetical integral membrane protein in upfo118 [Stigmatella
           aurantiaca DW4/3-1]
 gi|309398500|gb|ADO75959.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 375

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 105/304 (34%), Gaps = 9/304 (2%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            + +K         +  +S + L     + L    M + + L++++    +       + 
Sbjct: 75  LLERKGLRRGLAIAVVMISGLALVGGLGMLLIPAAMTQGEALLTQLPTLMEEVRSFRLFR 134

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                     +      +   +    + T   T  ++ I    S  G +          +
Sbjct: 135 MLSEHFGALMQFGGTVAATGAAPSPPTGTLSLTPLLEAIGGAVSMMGGVVT--------I 186

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              + F    G  + + L           ++++   V +       G+++I      +  
Sbjct: 187 FFLVVFMLAFGKGMPRWLMEQLPAAHRQRYERVMLKVYQATGGYLSGLSLICTINATLTT 246

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           +   + G+P  + LG+++   +M+P   P+     +++   + G  F    + ++  I  
Sbjct: 247 TVLAVLGLPFFLPLGIVSGFSSMVPYAGPVVAGGFITLLTWVTGGWFKGMVVLVYFLIYG 306

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L P +    + +  L T   ++  V   G++G  +   ++A + +I +E +   
Sbjct: 307 QLEGNVLAPLVFRRTVHVNPLLTLLAVLFCVELAGIIGAMVAVPVVATVQIIVRELLQLR 366

Query: 350 KENK 353
           +E  
Sbjct: 367 QERN 370


>gi|315503987|ref|YP_004082874.1| hypothetical protein ML5_3207 [Micromonospora sp. L5]
 gi|315410606|gb|ADU08723.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 416

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 114/344 (33%), Gaps = 16/344 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  ++ + + + +    G    V+ AL +     P       K          + T++
Sbjct: 89  GALGVLLAYALFLGIRNAAGILVLVVIALFLAVGLHPAVVRL-RKWGLPRGLAVAVVTLT 147

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L +  LL L    + +  + + ++    +     P                   L  
Sbjct: 148 VVLLIVAGLLALVPPVVTQSGQFLQQLPGYVEELRRNPT---------------VNDLVI 192

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +    +     + I            +       ++ +++   +F      + +   
Sbjct: 193 RYDVMERVQAAANADTIGRALGGVLGGAQLIFGTIFRLLTVLVLTIYFLAYFDKLRELGY 252

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++         + I   +   + +  +G   IA+  G+         G+P   AL V+ A
Sbjct: 253 AMVPRSRRQRVRLIGDEILTRVGAYMVGALAIAVLAGVTTFVFALAVGLPYPFALAVVVA 312

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP         V   + +  ++       ++  +   + +  + P ++   + +  
Sbjct: 313 VTDLIPQIGATLGAVVVTLVGLATDLPVGIACLVFFVLYQQVENYLIYPKIMRRAVSVNE 372

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +      + GV  +G++G  I    +A + +I +E ++  ++ +
Sbjct: 373 VAALLAALLGVALLGVVGALIAIPTVAALQLILREVVLPRQDAR 416


>gi|149181142|ref|ZP_01859642.1| hypothetical protein BSG1_10423 [Bacillus sp. SG-1]
 gi|148851229|gb|EDL65379.1| hypothetical protein BSG1_10423 [Bacillus sp. SG-1]
          Length = 343

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 104/319 (32%), Gaps = 10/319 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P + AL+I     PI +    K +        ++   ++ +FI  +  L    +     L
Sbjct: 4   PFIIALVIALLINPIVNFLERKSKMPRGLAVALSLFLIIGVFIGLITLLITEIVSGANYL 63

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG------- 145
            + +       +             +  ++     +     +      ++  G       
Sbjct: 64  ANVLPQHVTTLVEYFENFIAAQVIPFYHQIIGLFKNLEAGQQGAIMENIQAAGEKIASSA 123

Query: 146 ---IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +    +          +    +IF  +A FF  +D + +S++             ++
Sbjct: 124 GDFLQNFFQRLPNLVSWIPNAATVLIFSALATFFISKDWYHLSEKFSKYVPVKAATSGRR 183

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   + K +         +     +++     +  V   + + ++T ++ ++P     + 
Sbjct: 184 VFHDLKKALFGFIRAQFTLISITAVIVLIGLLILRVDYAITIALVTGLVDILPYLGTGAV 243

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I   +               + + +  + + P ++   I L  L T   L  G + 
Sbjct: 244 FVPWIIYELITGNIGLGVGLGVLYLVVVVQRQIMEPKVLSSSIGLDPLATLIALFVGFKL 303

Query: 323 MGLLGLFIGPVLMALIAVI 341
           +G LGL +GPV + +++ +
Sbjct: 304 VGFLGLILGPVTLVILSTL 322


>gi|77457595|ref|YP_347100.1| hypothetical protein Pfl01_1368 [Pseudomonas fluorescens Pf0-1]
 gi|77381598|gb|ABA73111.1| putative permease protein [Pseudomonas fluorescens Pf0-1]
          Length = 356

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 43/349 (12%), Positives = 116/349 (33%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ +    +  +   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVVTLE-RLRVPGGA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M + +V ++ +      ++  L +++         +   L +    + + E
Sbjct: 69  AVGLVFALFMGVLMVFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLQAIEAARGEI--------GKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +         A   +++  + + I +   G  I  +  G V   A+   G+   
Sbjct: 181 AMIGEWVRGYLPRE-RALITRVAEEMNRQIANYIRGKVIEIVICGGVTYIAFVALGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  +  ++P    +  T   +   L   G       L     I   +    L P 
Sbjct: 240 ALLALLVGVSVVVPYVGAVVVTVPVLLIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPRK 348


>gi|255002913|ref|ZP_05277877.1| permease perM-like protein (perM) [Anaplasma marginale str. Puerto
           Rico]
 gi|255004041|ref|ZP_05278842.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Virginia]
          Length = 439

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 110/352 (31%), Gaps = 13/352 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +      V ++ ++        A ++ +   P+ +   S         +     S + +
Sbjct: 84  LLGAGCAAVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLES-IGLPRPVSSFAIIFSSVGV 142

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVL-----ANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           F   L+FL      +   L   +V        +           +        +  + LS
Sbjct: 143 FAALLVFLVPIAYSQTLALAKLLVDKLPFAGVEGIKNALLAYDMLRYDGVIGAMNPEALS 202

Query: 129 HPQSLKILSETFLKTNGIDF-----IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      F+K     +     +     + G+        +   ++ LF+       
Sbjct: 203 PHNLFSGNHVEFIKLLDGLYKNFIKVAVGVVQSGVGIGTIAAKVFITLLLLFYILGSWPI 262

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +    +    +   +      +  ++ +   G T + +   +     + + G+   + 
Sbjct: 263 VVKNALLMVPRHYLEGFSHCMSKIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGLEYSLV 322

Query: 244 LGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LGVI+ IM  IP   PI        + +L   +      + L   +   +    + P L+
Sbjct: 323 LGVISGIMTFIPYIGPILCASLGACLAILQDFSWTGTAAVILVFVVGNVVESNIITPVLL 382

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              + L       G+V      GLLG  +   + A+++V+   ++   K + 
Sbjct: 383 SKKLDLNPGWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLTHFAVEKYKHSN 434


>gi|323357214|ref|YP_004223610.1| permease [Microbacterium testaceum StLB037]
 gi|323273585|dbj|BAJ73730.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 392

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 114/338 (33%), Gaps = 16/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q I+  +++  ++  +  +     P++ ALI      P+      +K   +    ++  +
Sbjct: 42  QIIVVVLLLAGLIWGIQQVTLVIIPLVLALIFASAFGPVTMWL-RRKGVPAVIATLLTLL 100

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V+ +       +    +     L S+ V   Q        L         +E      +
Sbjct: 101 AVVVVLAGLGWLVVNSVINRWDYLSSQAVQGFQKAQDWYHTLPFAVPQEQVNEAIEGIKT 160

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S +                  A+        +    + M++ LFFF +DG  + + +
Sbjct: 161 FVTSAQ--------------FGTAAATSVGAIASFVTGFVLMVVILFFFLKDGPRMWEFV 206

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       ++I      V+ S   G   +A  + + +     +  VP  + L V+ 
Sbjct: 207 LRPFHGSHYDRARRIGDKTVTVLGSYMRGTASVAAVDAIGIYIGLLILQVPLALPLAVLV 266

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++A IP    ++     ++  L+      A  +     +   +    L+P L+G  +KL
Sbjct: 267 FLLAFIPIVGAVTAGILAALVALVTNGPIVALIVVGVVVLVNQLEGNFLQPVLMGRTMKL 326

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                   L GG    G+LG  +   L A++  I    
Sbjct: 327 HSFVVLVVLAGGTAIGGILGTLLAVPLTAVVWGIITVW 364


>gi|288553488|ref|YP_003425423.1| putative autoinducer -2 export protein AI-2E [Bacillus pseudofirmus
           OF4]
 gi|288544648|gb|ADC48531.1| putative autoinducer -2 export protein AI-2E [Bacillus pseudofirmus
           OF4]
          Length = 362

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 107/315 (33%), Gaps = 13/315 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + ++I+++  +  +  K         FAP++ A ++ +   P  +    K     +   
Sbjct: 15  ALVFLIIYLGSLVDWIFKPIVVLVQTLFAPIVLAGVLFYLLRPFVNLLSKKM--PRSISI 72

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I  +  + L    +L +      +   L             +   + +          +
Sbjct: 73  LILYLIAIGLITSLILLVGPELQRQFTSLTRNWPTFMNEIRNMIIAIQE----NEYISRF 128

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +  +        +     TN +  I    + F     +  + +I +   L++  ++G  
Sbjct: 129 QESENFSLEEITSNLEEYMTNIMSSIGSNVASFIGFIANVVIVLIIIPFVLYYMLKEGEK 188

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              Q+  L         ++I   +   + S   G  I++I  G+++   Y + G+   + 
Sbjct: 189 APNQVLRLLPRKHQKEGQRILSDMDYALSSYIQGQIIVSICVGVLVYIGYLIIGIEYPLV 248

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++     +IP   P   T   + +    + F A  + +   +   I    + P ++G 
Sbjct: 249 LALVAMFTNVIPFVGPWIGTFPGVIVGFLDSPFMALLVIIVVVVVQQIESNLISPQVMGR 308

Query: 304 PIKLPFLPTFFGLVG 318
            + +  L     L+ 
Sbjct: 309 KLDIHPLTIILLLLV 323


>gi|163752410|ref|ZP_02159603.1| permease PerM, putative [Shewanella benthica KT99]
 gi|161327707|gb|EDP98896.1| permease PerM, putative [Shewanella benthica KT99]
          Length = 360

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 55/360 (15%), Positives = 120/360 (33%), Gaps = 11/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  I +++YF  G  AP+L AL++ F      +    +   +   
Sbjct: 10  KERFSDPQAVTLVFILIGIALTIYFAGGLLAPLLVALVLAFLLEWPVAQMS-RLGINRIT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + ++ +  L      +   LV+ +      G+ + +   +        +
Sbjct: 69  AASLVLVVFVGIMLLLIFGLVPSIWKQGLALVTDLPTMLDKGLIIAQGYVNQYPQFVNPD 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     ++    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QL-------DTMVHELKKMLDTQHLLDIGKQILGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +               K+   + + I +   G  I  +  G+V    + +  +   
Sbjct: 182 DELLRGCKRFIPT-NRDLAHKVWIEMNQQIFNYIRGKVIEIVIIGVVSYIFFAVMDLRYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T    +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYLMLGYGIIQALDGNVLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     ++      G+ G+F    L +L+  +         + +     +
Sbjct: 301 LFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAVLNAWPTPESQVEPVGKES 360


>gi|159046446|ref|YP_001542117.1| hypothetical protein Dshi_3908 [Dinoroseobacter shibae DFL 12]
 gi|157914205|gb|ABV95636.1| protein of unknown function UPF0118 [Dinoroseobacter shibae DFL 12]
          Length = 383

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 116/333 (34%), Gaps = 7/333 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++  +++  +  +L  +     PV+ A+ +     P+  +   +  +  ++L     + 
Sbjct: 28  GLVAALLVIAMFAALRAMAPIAIPVVIAVFVALAVLPMDRAVAERLPKPLSWLGRAFVMV 87

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   +   +    Y + ++   +  V     + +     L     G   +++WT  L+ 
Sbjct: 88  FLLSILATFIVGLSYCVTQIATQLPDVSERLSNVL-----LERASSGQGNTDVWTAALTQ 142

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +++       L     ++    A             +  ++  +     +  + + +LD
Sbjct: 143 LRNMLDDQGAALADMAFNWASGVAQGVASSTGALLAGLFLVLFLVLLALSEADNWAAKLD 202

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++        W++++  + + +R       ++ +   +     +    +   +  G++T 
Sbjct: 203 NILTDRDRP-WRQVTTRLGQALRRFLATRAVMGLITAVAYTLWFLPFDLDLLLVWGILTF 261

Query: 250 IMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +M  IP    I      SIY  +  +   A  L     +   ++   L P + G  + + 
Sbjct: 262 LMNFIPNLGSIVSGVLPSIYAFLTLDPGTALLLAAGLVLIEQVIGNWLDPRVQGNSVAVS 321

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L     ++      G+ G F+   +   I + 
Sbjct: 322 PLVILVAVLFWGWFWGIAGAFLATPITLAIMIF 354


>gi|116695476|ref|YP_841052.1| permease [Ralstonia eutropha H16]
 gi|113529975|emb|CAJ96322.1| Permease [Ralstonia eutropha H16]
          Length = 411

 Score =  112 bits (280), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/338 (10%), Positives = 102/338 (30%), Gaps = 11/338 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +     L +++  + F  PV+ A+++ +   P+  +   +          +  ++
Sbjct: 63  VALVVLATLFSLYAVHIAREFLIPVVLAIVLAYLLDPLVCALQ-RLGLPRALAGTVVLLA 121

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHL 127
           V+   +            +++ +V+ +             L      MW       T   
Sbjct: 122 VLSALLSGAYL----LQGQVESIVNSLPETASKLSRSVGALMSGDDSMWQKVRRAATVLS 177

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q         +       I        +         + ++  L+F    G +  ++
Sbjct: 178 GTGQPPPARGTQVVVEQAPAQIHNMLLAGSVSIFTMAGQAVVVVFLLYFLLLAGDTFKRK 237

Query: 188 LDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
              +  H          +   V + IR     + +     G          GV +  +  
Sbjct: 238 FIKMVGHTISEKKISVHMLDEVNRSIRRYMGMLLVTNTALGACTWLLLKWLGVHNAGSWA 297

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +  A + ++P    ++       +  +  G +  A    +   +   ++   +  ++ G 
Sbjct: 298 IAAAALHLVPYFGALAIAVCLGVVTFMQFGTLGMAAAATVGSLLIATLIGSVVTTWMTGR 357

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             ++  +  F  L+      G+ G+ +   L+ +  V+
Sbjct: 358 MARMNAVAVFVALLLFTWLWGVWGMLLAIPLITIAKVV 395


>gi|254422637|ref|ZP_05036355.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190126|gb|EDX85090.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 365

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 121/326 (37%), Gaps = 13/326 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + L    + +  F   L+A ++ F           +     +   ++  +  + +  V  
Sbjct: 26  VALQIFAYFRTQFTIFLTATLLSFVLNYPVQWLS-RFRLRRSLAILLVLLITVSVLGVLG 84

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + ++ EL  ++               +    +      ++  +  Q+      
Sbjct: 85  VILAPPLVEQLNELSGRLPSWIDSSTSQVTAFQNWAVSLNLPIDLSRLSTQLQTRITTQV 144

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  + +  +P   S    + L   L+         +    G  +   L       + A
Sbjct: 145 QTISASILGLLPDAISSVVDLGLTVVLTF--------YLLLHGERLWDGLYQWLPDSWNA 196

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             + +   + +  ++ FLG   +A+  G  +  A+ +  VP  +  G+   +MA+ P G 
Sbjct: 197 RARPL---IKQNFQNYFLGQFTVAMLMGTAMTIAFVVIQVPFGLLFGIAVGVMAIFPFGP 253

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +S T +S    +K +I+    +    A+   +V+  + P L+GG + L  +     L+ 
Sbjct: 254 ALSITIISFLTALK-SIWLGVRVVTVAAVIDQVVENAIAPQLIGGFVGLNPVWILVSLLL 312

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKE 344
           G +  G+LGL +   + + I  I+++
Sbjct: 313 GTKIAGVLGLIVAVPVASSIKSIFED 338


>gi|149916663|ref|ZP_01905165.1| predicted permease [Plesiocystis pacifica SIR-1]
 gi|149822380|gb|EDM81769.1| predicted permease [Plesiocystis pacifica SIR-1]
          Length = 451

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/372 (12%), Positives = 99/372 (26%), Gaps = 40/372 (10%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + +++  L        PVL A  +   + P   +   +          I   
Sbjct: 10  RVLITGASLVVVVAGLRAAGPIVIPVLFAAFLTILAIPPVQALQRR-GFPDWLAVTIIVS 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+    +  L +        + + S               L +                
Sbjct: 69  GVLAGATLITLLVGNSLADFSQNVDSYGDQLEAIISNWLSLLDEYGLSFIEGTKLPTSTG 128

Query: 129 HPQSLKILSETFLKTNGI------------------------------------DFIPRF 152
               +  LS    +                                          I   
Sbjct: 129 GELEVPDLSPGVGEGAEGAAAEAVTGAEGGGAAEGGDESIMHPGTGALIDLIDPRMIANL 188

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
           A        +   + IF++    F   +   + ++L            +     V   I+
Sbjct: 189 AGSVVSSIGNALSNTIFVLFTTAFIMAEAAGLPRKLQLALGSTTEDVER--FSRVIDDIQ 246

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLI 271
                 T I+   GL+        GV   V  G++   +  IP    I      ++  L+
Sbjct: 247 EYLSIKTWISGFTGLLAWGLCLAVGVDYPVLWGLVAFFLNYIPTLGSIIAAVPPTLLALV 306

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +     +  L +       +V   L P ++G  + L  L  +  LV      G LG+F+ 
Sbjct: 307 QFGWERSLILVVGYVAINLVVGSILEPRIMGKRLGLSTLVVWLSLVVWGWIWGSLGMFLS 366

Query: 332 PVLMALIAVIWK 343
             L  ++ ++ +
Sbjct: 367 VPLTMVVKILLE 378


>gi|312862745|ref|ZP_07722985.1| putative lipoprotein [Streptococcus vestibularis F0396]
 gi|322516754|ref|ZP_08069662.1| permease [Streptococcus vestibularis ATCC 49124]
 gi|311101605|gb|EFQ59808.1| putative lipoprotein [Streptococcus vestibularis F0396]
 gi|322124713|gb|EFX96160.1| permease [Streptococcus vestibularis ATCC 49124]
          Length = 378

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 112/334 (33%), Gaps = 18/334 (5%)

Query: 33  PVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMCLFIVPLLFLF 82
           P L    I F    + S +              +       ++A  ++  +F   +  + 
Sbjct: 41  PFLVGAGIAFVVNILMSFYEKILVKFIPFGFITKIKRPVSLLLAFATIGLVFTWVVFTVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+S+   A  + I        +   +      T+      S        + 
Sbjct: 101 PDLIDSINTLISQDRSAINNLINWLLKNKSLQKVIQDLGGVTQVRELINSYSAQLLQQIM 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPAY 199
           T   +F+    S          +++   ++   +       +  Q++ L +     +   
Sbjct: 161 TGLTNFLTSLTS-----LPSTLINLFISVVFSCYVLAGKEKLGNQVNRLVDVYLGRYGKT 215

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+    R+ F+  +I A   G +      +   P    + ++    AMIP    
Sbjct: 216 FHYVVGILNNRFRNFFVYQSIEACILGTLCYIGMRIFNFPYAATISILIGFSAMIPVVGA 275

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L++  ++  A     +  I        + P++VGG   LP +   F +  G
Sbjct: 276 YIGVTIGTILIMTHSVTLALLFVAYVVILQQFEGNLIYPYVVGGSTGLPGIWVIFAITIG 335

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               G+LG+ +   + A +  I K++++  +E K
Sbjct: 336 SALAGILGMLVSVPVAATLYQIVKDNVVTREEAK 369


>gi|297538926|ref|YP_003674695.1| hypothetical protein M301_1740 [Methylotenera sp. 301]
 gi|297258273|gb|ADI30118.1| protein of unknown function UPF0118 [Methylotenera sp. 301]
          Length = 386

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 113/346 (32%), Gaps = 8/346 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++      +  +    ++ +L + + F   +L  +++ +T  P+       K       +
Sbjct: 25  SIQVKNVALVILTTIAVIFALDWAQNFVITLLFGILLSYTLNPLVKWLEYIKIPRIVGSS 84

Query: 64  VIATVSVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQH--GIPVPRWLSDIPGGMWA 119
           ++    ++ +              ++++ E+ +K+  A +   G P+             
Sbjct: 85  IVILTLILSIGFAGFTLRGQVQSIIVQLPEVTTKLTAAFETKRGEPLTDMQKVQIAASQV 144

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                   +   S K  S   +  +    I  F  R  +         I M    +F   
Sbjct: 145 ETATNSVTNAVASKKSSSMHVVIDDHKFKIGDFLWRGSLGIFGVVGEAITMAFLAYFLLL 204

Query: 180 DGFSISQQLDSLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            G +  ++L  L             I   +   I+     + I  +  GL +   + + G
Sbjct: 205 SGDTFKRKLVHLTGPSLSRKKITVHILEDINNSIQRYMFMLLITNVMVGLSMWVLFRMIG 264

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKT 295
           + +  A  V    + ++P   P+     +        G+   A  +     +   IV   
Sbjct: 265 LENAGAWAVFAGFLHVVPYFGPVVTAGATGIAAYMQFGSTSTAVLVAGMTMLVATIVGVF 324

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L  ++ G   K+     F  L+      G+ G+ +G  L+ +I VI
Sbjct: 325 LTTWMTGRIAKMNSAAVFISLLFFTWLWGVWGMLLGIPLIVIIKVI 370


>gi|254994787|ref|ZP_05276977.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Mississippi]
          Length = 434

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/357 (12%), Positives = 112/357 (31%), Gaps = 13/357 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +      V ++ ++        A ++ +   P+ +   S         +     
Sbjct: 74  KYLNCLLGAGCAAVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLES-IGLPRPVSSFAIIF 132

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVL-----ANQHGIPVPRWLSDIPGGMWASELW 123
           S + +F   L+FL      +   L   +V        +           +        + 
Sbjct: 133 SSVGVFAALLVFLVPIAYSQTLALAKLLVDKLPFAGVEGIKNALLAYDMLRYDGVIGAMN 192

Query: 124 TKHLSHPQSLKILSETFLKTNGIDF-----IPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + LS           F+K     +     +     + G+        +   ++ LF+  
Sbjct: 193 PEALSPHNLFSGNHVEFIKLLDGLYKNFIKVAVGVVQSGVGIGTIAAKVFITLLLLFYIL 252

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                + +    +    +   +      +  ++ +   G T + +   +     + + G+
Sbjct: 253 GSWPIVVKNALLMVPRHYLEGFSHCMSKIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGL 312

Query: 239 PSHVALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              + LGVI+ IM  IP   PI        + +L   +      + L   +   +    +
Sbjct: 313 EYSLVLGVISGIMTFIPYIGPILCALLGACLAILQDFSWTGTAAVILVFVVGNVVESNII 372

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            P L+   + L       G+V      GLLG  +   + A+++V+   ++   K + 
Sbjct: 373 TPVLLSKKLDLNPGWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLTHFAVEKYKHSN 429


>gi|302869551|ref|YP_003838188.1| hypothetical protein Micau_5104 [Micromonospora aurantiaca ATCC
           27029]
 gi|302572410|gb|ADL48612.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 416

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 114/344 (33%), Gaps = 16/344 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +  ++ + + + +    G    V+ AL +     P       K          + T++
Sbjct: 89  GALGVLLAYALFLGIRNAAGILVLVVIALFLAVGLHPAVVRL-RKWGLPRGLAVAVVTLT 147

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L +  LL L    + +  + + ++    +     P                   L  
Sbjct: 148 VVLLIVAGLLALVPPVVTQSGQFLQQLPGYVEELRRNPT---------------VNDLVI 192

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +    +     + I            +       ++ +++   +F      + +   
Sbjct: 193 RYDVMERVQAAANADTIGRALGGVLGGAQLIFGTIFRLLTVLVLTIYFLAYFDKLRELGY 252

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++         + I   +   + +  +G   IA+  G+         G+P   AL V+ A
Sbjct: 253 AMVPRSRRQRVRLIGDEILTRVGAYMVGALAIAVLAGVTTFVFALAVGLPYPFALAVVVA 312

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP         V   + +  ++       ++  +   + +  + P ++   + +  
Sbjct: 313 VTDLIPQIGATLGAVVVTLVGLATDLPVGIACLVFFVLYQQVENYLIYPKIMRRAVSVNE 372

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +      + GV  +G++G  I    +A + +I +E ++  ++ +
Sbjct: 373 VAALLAALLGVALLGVVGALIAIPTVAALQLILREVVLPRQDAR 416


>gi|120610682|ref|YP_970360.1| hypothetical protein Aave_2002 [Acidovorax citrulli AAC00-1]
 gi|120589146|gb|ABM32586.1| protein of unknown function UPF0118 [Acidovorax citrulli AAC00-1]
          Length = 434

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 106/326 (32%), Gaps = 15/326 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +    F P++ +L++     PI ++             V+    V  L         +  
Sbjct: 98  WASAVFIPLMLSLLLTIALQPIVTALRRWYIPRWLSAGVLLLGIVGGLGGT-----AWSL 152

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET------ 139
                ELV  + +A +      R     P  +   +     +    +  I  +T      
Sbjct: 153 SDGAAELVDSLPVAARKVRDAMRTNMRGPSPLDTMQKAASQIEQAATESIPPQTRRGVQR 212

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH--LFP 197
            +       I  +     +  +     +  ++   FF    G    ++L  +        
Sbjct: 213 VVIERAPFNIRDYVWTGTVGLVSAAGQLTVVVFLTFFSLASGNLFRRKLVRIAGQSLERR 272

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               ++   +   I+   L     ++  G+  G AY L G+ +    GV+  ++ + P  
Sbjct: 273 KITMEVLDDITGQIQRYLLVQVATSVLVGIGTGVAYALLGLENAAVWGVVAGVLNLAPYV 332

Query: 258 APISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             I  T  S  +  L  G +  A  +     +   IV   L P+L     ++  +  F  
Sbjct: 333 GSIVVTGASALVAFLQFGTVDMALAIGGASLLIHTIVGNLLTPWLTSRTSRMSPVAVFVS 392

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++      GL G+ +G  +M ++  +
Sbjct: 393 VLAWGWLWGLWGVLLGIPVMMVVKAV 418


>gi|160898823|ref|YP_001564405.1| putative phytochrome sensor protein [Delftia acidovorans SPH-1]
 gi|160364407|gb|ABX36020.1| putative phytochrome sensor protein [Delftia acidovorans SPH-1]
          Length = 879

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 113/344 (32%), Gaps = 16/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   ++  II+  LYF +G   P+  AL+ GF   P  S    +         ++  V
Sbjct: 68  RLLTGLLVASIIIAGLYFGQGLLIPLALALLFGFLLDPAVSRL-KRWGMPRMAATLLVVV 126

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-------IPGGMWASE 121
             +        +L      ++++L + +           R L           G +   +
Sbjct: 127 MALATLAGMGTYLGS----QVQQLSADLPTYQNTIRDKLRSLRRNANMPSAWDGALRTYD 182

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +S   +   + +  +++       R     G +     ++ I ++  +       
Sbjct: 183 TVEREISRGANTPRVQKVEIQSPEQKPTARMLQWLGRVAEPVTMAGIVLLFVILILLDRD 242

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + L  +G +L             + I        ++ I  GL + +  W  GVP  
Sbjct: 243 DLRDRLLRLMGGNLH--VATDALDEASQRIGKYLRMQFVVNITYGLPMAAGLWFIGVPGA 300

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPF 299
           +  GV+ AIM  +P    +   A  + L    +      L   G I     I +  + P+
Sbjct: 301 ILWGVLAAIMRFVPYVGAMISAAFPLALAFAVDPGWQMLLMTLGLIMALELISNNLIEPW 360

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L G    L  L             G +GL +   L   + V+ +
Sbjct: 361 LYGSSTGLSTLSIIVSATFWPALWGPIGLILSTPLTVCLLVLGR 404


>gi|15673164|ref|NP_267338.1| permease [Lactococcus lactis subsp. lactis Il1403]
 gi|12724148|gb|AAK05280.1|AE006350_7 permease [Lactococcus lactis subsp. lactis Il1403]
          Length = 313

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 97/301 (32%), Gaps = 5/301 (1%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
           + KK        ++  + +  L    L+      +  +    S V             L+
Sbjct: 1   MEKKRVPRVVTIIVLFLIIAALIAWGLIVAIPNIISGVDNFASSVPHYVNTAQKEINALA 60

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             P          +      +  I        N +  +    S+   I +          
Sbjct: 61  KNPHFEQFRPQVDQFAKSIGNQLIDWSKAFSVNAVTTLSHLISKTTSILISLI----VFP 116

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             LF+  RDG  ++  +  L  + +     K+   +   + +   G  ++AI   ++   
Sbjct: 117 FVLFYLLRDGQRLNGFVTHLLPNDWRKETSKVLHEINSQLSNYVRGQVLVAIAVAIMFMI 176

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELF 290
              + G+   VAL +    + ++P           + + L+ G       + +   IE  
Sbjct: 177 GLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIPMVIVGLVIGGPLMLVKVIIVLIIEQT 236

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  + + P ++G  + +  +   F L+   + +G+ G+ +     A + VI        +
Sbjct: 237 LEGRFISPLVLGKQMSIHPITILFVLLTAGQILGVWGVLLAIPFYATLKVIIVHVYEWYR 296

Query: 351 E 351
           E
Sbjct: 297 E 297


>gi|86748515|ref|YP_485011.1| hypothetical protein RPB_1390 [Rhodopseudomonas palustris HaA2]
 gi|86571543|gb|ABD06100.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           HaA2]
          Length = 368

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/340 (15%), Positives = 108/340 (31%), Gaps = 16/340 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +++ +++  LY  K FF P+++A ++G    P  +     +       AV+     
Sbjct: 33  ALVALLIIVVIGLLYVAKPFFLPIVTAFVVGTMLSPAATYLERWR-IPRAVCAVLIVALA 91

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      +  +    +     L    V+         R +        A       +  P
Sbjct: 92  LAGVGFMVALISVPLIDWTSRLPELGVILRDKLSFFERPMGLWRQLQSALGGTEPAVPAP 151

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +  +         +         F +  + +  S                     + +
Sbjct: 152 SQMPQIDWMQPTLEFLSPTLTEFLLFLVTLVLFIASW-------------KDLRRALVMN 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G         +I   + + +    L +TII +  G   G    LAG+P+   LG + A 
Sbjct: 199 FGGRDARLRTLRILNEIEQSLGGYLLTVTIINLCYGAATGVLCALAGMPNPAGLGALAAT 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP   PI    +   + I         L   L  A+  F+    + P ++G  ++L 
Sbjct: 259 LNFIPVIGPIVMFVILTLVGIISMPTMGEGLLAPLGFAVLTFVEGHFITPTIIGRRLELN 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L  F  L       G +G F+   L+ +  V+ +     
Sbjct: 319 ALAVFIALAFWTWLWGPMGGFLASPLLIVGLVLKEHLTAE 358


>gi|39997548|ref|NP_953499.1| hypothetical protein GSU2453 [Geobacter sulfurreducens PCA]
 gi|39984439|gb|AAR35826.1| membrane protein, putative [Geobacter sulfurreducens PCA]
          Length = 350

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 108/331 (32%), Gaps = 12/331 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR            +   ++L++ +F     + VL++L+I +   P      +K      
Sbjct: 1   MRPRDAAHIAWFLAITFGLVLLAGHFAVHSLSAVLTSLVIAYLLNPAMKFMEAK-GLGRL 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +S+    ++ L+ L  Y   +++     V     +   V           +  
Sbjct: 60  PAIAVLYLSIAVGILLALILLIPYLSHQLEAFPRAVPRYVDNLQLVMETWKGRLTPYYGG 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E  T  ++  +         L   G   + R              +++   I +FF    
Sbjct: 120 EEGTWLIARAEESLKKLALELTGKGYQQLTRAFFG--------LFNLVLAPILVFFMLYY 171

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +     H     ++++   + + +    L   +  +  G++   A +  G+  
Sbjct: 172 KDFVKDLVLRFVPHRERPSFREMGGRIKRSLERFILAQLLDCVIVGILSALALYAIGIEF 231

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL---WGAIELFIVDKTLR 297
            +  G++    +++P    +        +        +    +   +  I + I    ++
Sbjct: 232 PLLNGLVAGFASVVPFVGVMVAVIPPALIGYAETGDMSVIPLVCAAYFVISVIIEGNLIK 291

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           P L+ G ++L  L   F L+     MG  G+
Sbjct: 292 PLLMRGTLRLNPLAVIFVLMAMGELMGFWGV 322


>gi|325287490|ref|YP_004263280.1| hypothetical protein Celly_2592 [Cellulophaga lytica DSM 7489]
 gi|324322944|gb|ADY30409.1| protein of unknown function UPF0118 [Cellulophaga lytica DSM 7489]
          Length = 362

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/351 (15%), Positives = 120/351 (34%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + ++   LY +      +  A +      PI      K + ++T   +I   
Sbjct: 12  RALGIIVGIVLLCFFLYKISSVLVYISIAAVASLIGRPIVLFLRDKLKFNNTLAVIITMF 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    +       + +   L           + + +   +I         +    +
Sbjct: 72  FLIGIVGGIIALFIPLIIQQGHNLA---------LLDINQLQGNIENLYTEVINYFGVST 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + S  FL      FIP F +    +     + +  ++   FFF +D    S  L
Sbjct: 123 TELEENVKSSNFLTNVDFAFIPNFLNSLVGVLGSLSIGLFSVLFITFFFLKDRKLFSDGL 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L        +KK    +  ++   F+G+    +   ++      + G+ + + +  + 
Sbjct: 183 LMLTPQNKEGRFKKSMDTISSLLSRYFVGLVFQILILFVIYTIVLLVVGIENAIVIAFLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNAT---------CLFLWGAIELFIVDKTLRPF 299
           A++ +IP   PI   A+ + L +  N+  +           + +   I   + +   +PF
Sbjct: 243 ALLNLIPYVGPIIGGALMVTLTMSSNLGESFSEVILPKTGYVMIGFIIGQLVDNFFSQPF 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F  ++ G    G+ G+ I       I VI KE     K
Sbjct: 303 IFSNSVKSHPLEIFLVIIIGGLLFGITGMIIAVPGYTAIKVILKEFFADNK 353


>gi|325109727|ref|YP_004270795.1| hypothetical protein Plabr_3176 [Planctomyces brasiliensis DSM
           5305]
 gi|324969995|gb|ADY60773.1| protein of unknown function UPF0118 [Planctomyces brasiliensis DSM
           5305]
          Length = 352

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 109/337 (32%), Gaps = 26/337 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    I  S+Y L+    P + A+ +     PI  +   +   +    A I  V+ +
Sbjct: 11  LMTLTAIAIGFSIYGLRTVLVPFVIAVFVVSGIGPILDALQIRLHVNRLLAAGITFVAGL 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  V    L         EL        Q    +   + +    +   +         +
Sbjct: 71  VIMFV----LGSALWASTVELRQSAPAYRQRIQELVDRVENAFPNLPMQK-------KAE 119

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           ++            +D +           + Y ++   +++   FF             L
Sbjct: 120 AVTPEKNAEAIDAFLDAMLHKGIATLSSAMLYLITTGVVVLIYVFFM------------L 167

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +        +   IR      T++++  GL+ G    + G+P  +  GV+  ++
Sbjct: 168 LGQSTESSPSATWTKIDDQIREYLRLKTVVSLITGLIFGGVLAMFGIPMALTFGVLAFLL 227

Query: 252 AMIPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             IP   P+  T      I L  + ++     +    +   F+    + P L+G    L 
Sbjct: 228 NYIPNIGPLVATVLPVPLIILNPEAHLLWIVAVIGSISAIQFVSGNIIEPKLMGDSTDLH 287

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +     L+      G++G+F+   + A + ++  + 
Sbjct: 288 PIVILLALMFWGMLWGIVGMFLATPITAGLKLVLDQF 324


>gi|269793324|ref|YP_003318228.1| hypothetical protein Taci_1732 [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100959|gb|ACZ19946.1| protein of unknown function UPF0118 [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 355

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 118/336 (35%), Gaps = 4/336 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR  M  PQ  +   ++ + L S   ++    P+    ++ F           +      
Sbjct: 1   MRRDM-APQWAVGAFVLVLALWSYPVVRSMLEPLGMGAVMAFALSGPKRRLCRRA-NRPA 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A + T+  +   ++P  +  Y   +E++ + S+ +     G      L+D     +  
Sbjct: 59  LWASLLTLGFLFSIVIPTAYGVYALGMEVRGIASQGLQGLVRGDMDVAQLADALKARYGH 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +                              +            +I+          +D
Sbjct: 119 LVTHLPSEFGGLDLWSLGADGLIWLARQGLSMSGNLIGGITRATYTILLSCFFGLLILKD 178

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++ + L      L     +       +V+R+  +G  +  + +G +    +W +G+P+
Sbjct: 179 WEALVRALGRTIP-LGGWRARAFLLRSGRVMRAVIVGSVLTGLVQGGLGALGWWFSGLPN 237

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G+     + IP     + +   + YL + G+I     L  WGA+ +  +D  +RP 
Sbjct: 238 WATAGLGMFACSFIPVVGTALVWLPGAAYLALTGSIKGGLILAAWGALVVSSIDHLVRPL 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            +    +   L    G++GG+   G+ GLF+GPV +
Sbjct: 298 FMSSGEEASTLLMMVGVLGGLAAWGVPGLFMGPVAL 333


>gi|127513326|ref|YP_001094523.1| hypothetical protein Shew_2398 [Shewanella loihica PV-4]
 gi|126638621|gb|ABO24264.1| protein of unknown function UPF0118 [Shewanella loihica PV-4]
          Length = 389

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 105/336 (31%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P  +    + +        I  V
Sbjct: 12  KGFAIMAFIVVILAGIKAASPIVVPFVLSAFIAVICNPAINGMT-RLKLPRALAVAIMMV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                 ++  L+L       + E   ++ L     +    W+      +       + L+
Sbjct: 71  ----FIVLMGLWLASLVGSSINEFSRQLPLYRDQLVEQFSWVLTKLQALNIEVSKEQILA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +                +       S  G +  +  L I+ ++  LF        +   L
Sbjct: 127 YFD----------PGIALSMTTNMLSSVGGVMANLFLIILTVVFMLFEAQDLPKKLHFAL 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D       P    K      + +    +  T++++G G+V+G+   L GV   +   V+ 
Sbjct: 177 D------DPDMRIKQIDKFLQSVNQYMVIKTLVSVGTGVVVGTGLALMGVDYALLWAVVA 230

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       +   I+     A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPPVLLAFIQLGPAGAGGTALLYLATNTVMGNIVEPKYMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 326


>gi|323139388|ref|ZP_08074439.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322395381|gb|EFX97931.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 368

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/351 (17%), Positives = 136/351 (38%), Gaps = 5/351 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+       I   +I  +I  +   +  F   +  ++I+    +P+++   S+      
Sbjct: 19  LRDHNAIELAIRLSLIAILIYWTAVIVFPFAPIIAWSVIMAVALYPVFAWLSSRLGGRPR 78

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             AV  T   + L + P+ +L    +     L+  V        P    + + P      
Sbjct: 79  LAAVALTCMSLVLVVGPVTWLGLDLIEASTGLIDSVNAGKLAVPPPVASVKEWPLIGQQL 138

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +    S      +           + +    S  G+  L + LS++ M     F +  
Sbjct: 139 YDFWSLASTNMRSALAPLLPQLKPLGEKLIEAVSSAGVGTLKFLLSVVVMG----FLFLY 194

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   +++L   +  A   +   +    IR+   G+  +++ + +V G+   LA VP 
Sbjct: 195 AEPLVAVVENLASRIDGAQGARFVALAGDTIRAVSRGVIGVSLLQAVVAGAGMTLAAVPG 254

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L ++  I+ ++  G  +    V+I+  +  +   A  L +       + D  ++PF 
Sbjct: 255 ASVLTLLVLILGIVQVGPGLVTVPVAIWAWLSLSPLPALGLTICLGAV-SLSDALVKPFF 313

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +   +  P + TF G++GG+   G++GLF+GP+++A+   +    +     
Sbjct: 314 LSRGLTTPMIVTFVGVIGGILAHGIIGLFVGPIVVAVAWNLADAWLHDRDA 364


>gi|296112696|ref|YP_003626634.1| hypothetical protein MCR_0469 [Moraxella catarrhalis RH4]
 gi|295920390|gb|ADG60741.1| conserved hypothetical protein [Moraxella catarrhalis RH4]
 gi|326560951|gb|EGE11316.1| hypothetical protein E9G_03819 [Moraxella catarrhalis 7169]
 gi|326563813|gb|EGE14064.1| hypothetical protein E9M_02703 [Moraxella catarrhalis 46P47B1]
 gi|326566826|gb|EGE16965.1| hypothetical protein E9K_00888 [Moraxella catarrhalis 103P14B1]
 gi|326567334|gb|EGE17449.1| hypothetical protein E9Q_05493 [Moraxella catarrhalis BC1]
 gi|326569849|gb|EGE19899.1| hypothetical protein E9U_06036 [Moraxella catarrhalis BC8]
 gi|326571545|gb|EGE21560.1| hypothetical protein E9S_02959 [Moraxella catarrhalis BC7]
 gi|326576739|gb|EGE26646.1| hypothetical protein E9Y_02005 [Moraxella catarrhalis 101P30B1]
 gi|326577585|gb|EGE27462.1| hypothetical protein EA1_02327 [Moraxella catarrhalis O35E]
          Length = 415

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 103/342 (30%), Gaps = 3/342 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---STFLAVIAT 67
           I   + + ++L+S Y+L   +  V +++++      +                    I  
Sbjct: 10  IFMTVAVVLMLLSFYYLIHVWLIVFASILMAVWLLSLVEYLTLIPWVGQYLKKLPHGILL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             V+   +  L  L      E+   +  + L                     +       
Sbjct: 70  TMVLMGLVGVLSTLAALFGHELALQLENLKLLVPQAFEYMNQYLTQYLQTHPAVYEWLAG 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +     T   D    +   +    +    +++ + I   F         + 
Sbjct: 130 LEWARELRDNPQQFLTRFSDGAMAYLPTYLGGMVSGMGTLVVITIIGLFLAISPSVYRRS 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++         + +     + ++   LG  ++    G+  G A WL G+P  +ALG I
Sbjct: 190 FVAMVPKDSRDKAEYLLDRSYRSMQQWLLGQLVVMAFVGIATGIALWLMGIPFALALGFI 249

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++  +P   P       + L +  +      + L   +   +    + P +    + L
Sbjct: 250 AFLLDFVPVLGPWLSAIPILLLTLIVSPKMLLWVALMIVVVQQLESYVISPIVQNRMVDL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P +      V      G+LG+ +   LM ++ V  +   +  
Sbjct: 310 PPVALLLSQVIMGSITGILGIALATPLMVMVIVWVQVLYIKF 351


>gi|282854725|ref|ZP_06264060.1| putative membrane protein [Propionibacterium acnes J139]
 gi|282582307|gb|EFB87689.1| putative membrane protein [Propionibacterium acnes J139]
          Length = 433

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 104/332 (31%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 92  VLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATTAGTA 150

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    ++ + +     + +L S +    +    +  W + +                
Sbjct: 151 VIVVLAAGVVGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQEVIA-------- 202

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +            II ++  + F   D   +  +L 
Sbjct: 203 ---------DKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMIFMVMDTPQMHDRLR 253

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 254 MA--GSRKPVVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 311

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  ++  F++   ++P   G  + L 
Sbjct: 312 LTNYIPNIGFIIGVIPPALLALFKDGWVAAVVVVVSYSVLNFVIQSIIQPKFAGDAVGLT 371

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 372 PTMSFVSLLLWGWVFGALGTLIALPCSLLVKA 403


>gi|319780338|ref|YP_004139814.1| hypothetical protein Mesci_0592 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166226|gb|ADV09764.1| protein of unknown function UPF0118 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 389

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 117/339 (34%), Gaps = 12/339 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +F+ + +LYF + FF PVL A ++  T  PI    + K        A +  +
Sbjct: 30  RSLLIGIFLFMAIYALYFARAFFMPVLLAFLLALTLTPIV-RLLRKHGIPEVISATLLVL 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +C+F      L    +  +    S      +    + + L  I       ++  +   
Sbjct: 89  LSLCVFATAGYLLSGPIIDLINNTSSIGQKLTERLAQLRQPLEKIM------QISHQIEQ 142

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++ +      +       +   AS          +  +  +  L         I   +
Sbjct: 143 LTETSQESGIQKVAVAQSGILSAAASNILSAGTGLTIIFVLSLFLLASGTMFYEKI---I 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S           ++   V + I    L +TII  G G V+    W  GVP+ +  GV  
Sbjct: 200 QSFASLSEKKRALRVVYDVEREISHYLLTVTIINAGLGTVIALGLWALGVPNPLVWGVAA 259

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++  +P    +    +     L+    IF A     +  +   +  + + P +VG  ++
Sbjct: 260 ALLNFLPYVGALITIVLVTVMALISFDTIFYALLAPAFVILCDIVEGQFVTPMVVGRRLE 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  +  F  +       G +G  +   L+ +I V     
Sbjct: 320 INAVAIFIAIAFWSWLWGFVGALMAVPLLVVIKVFCDHF 358


>gi|304312910|ref|YP_003812508.1| Putative permease [gamma proteobacterium HdN1]
 gi|301798643|emb|CBL46875.1| Putative permease [gamma proteobacterium HdN1]
          Length = 360

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/355 (16%), Positives = 114/355 (32%), Gaps = 13/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    N + I+  +++      L  L G  APVL+A+++ +    I +   + +    T 
Sbjct: 10  QRYFSNDESIIIILLIAGFSAILATLGGILAPVLAAIVLAYLLQGIINQLAAWRVPK-TL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWAS 120
                    +      L  L      ++  LVS ++ L    G  V R L          
Sbjct: 69  ALAGVYALFLGSLASFLFVLVPLTWGQLVRLVSVQLPLLVTEGARVLRMLP--------L 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E          S      T      +D +  F+       +D  + I+ + + +FFF +D
Sbjct: 121 EYPEIVSEQWISDVSTVLTTRMNTLVDSVVSFSVSSLPSVMDTMIFIVLLPLLVFFFLKD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +              +  ++   +   I +   G  I  +  G +   A+ L G+  
Sbjct: 181 KDRLIAWFVGFLPQE-RPFMNRVMSEMNIQIANYVRGKAIEILITGSITYVAFLLLGLQY 239

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRP 298
              L  +  +  +IP    +  T   + +      + A    + +   I   +    L P
Sbjct: 240 AALLAFMVGLSVVIPYIGVVLVTVPVVVVAYFQFGWGADFFAVMVVHLIIQTLDGNLLVP 299

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L    + L  +     ++      G+ GLF    L  L+  I+         + 
Sbjct: 300 LLFSEAVNLHPIAIMVAVLVFGGVWGIWGLFFAIPLATLVNAIFSSWPREEPPSN 354


>gi|218888166|ref|YP_002437487.1| hypothetical protein DvMF_3082 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218759120|gb|ACL10019.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 397

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 131/336 (38%), Gaps = 10/336 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL----FIVPLLFLFYY 84
            F   ++   +     +P++    +         ++++ + V+       ++PL      
Sbjct: 39  SFLHTLILGAVFSAICYPLHLRCKTLVRG----SSIVSALLVLTGLVVCIVIPLCVFVAL 94

Query: 85  GMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
            + +  + V+ +       G       S++   +    +    +         +   +  
Sbjct: 95  LIPQGMQTVTAINKWLSGGGPAALLSESNLEPWLQWVRVNLPFIDLSHIDFQTNLLQMSR 154

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                + ++ S      + + L  + +++ +FF  +DG  + + +  L   L       I
Sbjct: 155 TAGQTLIQWGSYVLGNTMLFFLHFLLLLLVMFFMLKDGKRMVEGVKYLCP-LREEQEDMI 213

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + + +V R+  +G  ++A+ +G++ G    + G+P      V+     +   G  + + 
Sbjct: 214 IQSLRRVARAVLVGGLLVAVVQGVLGGLGMAIVGMPGLFWGTVMGFASLVPVVGTGLVWG 273

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             SIYLL+ G    A  L LW ++ +   D  LRP+ + G         F  ++GG++T 
Sbjct: 274 PASIYLLLMGQWKGAVFLVLWCSLVVAGADSFLRPYFMRGSSGASVFYIFLSILGGLKTF 333

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G+ G+  GP++++   V+        ++     ++N
Sbjct: 334 GMAGIIYGPLILSFTMVMLNLYGEEYRDILAPQTAN 369


>gi|182418999|ref|ZP_02950255.1| permease [Clostridium butyricum 5521]
 gi|237668112|ref|ZP_04528096.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377282|gb|EDT74850.1| permease [Clostridium butyricum 5521]
 gi|237656460|gb|EEP54016.1| permease [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 342

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 99/302 (32%), Gaps = 13/302 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K     +  +  + +   P     ++K + +    ++I  + V+ L I  +  +    +
Sbjct: 32  IKEIVNIIFISFSLSYVLNPAKEFLMTKLKVNKRTSSLIIILIVVGLIIGGITVMLPSFV 91

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  +        +    +    +              +     +    S        +
Sbjct: 92  DELASVGDVFDNVEKFYNNIADKFN-------------LNSIPGINSIYNSIVEKGNGLL 138

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +      + +      LS+  + I +++F  DG  +  ++  +         + I   
Sbjct: 139 TSVSDNLLDYILEASSKILSLAVIPIIIYYFMCDGDRLFLRMMLILPTNKREVTQNIVMD 198

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + KV++    G   +    G++         +   + + +  A+  +IP   PI     +
Sbjct: 199 INKVLKRYISGQLYLCGIIGILTFILLLSLQIKFPLWIAIFNALFNIIPYFGPIFGMVPA 258

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +   A  + +   +   I    L P + G  I++        L+ G +  G +
Sbjct: 259 VIVALMISPAKALWVLIGMILIQQIEGNILSPKITGDSIEMHPFVIIVLLLIGDKFGGFI 318

Query: 327 GL 328
           G+
Sbjct: 319 GM 320


>gi|83942810|ref|ZP_00955271.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. EE-36]
 gi|83846903|gb|EAP84779.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. EE-36]
          Length = 365

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 112/342 (32%), Gaps = 15/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E + + +  ++ +++  + V+ YF K    P++   ++  T  P+  +            
Sbjct: 2   EHLPSIRRSLQLLVLISLFVTAYFAKDLILPIVLGFLLALTLSPVGRALYRIGVPHPVSA 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++ T + + +  V LL      +        ++    +        +S+    M ++  
Sbjct: 62  FLLVTATSLVIAAVVLLSAGTVAI-----WSDEIPEMGREIQIKLSGVSNAVETMRSASE 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + L      K       +   +D      S+ G            ++I   F    G 
Sbjct: 117 EVEKLGTETGGKPQEVVVRQPGLLDTAMDTVSKTGASLA-------VILILALFLLGSGE 169

Query: 183 SISQQLDSLGEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +L      L            V K +    L +  I    G+++G+   + G+PS 
Sbjct: 170 LFYLKLVQSMPTLTEKKRALHTVYDVEKRVSRYLLTIATINAVLGILVGTYLTVLGLPSA 229

Query: 242 VALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              G+   ++  +P     +         L+    I  A    +       +  + + P+
Sbjct: 230 YIWGIAAFMLNFLPYIGGFAGVLLVAGFSLVTFDTIGYAMLAPIGYLTLTLLEGQIITPW 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           LVG  +++  +  F  +V      G+ G  +    + +  V+
Sbjct: 290 LVGRRLEMNTVAVFLTVVFWGWLWGIPGALVAVPFLVVFKVV 331


>gi|119510569|ref|ZP_01629699.1| hypothetical protein N9414_18158 [Nodularia spumigena CCY9414]
 gi|119464730|gb|EAW45637.1| hypothetical protein N9414_18158 [Nodularia spumigena CCY9414]
          Length = 386

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 115/324 (35%), Gaps = 13/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            I    ++       ++ A ++ F      S    ++      +A++  +  + + +   
Sbjct: 35  AISAIFHYFHSLIVILVGASVLAFLLNYPVSWME-RQGARREQVAILVFLIALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L+         +  T +L       ++  
Sbjct: 94  VTLFPLALTQAQQLVARLPELIDSGRSQLMMLNQ--------KAETLNLPINLDALVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                + +  I        ++     L  +  ++  F+  + G  + Q L       F A
Sbjct: 146 NDRVKSQLQAIAGQVLNLAVVTFTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPTRFRA 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + K    V    ++ F+   I++      L   +    VP  +  G+   IMA++P G 
Sbjct: 206 PFSK---TVRLSFQNFFITQLILSTCMASALIPTFLWLKVPFGLLFGLTIGIMALVPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   A++  L+   +      + +   I   I++  + P ++G    L  +     ++ 
Sbjct: 263 SV-GIALTTSLVALQDFSMGVKVLIAAVIVQQILENLIAPRILGNFTGLNPVWILISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G R  GLLG+ +      +I    
Sbjct: 322 GARVGGLLGVIVAVPTAVIIKTAL 345


>gi|323260092|gb|EGA43717.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 337

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 120/327 (36%), Gaps = 5/327 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
                A  I   +WP+            +   ++ T+ ++ LF++P+  L    +     
Sbjct: 1   MGFAWAGTIVIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGP 60

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L+  V   +     +    +    G      W   L    S  +            +   
Sbjct: 61  LIHAVTGGDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTTWFVG 120

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A+  G     + +    M++     Y  G  ++  +      L          +  + I
Sbjct: 121 QAAHIGR----FMMHCALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAI 176

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G         I+L  
Sbjct: 177 RAVALGVVVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAIIWLYW 236

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+    T L +W A+   + D  +RP L+     LP L    G++GG+   G++GLFIG
Sbjct: 237 TGDTTWGTVLLVWSAVVGTL-DNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIG 295

Query: 332 PVLMALIAVIWKESIMAIKENKEKISS 358
           PVL+A+   ++   +  +     +   
Sbjct: 296 PVLLAVTWRLFSAWVHEVPAPTNEPEE 322


>gi|319941451|ref|ZP_08015779.1| hypothetical protein HMPREF9464_00998 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805071|gb|EFW01901.1| hypothetical protein HMPREF9464_00998 [Sutterella wadsworthensis
           3_1_45B]
          Length = 383

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/339 (23%), Positives = 158/339 (46%), Gaps = 5/339 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I    ++ + +     L+ F   +L A ++   +WP+++   S   +SST  A +  +S
Sbjct: 24  IIRIVFMVVVAVGCYLVLEPFLTAILIAAVLAVVTWPVFNKLRSGMRQSSTAAASVMVLS 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L ++PL FL      ++   V       +  +P+ + +  IP           +   
Sbjct: 84  IVVLVLIPLSFLLVALAQQVPRGVQAAAAWLKDPLPILQAVQSIPYAGD-----WLYGEL 138

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   +        ++ +  +     +      + + F+   +FFFYRDG   + ++ 
Sbjct: 139 VSAIDPQTFAHTMQRILEPLSTWVLNAAVNVGSGVMQLAFVTFIVFFFYRDGSWFADRIS 198

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++ E +     ++I++I+    RS   G+   AIG+GLV G  +W+AGVP  + L     
Sbjct: 199 AVVERVSGGIAEEITKILVNTTRSVVFGIVGTAIGQGLVAGIGFWIAGVPGVLILSFAVC 258

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++++IP G P+ +   +++L  KG +  A  L LWG + +  VD  ++P L+     +P 
Sbjct: 259 VLSVIPIGPPLIWLPAAVWLWSKGELGMAAFLVLWGTLAVSSVDNFIKPLLIARGTSMPI 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              F G+ GGV   G LGL +GP+L+A+   ++   +  
Sbjct: 319 ALIFLGVFGGVLAFGFLGLILGPLLLAVGIALFSAWLKR 357


>gi|220930732|ref|YP_002507641.1| sporulation integral membrane protein YtvI [Clostridium
           cellulolyticum H10]
 gi|220001060|gb|ACL77661.1| sporulation integral membrane protein YtvI [Clostridium
           cellulolyticum H10]
          Length = 353

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 118/334 (35%), Gaps = 3/334 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + ++   I  +I +S+ +L  FFAP + ALI+ + + P+    + K + S    A I
Sbjct: 10  IIKKILLILFIFALIYLSITYLLPFFAPFIIALIVSYINEPVIKLLL-KFKISRKSAAAI 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + +  M +    +         E+  L   +   +         L D             
Sbjct: 69  SLLFTMSVLGFGITVGIIKIYNELTILQDNLTAYSSDISGKINGLID--KATLFYNGLPD 126

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +++  +  + S +      I  I ++            + +I  I+  +F   D  SIS
Sbjct: 127 QVTNTITKNLESFSEQLGTMIASIIQYVINTVSSIPRLTVFVIVTILGTYFISSDRKSIS 186

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                     +      + +   K +   F  + I+     L + +  ++  V     + 
Sbjct: 187 SFFYRQLPFSWRKNIVSLKKDTFKALIGYFKAILILMGFTFLEVSAGLFILNVKYAFLIA 246

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I  +   IP           I   I               +   ++ + + P +VG  I
Sbjct: 247 LIVGLSDAIPIVGTGVVMVPWILWTIITGDMPLAFGLGIIYVLGILIRQIMEPKIVGSQI 306

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L  L T   +  G++  G++G+F+GP+ + ++ 
Sbjct: 307 GLHPLVTLLAMYIGLKFFGIIGMFVGPISIIVVK 340


>gi|319401698|gb|EFV89906.1| conserved hypothetical protein [Staphylococcus epidermidis FRI909]
          Length = 361

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 105/341 (30%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +       +   F P L +  + +   P  +                  + ++ +  + +
Sbjct: 29  VFAPIATIIGSVFLPFLISGFLFYICLPFQNILEKW-GFPRWASITTIFIGLIAIIAIVV 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +                 L    + +I   
Sbjct: 88  SFIAPIIISNINNLIKQTPSLQREAEQLINFSLR----------QMDKLPDDVTHRINKA 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G   I   +  +   F+     +I +   L +  +D       +    +     
Sbjct: 138 VKSMGDGATSILSNSVSYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   ++I  G++L   Y + G+P    L +   +  +IP   
Sbjct: 198 FVVDLLKDLNFTLKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 258 PWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILA 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + +   L A+I  +        +   +K +SN
Sbjct: 318 AGDLGGFTLILVAVPLYAVIKTLVSNIFKYRQRIVDKANSN 358


>gi|307309747|ref|ZP_07589398.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|306899849|gb|EFN30473.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 381

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/342 (15%), Positives = 121/342 (35%), Gaps = 5/342 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     ++      S   +  F   ++ A I+    +P Y++  +         A++
Sbjct: 25  RITEIARIGLVGLFAYWSFTLIAPFAIILIWAAILAVALYPAYAALSAILGHRPRVAALV 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + + + PL  +       ++ +++++   +      P  +   P           
Sbjct: 85  ITMLALLVIVAPLAAIAISFAEGVQVVLARLNDRSLLISAPPDSIRSFPLIGERIYSVWS 144

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S      +                  +  G   L + +S++       F +  G  ++
Sbjct: 145 MASGNLEAVLQQIKPSLLQAGSKALGKIASIGADLLSFVVSVLVAG----FLFGSGARLA 200

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                    +         ++    IR+   G+  +A+ +  +      L  VP+  A+ 
Sbjct: 201 NSAQGFASRMGGDRGVGFLQLAAATIRNVARGVIGVALLQAFLCVLILSLFKVPAPGAIA 260

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +  I+ +I  G  +    V ++         A  LF    I L I+D  ++P LV   +
Sbjct: 261 FVVLILCIIQIGPALVLLPVIVWAWTSMEFGMA-ALFTILLIPLLIIDNVMKPILVARGL 319

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             P L    G++GG  + GL+GLF+GP+++++   +    + 
Sbjct: 320 STPTLVILLGVLGGTLSYGLIGLFLGPIVLSVFHSLLVIWMN 361


>gi|188589458|ref|YP_001920393.1| putative domain of unknown function [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188499739|gb|ACD52875.1| putative membrane protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 382

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 114/335 (34%), Gaps = 5/335 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCL 73
           ++  I   +   + F      A I+ F            SK +       V   ++ M L
Sbjct: 36  LLGKISGVIVIFQPFIIGFSIAYILNFILKFYEKKLNVHSKLKSKRGLGLVFTYITAMLL 95

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + + F+    +  +  LV+ V             L      +  SE +   +++  + 
Sbjct: 96  IGLFIQFVLPQLIQSIIGLVNDVPKFINESTKFINKL---MLDLNISEEYLPLINNNFNE 152

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I     + TN +  +  F ++      +  L +I  I  L    +      +   ++  
Sbjct: 153 FINYIIKIATNLLPVLGGFVTKIASSIWNIVLGVIISIYLLIDKEKFCAMSKKVTYAIFY 212

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I+           +G  + +   G++      +  +P  + + VI  I  +
Sbjct: 213 KNAAEKIIEITHRSNDTFGKFLMGKILDSFIIGILTFVILTIFRMPYAILISVIIGITNI 272

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P      S  +++      A    +   +   I    + P ++G  I +      
Sbjct: 273 IPFFGPFIGAIPSFIIILFVAPVKALWFLVIILVIQQIDGNIIGPKILGDSIGISAFWIL 332

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           F ++   + +GL+G+ IG  L A++  I KE + A
Sbjct: 333 FSILFAGKFLGLIGMIIGVPLFAVVYSIIKEIVEA 367


>gi|168182643|ref|ZP_02617307.1| putative membrane protein [Clostridium botulinum Bf]
 gi|237796003|ref|YP_002863555.1| hypothetical protein CLJ_B2795 [Clostridium botulinum Ba4 str. 657]
 gi|182674151|gb|EDT86112.1| putative membrane protein [Clostridium botulinum Bf]
 gi|229262524|gb|ACQ53557.1| putative membrane protein [Clostridium botulinum Ba4 str. 657]
          Length = 342

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 115/319 (36%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +  L + +I +   PI++     K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFLISFVIYYILKPIHTFL-KHKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + + V    ++   +   ++ +        +  K     Q+  +     +    
Sbjct: 90  IKEGYNITNSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIQNYTVSIGENILNKF 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + F             +  L    + I +++F   G  I Q+   +         K +  
Sbjct: 150 VGF------------GENILDYAVIPIIVYYFLAAGDKIIQKFFMIFPVKIRGVAKNVFE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIMSQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A   F+       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWAFILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMVLAIPIGVIMKIIYED 336


>gi|109899216|ref|YP_662471.1| hypothetical protein Patl_2909 [Pseudoalteromonas atlantica T6c]
 gi|109701497|gb|ABG41417.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 372

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 112/336 (33%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + ++L  +        P L ++ I  +  PI +     +         ++ V
Sbjct: 10  KVLLILASLVVVLAGVKAASTIVVPFLLSIFIAMSCSPIINWANRYRVPR-----ALSVV 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L +V    L       M +    V    +  +    ++              + LS
Sbjct: 65  LVILLIVVFGFMLAGLVGQSMNDFSENVPKYRKQLVEQFSFVIGRLNDFNIQLNQDQLLS 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +                ++      +  G +  ++ L ++ ++  LF        I   L
Sbjct: 125 YLD----------PGAAMNMATSLLTSLGGVLTNFLLILLIVVFMLFEAESFPRKIHIAL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D       P    +        +++     T++++  GLV+G   +  GV  ++   ++ 
Sbjct: 175 DD------PNMKMRQIDKFLLSVKNYLAIKTLVSLATGLVIGLWLYFLGVDHYLLWAMMA 228

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    I       +  L++     A    L   +   ++   + P  +G  + L
Sbjct: 229 FLLNYIPNIGSIIAAIPAVLLALVQLGPGVAGLTALGFVVTNTVMGNIVEPRYMGRGLGL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 289 STLVVFLSLIFWGWLLGTVGMLLSVPLTMIVKIALE 324


>gi|293605499|ref|ZP_06687881.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292816227|gb|EFF75326.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 354

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 131/339 (38%), Gaps = 7/339 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           + SLY L+ F   ++ A  I   +WP+      +         V+  + ++ + ++PL  
Sbjct: 2   VGSLYVLQPFLPGLIWATTIVVATWPVLLVVQQRCGGRRWAATVVMLLILLVVIVLPLYQ 61

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG--GMWASELWTKHLSHPQSLKILSE 138
           +          ++  V     + +  P          G   ++ W           +   
Sbjct: 62  VISTLAEHSGAIMDAVKRLPDYTLLAPPGWIRSVPVAGPKLAQEWQTLSDAGAGGLLARL 121

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T    ++   A+  G+  +   ++I+   I     Y  G + ++ +      L   
Sbjct: 122 EPYLTMAARWLLSHAAIVGVFVMHMLITIVISGI----LYSQGDAAAEFVKRFSNRLAGE 177

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
                 R+    +R+  LG+ + A+ +  + G   W+AGVP+   L  +  ++ +   G 
Sbjct: 178 RGVAAVRLAGAAVRAVALGIVVTAVVQSALGGVGLWIAGVPAAGILTALMVMLCLAQLGP 237

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +      I+L        A  L +W  I   + D  LRP L+   + L  L    G++G
Sbjct: 238 FLPMLGGVIWLFQNDMRLAAILLLVWALIVAML-DNLLRPMLIKRGVNLSLLLILSGVLG 296

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G+   G++GLFIGPV++A+ + + K  I  +      ++
Sbjct: 297 GMFAFGIVGLFIGPVILAVTSTLLKAWIDEVPPPASTVA 335


>gi|325845401|ref|ZP_08168697.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|325488570|gb|EGC90983.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 382

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 115/332 (34%), Gaps = 10/332 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----------KKEESSTFLAVIATV 68
           +I+ ++        PV+ A  I +  W                  K++ SS     I+ +
Sbjct: 36  LIIAAIKEFMAVITPVIIAFAIAYILWKPTVFVEKNLQKMTKKLMKRDLSSGASRGISLL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++ +L LF   +  +   +  +V +            D       S +  + ++
Sbjct: 96  IVVSLVVMLILLLFNTIIPPIITNLKLLVDSIPALHQTFNKYIDDISPYIQSFITEEQIN 155

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     +++ T  + F     +      +    +II  I  L        S+ +  
Sbjct: 156 EITRAITNLLSYIATQILQFGTGMITNMTGFIISVLTTIILSIYFLKDKETLTRSVYKAG 215

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L         ++  + +  V     +   I AI  G++        G P  + +G++T
Sbjct: 216 QTLLTPNGLKRSQQFLKDLDAVFGGFLIAQLIAAILAGILSSLILIAIGHPFALLVGLVT 275

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   PI    +   L +  ++  A    +   I   +    ++P L+   + L 
Sbjct: 276 GVANVIPYVGPILGAVLGGLLGLFSSLKMAILSLVLLTIYQQLDANVIQPKLLSNSVGLN 335

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +     ++ G   +G+LG+ +     AL  +
Sbjct: 336 PVWVLIAILIGGHYLGMLGMIVSIPSAALFQI 367


>gi|238651085|ref|YP_002916943.1| putative permease PerM-like protein [Rickettsia peacockii str.
           Rustic]
 gi|238625183|gb|ACR47889.1| putative permease PerM-like protein [Rickettsia peacockii str.
           Rustic]
          Length = 351

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 121/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   +          P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|218290422|ref|ZP_03494552.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239550|gb|EED06744.1| sporulation integral membrane protein YtvI [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 375

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 112/344 (32%), Gaps = 4/344 (1%)

Query: 1   MRETM-LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           MR  +    + ++    +   +++L  L  +  P +   +      P+      +     
Sbjct: 10  MRRYLWRVLEIVILLAFIAAFILALACLMQYILPFVIGWVFAILLIPVVRWLERRGMARL 69

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T + ++  VSV+C+  +    +      E    VS   +  +  +       +I      
Sbjct: 70  TSVLLVLGVSVLCIVAISAGIIIGAL-REATSFVSHSQVFFRVQLAQIE--GEIESSESL 126

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  +S+     +          +  I            D     +  ++  FF  +
Sbjct: 127 YGQLPPQVSNAVQSALTQFAHGLEGSVHKIITGLIGIVTHLPDTLFIAVISVVTAFFILQ 186

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               +  +   +    +      +   + +    T     I+      +     ++ G P
Sbjct: 187 RRERMLARFYRMMPPGWAPKLNAVFEDMERAFLGTIRVQFILMCLSMFLGMIGMFVLGFP 246

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + LG++  +  ++P       T     + +           L   + + I+  T+ P 
Sbjct: 247 YAILLGILFGLAGLVPIVGSAILTVPWAIVALITGHVAVAIKVLALQVVISIIRHTVEPK 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++   + L  L T FGL  G + MG +GLFIGP+L+     + +
Sbjct: 307 ILADSVGLDTLTTLFGLYVGFKVMGFIGLFIGPILLIGAKGLLR 350


>gi|149174938|ref|ZP_01853562.1| putative membrane protein-putative a permease [Planctomyces maris
           DSM 8797]
 gi|148846275|gb|EDL60614.1| putative membrane protein-putative a permease [Planctomyces maris
           DSM 8797]
          Length = 403

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/352 (11%), Positives = 96/352 (27%), Gaps = 29/352 (8%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             Y  +    P + A+ I     P+    + K +        +  + V+    +  + L 
Sbjct: 30  VFYVTQAVLVPFVIAIFIATIVTPLVDLLVLKWKMPQIIAISLTLLLVLSFGFLICMTLI 89

Query: 83  YYGMLEMKEL--------------------------VSKVVLANQHGIPVPRWLSDIPGG 116
           Y     + +                           V K+    +   P      + P  
Sbjct: 90  YSTQQVIYKAENQYSEKFGIFINSVFEAAKEADDLPVRKLEEDTKEPQPETPDQKEAPPE 149

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
              + +     +       +         +D + +    +    L             F 
Sbjct: 150 APPTVIVDDGEAVAAEKPEIGWFQKMGIDLDTLKKATMDYMRNSLKSIAVSTMQSALNFT 209

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                 +I       G         +I   + + IRS      ++++  G ++G    L 
Sbjct: 210 TTSFFVAIFVIFLLAGRDPNAVVKNEIYFEIEQKIRSYISTKLVLSLITGTLVGVTLKLF 269

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           G+   +   ++T ++  IP    +  T       +     + +    + L        + 
Sbjct: 270 GLELALVFAILTFLLNFIPSVGSVIATLLPIPVAFAQFSDSPWTIAGVILIPGGIQMAIG 329

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             + P L+G  ++L  +     L       G +G  +   + A I ++    
Sbjct: 330 NGIEPKLMGEGLQLHPVTVLLALSFWTLLWGPIGAILAVPITAAIRIVLMRF 381


>gi|157803500|ref|YP_001492049.1| hypothetical protein A1E_01595 [Rickettsia canadensis str. McKiel]
 gi|157784763|gb|ABV73264.1| hypothetical protein A1E_01595 [Rickettsia canadensis str. McKiel]
          Length = 351

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 125/350 (35%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++   I+  + + I +     +     P   A II +   P  +   SK + S+ F + I
Sbjct: 1   MSKTAILWLVFLGIFISGFMLISDAVKPFFIAFIISYLLQPTINFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   +  +     +          +P  M        
Sbjct: 61  IYLIFLNIFFLSLTILVPIIYGQIFTFIHNIPKYKNYFQGEI-----LPPIMVKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +++     + +        +  I     R+ +I ++  + ++ + I LF+F RD  +I 
Sbjct: 116 DIAYKIKDSLSNFINSIFTILSSIANNLWRYTIITINIFVLLLLIPIILFYFLRDWNNII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ENMKSLLPIKSRNKILEIISEINDLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  +          + +   +        L P ++G 
Sbjct: 236 ILTGFLVIIPFIGTFIAFLLTLIIGYVTFSMTAKLLYIMMIYLVGNICESYVLTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLITFYKFSK 345


>gi|57866582|ref|YP_188189.1| hypothetical protein SERP0602 [Staphylococcus epidermidis RP62A]
 gi|57637240|gb|AAW54028.1| membrane protein, putative [Staphylococcus epidermidis RP62A]
 gi|329738128|gb|EGG74346.1| putative membrane protein [Staphylococcus epidermidis VCU045]
          Length = 361

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 105/341 (30%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +       +   F P L +  + +   P  +                  + ++ +  + +
Sbjct: 29  VFAPIATIIGSVFLPFLISGFLFYICLPFQNILEKW-GFPRWASITTIFIGLIAIIAIVV 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +                 L    + +I   
Sbjct: 88  SFIAPIIISNINNLIKQTPSLQKEAEQLINFSLR----------QMDKLPDDVTHRINKA 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G   I   +  +   F+     +I +   L +  +D       +    +     
Sbjct: 138 VKSMGDGATSILSNSVSYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   ++I  G++L   Y + G+P    L +   +  +IP   
Sbjct: 198 FVVDLLKDLNFTLKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 258 PWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILA 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + +   L A+I  +        +   +K +SN
Sbjct: 318 AGDLGGFTLILVAVPLYAVIKTLVSNIFKYRQRIVDKANSN 358


>gi|170756779|ref|YP_001782180.1| hypothetical protein CLD_2000 [Clostridium botulinum B1 str. Okra]
 gi|169121991|gb|ACA45827.1| putative membrane protein [Clostridium botulinum B1 str. Okra]
          Length = 342

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 113/319 (35%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++     K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYILKPIHTFL-KHKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    ++   +   ++ +        +  K     ++  +     +    
Sbjct: 90  IKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKF 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + F             +  L    + I +++F   G  I Q+   +         K +  
Sbjct: 150 VGF------------GENILDYAVIPIIVYYFLAAGDKIIQKFFMIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILVRYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLVGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMVLAIPIGVIMKIIYED 336


>gi|153953946|ref|YP_001394711.1| permease [Clostridium kluyveri DSM 555]
 gi|146346827|gb|EDK33363.1| Predicted permease [Clostridium kluyveri DSM 555]
          Length = 341

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 13/321 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +  L+     +L + +I +T  PI    ++K   S    A I    V    I     L  
Sbjct: 28  VSVLREIIYLILISFLISYTLKPIQKIMVNK-GISEKISAFILIALVGLFIISIFAILIP 86

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               E   L + +         +   L  I G      L                     
Sbjct: 87  SLFKESLSLNNAIYSIQNLVDNIYGKLKLIQGNRTIHVLINNFNRKIDGE---------- 136

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  +        M      L ++ + +  ++F  +G  I++++ S          K I
Sbjct: 137 --VTVMFTRIFDSLMKMGQNILYVVVIPVITYYFLSEGECINEKVLSTFPIKSRGIIKNI 194

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           S    K++    +   +++   G+V      +  V   + L V+ A   +IP   PI   
Sbjct: 195 SCHADKILGRYIISQLMLSGFIGIVTFFILLILKVDFPIILSVLNAFFNIIPYFGPIFGA 254

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +I + +  +   A    +   +   I    L P +    I +  L     L+ G    
Sbjct: 255 IPAIAIALIESPEKAIWTAICLYVLQQIEGNILSPKVTADSISMHPLVVILLLIIGGEIA 314

Query: 324 GLLGLFIGPVLMALIAVIWKE 344
           G +G+ +   L  +I V++++
Sbjct: 315 GFIGMVLAVPLGVIIKVMYED 335


>gi|296270262|ref|YP_003652894.1| hypothetical protein Tbis_2291 [Thermobispora bispora DSM 43833]
 gi|296093049|gb|ADG89001.1| protein of unknown function UPF0118 [Thermobispora bispora DSM
           43833]
          Length = 407

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 108/343 (31%), Gaps = 15/343 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++++I   +  +     PV  A ++    +P+             +   I  +
Sbjct: 7   RLLLLCGMVYLIAWIIGRISIVVLPVAIAFLLTALLYPLTKRL-RDAGLRPIYATWITML 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +     +      E   LV ++            WL + P  +  +++      
Sbjct: 66  LGLAVIVGVGFLIGNRANEEFPRLVEQLQR---TAAEAQHWLLNGPLQLKQAQITHIVDE 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L               I           L+   S + ++   FF  +DG  I    
Sbjct: 123 IGKQLTEQRNE---------IVNTVLTGATAVLEALASFVLVVFVTFFLLKDGDKIWAWF 173

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +  R     I     G   IA   G+V+G+   + GVP  V L V+ 
Sbjct: 174 LKAFG-DAAPRVDRAGRAAWVTICHYVQGTVAIAAIHGIVMGTVLAVMGVPLWVPLAVLI 232

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + + IP     ++    ++  L      +A        +E  + +   +P +VG  I  
Sbjct: 233 FLGSFIPIIGIVVTGGLATLVTLGAQGWISALVFLAILVVEQQLENHLFQPQIVGRAIDF 292

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L     L  G    G+ G  +   L A++     E   A +
Sbjct: 293 HPLAVILVLAVGGVIAGIPGAAVAVPLTAVLYRALPELFRAER 335


>gi|242279199|ref|YP_002991328.1| hypothetical protein Desal_1727 [Desulfovibrio salexigens DSM 2638]
 gi|242122093|gb|ACS79789.1| protein of unknown function UPF0118 [Desulfovibrio salexigens DSM
           2638]
          Length = 365

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 123/330 (37%), Gaps = 2/330 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
               +K F   ++ ++++    +P+      +        A +    ++   I+P +  F
Sbjct: 31  GYSVIKPFINTIIISVVLSGIFYPLSKKICCRLGGRPALGAFLTVCIIIFAIIIPAVVFF 90

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQSLKILSETFL 141
              + +  + V+ +    +       + S      +   E          S        +
Sbjct: 91  LGLIGQGVDSVTAINEWLRTTDFSTLFDSQHYSTYLQWFEQKFPFFEISSSDIQARVLEI 150

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +    +    +             + M   +F F +DG     ++  L   L      
Sbjct: 151 SRSFGQAMLTTGTWLAANMASLVAHFLIMNFLVFSFLKDGERFIDRVRYLSP-LRAEQED 209

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I   + KV +S   G   IA  +G+V G    +AG+P+     +++    +   G  + 
Sbjct: 210 FIIESLRKVSKSVLFGSLFIAFLQGIVGGIGLAIAGIPALFWGTMMSFASLIPVLGTGLI 269

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +   +IYLLI G +  A  L +W  + +  +D  LRP +V    ++  +  F  ++GG+ 
Sbjct: 270 WVPATIYLLIVGKLKIAVFLLIWCGVLVTGIDTVLRPMIVREASRVSTIYVFLAILGGIN 329

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             G LG+  GP++++ + V+     +  ++
Sbjct: 330 AFGPLGILYGPLILSFLMVMLHIYGVEYQD 359


>gi|197335961|ref|YP_002155739.1| hipothetical membrane protein [Vibrio fischeri MJ11]
 gi|197317451|gb|ACH66898.1| hipothetical membrane protein [Vibrio fischeri MJ11]
          Length = 353

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 122/332 (36%), Gaps = 5/332 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I  ++      LK F   V+   II    +PI +   +K   S   ++       + L 
Sbjct: 20  AIAILVFWCFSILKPFMLLVVWGGIIATALYPIVTWGHNKFGISKGKVSAGLAFIGVVLL 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++PL+ L         ELV+               + + P     +  +  H S      
Sbjct: 80  VIPLVALSTGLYTSGSELVAGYQNGTISIPKPSINVKEWPLIGDKAYAFGIHASSNLESV 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +L         +  +       G  F+ + +S I        F  +     +    +   
Sbjct: 140 LLKYGEEVKAIVGKLASIVGSLGGGFIQFIISTIIAGA----FMANADKCERAFVLVANR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L   + + ++ +    +RS   G+  +A+ + ++ G      GVP+     ++  ++A+I
Sbjct: 196 LTGEHGEALTTLSKTTVRSVVQGVIGVAVIQSVMAGLGMAFVGVPAIGLWMLLVMLIAII 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                ++   V +Y+        A    +W  +     D  L+P L+    + P L    
Sbjct: 256 QLPPILALLPVILYVFSVDTTTTAVLFLIWCIVVSG-SDAILKPMLLSRGSETPMLVILL 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G +GG+   G++GLF+G V+++L   ++   +
Sbjct: 315 GALGGMAMSGIVGLFVGAVILSLTYQLFMVWL 346


>gi|304397899|ref|ZP_07379775.1| protein of unknown function UPF0118 [Pantoea sp. aB]
 gi|304354610|gb|EFM18981.1| protein of unknown function UPF0118 [Pantoea sp. aB]
          Length = 351

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 118/344 (34%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           ++   +    +++  ++ IIL  +        P+L A        P+ +  + +      
Sbjct: 4   LQREKIGQNILIKLAMLVIILAGVRAASDILVPLLLAAFFAIVLNPLVTMLMRR-GFRRG 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +    + C  ++    +      E  +L  ++    +  + V + L+       ++
Sbjct: 63  LAIGLVITVIFCALVLLGAIIASSM-SEFSDLYPQLRATMEQKMTVLQHLAAGFHINIST 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   +                     + +   AS     F     + + +++ + F   +
Sbjct: 122 DALVQRFD-----------------PNTMMNLASVALSGFSGAMTNTVLLVLTVVFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++ +    + P           K +       T++++  G+ +  + +L  V  
Sbjct: 165 VHHLPYKMRNAL--VNPKIRIAGLHKALKGVTHYLALKTLVSLITGIAVWLSLYLLDVKF 222

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  I+  IP   PI       +  L+  ++F+A  +         +    L P 
Sbjct: 223 ALLWGVVAFILNFIPNIGPIIAGIPPLLQALLLNSLFDAAMVAALFTAIHMVFGNMLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+G  + L  L  F  LV     +G +G+ +   L ++  ++ +
Sbjct: 283 LMGRGLGLSTLVVFLSLVFWGWLLGPVGMLLSVPLTSITKILME 326


>gi|167035177|ref|YP_001670408.1| hypothetical protein PputGB1_4184 [Pseudomonas putida GB-1]
 gi|166861665|gb|ABZ00073.1| protein of unknown function UPF0118 [Pseudomonas putida GB-1]
          Length = 356

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 117/350 (33%), Gaps = 12/350 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++F+   ++  L G  APVL+ +++ F    + ++   +    + 
Sbjct: 9   MQRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALE-RVRVPTR 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++     M    V +L L      ++  L +++         +   L +    + + 
Sbjct: 68  LAVMLVFALFMGALAVFMLVLVPLLWHQLITLFNELPGMLGKWQSLLLLLPERYPHLVSD 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E     +   +                +   F+     + ++  + ++ + I +FFF +D
Sbjct: 128 EQVLHAIESVRGEI--------GKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I + +         A   ++   + + I +   G  I  +  G+    A+   G+  
Sbjct: 180 RELIGRWVSGYLP-SQRALLNRVGSEMNRQIANYIRGKGIEILICGIATYIAFISLGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  +  ++P    +  T       L   G       L    AI   +    L P
Sbjct: 239 AALLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQFIYLMTVYAIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L    + L  +     ++      G  G+F    L  LI  +       
Sbjct: 299 LLFSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAWPRH 348


>gi|300711827|ref|YP_003737641.1| hypothetical protein HacjB3_12330 [Halalkalicoccus jeotgali B3]
 gi|299125510|gb|ADJ15849.1| hypothetical protein HacjB3_12330 [Halalkalicoccus jeotgali B3]
          Length = 343

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 68/350 (19%), Positives = 141/350 (40%), Gaps = 17/350 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       +  +R + +    +SL  +  F + +L A+I+ +   PI      +      
Sbjct: 1   MSTRSERSRTFLRIVAIGAGGLSLLIVLPFLSWILVAVILAYVLRPIDDRLSRRLG--PG 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A ++ +  + L ++P+L +      + ++L +                      +   
Sbjct: 59  LSAGLSILGGLFLVVLPVLVVLGVAANQARQLAATFD-------------PGDVARLDVV 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 +    +    + +     G   +            +  L    +   LF+  +D
Sbjct: 106 IAEHLGVQVDMATVHDAFSGAIKTGARGLVGNLFSIIGGLPELFLGFTVLFFVLFYLLKD 165

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G S  + L ++     P   +++      ++ ++ +G  ++A  + ++LG A+ + G+ +
Sbjct: 166 GESAVEWLRAVVPIE-PDVREELFEETGLLLHNSLVGTAVVAGAQAVLLGVAFLVLGLGN 224

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V   V T I AM+P     I +   SIYL + G    A  LF++GAI +  VD  LRP 
Sbjct: 225 VVFWIVTTFIAAMVPLLGASIVWIPASIYLFVVGRPVPAVALFVFGAIAISTVDNILRPM 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           ++    +L  + T  G+ GG+   G +GLFIGPV++ L  ++ +  +   
Sbjct: 285 VMRRGAQLSPVLTIIGIFGGIAVFGFVGLFIGPVVLGLTKLLIELLVREY 334


>gi|298241839|ref|ZP_06965646.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297554893|gb|EFH88757.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 385

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 125/357 (35%), Gaps = 14/357 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R   +    +    +  ++L     +      ++ A+++ +   P               
Sbjct: 15  RRRDIPLAILAWTALAGLVLWGASHIIHTLLLLIIAVLLAYALAPGVKLLHR--FMPRLL 72

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  V V+ +    +  +    + +++ L S V             L+    G  +  
Sbjct: 73  AILIMYVLVLSVLSFLIYLVVTTTIDQVRALASSVQTL----------LTPKGAGQLSPI 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             T         +I S     T+ ++   R A       ++  L ++ + +   +   DG
Sbjct: 123 EQTLGSIGISHTQISSFGSQITSRLEGAARDAVPLVSGVVNAILDLVLIAVLSVYLLNDG 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             IS  +     H+  A    +   + +++     G  I++   G+++G   ++  VP  
Sbjct: 183 TRISTWVRKNSPHVARA--STVLDTLQRIVGGYIRGQLIMSTLIGVLVGGGMFIFHVPYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           V LGV+  ++  IP    +   A+ + L +      A  + ++  I   +    + P +V
Sbjct: 241 VFLGVMAFVLEFIPVLGTLVSGAICVLLALTQGWLIALGVLIYFIIVHILEGDVIGPRIV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G  + L  + +   L+ G    G+ G      ++ ++ V+     +  +  + +   
Sbjct: 301 GQAVGLHPVISIAALIAGAELFGIWGALFAAPVVGVLQVLVVALWINWRHTRPEQFE 357


>gi|269118863|ref|YP_003307040.1| hypothetical protein Sterm_0224 [Sebaldella termitidis ATCC 33386]
 gi|268612741|gb|ACZ07109.1| protein of unknown function UPF0118 [Sebaldella termitidis ATCC
           33386]
          Length = 345

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/326 (13%), Positives = 101/326 (30%), Gaps = 16/326 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
            +  L  +     P + A +I +   P       K         +I    VM +FI  +L
Sbjct: 30  FVPFLNVILSALIPFILAFVITYVLEPAVEFLEKKLNFKRMSAFMIVYFVVMFVFIAMVL 89

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    + +   ++S ++              +      +  ++                
Sbjct: 90  ALIPEVVNQFNSMISFIINHQGEIQLKVSKYIEHSHINISEIVYK--------------- 134

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            LK     +I    +    +   +   +    I LF   +D  S+  +L           
Sbjct: 135 -LKEWFFRYIFSLLNSGISLIKAFFSIVFMTPIFLFLLMKDYRSLKMKLKLRILEADRRD 193

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I R +  V+     G  I     G ++   + + G+   +    I  +  +IP   P
Sbjct: 194 IIIIMRNIDVVLGKYVKGKLIDCFLVGTLVYIIFSILGLKFALLFSFIIGVTNLIPYVGP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +     +    +  +      + +       +    L P++    +++  + T   L+ G
Sbjct: 254 VIGAIPACLFALLQSFNIFIGVLIAIVFIQTLESVFLVPYITSKTVEIHEITTLLVLLIG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
               G++G  +   +  +I VI++  
Sbjct: 314 GSLFGIIGALLAIPVYLVIKVIYEYY 339


>gi|170759215|ref|YP_001787883.1| hypothetical protein CLK_1950 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169406204|gb|ACA54615.1| putative membrane protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 342

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 113/319 (35%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++     K  +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYVLKPIHTFL-KHKGINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    ++   +   ++ +        +  K     ++  +     +    
Sbjct: 90  IKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKF 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + F             +  L    + I +++F   G  I Q+   +         K +  
Sbjct: 150 VGF------------GENILDYAVIPIIVYYFLAAGDKIIQKFFIIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMILAIPIGVIMKIIYED 336


>gi|160946181|ref|ZP_02093392.1| hypothetical protein PEPMIC_00143 [Parvimonas micra ATCC 33270]
 gi|158447704|gb|EDP24699.1| hypothetical protein PEPMIC_00143 [Parvimonas micra ATCC 33270]
          Length = 394

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 103/335 (30%), Gaps = 15/335 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFIS-----------KKEESSTFLAVIATVSVMCLFI 75
           ++    P +    I +        F +           K +       +I         I
Sbjct: 43  IRYVLMPFIVGGSIAYILNFFVKFFENCFLRFEFFKKVKYKYIRMSAIIITYFIFFTFII 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L ++       +K  V +  +    G         +   +  S      ++   +   
Sbjct: 103 LLLKYIIPQFYSNIKMFVDRTPIFIDMG---VEKAKYMLQNVELSSEIRSFINGKLTEFA 159

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T   T+ I ++  FA+R   +FL+  L+II     L+        + + + ++    
Sbjct: 160 TFSTTFLTDMIPWVATFATRVVSLFLNIILAIIISGYLLYDKENFSRILKKFMIAVFPEK 219

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 KI +     ++S  L   I AI  G+          +   +    I     +IP
Sbjct: 220 ANRITFKIVKRFDYTLKSYLLAKGIGAIIVGITFYIILLFMKIDYALLFAFILGFTNLIP 279

Query: 256 GGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                +    ++I LL            +   I   I    + P + G  + +      F
Sbjct: 280 WFGCYLGAIPIAIVLLFTSTFNTVLWFMIIVVIVSMIDANVISPRVSGKSLGISSFWVIF 339

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            LV G    G++G  +   +  +I    KE I A 
Sbjct: 340 ALVLGGSLFGIIGFLLSVPVFVVIYTTLKEYIEAR 374


>gi|293376003|ref|ZP_06622261.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|292645380|gb|EFF63432.1| putative membrane protein [Turicibacter sanguinis PC909]
          Length = 382

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 113/332 (34%), Gaps = 10/332 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS----------KKEESSTFLAVIATV 68
           +I+ ++        PV+ A  I +  W                  K++ SS     I+ +
Sbjct: 36  LIIAAIKEFMAVITPVIIAFAIAYILWKPTVFVEKNLQKMTKKLMKRDLSSGASRGISLL 95

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++ +L LF   +  +   +  +V +            D       S +  + ++
Sbjct: 96  IVVSLVVMLILLLFNTIIPPIITNLKLLVDSIPALHQTFNKYIDDISPYIQSFITEEQIN 155

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                      ++ T  + F     +      +    +II  I  L        S+ +  
Sbjct: 156 EITRAITNLLNYIATQILQFGTGMITNMTGFIISVLTTIILSIYFLKDKETLTRSVYKAG 215

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L         ++  + +  V     +   I AI  G+         G P  + +G++T
Sbjct: 216 QTLLTPNGLKRSQQFLKDLDAVFGGFLIAQLIAAILAGIFSSLILIAIGHPFALLVGLVT 275

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IP   PI    +   L +  ++  A    +   I   +    ++P L+   + L 
Sbjct: 276 GVANVIPYVGPILGAVLGGLLGLFSSLKMAILSLVLLTIYQQLDANVIQPKLLSNSVGLN 335

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +     ++ G   +G+LG+ +     AL  +
Sbjct: 336 PVWVLIAILIGGHYLGMLGMIVSIPSAALFQI 367


>gi|282875485|ref|ZP_06284356.1| putative membrane protein [Staphylococcus epidermidis SK135]
 gi|281295512|gb|EFA88035.1| putative membrane protein [Staphylococcus epidermidis SK135]
 gi|329726282|gb|EGG62751.1| putative membrane protein [Staphylococcus epidermidis VCU144]
 gi|329733389|gb|EGG69722.1| putative membrane protein [Staphylococcus epidermidis VCU028]
          Length = 361

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 105/341 (30%), Gaps = 11/341 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +       +   F P L +  + +   P  +                  + ++ +  + +
Sbjct: 29  VFAPIATIIGSVFLPFLISGFLFYICLPFQNILEKW-GFPRWASITTIFIGLIVIIAIVV 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F+    +  +  L+ +     +    +  +                 L    + +I   
Sbjct: 88  SFIAPIIISNINNLIKQTPSLQKEAEQLINFSLR----------QMDKLPDDVTHRINKA 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +G   I   +  +   F+     +I +   L +  +D       +    +     
Sbjct: 138 VKSMGDGATSILSNSVSYITSFISTVFLLIMVPFFLIYMLKDHEKFIPAIGKFFKGERKV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   ++S   G   ++I  G++L   Y + G+P    L +   +  +IP   
Sbjct: 198 FVVDLLKDLNFTLKSYIQGQVTVSIILGIILYIGYTIIGLPYTPLLVLFAGVANLIPFLG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A +  L I         + +   I   +    + P ++G  + +  L     ++ 
Sbjct: 258 PWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVMGKSLSIHPLTIIVVILA 317

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G   + +   L A+I  +        +   +K +SN
Sbjct: 318 AGDLGGFTLILVAVPLYAVIKTLVSNIFKYRQRIVDKANSN 358


>gi|56416572|ref|YP_153646.1| permease perM-like [Anaplasma marginale str. St. Maries]
 gi|222474939|ref|YP_002563354.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Florida]
 gi|56387804|gb|AAV86391.1| permease perM-like [Anaplasma marginale str. St. Maries]
 gi|222419075|gb|ACM49098.1| permease perM-like protein (perM) [Anaplasma marginale str.
           Florida]
          Length = 450

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/352 (12%), Positives = 110/352 (31%), Gaps = 13/352 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +      V ++ ++        A ++ +   P+ +   S         +     S + +
Sbjct: 95  LLGAGCAAVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLES-IGLPRPVSSFAIIFSSVGV 153

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVL-----ANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           F   L+FL      +   L   +V        +           +        +  + LS
Sbjct: 154 FAALLVFLVPIAYSQTLALAKLLVDKLPFAGVEGIKNALLAYDMLRYDGVIGAMNPEALS 213

Query: 129 HPQSLKILSETFLKTNGIDF-----IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      F+K     +     +     + G+        +   ++ LF+       
Sbjct: 214 PHNLFSGNHVEFIKLLDGLYKNFIKVAVGVVQSGVGIGTIAAKVFITLLLLFYILGSWPI 273

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +    +    +   +      +  ++ +   G T + +   +     + + G+   + 
Sbjct: 274 VVKNALLMVPRHYLEGFSHCMSKIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGLEYSLV 333

Query: 244 LGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           LGVI+ IM  IP   PI        + +L   +      + L   +   +    + P L+
Sbjct: 334 LGVISGIMTFIPYIGPILCASLGACLAILQDFSWTGTAAVILVFVVGNVVESNIITPVLL 393

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              + L       G+V      GLLG  +   + A+++V+   ++   K + 
Sbjct: 394 SKKLDLNPGWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLTHFAVEKYKHSN 445


>gi|16331485|ref|NP_442213.1| hypothetical protein sll0063 [Synechocystis sp. PCC 6803]
 gi|8928467|sp|Q55147|Y063_SYNY3 RecName: Full=UPF0118 membrane protein sll0063
 gi|1001141|dbj|BAA10283.1| sll0063 [Synechocystis sp. PCC 6803]
          Length = 395

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/321 (17%), Positives = 106/321 (33%), Gaps = 9/321 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            +     + +  F   L A +I F      +    K+       A    ++ + +F    
Sbjct: 46  ALSSIFGYFESLFVISLIASVIAFLLNYPVAWLE-KQGAKRFVAASFVFLTALIIFTALG 104

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + + ++LV+++      G      L      +     W  +            
Sbjct: 105 VTLIPLALSQAQQLVARLPDWLDSGQKQLVLLDQKAEILG----WPVNFDGLIPQINSRL 160

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                N        A    +  +   L ++  II  F+       + Q +       F  
Sbjct: 161 AAELQNLAGSTLNLALSLTVFTVVRLLDVLLTIILTFYLLLHTDDVWQSIIGWLPERFQK 220

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            +        +  ++ FLG  + A    L L S + L  VP  +  G+   +MA+IP G 
Sbjct: 221 PFSDTL---RRSFQNYFLGQLVSATCMALGLISGFLLLKVPFGLLFGLTVGVMALIPFGG 277

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +    +  +L+   +I  A  L     +   IV+  + P ++G    L        L+ 
Sbjct: 278 SV-GIVLVTFLVALRDIGMALQLLAVALVIQQIVENGIAPRVLGSVTGLNPFWVLISLLT 336

Query: 319 GVRTMGLLGLFIGPVLMALIA 339
           G R  GLLG+ +      +I 
Sbjct: 337 GARIGGLLGVIVAVPSAVMIK 357


>gi|300854400|ref|YP_003779384.1| putative permease [Clostridium ljungdahlii DSM 13528]
 gi|300434515|gb|ADK14282.1| predicted permease [Clostridium ljungdahlii DSM 13528]
          Length = 342

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 110/335 (32%), Gaps = 13/335 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+ +    +++     L+     +  + +I +T  PI    ++    +    A+I    
Sbjct: 15  TIVIFAAAALLVAKSSVLREMLYLIFISFLIAYTLKPIEIKMVN-AGVNKKVSAIIIIGI 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L +     L      E  +L +               L  I G      L       
Sbjct: 74  LILLVVSTFALLIPSLFKESLKLNATAANIQMLIDKFYAKLKLIQGNRTIHLLVNNLNRR 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S             I  I      F M   +  L ++ + I  ++F  D   I++ L 
Sbjct: 134 IDSE------------IASIFVKIFDFLMNMGENILYLVVIPIITYYFLADDKCINESLL 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S          KKI     K++        +++   G+          V   + L ++ A
Sbjct: 182 SAFPVNSRKPIKKICCHADKILGRYIASQIMLSALVGIATFFILIFLKVEFPIILSILNA 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +IP   PI     +I + +  +   A    +W  +   I    L P + G  I +  
Sbjct: 242 FFNIIPYFGPIFGALPAIVIALTKSPETALWTAVWLYLLQQIEGNILSPKVTGDSIDMHP 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L     L+ G +  G +G+ +      L+ VI+++
Sbjct: 302 LIVILLLIVGGKISGFIGMVLAVPFGVLVKVIYED 336


>gi|284993127|ref|YP_003411682.1| hypothetical protein Gobs_4772 [Geodermatophilus obscurus DSM
           43160]
 gi|284066373|gb|ADB77311.1| protein of unknown function UPF0118 [Geodermatophilus obscurus DSM
           43160]
          Length = 475

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 88/284 (30%), Gaps = 14/284 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +        A+   V  +      +  +    +    +L  +     +    +       
Sbjct: 172 RHGWPPVLAALTMLVVGLGTVSGIITLVVQQVVTGFGDLAEQAGQGIEQVRDLV------ 225

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                                +        +  D +   A    +   +    ++  +  
Sbjct: 226 -------VRTFPVTRTQLENAVTQLQQTLVDNQDVLASGALTTAVTVGEVATGVLLALFT 278

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFFF +DG SI   L  L      AY  + +R   + + S       +A+ + + +G   
Sbjct: 279 LFFFLKDGRSIWLWLVGLFPRDSRAYVDEAARRSWRTLISYVRATAAVAMVDAVGIGIGL 338

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + GVP  + L  +  + A IP     ++ T   +  L+      A          + + 
Sbjct: 339 AVLGVPLVIPLAALVFLGAFIPIIGSFLAGTVAVLVALVSQGPVTALVALAIVVAVMQLE 398

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
              L+P L+G  +++  L     +  G+   G+ G  I    +A
Sbjct: 399 GHVLQPLLLGRAVRVHPLAVVLAIAAGLLVAGIFGALIAVPTVA 442


>gi|296120548|ref|YP_003628326.1| hypothetical protein Plim_0276 [Planctomyces limnophilus DSM 3776]
 gi|296012888|gb|ADG66127.1| protein of unknown function UPF0118 [Planctomyces limnophilus DSM
           3776]
          Length = 423

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 67/347 (19%), Positives = 147/347 (42%), Gaps = 8/347 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +++  IL+    +  +   +L A ++   + P++SS ++     ++  A   T  V
Sbjct: 21  VLSVVMVIFILMFYQVMAPYLMSLLLAGVLAILAQPMHSSSLAYCRGWTSLAAAATTTGV 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSK------VVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + + ++P+LF      LE+   V                             +  +    
Sbjct: 81  VVVIVLPILFAILLTGLELSVFVQDNLSDSSWEQIKSTVSLRIDQFVQRIMPLMPAGADQ 140

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +       I ++      G   I           +++ + +   ++ L+FF  DG  I
Sbjct: 141 EAVKEQLLTGIQNQVKQLGVGASEIASSTWGIIGTLINFFIQLTVCLLGLYFFLADGPRI 200

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                +L   + P Y +++     KV RS  +G  + A+G+G+ +  A  + G+     +
Sbjct: 201 LHGAQNLIP-IQPEYQQQVFDQFTKVTRSVVMGTLVAAVGQGIAMSLAVGVLGIGHIFVI 259

Query: 245 GVITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++T + AM+P            IYL  +G+ F A  LFL+G + +  +D  +R + +  
Sbjct: 260 GMVTTVAAMVPMIGAAGVYVPMSIYLATQGHYFTAAGLFLFGFLVISSIDNVVRAYTLSS 319

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +++  L  F  ++GG+   GL G+F+GP++ +++  + K     +K
Sbjct: 320 NVQMHPLLGFVSILGGLEAFGLWGIFLGPMIASVLYALAKIFNQELK 366


>gi|146302325|ref|YP_001196916.1| hypothetical protein Fjoh_4598 [Flavobacterium johnsoniae UW101]
 gi|146156743|gb|ABQ07597.1| protein of unknown function UPF0118 [Flavobacterium johnsoniae
           UW101]
          Length = 363

 Score =  112 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 115/351 (32%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +++ I+L  LY ++     +  +LI+   + P+     +K + S++  A    +
Sbjct: 13  RALATILVIGIVLYFLYEIQTVIVYLCVSLILCLIANPLVLFLKNKLKFSNSMAAATTII 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  +L      + +   L           +      +         E +     
Sbjct: 73  FFIFLIVGFILLFVPLIISQANNLA---------LLDTAHLQTKFMETEKHLEEYFNIQH 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  I            +  RF +       D  + ++ +    FFF +D      Q 
Sbjct: 124 IDLNKVIKDSKLTSVLDFSYFTRFINSIINFMADMGMGLVSVFFITFFFIKDQTIFKDQA 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +               +  ++   F+G+ +  I   ++      + G  +   +  + 
Sbjct: 184 RRILPDSNEDKILNSITKINHLLTRYFIGLLLQLIVVFILYLIVLLIFGNKNAFVIAFLC 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIF---------NATCLFLWGAIELFIVDKTLRPF 299
           AI+ +IP   PI  T ++  L +   I              + +   +   I +   +P 
Sbjct: 244 AILNIIPYLGPIIGTTLAAILTMISMIGQDFQSEILPKTIYVVIGFLVVQAIDNNISQPI 303

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +    L  F  ++    T G++G+ I      +I VI KE     K
Sbjct: 304 ISSKSVNSHPLEIFLIILISGITFGIVGMIIAVPAFTMIKVILKEFFPNNK 354


>gi|27904620|ref|NP_777746.1| putative inner membrane protein [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|46397200|sp|Q89AW1|Y117_BUCBP RecName: Full=UPF0118 membrane protein bbp_117
 gi|27904017|gb|AAO26851.1| putative membrane protein [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 368

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 76/353 (21%), Positives = 144/353 (40%), Gaps = 6/353 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           RE M  PQ I   + +FI I+ SL+ ++ FF     A ++   +WPI+         +  
Sbjct: 5   REGMDLPQVIFSLVFIFIMIISSLWIMRPFFLGFAWASMVVVATWPIFLKLQILLWGNRA 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V+ T S++ +FI+P++ L    +     ++S +         +         G+   
Sbjct: 65  CAVVMMTFSLLLVFIIPIVCLVNSLIDNSTSVISWLSSDKFRFPSLEWLQDIPIIGIKLF 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             + K L+   +  I           +F    A  FG   L     +IF  +  +    +
Sbjct: 125 SSYQKLLNEGGAELITKVQPYMGKTTEFFVIQAGHFGRFILHLIFMLIFSALLYW----N 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +      L       +  +  + IR+  LG+ + A+ +G++ G    ++G+P 
Sbjct: 181 GEKVQSVIRHFAIRLGSKSGDSVVLLAGQAIRAVALGVVVTALVQGILSGIGLAISGIPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L ++  I  ++  G         I+L   G     T L +W  +   I+D  LRP L
Sbjct: 241 SSLLMMLIIIFCLVQLGPLPVLIPAIIWLYWNGKTTWGTVLLIWSCVVC-ILDHILRPIL 299

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +   + LP +    G++GG+   G++GLFIGPV++ +   +    +  I    
Sbjct: 300 IRIGVDLPTVLILSGVIGGLIAFGMIGLFIGPVVLIISYRLISSWMDEIPAPN 352


>gi|326391989|ref|ZP_08213490.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325991974|gb|EGD50465.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 336

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 122/343 (35%), Gaps = 16/343 (4%)

Query: 12  MRWMIMFIILVSLYFLKG------FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + ++I+  I +  +F+K         +P L   +I +   P+   F SK   S+    ++
Sbjct: 3   LLFLIIGAIGLLYFFIKNWVSIKNILSPFLFPSLIAYLLNPMVKFFNSK-GFSTFLSILL 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + V  + +    ++    + E+   V  +    +    +   L          +    
Sbjct: 62  VFLIVALVILFFSFYILPLLINEIVIFVKMIPFYTKELQKILIQLKFNYFSYLPPQFEKV 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +  +L  L  + +       +           L   + +I + I  F+  +D     
Sbjct: 122 LDKNLNALNNLFASRVDLVFKSTVA---------ILKDIIDVIIVPIITFYLLKDKNVFE 172

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++++ +    +   +  + + + K++         ++I   +       L  V     +G
Sbjct: 173 KEIERMIPSKYHDSFFALLKKIDKILSKYIRAQIYLSIFVAIFTSIGLSLIKVKYAFLIG 232

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+ +IP   PI     ++ + +  ++       L   +   I +  + P ++   +
Sbjct: 233 ILAGILNIIPYIGPILSIIPAVLIGLLDSLSKGFWALLVCLLVQQIENAFITPKIISDSV 292

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L  +   F L+ G    G+ GL +   ++A+  VI  E  + 
Sbjct: 293 GLHPITVIFSLIAGEELFGVWGLLLSVPVVAIGKVIVTEIFIE 335


>gi|326424274|ref|NP_762641.2| putative permease [Vibrio vulnificus CMCP6]
 gi|319999660|gb|AAO07631.2| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 360

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 119/346 (34%), Gaps = 3/346 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +   I    I  I++V  +    F   +L AL++    +P+  +   K    S+  A + 
Sbjct: 17  STSLIRFAAITLIVIVCWWAFLPFLPILLWALVLAIALYPLKLAIERKLGLRSSRSATLV 76

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  + +   P   +      +  E +                + + P            
Sbjct: 77  AVIGVLVLGTPTAMVGNSFASKTLEALDSYRNGTLAVSKPTDSVKEWPLVGEKVYAAWDE 136

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +    + I        +   ++   A+           ++I   I L +      SI +
Sbjct: 137 AAVNLPVFIDKHQPQIKSIFGWVFDSAAGAAKSVFVLIGAVIIAGIMLAWAEPASASIRK 196

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S  + +      K+       +R   +G+  IA    ++ G+   LAGVP+     +
Sbjct: 197 IFISFTDPIKGPSLHKL---TTATLRQVAVGIIGIAFLTAMIFGAIVALAGVPAASLFTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  + A++     +        L    +      +F    I    +D  L+P ++G  + 
Sbjct: 254 IALVFAIVQLPVTVVALVAVAVLWSGDSGTAHNAIFTVLIIAASFIDNFLKPIILGRGLD 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P      G VGGV + G+LG+F+G   +A    ++ + + +  + 
Sbjct: 314 VPMPIILIGAVGGVMSGGILGMFVGAAFLATGYQVFMQWVESESKQ 359


>gi|327330561|gb|EGE72308.1| putative permease [Propionibacterium acnes HL096PA3]
          Length = 386

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 118/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLMGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|326575175|gb|EGE25103.1| hypothetical protein E9W_04228 [Moraxella catarrhalis CO72]
          Length = 415

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 103/342 (30%), Gaps = 3/342 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---STFLAVIAT 67
           I   + + ++L+S Y+L   +  V +++++      +                    I  
Sbjct: 10  IFMMVAVVLMLLSFYYLIHVWLIVFASILMAVWLLSLVEYLTLIPWVGQYLKKLPHGILL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             V+   +  L  L      E+   +  + L                     +       
Sbjct: 70  TMVLMGLVGVLSTLAALFGHELALQLENLKLLVPQAFEYMNQYLTQYLQTHPAVYEWLAG 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +     T   D    +   +    +    +++ + I   F         + 
Sbjct: 130 LEWARELRDNPQQFLTRFSDGAMAYLPTYLGGMVSGMGTLVVITIIGLFLAISPSVYRRS 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++         + +     + ++   LG  ++    G+  G A WL G+P  +ALG I
Sbjct: 190 FVAMVPKDSRDKAEYLLDRSYRSMQQWLLGQLVVMAFVGIATGIALWLMGIPFALALGFI 249

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++  +P   P       + L +  +      + L   +   +    + P +    + L
Sbjct: 250 AFLLDFVPVLGPWLSAIPILLLTLIVSPKMLLWVALMIVVVQQLESYVISPIVQNRMVDL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P +      V      G+LG+ +   LM ++ V  +   +  
Sbjct: 310 PPVALLLSQVIMGSITGILGIALATPLMVMVIVWVQVLYIKF 351


>gi|299538219|ref|ZP_07051504.1| hypothetical protein BFZC1_19470 [Lysinibacillus fusiformis ZC1]
 gi|298726421|gb|EFI67011.1| hypothetical protein BFZC1_19470 [Lysinibacillus fusiformis ZC1]
          Length = 363

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 109/341 (31%), Gaps = 7/341 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    +  LK  F P+L   ++ + + PI      ++        +     ++ +  +  
Sbjct: 29  IFSPLVIILKAIFVPLLLGGVLYYVTEPIQRFLEKRR-FPRWGSILTIVFGLIAMIGIFG 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +      ++ +LV    + +       + L++             +     +  I   
Sbjct: 88  WIIGNPIAEQVNKLVKNAPMISTSISTSIQQLTEY------VTQNKDNFPQELNDVIKKM 141

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +      +    F    +   L  I +     F  +D    +  +          
Sbjct: 142 ANSVQDIAVVTSKGFVSFLQSIVSVSLLAILIPFFFIFMLKDHEKFAPSIYKYFSGERQQ 201

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           + KK    +  V+R+   G   I+    L++   Y + G+   + L +    M MIP   
Sbjct: 202 WVKKTLSEIDDVLRTYIQGQLQISFLLALIMYVGYLIIGLDYSLLLVIFAFFMNMIPFIG 261

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P    A ++ + +  +      + +   +   I    + P ++G  + +  L     ++ 
Sbjct: 262 PWIAFAPALIVAVIQDPILVVWVSVVTLVAQQIDSNFITPNVMGKSLDIHPLTVITIILA 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G +G+ I     A++ VI           K+K + +
Sbjct: 322 AGNIAGFIGIIIAVPFYAVLKVIVSNIYDQRNAIKKKATKS 362


>gi|281417731|ref|ZP_06248751.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
 gi|281409133|gb|EFB39391.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
          Length = 360

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 114/341 (33%), Gaps = 2/341 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +   L  + ++ +    I ++    L  +FAP L A  I     P+    + K +    F
Sbjct: 3   KRIKLVIRLVLIFGGTVIGILLGLRLAIYFAPFLIAFAISSMIEPVIRFLMKKLKFRRKF 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+++ +  + +  + LL LF     E+  L S      +        L +   G+    
Sbjct: 63  AALVSLLLGLSMIAILLLMLFSKLYNEITSLSSSQPEFWKEAYQNISNLIN--RGLNIYF 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++   S  + S +   ++ +D   +      +      + I   I++ +F   D 
Sbjct: 121 GLPSEVTAQISNMVSSLSNSVSSLVDSFVKGIYNTAISIPQMVIFIFVTILSTYFISSDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   +              I   +   +        I+       L   + + GV   
Sbjct: 181 DRIYDYIKDNVPDALLNKIIDIKDSMFTALFGYVKAQLILMTITFCELSLGFTIIGVKRP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LG++ + +   P                           L   + + ++ + + P +V
Sbjct: 241 ILLGLVISFIDAFPVLGTGGVLVPWAIYEFLTKDIRMGVSLLILYVIVLVIRQMIEPKVV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G  I L  L T   +  G++  GL GL +GP++  +   I 
Sbjct: 301 GEQIGLHPLMTLITMYLGMKFFGLPGLILGPIVTLIFKNII 341


>gi|254410220|ref|ZP_05024000.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196183256|gb|EDX78240.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 389

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 112/340 (32%), Gaps = 17/340 (5%)

Query: 6   LNPQGIMRWMIMFIILV----SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              + ++ W+++ +       +L ++    + +L+A +I F           +     T 
Sbjct: 7   PIQKVLITWLLVLVTGWVTLSALSYVGEIISILLTASLIAFLLNYAVRVL--RPFLPRTV 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++  +      +   L L      + ++LV++     + G                  
Sbjct: 65  AAILVYLVAAVFVVFIALTLAPPVFNQGRQLVTRFPELLEQGQQQLVDFQAW-------- 116

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               +L     +             + I        +    + +  I +++  F+   DG
Sbjct: 117 SVEHNLPFDVRILGSQMLARIQAKAEAIASTGLGLVVGTFSWFIDFILVLVLSFYMLIDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + + S+           +++ + + ++    G  ++ +     L   + L  VP  
Sbjct: 177 ERLWRGITSIVSAKIRY---GLTQALRRNLQRFVSGQLLLGLFMATTLTLGFRLLQVPFF 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   V    M +IP        A  + ++   + + A  +         I D  + P ++
Sbjct: 234 LLFAVFIGFMEIIPFVGATLGIATVVIVVAFIDWWLALEVLGVSVALQQIKDNLIAPRIM 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G    L  +     L+ G +  G+LG+ +   +  ++  +
Sbjct: 294 GNLTGLSPVIILTSLLLGAKIGGILGVILAIPVTGVVKSL 333


>gi|225868492|ref|YP_002744440.1| membrane protein [Streptococcus equi subsp. zooepidemicus]
 gi|225701768|emb|CAW99160.1| putative membrane protein [Streptococcus equi subsp. zooepidemicus]
          Length = 384

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 111/337 (32%), Gaps = 13/337 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P L    + +    + S++               +    F  ++A  + + L +  +  
Sbjct: 49  LPFLYGAAVAYIVNIVMSAYERAYTYTLKPFPFAMKARRGFCMLLAYFTFISLIVWIISI 108

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L      A +  I        I   +       K      +        
Sbjct: 109 VIPDLIASISSLTQFDTRAIKEVISDLGHNKLIARAINYIGGDAKLTETITNYSQQLLKQ 168

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 169 FIGVLTG-ILTSVTAVASAIINVVISFVFSLYVLASKEELCQQATTLIDTYTG-KYAKTV 226

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++    R  F+  T+ A+  G +     ++  +P    +GV+ A  A+IP     
Sbjct: 227 HYLVSLLHSRFRGFFVSQTLEAMILGSLTAIGMFILQLPFAGTIGVLVAFTALIPVVGAS 286

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 287 IGAAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIYPRVVGGSIGLPAMWVLMAITIGA 346

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              G++G+ +   L A +  + K+ I   +  +++ S
Sbjct: 347 ALKGIVGMIVAVPLAATLYQVIKDHIHKKQALQDRQS 383


>gi|83647590|ref|YP_436025.1| permease [Hahella chejuensis KCTC 2396]
 gi|83635633|gb|ABC31600.1| predicted permease [Hahella chejuensis KCTC 2396]
          Length = 353

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 111/346 (32%), Gaps = 12/346 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + + ++ ++++   ++ + F     APV+ +++I +    +      +      + 
Sbjct: 11  KYFSDEEAVILFILLVAGVLVMAFFGAMLAPVIGSIVIAYILQGLVIKLQ-RLGMGHIYA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +      + + +  +L +    + ++  L  ++     +   + + L +        + 
Sbjct: 70  VLSVFALFVGVTLASVLLILPLMVRQVTSLFQELPSMMTNLQTLIKLLPE--------QY 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                           T   T    ++  F+       L   +  + + I +FFF +D  
Sbjct: 122 PQFFTEESVVGLSRQLTTEVTKITQWVFSFSLSSIPTLLAIMIYAVLVPIMVFFFLKDRG 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I   L SL           I         +   G  +  +  G+    A+ L G+   +
Sbjct: 182 VILNSLSSLLPTE-RRLMTNIWAEANIQFANYIRGKVLEILIVGVATYVAFVLMGLNYSL 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L V+  +  +IP       T       L   G   +   L +   +   +    L P L
Sbjct: 241 LLAVLVGLSVVIPYIGAAIVTIPVALIALFQWGWGPDFIWLMVAYGVIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + L  +     ++      G+ G+F    L  L+  I+    
Sbjct: 301 FSEVVNLHPVVIIVSVLVFGGLWGIWGVFFAIPLATLLKAIFSAWP 346


>gi|154495831|ref|ZP_02034527.1| hypothetical protein BACCAP_00111 [Bacteroides capillosus ATCC
           29799]
 gi|150275029|gb|EDN02077.1| hypothetical protein BACCAP_00111 [Bacteroides capillosus ATCC
           29799]
          Length = 377

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 99/340 (29%), Gaps = 13/340 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSF----------ISKKEESSTFLAVIATVSVMC 72
             + + G F P+     I F        F             K  S       + + +  
Sbjct: 32  LFWTVIGLFQPLFIGFAIAFVLNRSCQLFSQLYDRGLGRTKAKNLSRPLAVATSYLLMFV 91

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---RWLSDIPGGMWASELWTKHLSH 129
           L I     +    +  ++  ++ +     +         WL+ +   +   +L   + S 
Sbjct: 92  LIIAFFSLVLPKLVESIQIFLNSINGYMLNIQIWLNKQEWLAPLFSSLHLDKLDLSNFSD 151

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +       T  +  +    S    I +   LSIIF +  L           + L 
Sbjct: 152 LIKGALNGVVNTLTTAVPQLLTITSNIISIVVTGFLSIIFSVYMLSGKATLLSQCRRVLK 211

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +       A+   +  +      +   G  I A   G +               +GVI  
Sbjct: 212 AYAPPKVEAWVTDVVHLTANTFTAFVSGQLIEACILGGLTALGMLFIQADYAPLIGVIVG 271

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             A+IP        AV+  LLI  +        ++           + P +VG  + LP 
Sbjct: 272 ATALIPMVGAFLGGAVAAVLLIMVSPLKTLIFLIFLLCLQQFEGNVIYPRVVGNNVGLPA 331

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +     +  G      +G+ +   + +++  + +  +   
Sbjct: 332 IWVLAAVTVGGGLFQFVGILVSVPVASVLYTLLRRDVHRR 371


>gi|51892636|ref|YP_075327.1| hypothetical protein STH1498 [Symbiobacterium thermophilum IAM
           14863]
 gi|51856325|dbj|BAD40483.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
           14863]
          Length = 359

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 106/327 (32%), Gaps = 3/327 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + +    + +      P + A ++     P  +  + +     +    +  +  + + +
Sbjct: 21  FLVVSWALITYALPIVMPFVLAWVLAEMMDPAVTWLVRRARMPRSLAVAVVLLFFVGIMV 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                   Y + E++ L+  +      G+ +   +      +  S   +  ++  ++L  
Sbjct: 81  ALFTVGVAYVVGEIRALIRNLPYLYAAGLDISSQVLLYLEDLVGSLPESVQVTIGENLGK 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L                   F      + +++I   +A FF  RD   I   L SL    
Sbjct: 141 LQANLGTYLET---LARRLGFITSVPGFLINLIITFVAAFFITRDRQEIGAFLLSLFPAK 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    +++   V            ++ +   LV      + G    V  G+   ++ ++P
Sbjct: 198 WRDQLRQVRVEVLTNAIGWAKAQVLLILMTMLVSMLGLAIIGADYVVLAGLAIGLLDILP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P +  A  I               L     +  + + L   +VG  + L  L     
Sbjct: 258 IVGPGALYAPWILYSAFTGRLAFGVKLLIVYAVVSALRQVLESKVVGDRVGLHPLAVLLS 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  G++  G LG+  GP++  L+  + 
Sbjct: 318 IYLGIKFFGALGVVFGPLITILLKAMV 344


>gi|157828826|ref|YP_001495068.1| hypothetical protein A1G_05375 [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157801307|gb|ABV76560.1| hypothetical protein A1G_05375 [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 351

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/350 (15%), Positives = 120/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTVIFWLVFLGLFISGFMLISDAIKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL           I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILAILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   +          P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLIIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K ++
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSQ 345


>gi|330900067|gb|EGH31486.1| hypothetical protein PSYJA_21922 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 359

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 112/348 (32%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S+   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSALE-RLRMPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + +V LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|190572447|ref|YP_001970292.1| putative transport protein [Stenotrophomonas maltophilia K279a]
 gi|190010369|emb|CAQ43977.1| putative transport protein [Stenotrophomonas maltophilia K279a]
          Length = 369

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 111/336 (33%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI      K        A++   + +
Sbjct: 32  LVVLATLAVGYTLWAAQDIILPVLLAMFFALVGNPILRLLQ-KLWIPRALGALLILGAGL 90

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + L    M   +E   ++    +    + + +                 S+ +
Sbjct: 91  GVTGSLAVQLIGPAMEWAQEAPQQLRKVARQVQDLTKPVQQANQAAENFARVAGGDSNHK 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I ++       +   PR A+    + L              FF   G S+ +   +L
Sbjct: 151 VQVIRTQLDDPYRMLTRAPRLAASVLAVVLLTL-----------FFMIYGQSLQRAAIAL 199

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +   I R + + +    L +++I    GLV      L G+     +  G + 
Sbjct: 200 FPNRQQQRFTTDILRSIEREVSRYVLTISVINTLVGLVFAGVLMLLGIGLQEALLWGTVA 259

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+   A+ + +  +   +   A            +  + + P ++G  +K
Sbjct: 260 ALLNFAPYVGPLIGVALMLLMGFVEFRDPLQALLPAAAYLGLHTLEGQMVTPIVLGRRMK 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     L+      G++GL +   L+  I ++ 
Sbjct: 320 LSPLVLILALMVFGWAWGMIGLLLAVPLLVCIKLVL 355


>gi|312870325|ref|ZP_07730452.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
 gi|311094146|gb|EFQ52463.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
          Length = 369

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/369 (13%), Positives = 123/369 (33%), Gaps = 25/369 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFI---- 52
           N Q +   + +F++ +++ F   F            P+L   +I +    +   +     
Sbjct: 6   NRQHVSLALALFVLYLAIVFWPHFAKWCTTIFAAMTPLLIGAVIAYIVNLLLRKYEQLYR 65

Query: 53  ------SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
                   K+    +   ++ +S+  +  + +  +    +  ++ L++         I  
Sbjct: 66  RLFKGPRAKKFQRLWGIFLSYLSIFLILAIVIRLVIPELISCVQLLINNHSKVITRFITA 125

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
               S++       ++     S  + +     +      +       S      + +  S
Sbjct: 126 FEHNSNLQEVFKQFDVRHLSWSKAEKVLSYGFSGTVKALMSTASSVVSVATTSIVAFFFS 185

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           I  +I       +    I   L  +   L       + R       +   G    A   G
Sbjct: 186 IYLLIYKEMLARQCTRLIDAYLGKIKRPLM-----YVIRTFDNCYSNYIAGQCKDAAILG 240

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           +       +  +P    +GV+TAI A+IP    I   ++ + L+   +   A    ++  
Sbjct: 241 IACFIGMSILRMPYATMIGVVTAIGALIPIIGAILGASIGVVLIFAVSPLKAGIFLIFII 300

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   + ++   P +VG  I LP +  F  ++ G    G+LG+ +   L A +  I    +
Sbjct: 301 VLQQLDNRITYPLVVGKSIGLPSVWVFAAVIIGGSISGILGMMLTVPLFAALYQIIATDV 360

Query: 347 MAIKENKEK 355
              +   ++
Sbjct: 361 GKRERPGQE 369


>gi|228999177|ref|ZP_04158759.1| hypothetical protein bmyco0003_37340 [Bacillus mycoides Rock3-17]
 gi|228760794|gb|EEM09758.1| hypothetical protein bmyco0003_37340 [Bacillus mycoides Rock3-17]
          Length = 358

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P L A  I +   P+      K+    T   ++  +         +    
Sbjct: 41  IIFVFKVAITPFLIACFIAYLLHPLIEKLY-KEGMPRTLAILLIYILFFGGLGYGIYKGT 99

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        +++           T +       K+       
Sbjct: 100 PVVIAQLQEINKQFPQFMKMYDSWMDGVTE----------QTDNFPSFIHEKVKQIFVGI 149

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D               + +  + 
Sbjct: 150 EMKIQALLNKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHVFWKFVPSKWRSTGQV 209

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI  
Sbjct: 210 LAKEIDKSLGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIVGVTDIIPYFGPILG 269

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 270 AIPTLMIAATVSTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEI 329

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 330 GGIVGLLIAVPILAVIRTVI 349


>gi|32474562|ref|NP_867556.1| permease [Rhodopirellula baltica SH 1]
 gi|32445101|emb|CAD75103.1| probable permease [Rhodopirellula baltica SH 1]
          Length = 664

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/270 (19%), Positives = 114/270 (42%), Gaps = 4/270 (1%)

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++++ +       A +    V  W++ + GG   S+L        +    L     +
Sbjct: 383 PQLLVQLNKNERFEQPAVKTAAAVRSWMNQLLGGSLRSQLSLIANPDEKDFSSLIRMARE 442

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +    F+ R  S  G I +     ++ ++++++FF  DG  + + L  L      AY  +
Sbjct: 443 SLQPRFV-RLTSATGSIVVQVIFGLVILVVSVYFFLIDGPVMIRTLMRLSPMD-DAYEHQ 500

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +     +  R+  L     A+ +G++    +WL G    V L  +T++MA++P     S 
Sbjct: 501 LLTEFDRTSRAVVLASVASAVVQGILATIGFWLCGFDQIVLLLFLTSVMALVPFLGAASV 560

Query: 263 TAVSIYLLIKGN--IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                  L   +     A  L ++GA  +  +D  ++ +++ G  +L  L     ++GGV
Sbjct: 561 WVPCALWLGLVDQRWIAAAFLAIYGAAVVSSIDNVIKVYVLHGRSQLHPLFALLSVIGGV 620

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              G +G+ +GP+++  +  + +     +K
Sbjct: 621 SVFGPIGILVGPMVVVFLQTLLEILNHELK 650



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 36/87 (41%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   I+ + ++    + GFF P+  A ++     P++     K        A   T  
Sbjct: 107 VMLVIGILAVGVLFYRLMIGFFVPLFLAALLVVIFRPVHLWIFEKVGRRRRLAAGTTTAL 166

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKV 96
           ++ + ++PL  L      +   L+SK+
Sbjct: 167 ILFIVLLPLGVLVSVATTQFTILLSKM 193


>gi|332175167|gb|AEE24421.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 353

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 107/358 (29%), Gaps = 19/358 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M    L  + +++ +   I+ +  + +             ++I        S    K   
Sbjct: 1   MNTRQLATRTLVQSITATIVFLIAWLVVTNGKILLTFFGGILIAVLFRESASWIGHKTGF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
            S FL  +  ++   L  +   +       + +EL+ ++  A+ +       L       
Sbjct: 61  KSKFLLPVTIIAPFVLLGLFFAYTAPQISAQGEELMERIPQADTYINEHLSGLPW----- 115

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                        Q  + L+      + +  +    S      L+   S IF +    F 
Sbjct: 116 -----------GTQLKENLTNLSSADSEVSTVVNAVSSVFSSTLNGFGSFIFALFLGLFL 164

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +     +   +L         +++     + +    +      +  G++     W  G
Sbjct: 165 AVNPDWYIKGAVTLVPPARRERIREVLGACGRALSGWLVAKIASMVLVGILTTLGLWALG 224

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
               + LGVI A+++ IP   PI     +  + +   +     + +       I    L 
Sbjct: 225 TDLALVLGVIAALLSFIPNIGPILGFIPAAMVSVITGLDTLLYVSILYVAVQMIESYVLT 284

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P L      LP   T F  V     +G+ G+ +   L     V   +  +     K  
Sbjct: 285 PMLQAELADLPPALTLFAQVALGAMVGMAGILLAAPLCVAAMVFINKLYVEDILEKPN 342


>gi|237736730|ref|ZP_04567211.1| permease [Fusobacterium mortiferum ATCC 9817]
 gi|229420592|gb|EEO35639.1| permease [Fusobacterium mortiferum ATCC 9817]
          Length = 362

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 104/325 (32%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+  PV+ A  I     PI +    K +       ++    V  L  + +  +    +  
Sbjct: 38  GYLVPVIYAFFITIFLEPIVTIIEKKLKIRRILAVLLTIFLVFVLVGIFIGIIAPQVIES 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K+L  K+             L +         +    +    +  I        +    
Sbjct: 98  IKDLYGKLPAMQGRLEIYAGELIEYLKRKGLLLMGDDEIKASITNFIKENMKYLQDFGIS 157

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +      +G+    + +      + L         I+     + E               
Sbjct: 158 VLWNIVWWGIALTKFFIGFFLAFLILIDKEYFVRFINNIFSIIFEREKAKSIMVFLGESR 217

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +V+     G  I++   G++     +L+G P  +  G++  +  MIP    I   A+++ 
Sbjct: 218 EVLLKFVWGRIIVSTAVGIITFLVMFLSGTPYALLSGIMIGVGNMIPYIGSIIAGAIAVL 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L+     F    L L   I   +    + P +V   + +        ++ G    G +G+
Sbjct: 278 LVGLAEPFKLIFLGLAILIAQTVDGWVIGPKIVSETVGMGTFWVVVAILIGGSLFGPVGM 337

Query: 329 FIGPVLMALIAVIWKESIMAIKENK 353
           F G     ++ +++ + +    ++ 
Sbjct: 338 FFGVPAFGILKLVYIKLLNKRGDSN 362


>gi|75762603|ref|ZP_00742452.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489912|gb|EAO53279.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 313

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 107/309 (34%), Gaps = 5/309 (1%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
            A ++ +   P  S    K   S         + V+ LF+  ++ +      ++  L+  
Sbjct: 1   MAGVLFYILHPFVSLLEKK-GVSRIVSIASIYLIVIGLFVFLVVTVIPIIKDQIDALIDN 59

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +              +   G         ++L+   +  +   T   T  +  +    + 
Sbjct: 60  LPYFGHE----IEQAARRFGESNLLGKIQENLNINVANMVKDYTVDFTKSLSSVTGNVTG 115

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           F     +  L+ + +   LF+  +DG  +                 +I   +   I S  
Sbjct: 116 FLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYI 175

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
            G  I+++  G++L   Y + G+   V L ++  I+ ++P   PI     ++ +    + 
Sbjct: 176 RGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSP 235

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                + +   +      K + P ++G  + +  +   F ++      G++G+ +     
Sbjct: 236 AMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGY 295

Query: 336 ALIAVIWKE 344
           A++ V+   
Sbjct: 296 AILKVLVTH 304


>gi|288957469|ref|YP_003447810.1| hypothetical protein AZL_006280 [Azospirillum sp. B510]
 gi|288909777|dbj|BAI71266.1| hypothetical protein AZL_006280 [Azospirillum sp. B510]
          Length = 342

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 117/332 (35%), Gaps = 10/332 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +  +L  LYF +    P++ ALI+ F   P+  +            AV+         
Sbjct: 6   LFVIAVLFMLYFGRDVLLPIMLALILSFLLRPLVRALYRVGVPEGIGAAVLVITLF---- 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +L   Y       E V+++             +         +    + ++     +
Sbjct: 62  -GGVLLAVYTLSAPAAEWVNRMPRVLHELEFKLGDIRAGIERAREASRQIEQITQETGNE 120

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +   G   + +  S+   +  +  +     ++  FF  R   S+   + ++ + 
Sbjct: 121 TGPAREVVVRGPSLMEQAVSQVESVLANVVI---LQVLLYFFLARGRHSLEALIGTMRDV 177

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               ++  ++  + + I +  L +T+I    GL  G   WL G+P+    GV+ A+   I
Sbjct: 178 DDRVHYAMVAATLQQNIAAYLLTITLINAMLGLATGLVMWLWGLPNPALWGVLVALANYI 237

Query: 255 PGGAP--ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P   P  ++     + ++    I       L       I    L P +VG  + L  +  
Sbjct: 238 PFIGPAVMTGVLFLVSVMTFEGIGTILLPPLSFVALTTIEGNFLTPMIVGRRLALNPIAV 297

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F  ++      G+ G  +   ++A++ +++  
Sbjct: 298 FVSILFWGWLWGIPGALLAVPILAILKILFDA 329


>gi|226311488|ref|YP_002771382.1| hypothetical protein BBR47_19010 [Brevibacillus brevis NBRC 100599]
 gi|226094436|dbj|BAH42878.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 354

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 105/332 (31%), Gaps = 13/332 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + W++  ++      +K    PV+  L+I +   PI      ++        ++   S +
Sbjct: 25  LLWLLRPVLSQLFSLIKEVLVPVILGLVIAYLLHPIVQLLEKRRV-PRLMAVLLIYGSFV 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + ++        ++ EL   +                        E     L    
Sbjct: 84  LVITIAIINAIPVFTKQLVELSDDIPRLMDWYYTWMSEW----------EARKYFLPDSI 133

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S  +         G+              +    +   +    F+F +D   + +   S+
Sbjct: 134 SKGVDRVIIQSNEGMSHSVSKIVDNAKHSMGKLFAFAIVPFIAFYFLKDMKQLHETGMSI 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      + R + + +     G  ++A+  G+     YW  G+P    L     + 
Sbjct: 194 VPKAYRKQVLIVLRDINESLGKYIHGQMMVALIVGVFAYLGYWWIGMPYPFVLAAFVCLT 253

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +IP   P I      +  +   +      + +   I   +    L P +VG  + L  L
Sbjct: 254 NIIPYIGPLIGAAPAVVIAITI-STKTLLLVVVVNLIIQIVEGNILSPNIVGRSLHLHPL 312

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                L+ G    G++GL +   ++A+  VI 
Sbjct: 313 LIILALLVGETVGGIIGLIVAVPILAVCKVIV 344


>gi|161524877|ref|YP_001579889.1| hypothetical protein Bmul_1704 [Burkholderia multivorans ATCC
           17616]
 gi|189350373|ref|YP_001946001.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|160342306|gb|ABX15392.1| protein of unknown function UPF0118 [Burkholderia multivorans ATCC
           17616]
 gi|189334395|dbj|BAG43465.1| putative permease [Burkholderia multivorans ATCC 17616]
          Length = 650

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 82/305 (26%), Gaps = 19/305 (6%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----------- 112
           +++ +  + L +  L    +    ++ EL S +             +             
Sbjct: 89  LVSVLVAVWLALSVLTAFGFLIGAQLAELASDLPRYQVAIERRVDNIQQTVVVHADAVLT 148

Query: 113 -----IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +       E  T                          + A  F    +    +I
Sbjct: 149 RTIDALKRVAPVREEHTSDSKPAGPADKAPLPVEVHEPSPSPLQLAQGFLSPVVSPLATI 208

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +I+   F       + ++L  L                 + +   FL    + +  G 
Sbjct: 209 GIVIVTAIFILLQRADLRERLIRLAGSHDMHRTTTAMSDAARRLSRYFLAQLCVNVCVGA 268

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           VL     + G+P  +  GVI  +M  +P          +  L    +   +  + +    
Sbjct: 269 VLSLGLAVIGLPGALLFGVIAGLMRFVPYVGVWIAALPATILAAAMSPGWSMIVAILVLF 328

Query: 288 ELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +      + L P + G    L  +      +      G +GL +   L  L  VI    
Sbjct: 329 SVTEVAAGQFLEPLVYGHSTGLSPIAVIVAAIFWSWLWGAVGLVLSTPL-TLCLVILGRY 387

Query: 346 IMAIK 350
           +  ++
Sbjct: 388 VSGLE 392


>gi|186683313|ref|YP_001866509.1| hypothetical protein Npun_R3077 [Nostoc punctiforme PCC 73102]
 gi|186465765|gb|ACC81566.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 365

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/339 (10%), Positives = 102/339 (30%), Gaps = 11/339 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ ++ + I L  L+ ++     V +A+++      + S F  +         VI+ + 
Sbjct: 5   QLIGFLALVISLYILWQIRQILLVVFAAVVLATALNQLVSFFQ-RFRIKRGIAVVISIIL 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ + +     +    + ++++  + + +A +       WL ++        +       
Sbjct: 64  LLTVLVGFFALIVPRLVDQLQQFGNIMPMALERLRSWNNWLQNVIPDQLLENIR------ 117

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +   T    + ++ +           L   L ++  I        +         
Sbjct: 118 ----GLRYLTQGLQDWLNRLINNFFSLVSSSLSIILGLLLFIALTIMLLANPLPYRHGFI 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +      I       +     G  +  +           + GVP  +   ++  
Sbjct: 174 LLFPAFYRQRVDDILNKCATSLTGWIKGTLLTMLVIASFSYVGLLILGVPLPLVNAILAG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  IP   P         L +    +    +         +    + P ++     L  
Sbjct: 234 LLEFIPNVGPTLSVIPPALLALSEEPWKIAAVVALYFGIQQVESLIIVPLVMKSQASLLP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             T   +V      G LG+F+   L+ +     KE ++ 
Sbjct: 294 AVTLVAVVFFGSFFGFLGVFLAVPLVIVFQTWIKEVLVE 332


>gi|317124038|ref|YP_004098150.1| hypothetical protein Intca_0896 [Intrasporangium calvum DSM 43043]
 gi|315588126|gb|ADU47423.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 379

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 104/334 (31%), Gaps = 17/334 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +++  + L        P+L AL++     PI               A    +
Sbjct: 32  RLLVIGVALYVASMLLREFSQIVVPLLIALLLAAMLVPISRRLARAMPV--GLAAGTTVL 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +       +       + EL ++V    +      R    I    +          
Sbjct: 90  GVILIVSALFTLIGQQFSSGLSELTAEVATGLEQIRDWLRTTFSITDSEFDRYFENLREG 149

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                          +    + + A+  G+    +   +   + ALFFF  DG  I   +
Sbjct: 150 V--------------SNSGNLGQTAADVGLTATHFIAGMFIALFALFFFLYDGPRIWAWI 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   +         RI    + +      I+A+ + + +     +  VP   A+GV+ 
Sbjct: 196 VRLFPRVSRPRVDSSGRIAWDQLSAFVRATIIVALVDAVGIALGATVLKVPFAFAIGVLV 255

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    +       I  L+      A  +         +    L+P L+G  + +
Sbjct: 256 FLFAFIPIVGALLSGAVAVILALVSHGFGVALIMLAVVIAVQQLESHVLQPVLLGHAVSI 315

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L     +  G    G++G        A++  +
Sbjct: 316 HPLAVILAIAAGSTVAGIVGALAAVPFAAVLNAV 349


>gi|306831279|ref|ZP_07464439.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426515|gb|EFM29627.1| conserved hypothetical protein [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 372

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 109/331 (32%), Gaps = 12/331 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISK----------KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           P L    I +    + S +              +       ++A ++ + L       + 
Sbjct: 41  PFLIGAGIAYIVNIVMSLYEMLYTRVIKNRVLLKAKRAISMILAYLTFILLISWLFSIVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+        + I        I   +      +   S            + 
Sbjct: 101 PDLISSINSLLKIDTTGIANFIKEVSDNKAIKELLDYFGNSSDITSTLSDYSQQILNQVL 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +     +    S      L+  +S++F I  L    + G   +  +D+     +      
Sbjct: 161 SVLTGVLTS-VSTIASTVLNVFVSLVFSIYVLASKEQLGRQFNLLIDTYLG-KYAEKVHY 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +  I+ +     F+G T+ A+  G +  +  +L   P    +G++ A  A+IP       
Sbjct: 219 VLDILHQRFHGFFVGQTLEAMILGSLTAAGMFLFSFPYAATIGILVAFTALIPVIGAYIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L+   ++  A    ++  +        + P +VGG I LP +     +  G   
Sbjct: 279 ATIGFILIATQSVSQAFLFLVYLIVLQQFEGNVIYPRVVGGSIGLPGMWVLMAITIGGAL 338

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+LG+ +   L A +  I K+++   ++  
Sbjct: 339 WGILGMLVAVPLAASLYQIIKDNVAKRQQAN 369


>gi|119476473|ref|ZP_01616824.1| membrane protein, PerM family [marine gamma proteobacterium
           HTCC2143]
 gi|119450337|gb|EAW31572.1| membrane protein, PerM family [marine gamma proteobacterium
           HTCC2143]
          Length = 357

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 107/334 (32%), Gaps = 12/334 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
            LV L  +     PV++++I+ F    + +    ++         +A    +  F V LL
Sbjct: 28  ALVVLMTMGNVLGPVITSIILAFMMQGVITQLTKRRV-PRWLAISVAFSIFVGTFFVALL 86

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +      +M  L +++         +   L +      +       +   ++       
Sbjct: 87  VVLPLAWNQMTNLFNELPGMLSKWQQLMLVLPEQYPSFISETQIQDWILLAKAEL----- 141

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                    +  F+       +   + ++ + I +FFF +D   I     S   H     
Sbjct: 142 ---GQVGQVVVSFSISSIPNLIGLLIYLVLVPILVFFFLKDHLLIVAWFKSFLPHE-RPM 197

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             KI   + + + +   G  I  +  G++   A+ + G+     LG++  +  +IP    
Sbjct: 198 LTKIWHEMDEQVANYVRGKAIEIVIVGVISYIAFVILGLNYAALLGLLVGLSVVIPYIGA 257

Query: 260 ISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              T     +     G   +   L    A+   +    L P L    + L        ++
Sbjct: 258 AVVTVPIALIAYFQWGWGSDFLTLLGVYAVIQGLDGNVLVPLLFSEAVNLHPTAIILAVL 317

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                 GL G+F    L  LI  +      +  +
Sbjct: 318 VFGGFWGLWGVFFAIPLATLIKAVLNAWPSSRHD 351


>gi|163788240|ref|ZP_02182686.1| hypothetical protein FBALC1_07663 [Flavobacteriales bacterium
           ALC-1]
 gi|159876560|gb|EDP70618.1| hypothetical protein FBALC1_07663 [Flavobacteriales bacterium
           ALC-1]
          Length = 362

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/351 (13%), Positives = 121/351 (34%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + + L  LY ++     +  A +I     PI      K + ++T   V+  V
Sbjct: 12  RALGILLAVALALFFLYKIQSVIVYIAVAAVISLIGRPIVIFLRRKLKFNNTVAVVVTMV 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L +  +       + +   L           + + +  S++         + +   
Sbjct: 72  LLIGLLVGLVGLFIPLIVEQGHNL---------SLLNIEQLQSNVENLYDQIVTYFEFQK 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I     L       IP F + F      + + +  ++   FFF +D       +
Sbjct: 123 IDVEQSIKDSNLLSKLDFAVIPNFLNSFISGLGSFSIGLFSVLFISFFFLKDSKLFEDGI 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +          K+    +  ++   F+G+    +   ++      + G+ + + +  + 
Sbjct: 183 MTFIPKGNEMRSKRSFTKIKDLLSRYFVGLIFQILILFVIYTIVLLIFGIDNAIVIAFLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNAT---------CLFLWGAIELFIVDKTLRPF 299
           A++ ++P   P+    + + L +  N+  +           + +   I   + +   +P+
Sbjct: 243 ALLNLVPYVGPLVSGFLMLLLSMSSNLGESFSDVILPKTTYIMIGFVIAQLVDNFFSQPY 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F  ++      G++G+ +       I VI KE +   K
Sbjct: 303 IFSKSVKSHPLEIFLVIIIAGILFGIIGMIVAIPAYTAIKVILKEFLSEYK 353


>gi|125973937|ref|YP_001037847.1| hypothetical protein Cthe_1423 [Clostridium thermocellum ATCC
           27405]
 gi|125714162|gb|ABN52654.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
          Length = 368

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/366 (10%), Positives = 116/366 (31%), Gaps = 12/366 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-----SLYFLKGFFAPVLSALIIGFTSWPI---YSSFI 52
           M   ++        +++ +I       +++     F P    + + F           F+
Sbjct: 1   MTRNLIIVITYAVALVLIVINFVPIMRAVWKFIVLFKPFFMGIAVAFVLNRPCMAVERFL 60

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
           +K+   +    ++  +++   ++V LL +       + EL+  + +   +         D
Sbjct: 61  NKRLFKNRLKVLVRGIAITVTYLVVLLLITLIISFIIPELIKSIQVFLSNMGAYIDNFRD 120

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +   +       +         IL  T    + +  +           L +  +++  ++
Sbjct: 121 LTNELSELLGLERIDLSSLDKLILEYTNRLGSSLTELMPKIISITTGVLSFFATLVITVV 180

Query: 173 ALFFFYRDGFSISQQLDSLG----EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
              +       +  Q   +               + R+V  V      G    A   G +
Sbjct: 181 FSIYILAGKERLIGQCKKVFSTYLPECLYKKGAYVYRVVVDVFNKYIYGQLAEAFILGSL 240

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 +      + + V+ A+ A++P          +  LL+  +   A    ++  + 
Sbjct: 241 CFIGMVIFRFEYALLISVLIAVTALVPYFGAYIGGFCAFMLLLMISPTKAIWFLVYLVVL 300

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + +  + P +VG  + LP +      + G    G +G+  G  +  ++  + +  ++ 
Sbjct: 301 QQLENNLIYPRVVGSSLGLPGIWVVLAAIVGAGVGGPIGVLTGVPIATVLFTLLRNDVLR 360

Query: 349 IKENKE 354
               + 
Sbjct: 361 RSGKQN 366


>gi|325264760|ref|ZP_08131489.1| sporulation integral membrane protein YtvI [Clostridium sp. D5]
 gi|324030052|gb|EGB91338.1| sporulation integral membrane protein YtvI [Clostridium sp. D5]
          Length = 372

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/345 (15%), Positives = 109/345 (31%), Gaps = 6/345 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK----GFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M       Q  +  +       +  F+     GFF P +   II   + P+ +    + +
Sbjct: 1   MENRRPYWQVAVSLIFSIAATAAFVFIGIKSIGFFMPFVIGWIISAIATPVVNWLEKRLK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                 + +  + V+ L ++ L F       E+ +LV              R +     G
Sbjct: 61  IVKKLGSALIVIVVLALIVLLLYFAISKVSAEIGDLVKNFPELYAQLEEGLREIGSTLSG 120

Query: 117 MW--ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
           ++    E      +   +        L T         A  F      Y ++ I  +++ 
Sbjct: 121 VFSKLPEGIQNGWNAVVANLDQYMGELVTKLSQPTVTAAGNFAKSLPSYLIAFIVAMMSA 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +FF      + Q L  +           +   +   +   F     I     L+L +   
Sbjct: 181 YFFTVQREEVIQWLKKVSPPSVEKRMSLVMDNLKYAVGGYFKAQFKIMGIVFLILFAGLA 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           + GV   + +  + A +  +P     +         +    +  T   L       +V +
Sbjct: 241 MFGVHYAILIAFLIAFLDFLPFFGTGTAMIPWALYKLLTGDYKMTAALLVIYAITQLVRQ 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L+P LVG  + L  L T   L  G +   +LGL +   +  ++ 
Sbjct: 301 LLQPKLVGDSMGLNPLVTLLLLYIGYKVSSVLGLILAVPIGMVLI 345


>gi|315498797|ref|YP_004087601.1| hypothetical protein Astex_1784 [Asticcacaulis excentricus CB 48]
 gi|315416809|gb|ADU13450.1| protein of unknown function UPF0118 [Asticcacaulis excentricus CB
           48]
          Length = 352

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 103/340 (30%), Gaps = 20/340 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +   M++ + L++   + G +  V  A+++           +   +    +  ++A
Sbjct: 13  VQKTLFLLMVVGLSLLAFKLI-GIWLLVFGAVVVATVLRATAEPLVKYLKLRDNWAVLLA 71

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++              + +   L  ++  A        R                  
Sbjct: 72  LLFLVSFLSASGWLFGSEIVRQTNNLSRELPEAWAQLQERLR------------------ 113

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +      +L +          +     +          +++ +++A  F      S   
Sbjct: 114 -ASEAGATVLDQINNLGQQASGVLSLVPKIAGEIASSIANLVVVVVAGIFMAMHPRSYRD 172

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  L         +    +  K +R   LG     +  G +      +AGVPS  ALG+
Sbjct: 173 GVVRLFPKSQKDRVRDGLNLSGKALRLWLLGQLFSMVLVGSLTAIGLSIAGVPSAGALGL 232

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           ++ +   +P   P+      + L    N+       +       +    + P +      
Sbjct: 233 MSGLAQFVPIVGPVVSAGPGLLLAASENMTTFIAALVIYVGVSQLESNIITPMVQKHVAA 292

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +P + T F ++G    +G LG+     L  +   +  +  
Sbjct: 293 VPTVITLFAVLGFGSLLGPLGVLFATPLTVVAHTLVMKFY 332


>gi|310828588|ref|YP_003960945.1| sporulation integral membrane protein YtvI [Eubacterium limosum
           KIST612]
 gi|308740322|gb|ADO37982.1| sporulation integral membrane protein YtvI [Eubacterium limosum
           KIST612]
          Length = 363

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/331 (11%), Positives = 99/331 (29%), Gaps = 3/331 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   ++  +    L +     AP +    + +           K   +    A++  +  
Sbjct: 14  MYFAILALLCFAVLKYAMPLLAPFIIGFALAYLLKGPIRLLSGKLRLNGKISAIVVVLVF 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                  +  L        +EL+  +       +                 +    ++  
Sbjct: 74  YGTIGTLISLLGVKAFAASRELIFNLPQIYALHVEPVLMGIFDGVEQSVLRMDPALVAAL 133

Query: 131 QSLKILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           + +       L               S          + ++ +II+ FF   D   ++  
Sbjct: 134 EEMFNRLVQSLGQMVSSLSMGAMGTVSDIASSLPGLFIKLLLLIISTFFIAIDYDRLTGF 193

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +           + +I   V   +        +I     + L     L GV + + +  +
Sbjct: 194 VMHQLNGKTRTVFVQIKEYVVGTLFVCIRSYALIMSITFVELVIGLTLIGVDNALIIAFV 253

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            A+  ++P             +      +      L   + + +V   + P +VG  I L
Sbjct: 254 IAVFDILPVLGTGGIMIPWTVITALQGNYPLALGLLLVYLVITVVRNIIEPKIVGSQIGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + T   +  G++  G++GLF  P++++L+
Sbjct: 314 HPVITLASMFVGLQLFGVVGLFGFPIVLSLL 344


>gi|308050578|ref|YP_003914144.1| hypothetical protein Fbal_2868 [Ferrimonas balearica DSM 9799]
 gi|307632768|gb|ADN77070.1| protein of unknown function UPF0118 [Ferrimonas balearica DSM 9799]
          Length = 369

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 131/347 (37%), Gaps = 5/347 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ +++     ++ FF PVL   I+    +P++  F  +  +     A + T+  
Sbjct: 19  IKFGLILVLLIWCFQIIRPFFMPVLWGAILAVALYPLHLGFSRRLGDKPKLSATLITLIA 78

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++P  F+    +    ++  ++        P  + +   P     +    +  SH 
Sbjct: 79  LAILLLPTFFVASAMISGASDVAQQLETEAFEVPPPTQKVQQWPVIGERAYEIWQQASHN 138

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + +        +  + +           +  SI+   +    F   G +  + +  
Sbjct: 139 LERFLTTHAESIKQYLTSVLQTFGGVLSTVALFTFSILISGV----FLATGPACGKGIQL 194

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           + + L       +  +  + +RS   G+  +A  + +  G    L GVP      ++  I
Sbjct: 195 MADRLTGHAGSPLPVLAARTVRSVAQGVLGVAFIQAMAAGVGMALMGVPFTGLWTLLILI 254

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +A+      +    V  Y+    +   A    +W  +     D  L+P L+G  + +P L
Sbjct: 255 LAIAQLPPILVLAPVIAYVFSVSSGLPAILFTVWSILV-SASDGLLKPLLLGKGLNIPTL 313

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               G +GG+   G++GLF+G V++A+   + +  +       + + 
Sbjct: 314 VILLGAIGGMMMSGIIGLFVGAVVLAVGYTLLEAWLTGEGLQAQSVE 360


>gi|288905208|ref|YP_003430430.1| membrane protein [Streptococcus gallolyticus UCN34]
 gi|325978183|ref|YP_004287899.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
 gi|288731934|emb|CBI13499.1| Putative conserved membrane protein [Streptococcus gallolyticus
           UCN34]
 gi|325178111|emb|CBZ48155.1| membrane protein [Streptococcus gallolyticus subsp. gallolyticus
           ATCC BAA-2069]
          Length = 372

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 108/331 (32%), Gaps = 12/331 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISK----------KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           P L    I +    + S +              +       ++A ++ + L       + 
Sbjct: 41  PFLIGAGIAYIVNIVMSLYEMLYTRVIKNRVLLKAKRAISMILAYLTFILLISWLFSIVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+        + I        I          +   S            + 
Sbjct: 101 PDLISSINSLLKIDTTGIANFIKEVSDNKAIKELFDYFGNSSDITSTLSDYSQQILNQVL 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +     +    S      L+  +S++F I  L    + G   +  +D+     +      
Sbjct: 161 SVLTGVLTS-VSTIASTVLNVFVSLVFSIYVLASKEQLGRQFNLLIDTYLG-KYAEKVHY 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +  I+ +     F+G T+ A+  G +  +  +L   P    +G++ A  A+IP       
Sbjct: 219 VLDILHQRFHGFFVGQTLEAMILGSLTAAGMFLFSFPYAATIGILVAFTALIPVIGAYIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L+   ++  A    ++  +        + P +VGG I LP +     +  G   
Sbjct: 279 ATIGFILIATQSVSQAFLFLIYLIVLQQFEGNVIYPRVVGGSIGLPGMWVLMAITIGGAL 338

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+LG+ +   L A +  I K+++   ++  
Sbjct: 339 WGILGMLVAVPLAASLYQIIKDNVAKRQQAN 369


>gi|153938584|ref|YP_001391862.1| hypothetical protein CLI_2628 [Clostridium botulinum F str.
           Langeland]
 gi|152934480|gb|ABS39978.1| putative membrane protein [Clostridium botulinum F str. Langeland]
 gi|295319886|gb|ADG00264.1| putative membrane protein [Clostridium botulinum F str. 230613]
          Length = 342

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 113/319 (35%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +  L + +I +   PI++    K   +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFLISFVIYYVLKPIHTFLKQK-GINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    ++   +   ++ +        +  K     ++  +     +    
Sbjct: 90  IKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKF 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +               +  L    + I +++F   G  I Q+   +         K +  
Sbjct: 150 VGL------------GENILDYAVIPIIVYYFLAAGDKIIQKFFMIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLVGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
           +G+ +   +  ++ +I+++
Sbjct: 318 VGMVLAIPIGVIMKIIYED 336


>gi|225870497|ref|YP_002746444.1| membrane protein [Streptococcus equi subsp. equi 4047]
 gi|225699901|emb|CAW93811.1| putative membrane protein [Streptococcus equi subsp. equi 4047]
          Length = 384

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 110/338 (32%), Gaps = 13/338 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P L    + +    + S++               +       ++A  + + L +  +  
Sbjct: 49  LPFLYGAAVAYIVNIVMSAYERAYTYTLKPFPFAMKARRGLCMLLAYFTFISLIVWIISI 108

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L      A +  I        I   +       K      +        
Sbjct: 109 VIPDLIASISSLTQFDTRAIKEVISDLGHNKLIARAINYIGGDAKLTETITNYSQQLLKQ 168

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 169 FIGVLTG-ILTSVTAVASAIINVVISFVFSLYVLASKEELCQQATTLIDTYTG-KYAKAI 226

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++    R  F+  T+ A+  G +     ++  +P    +GV+ A  A+IP     
Sbjct: 227 HYLVGLLHSRFRGFFVSQTLEAMILGSLTAIGMFILQLPFAGTIGVLVAFTALIPVVGAS 286

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 287 IGAAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIYPRVVGGSIGLPAMWVLMAITIGA 346

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++G+ +   L A +  + K+ I   +  + + SS
Sbjct: 347 ALKGIVGMIVAVPLAATLYQVVKDHIHKKQALQNRQSS 384


>gi|330994841|ref|ZP_08318763.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
 gi|329758102|gb|EGG74624.1| UPF0118 inner membrane protein ydiK [Gluconacetobacter sp. SXCC-1]
          Length = 331

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 68/334 (20%), Positives = 142/334 (42%), Gaps = 4/334 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L S +  + F        I+  T++P+Y   + +    +   A +   ++  L  VP+
Sbjct: 2   VLLFSAWIEQSFLFAFAWGGILSITTYPLYRRLVQR-GMGNGLAAGLIAAAIFALLAVPM 60

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +     +E+  L++    A   GIP+   ++ IP          +H            
Sbjct: 61  IAMAVRAGMELPSLMAWGRGALHDGIPLSPQVAAIPHIGPRLAGLWRHYLSDPEELRHWT 120

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                       R      M   +  +      ++++F+     ++   + ++G     A
Sbjct: 121 AVASRMFATGDGRELPHRVMDMTETFV---IATLSVYFYLAASRTLQADIRAVGSRFLGA 177

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             + + R     +R T  G+ ++ +G+G+++G  Y++AG P    L ++TA++++IP   
Sbjct: 178 RARDVIRNTVGAVRGTVAGLVLVGLGQGVLVGIGYFIAGTPHPALLTLLTAVVSIIPFCG 237

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+   A  +       +  A  + + GAI     D  +RP L+ G   +PFL     ++G
Sbjct: 238 PVLLCATMLMTFAANGVTQAVIVGVIGAIAYGAGDHFVRPRLISGSTSIPFLAVLTAILG 297

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G+   GLLGLFIGP ++A+   +W+ +    +  
Sbjct: 298 GLHMFGLLGLFIGPTVIAVALSLWRTAAAEEQAR 331


>gi|46579600|ref|YP_010408.1| hypothetical protein DVU1189 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602912|ref|YP_967312.1| hypothetical protein Dvul_1868 [Desulfovibrio vulgaris DP4]
 gi|46449015|gb|AAS95667.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563141|gb|ABM28885.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris DP4]
          Length = 399

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 128/327 (39%), Gaps = 4/327 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   ++ + +   + +P Y    S   E     A++    V+ L ++P++      +
Sbjct: 47  VAPFLHTIILSSVFSASIYPFYRRLTSYLGERPVPAALLVLAGVVILVVIPVVVFVIGLI 106

Query: 87  LEMKELVSKVVLANQH--GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +    VS +        G+      +  P   W  E           ++          
Sbjct: 107 PQAVASVSAITRWLAGHGGLDGLNDAALAPYIAWVRENLPFIDPAQLDVRSSLVQ-ASRA 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               + ++ +      L      + +++ +FF  +DG  + Q++  L          +I 
Sbjct: 166 AGQTLLQWGTYVLGNTLLLFGHFLLLLLCMFFMLKDGAWMVQRVRYLSPLRI-DQQDRII 224

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +V RS  +G  ++A+ +GL+ G A    G+P+     ++     +   G  + +  
Sbjct: 225 LELRRVGRSVLVGGLLVAVIQGLLGGVALAAVGIPALFWGTLMAFASLVPVVGTGLVWVP 284

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              YLL+     +A  L LW  I +   D  LRP+ + G + +P    F  ++GGV+  G
Sbjct: 285 AVCYLLLTSQWESALFLSLWCGIVVVGADSILRPYFMRGGVGMPVFFIFLSILGGVKAFG 344

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           +LG+  GP++++   V+        ++
Sbjct: 345 MLGILDGPLILSFTVVMLSLYGDEYRD 371


>gi|51245086|ref|YP_064970.1| hypothetical protein DP1234 [Desulfotalea psychrophila LSv54]
 gi|50876123|emb|CAG35963.1| conserved hypothetical membrane protein [Desulfotalea psychrophila
           LSv54]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/341 (19%), Positives = 131/341 (38%), Gaps = 6/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +  +  ++  I  V L  ++ F   +  A ++     P +              +++
Sbjct: 5   TINKSSLLVLVFIISAVFLSMIQQFLMAIFMAGLLSALLSPSHKKLCILLGNRENLSSML 64

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ L ++PL  L    + +   +   +    Q  I  P  ++     +   +    
Sbjct: 65  IVAGIVLLILIPLAILITIVVAQAITVSQSIAPWIQKFIAEPTSMTYYLEKVPFYQE--- 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +   +   I     L      F+      F  + +++  S + M+   F+F   G  + 
Sbjct: 122 -ILPYRDTIIHKSGQLVGAISSFLIDSLGSFTKLTINFIFSSVIMLYVTFYFLNVGKDLL 180

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++             K+      V R+T  G  II I +G + G ++ +AG+      G
Sbjct: 181 DKILFFLPLQDREEQ-KLLVRFTSVTRATIKGTIIIGILQGGICGISFAIAGIQGPFFWG 239

Query: 246 VITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            + A+M++IP     I +    I + +  N F    L +   +    +D  LRP LVG  
Sbjct: 240 TVMAVMSVIPAVGTAIIWGPALIIIALMSNFFGVAVLAIGCGLIAGNIDNFLRPRLVGKD 299

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            ++  L   FG +GG+   GLLG+ IGP++ AL   +W+  
Sbjct: 300 TEMHDLFVLFGTLGGISMFGLLGIIIGPLIAALFLTLWQIY 340


>gi|299538203|ref|ZP_07051488.1| hypothetical protein BFZC1_19390 [Lysinibacillus fusiformis ZC1]
 gi|298726405|gb|EFI66995.1| hypothetical protein BFZC1_19390 [Lysinibacillus fusiformis ZC1]
          Length = 352

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/338 (16%), Positives = 111/338 (32%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                + I R +++  +L++ YF+     P++ A I  F   PI   F  K + S     
Sbjct: 3   KFNARKLIFRLIVIISLLLAAYFIIPVSMPLILAGISAFFLEPIVMFFKRKWKMSRKIAV 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               +  + +  +         M ++  L  +          +   + +           
Sbjct: 63  AFIYIVSVIVISIICYLSITQIMTQIILLSKQAPYYISKLSDMWLHMQENISKYTEDFPP 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               S  ++     +   ++    F     S F        +S++  +IALF F  D   
Sbjct: 123 EVSASLQKTTMDFIKKVEESFLSFFNYSKVSAFFSEIPSLFISLLVYMIALFLFMLDLPK 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + Q      +       K I   +             ++   G V      L      V 
Sbjct: 183 LKQITYKYLKPNTAKKIKIILNRLKDATFGYMKAHLFVSFIIGGVTLIGLLLIQPKYAVT 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + +I  ++ ++P    I   A      +     +        A  L I+ + + P L+G 
Sbjct: 243 MTIIIWLIDIVPFLGSIIILAPWGLYHLLMGNTSIAVKLFILAAILLIIRRVVEPKLMGD 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            I L  LPT   +  G++  G++GL +GP ++     +
Sbjct: 303 HIGLSTLPTLISMFIGLQLFGIIGLLVGPFVIIFFIAL 340


>gi|251778739|ref|ZP_04821659.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083054|gb|EES48944.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 396

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 115/356 (32%), Gaps = 17/356 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAV 64
           I+      +  +     P+L A++I +  +PI  S  +  + +                +
Sbjct: 36  ILGTTFDFIGGILSLIKPLLIAILITYILFPITKSIENFLKNNKLYKIKNKGTCRALSII 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            + ++++ + +  L  +++    ++ + +S   +       +            A     
Sbjct: 96  FSYLAIIGIILGLLCGIYFMIGGQLSKNISISNIVEYISTYLNTHSFSSSSISLALSKLN 155

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I+       N I       + F +       +    +I   +  +D    
Sbjct: 156 LPFLDAMEDHIVEVVNFIQNYITNNIGRMASFAVSIGSGLATFFIALIISIYLLKDHEYF 215

Query: 185 SQQLDSLGEHLFP-----AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               + L   +F           +   + +V      G  + A   G++   A  + G+ 
Sbjct: 216 INLWNKLYYLIFRNSKVGKKINYVFSTIHEVFGRFIRGQLLEAFFVGVLSAIALSIVGID 275

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               +G+I  +  +IP   PI  T ++  + L+ G         +   I   I +  L P
Sbjct: 276 YAFVIGIIVGLSNLIPYVGPIVGTILAAIMGLLSGTPIKIVYAIIAMIIVQQIDNNLLAP 335

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +VG  + L  + T   ++ G    GL G+ +   L A   V++        + + 
Sbjct: 336 KIVGNSVGLHAVFTMLAILIGGNIGGLFGMLLAVPLAASFKVLFNNWYTNYMKKEN 391


>gi|150015987|ref|YP_001308241.1| hypothetical protein Cbei_1103 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902452|gb|ABR33285.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 342

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 117/335 (34%), Gaps = 13/335 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ ++ + +  +    +      ++++ I+ +T  PI   F +K   S    +++  + 
Sbjct: 15  TLLCFICLILAYIFNKSINSIINIIVASFILAYTLTPIRDGFEAKFRISKKISSIVVILI 74

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +    ++ +      E+  + +     +     + +                     
Sbjct: 75  IIGIITACIIVIVPTLFNEISNISNIFDNVSNLLEGMLKK-------------NNLDDFS 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++                   A    M   D  +S+  + I +++F  DG  I  ++ 
Sbjct: 122 TTNVIYNEILEKGNVFWTNFSENAVENLMSIGDNAMSLAIIPIMVYYFLCDGNKIYSKML 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L         KKI   + +V+        +++   G +      L  V   + + ++ A
Sbjct: 182 LLLPTSKRGLTKKILSDIDRVLTRYITSQLMLSGLIGGLTLILLLLLKVKFPLWISILNA 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ +IP   PI     ++ + +  +   A  + +   I   +    L P + G   ++  
Sbjct: 242 ILNIIPYFGPIFGAVPAVIVALLDSPIKAFWVIVGMFIIQQLEGDILSPKITGDSTEMHP 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 L+ G +  G +G+ +   +  +I V++ +
Sbjct: 302 FVIIILLLIGDKFGGFVGMVLVVPIAVIIKVLYDD 336


>gi|119962935|ref|YP_946407.1| permease [Arthrobacter aurescens TC1]
 gi|119949794|gb|ABM08705.1| putative permease [Arthrobacter aurescens TC1]
          Length = 378

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 118/338 (34%), Gaps = 16/338 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            + +  L  ++    PVL ALI+     P  +    ++         +A + ++ +    
Sbjct: 43  VVAVFGLLQIRLLVIPVLIALILAAAIGPFVNML-RRRGWRGGLATGVAFLGLLIVLGGV 101

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  +      +  EL+S+                          L        + L    
Sbjct: 102 ITVIVMSVRSQWDELISQAAAGLDELESFL--------------LTGPFPIDREQLNQAR 147

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           E  ++      +   A     +  ++      +++ LFFF +DG  I +      +    
Sbjct: 148 EAVVEFAQSSQVRSGAVTGLSVVTEFLAGASLVVVILFFFLKDGAKIWEFFLRPFKGRRE 207

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           A  +++ +   +V+     G  I+A+ + + +G+A  +  VP  + L +I  I A IP  
Sbjct: 208 AKLRRVGKRTMEVLGGYVRGTAIVALVDTVAIGAALLIMQVPLAIPLAIIVFIGAFIPLV 267

Query: 258 AP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              ++    ++  L+      A  + +       +    L+P ++G  ++L  L     L
Sbjct: 268 GATVAGILAALVALVANGPIVALIVIIVVIAVNQLEGDLLQPVVMGKSLELHALVILMAL 327

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             G    G++G  +   + A+   I +       + + 
Sbjct: 328 TAGTILAGIIGAVLAVPIAAVTWAIIQVWTAEDPDLEP 365


>gi|167626484|ref|YP_001676984.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|241668920|ref|ZP_04756498.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254877452|ref|ZP_05250162.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|167596485|gb|ABZ86483.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
 gi|254843473|gb|EET21887.1| PerM family protein [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 368

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 111/341 (32%), Gaps = 6/341 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    N + I+ + +M    + L FL  + AP+L+AL+I +    + +      +     
Sbjct: 11  RNRYQNNEPIVFFGLMLFFYLVLTFLGNYIAPILAALVIAYLLDTLVNILQKFTKIKRII 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           L  I  +  + L +  +  L    + ++ + + +              LS     +    
Sbjct: 71  LVYIVYMLFLILLLSLIFVLLPIIVNQLIDFIKQASHTLSSLKESLEQLSVKYPTILTEA 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++   S+       + +N   FI +  +    +     + +  + + +F+F +D 
Sbjct: 131 RINSIVTWFDSI---DWQKISSNIGSFILQNTATTIPVLFSILIYLFLVPLMVFYFLKDK 187

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +     S       A +  +   +   +     G  I  I   +V    +    +   
Sbjct: 188 ARMINWFKSFLPEQNGALYF-VWNDLKPKLADYVRGKAIELIIVSIVTYMGFAYFNLNYA 246

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V   +  +IP    +  T   + +  L  G       + +   I   +    L P 
Sbjct: 247 LLLAVGVGLSVIIPYVGMVIITIPVVMVGILQFGLNGTFVSMLIVFFIIQALDGNLLVPL 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L    + +  +     ++      GL G+F    L  L   
Sbjct: 307 LFSEVLNIHPVGVVSSILIFGGIWGLWGIFFAIPLALLFIS 347


>gi|314984415|gb|EFT28507.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
          Length = 404

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 104/332 (31%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 63  VLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATTAGTA 121

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    ++ + +     + +L S +    +    +  W + +                
Sbjct: 122 VIVVLAAGVVGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQDVIA-------- 173

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +            II ++  + F   D   +  +L 
Sbjct: 174 ---------DKLKKIDPQQVMSVVTSVASHTTSVVTMIIVILTGMIFMVMDTPQMHDRLR 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 225 MA--GSRKPDVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 282

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  ++  F++   ++P   G  + L 
Sbjct: 283 LTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQSIIQPKFAGDAVGLT 342

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 343 PTMSFVSLLLWGWVFGALGTLIALPCSLLVKA 374


>gi|78223970|ref|YP_385717.1| hypothetical protein Gmet_2774 [Geobacter metallireducens GS-15]
 gi|78195225|gb|ABB32992.1| protein of unknown function UPF0118 [Geobacter metallireducens
           GS-15]
          Length = 348

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 106/336 (31%), Gaps = 11/336 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +GIM ++    ++ + Y +    +  L + ++ +   P       +     ++  V   
Sbjct: 9   QRGIMWFLAAAAVIAAGYAVSHTLSCFLLSFVLAYLLDPAVVLLERR-GLRRSWGIVALY 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  L +  + F+  +  +  +  +  +    Q G  +            A + W    
Sbjct: 68  LVLTVLSLFFVAFIVPFASIRWEAFLKGLPAYLQKGKAIVLSWKMQALPAGADDEWRWLF 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                        L     +    F             +++   I +FF       I   
Sbjct: 128 ETATGQIDKMAARLGAGVYEAATGFVFN--------LFNLVLAPILIFFMLWYKNEIKTG 179

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +            + R +   +     G  I++    ++   A ++ G+      G+ 
Sbjct: 180 IITWLPRSRREAVLTLGREINASVGGYIRGQLIVSAIVAILSIIALFILGIDYPFLNGIF 239

Query: 248 TAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             + +++P    I  T   ++       + F    +    A+  F+    ++P +    +
Sbjct: 240 AGLASVLPFIGVILATLPPLFFAYVQYQSGFVLLKVIGAFAVIYFLEGYVVKPLVFKESM 299

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  L T   ++     MG  G+ +   + A + ++
Sbjct: 300 DLNPLVTIMVVMLFGELMGFWGILLAIPIAAAVRIV 335


>gi|254777409|ref|ZP_05218925.1| hypothetical protein MaviaA2_22461 [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 382

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/307 (10%), Positives = 85/307 (27%), Gaps = 13/307 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          +  +    +    L F+    +  +  L  +V  + +            
Sbjct: 67  RHGLPRGGAVALVLLGGFAILGGILAFVVLQFIDGLPGLTEQVTQSIESTRR-------- 118

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               W         S        +      N    +   A        +   + + ++  
Sbjct: 119 ----WLINGPAHLRSEQIDSAGNAAIEALHNNQAKLTSGALSTAATVTELVTAAVLVLFT 174

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L FF   G +I + +  +          +        +        ++A+ +   +G+  
Sbjct: 175 LIFFLYGGRNIWRYVVQIVPAHARERVHEAGSAGYGSLIGYVRATFLVALTDAAGVGAGL 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+P  + L  +  + A IP    +       +  L+   I  A            I 
Sbjct: 235 AIMGIPLALPLASLVFLGAFIPLVGAVVAGFLAVVVALLAKGIVYALITLGLLVAVNQIE 294

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L+P ++G  + +  L     +  G    G++G  +    +A +   ++  +      
Sbjct: 295 AHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFLNNAFQVLLAPNPSA 354

Query: 353 KEKISSN 359
           +      
Sbjct: 355 EAVKQEE 361


>gi|220906628|ref|YP_002481939.1| hypothetical protein Cyan7425_1198 [Cyanothece sp. PCC 7425]
 gi|219863239|gb|ACL43578.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 390

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 107/302 (35%), Gaps = 9/302 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +    FA ++ A ++ F      S    ++    +  ++I  +  + + +   + L    
Sbjct: 42  YFGALFAVLIVASLLAFLLNYPVSWIE-RQGGKRSQASIIVFLLAISILLGLGVTLVPMA 100

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             + ++L +++    + G      LS     M         L       +          
Sbjct: 101 FAQAQQLTARLPEWVESGRQQLLVLSHKADEMGLP----IDLDALGLQLLDRLKEQLQAV 156

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +   A       LD  ++++  I+  F+  + G  +   L           + +  R
Sbjct: 157 ARGVLNLAVDTVSSLLDVLINVVLTIVLTFYLLQHGDELWSSLIQWLPPKVQEPFSQTLR 216

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +     ++ F+G  I++      L S + L  VP  +  G+   +MA++P G  +     
Sbjct: 217 L---SFQNYFIGQLILSTCMAAGLISTFLLLKVPFGLLFGLTIGLMALVPFGGTV-GIIT 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              L+   +++    +     I   I++  + P ++G    L  +  F  ++ G +  GL
Sbjct: 273 ITLLVTLQDVWLGLRVLGASVIVQQILENLIAPRIIGSVTGLNPVWVFLSILAGAKIGGL 332

Query: 326 LG 327
           LG
Sbjct: 333 LG 334


>gi|160935120|ref|ZP_02082503.1| hypothetical protein CLOBOL_00015 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441851|gb|EDP19548.1| hypothetical protein CLOBOL_00015 [Clostridium bolteae ATCC
           BAA-613]
          Length = 365

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 105/331 (31%), Gaps = 1/331 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  +  + L  L     P ++A+ I     P  S      +      A +  +  
Sbjct: 24  IYFGIIGVLCYIGLKKLLPILIPFMAAMAIAAMLEPAVSLLDRHMKGGKGAAAAVVLLVF 83

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  +       +  ++E   K+       I                       +  
Sbjct: 84  YGSILTIMCVSGSQILSSIQEQAKKLPGIYSQTIEPGLSHFFSLLENSFPGHSIHISALG 143

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           QSL+   E          +   AS          L  +  +IA FF   +       L  
Sbjct: 144 QSLERFMENASVGISSGLLGWGASAI-SGIPALVLDFVIAVIASFFLTGNYRETLDFLLY 202

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      ++   + KV         ++ +     L   + + G+P+   L  IT++
Sbjct: 203 QIPDDRRQMLLQVLLHIRKVACRLLRAYALLMLLTFTELYIGFLVLGIPAGFTLACITSL 262

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++P     +       +       +     +   + + +V +TL P ++G  + L  +
Sbjct: 263 VDILPVLGTGTVLLPWALIAWTTGSGSLAMGLVCLYLLIAVVRQTLEPKIIGHQMGLSPI 322

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            T   +  G + +GL G+F+ P+   ++A +
Sbjct: 323 ATLLCIFAGGKLLGLTGIFLFPIAATVLAEL 353


>gi|319947927|ref|ZP_08022109.1| hypothetical protein ES5_01331 [Dietzia cinnamea P4]
 gi|319438416|gb|EFV93354.1| hypothetical protein ES5_01331 [Dietzia cinnamea P4]
          Length = 363

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 103/327 (31%), Gaps = 15/327 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++  ++  L    AP+  A+++     P+      +        A++  V V+ + +  L
Sbjct: 39  LVGQAVGRLSVIIAPLAIAVLLAAMLRPMVDRIPER--VPRAAAALVVVVGVLAVILAAL 96

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +       +  +  ++       +                +      +      +   
Sbjct: 97  AAVTTQLATGVPRMRDQISSGTDAALRWLE------------DGPLHLTADRLQEAVAQA 144

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +  + +   A +FG   +D    ++  +++LFFF   G  + +            
Sbjct: 145 RTWIESNSEAVAAGAVQFGHTAVDAVAGVLICLVSLFFFLYHGEKLWEFFVRWLPRASRE 204

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +     R     + +       +A      +G    L  VP  + + V+  + + +P   
Sbjct: 205 HVDTAFRGGWGSLGAYTRTQLTVAAINAAGVGLGALLLRVPFVIPIVVVVFLASFVPIVG 264

Query: 259 PIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            +      ++  L++     A  +     +   +    L+P L+G  + L  L     + 
Sbjct: 265 TLVAGVIPTVLALVERGPAIAVAMLAIVVVVHQVESHVLQPLLMGHAVALHPLAVILVVT 324

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
            G    G++G      + A+   + + 
Sbjct: 325 AGTYLFGVVGALFAVPVTAMANTVVRH 351


>gi|251779664|ref|ZP_04822584.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083979|gb|EES49869.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 382

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/325 (15%), Positives = 110/325 (33%), Gaps = 9/325 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCLFIVPLLFLFY 83
            F P +    I +    I   +  K       +       V   ++ M L  + + F+  
Sbjct: 46  IFQPFIIGFSIAYILNFILKFYEKKLNVYSKLKSKRGLGLVFTYITAMLLIGLFIQFVLP 105

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +  +  LV+ V             L      +  SE +   +++  +  I     + T
Sbjct: 106 QLIQSIIGLVNDVPKFINESTKFINKL---MLDLNISEEYLPLINNNFNEFINYIIKIAT 162

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N +  +  F ++      +  L +I  I  L    +      +   ++          +I
Sbjct: 163 NLLPVLGGFVTKIASSIWNIVLGVIISIYLLIDKEKFCAMSKKVTYAIFYKNAAEKIIEI 222

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +           +G  + +   G++      +  +P  + + VI  I  +IP   P    
Sbjct: 223 THRSNDTFGKFLMGKILDSFIIGILTFVILTIFRMPYAILISVIIGITNIIPFFGPFIGA 282

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             S  +++      A    +   +   I    + P ++G  I +      F ++   + +
Sbjct: 283 IPSFIIILFVAPVKALWFLVIILVIQQIDGNIIGPKILGDSIGISAFWILFSILFAGKFL 342

Query: 324 GLLGLFIGPVLMALIAVIWKESIMA 348
           GL+G+ IG  L A++  I KE + A
Sbjct: 343 GLIGMIIGVPLFAVVYSIIKEIVEA 367


>gi|188589789|ref|YP_001921436.1| hypothetical protein CLH_2055 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188500070|gb|ACD53206.1| putative membrane protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 396

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 115/356 (32%), Gaps = 17/356 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAV 64
           I+      +  +     P+L A++I +  +PI  S  +  + +                +
Sbjct: 36  ILGTTFDVIGGILSLIKPLLIAILITYILFPITKSIENFLKNNKLYKIKNKGTCRALSII 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            + ++++ + +  L  +++    ++ + +S   +       +            A     
Sbjct: 96  FSYLAIIGIILGLLCGIYFMIGGQLSKNISISNIVEYISTYLNTHSFSSSSISLALSKLN 155

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I+       N I       + F +       +    +I   +  +D    
Sbjct: 156 LPFLDAMEDHIVEVVNFIQNYITNNIGRMASFAVSIGSGLATFFIALIISIYLLKDHEYF 215

Query: 185 SQQLDSLGEHLFP-----AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               + L   +F           +   + +V      G  + A   G++   A  + G+ 
Sbjct: 216 INLWNKLYYLIFRNSKVGKKINYVFSTIHEVFGRFIRGQLLEAFFVGVLSAIALSIVGID 275

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               +G+I  +  +IP   PI  T ++  + L+ G         +   I   I +  L P
Sbjct: 276 YAFVIGIIVGLSNLIPYVGPIVGTILAAIMGLLSGTPIKIVYAIIAMIIVQQIDNNLLAP 335

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +VG  + L  + T   ++ G    GL G+ +   L A   V++        + + 
Sbjct: 336 KIVGNSVGLHAVFTMLAILIGGNIGGLFGMLLAVPLAASFKVLFNNWYTNYMKKEN 391


>gi|27380070|ref|NP_771599.1| hypothetical protein blr4959 [Bradyrhizobium japonicum USDA 110]
 gi|27353224|dbj|BAC50224.1| blr4959 [Bradyrhizobium japonicum USDA 110]
          Length = 388

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/342 (10%), Positives = 92/342 (26%), Gaps = 8/342 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++  +L   ++       + + +++G     + ++   +     T    I  +++ 
Sbjct: 35  ISVVLVTALLAFTWYFAATLLLIFTGMLLGVGLNALTNALGRRVHLPHTMRLAIVCIALA 94

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +              +   L   +     +                         +   
Sbjct: 95  LMLAGVAYLGGATIAEQASLLSKTIRSQITNVKSFLDTHGIDTSFFDFGNAAPAASTDAG 154

Query: 132 SLKILSETFLKT--------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           S    +              +    I     +  +  +    +I  ++     F      
Sbjct: 155 STPTPNTAPRGNLPGAGALASSGGAIVSQTFKLLLGTISAVGNIFIVLFLGLAFAAQPSV 214

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L  L           I   + + +    +   I+ +  G+V      + G+P    
Sbjct: 215 YHDGLLFLVPARHRTRATLIVDRISETLERWLIAQIIVMLAVGVVTWIGLAIIGIPGSFI 274

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG+   ++A IP    I    V +   +      A    +       +    L P L   
Sbjct: 275 LGIQAGLLAFIPTVGAIIAGVVVVLASLASGWIPALSALILFLGVHAMESYVLTPLLQRQ 334

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +P    F   +      G+ GL +   L+A+  V+    
Sbjct: 335 ALDIPPATLFAFQILLGVVFGIWGLALALPLVAIAKVMIDHF 376


>gi|326423645|ref|NP_759024.2| putative permease [Vibrio vulnificus CMCP6]
 gi|319998997|gb|AAO08551.2| Predicted permease [Vibrio vulnificus CMCP6]
          Length = 360

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/346 (16%), Positives = 118/346 (34%), Gaps = 3/346 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           +   I    I  I++V  +    F   +L AL++    +P+  +   K    S+  A + 
Sbjct: 17  STSLIRFAAITLIVIVCWWAFLPFLPILLWALVLAIALYPLKLAVERKLGLRSSRSATLV 76

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  + +   P   +      +  E +                + + P            
Sbjct: 77  AVIGVLVLGTPTAMVGNSFASKTLEALDSYRNGTLAVSKPTDSVKEWPLVGEKIYAAWDE 136

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +    + I        +   ++   A+           ++I   I L +      SI +
Sbjct: 137 AAVNLPVFIDKHQPQIKSIFGWVFDSAAGAAKSVFVLIGAVIIAGIMLAWAEPASASIRK 196

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S  + +      K+       +R   +G+  IA    ++ G+   LAGVP+     +
Sbjct: 197 IFISFTDPIKGPSLHKL---TTATLRQVAVGIIGIAFLTAMIFGAIVGLAGVPAASLFTL 253

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  + A++     +        L    +      +F    I    +D  L+P ++G  + 
Sbjct: 254 IALVFAIVQLPVTVVALVAVAVLWSGDSGTAHNAIFTVLIIAASFIDNFLKPIILGRGLD 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +P      G VGGV + G+LG+F+G    A    ++ + + +  + 
Sbjct: 314 VPMPIILIGAVGGVMSGGILGMFVGAAFFATGYQVFMQWVESESKQ 359


>gi|42783519|ref|NP_980766.1| hypothetical protein BCE_4473 [Bacillus cereus ATCC 10987]
 gi|42739448|gb|AAS43374.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 356

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 107/312 (34%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 43  ITPFLIACFIAYLLHPLIEKIH-KEGMPRTLAILLIYILFFGGIGYGIYKGTPVVIKQLQ 101

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 102 EINEQFPQFTKMYDSWMDGVTE----------QTANFPSFIHEKVKQIFVGVETKIQALL 151

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 152 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKLVPSKWRSTGQMLAKEIDKS 211

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 212 LGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPTLMIA 271

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 272 ATVSTSLLIKAGIAIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVGGIVGLLI 331

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 332 SVPILAVIRTVI 343


>gi|331086216|ref|ZP_08335298.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 9_1_43BFAA]
 gi|330406375|gb|EGG85889.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 9_1_43BFAA]
          Length = 373

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 101/336 (30%), Gaps = 2/336 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +   + +V  + L  +F P +   +I   + P+      + +      + I  V V
Sbjct: 15  LVSLIGTVVFVVVGFQLMRYFMPFVIGWVIAMIANPVVRWLEKRLKIVRKLGSAIIIVMV 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLS 128
           + L +  L F F     E+K  +       Q      R +     G++            
Sbjct: 75  LGLIVTGLYFGFSKAFTEIKIFIDNFPEMYQQFEEDFRQIGREFQGIFHLLPAELQVGWD 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        L T   +     A  F        +++I  +I+ + F  +   I    
Sbjct: 135 EMVNNMDQGMADLITGISEPTVTAAGNFAKRLPSILIAVIVTVISAYIFIAERDEIIVWS 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +           +       +   F     I I   L+L        V   +   ++ 
Sbjct: 195 KKIAPSAVQKKMTMVVDNFKCAVGGYFKAQFKIMIVVALILSLGLAFLKVKYVLLCAILI 254

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A++  +P     +              +      +       +V + ++P LV   + L 
Sbjct: 255 ALLDFLPFFGTGTAMIPWAVFEFLTGDYKLAIGLIILYATTQLVRQLIQPKLVADSMGLT 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L T   L  G +   + G+ +      ++  ++K 
Sbjct: 315 PLVTLVLLYVGYKMGSVFGMILAVPAGMIVINMYKA 350


>gi|313763507|gb|EFS34871.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313773444|gb|EFS39410.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313793896|gb|EFS41920.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|313801287|gb|EFS42538.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313808034|gb|EFS46515.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313811497|gb|EFS49211.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313813443|gb|EFS51157.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313816689|gb|EFS54403.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313819600|gb|EFS57314.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313822075|gb|EFS59789.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313823691|gb|EFS61405.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313826015|gb|EFS63729.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|313829484|gb|EFS67198.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|313831238|gb|EFS68952.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313834850|gb|EFS72564.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313839990|gb|EFS77704.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314914806|gb|EFS78637.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314919378|gb|EFS83209.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314920714|gb|EFS84545.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314924725|gb|EFS88556.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314930594|gb|EFS94425.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314954451|gb|EFS98857.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314957522|gb|EFT01625.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314961996|gb|EFT06097.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314963749|gb|EFT07849.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314974114|gb|EFT18210.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314976596|gb|EFT20691.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314978949|gb|EFT23043.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314986608|gb|EFT30700.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
 gi|314990965|gb|EFT35056.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315079597|gb|EFT51590.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315081174|gb|EFT53150.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
 gi|315083636|gb|EFT55612.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315087056|gb|EFT59032.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315089231|gb|EFT61207.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|315095253|gb|EFT67229.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|315099135|gb|EFT71111.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315100382|gb|EFT72358.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315106803|gb|EFT78779.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
 gi|315108932|gb|EFT80908.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327328484|gb|EGE70246.1| hypothetical protein HMPREF9338_01501 [Propionibacterium acnes
           HL096PA2]
 gi|327329650|gb|EGE71406.1| hypothetical protein HMPREF9337_01714 [Propionibacterium acnes
           HL096PA3]
 gi|327334165|gb|EGE75879.1| hypothetical protein HMPREF9344_01066 [Propionibacterium acnes
           HL097PA1]
 gi|327444271|gb|EGE90925.1| hypothetical protein HMPREF9571_02402 [Propionibacterium acnes
           HL043PA2]
 gi|327444849|gb|EGE91503.1| hypothetical protein HMPREF9570_01911 [Propionibacterium acnes
           HL043PA1]
 gi|327446335|gb|EGE92989.1| hypothetical protein HMPREF9568_00917 [Propionibacterium acnes
           HL013PA2]
 gi|327452077|gb|EGE98731.1| hypothetical protein HMPREF9584_02283 [Propionibacterium acnes
           HL092PA1]
 gi|327454886|gb|EGF01541.1| hypothetical protein HMPREF9581_01074 [Propionibacterium acnes
           HL087PA3]
 gi|327457829|gb|EGF04484.1| hypothetical protein HMPREF9586_00405 [Propionibacterium acnes
           HL083PA2]
 gi|328752324|gb|EGF65940.1| hypothetical protein HMPREF9563_02358 [Propionibacterium acnes
           HL020PA1]
 gi|328755281|gb|EGF68897.1| hypothetical protein HMPREF9579_01308 [Propionibacterium acnes
           HL087PA1]
 gi|328758238|gb|EGF71854.1| hypothetical protein HMPREF9588_00878 [Propionibacterium acnes
           HL025PA2]
 gi|328760013|gb|EGF73596.1| hypothetical protein HMPREF9343_02296 [Propionibacterium acnes
           HL099PA1]
          Length = 404

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 104/332 (31%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 63  VLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATTAGTA 121

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    ++ + +     + +L S +    +    +  W + +                
Sbjct: 122 VIVVLAAGVVGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQDVIA-------- 173

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +            II ++  + F   D   +  +L 
Sbjct: 174 ---------DKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMIFMVMDTPQMHDRLR 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 225 MA--GSRKPDVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 282

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  ++  F++   ++P   G  + L 
Sbjct: 283 LTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQSIIQPKFAGDAVGLT 342

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 343 PTMSFVSLLLWGWVFGALGTLIALPCSLLVKA 374


>gi|288561240|ref|YP_003424726.1| hypothetical protein mru_1984 [Methanobrevibacter ruminantium M1]
 gi|288543950|gb|ADC47834.1| hypothetical protein mru_1984 [Methanobrevibacter ruminantium M1]
          Length = 361

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 130/322 (40%), Gaps = 13/322 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           VL   +I +   PI +   +K +  S     I+    + L ++PL+ LF Y   E+    
Sbjct: 2   VLLGAMIAYGLTPIANKIQTKIKYPS-----ISIFLALILVVIPLILLFAYVFYEITVFA 56

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
                ++           +   G    EL      +  SL          + + ++  + 
Sbjct: 57  DVFFNSSDLAGMDINNALNAFVGNLPVELQGFIKPYMGSLSTG-----LESALSYVLAYT 111

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
            +    F +  + +  +I ++++F RDG  I + +     +   A++ +    +  V++S
Sbjct: 112 VKLVKGFSNVLIQLFVLICSIYYFTRDGDLIWENIFVFIPNEHKAFFDRTFYEIANVLKS 171

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK- 272
            F G  + A+  G++ G  Y+L G    + LG+IT I  +IP   P           I  
Sbjct: 172 IFYGHFLTAVIIGVMGGVGYYLLGYKFALFLGIITGIFQLIPIFGPWIVYWALAIYAIFV 231

Query: 273 -GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+I  A    LWG +   + D  +RP L      +P L    G + G    G++G  +G
Sbjct: 232 AGDIVQAVLTVLWGFVL-SLSDMYIRPVLASNYADMPSLILLVGFMAGPYVFGIVGFILG 290

Query: 332 PVLMALIAVIWKESIMAIKENK 353
           P+++ +   + K     ++++ 
Sbjct: 291 PLILGVCYAVIKSLKEELEKDN 312


>gi|315093474|gb|EFT65450.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
          Length = 386

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 119/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +  +L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQALHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   S +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPEPPANEVPPSHD 379


>gi|254822894|ref|ZP_05227895.1| hypothetical protein MintA_23394 [Mycobacterium intracellulare ATCC
           13950]
          Length = 380

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 90/307 (29%), Gaps = 13/307 (4%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           ++         +  +    +    L F+    +  +  L  +V  + +            
Sbjct: 67  RRGLPRGGAVALVLLGGFAILGGILAFVILQFIDGLPGLTEQVTQSIESTRR-------- 118

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               W         S        +      N    +   A        +   + + ++  
Sbjct: 119 ----WLINGPAHLRSEQIDSAGNAAIEALHNNQAKLTSGALSTAATVTELVTAAVLVLFT 174

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L FF   G +I + +  +          +        +        ++A+ +   +G+  
Sbjct: 175 LIFFLYGGRNIWRYVVQIIPAHVRDRVHEAGNAGYGSLIGYVRATFLVALTDAAGVGTGL 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + G+P  + L  +  + A IP     IS     +  L+   I  A            + 
Sbjct: 235 AIMGIPLALPLASLVFLGAFIPLIGALISGLLAVVVALLAKGIVYALITLGVLIAVNQME 294

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              L+P ++G  + +  L     +  G    G++G  +    +A +   ++  +    E 
Sbjct: 295 AHLLQPLVMGRAVSIHPLAVVLAISTGGVLAGIVGALLAVPTVAFLNNAFQVLLAPNPEA 354

Query: 353 KEKISSN 359
           + +  + 
Sbjct: 355 EAEKQTE 361


>gi|300787453|ref|YP_003767744.1| hypothetical protein AMED_5588 [Amycolatopsis mediterranei U32]
 gi|299796967|gb|ADJ47342.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 389

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 104/347 (29%), Gaps = 14/347 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + ++      L     PV  AL++     P  S    K +      A I  V
Sbjct: 34  RSLIVAGALTVVGFVAVKLASVLVPVAVALLLAGLFSPAVSWLAGK-KVPRGLAAAIVLV 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    + F+     + M  L+ +V  +                  W          
Sbjct: 93  GGIGVAGGVVTFVVISVTVGMPALIDQVTASLTDL------------HTWLRTGPLHLSQ 140

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 + + T         I   A    +   +     +  +  L FF   G  I   +
Sbjct: 141 VQLDEMLGNLTATLGRNKSAIASGALTTAVTVGELLAEALLAVFCLIFFLAQGRVIWVFV 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R     +     G   +A+ +   +     + GVP    L  + 
Sbjct: 201 LRAVPAGLRNRVDVAGRSGFTTLAHYIRGTAAVALVDAAGISLGLVIIGVPLAAPLSALV 260

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P     I+     +  L+   ++ A  +       + +    L+P L+G  ++L
Sbjct: 261 FLGAFVPVIGSVIAGAIAVLVALVANGVWAAVIVLAVVVGVMQLESHVLQPLLLGRAVRL 320

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             L     L  G+ T G++G  +   L+A+ +   +      + +  
Sbjct: 321 HPLAVVLALTIGLVTAGIVGALLAVPLLAVFSSGVRSLATRPENHSP 367


>gi|224371796|ref|YP_002605960.1| PerM [Desulfobacterium autotrophicum HRM2]
 gi|223694513|gb|ACN17796.1| PerM [Desulfobacterium autotrophicum HRM2]
          Length = 355

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 108/353 (30%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++ + +P+    ++ +   L  +Y       PVL A+II +    +    + + +     
Sbjct: 10  KKNISDPKLFYLFLSISFGLAVIYLFGEMLTPVLVAVIISYLLEGLILQLM-RLKVPRIV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  +  F + +++       E+ +L  ++             L +    +    
Sbjct: 69  SVTMVFMVYLIAFTITVIWFIPLISREIIQLFQQLPSMLARAQGQLESLPEHYPELVTVS 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +  +   S          +     +  F+         + + ++ +   +FF  +D 
Sbjct: 129 QVQELYAFISSSL--------SAIGKQVLAFSFSSVKELATFTVYLVLVPFLVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   ++             +   V   I +   G     +         Y L GV   
Sbjct: 181 EMLIGWINRYSPPAN-DLVTTVLTAVNLQIANYIRGKGWEVLIIWAGTWVCYHLIGVQYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L  ++ I  ++P          +I +     G            +    +    L P 
Sbjct: 240 LLLSFLSGISVILPYIGVTVVFLPTILIGYFQFGWDVRFLYTVSAYSAVQLLDGFILAPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+ G + L  +     ++      GL GLF    L  L+  +    ++  +E 
Sbjct: 300 LLAGVVDLHPVVIVIAILFFGNLWGLWGLFFAIPLATLVKALLDIWMVRQRER 352


>gi|309780744|ref|ZP_07675485.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
 gi|308920426|gb|EFP66082.1| conserved hypothetical protein [Ralstonia sp. 5_7_47FAA]
          Length = 350

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/348 (13%), Positives = 116/348 (33%), Gaps = 11/348 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--SSTFLAVIA 66
           + +    +  + ++ +Y +       + A+   +  +P+      +       +    + 
Sbjct: 10  RIVWTVFLFALAVLIIYKIASVLLVTVFAVFFSYLLYPLIEQLERRMPRQAPRSVSIGVV 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V+ + IV           E   L  ++           R           + +    
Sbjct: 70  FILVVLVVIVAGSVFGVTVQEEAGRLADQLPKLLDTSTMADRLALPNFLEPLRARILEFL 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +    +   ++  G+           M      + ++ + I  F    +  SI  
Sbjct: 130 REQLSTTSDQAMPLVRNIGLG---------VMHAASNLVYLVLIPIMSFLMINEAPSIHA 180

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L S         W  I   +  ++      + ++++   L    A++L GVP  + L  
Sbjct: 181 ALLSWIRSSDKRLWGNIIDDLDTLLSRYVRALLLLSLATLLFYSIAFYLLGVPYALLLAT 240

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             A++  IP   P++     + + +     +   L  +  +     D  L P+L+   +K
Sbjct: 241 TAAVLEFIPFAGPLAAVVAIVTVAVFSGYPHLFWLIGFIVVYRLFQDYVLNPYLMSEGVK 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  L    GL+ G +  G+ G+F+   ++A + ++   +  A    +E
Sbjct: 301 VSPLLVIVGLLAGEQLGGVAGIFLSVPVIAALKIVLSRAWAAQSLGRE 348


>gi|220919916|ref|YP_002495219.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
 gi|219952336|gb|ACL62727.1| protein of unknown function UPF0118 [Methylobacterium nodulans ORS
           2060]
          Length = 386

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 106/333 (31%), Gaps = 11/333 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +  ++ +LY  +    P + AL++     P+      +    ++  A +  + V 
Sbjct: 46  ILVLSLLAVVYTLYLGRELILPTVLALVLKLLLGPVMRILHERLRLPNSLAAALLILVVF 105

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                    +     + ++     + L  +    +   L  +  G+ A E  T  +    
Sbjct: 106 GAIAGVGFTISIPASVWIQRAPESLSLLKEKLAVLHHPLDLLQQGLHAIENLTGTIGQEG 165

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +        T         A           +     +I LFF    G  + +    +
Sbjct: 166 QNQ--------TITTRPASGLAGYLATGTATILVRFFTTMILLFFLLASGDRLLRGFIEV 217

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +I+  +   I    L +T++    G+  G A W  G+ + +  G    +
Sbjct: 218 LPSFSNKRQAVEIAHEIGTNISGYLLTITMMNTLVGVATGLAMWACGLGTPLLWGATAFL 277

Query: 251 MAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP   P++   +     +L     + A        +      +T+ P L+     L 
Sbjct: 278 LNYIPILGPLAGLVIFFVAGVLSLDWPWYALMPVGLYLLIHIAEGETITPMLLAKRFTLN 337

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +     L       G+ G  +   L+A++ ++
Sbjct: 338 PVLVIVSLFFWHMLWGVPGALLAVPLLAMLKIV 370


>gi|51473810|ref|YP_067567.1| permease [Rickettsia typhi str. Wilmington]
 gi|51460122|gb|AAU04085.1| possible permease [Rickettsia typhi str. Wilmington]
          Length = 351

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 122/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   +   + + + + S   +     P   A II +   P      SK E S+ F + I
Sbjct: 1   MNRTAVFLLVFLTLSISSFMLIPDTIKPFFIAFIISYLLQPAIYFIESKLEISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F +    L      ++  L++ +     +          +P  M        
Sbjct: 61  MYLIFLSIFFLIFTILVPIIYGQIFTLINNIPKYKDYLQSEI-----LPPIMEKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKHSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWNKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ S   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILEILSAINNLLSSYIRGQLNICLLLSTYYSIAFTVIGLDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   I        L P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLIIGYLTFGITSKLLYIMIIYLIGNIGESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFAIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|312131790|ref|YP_003999130.1| hypothetical protein Lbys_3116 [Leadbetterella byssophila DSM
           17132]
 gi|311908336|gb|ADQ18777.1| protein of unknown function UPF0118 [Leadbetterella byssophila DSM
           17132]
          Length = 343

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 140/351 (39%), Gaps = 18/351 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q ++   I+F  L+  ++L  +    L+A+ +       Y     +K  +    A++
Sbjct: 10  IINQIVLIIAIVFSCLLIFHYLNYYLPGFLAAITLYIVYREWYFRLTEQKRWNKVLTALL 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   ++PL  L  Y +  +   +       Q    V  ++S  P           
Sbjct: 70  FIFFSIVFIVLPLWGLIDYMIPRLSVFLDNTDSIMQKFNQVKEYMSKKPVLENI------ 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                             + +  + ++  R      +  L+++     L+F    G  + 
Sbjct: 124 ----------DLSDEALADFLQSLTKYLPRILNSVAEVLLNMLVAFFVLYFMLVSGRKLE 173

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            QL     +   +   ++   +  ++R+  +G+ I+ + +GLV    Y+L GV + V  G
Sbjct: 174 NQLTHFFPYSEVSRQ-ELWSEIKLMVRTNAIGIPILGMCQGLVAMLGYYLFGVENAVLWG 232

Query: 246 VITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++T +  + P    ++    + I     G   NA  L L+    +  +D  LR  L+   
Sbjct: 233 IVTGVATVFPVLGTMAVYVPICIVSFATGEWTNALWLTLYCFFLVGGIDNVLRFTLLKTL 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +  L T FG++ G++  G+LGL  GP+L++ +AV++K  +      KEK
Sbjct: 293 GNVHPLITVFGVLLGLKLFGMLGLIFGPLLLSSVAVLFKVYLNEYGRPKEK 343


>gi|314986760|gb|EFT30852.1| conserved hypothetical protein [Propionibacterium acnes HL005PA2]
          Length = 386

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 118/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWGALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|298490663|ref|YP_003720840.1| hypothetical protein Aazo_1509 ['Nostoc azollae' 0708]
 gi|298232581|gb|ADI63717.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 365

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/345 (11%), Positives = 111/345 (32%), Gaps = 12/345 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  ++++  + + +   + +  A+++ F        F  +         V   +  +
Sbjct: 19  IAILNGWLVIQVIQYFQPLVSVISVAILLAFVLDYPIKFFHKR-GVPRNLAIVGVLLIAV 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + L      ++ ELV+ + +    G    +   +            + L    
Sbjct: 78  VILGAVGVILVPLIFQQLNELVNILPVWIDSGTKQLQVFLNW-------AATQQDLPVNI 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S          ++           F    + + ++++  ++   +   +G  +   +   
Sbjct: 131 SGLATQLLERISSQFQSFTGKILSFAFDTIGFLVNLLLAVVLTIYLTLNGEKLWSGIYQW 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    +++ +      ++ F+G   +     + +  A+    +P  +  G+   I 
Sbjct: 191 FPSNISTKVRELLKE---DFQNYFIGQATLGAILAVTVTLAFVALRIPLALLFGIGIGIF 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++ P G  I    VS+ +    N +    +         I    + P ++G    L  + 
Sbjct: 248 SLFPFGTGIGIGIVSLLVA-LENFWEGVEVAAIAVTIDQINSNIVAPRILGNLTGLNPVW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               L+ G +  G+LGL +   + + I  I            E++
Sbjct: 307 VVISLLIGAKLGGVLGLLVAIPIASFIKDIADSWRAGELRRVEEV 351


>gi|314922878|gb|EFS86709.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
 gi|314980835|gb|EFT24929.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315090278|gb|EFT62254.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|327327089|gb|EGE68870.1| membrane spanning protein [Propionibacterium acnes HL103PA1]
          Length = 386

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 119/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +  +L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQALHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   S +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPSHD 379


>gi|34581399|ref|ZP_00142879.1| putative permease perM homolog [Rickettsia sibirica 246]
 gi|28262784|gb|EAA26288.1| putative permease perM homolog [Rickettsia sibirica 246]
          Length = 351

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 118/350 (33%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + +   +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNRTVIFWLVFLGFFISGFMLISDAVKPFFIAFIISYLLQPAIGFIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +   N +          +P  M        
Sbjct: 61  IYLIFLSIFFLSLTILVPIIYGQIFTFINNIPKYNNYLQAEI-----LPPIMVKIYSIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLSNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 ANMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTVIGIDLALLLG 235

Query: 246 VITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP           + I  L  G       + +   +          P ++G 
Sbjct: 236 ILTGFLVIIPFLGTFISFLLTLMIGYLTFGVTTKLLYIMIIYLVGNICESYIFTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|229006725|ref|ZP_04164359.1| hypothetical protein bmyco0002_36270 [Bacillus mycoides Rock1-4]
 gi|228754586|gb|EEM03997.1| hypothetical protein bmyco0002_36270 [Bacillus mycoides Rock1-4]
          Length = 315

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 106/312 (33%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 6   ITPFLIACFIAYLLHPLIEKLY-KEGMPRTLAILLIYILFFGGLGYGIYKGTPVVIAQLQ 64

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 65  EINKQFPQFMKMYDSWMDGVTE----------QTDNFPSFIHEKVKQIFVGIEMKIQALL 114

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D               + +  + +++ + K 
Sbjct: 115 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHVFWKFVPSKWRSTGQVLAKEIDKS 174

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W  G+   + LG+I  +  +IP   PI     ++ + 
Sbjct: 175 LGSYIRGQLFVCLVLGGVSALSFWFIGMKYPLLLGIIVGVTDIIPYFGPILGAIPTLMIA 234

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 235 ATVSTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEIGGIVGLLI 294

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 295 AVPILAVIRTVI 306


>gi|256826953|ref|YP_003150912.1| putative permease [Cryptobacterium curtum DSM 15641]
 gi|256583096|gb|ACU94230.1| predicted permease [Cryptobacterium curtum DSM 15641]
          Length = 405

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/348 (11%), Positives = 114/348 (32%), Gaps = 11/348 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +++++    L  L       +   +I F    + +  +            ++ V 
Sbjct: 38  AIGSIVLLYLCGQVLTILAVPVGIAVWTAVIVFCLRNVVNRLVRYM--PRAVAVSLSYVL 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +F + +  +         +  S +    Q    + RW +++ G         +    
Sbjct: 96  MIVVFGLVVWLMSSPFFGIGAQFSSIIESTPQLAGEISRWYTELSGTYPDIMQSPQVAQW 155

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              ++    T+ +      I   A   G    +  + I F ++  ++   D  ++ ++  
Sbjct: 156 LVDIQNSLITWTQQAASSGISGLA-SVGASAANSFICIGFALVVAYWVLLDAPAMGREAY 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +      A  + I     +V+     G  +  +   ++    +++ GVP+ +A  +I  
Sbjct: 215 RICGDAHAAELRFIHETFTRVVGGFIQGTLLQCLIIMVLCMIVFFVLGVPNAMAFALICG 274

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ +IP   P      +    +    ++A    ++      +V   + P ++   + +  
Sbjct: 275 ILNIIPVVGPWLGGVAAALAALSVGPWSALLSLVFTIAIQQVVYTFVSPKIMSSSVDVHP 334

Query: 310 LPTFFGLVGG--------VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +     ++ G             + G+ +   L A    +    +   
Sbjct: 335 MIVIMAMMCGSALGAQMSGFMGSITGMLLSIPLAAFAKALIVHVLERR 382


>gi|314968424|gb|EFT12522.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
          Length = 404

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 104/332 (31%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 63  VLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATTAGTA 121

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    ++ + +     + +L S +    +    +  W + +                
Sbjct: 122 VIVVLAAGVVGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQDVIA-------- 173

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +            II ++  + F   D   +  +L 
Sbjct: 174 ---------DKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMIFMVMDTPQMHDRLR 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 225 MA--GSRKPDVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 282

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  ++  F++   ++P   G  + L 
Sbjct: 283 LTNYIPNIGFIIGVIPPALLALFKDGWVAAVAVVVSYSVLNFVIQSIIQPKFAGDAVGLT 342

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 343 PTMSFVSLLLWGWAFGALGTLIALPCSLLVKA 374


>gi|115376481|ref|ZP_01463715.1| putative membrane protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366484|gb|EAU65485.1| putative membrane protein [Stigmatella aurantiaca DW4/3-1]
          Length = 396

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 116/349 (33%), Gaps = 2/349 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +I+  I + L     FF     A ++      + +    +        A +  V
Sbjct: 14  RRVFVGLILLSIALLLLVASPFFEAFFLAAVLAGAFQGMQTWLTRRLRGRRGLSAGLICV 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   + P+  L  + + E+ + V  V    Q+                          
Sbjct: 74  GFVFALLAPIAALTAFIVSEVIKGVQFVAGIIQNRGLEGLMTYVPGRLQGPVGRLLDRFQ 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +     ++                       + M+IA +F   +G  +   +
Sbjct: 134 AESAGLWQTLQEQVSSQGATAAHTFGGLVAATGSLAFQAVMMLIAFYFLLVEGKQLVAWI 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +S+   L      ++      V RS        A  + L     +++ GVP  V    +T
Sbjct: 194 ESVSP-LRRGQTTELLTEFRGVTRSVLSSTLATAGVQALAALVGFFITGVPVPVFFAAVT 252

Query: 249 AIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A+IP          +  LL+  G+   A  L LWG I + + D  ++P L    + +
Sbjct: 253 FFFALIPAIGAAVVCVAAAVLLLATGHPVAALVLALWGIIVVGLADNVVKPLLARRGMNM 312

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                FF L+GG+   G +GL +GP+++A    + +           ++
Sbjct: 313 HGAIVFFALLGGLAVFGAIGLLLGPLIVAFFLSVVRIYQRDYGRTSARL 361


>gi|150389949|ref|YP_001319998.1| hypothetical protein Amet_2180 [Alkaliphilus metalliredigens QYMF]
 gi|149949811|gb|ABR48339.1| protein of unknown function UPF0118 [Alkaliphilus metalliredigens
           QYMF]
          Length = 359

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 117/330 (35%), Gaps = 6/330 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I +I    +   +  F PV+ +  + +   P+      K   S     ++  V ++ + 
Sbjct: 24  LIDWIFNPLIVIFQTLFIPVILSGFLFYLLRPLRDVINKKL--SKGVSILLLYVFLIFIM 81

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I   + +      +++ L   + +           + +        +             
Sbjct: 82  ISLFIIIGPILQRQLQSLTDNMPVIISEIQRSVINIQE----SGIFQGNQLSEMLNVEEF 137

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I     L       I    + F  +  +  L +I +   LF+  RDG    + + ++   
Sbjct: 138 IFQLGDLLNELGKNIASNVASFIGVLANAVLVLIIVPFILFYMLRDGERFGKSILNIFNE 197

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + I + +   + S   G  I+ +  G++    + + G+   + L VI  +  +I
Sbjct: 198 KQRGEVEDILKEIDTTLSSYIQGQGIVCLCVGILCYITFLIVGLDYALLLAVIAGVTNII 257

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P   T  ++ + +  +   A  + +   +   I    + P ++G  +K+  +   F
Sbjct: 258 PYFGPWIGTFPAVIVALFQSPMMALLIVVTVVVIQQIESNLIAPQVIGKKLKMHPITIMF 317

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            ++   R +GL+G+ +      +  V++  
Sbjct: 318 LILVAGRLIGLIGMILVVPTYGICRVLFTH 347


>gi|119509999|ref|ZP_01629140.1| hypothetical protein N9414_20165 [Nodularia spumigena CCY9414]
 gi|119465323|gb|EAW46219.1| hypothetical protein N9414_20165 [Nodularia spumigena CCY9414]
          Length = 383

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/349 (15%), Positives = 133/349 (38%), Gaps = 9/349 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + +F  +V L+ L+     ++ A++I     P+ ++   K         ++  +S+
Sbjct: 14  LLLIVAVFFFVVLLWQLRSLILTLMIAVVIAAAIAPLVNA-AEKLHLPRWLGVIVVYLSL 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   I   L +      +++ L SK+ +   + +      +   G      +        
Sbjct: 73  IFGLIGAGLIIGPSVSEQIQRLASKLPIYLDNLLIAAENFAFRLGITQIESVEEFFD--- 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I S T         +   +  F   F+   +++I  ++   +      ++ + L S
Sbjct: 130 ----IQSLTNWLFRSSQQLVVRSFGFTRGFIGGVVNLILALVMSGYMVAGSKNLIKGLVS 185

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITA 249
           L    +          + + +     G  +++   G+V+     + G+    +ALGVI  
Sbjct: 186 LFPQPWDERLADQVIPISRRMGGYIQGRVLVSAILGVVITLGLRILGLSEFALALGVIAG 245

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +IP   P+     ++ + I  +      + L   +   +    L P LVG  +++  
Sbjct: 246 FTNLIPFVGPVLGAVPALIVAIPQSGLTFLWVLLLFVLIQNLETYVLDPLLVGSSVRVRP 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L     ++GG + +G++G  I P  +A + V+ +   +  K   E+ S+
Sbjct: 306 LYQLLAVLGGTQVLGIIGAVIVPPWVAGVGVLVENLYLQPKLLNEEKSA 354


>gi|224825906|ref|ZP_03699010.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
 gi|224602130|gb|EEG08309.1| protein of unknown function UPF0118 [Lutiella nitroferrum 2002]
          Length = 360

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 69/350 (19%), Positives = 141/350 (40%), Gaps = 5/350 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   ++  ++   L  +  F   +  A+II  ++WP+Y              A++  + 
Sbjct: 14  VLRVAIVALLVWACLQVILPFLGALTWAVIIAISAWPLYQRLTQCLRGRGNLAALLVVLL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPGGMWASELWTKHLS 128
           +     VPL  +       +  L             P P WL  IP    A   +     
Sbjct: 74  LGLALAVPLGLMVLTLTDTLPHLNGIAHGLANFTLPPPPAWLGKIPLTGEALTQYWVTAQ 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +         G  ++    +  G+  L+  ++II   + L     +G ++ +  
Sbjct: 134 TDLPGLLARLKPWINQGALWLLGRGAMLGVSLLEIVMAIIVAGLLL----ANGEALWRIA 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +   L  A   ++ ++V + IR    G+   A+ + ++      +AGVP  +ALG + 
Sbjct: 190 ERVINKLGGASASELPQVVARTIRGVTTGVVGTALAQTILCVIGLLIAGVPGALALGFLC 249

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A+      + +   + ++   G       L LWG + +  +D  L+P L+    KLP
Sbjct: 250 FVIAVAQLPTLLVWLPAAGWVFYTGATGMGVFLLLWGFLLVNTIDNVLKPLLISQGAKLP 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
               F G++GG+   G++GLFIGP L+A+   +++  +   +E + K   
Sbjct: 310 LSLIFLGVIGGLLAWGIIGLFIGPTLLAIGFTLFQFWLNNDEEAEAKPEH 359


>gi|209527315|ref|ZP_03275824.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
 gi|209492241|gb|EDZ92587.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
          Length = 382

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 114/340 (33%), Gaps = 4/340 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +    I +  L+ +K     + +A+++      +   F  + +   +    ++     
Sbjct: 7   IGFTAFLIAIYILWRIKQALLMIFAAVVLATALNRLTRQFQ-RLKLPRSLAVFLSISLFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP---GGMWASELWTKHLS 128
              I+  L +    + ++++L  +V    + G+ +   L D           E  ++   
Sbjct: 66  LGIIIGFLLVVPPLINQLEQLAKQVPAGLEQGLKLLNLLIDYLRTDLNGPLREYLSEVSR 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + ++I           + +           ++  +SI+ +++       D  +  +  
Sbjct: 126 DLRQIRIEQIIQQAQALSNQLIGGFGVVVGTTVEGLVSILLILVLTMMLLADPQAYRRSS 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +      I       +    +G  +  I   L+     W+  VP   A  ++ 
Sbjct: 186 LQLIPAFYRRRMNHILDTCEIALGRWLIGALLNMICVTLLTVIGLWILRVPLIFANAILA 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P       + + +  + + AT + +   I   I    + P L+   + L 
Sbjct: 246 GLLNLIPNIGPAVSVIPPMAIALLDSPWKATLVVMLYIIIQQIETAVIMPSLMAYQVSLL 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T       +   G  GL +   L  +  V+ KE ++ 
Sbjct: 306 PAITLLAQGFFLTFFGFGGLVLAFPLAVVGQVLIKEILIR 345


>gi|298373571|ref|ZP_06983560.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274623|gb|EFI16175.1| membrane protein [Bacteroidetes oral taxon 274 str. F0058]
          Length = 362

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 121/336 (36%), Gaps = 9/336 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             S+ +L G   P +   +I +   P+      +    S  +++I  + ++C  +  L  
Sbjct: 25  FFSIRYLYGVLLPFVIGWLIAYFIHPLVCFIQYRIRVKSRIVSIILALLLVCGVLFGLGM 84

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + E  E+   + L +++   +  +       +   ++  + L + + + + +   
Sbjct: 85  LIIPIIYE--EMSKIIPLVDKYLQDINAYPFINEVLIKNLQIHFEALDYKKLISLDTLNV 142

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +       S    + L    ++ F ++ + F  +D   +S  +  L    +  + 
Sbjct: 143 IIGKVVPQFWGLMSNLWQVVLA-IGTMFFTVLYVIFILKDYEKLSDNMIKLFPKHYRNFA 201

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +++   +   +   F G  +I +   ++    + + G+P  + +G++  I++ +P    +
Sbjct: 202 QELQTDLSGAMNRYFRGQALICLIIAILYSIGFTIIGLPMAIVMGILMGILSFVPYLHSL 261

Query: 261 SFTAVSIYLLIKGN------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
            F  V  +  I               + +   I     D  L P ++G  + L       
Sbjct: 262 GFIPVIFFAFINSAETGNSLGLMLLGILIVFVIIQLSTDAFLVPRIMGKNMGLSPAIILL 321

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L       G LGL I      +    +K  ++  +
Sbjct: 322 SLSTFGVMFGFLGLIIALPFTTIAIAYYKRLVIEKE 357


>gi|309390041|gb|ADO77921.1| protein of unknown function UPF0118 [Halanaerobium praevalens DSM
           2228]
          Length = 355

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 109/302 (36%), Gaps = 4/302 (1%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   P+         ++ +   +I+ + ++ +  +   F       + KEL   +  + 
Sbjct: 51  YYLMRPLVRFLEP-IVKNKSLSIIISFLVIVAILTIVFYFGGSIIYNQGKELSQNLSGSY 109

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
            +       + +        +         Q         L     ++            
Sbjct: 110 SYLYNYILEIIESIKQYIDLDNSFLEELQIQEKLFSYLNNLAQKISNY---NYMGIFSSI 166

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            ++ L I+ +   LF+  +D   +   +  +        +++++  + +++ +      +
Sbjct: 167 TNFGLIILLIPFILFYLLKDDQKLFNNILHIIPENKKEEFEEVASEIDQLLSTFISSQVV 226

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +A   GLV+   + +  +P+   L  I  I ++IP   P   +  +I++    ++F    
Sbjct: 227 VAFFLGLVMFFGFLIIQLPNAAVLAFIAMITSLIPIIGPFFGSLPAIFVAATNSLFLFIG 286

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + L   I  ++    +RP + G  +++  L   F ++ GV   G +G      L  ++ +
Sbjct: 287 VALIILIAQYLEGNLIRPLVQGRRLEIHPLVVLFVVLSGVYLFGFIGALTSVPLYVVLRL 346

Query: 341 IW 342
           ++
Sbjct: 347 LF 348


>gi|157374839|ref|YP_001473439.1| hypothetical protein Ssed_1700 [Shewanella sediminis HAW-EB3]
 gi|157317213|gb|ABV36311.1| protein of unknown function UPF0118 [Shewanella sediminis HAW-EB3]
          Length = 359

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 106/336 (31%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+       K         +A +
Sbjct: 12  KGFAIMAFIVVILAGIKAASPIVVPFVLSAFIAVICNPMIGGLTRLKVPR-----ALAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E  +++       +    W++             + L+
Sbjct: 67  LMMVFIVMMGLWLAQIVGSSINEFSTQLPHYRDQLVEQFGWITGKLRTFNIIITKEQILA 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   L F   D     QQ+
Sbjct: 127 YFDPGIALSMTTNMLSGVGSVMANLFLIILTVVFMLFESETLPKKLHFALDDPDMRMQQI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                     +    +  T++++  G+++G+   + GV   +  GV+ 
Sbjct: 187 DRFL----------------HSVNQYMVIKTLVSLATGVIIGTGLAIIGVDYALLWGVVA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     S+ L         A    L       ++   + P  +G  + L
Sbjct: 231 FLFNYIPNIGSIIAAIPSVMLAFIQLGPAAAGGTALLYLGTNTVMGNVVEPKYMGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 291 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 326


>gi|67923851|ref|ZP_00517311.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67854314|gb|EAM49613.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 354

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/348 (16%), Positives = 135/348 (38%), Gaps = 5/348 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    I  ++I  ++      ++ F   VL  +I+    +P++    +          VI
Sbjct: 10  IVDLIIRLFLIGLLLAWCFLLIRPFLGIVLWGIILAIAIFPLFLWLKNLLGGRGKLAGVI 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+  + + I P+  +    +   +     +   +    P P  +   P          +
Sbjct: 70  LTLLGVGVIIGPVSVISTIFVNNAQAFADSLASGSLVIPPPPEGIETWPVIGERVNRIWE 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S   +  +             +   A+  G++ L + +SII   I +     +   ++
Sbjct: 130 LASVNLASVLSQFQPQLEALAKNLLFLAANIGVVLLKFIVSIIIAGILI----INAEKLN 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +   + P   ++  ++    IR    G+  ++  + L++G  + + G+P    L 
Sbjct: 186 SRIRQVFLRITPKQGQEFLQLATGTIRGVTRGIIGVSALQSLLIGIGFMIGGIPFAGLLT 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++A+I  G+ +      I+         A    LW  +   +VD  L+P L+   +
Sbjct: 246 LLCLVLAIIQIGSGLVVFPAIIFAWSTMGTVTALLFTLW-MVPCTLVDNILKPILMSKGL 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +P +    G++GG    G+LGLFIGPV+++L   +    I    +  
Sbjct: 305 PVPTIVILMGVLGGTLVHGILGLFIGPVILSLGYELLVAWINQEVQPN 352


>gi|218778346|ref|YP_002429664.1| hypothetical protein Dalk_0489 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759730|gb|ACL02196.1| protein of unknown function UPF0118 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 356

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/343 (18%), Positives = 135/343 (39%), Gaps = 4/343 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                + +  I    + L+ FF+ ++ A ++     PIY   + K +      + +  V 
Sbjct: 13  IFFLALYIISIGFMGWLLRPFFSILVLAFVVTGVFTPIYRLLLKKMK--PGAASGLTCVI 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +  +P L      + E    +  V  A           +          +    +  
Sbjct: 71  IFLVLFIPTLLFAGIVVSEAVGFLDMVNKAALPDQIRTFINNSTLLETINQHIDDYGIVI 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +    + + +      F+           L + L+ +FM++ +FF   DG  +   L 
Sbjct: 131 SGAEITQAASQIGQFVGGFLLDSGKAVVSNVLSFVLNFLFMVLIIFFILIDGGKLVDYLV 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +   L     +K+      +  +  LG  +  + +G++ G+ + L G+PS    GV+  
Sbjct: 191 DMSP-LPQDQDEKLVAKFKDMSGAVILGNGVCGLAQGILGGAVFALFGLPSPFLWGVVMG 249

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I+A +P     + F   +I + I+G I       ++ +I  F V+  ++P LVG  +++ 
Sbjct: 250 ILAFLPIVGIGVVFLPAAIIMFIQGKIATGVFFIIFYSILSFSVEYVIKPKLVGDRVQMH 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L  F  ++GG++  G+LG+  GP+++     +      + K 
Sbjct: 310 PLLVFLAIMGGLKIFGILGVIYGPLIVTFFLTLADIYRASYKA 352


>gi|32473117|ref|NP_866111.1| hypothetical protein RB4458 [Rhodopirellula baltica SH 1]
 gi|32397796|emb|CAD73797.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
          Length = 342

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 90/335 (26%), Gaps = 14/335 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++      LY  +     +  +++I      +            +    +  V     
Sbjct: 17  VLLVVATAGLLYVARNLLPLIFGSVLIAVVLNQLADLVGRWVPLDLSRTTRVGLVISTIA 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L               S    A Q        + +     + S      +      
Sbjct: 77  VVSCLTM------------YSFANSAAQKAAQFKDRIENSVQETFESVKQQPLVEDHLEE 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                + + ++G       A  F           + ++I   +F             +  
Sbjct: 125 DAKLSSMMPSSGKSI--GLAKNFFASAFGGMADFLILLILSIYFALSPDKYRVGAIRMLP 182

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
             +      +       +    +G  I     G+V G    + GVP  + LGV   ++  
Sbjct: 183 TGWREKTSGLLSQSSTTLWRWMIGRLIAMALVGVVFGIGLAVIGVPMPLELGVFAGLVTF 242

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP    I+    ++ L  +        + +   +   I    + P +    ++LP     
Sbjct: 243 IPNIGGIAAVVPALLLASQQGSTALISVLVLYLVIQTIESYLITPMVQEHQVELPPAMVI 302

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              + G    G  G+     + A+  +  K+  + 
Sbjct: 303 LAQIIGGLVFGFWGIVFATPMFAVSMLWIKQIYVE 337


>gi|258652494|ref|YP_003201650.1| hypothetical protein Namu_2284 [Nakamurella multipartita DSM 44233]
 gi|258555719|gb|ACV78661.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 406

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 89/309 (28%), Gaps = 16/309 (5%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P  S  I+ +              +  L    +       + + + LV          
Sbjct: 101 LEPAVSWLITHR-FPRWAAVFTVLAGLTLLLAGFIAAAIPALVEQGRRLVEAAPQYVAQL 159

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                 +  +       E   + +                 G   +       G      
Sbjct: 160 SDDSSAIGQLNQRFHLQETVQQIVD---------------GGGPGLASGVISVGEAVFGA 204

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              ++ + +   +F  D   +   L              +   +   +    LG  +I++
Sbjct: 205 FSGLLVVAVLTVYFLADMPRVRTTLYRFMPAPRRPRAILLGDQIMVKVGGYVLGNVVISV 264

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
              +V        GVP  + L ++ A++ +IP    +   A+        ++        
Sbjct: 265 ISAVVTFVWLIAFGVPYPLLLAILFALLDLIPVIGSLIAGALVALAAFSVSVPVGLATIG 324

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +      + D  L P + G  +++P L T   ++ G   +GL+G  +     A I ++ +
Sbjct: 325 YFVAYKLVEDYLLTPKVFGRVLRMPALVTVCAILIGGALLGLVGALVALPTAAAIMLLVQ 384

Query: 344 ESIMAIKEN 352
           E +    + 
Sbjct: 385 EVVFPRLDR 393


>gi|296332096|ref|ZP_06874560.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305675509|ref|YP_003867181.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296150867|gb|EFG91752.1| putative permease [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305413753|gb|ADM38872.1| putative permease [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 371

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/344 (15%), Positives = 103/344 (29%), Gaps = 10/344 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    I    + + Y+      P L ALI+     P+            T   +    
Sbjct: 11  RTLFVISITAGSIAAAYYSFPLTYPFLIALILSSVIHPLVDYLDKVTGFPRTINVLGVLA 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      L  L    +     L   +       I     L         +EL      
Sbjct: 71  FFLLAAFGVLTILVAEIVTGTAYLAKTLPPHISTFISYCEKLFTTHIQPLYNELSLLFQE 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              + +    T ++T G          +  I     RF  +  +    +IF ++A FF  
Sbjct: 131 LETNQQASIVTHIQTLGDSAAKNAGLLLSHILEMIPRFFALLPNTAAVLIFSLLATFFMT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   L S+      A  K IS  + K +        ++     +++     L  V
Sbjct: 191 KDWHKLKAMLVSILPGRVTANSKAISSELKKAMTGFIKAQAVLVFITMVIVFIGLSLLKV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +  +  ++ ++P     S     I  L                + + I  +   P
Sbjct: 251 EHAATIAFLIGLVDLLPYLGAGSVFVPWILYLSITGQLPQAIGIGVLYLVVLIQRQLTEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++   I +  L T   L  G +  G LGL  GP ++ +I    
Sbjct: 311 KILSKSIGIDPLATLIALFAGFKLFGFLGLIAGPAVLVIIQAFI 354


>gi|294011289|ref|YP_003544749.1| putative permease [Sphingobium japonicum UT26S]
 gi|292674619|dbj|BAI96137.1| putative permease [Sphingobium japonicum UT26S]
          Length = 384

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 52/329 (15%), Positives = 114/329 (34%), Gaps = 11/329 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  +  +L     FF P+ +AL+I     P       +   S    A+ A ++ + +  
Sbjct: 28  LILALPFALREGAEFFLPLTAALVIAIALVPFLEWMERRSVPSP-LAALTAVIAFLLVAN 86

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L+ +        + L  ++     +  P+  + S +    +  E      + P +   
Sbjct: 87  TALVLIVVPAADWFRLLPERLPKIQNNLAPLIDFYSQLQR--FVDETVQMLATGPVAAAQ 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +      + + F    A    +  +   L      I  FF         + ++S G   
Sbjct: 145 TAAVDAPRSLLQFAATSAPAAIIQMVFALL------IIYFFLAGWTRLRRRTINSRGSFD 198

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++ + V     +  L +  I +  GL +  A WL G+PS +  G I A++  +P
Sbjct: 199 GAMAVARVIQNVVDATSAYVLTIATINLCLGLAVAFALWLIGMPSPLMWGGIVALLNFVP 258

Query: 256 GGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              P+   A+      ++  +++ A            +    + P ++G  + +  L   
Sbjct: 259 YFGPMLAAALLALGGLMVFDDVWRALLPAALQVGFHLVEANVVTPTILGRRLTMNPLLIL 318

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L       G  G  +G  L+ +I  + 
Sbjct: 319 VSLTFWGWVWGTPGALLGVPLLIIIQTVV 347


>gi|294010650|ref|YP_003544110.1| putative permease [Sphingobium japonicum UT26S]
 gi|292673980|dbj|BAI95498.1| putative permease [Sphingobium japonicum UT26S]
          Length = 365

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 98/345 (28%), Gaps = 15/345 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +    W  M I +  L  L      ++ AL++                    +   I  V
Sbjct: 26  KRAGVWFAMGISIALLVLLAQPIMLIMGALVLATMMDGGTRLLGRLMPIGRGWRLAIILV 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   +            + + +   V           + L                 +
Sbjct: 86  AALTFLVYTFYLTGSSLAAQAQAMRVIVETQVNRIGQWLQQLG--------------VTT 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P  L       L    +  + R  +  G   +    S + M++   F   +     + +
Sbjct: 132 MPGDLGPEDFKSLAQQAMSSLGRVTAAVGT-MVGAVTSGVMMLVLAIFIAIEPKIYERGV 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +        +  I+  +   +R    G  I    EG       W  GVP    LG++T
Sbjct: 191 AWMLPMDRRDRFYAIADRMGWTLRRLMFGRLIGMAVEGGGTWLLLWAGGVPMAGLLGILT 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A +P    I    + + +     +      F        +    + P +      L 
Sbjct: 251 GLFAFLPNIGSIISGVLIVLVGFSAGVDAGLYAFGVYLAVQIVDGYLIVPMVAKRATDLA 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                   +      G++GLF+   ++A+I V  +E   A++   
Sbjct: 311 PALVLAAQILFGALFGIMGLFLADPIVAMIKVYLEERSKALEAEN 355


>gi|168702667|ref|ZP_02734944.1| hypothetical protein GobsU_24281 [Gemmata obscuriglobus UQM 2246]
          Length = 357

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 94/346 (27%), Gaps = 20/346 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R            M        +  L     P+L A+++ +   P +S    +    ++ 
Sbjct: 17  RAPDTLRTVAFVLMGAAAGWYLMLQLASVLRPLLVAVLLAYVLMPYHSRLRKQVGTPASI 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                   +       L+ L +     +  L   +    Q    +   L           
Sbjct: 77  A------ILAGGTAAALVGLAFITSASVLALRDDLPQLTQRADDLFVTLER--------- 121

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +H   +       ++    + I               +    + + L F   +G
Sbjct: 122 ---GVSAHAPWVSRNDTRPMRVQATEQIGLVVRLIVAGVATAMIEAGVVGLYLLFLLLEG 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  ++             +++  V   + S        +      +G+  W  GV   
Sbjct: 179 TQLPARVRRAYPKERAEQILQVAGEVNAAVISYLKAKVKSSFFLAAPVGAVLWATGVNFS 238

Query: 242 VALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +   V+T +   IP    +      V    L  G  +          +        + P 
Sbjct: 239 LLWAVLTFLCNFIPYIGTVVAYSLPVGFAFLWFGPSWEPFAAAALLLVWHGASASVIEPM 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++G  + +  L     L       G+ G+F+   L A++ ++ +  
Sbjct: 299 ILGSAVGISPLVILGSLAFWGLLWGVPGMFLAVPLTAVLTIVMEHF 344


>gi|170723630|ref|YP_001751318.1| hypothetical protein PputW619_4469 [Pseudomonas putida W619]
 gi|169761633|gb|ACA74949.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 365

 Score =  110 bits (276), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 134/344 (38%), Gaps = 3/344 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  ++L +    + F   +L ++I+  T +P+Y            + A +  + V+ + 
Sbjct: 24  LVAALVLFAFQVFQPFLELMLWSVILAVTLYPLYQRIKRGSGFKDGYAATLVVLLVLVVL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP+  +       +  LVS +   +      P  +++ P             S   +  
Sbjct: 84  LVPIYLVVMSIGESVDHLVSLIRSDSWSVPVPPDSVANWPLIGPKVHALWLSASENLADV 143

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I        +        A+  G  FL +  +II   + + F  R               
Sbjct: 144 IAQWMPQLKSAGRTALGAAASAGGAFLLFVGAIIISGVIMAFGDRGE---IAAQRIAMRI 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ + 
Sbjct: 201 SGEERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVIKGVPGAGMLAILILMLGIA 260

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              A +    V IY+L       AT +F        + D  L+P L+G  + +P      
Sbjct: 261 QAPATLITLPVIIYVLNVEGFTVATIVFAVYTFVAGLADNVLKPLLLGRGVDVPMPVVLI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G +GG+   G++GLF+GPV++A+  V++ + +      +    +
Sbjct: 321 GALGGMVVKGIIGLFLGPVILAVTYVLFWQWVALQVPEQPAPPA 364


>gi|298484321|ref|ZP_07002483.1| membrane protein [Bacteroides sp. D22]
 gi|298269511|gb|EFI11110.1| membrane protein [Bacteroides sp. D22]
          Length = 360

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 114/346 (32%), Gaps = 12/346 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
           +++  IL+ +  L G   P   A +I +  +P+   F  K            +   +  +
Sbjct: 19  VLVVGILMLVERLSGVLLPFFIAWLIAYMIYPLVKFFQYKLRLKSRIISIFCSLFLITVI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + E+  +   +V    +G       +         +L   +    +  
Sbjct: 79  GVTLFYLLVPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D  +I++    L  
Sbjct: 139 ILATIKDTVPRVWTLLAESLNILFSILASFIILLYVI-----FILLDYEAIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                   L      MG+LG+ I   L  L+   ++  I+  ++NK
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEKNK 359


>gi|149002409|ref|ZP_01827343.1| hypothetical protein CGSSp14BS69_11811 [Streptococcus pneumoniae
           SP14-BS69]
 gi|147759346|gb|EDK66338.1| hypothetical protein CGSSp14BS69_11811 [Streptococcus pneumoniae
           SP14-BS69]
          Length = 347

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 97/295 (32%), Gaps = 6/295 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   +  L     P L    + + + PI +      + +     +I   +++   ++ +
Sbjct: 30  LINPFVSVLNTIMIPFLLGGFLYYLTNPIVTFLNKVCKLNRLLGILITLCTLVWGMVIGV 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           ++L    + ++  L+            +   LS+ P            +        LS 
Sbjct: 90  VYLLPILINQLSSLIISSQTIYSRVQDLIIDLSNYPALQNLD------VEATIQQLNLSY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +  N ++ +           +   L +I   + L +F  DG      L+         
Sbjct: 144 VDILQNILNSVSNSVGSVLSALISTVLILIMTPVFLVYFLLDGHKFLPMLERTILKRDRL 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +   + + +   I     G++I AI  G +    Y + G+   +   + + +  +IP   
Sbjct: 204 HIAGLLKNLNATIARYISGVSIDAIIIGCLAYIGYSIIGLKYALVFAIFSGVANLIPYVG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P       I   I  +        ++  +   +    L P +VG  +K+  +  F
Sbjct: 264 PSIGLIPMIIANIFTDPHRLLIAVIYMLVVQQVDGNILYPRIVGSVMKVHPITIF 318


>gi|298694250|gb|ADI97472.1| probable membrane protein [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 361

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|311233404|gb|ADP86258.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris RCH1]
          Length = 389

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 128/327 (39%), Gaps = 4/327 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   ++ + +   + +P Y    S   E     A++    V+ L ++P++      +
Sbjct: 37  VAPFLHTIILSSVFSASIYPFYRRLTSYLGERPVPAALLVLAGVVILVVIPVVVFVIGLI 96

Query: 87  LEMKELVSKVVLANQH--GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +    VS +        G+      +  P   W  E           ++          
Sbjct: 97  PQAVASVSAITRWLAGHGGLDGLNDAALAPYIAWVRENLPFIDPAQLDVRSSLVQ-ASRA 155

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               + ++ +      L      + +++ +FF  +DG  + Q++  L          +I 
Sbjct: 156 AGQTLLQWGTYVLGNTLLLFGHFLLLLLCMFFMLKDGAWMVQRVRYLSPLRI-DQQDRII 214

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +V RS  +G  ++A+ +GL+ G A    G+P+     ++     +   G  + +  
Sbjct: 215 LELRRVGRSVLVGGLLVAVIQGLLGGVALAAVGIPALFWGTLMAFASLVPVVGTGLVWVP 274

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              YLL+     +A  L LW  I +   D  LRP+ + G + +P    F  ++GGV+  G
Sbjct: 275 AVCYLLLTSQWESALFLSLWCGIVVVGADSILRPYFMRGGVGMPVFFIFLSILGGVKAFG 334

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKE 351
           +LG+  GP++++   V+        ++
Sbjct: 335 MLGILDGPLILSFTVVMLSLYGDEYRD 361


>gi|310819639|ref|YP_003951997.1| hypothetical protein STAUR_2366 [Stigmatella aurantiaca DW4/3-1]
 gi|309392711|gb|ADO70170.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 390

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 116/349 (33%), Gaps = 2/349 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +I+  I + L     FF     A ++      + +    +        A +  V
Sbjct: 8   RRVFVGLILLSIALLLLVASPFFEAFFLAAVLAGAFQGMQTWLTRRLRGRRGLSAGLICV 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   + P+  L  + + E+ + V  V    Q+                          
Sbjct: 68  GFVFALLAPIAALTAFIVSEVIKGVQFVAGIIQNRGLEGLMTYVPGRLQGPVGRLLDRFQ 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +     ++                       + M+IA +F   +G  +   +
Sbjct: 128 AESAGLWQTLQEQVSSQGATAAHTFGGLVAATGSLAFQAVMMLIAFYFLLVEGKQLVAWI 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +S+   L      ++      V RS        A  + L     +++ GVP  V    +T
Sbjct: 188 ESVSP-LRRGQTTELLTEFRGVTRSVLSSTLATAGVQALAALVGFFITGVPVPVFFAAVT 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A+IP          +  LL+  G+   A  L LWG I + + D  ++P L    + +
Sbjct: 247 FFFALIPAIGAAVVCVAAAVLLLATGHPVAALVLALWGIIVVGLADNVVKPLLARRGMNM 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                FF L+GG+   G +GL +GP+++A    + +           ++
Sbjct: 307 HGAIVFFALLGGLAVFGAIGLLLGPLIVAFFLSVVRIYQRDYGRTSARL 355


>gi|158338720|ref|YP_001519897.1| hypothetical protein AM1_5628 [Acaryochloris marina MBIC11017]
 gi|158308961|gb|ABW30578.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 385

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 112/348 (32%), Gaps = 17/348 (4%)

Query: 3   ETMLNPQGIMRWMIMF-IILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISK 54
           + +  P  ++   +   I+ ++ + L             ++ A ++ F      S  + +
Sbjct: 11  QKLSVPSRLLMIGLAAPILALNFWTLASISNYFGVLIGIIVIASLLAFLLNYPVSWCVQR 70

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                   ++I  +  + +     + L      + ++L +++    + G      LS   
Sbjct: 71  -GLRREPASIIVALLAISILFGIGIILIPIAFNQAQQLANRLPDWLESGRQQLILLSQQV 129

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                S     +L                     +   A       LD  + ++  II  
Sbjct: 130 EERGVS----LNLDVLAVQAFDRLQGQLQALTKSLLNIALGTVSSVLDILIDVLVTIILT 185

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+  + G  +   L             +         ++ F+G  +  I    VL   + 
Sbjct: 186 FYLLQHGDELWDSLIDWLPEESQQPVSETL---RSSFQNYFIGQLLFGICMTSVLVPTFL 242

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  VP  +  G+    MA+IP G  +    +   L+   NI+    L     +   I+D 
Sbjct: 243 ILKVPFGLLFGLTIGTMALIPFGGTV-GIILVTCLVTLQNIWLGLKLLAAAVVVQQILDN 301

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + P ++G    L     F  ++ G +  GL+G+ I      +I    
Sbjct: 302 LVAPRILGTMTGLNPAWVFISILIGAKAGGLIGVVIAVPTAVVIKTAL 349


>gi|125973528|ref|YP_001037438.1| hypothetical protein Cthe_1013 [Clostridium thermocellum ATCC
           27405]
 gi|125713753|gb|ABN52245.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
          Length = 360

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 114/341 (33%), Gaps = 2/341 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +   L  + ++ +    I ++    L  +FAP L A  I     P+    + K +    F
Sbjct: 3   KRIKLVIRLVLIFGGTVIGILLGLRLAIYFAPFLIAFAISSMIEPVIRFLMKKLKFRRKF 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+++ +  + +  + LL LF     E+  L S      +        L +   G+    
Sbjct: 63  AALVSLLLGLSMIAILLLMLFSKLYNEITSLSSSQPEFWKEAYQNISNLIN--RGLNIYF 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                ++   S  + S +   ++ +D   +      +      + I   I++ +F   D 
Sbjct: 121 GLPSEVTAQISSMVSSLSNSVSSLVDSFVKGIYNTAISIPQMVIFIFVTILSTYFISSDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   +              I   +   +        I+       L   + + GV   
Sbjct: 181 DRIYDYIKDNVPDALLNKIIDIKDSMFTALFGYVKAQLILMTITFCELSLGFTIIGVKRP 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + LG++ + +   P                           L   + + ++ + + P +V
Sbjct: 241 ILLGLVISFIDAFPVLGTGGVLVPWAIYEFLTKDIRMGVSLLILYVIVLVIRQMIEPKVV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G  I L  L T   +  G++  GL GL +GP++  +   I 
Sbjct: 301 GEQIGLHPLMTLITMYLGMKFFGLPGLILGPIVTLIFKNII 341


>gi|182437581|ref|YP_001825300.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178466097|dbj|BAG20617.1| putative integral membrane protein [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 368

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 97/325 (29%), Gaps = 18/325 (5%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  +  LK    PVL AL+      P++   I++   + +  A +   +++ +       
Sbjct: 33  IWLVVALKTAVTPVLLALLGTALLGPVHRWLIAR-GLNRSLAAGLTCAALVAVVGGAGYI 91

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +    ++V  +  A Q  +                       +        +   
Sbjct: 92  VVTALIDSGDQIVDSLKDAGQWVVDHLD----------------IEGATNVDDLADNAKG 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L                 +      + +  ++  FFF RD         ++         
Sbjct: 136 LVEKFGASAAGGLLSGISLVGSLVATSVLALLLTFFFLRDSDRAVNLAHAVAPRGTGDLV 195

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP- 259
           + + R   + +     G T IA+ + + +     +  VP  V LG +  + A IP     
Sbjct: 196 EAMGRRAFEAVEGFMRGTTFIALIDAVCITVGLLILDVPGAVGLGALVFVGAYIPYLGAF 255

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS     +  L       A            +    L+P +    +++        L  G
Sbjct: 256 ISGAVAVLVALADRGFVIALWALGVVLAVQVLEGHVLQPMIQSRTVQMHPAMIMIALTAG 315

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               GLLG+ +   L A    +  E
Sbjct: 316 ASVAGLLGMLLAVPLCAAAFGVLGE 340


>gi|300864653|ref|ZP_07109510.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337314|emb|CBN54658.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 367

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 111/337 (32%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + L  L+ ++     +  A++       +      +      F ++I+ V ++
Sbjct: 7   LGLVALILSLSVLWEIRQLLLLLFVAVVFAIALNRLVRLLE-RVGIQRGFASLISAVLLI 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L  +    +    + + +EL   V             L           L         
Sbjct: 66  ALIGLFGALVVPPFLSQFRELTQLVPKGLTLLEIWINQLFVWLPTEARQYLP-------- 117

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +          I  +     R    FL+     +F+++    F  +  +  Q    L
Sbjct: 118 --SVGELGNQVQPLISGLANNFFRLFSGFLNLTGGSLFVVVITIMFLLNPQAYRQGFLRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I  +    + +  +G     +  G V G   W+ GV   +A  ++   +
Sbjct: 176 FPSFYRRRADEIFSLCETDLVAWIVGTLFNMLVIGSVSGIILWILGVKLVLANALLAGFL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             +P   PI  T     + +  + + A  + +   +   +    L P ++G  + L    
Sbjct: 236 EAVPNVGPILSTVAPAAIALLDSPWKAVAVVIAYFLIQQLEQFLLVPIVMGQQVSLLPAV 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +      G LGLF+   L+ ++ ++ +E ++ 
Sbjct: 296 TLLAQIFFASFFGFLGLFLALPLVIMVRILLREILVK 332


>gi|256381030|ref|YP_003104690.1| hypothetical protein Amir_7052 [Actinosynnema mirum DSM 43827]
 gi|255925333|gb|ACU40844.1| protein of unknown function UPF0118 [Actinosynnema mirum DSM 43827]
          Length = 402

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 112/348 (32%), Gaps = 14/348 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     ++I+  ++ ++     PV  AL++     P  +    +             V
Sbjct: 27  RFVAVVGALYIVSQAVGYMASVMIPVGIALLLAALLSPAVTQLT-RVGVPRGLATGFVLV 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L F+       + EL ++V  +        +        +   +   + L 
Sbjct: 86  GGLAVVGGVLTFVITEFSNGLPELQNQVTASLSTIRDWLKDGPLHLSELQLQQYVDQLLE 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A        +    ++  +  L FF  DG  I + +
Sbjct: 146 T------------VKANQGEITSGALTTAATVGELLTGLVLALFTLIFFLHDGDGIWRFI 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +      A      R     + S      ++A+ + + +G   W+ GVP  V L  + 
Sbjct: 194 TRIVPRDVRARADLAGRRGFASLVSYVRATAVVAVVDAVGVGIGLWIVGVPLVVPLAALV 253

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     I+     +  L+      A  +       + +    L+P L+G  +KL
Sbjct: 254 FLGAFIPIVGAVITGVVAVLIALVANGPVAAAVVLAILIGVMQLESHVLQPLLLGRAVKL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             L     +  G+   G+ G  +   L+A++    +  +    ++ + 
Sbjct: 314 HPLAVVLAISTGLVVAGIAGALLSVPLLAVLNSGIRSLLSDADKHVDP 361


>gi|218439972|ref|YP_002378301.1| hypothetical protein PCC7424_3031 [Cyanothece sp. PCC 7424]
 gi|218172700|gb|ACK71433.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 377

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 121/338 (35%), Gaps = 17/338 (5%)

Query: 8   PQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + ++ W+++ +        L ++    + +L+A +I F       +   K        A
Sbjct: 10  QKFLITWLLILVTSWLTLRTLSYVGELISILLTAALIAFLLNYAVMAL--KPVLPRPIAA 67

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +   ++   +F +  + L    + + ++L+ ++      G                    
Sbjct: 68  IFVYLAAGLIFGIIGVTLLPPVVNQGRQLIIRLPELVTQGQEQLNTFQAWSVEHNLPFNL 127

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               S   +        + + G+  +            ++ L +I +++  F+   DG  
Sbjct: 128 QLITSDFFTRIQDQIRLIASTGLGLVLGT--------FNWFLDLILILVISFYMLIDGER 179

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + L S      P    +++  + K +R    G  I+ +   + L  A+ L   P  + 
Sbjct: 180 LWESLTSFV---SPQIQDQLTITLEKNLRRFLTGQLILGLFMAICLTIAFLLLQTPFFLL 236

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             V   +M ++P         + + +L   N + A  + +   +   I D  + P ++G 
Sbjct: 237 FAVFIGLMELLPFIGATLGIGIVVIILTFINWWLALQVLIVSVVIQQIKDNIVSPRIMGN 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              LP +  F  L+ G +  G LG+ I   +  ++  +
Sbjct: 297 LTGLPPVIIFIALLLGAKIGGFLGVIIAIPITGVVKGL 334


>gi|169335805|ref|ZP_02862998.1| hypothetical protein ANASTE_02231 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258543|gb|EDS72509.1| hypothetical protein ANASTE_02231 [Anaerofustis stercorihominis DSM
           17244]
          Length = 406

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 105/352 (29%), Gaps = 11/352 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----STFLAVIATVSVM 71
           ++ I       LK      + A  +      +Y+      +          +V   +  +
Sbjct: 49  LVGIWNAFYVPLKPVLIGFIIAFFLYQPVDNLYNRINKHSKFKDGTNRVLSSVAVMIIAI 108

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + +  +    +  +  L++ +             L+  P  +     +   ++   
Sbjct: 109 LIITLIVYIVLPSTITSITSLITSIQDNMGSIESFVTDLTKHPMVVNILNFFNIDITTSS 168

Query: 132 SLKILSETFL--KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            +       L      ++ I        M       ++   I    +   D  ++ +Q+ 
Sbjct: 169 GVNATLVNMLSFAKTWVEGIGTNLVNATMSVGKTVYNVFIAIFLALYMLIDKDTLLRQVS 228

Query: 190 SL----GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +               +  ++  +      G  I ++  G +  +  ++  +     + 
Sbjct: 229 RVSEAVFSERIYGRVSYVLDLMNYMFFKFLSGKAICSLIVGAMGMALAYIFKIKYASLIA 288

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            I  I  MIP   PI          +  G       + L       I    L P ++G  
Sbjct: 289 FIITITNMIPLFGPIFSVIPCSIFAMISGGPIQGIIMVLIIIFIQQIDQNVLAPKILGDV 348

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           + L        ++      G++G+ IG  + A++ ++  + +M  K+  +  
Sbjct: 349 VGLNGFWVIVSIIFCGSLFGVVGMVIGIPIFAVLKILMGQWLMDRKDENKPP 400


>gi|148657814|ref|YP_001278019.1| hypothetical protein RoseRS_3715 [Roseiflexus sp. RS-1]
 gi|148569924|gb|ABQ92069.1| protein of unknown function UPF0118 [Roseiflexus sp. RS-1]
          Length = 412

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 100/349 (28%), Gaps = 22/349 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----------------KEESSTFLA 63
            +V + F          A +I     P+ S   +                 +  S     
Sbjct: 26  AVVVVSFFATPLLLFALAWLIAVVLQPLVSRLTALDLPPITIRARRVPPPPRHLSRMLSV 85

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +++    IV +L        ++  L   V    +        L +      + E +
Sbjct: 86  ALIYLALFAALIVVILSFVPAITQQLTTLTGSVPTTVESIARWIGRLDE------SLERF 139

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    ++  +     T     + + +            +I  ++I  F+   DG  
Sbjct: 140 GFRGDLTAIVQPEAIAQQLTGFGSAMLQQSLGIAGSIATVLFNIFLVLILSFYITLDGPR 199

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +   ++    +      +  ++ +V         + ++  G+       + G+     
Sbjct: 200 MGKSFVAVLPQSWHDEVDNLFAVIDRVFGGFMRAQFVNSLLYGVANAIVMAMFGLGDIAL 259

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             V+ AI+  IP               I         L L   I   +    + P LVG 
Sbjct: 260 ASVVAAILVFIPLVGGFFALIPPALFAILFAPDRLGWLLLTLLIVQQVQFNIVMPRLVGQ 319

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            I L  L  F  L+ G    G  G+  G  +  +IA I +      +  
Sbjct: 320 AIGLHPLLVFAALLLGGTVAGGWGVLFGIPVAGVIASITQFFYERARRT 368


>gi|254476937|ref|ZP_05090323.1| conserved domain protein, putative [Ruegeria sp. R11]
 gi|214031180|gb|EEB72015.1| conserved domain protein, putative [Ruegeria sp. R11]
          Length = 375

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 103/317 (32%), Gaps = 11/317 (3%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           + F  PV+ A ++             K    +   A I    V  L     +        
Sbjct: 48  RAFAVPVILAFLLSLVFSGPCRWLRRKGIPEAVTAAAIVLSLVAGLTASTAILAIPA--- 104

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                   +  A +    V R L DI G   A     + +    +             I+
Sbjct: 105 -----SEWIEDAPRVAQQVERKLKDISGVAAAVAEADRRIEEATTGAADGAEDPVEVVIE 159

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWKKISRI 206
                 +   +         +F++I  FF    G    ++L S+           +I+  
Sbjct: 160 DTSGPLTTVAVGAPMIVAQTLFVLILTFFMLASGNLFYERLVSVLPRFADKKRAIQIAYD 219

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V + +    L +T +  G G+++G +  L G+P+ +A G++   M  +P    +    VS
Sbjct: 220 VEREVSRYLLAITCVNAGLGVIVGVSLGLLGMPNPLAFGLLAFGMNFVPFVGAVIGVIVS 279

Query: 267 IYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             + +        A  +         I  + + P+LVG  + L  +     +        
Sbjct: 280 FGVALVSLPTLFDALTVAGIYLALTVIEGQVVTPWLVGRHLSLNTVVILISVAFWAWLWS 339

Query: 325 LLGLFIGPVLMALIAVI 341
           ++G+ +   L+    V+
Sbjct: 340 VMGMIMAVPLLVTFRVL 356


>gi|257425062|ref|ZP_05601488.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257427726|ref|ZP_05604124.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257430361|ref|ZP_05606743.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433065|ref|ZP_05609423.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435962|ref|ZP_05612009.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282913785|ref|ZP_06321572.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282923818|ref|ZP_06331494.1| hypothetical protein SARG_01359 [Staphylococcus aureus subsp.
           aureus C101]
 gi|293500823|ref|ZP_06666674.1| hypothetical protein SCAG_01353 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293509778|ref|ZP_06668487.1| hypothetical protein SAZG_01679 [Staphylococcus aureus subsp.
           aureus M809]
 gi|293526364|ref|ZP_06671049.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257272038|gb|EEV04170.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274567|gb|EEV06054.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278489|gb|EEV09108.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281158|gb|EEV11295.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257284244|gb|EEV14364.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313790|gb|EFB44182.1| hypothetical protein SARG_01359 [Staphylococcus aureus subsp.
           aureus C101]
 gi|282321853|gb|EFB52177.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|290920436|gb|EFD97499.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095828|gb|EFE26089.1| hypothetical protein SCAG_01353 [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291467228|gb|EFF09745.1| hypothetical protein SAZG_01679 [Staphylococcus aureus subsp.
           aureus M809]
          Length = 361

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKETEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|253997933|ref|YP_003049996.1| hypothetical protein Msip34_0220 [Methylovorus sp. SIP3-4]
 gi|313199998|ref|YP_004038656.1| hypothetical protein MPQ_0231 [Methylovorus sp. MP688]
 gi|253984612|gb|ACT49469.1| protein of unknown function UPF0118 [Methylovorus sp. SIP3-4]
 gi|312439314|gb|ADQ83420.1| conserved hypothetical protein [Methylovorus sp. MP688]
          Length = 359

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 114/327 (34%), Gaps = 11/327 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKE----ESSTFLAVIATVSVMCLFIVPLLFLFYY 84
              AP L A I  +   P+       +        T  +++  + ++ +  + LL +   
Sbjct: 30  PIMAPFLIAAIFAYICNPLVDRLAQVRLWQFTLGRTVASLLVMLMLIAIICILLLIVIPM 89

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              E   ++ K+                 P  +    +     +      I S     ++
Sbjct: 90  MQKEFMLIMEKLPTYITGLRTRIE-----PWLLQHFGVAIDIDAAKVQQVISSNWKSASD 144

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +       S  G+    +  +++ + I LF+  RD   I  + D L    + A   +I+
Sbjct: 145 FVGKFLLALSDHGLALFAWLANLVLIPIVLFYLLRDWHDILNRFDQLLPRRWYAKTVEIA 204

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           R V  ++     G   + +       +  WL+G+   + +G+I  ++  +P     +   
Sbjct: 205 REVDMMLAEFLRGQLSVMLLMSAFYATGLWLSGLELALPIGLIAGLLGFVPYLGIGTGML 264

Query: 265 VSIYLLIKGNIFNATCL--FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           ++    +      A  +       I   +    L P+LVG  I L  +   F L+ G + 
Sbjct: 265 LAALASVLQFTTFAQYVPVIAVFGIGQMLESMWLTPWLVGDRIGLHPVMVIFALLAGGQL 324

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAI 349
            G  G+ +   + A IAV  + +  A 
Sbjct: 325 FGFTGILLALPVSAAIAVGLRHAKRAY 351


>gi|56963750|ref|YP_175481.1| transporter [Bacillus clausii KSM-K16]
 gi|56909993|dbj|BAD64520.1| transporter [Bacillus clausii KSM-K16]
          Length = 378

 Score =  110 bits (275), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 107/343 (31%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   + +   L     +     P   A +  +   P+   F  K   S  F ++   +
Sbjct: 14  RTIAIVVFLIGSLWVFAKVFSLTYPFWFAALFAWMLQPVARFFQQKLRFSRGFASLFGLL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP----------VPRWLSDIPGGMW 118
             + +    L  L +     +++   +V    + G             P W   +     
Sbjct: 74  GGILVISAILTGLVFLIYFSLRQFFEQVPTWIEEGSEKMQIFFNETVWPYWQQVLGLFDT 133

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                   LS               +    +  F +   +   ++ ++ +F+I++++F  
Sbjct: 134 IDVGTHNVLSEGIDQLGTVLGNFLGDIGQGVVDFLTTALLGLPNFLVAFLFIILSIYFMG 193

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +         D           K+  + + + +        I+      ++     +  +
Sbjct: 194 KSWSYYQDVYDRHVPLRLRKKGKEFVQAIRRRLFGFLRAQFILMFVTACIVFVGLLIIQI 253

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +   L ++  I  ++P     +        L      +         I + I+ + L P
Sbjct: 254 DNAWMLAIVVGIAELLPYLGTGTILIPWFIYLFITGDVSGGFGIAILYIIVVIIRQLLEP 313

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   + L  +     L  G+R  G  GLF+GP ++  I ++
Sbjct: 314 KVLSSHMNLNPIAVLISLFAGLRLFGAFGLFLGPAILVFIVIL 356


>gi|85059408|ref|YP_455110.1| putative inner membrane protein [Sodalis glossinidius str.
           'morsitans']
 gi|84779928|dbj|BAE74705.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 366

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 126/335 (37%), Gaps = 6/335 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            I  + L   + ++ F      A ++   +WP+            +   V+ T+ ++ LF
Sbjct: 19  FIALMTLSCFWVVQPFILGFSWASMVVIATWPLLIKVQHLLWGRRSLAVVVMTLLLLLLF 78

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWTKHLSHPQSL 133
           ++P+  L    +     LV+     ++  +P   WL DIP  G      W   +S   + 
Sbjct: 79  VLPVSILVSSIVDNSAPLVAWATQPDRLTLPALAWLQDIPMVGRKLYSAWQSLISGGSAP 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +            ++    +  G       L    MI+     Y  G  +   +     
Sbjct: 139 LMSKIQPYIGKAASWLLGQVANLGS----LLLHCGLMILFSVLLYLRGERVGMAVRHFAI 194

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L          +  + IR+  +G+ + AI + ++ G    + G+P    L V   ++ +
Sbjct: 195 RLGAERGDASVLLAAQAIRAVAMGVVLTAIVQSVLGGVGLAITGIPLATVLTVTMFVLCI 254

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              G         I+L   G+    T L +W  +   + D  LRP  +     LP L   
Sbjct: 255 AQLGPLPVLIPAMIWLYWSGDTTWGTILLVWSCVVATL-DNILRPIFIHMGADLPMLLVL 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            G++GG+   G++GLFIGPV++A+   +    +  
Sbjct: 314 CGVLGGLLAFGMIGLFIGPVVLAVSWRLVFAWMQE 348


>gi|237718220|ref|ZP_04548701.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229452404|gb|EEO58195.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 360

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/346 (15%), Positives = 114/346 (32%), Gaps = 12/346 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCL 73
           +++  IL+ +  L G   P   A +I +  +P+   F  K            +   +  +
Sbjct: 19  VLVVGILMLVERLSGVLLPFFIAWLIAYMVYPLVKFFQYKLRLKSRIISIFCSLFLITVI 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +     L    + E+  +   +V    +G       +         +L   +    +  
Sbjct: 79  GVTLFYLLVPPMISEIGRMNDLLVTYLTNGAGNNVPKNLSEFIHENIDLQALNRVLSEEN 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            + +           +    +    I   + + +  +     F   D  +I++    L  
Sbjct: 139 ILAAIKDTVPRVWTLLAESLNILFSILASFIILLYVI-----FILLDYEAIAEGWLHLLP 193

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           + +  +   +   V   +   F G  ++A   G++    + +   P  +ALG+    + M
Sbjct: 194 NKYRTFASNLVHDVQDGMNRYFRGQALVAFCVGILFSIGFLIIDFPMAIALGLFIGALNM 253

Query: 254 IPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +P    I F    +  +       +       C     AI   I D  L P ++G    L
Sbjct: 254 VPYLQIIGFLPTILLAILKAADTGQNFWIIIACALAVFAIVQIIQDTFLVPKIMGKITGL 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                   L      MG+LG+ I   L  L+   ++  I+  ++NK
Sbjct: 314 NPAIILLSLSIWGSLMGMLGMIIALPLTTLMLSYYQRFIINKEKNK 359


>gi|49485787|ref|YP_043008.1| hypothetical protein SAS0881 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|49244230|emb|CAG42656.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 361

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 109/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +S   K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNSLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|157826034|ref|YP_001493754.1| hypothetical protein A1C_04960 [Rickettsia akari str. Hartford]
 gi|157799992|gb|ABV75246.1| hypothetical protein A1C_04960 [Rickettsia akari str. Hartford]
          Length = 351

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/350 (15%), Positives = 122/350 (34%), Gaps = 7/350 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N   I   + + + +     +     P   A II +   P      SK + S+ F + I
Sbjct: 1   MNITAIFWLVFLGLFISGFMLISDAVKPFFIAFIISYLLQPAIGLIASKFKISNKFASSI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +F + L  L      ++   ++ +     +          +P  M    L   
Sbjct: 61  IYLIFLSMFFLSLTILVPIIYGQIFTFINNIPKYKNYLQAEI-----LPPIMAKIYLIEP 115

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++      + +        +  I     R+ +I ++  +  + + I LF+F RD   I 
Sbjct: 116 DIADKIKNSLTNFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWAKII 175

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + SL          +I   +  ++ +   G   I +        A+ + G+   + LG
Sbjct: 176 TNMKSLLPIKTRPKILEILSAINNLLSAYIRGQLNICLLLSTYYSIAFTIIGIDLAILLG 235

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T  + +IP         +++ +  L  G       + +   +        L P ++G 
Sbjct: 236 IVTGFLVIIPFLGTFISFLLTLIISYLTFGINTKLLYIMIIYLVGNICESYILTPKIIGD 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            I L  L   F +       G++G+F    +  +  ++    I   K +K
Sbjct: 296 KIGLHPLWIIFSIFACGSLFGIIGIFFAIPIAGITKILLLNLIKFYKSSK 345


>gi|317063451|ref|ZP_07927936.1| permease [Fusobacterium ulcerans ATCC 49185]
 gi|313689127|gb|EFS25962.1| permease [Fusobacterium ulcerans ATCC 49185]
          Length = 333

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 103/317 (32%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A+ I     P+ S    + +        I  V V+      +  +        KEL 
Sbjct: 1   MIYAVFISIFLEPLVSKIEQRFKLERWVAVAIVIVLVIIGVAGFVGLILPQLGKSFKELY 60

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           +K+    +    + + + D         +  K +       +             +    
Sbjct: 61  NKLPHMQEQLGSLIKRVLDYLKEKELLVIGEKQIEDNIISLLKRNIGNLQEFGISVLLNI 120

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             + +    + +     +  L         I   L  +       Y          V+ +
Sbjct: 121 VWWTIALSKFFIGFFLAVFILLDKEYFIRFIKNILAIIFGKEKGMYLSDFLNQSRNVLLN 180

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  I +   G++     +LAGVP  +   ++  +  MIP    I   A++I+L+I  
Sbjct: 181 YVWGRIIASAFVGVITFVVLFLAGVPYALLSSLMIGMGNMIPYVGSIVAGAIAIFLVILA 240

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                  LFL   I   +    + P +V   + +        ++ G   MG +G+F G  
Sbjct: 241 EPSKIGYLFLAMIIGQTVDGWIVGPKIVSETVGMSTFWVIVAVLIGGSVMGPMGMFFGVP 300

Query: 334 LMALIAVIWKESIMAIK 350
              +I +I++  +  I+
Sbjct: 301 AFGIIKLIYETQLKKIE 317


>gi|313836726|gb|EFS74440.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314929868|gb|EFS93699.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314972295|gb|EFT16392.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
          Length = 404

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 102/332 (30%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 63  VLLTVAAAWLGLSFLHELSSVIAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATAAGTT 121

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    +  + +     + +L S +    +    +  W + +                
Sbjct: 122 VIVVLAAGVAGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQEVI--------- 172

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +            II ++  + F   D   +  +L 
Sbjct: 173 --------TDKLKKIDPQQVMSVITSVASDTTSIVTMIIVILTGMIFMVMDTPQMHDRLR 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 225 MA--GNRKPDVVLALESFSSGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 282

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  +   F++   ++P   G  + L 
Sbjct: 283 LTNYIPNIGFIVGVIPPALLALFKDGWVAAVAVVVSYSALNFVIQSIIQPKFAGDAVGLT 342

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 343 PTMSFVSLLLWGWVFGALGTLIALPCSLLVKA 374


>gi|258423517|ref|ZP_05686407.1| conserved hypothetical protein [Staphylococcus aureus A9635]
 gi|257846218|gb|EEV70242.1| conserved hypothetical protein [Staphylococcus aureus A9635]
          Length = 361

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGVFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +S+
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSD 358


>gi|77164880|ref|YP_343405.1| hypothetical protein Noc_1381 [Nitrosococcus oceani ATCC 19707]
 gi|254434105|ref|ZP_05047613.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883194|gb|ABA57875.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207090438|gb|EDZ67709.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 384

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 106/335 (31%), Gaps = 19/335 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
            ++ L + +    P++ ++++ ++  PI S+    K        ++  +     FI  L 
Sbjct: 33  TILMLQWTQAVLVPLVFSILVSYSLDPIVSALERLKVPRWLGATLLVML-----FIGLLG 87

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----------IPGGMWASELWTKHLSH 129
           +  Y    +   L+ K+  A Q      +                      E       +
Sbjct: 88  YGSYTLRDQAMVLLDKIPQAVQTLRHSMQVKPADSREGVIKKVQEAAEKIQEATKSADDN 147

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K              +  +     +  L +   +  +++ +  F   G +  ++L 
Sbjct: 148 ATSSKPGVMKVEIVEPGLKLGEYVWWGSLGVLAFLAQLATVVMLVLLFLVSGDTYKRKLV 207

Query: 190 SLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            +            +I   +   IR     + I  +  GL    A+   G+      G+I
Sbjct: 208 KITGPTLSEKKVTVQILDDINMQIRRHLFVLVISGVFVGLATWGAFLWIGLEQAALWGLI 267

Query: 248 TAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             + + +P   P    A +  +     G I     +     +   I    L P+L     
Sbjct: 268 AGVASTVPYLGPAVVFAATTIVALVQFGTITMGLGVGAASLLITGIQGNWLTPWLTSRTS 327

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  +  F GL+      G +GL +   ++ +I V
Sbjct: 328 SINAVVVFIGLLFWGWLWGPIGLIVATPILIIIKV 362


>gi|325189672|emb|CCA24156.1| transmembrane protein putative [Albugo laibachii Nc14]
          Length = 725

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/372 (11%), Positives = 103/372 (27%), Gaps = 57/372 (15%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS----------- 49
           M+   L  +G +    +      L + +    P+  A+ + +   P+             
Sbjct: 72  MKRMALELKGAVLATGLAACCYLLSWFQTVLLPLFLAIFLMYLVDPLVEVIDVSPRYFLC 131

Query: 50  ------SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
                     +   S       A++  +         L Y  +L +  L           
Sbjct: 132 ICTQRGRLARRT--SRGCSRAFASLCAVVTVCFFFALLGYITVLSVYAL----------- 178

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                                   +   S ++     + T   D + R A  F    +D 
Sbjct: 179 ---------DMTPYQDGYNHLVAKAERVSGRVGVPLNITTTLHDNVERLARIFLTETMDI 229

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              +   II L +F       S                 +   + + I+        +++
Sbjct: 230 LSFVFVTIIYLTYFLCTRTRASDA-------------GGVWSKIDRDIQRFVTLKCFLSL 276

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-----GNIFNA 278
              L++   Y    V   +  G++T I+  IP    +  + + + +++       N    
Sbjct: 277 FVALLVTVVYVWLNVGLAILWGILTFILNWIPNVGAMVASLIPVLIIVITPSSVMNTMEK 336

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               L        V   + P + G  +++  +     L       G++G+ +   L A  
Sbjct: 337 FLAVLLPMCLHAFVGNFIEPRVFGKKLEMDPVIVILSLSTWGLLWGVVGMILSVPLTAAF 396

Query: 339 AVIWKESIMAIK 350
            ++     +  +
Sbjct: 397 KIMLSHLKLWPE 408


>gi|332182085|gb|AEE17773.1| protein of unknown function UPF0118 [Treponema brennaborense DSM
           12168]
          Length = 407

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 57/368 (15%), Positives = 130/368 (35%), Gaps = 10/368 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE---- 56
           M          M  +   + ++ L  L  FF  +L  +++     P++   +S+      
Sbjct: 39  MDNKRTLQTVFMFALFALLFVLILGMLHPFFTVILWTILLYIILNPLHHRCVSRLNAQKK 98

Query: 57  ---ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
                   LA + +V  + + I PL+ +    + +M   +  V                 
Sbjct: 99  LYEFRRHVLAGVFSVGTLIIIIGPLITIATLLVQQMLSFLHAVEDFINRNPDFLTSSEIG 158

Query: 114 PGGM-WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
              + +        +    +    +           I    +       ++ +S++F+  
Sbjct: 159 KSVLGFIDRFNLDFIDLNSTDLRTNLIKFIQQYSSRIVSTGATVLSSTGNFLVSVLFVTF 218

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           AL+F + DG  ++  L      + P Y   + +   ++ R  F G  ++A+ +G      
Sbjct: 219 ALYFCFLDGRYLASLLAQAIP-INPQYMSALMKKFAEITRHLFSGYILVALYQGFAAFII 277

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFI 291
             +  V   +   VI    + IP             ++    ++       +   I +  
Sbjct: 278 MSIFRVQGSLLFAVILMFASFIPLFGAALVWLPMGIVICATDSLLKGILFLVLCGICVSF 337

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +D  LRP  +   IK+  L  FF ++GG++  G+ GL +GP+++ L   +    + +   
Sbjct: 338 LDNFLRPMFLKDRIKVHPLVIFFAILGGLKVFGMNGLLLGPMIIILFFTVLDLLVNSEAA 397

Query: 352 NKEKISSN 359
              +I+ +
Sbjct: 398 VPTEITDS 405


>gi|172039635|ref|YP_001806136.1| hypothetical protein cce_4722 [Cyanothece sp. ATCC 51142]
 gi|171701089|gb|ACB54070.1| hypothetical protein cce_4722 [Cyanothece sp. ATCC 51142]
          Length = 365

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 124/343 (36%), Gaps = 17/343 (4%)

Query: 6   LNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              + ++ W+++ +        L ++ G  + +L+A +I F           K     + 
Sbjct: 7   RPQKILVTWLLILVTGWLTIKTLSYIGGLISLILTASLIAFLLNYPVRGL--KTVLPRSL 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +  + + I   + L    + + K+L++K+    + G      L  +        
Sbjct: 65  AATLVYLGAIFIVIFLAITLLPPVVNQGKQLITKLPSLLEEGEQQLVTLQALINTKNLPI 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S   +        + + G   +            ++ + +I +I+  F+   DG
Sbjct: 125 DLEFLASQILTKIEAQTKDIASTGFGLVLGT--------FNWFIDLIVVIVVSFYMLLDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + + +            ++  + K ++    G  I+ +   + L  A+ L G+P  
Sbjct: 177 EKIWKSIINFFSPQIRGV---LTTTLEKNLQRFLTGQLILGLFMAVSLTIAFRLLGIPFF 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   V   IM ++P             +L   N + A  + +   I   + D  + P ++
Sbjct: 234 LLFAVFIGIMEILPFIGATLGIGTVTIILTFINWWLAVQVLVTAVIIQQVKDNLIAPRIM 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G    LP +  F  L+ G +  GLLG+ +   L  +I  I + 
Sbjct: 294 GNLTGLPPVMIFIALLLGAKIGGLLGVILAIPLTGVIKGITEI 336


>gi|90407160|ref|ZP_01215348.1| hypothetical protein PCNPT3_03016 [Psychromonas sp. CNPT3]
 gi|90311736|gb|EAS39833.1| hypothetical protein PCNPT3_03016 [Psychromonas sp. CNPT3]
          Length = 360

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 111/364 (30%), Gaps = 27/364 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+      + ++    + I L  +        P L AL I     P  +     +     
Sbjct: 1   MQNVSTLARSLLCCASLVIALAGIKIAAPIVVPFLLALFIAIICNPAVNFLERYRIPR-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                A   ++       + L       + E    +            W     G     
Sbjct: 59  ---GFAITLIIGFIFFLFIGLGGVIGSSVNEFRQALPSYEAQLSTQLSWAVQWMGEHHIE 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +  S+                   +    +     F     +I  +++ + F   +
Sbjct: 116 INKFEIQSYFN--------------PAKVMTLVTATLSGFSSMLGNIFLLLLTVVFMLVE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   S++L    +       +K  +    ++       T+I++  GL++G   W+  V  
Sbjct: 162 GEGFSKKLHIAFDDPIGK--EKRMQRFLNMVNRYMAIKTLISLATGLIIGFVLWIMNVDF 219

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V   ++  ++  IP    I     ++ L  ++  + +A+ +         I+   + P 
Sbjct: 220 FVLWALLVFLLNYIPNIGSILAAVPTVILTFLQLGMGSASIVIGLFVAVNMIMGNMVEPK 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK-----ESIMAIKENKE 354
            +G  + L  L  F  L+     +G++G+ +   L  +  +  +          +  + E
Sbjct: 280 YMGRSLGLSTLVVFLSLIFWGWLLGMVGMLLSVPLTMICKIALENSKEGAWFAILLSSDE 339

Query: 355 KISS 358
           +I  
Sbjct: 340 EIDE 343


>gi|297624176|ref|YP_003705610.1| hypothetical protein Trad_1953 [Truepera radiovictrix DSM 17093]
 gi|297165356|gb|ADI15067.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 373

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 87/302 (28%), Gaps = 12/302 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +  + L+ L   F      L+ G       S F         +   +  +    +F 
Sbjct: 35  LTVLGALLLWRLADIFLLAFIGLLFGVFLDAASSLFRRYLSLPRGWSLALTLLLFAGVFA 94

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + L  L      +   L   +    Q+                      +          
Sbjct: 95  LALSLLGPTLAAQAVALFEGLPRFLQNLEAELGGTPWYDSLRALLPAPDEGADR------ 148

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     +  +    ++            +F+     F         + L SL    
Sbjct: 149 ------LGQMLSQVLAQTTQLITSLTTLVFYGVFIFFVGLFLAIHPRYYQEGLVSLWPPP 202

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                ++++  +   +R+  +G  I  +  G V G   W+ GVP    LGVI A+   IP
Sbjct: 203 QRRRAREVTSKLGYTLRAWLVGQLISMLLIGTVTGVGLWVLGVPLAFVLGVIAALFEFIP 262

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P+     ++ L    +   A  + L+  +   +    + P +    + LP +    G
Sbjct: 263 NIGPVLAAVPAVLLAFAQSPLLALYVALFYLVIQQLEGNVIHPLIQRRAVDLPPVLGIIG 322

Query: 316 LV 317
           + 
Sbjct: 323 VF 324


>gi|134299818|ref|YP_001113314.1| hypothetical protein Dred_1971 [Desulfotomaculum reducens MI-1]
 gi|134052518|gb|ABO50489.1| protein of unknown function UPF0118 [Desulfotomaculum reducens
           MI-1]
          Length = 362

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 2/328 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            + F+     P + A+ I F   P+     +K   S      ++   ++  F+  +  L 
Sbjct: 35  GVSFIIPLIVPFVLAIFISFLLEPMVYILQNKIHFSRGPAVALSMFLLIIFFVTIISLLL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + E+  L   +    Q           +P            +S+       S     
Sbjct: 95  LRLITELINLSKSIPFIIQEIQYWVEK--SLPKLQQLYGELPPSVSNYIQESFRSIADTL 152

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N +                +   II   +A +F  +D  S++          +      
Sbjct: 153 QNLLAAALDTLYSTFSAVPGFITIIIVSFLATYFISKDRRSLALHWIKFLPAPYGERSLH 212

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + V     S      I+      +  S  ++ G    + +G++     +IP   P + 
Sbjct: 213 VIKEVFNAFISYIKAQGILVSISTFISISGLYIIGADYALTMGLLIGFFDIIPVLGPGTV 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I   I           L   I + +  + L   +V   + L  L T   L  G R 
Sbjct: 273 ILPWIVWSIISGEIAFGLKLLVLYIVILVARQLLETKVVADNLGLHPLATLVALFFGFRI 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +G +G+ +GP+L+  I  I K  I + +
Sbjct: 333 LGFVGMIVGPILLIAIQAIVKAGIQSPR 360


>gi|313764012|gb|EFS35376.1| conserved hypothetical protein [Propionibacterium acnes HL013PA1]
 gi|313771457|gb|EFS37423.1| conserved hypothetical protein [Propionibacterium acnes HL074PA1]
 gi|313802245|gb|EFS43471.1| conserved hypothetical protein [Propionibacterium acnes HL110PA2]
 gi|313808117|gb|EFS46591.1| conserved hypothetical protein [Propionibacterium acnes HL087PA2]
 gi|313811416|gb|EFS49130.1| conserved hypothetical protein [Propionibacterium acnes HL083PA1]
 gi|313812599|gb|EFS50313.1| conserved hypothetical protein [Propionibacterium acnes HL025PA1]
 gi|313814861|gb|EFS52575.1| conserved hypothetical protein [Propionibacterium acnes HL059PA1]
 gi|313818884|gb|EFS56598.1| conserved hypothetical protein [Propionibacterium acnes HL046PA2]
 gi|313820711|gb|EFS58425.1| conserved hypothetical protein [Propionibacterium acnes HL036PA1]
 gi|313822522|gb|EFS60236.1| conserved hypothetical protein [Propionibacterium acnes HL036PA2]
 gi|313825682|gb|EFS63396.1| conserved hypothetical protein [Propionibacterium acnes HL063PA1]
 gi|313828024|gb|EFS65738.1| conserved hypothetical protein [Propionibacterium acnes HL063PA2]
 gi|313830829|gb|EFS68543.1| conserved hypothetical protein [Propionibacterium acnes HL007PA1]
 gi|313833257|gb|EFS70971.1| conserved hypothetical protein [Propionibacterium acnes HL056PA1]
 gi|313839013|gb|EFS76727.1| conserved hypothetical protein [Propionibacterium acnes HL086PA1]
 gi|314915044|gb|EFS78875.1| conserved hypothetical protein [Propionibacterium acnes HL005PA4]
 gi|314918624|gb|EFS82455.1| conserved hypothetical protein [Propionibacterium acnes HL050PA1]
 gi|314920433|gb|EFS84264.1| conserved hypothetical protein [Propionibacterium acnes HL050PA3]
 gi|314925625|gb|EFS89456.1| conserved hypothetical protein [Propionibacterium acnes HL036PA3]
 gi|314932107|gb|EFS95938.1| conserved hypothetical protein [Propionibacterium acnes HL067PA1]
 gi|314954627|gb|EFS99033.1| conserved hypothetical protein [Propionibacterium acnes HL027PA1]
 gi|314958574|gb|EFT02676.1| conserved hypothetical protein [Propionibacterium acnes HL002PA1]
 gi|314959822|gb|EFT03924.1| conserved hypothetical protein [Propionibacterium acnes HL002PA2]
 gi|314962395|gb|EFT06496.1| conserved hypothetical protein [Propionibacterium acnes HL082PA1]
 gi|314973717|gb|EFT17813.1| conserved hypothetical protein [Propionibacterium acnes HL053PA1]
 gi|314976364|gb|EFT20459.1| conserved hypothetical protein [Propionibacterium acnes HL045PA1]
 gi|314979205|gb|EFT23299.1| conserved hypothetical protein [Propionibacterium acnes HL072PA2]
 gi|314983353|gb|EFT27445.1| conserved hypothetical protein [Propionibacterium acnes HL005PA1]
 gi|314989501|gb|EFT33592.1| conserved hypothetical protein [Propionibacterium acnes HL005PA3]
 gi|315084107|gb|EFT56083.1| conserved hypothetical protein [Propionibacterium acnes HL027PA2]
 gi|315085309|gb|EFT57285.1| conserved hypothetical protein [Propionibacterium acnes HL002PA3]
 gi|315089076|gb|EFT61052.1| conserved hypothetical protein [Propionibacterium acnes HL072PA1]
 gi|315096492|gb|EFT68468.1| conserved hypothetical protein [Propionibacterium acnes HL038PA1]
 gi|315098899|gb|EFT70875.1| conserved hypothetical protein [Propionibacterium acnes HL059PA2]
 gi|315100861|gb|EFT72837.1| conserved hypothetical protein [Propionibacterium acnes HL046PA1]
 gi|315108079|gb|EFT80055.1| conserved hypothetical protein [Propionibacterium acnes HL030PA2]
 gi|327326742|gb|EGE68525.1| membrane spanning protein [Propionibacterium acnes HL096PA2]
 gi|327443057|gb|EGE89711.1| hypothetical protein HMPREF9570_02563 [Propionibacterium acnes
           HL043PA1]
 gi|327445180|gb|EGE91834.1| hypothetical protein HMPREF9571_02166 [Propionibacterium acnes
           HL043PA2]
 gi|327446899|gb|EGE93553.1| hypothetical protein HMPREF9568_00856 [Propionibacterium acnes
           HL013PA2]
 gi|327450161|gb|EGE96815.1| hypothetical protein HMPREF9581_02609 [Propionibacterium acnes
           HL087PA3]
 gi|327455281|gb|EGF01936.1| hypothetical protein HMPREF9586_01317 [Propionibacterium acnes
           HL083PA2]
 gi|328752827|gb|EGF66443.1| hypothetical protein HMPREF9579_02370 [Propionibacterium acnes
           HL087PA1]
 gi|328759249|gb|EGF72865.1| hypothetical protein HMPREF9588_00093 [Propionibacterium acnes
           HL025PA2]
 gi|328760263|gb|EGF73836.1| membrane spanning protein [Propionibacterium acnes HL099PA1]
          Length = 386

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 118/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|314968334|gb|EFT12433.1| conserved hypothetical protein [Propionibacterium acnes HL037PA1]
          Length = 386

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 118/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGHIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|304437787|ref|ZP_07397737.1| possible permease [Selenomonas sp. oral taxon 149 str. 67H29BP]
 gi|304369235|gb|EFM22910.1| possible permease [Selenomonas sp. oral taxon 149 str. 67H29BP]
          Length = 342

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 120/352 (34%), Gaps = 18/352 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+  ++   +L S +F + F   V  +L++     P+  +   ++            
Sbjct: 7   RTSIILAIVFAALLSSFWFFQDFAFIVFLSLLLQILLQPVVDAMERRRIPR--------- 57

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                     +       +  +  LV   VL+      + R+++++P      +      
Sbjct: 58  ---------GIASAGAILLFLLLVLVLLSVLSRSVVPSLQRFVTELPSIGQGLQQMPLLT 108

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 ++ S      +    + R +  F +  +   +  + +I   F+  +DG  I + 
Sbjct: 109 EMDLQQEMESFLDKLRSVGAELLRASLSFLLAAVGKIMDFVIIIFVSFYLLKDGKMIKRW 168

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L  +        +   +   +R       ++ I  GL++   + L G+P      ++
Sbjct: 169 LAGLFPYGSRGRVLSLFDRLLHALRIYVCSQLVMCIITGLIVFLYFVLMGLPYGSVFALL 228

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + I   +P   P + +A+ I +             L+      I    + P LVG  + L
Sbjct: 229 SGISEFVPVLGPTAASALGIIMTASAAHDLTVQTALFYLALTQINHNIVYPALVGKSLHL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             +    G+V G   +G  G+F+    M ++ ++  +     K    +    
Sbjct: 289 HPVAVILGVVFGGEILGAAGMFLAVPFMVIVKIVVTDIYHEQKTETPEGEEE 340


>gi|256845707|ref|ZP_05551165.1| permease [Fusobacterium sp. 3_1_36A2]
 gi|294785046|ref|ZP_06750334.1| permease [Fusobacterium sp. 3_1_27]
 gi|256719266|gb|EEU32821.1| permease [Fusobacterium sp. 3_1_36A2]
 gi|294486760|gb|EFG34122.1| permease [Fusobacterium sp. 3_1_27]
          Length = 362

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 115/323 (35%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  ++ ++ I     PI      K + +      ++   V+ +F +  L +    + 
Sbjct: 37  KDYFMTIIMSIFIAILLEPIVKYLKKKSKINDILAISLSIAFVVLIFTILSLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L +     ++    + + L D         +    ++   +  I +        + 
Sbjct: 97  SLKVLNNIYPYISEKATTMGKNLVDYLAEKNIYTVNMDEVNSYFTNFIANNVTNIRKIVS 156

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      + + F +  L+ +   + L        ++   +  +       Y     ++ 
Sbjct: 157 ALFGSLVDWTIGFTNLFLAFVLAFLILLDKKHLTKTLENIIIIIFGVKNTPYIMNKLKLS 216

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            ++  +   G  I++   GL +     + G P      V+  +  MIP    I    ++ 
Sbjct: 217 KEIFLNYVSGKLIVSAIVGLCVYIVLLVTGTPYAALSAVLLGVGNMIPYVGSIIGGIIAF 276

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +   I   +    + P ++G  + L        ++      G++G
Sbjct: 277 FLILLVAPIKTIVLLIAITISQLVDGFIVGPKIIGNKVGLNTFWVMVSMIIFGNLFGIVG 336

Query: 328 LFIGPVLMALIAVIWKESIMAIK 350
           +F+G  ++++I + + + + A +
Sbjct: 337 MFLGTPILSIIKLFYVDLLKAKQ 359


>gi|307151406|ref|YP_003886790.1| hypothetical protein Cyan7822_1521 [Cyanothece sp. PCC 7822]
 gi|306981634|gb|ADN13515.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 385

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 112/328 (34%), Gaps = 9/328 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  +       + +  F  +L A ++ F      +   +K   +    A+   +  +
Sbjct: 36  LTVLNAWAFSTIFGYFQSLFVIILLASVVAFLLSYPVNWLENK-GINRPQAAIGVFLVTL 94

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F+   + L      + ++LV+++      G      L++              ++   
Sbjct: 95  LIFLAVAVTLVPLAYNQAQQLVARLPEWLDSGQHQLMRLNEQVDLWGLPISLDGLIAQIN 154

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S        L    ++          +  LD  L+II     L               SL
Sbjct: 155 SRLASELQTLGGKTLNLAVSLTVFTVVKSLDVLLTIILTFYLLLHT-------RDIWQSL 207

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            E L        S+ +    ++ FLG  I A    + L S++ +  VP  +  G+   +M
Sbjct: 208 IEWLPKPIQGPFSQTLRSSFQNYFLGQIISATCMAVGLVSSFLVLKVPFGLLFGLTIGVM 267

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP G   +       L+   +I  A  +     +   +V+  + P ++G    L    
Sbjct: 268 ALIPFGGS-AGIVTVTLLIALRDIKLALQVLACALVVQQVVENGIAPRILGSVTGLNPFW 326

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               L+ G R  GLLG+ +      +I 
Sbjct: 327 ILLALLSGARIGGLLGVIVAVPTAVMIK 354


>gi|148380520|ref|YP_001255061.1| hypothetical protein CBO2565 [Clostridium botulinum A str. ATCC
           3502]
 gi|153933161|ref|YP_001384807.1| hypothetical protein CLB_2506 [Clostridium botulinum A str. ATCC
           19397]
 gi|153936838|ref|YP_001388277.1| hypothetical protein CLC_2436 [Clostridium botulinum A str. Hall]
 gi|168180546|ref|ZP_02615210.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|148290004|emb|CAL84123.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929205|gb|ABS34705.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
 gi|152932752|gb|ABS38251.1| putative membrane protein [Clostridium botulinum A str. Hall]
 gi|182668572|gb|EDT80551.1| putative membrane protein [Clostridium botulinum NCTC 2916]
          Length = 342

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 111/319 (34%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++    K   +  F A++  V+++ +  V ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYVLKPIHTFLKQK-GINEKFSALLLVVTLIMIIGVFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    ++   +   ++ +        +  K     ++  +     +    
Sbjct: 90  IKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKF 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +               +  L    + I +++F   G  I Q+   +         K +  
Sbjct: 150 VGL------------GENILDYAVIPIIVYYFLAAGDKIIQKFFIIFPVKIRGMVKNVLE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   +  ++ +I+++
Sbjct: 318 AGMVLAIPIGVIMKIIYED 336


>gi|327543396|gb|EGF29821.1| permease [Rhodopirellula baltica WH47]
          Length = 645

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 99/251 (39%), Gaps = 3/251 (1%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
                 R   +   G       +   +  +          + +      R  S  G I +
Sbjct: 382 KTAAAVRSWMNQLLGGSLRSQLSLIANPDEKDFSSLIRMARESLQPRFVRLTSATGSIVV 441

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
                ++ ++++++FF  DG  + + L  L      AY  ++     +  R+  L     
Sbjct: 442 QVIFGLVILVVSVYFFLIDGPVMIRTLMRLSPMD-DAYEHQLLTEFDRTSRAVVLASVAS 500

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNAT 279
           A+ +G++    +WL G    V L  +T++MA++P     S        L   +     A 
Sbjct: 501 AVVQGILATIGFWLCGFDQIVLLLFLTSVMALVPFLGAASVWVPCALWLGLVDQRWIAAA 560

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L ++GA  +  +D  ++ +++ G  +L  L     ++GGV   G +G+ +GP+++  + 
Sbjct: 561 FLAIYGAAVVSSIDNVIKVYVLHGRSQLHPLFALLSVIGGVSVFGPIGILVGPMVVVFLQ 620

Query: 340 VIWKESIMAIK 350
            + +     +K
Sbjct: 621 TLLEILNHELK 631



 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 36/87 (41%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   I+ + ++    + GFF P+  A ++     PI+     K        A   T  
Sbjct: 88  VMLVIGILAVGVLFYRLMIGFFVPLFLAALLVVIFRPIHLWIFEKVGRRRRLAAGTTTAL 147

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKV 96
           ++ + ++PL  L      +   L+SK+
Sbjct: 148 ILFIVLLPLGVLVSVATTQFTILLSKM 174


>gi|262037961|ref|ZP_06011379.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264]
 gi|261748002|gb|EEY35423.1| conserved hypothetical protein [Leptotrichia goodfellowii F0264]
          Length = 355

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/333 (10%), Positives = 93/333 (27%), Gaps = 16/333 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           S+  + G   P + + +I ++  P         + +      +  +     FI  +L   
Sbjct: 39  SVQIITGTLFPFILSFVIVYSLMPFIDMLNENLKINRKVAISLVLLIFFIFFIYVILAFI 98

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  L+   +   ++                        ++        S    K
Sbjct: 99  PLVAGQLSSLIEFFIKNQENLQKNL----------------ISFMAQNNINIRDSIINSK 142

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                   +  +    +       +    I          +I + + +L        W  
Sbjct: 143 EVIFTNFLKVLNSSVSLLTGTFSFLFMTPIFTIMLIFSYDNIDEGIKNLLRKFDREEWIP 202

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + + +   I        + ++  G+     ++   +       +I     +IP   P   
Sbjct: 203 LIKQMDDAIGKYIKVTVLDSLIVGICSYVIFFFLKMEYSSLFSMIIGAGNVIPFIGPFIG 262

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I      +      + +   I   I    ++P+L    + +  + T   ++ G   
Sbjct: 263 LIPVILYAATKSFKLVVIIIVLITILQTIEANIIKPWLTSKSVDIHPITTLLVVLIGGAL 322

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G+ G FI   +  ++ +        +K NKE 
Sbjct: 323 FGIGGAFIAIPVYIVLKLGVIFYFEKLKFNKEN 355


>gi|255532211|ref|YP_003092583.1| hypothetical protein Phep_2317 [Pedobacter heparinus DSM 2366]
 gi|255345195|gb|ACU04521.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 377

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 128/344 (37%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++  L  +  +  + + +I   L        PV+ A  I     PI+      K     
Sbjct: 1   MKDMPLTVRRSIELLGIALIGAILVIGNDIIMPVIMAFFISIVLLPIFRFLKKHKFPE-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++A +  + L  + +  + ++   ++  LV+       +     + LS+        
Sbjct: 59  ---IVAIILPILLVAIFVGVIVWFFSAQIGVLVADFPQIKNNVNSHLKSLSEWFS----- 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                        ++   T    + +    + AS   +      + +  + I ++     
Sbjct: 111 ----TISHVSTREQMKFITEKSDDLLGMAGKAASGAAVTLSSIFVFVGLLPIYIYLMLFY 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + +    +       K+       +I++  +G+ I      ++LG    L G+  
Sbjct: 167 KDILLRFIFMWFKSDHHPKVKEAIYETEAIIKNYLVGLLIQVTYMTILLGGILLLVGIKH 226

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI--FNATCLFLWGAIELFIVDKTLRP 298
            + +GVI AI+ +IP    +    + + L +  +   +    +    A+  F+ +  L P
Sbjct: 227 ALLIGVIFAILNLIPYVGALIGNIIGVLLTLTSSTELWPVITVLGVIAVVQFLDNNILMP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +VG  +K+  L    G++ G    G+ G+F+   ++A++ VI+
Sbjct: 287 RIVGSKVKINALFAILGVIVGGSIAGVSGMFLSMPIIAVLKVIF 330


>gi|224540904|ref|ZP_03681443.1| hypothetical protein CATMIT_00055 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526137|gb|EEF95242.1| hypothetical protein CATMIT_00055 [Catenibacterium mitsuokai DSM
           15897]
          Length = 419

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/370 (13%), Positives = 102/370 (27%), Gaps = 31/370 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA-------PVLSALIIGFTSWPIYSSFISKKE----- 56
           Q I   +++  IL +L  +  FF        P   A++I F                   
Sbjct: 13  QYITYGIVLAFILFNLESVWDFFLNALGLARPFYIAIVIAFVINIPMKLVEKLLVKAKGQ 72

Query: 57  ----------------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
                            +      I  + ++ + ++   F+          L S +    
Sbjct: 73  WMKKNPDSKLPKFLLEGTRGIAMAITIICLLLILVMFFSFIIPRIGESFSLLFSNLDNYA 132

Query: 101 QHGIPVPRWLS---DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
                    +    +I   +   E+     S   S  + +      +       F S  G
Sbjct: 133 SRLSVYITSICKRFNIDYSVTVDEVQKWFASIDLSTILATAGTFLGDPHFKTTEFVSNVG 192

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             F+    S    +  L    +      + +  +  H        I         S   G
Sbjct: 193 GSFITAITSFFMALYLLANKEKHLEQGRKLIAYILGHKRAGIAFDIMSEANHYFNSFVTG 252

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
             + A    L +  A  L G+P    + ++  + + +P           + L+      +
Sbjct: 253 QMLEATCFMLEVYIAMRLFGMPFPELIAIMAFLFSFVPMFGNFITFFAGLILVAAAQSKS 312

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
                +            + P +VG  + +  L    G+       G++G+ IG  L AL
Sbjct: 313 MLAFAIIYLCLQQFEGNVVYPKIVGKSVGIGGLFVLLGITIFGNLWGVIGILIGVPLTAL 372

Query: 338 IAVIWKESIM 347
           I  +    I 
Sbjct: 373 IYAVISRIIN 382


>gi|119503128|ref|ZP_01625212.1| hypothetical protein MGP2080_10708 [marine gamma proteobacterium
           HTCC2080]
 gi|119460774|gb|EAW41865.1| hypothetical protein MGP2080_10708 [marine gamma proteobacterium
           HTCC2080]
          Length = 402

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 124/331 (37%), Gaps = 7/331 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           +       F A +  ALI+  T +P++         S    A + + S + L  VP + L
Sbjct: 61  ICAKIFAPFAALMAWALILAITLYPLHLRLRDALAWSDARTATVISGSGLLLLGVPTVLL 120

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  ++++    +   +P    + D P             S   +  +      
Sbjct: 121 GMSLVDHIASIITQWQQGSLDIVPPDESVKDWPLVGERVYAIWLEASDNLAELLADHGEE 180

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             + +       +        +  +I+   I + +      ++ +   +L  +       
Sbjct: 181 VRSLLKRFVGGTTSMLTTVGLFLGAIVVAGIMMAYGRAGSSAMGRIAVTLVGNARGE--- 237

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++  +     RS   G+  +A+ + L+LG  +  A VP+   L V+  I  +I   A + 
Sbjct: 238 ELQVLSVATTRSVATGVIGVAVIQSLLLGIGFLWAEVPAAGVLAVLALITGIIQLPALLI 297

Query: 262 FTAVSIYLLIKGNIFNAT----CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
              V I+L   G    A+     +     I   + D  L+P L+G  + +P      G +
Sbjct: 298 TLPVLIWLWTSGGAGEASAVMDVVITIYLIIAGLADNVLKPILLGRGVDVPMPVVLIGAL 357

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           GG+  MGL+GLFIG V++A+   +    +  
Sbjct: 358 GGMVGMGLIGLFIGSVVLAIGYQLLWAWVDR 388


>gi|315103029|gb|EFT75005.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
          Length = 386

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 118/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFALVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   S +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPSHD 379


>gi|291618363|ref|YP_003521105.1| PerM [Pantoea ananatis LMG 20103]
 gi|291153393|gb|ADD77977.1| PerM [Pantoea ananatis LMG 20103]
 gi|327394756|dbj|BAK12178.1| putative permease PerM [Pantoea ananatis AJ13355]
          Length = 356

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 114/353 (32%), Gaps = 12/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ I   +I+      L+FL G  AP+L AL++ +           +   + ++
Sbjct: 10  KRRFSDPQAIGLLVILLAGFCILFFLSGLLAPLLVALVLAYLLEWPTVRLQ-RIGCTRSW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I  V    + +V +L +      +   L   +             L      +    
Sbjct: 69  ATSIVLVLFAGILLVLVLIVAPVAWQQGINLTRDLPNMLNKLYLYAAGLPRRFPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    + + +     +   D + +++    +  +   + ++ + + +FF  +D 
Sbjct: 125 ----VDAGIIDVIVENLRGRLSGVGDSLVKYSLASLVGLMTLMIYLVLVPLMVFFLLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++ + + + I +   G  +  +  G+    A+   G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGEVWQEMNQQITNYIRGKVLEMVVVGIASWLAFMFLGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + L V+  +  +IP    +  T   I   L   G       L     +   +    L P 
Sbjct: 240 LLLAVLVGVSVLIPYIGAMLVTIPVIGVGLFQWGLDSEFWTLLTVYLVIQALDGNVLVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L    + L  L     +V      G  G+F    L  L+  +      A  + 
Sbjct: 300 LFSEAVNLHPLVIILSVVIFGGMWGFWGVFFAIPLATLVKAVVHAWPEAPLDE 352


>gi|220931616|ref|YP_002508524.1| Sporulation integral membrane protein YtvI [Halothermothrix orenii
           H 168]
 gi|219992926|gb|ACL69529.1| Sporulation integral membrane protein YtvI [Halothermothrix orenii
           H 168]
          Length = 355

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 116/347 (33%), Gaps = 2/347 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++  ++  I ++ L +   +F+P + A I+     P+      K   +     +I  
Sbjct: 6   KRLLIYSVVFVIGVILLKYFFIYFSPFIIAAILASLINPVVDRLDEKIPVNRGLAVIIVL 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ + ++ ++       LE+  L+  +   +  G      +          +      
Sbjct: 66  VLLISILVLIIILGVSQIYLELNRLLQNLPDYSTFGSKFHWIVQQNYRLQEFIQELDISP 125

Query: 128 SHPQSLKILSETFLKTNGIDFI--PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S   +L    +          +                   +    IA +F  RD   I+
Sbjct: 126 SVKDALNNNLQMIYNAIKNGLVKGINGTLNLLGKLPMLLTILFLSFIATYFISRDKDKIN 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q +  L          K+ + +            I+    G++ G    + G    + +G
Sbjct: 186 QFIMKLFPGELKPKVFKVEKELINSAMGFIRAELILITITGIISGVGLAIIGNHYALIIG 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + +A++ +IP   P       I   +     +     L     +  V +     ++G  +
Sbjct: 246 ISSALLDLIPIIGPALIFIPWIIYNMIMGNLSYAFGLLVVYTLMAAVRQGAEGKVMGDNL 305

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +  L T   L  G R MG++G  +GP ++ +I  +    I+   + 
Sbjct: 306 GVHPLATMIALYVGYRVMGMIGFIMGPAILVIIKALINAEIIPPDKK 352


>gi|328752574|gb|EGF66190.1| hypothetical protein HMPREF9563_02304 [Propionibacterium acnes
           HL020PA1]
          Length = 386

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 118/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|327543545|gb|EGF29964.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 345

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 99/317 (31%), Gaps = 10/317 (3%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC---LFIVPLLFLFYYGMLEMKEL 92
            AL I     PI     ++   +    A +     +    L  + +         E K  
Sbjct: 1   MALFIVSGITPILDFLQARLNVNRIVAAGVTFALAIGGTFLVGMSIWLSMAQMSEEGKLY 60

Query: 93  VSKVVLANQHGIPVP-RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
             +V     +        +++        E     ++        +    +    D +  
Sbjct: 61  RMRVSEIVSNAEDWLHENVAERFESSEVGERSEAAVADLVEESEATVVPAERQEPDELLA 120

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG---EHLFPAYWKKISRIVP 208
            A+      L+  L      ++   F     SI   +        +L       ++  V 
Sbjct: 121 NAAADLRDQLEAFLRNAVATLSSELFQLGSTSIVILIYVFFLLLGNLSGYGENTLAYQVD 180

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA---V 265
           + +RS     T+I++  G+V G A WL GVP  +  G++  ++  IP   PI  +     
Sbjct: 181 RQVRSYLFVKTMISLATGIVFGMALWLFGVPMALTFGLLAFLLNYIPNIGPILASILPLP 240

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I L   G++                    L P L+G    L  +     L+      G+
Sbjct: 241 FILLHPDGSMLWMISAIAVTCSIQVASGNLLEPKLMGNSADLHPVVILLALMFWGTLWGI 300

Query: 326 LGLFIGPVLMALIAVIW 342
            G+F+   + A I +  
Sbjct: 301 TGMFLATPITAAIKIAL 317


>gi|66044791|ref|YP_234632.1| hypothetical protein Psyr_1545 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255498|gb|AAY36594.1| Protein of unknown function UPF0118 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 356

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APVL+ L++ F    + S+   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSALE-RLRMPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + +V LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T       L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|193068845|ref|ZP_03049805.1| putative membrane protein [Escherichia coli E110019]
 gi|193071500|ref|ZP_03052411.1| putative membrane protein [Escherichia coli E110019]
 gi|192955177|gb|EDV85669.1| putative membrane protein [Escherichia coli E110019]
 gi|192957921|gb|EDV88364.1| putative membrane protein [Escherichia coli E110019]
          Length = 353

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 17  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 72  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 132 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 192 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 235

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 236 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 295

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 296 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 327


>gi|187935233|ref|YP_001886750.1| permease [Clostridium botulinum B str. Eklund 17B]
 gi|187723386|gb|ACD24607.1| permease [Clostridium botulinum B str. Eklund 17B]
          Length = 370

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 99/341 (29%), Gaps = 2/341 (0%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
                +       +P   ALI  +   PI   F  + + S     ++    +  + I+  
Sbjct: 31  FFFNIVKHFFSIMSPFTYALIFAYILNPIMMIFEKRFKFSRGKSILVTYAIITGIIIMFF 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            F     +  +  ++ +V    +            P       +    L     L  +  
Sbjct: 91  FFTIPSLVDSIASIIKEVPNYMETIQEWINTAIKNPKLSEL--IIDAGLVDKIELLSIKM 148

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  +  +        +      +  I  L         +      + +    +
Sbjct: 149 GNFTITILQGMLGYLLSLTGNLVKIVFGFLIAIYVLSDKDGLLHGLKTITYIILKEKKAS 208

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K+     K+I        I +   GL+      +   P  + L +I AI  MIP   
Sbjct: 209 ELIKVCNTYSKMIGVYIGTKAIDSAIIGLISLIGLVIVKAPYALLLSIIVAITNMIPYFG 268

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P     V   + I  +   A  +F+   +        L P L+G  + +       G++ 
Sbjct: 269 PFIGEVVGAGVCIFVSPMKALIVFILLLLIQQFDAWYLDPKLIGAKVGVKPFWIIMGVII 328

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G    G +G+ +    +A I + +   +   K     +  N
Sbjct: 329 GGAFWGPIGMLLASPTIATINIYYIRLVKFYKSKNPSLFKN 369


>gi|26987969|ref|NP_743394.1| hypothetical protein PP_1234 [Pseudomonas putida KT2440]
 gi|148546507|ref|YP_001266609.1| hypothetical protein Pput_1264 [Pseudomonas putida F1]
 gi|24982683|gb|AAN66858.1|AE016314_5 permease PerM, putative [Pseudomonas putida KT2440]
 gi|148510565|gb|ABQ77425.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
 gi|313497586|gb|ADR58952.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 356

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 115/349 (32%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ F    + ++   +    +  
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALE-RVRVPTRL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++     M    V +L L      ++  L +++         +   L +    + + E
Sbjct: 69  AVMLVFALFMGALAVFMLVLVPLLWHQLITLFNELPGMLGKWQSLLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLHAIESVRGEI--------GKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +             ++   + + I +   G  I  +  G+    A+   G+   
Sbjct: 181 ELIGRWVSGYLP-RQRTLLNRVGSEMNRQIANYIRGKGIEILICGIATYIAFISLGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  +  ++P    +  T       L   G       L    AI   +    L P 
Sbjct: 240 ALLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQFIYLMTVYAIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAWPKQ 348


>gi|315130409|gb|EFT86396.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS03]
          Length = 361

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIIVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|226949920|ref|YP_002805011.1| hypothetical protein CLM_2872 [Clostridium botulinum A2 str. Kyoto]
 gi|226841709|gb|ACO84375.1| putative membrane protein [Clostridium botulinum A2 str. Kyoto]
          Length = 342

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++   +    + +I +   PI++    K   +  F A++  V+++ +    ++ +    
Sbjct: 31  IVRDILSLFFISFVIYYVLKPIHTFLKQK-GINEKFSALLLVVTLIMIIGAFIISIIPAI 89

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   + S V    ++   +   ++ +        +  K     ++  +     +    
Sbjct: 90  IKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKF 149

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +               +  L    + I +++F   G  I Q+   +         K +  
Sbjct: 150 VGL------------GENILDYAVIPIIVYYFLAAGDKIIQKFFIIFPVKIRGMVKNVFE 197

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++    +   I+ +   ++        G+   + L +I     +IP   P+  +  
Sbjct: 198 DIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLP 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I +    +   A    +       I    L P + G  + +  L     L+ G +  G 
Sbjct: 258 AILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGF 317

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+ +   +  ++ +I+++
Sbjct: 318 AGMVLAIPIGVIMKIIYED 336


>gi|90425501|ref|YP_533871.1| hypothetical protein RPC_4026 [Rhodopseudomonas palustris BisB18]
 gi|90107515|gb|ABD89552.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 374

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 104/333 (31%), Gaps = 16/333 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +++ +I+ +LY  K FF PV++A ++G    P        +        +I T+  
Sbjct: 33  ALVGLLIIVIVAALYVAKPFFLPVVTAFVVGTMLSPAAGLMERHRIPRPVSAVLIVTLVF 92

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                  + F+       + E  +++           + L          +     +   
Sbjct: 93  -----GMVAFIVALISAPVVEWSNRLPELGSMLKDKLQSLDRPIAMWHQLQGSLGGIDSS 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I                              +++F++  + F           + +
Sbjct: 148 TGPAIQFPKIEWVQPTYEFLS---------PTLTETLLFLVTLVLFIASWSDLRRGLVMT 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +I   +   +    L +T+I +G G+  G    LAG+P+  ALG + A 
Sbjct: 199 FASRETRLRALRILNEIEGSLGGYLLTVTLINLGYGIATGIICALAGMPNPAALGALAAT 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL--WGAIELFIVDKTLRPFLVGGPIKLP 308
           +   P   P     +   + I         L          F+    + P ++G  + L 
Sbjct: 259 LNFFPIVGPFVMFVILTVVGIVSFPTLGGGLVAPMAFVGLTFVEGHFITPTIIGRRLSLN 318

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  F  L       G +G F+   L+ +  V+
Sbjct: 319 TLAVFIALAFWTWLWGPMGGFLASPLLIVALVV 351


>gi|194292084|ref|YP_002007991.1| hypothetical protein RALTA_B1335 [Cupriavidus taiwanensis LMG
           19424]
 gi|193225988|emb|CAQ71935.1| conserved hypothetical protein; putative membrane protein (DUF20,
           UPF0118) [Cupriavidus taiwanensis LMG 19424]
          Length = 402

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/336 (10%), Positives = 102/336 (30%), Gaps = 7/336 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +   L +++  + F  PV+ A+++ +   P+  +   +   + +  + I  ++
Sbjct: 54  TALMVLAVLFSLYAMHVARDFLVPVVIAVVMAYLLDPLVCALQ-RLGLARSLASTIVLLA 112

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +     L       +  L       ++    +     D           T     
Sbjct: 113 LLSALLSGAYLLQGQVESMVNSLPEMASKLSRSLGALLS--GDDSMWQKIRRAATVLSGT 170

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q         +       I        +         + ++  L+F    G +  ++  
Sbjct: 171 GQPPPARGTQVVVEQSSGHINNMLLAGSVSVFTMAAQAVVVVFLLYFLMLAGDTFKRKFI 230

Query: 190 SLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            +             +   V   IR     + +   G G+         GV +  +  + 
Sbjct: 231 KMVGTTISEKKISVHMLDEVNLSIRRYMGMLVVTNAGLGVCTWVLLKWLGVDNAGSWSIA 290

Query: 248 TAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            A + ++P    ++       +  +  G +  A        +   ++   +  ++ G   
Sbjct: 291 AAALHLVPYFGALAIALCLGMVTFMQFGTLGMAAAAAGGSLLIATLIGSVITTWMTGRMA 350

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++  +  F  L+      G+ G+ +   L+ +  V+
Sbjct: 351 RMNAVAVFVALLLFTWLWGVWGMLLAIPLITIAKVV 386


>gi|170766882|ref|ZP_02901335.1| putative membrane protein [Escherichia albertii TW07627]
 gi|170124320|gb|EDS93251.1| putative membrane protein [Escherichia albertii TW07627]
          Length = 349

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 110/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +          IA   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIILNPLVNWFIRRGVRRP-----IAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   NQ        L +I   +       K L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNQELTRKLFKLQEILPFLNLHMSPEKLLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKLVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     +S     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVLSAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|295706856|ref|YP_003599931.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
 gi|294804515|gb|ADF41581.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
          Length = 369

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 108/338 (31%), Gaps = 10/338 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+   +   Y++     P + A  I F   P+ + F  K         +++ V +  L
Sbjct: 16  LVIIAASIFLSYYVSSLIYPFIIACCIAFFINPMVNLFELKLRLPRYLAVLLSMVLIFSL 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +  L    +     L   V    +  +     ++      +   + +   +     
Sbjct: 76  LAGLITLLITEIVAGSTYLAKVVPTNFKEVVIFIENIATEQILPFYERITSMFNNLNTGQ 135

Query: 134 KILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +    + +K  G          +  + +       +  +    IIF ++A FF  +D + 
Sbjct: 136 QATILSNIKGVGNHIAQTVGDFLQNVLQSIPVLLSVLPNAATVIIFSLLATFFISKDWYK 195

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +             + +   +   +         +     +++     +  V   + 
Sbjct: 196 LMAKSSVFIPKKVRENGQTVVLELKNALFGFIKAQLTLISITTIIVLFGLLVLRVDYAIT 255

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + ++  ++ ++P           +      +  +           + +  + + P ++  
Sbjct: 256 VALLIGLVDILPYLGTGLVFVPWMIYAFATDNVSFAVGLSVLYAVVLVQRQIMEPKILSS 315

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            I L  L T   L  G + +G  GL +GPV++ ++  +
Sbjct: 316 SIGLDPLATLISLFVGYQLIGFFGLIVGPVILVILKTL 353


>gi|120435935|ref|YP_861621.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117578085|emb|CAL66554.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 347

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 118/335 (35%), Gaps = 18/335 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                +  + + + L   KGFFAP+++A+I+     P+      K +      A++ ++ 
Sbjct: 11  SATIIVATYFLFLGLTKAKGFFAPMITAVILSLIVLPLSQRMERKLK--RPLAAILNSLL 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + I  +  + +    +++          +   P      +               + 
Sbjct: 69  LFLISIGLMAIVSF----QVRSFAEDWPQIKETMEPKIENAKEFALEHTPLNKQDIEEAK 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S  +  +            ++A  F      +  + +   + +FF           L 
Sbjct: 125 NSSSTMDLQP----------GKWAKTFMSGLSSFLANYLLTFVYIFFLLNYRHIFKNFLL 174

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +         K I     +V     LG  I+     ++      ++GV + + + VI A
Sbjct: 175 RVFPDEKQQTIKTIIVKSAEVAPQYLLGKLILMGLLAVIYSIGLGISGVNNFILVSVIAA 234

Query: 250 IMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++ +IP    +      V+   L  G+I     + L   I  F+    L+P++VG  + +
Sbjct: 235 VLTLIPYIGNVIGFVMAVAFGFLTSGDITVLIGIALTFTITQFVESYVLQPYVVGERVDV 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                   ++ G    G++G+ +   +MA+I V+ 
Sbjct: 295 HPFFVIVSVILGNMVWGVIGMILAIPIMAIITVVL 329


>gi|330428770|gb|AEC20104.1| hypothetical protein PT7_1564 [Pusillimonas sp. T7-7]
          Length = 396

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 18/332 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    ++ +L + K FF P++  ++I FT  P+ S     +        ++AT  VM
Sbjct: 43  LTILATVALVFALQWAKAFFIPLVLGILIAFTLNPLVSWLERMRLPR-----IVATSLVM 97

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG---------MWASEL 122
              +     +      E   ++ ++ +A        + +++   G             E 
Sbjct: 98  LALLGSSGMVAVSVYNEADAIMDELPVATYKLANAFKRINNGELGTLDKLRSAANTLKEA 157

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   Q+ +  +   +       +        +    +   +  ++   FF    G 
Sbjct: 158 AIPAAPETQASEKPAAPAVPAVPDLNLNDLLWTGSLNAAAFLGQMSMVLFLAFFALSSGN 217

Query: 183 SISQQLDSLGEHL--FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           +  ++L  L            +I   +   ++   L + +  +  GL+  + + L G+ +
Sbjct: 218 TFKRKLVKLTGPSISRKKITVQILDDINSSVQKYMLMLLVTNVLLGLISWAVWHLIGLEN 277

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRP 298
             A  V  A++ +IP    +   AV+ +       +      +          V   +  
Sbjct: 278 PGAWAVAGALLHIIPYFGSLLAAAVTGFAAFMQFDSFSMMLLVAAITLGIASFVGMLVAT 337

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           ++ G   K+     F  L+ G    G+ G+ +
Sbjct: 338 WMTGRIAKMNPAAVFVALLFGAWLWGVWGMLL 369


>gi|328956536|ref|YP_004373922.1| UPF0118 membrane protein YueF [Carnobacterium sp. 17-4]
 gi|328672860|gb|AEB28906.1| UPF0118 membrane protein YueF [Carnobacterium sp. 17-4]
          Length = 343

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/327 (15%), Positives = 111/327 (33%), Gaps = 7/327 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+           F PVLSA  + +   P+      K +   ++  ++     +    
Sbjct: 11  ISFVFQPLFVLFSTLFIPVLSAGFLFYLLNPLIKVMQ-KLKIKRSYAIILVMFLFLGGAT 69

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + ++  F   M ++ +LV+                         S      L    +   
Sbjct: 70  IFIIKTFPILMHQLSDLVANSPAILSDIE------IQTKDIALLSPFNNVDLDETLNQLN 123

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           LS        +       S       +  + +I + I LF+ + DG  +   +  L    
Sbjct: 124 LSLDAFSKTILSSFTTSISSIVGAIANLTIVLITVPIVLFYMFHDGEKLQLAVTHLFPIR 183

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +  +  ++      VI +   G  + +I   +++   + + G+P  + L ++     +IP
Sbjct: 184 YQKHVFELLHQTNLVITAYISGKGLASIVVAVLMYFGFLIIGLPYTLLLAIVNGFTNLIP 243

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P      +I + +  +   A  + L   +   +    L P  VG  + +  L     
Sbjct: 244 YIGPFIGAVPAIIVALTISPTTALLVALIVLVVQQLDANFLTPKFVGKSLAIHPLTIIII 303

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+   + +G++G+  G    A+I  I 
Sbjct: 304 LLVAGKMLGIIGIIFGVPAFAVIKTIV 330


>gi|311280807|ref|YP_003943038.1| hypothetical protein Entcl_3510 [Enterobacter cloacae SCF1]
 gi|308750002|gb|ADO49754.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 369

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 123/343 (35%), Gaps = 4/343 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ +          F   +L A+I+  T +P+   F ++      + + +  +  
Sbjct: 22  IKFGLILALASFCFTVFSPFLNMMLWAIILAVTLYPLQQYFAARLGGKQGWASTLLVLLG 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L + P + +       +  L+ K+   +    P    ++ IP             S  
Sbjct: 82  ILLIVAPTIAMVSSLGESVSALIDKMGSGSLVIPPPSESIASIPVVGGKLHALWLKASVD 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I +      +    +    +  G   L + +S I   I + +      S  +    
Sbjct: 142 LPGLISAYRTQLGDVAKQVLSVLASMGGGLLGFVVSFIVAGIMMAWGAAGANSARRIAMR 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L +         + ++    IR+   G+  +A+ + L+ G    LAG+P+     ++  I
Sbjct: 202 LTDENKG---VALIKLCTSTIRAVAQGVIGVALIQALLAGVVMALAGIPAVGIFFILALI 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +      +        +   G+       ++    +   + D  L+P ++G  +  P 
Sbjct: 259 LGIAQIPVILVTAPAIAIMWHMGDHGTGLNIIYTVLLLIAGMADNVLKPLMLGRGVDAPM 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                G +GG+   G+LG+FIG  L+++   I+   +     N
Sbjct: 319 PVVLLGALGGMAASGILGMFIGATLLSIGYRIFMAWVNEGLAN 361


>gi|15924002|ref|NP_371536.1| hypothetical protein SAV1012 [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15926600|ref|NP_374133.1| hypothetical protein SA0870 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21282622|ref|NP_645710.1| hypothetical protein MW0893 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49483174|ref|YP_040398.1| hypothetical protein SAR0979 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57650203|ref|YP_185883.1| hypothetical protein SACOL1017 [Staphylococcus aureus subsp. aureus
           COL]
 gi|82750624|ref|YP_416365.1| hypothetical protein SAB0878c [Staphylococcus aureus RF122]
 gi|87161559|ref|YP_493613.1| hypothetical protein SAUSA300_0913 [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88194705|ref|YP_499501.1| hypothetical protein SAOUHSC_00948 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148267444|ref|YP_001246387.1| hypothetical protein SaurJH9_1010 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150393497|ref|YP_001316172.1| hypothetical protein SaurJH1_1029 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221094|ref|YP_001331916.1| hypothetical protein NWMN_0882 [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979337|ref|YP_001441596.1| hypothetical protein SAHV_1006 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161509210|ref|YP_001574869.1| hypothetical protein USA300HOU_0970 [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140112|ref|ZP_03564605.1| hypothetical protein SauraJ_00580 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253731618|ref|ZP_04865783.1| permease [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253732630|ref|ZP_04866795.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|255005800|ref|ZP_05144401.2| hypothetical protein SauraM_05005 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257795255|ref|ZP_05644234.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|258406904|ref|ZP_05680057.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|258421872|ref|ZP_05684793.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|258435270|ref|ZP_05689009.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|258441482|ref|ZP_05690842.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|258446962|ref|ZP_05695115.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|258449940|ref|ZP_05698038.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|258452038|ref|ZP_05700054.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|258455036|ref|ZP_05702999.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|262052380|ref|ZP_06024582.1| hypothetical protein SA930_0122 [Staphylococcus aureus 930918-3]
 gi|269202626|ref|YP_003281895.1| hypothetical protein SAAV_0974 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894037|ref|ZP_06302268.1| hypothetical protein SGAG_01388 [Staphylococcus aureus A8117]
 gi|282903558|ref|ZP_06311446.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282905332|ref|ZP_06313187.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282908305|ref|ZP_06316136.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282910589|ref|ZP_06318392.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282916263|ref|ZP_06324025.1| hypothetical protein SATG_01098 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282918710|ref|ZP_06326445.1| hypothetical protein SASG_00016 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282923690|ref|ZP_06331369.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282927233|ref|ZP_06334855.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|283770078|ref|ZP_06342970.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283957755|ref|ZP_06375206.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|284023938|ref|ZP_06378336.1| hypothetical protein Saura13_05084 [Staphylococcus aureus subsp.
           aureus 132]
 gi|294847996|ref|ZP_06788743.1| hypothetical protein SKAG_00053 [Staphylococcus aureus A9754]
 gi|295405815|ref|ZP_06815624.1| hypothetical protein SMAG_00972 [Staphylococcus aureus A8819]
 gi|295427499|ref|ZP_06820131.1| hypothetical protein SIAG_00017 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296275576|ref|ZP_06858083.1| hypothetical protein SauraMR_04490 [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297208355|ref|ZP_06924785.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245406|ref|ZP_06929277.1| hypothetical protein SLAG_01503 [Staphylococcus aureus A8796]
 gi|297591550|ref|ZP_06950188.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300912431|ref|ZP_07129874.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304381434|ref|ZP_07364085.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|13700815|dbj|BAB42111.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           N315]
 gi|14246782|dbj|BAB57174.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21204060|dbj|BAB94758.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241303|emb|CAG39984.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|57284389|gb|AAW36483.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           COL]
 gi|82656155|emb|CAI80566.1| probable membrane protein [Staphylococcus aureus RF122]
 gi|87127533|gb|ABD22047.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87202263|gb|ABD30073.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147740513|gb|ABQ48811.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149945949|gb|ABR51885.1| protein of unknown function UPF0118 [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373894|dbj|BAF67154.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156721472|dbj|BAF77889.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160368019|gb|ABX28990.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724617|gb|EES93346.1| permease [Staphylococcus aureus subsp. aureus USA300_TCH959]
 gi|253729408|gb|EES98137.1| permease [Staphylococcus aureus subsp. aureus TCH130]
 gi|257789227|gb|EEV27567.1| conserved hypothetical protein [Staphylococcus aureus A9781]
 gi|257841443|gb|EEV65884.1| conserved hypothetical protein [Staphylococcus aureus A9763]
 gi|257842205|gb|EEV66633.1| conserved hypothetical protein [Staphylococcus aureus A9719]
 gi|257848931|gb|EEV72914.1| conserved hypothetical protein [Staphylococcus aureus A9299]
 gi|257852272|gb|EEV76198.1| conserved hypothetical protein [Staphylococcus aureus A8115]
 gi|257854294|gb|EEV77244.1| conserved hypothetical protein [Staphylococcus aureus A6300]
 gi|257856860|gb|EEV79763.1| conserved hypothetical protein [Staphylococcus aureus A6224]
 gi|257860253|gb|EEV83085.1| conserved hypothetical protein [Staphylococcus aureus A5948]
 gi|257862916|gb|EEV85681.1| conserved hypothetical protein [Staphylococcus aureus A5937]
 gi|259159752|gb|EEW44794.1| hypothetical protein SA930_0122 [Staphylococcus aureus 930918-3]
 gi|262074916|gb|ACY10889.1| hypothetical protein SAAV_0974 [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269940510|emb|CBI48888.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282316520|gb|EFB46894.1| hypothetical protein SASG_00016 [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319703|gb|EFB50051.1| hypothetical protein SATG_01098 [Staphylococcus aureus subsp.
           aureus D139]
 gi|282325194|gb|EFB55503.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282327970|gb|EFB58252.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330624|gb|EFB60138.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282590922|gb|EFB95997.1| conserved hypothetical protein [Staphylococcus aureus A10102]
 gi|282593076|gb|EFB98076.1| conserved hypothetical protein [Staphylococcus aureus A9765]
 gi|282595176|gb|EFC00140.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|282763523|gb|EFC03652.1| hypothetical protein SGAG_01388 [Staphylococcus aureus A8117]
 gi|283460225|gb|EFC07315.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           H19]
 gi|283470223|emb|CAQ49434.1| domain of unknown function, putative [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789904|gb|EFC28721.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|285816690|gb|ADC37177.1| hypothetical protein SA2981_0966 [Staphylococcus aureus 04-02981]
 gi|294824796|gb|EFG41218.1| hypothetical protein SKAG_00053 [Staphylococcus aureus A9754]
 gi|294969250|gb|EFG45270.1| hypothetical protein SMAG_00972 [Staphylococcus aureus A8819]
 gi|295127857|gb|EFG57491.1| hypothetical protein SIAG_00017 [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296887094|gb|EFH25997.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177709|gb|EFH36959.1| hypothetical protein SLAG_01503 [Staphylococcus aureus A8796]
 gi|297576436|gb|EFH95152.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           MN8]
 gi|300886677|gb|EFK81879.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|304340007|gb|EFM05950.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|312438615|gb|ADQ77686.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|312829407|emb|CBX34249.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           ECT-R 2]
 gi|315193672|gb|EFU24067.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS00]
 gi|315197533|gb|EFU27869.1| hypothetical membrane protein [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141172|gb|EFW33019.1| hypothetical protein HMPREF9528_00792 [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143229|gb|EFW35019.1| hypothetical protein HMPREF9529_01463 [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329728182|gb|EGG64621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21172]
 gi|329729028|gb|EGG65440.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21193]
 gi|329731164|gb|EGG67535.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           21189]
          Length = 361

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|254519809|ref|ZP_05131865.1| permease [Clostridium sp. 7_2_43FAA]
 gi|226913558|gb|EEH98759.1| permease [Clostridium sp. 7_2_43FAA]
          Length = 362

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 96/325 (29%), Gaps = 2/325 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 PV+  L+ G+   P+      K +       +   + V+ L I+  ++L    +
Sbjct: 32  FWSLMLPVVYGLLFGYILNPLVKFIKRKFKVKEGVAILSTYLLVLALLILASIYLIPIMI 91

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
               ++ +K+ +  Q        + +           T       +  I     +    +
Sbjct: 92  DSAVDITTKIPIYIQETQDWLDIILNNESVKEIIN--TTGTMDNVNHIITQFGTMAVTLL 149

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           +    +        +   L ++  I  L    R      +    + +        +  RI
Sbjct: 150 EGSISYIFTISSQIVKLFLGLLISIYVLVDKERLIKESKKVTFLILKEKKGKKLIEGVRI 209

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              +I +      I +     +      +        L VI  I  MIP   P     V 
Sbjct: 210 YHNMIGAYIGIKAIDSAIIAAMALVLLTIVKSEYAFLLAVIVGITNMIPYFGPFIGEIVG 269

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
               +  +      +FL            L P L+G  + +  L     ++ G    G L
Sbjct: 270 FLFNVFVSPTKGVIVFLVLLALQLFDGWYLDPKLIGDKVGVRPLFIIIAVLIGGGFYGAL 329

Query: 327 GLFIGPVLMALIAVIWKESIMAIKE 351
           G+ +     A I V ++  +   ++
Sbjct: 330 GMLLASPTAATIKVYYERIMKKNED 354


>gi|157413298|ref|YP_001484164.1| permease [Prochlorococcus marinus str. MIT 9215]
 gi|157387873|gb|ABV50578.1| Predicted permease [Prochlorococcus marinus str. MIT 9215]
          Length = 347

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 106/340 (31%), Gaps = 3/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +  ++ I  + ++ L+ F   ++ +L+I      + +      +   +    +    + 
Sbjct: 7   FKLAVILITSLIIWTLRDFLLLIICSLVISNIVCNLCNQIKKGLKIPRSLSLFLVLTVIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + +    + E  E++  +         +     +    ++  E     +    
Sbjct: 67  VIVFTIFILVLPPFIKEFNEILVDIPNGLSKINILINTNLNKFNSLFYGEQSENIIDIFS 126

Query: 132 SLKILSETFLKTNGIDFI---PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            +  +      +     I    +             L +IF++        +     + +
Sbjct: 127 LINNIVTIPDASTIAKAIQESFKNLINIAGNLGSGILKLIFVLAVSLMISIEPQQYKENI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +   ++ I       + +    M I ++  GL+      +  V   V+  +I 
Sbjct: 187 LLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYVVSNALIA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P+      I + +  N +    +     I   I    + P ++     L 
Sbjct: 247 MVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T     G     G LGL +   L  +I VI KES   
Sbjct: 307 PGLTLISQFGFTFIFGPLGLILSLPLAVVIQVIIKESFKD 346


>gi|169349711|ref|ZP_02866649.1| hypothetical protein CLOSPI_00449 [Clostridium spiroforme DSM 1552]
 gi|169293786|gb|EDS75919.1| hypothetical protein CLOSPI_00449 [Clostridium spiroforme DSM 1552]
          Length = 374

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 64/374 (17%), Positives = 128/374 (34%), Gaps = 20/374 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILV-----------SLYFLKGFFAPVLSALIIGFTSWPIYS 49
           M E  LN + I+  +I+ II             S+  L     P +   II F    +  
Sbjct: 1   MNENKLNYRKILEIVILGIICYWGLNHYEMIFKSISKLISVIMPFILGFIIAFILNVLMI 60

Query: 50  SFIS---KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
                  K   ++ F  +    S++   ++ L  L     L + E+ + + L       V
Sbjct: 61  RVEKVLNKFFTTNKFQIIKRIASIILSILILLGVLLLVVKLVIPEISNAIKLITTSLPEV 120

Query: 107 PRWLSDIPGGM--WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              L     G    + +L +   +          +     G   +         +F++  
Sbjct: 121 FETLEKWSKGDSGISLQLKSFFDTVDVQSLTSEFSEFAKIGFTGVLGSTVDILSMFVNGI 180

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR----STFLGMTI 220
            +II   +   +      ++ +Q   L     P         +  + R    +  +G TI
Sbjct: 181 FNIIVGFVFAIYILMSKETLKRQTRKLLSACLPPRITNKIIEIATISRTTFTNFIIGQTI 240

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            AI  G +      + G P    +G +  I A IP         +  ++++  +   A  
Sbjct: 241 EAIILGSLCALGMKIFGFPYAPMVGTLVGITAFIPIIGAFIGGGIGTFMIMTVDPMQALL 300

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             ++  I   I    + P +VG  + LP +   F +  G    G++G+      +++I +
Sbjct: 301 FIIYLVILQQIEGDLIYPRVVGSSVGLPSIWVLFAVTVGGGLWGIVGVLFSVPTLSVIYL 360

Query: 341 IWKESIMAIKENKE 354
           + KE I    ++ E
Sbjct: 361 LLKEYINNRSKSLE 374


>gi|300791109|ref|YP_003771400.1| hypothetical protein AMED_9310 [Amycolatopsis mediterranei U32]
 gi|299800623|gb|ADJ50998.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 400

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 106/350 (30%), Gaps = 14/350 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++++   +  L     P+  AL++     P     ++           I  +
Sbjct: 34  RLIVVAAALYVVGWVIGRLSVVVIPLGIALLLSALLAPAVQKLVA-VRFPRGLATAIVLI 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + +    L F+       + +L  ++  +                     +   +   
Sbjct: 93  AGLAVLGGLLTFVVTQFSSGLPQLQRQLNESLNQIKEWLINGPAHLRQEQIQQFINQVFG 152

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                          N   ++   A        +     +  +    FF   G  I   L
Sbjct: 153 ------------FLQNNQSWLTDTALTTASTVGEILTGFLLTLFITIFFLSGGEGIWTFL 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +             R     + S       +A+ + + +G   W+ GVP  + L  + 
Sbjct: 201 VRVAPGRVRNRVDVAGRRGFASLVSYVRATAAVAVVDAVGIGIGLWIVGVPLVIPLATLV 260

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     ++     +  L+      A  +       + +    L+P L+G  +KL
Sbjct: 261 FLGAFIPIIGAVLTGGVAVLIALVTNGFIGAVIVLAIVIGVMQLESHVLQPLLLGRAVKL 320

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
             L     +  G+   G+ G  +   ++A++    +  +     +  +++
Sbjct: 321 HPLSVVLAITVGLVVGGIAGALMAVPILAVLNAGVRSLLHEENPDPAEVN 370


>gi|210631055|ref|ZP_03296736.1| hypothetical protein COLSTE_00621 [Collinsella stercoris DSM 13279]
 gi|210160194|gb|EEA91165.1| hypothetical protein COLSTE_00621 [Collinsella stercoris DSM 13279]
          Length = 379

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/353 (13%), Positives = 118/353 (33%), Gaps = 20/353 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF---------------LA 63
           ++L +L      F PVL  L   F      S        +                    
Sbjct: 28  VVLGALSAAVDIFFPVLLGLGFAFVLNVPVSGMERLLHRAVGLVPEGRRPGEGAITMASI 87

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKE----LVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           V+  +++  + ++ +  L    +   +     L  ++    +  +     +  +      
Sbjct: 88  VLVLIAIAGVAVLGVTMLVPELIASARTVAPLLAERLPEIEESLVANGVDVEKLAQFFQG 147

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +   +   +     + L    L +         A     +      + +  +  L     
Sbjct: 148 AGASSATAAAGSGAQGLLNLGLGSIASSVFAA-ARSTVSVLSSSVFAFVIAVYVLASKRT 206

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +++ +D+       A  + ++ +          G  + A   G ++  A+ L  +P
Sbjct: 207 LGRQVNRVMDAHLAPGHAARIRHVASLATDTYSKFLSGQCLEACILGTLIFLAFSLFRLP 266

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +G +TA+ A +P     +  A+  +L +  +  +A    +      FI ++ + P 
Sbjct: 267 YAGLIGFLTALFAFVPYVGAFASCAIGAFLTLLASPEHAPLCVIVYLAVQFIENQFIYPH 326

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +VG  + L  L T    + G +  G++G+     ++A++  ++++   A    
Sbjct: 327 VVGSSVGLSALWTLIAALVGGKLFGIVGIVFFIPIVAVLYELFRQWTNARLAE 379


>gi|221213106|ref|ZP_03586082.1| integral membrane transport protein [Burkholderia multivorans CGD1]
 gi|221167319|gb|EED99789.1| integral membrane transport protein [Burkholderia multivorans CGD1]
          Length = 618

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/305 (12%), Positives = 82/305 (26%), Gaps = 19/305 (6%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD----------- 112
           +++ +  + L +  L    +    ++ EL S +             +             
Sbjct: 52  LVSVLVAVWLALSVLTAFGFLIGAQLAELASDLPRYQVAIERRVDNIQQTVVVHADAVLT 111

Query: 113 -----IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +       E  T                          + A  F    +    +I
Sbjct: 112 RTIDALKRVAPVREEHTSDTRPAGPADKAPLPVEVHEPSPSPLQLAQGFLSPVVSPLATI 171

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             +I+   F       + ++L  L                 + +   FL    + +  G 
Sbjct: 172 GIVIVTAIFILLQRADLRERLIRLAGSHDMHRTTTAMSDAARRLSRYFLAQLCVNVCVGA 231

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           VL     + G+P  +  GVI  +M  +P          +  L    +   +  + +    
Sbjct: 232 VLSLGLAVIGLPGALLFGVIAGLMRFVPYVGVWIAALPATILAAAMSPGWSMIVTILVLF 291

Query: 288 ELF--IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +      + L P + G    L  +      +      G +GL +   L  L  VI    
Sbjct: 292 SVTEVAAGQFLEPLVYGHSTGLSPIAVIVAAIFWSWLWGAVGLVLSTPL-TLCLVILGRY 350

Query: 346 IMAIK 350
           +  ++
Sbjct: 351 VSGLE 355


>gi|126650477|ref|ZP_01722700.1| putative permease [Bacillus sp. B14905]
 gi|126592633|gb|EAZ86632.1| putative permease [Bacillus sp. B14905]
          Length = 365

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 108/341 (31%), Gaps = 7/341 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    +  LK  F P+L   +  + + PI      + +       +     ++ +  V  
Sbjct: 31  IFSPLVIILKAIFIPLLLGGVFYYVTEPIQRFLEKR-KFPRWASILTIVFGLIGIAGVFG 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +      ++ +LV    + +       + L+D         L   +     +  I   
Sbjct: 90  WIIGNPIAEQVNKLVKNAPMISSSISTSIQQLTDYVL------LNKDNFPQQVNDVIEKM 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +      +    F    +   L  + +     F  +D    +  +          
Sbjct: 144 ANSVQDVAMVASKGFISFLQSIVSVSLLAVLIPFFFIFMLKDHEKFAPSIYKYFSGERQQ 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           + KK    +  V+RS   G   I+    L++   Y + G+   + L +    M MIP   
Sbjct: 204 WVKKTLSEIDDVLRSYIQGQLQISFLLALIMYVGYLIIGLEYSLLLVIFAFFMNMIPFIG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ + +  +      + +   +   I    + P ++G  + +  L     ++ 
Sbjct: 264 PWIAFTPALIVAVIQDPILVVWVSVVTLVAQQIDSNFITPNVMGKSLDIHPLTVITIILA 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G +G+ I     A++ VI           K+K + +
Sbjct: 324 AGNIAGFIGIIIAVPFYAVLKVIVSNIYDQRNAIKKKATKS 364


>gi|328880350|emb|CCA53589.1| integral membrane protein [Streptomyces venezuelae ATCC 10712]
          Length = 371

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/352 (13%), Positives = 114/352 (32%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++  + L  +  +     P++ AL +   +WP+      +        A   TV
Sbjct: 23  EALLVALMAGVALWIVGRMWSVVWPLVVALFLTTLTWPLTRFL-RRHGWPPAVAAGAVTV 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + L    +  +      +  EL   VV   Q                WA+        
Sbjct: 82  SFVLLVAGIVALIAVPVASQSGELSRGVVEGIQRLRE------------WAAGPPLNIGE 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S  + +      + +  +    +          ++    +  +FFF +DG      L
Sbjct: 130 DEISGALDTAMARVQDSVGSMVTAVATGVGTVFSGLVTAFLALFLMFFFLKDGPRFVPWL 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         +       + +       + I + +++G   W+  VP  + L V+T
Sbjct: 190 TRQLPGRLAVDVPVVVERSWYTLGAFVRSQAFVGILDAVLIGLGLWILDVPLVLPLAVLT 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    +       +  L+   + +A  +     +   +     +P +    + L
Sbjct: 250 FVSAFVPIVGALFAGLVAVLIALVSNGVTDALIVLAVIVVVQQLEGNVFQPMIQSRGLGL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   +  G    G++G  +   + AL+AV+W      + E+  +  S+
Sbjct: 310 HAAVVLLAVTLGGSLAGIVGSLLAVPVAALVAVVWNYLREQLGEDSPEPESD 361


>gi|291546514|emb|CBL19622.1| Predicted permease [Ruminococcus sp. SR1/5]
          Length = 293

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 85/259 (32%), Gaps = 1/259 (0%)

Query: 89  MKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           M  L+  +           R    +    M   +    +        I        N ++
Sbjct: 1   MGTLMMSIADFIPQMQSWIREFSHNNQEIMKLVDQVQFNPDQAIKWGISLLGNGAGNMMN 60

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                          + ++  F    LF   +    I +   +         + K+  + 
Sbjct: 61  TTMSAVGSIVSGLATFFIAFSFACYVLFQKEKLHVQIRKVFFAFLPKKKADAFLKVCSLT 120

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            +   +   G  + A+  G +      +  +P  + +GV+ A  A+IP        AV  
Sbjct: 121 YRTFANFLAGQCLEAVILGCMFVVILSILRIPYALLIGVLIAFTALIPIFGAFIGCAVGS 180

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L+   N   A    +   +   I    + P +VG  + LP +     +  G   MG++G
Sbjct: 181 FLIFMVNPKQAILFIIVFLVLQQIEGNLIYPHVVGESVGLPSIWVLAAVTIGGNLMGIVG 240

Query: 328 LFIGPVLMALIAVIWKESI 346
           + +   L+++   I++E +
Sbjct: 241 MLVFIPLLSVFYTIFREFV 259


>gi|322372142|ref|ZP_08046683.1| hypothetical protein ZOD2009_21617 [Haladaptatus paucihalophilus
           DX253]
 gi|320548151|gb|EFW89824.1| hypothetical protein ZOD2009_21617 [Haladaptatus paucihalophilus
           DX253]
          Length = 331

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 66/348 (18%), Positives = 137/348 (39%), Gaps = 18/348 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G + ++I    +++   +K F   VL+A+++G+   P+ + F S+   S+   A+
Sbjct: 1   MNRQRGFLLFLIAVFGVLATLLVKPFLQYVLAAILLGYILHPVQTRFESR--VSARVSAL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                   + IVP+  +      +   LV  +V  +     +   +              
Sbjct: 59  SLISLTTLVVIVPVGAIAVIAAQQAFTLVRAIVQGDPRFAELIALVERY----------- 107

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +         +  L       +   A        D  + +  M+  L++   DG   
Sbjct: 108 ---TGVTIHGRTLQELLPAGSSSRLIENALGIFGGLSDALIGLTVMVFILYYLLTDGEEF 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              +      L      ++   + +V+    +G  ++ I +G++ G  + +AGVP  V  
Sbjct: 165 VAWIRRCTP-LPDDVQDELYSEMDRVMWGVLVGNLLVGIVQGILTGIGFVIAGVPGVVFW 223

Query: 245 GVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V+T +++++P     + +   S+YL +      A  LF++G + + + D  LRP + G 
Sbjct: 224 TVVTTVLSLLPLIGASVVWLPASLYLFLVDRPIAAAFLFVYGTLVVSLSDNYLRPLVSGH 283

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             KL       G+ GGV   G +GLF GP+++ +   +         E
Sbjct: 284 EAKLNPGILVVGIFGGVYVFGFMGLFFGPIVLGIFRSLLTVFAREYAE 331


>gi|326778235|ref|ZP_08237500.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658568|gb|EGE43414.1| protein of unknown function UPF0118 [Streptomyces cf. griseus
           XylebKG-1]
          Length = 368

 Score =  110 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 97/325 (29%), Gaps = 18/325 (5%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  +  LK    PVL AL+      P++   I++   + +  A +   +++ +       
Sbjct: 33  IWLVVALKTAVTPVLLALLGTALLGPVHRWLIAR-GLNRSLAAGLTCAALVAVVGGAGYI 91

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +    ++V  +  A Q  +                       +        +   
Sbjct: 92  VVTALIDSGDQIVDSLKDAGQWVVDHLD----------------IAGATNVDDLADNAKG 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L                 +      + +  ++  FFF RD         ++         
Sbjct: 136 LVEKFGASAAGGLLSGISLVGSLVATSVLALLLTFFFLRDSDRAVNLAHAVAPRGTGDLV 195

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP- 259
           + + R   + +     G T IA+ + + +     +  VP  V LG +  + A IP     
Sbjct: 196 EAMGRRAFEAVEGFMRGTTFIALIDAVCITVGLLILDVPGAVGLGALVFVGAYIPYLGAF 255

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS     +  L       A            +    L+P +    +++        L  G
Sbjct: 256 ISGAVAVLVALADRGFVIALWALGVVLAVQVLEGHVLQPMIQSRTVQMHPAMIMIALTAG 315

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               GLLG+ +   L A    +  E
Sbjct: 316 ASVAGLLGMLLAVPLCAAAFGVLGE 340


>gi|332043622|gb|EGI79817.1| protein of unknown function UPF0118 [Lacinutrix algicola 5H-3-7-4]
          Length = 363

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 118/351 (33%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + + I+L  LY ++   A +  A +I     P+      K + + T   +    
Sbjct: 12  RAFAIIVGIVILLWFLYTIQSVIAYLAIAGVISLIGRPLVIFLKRKLKFNDTVAVITTMF 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +       + + + L           + + +  ++I               
Sbjct: 72  LFILVIAAIIGMFIPLAIEQGQNL---------SLLNIDQLQTNIENLYQEFIQHFNLNK 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I            FIP F +     F  + + +  ++   FFF +D       +
Sbjct: 123 TDVEESIKDSKVFSKLNFGFIPNFLNAVVTGFGSFSIGLFSVLFISFFFLKDSNLFGSSI 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++      +  KK    +  ++   F G+ +  +    +      + G+ + V +  + 
Sbjct: 183 LTIFPKAQESRIKKSFITIRDLLSRYFGGLLLQLLILFTIYSIVLLIFGIENAVIIASLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNAT---------CLFLWGAIELFIVDKTLRPF 299
           A++ +IP   PI    + I L +  N+  +           + +   +   + +   +PF
Sbjct: 243 ALLNIIPYVGPIISGVLIILLTMSSNLGQSFSDVILPKTMYVMIGFIVAQLVDNFFSQPF 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F  ++      G++GL I   L   + VI KE +   +
Sbjct: 303 IFSKSVKSHPLEIFIVIIIVGLLFGIVGLIIAVPLYTALKVIAKEFLSEYR 353


>gi|296128904|ref|YP_003636154.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
 gi|296020719|gb|ADG73955.1| protein of unknown function UPF0118 [Cellulomonas flavigena DSM
           20109]
          Length = 384

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/338 (16%), Positives = 119/338 (35%), Gaps = 16/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +    +  +++++L  L     PVL AL++     P+  +   ++   S     IA +
Sbjct: 44  QVLAVLALGAVVVLALTRLTLVVIPVLIALVLASAISPLVGAL-RRRGVPSLLATWIALL 102

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L    +  +    + +  EL  + +          + L                  
Sbjct: 103 GLVALLAAIVWLVVRAVVDQWDELRDQALDGFDELQTYVQGLP--------------FDV 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + +  + E+       D +   A        D+      M++ LFFF +DG +I + L
Sbjct: 149 TDEQIASVRESAAGLLRSDAVGSGAIAGVSQTADFVAGFFIMVVVLFFFLKDGPAIWEFL 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               E       +++     + +     G  IIA  + + +G    L GVP  + L V+ 
Sbjct: 209 LRPFEGERYLRGRRVGDATVRALGGYVRGTAIIAAVDAVGIGIGLALVGVPLVIPLSVLV 268

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++A +P     I+    ++  L+      A  +     +   +    L+P ++G  ++L
Sbjct: 269 FLLAFVPLVGATIAGVLAALVALVAVGPVQALVVVGIVVLVNQLEGDLLQPVVMGRQLRL 328

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             L     L  G    G+ G  +   L A      +  
Sbjct: 329 HPLVILVALTAGTVLAGVTGAVLAVPLAASAWRAVQVW 366


>gi|23011012|ref|ZP_00051509.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 384

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/364 (10%), Positives = 96/364 (26%), Gaps = 22/364 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +     L   +        + S ++       +          +  F   +A + +  L
Sbjct: 21  VVAFAAGLWLAWTASATLLLIFSGILFAVFLDGLTRGLGYVLPIARGFRLALACLVLAGL 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +    F       + ++L + V   ++      +                 +       
Sbjct: 81  ALGLSAFGGATVARQARDLGTTVRQQSETVRDWLKERGIEIDLSQGMPTGPGNQGDHGDE 140

Query: 134 KILSETFLKT----------------------NGIDFIPRFASRFGMIFLDYCLSIIFMI 171
              +E                           +    +   A+   +   +   +++ ++
Sbjct: 141 AGRAEGKESGGQKQGGLAGLASGALKSPGSLLSDAGSVLGPAATVVIGLFNALGNLLVIV 200

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                   D  S       L          ++     + +R    G  +      ++  +
Sbjct: 201 FLGVAIAADPGSYRDGALRLVPRRHREKGARVLDGSGETLRHWLFGQLVTMAAIFVLTWA 260

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
              + G+   + LG+   ++A +P   P+    V +   +                    
Sbjct: 261 GLSVLGIGGALILGLQAGLLAFVPTIGPLIAGVVIVLSSLASGFNGLLGALGVYLAVQAA 320

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               L PF+    + LP    F G +      GL G+ +   L+A+I V+ +E  +    
Sbjct: 321 ESYGLTPFIQRQALDLPAATIFAGQLLLGVLFGLWGVDLALPLVAVIKVLLEELYIEDGA 380

Query: 352 NKEK 355
             E 
Sbjct: 381 EAET 384


>gi|52424483|ref|YP_087620.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306535|gb|AAU37035.1| PerM protein [Mannheimia succiniciproducens MBEL55E]
          Length = 348

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 115/347 (33%), Gaps = 20/347 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +++   Q ++ +  + IIL  +        P L +L I     PI     ++K     
Sbjct: 1   MNKSVSVNQFLIGFAALVIILAGIKMAGEIVVPFLMSLFIAIICSPIIKFMTNRKIPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+      + L    LL L    + E  + + +                 +      +
Sbjct: 59  WLAISILFLFIVLVFFFLLGLVNSSIREFSQSIPQY---------------RVLMSERLN 103

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+          L +  ET L+      I  F SR  + F +   +   +I+ + F   +
Sbjct: 104 EITALIQKWNLPLNLEKETILEHFDPSSIMNFVSRLLLSFSNVLSNAFVLILVVIFMLLE 163

Query: 181 GFSISQQLDSLGE--HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +  +++           +  +K    + + + S     T +++  GL         GV
Sbjct: 164 APTAKRKVALALSGNEKDASKEEKHLERILQGVISYLGVKTAVSLLTGLCAWVLLETCGV 223

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              V    +T +   IP    I      +   L+         +         ++   L 
Sbjct: 224 QYAVLWATLTFLFNYIPNIGSIIAAIPIVLQALLLNGFSTGFAVMTGIIAINMLIGNFLE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P L+G  + L  L  F  L+     +G +G+ +   L   + ++ + 
Sbjct: 284 PKLMGRTLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIMLEA 330


>gi|150017277|ref|YP_001309531.1| hypothetical protein Cbei_2417 [Clostridium beijerinckii NCIMB
           8052]
 gi|149903742|gb|ABR34575.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 393

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 119/350 (34%), Gaps = 17/350 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-----------SSTFLAVIATVSVM 71
            L +L     P++  +II +  +PI  S  +  ++                 +I  V ++
Sbjct: 43  FLGYLTNLIKPLIFGIIIAYLLYPITRSIETFLKQNKLYKLEKASTRRIIAIMITYVLII 102

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F   +L +++    ++    + + +     + +              +          
Sbjct: 103 GIFSGLILGIYFMIGGQISNNTTIINMTQHISLYLKSNSFSTESIKGTLDRLDNSFIDNI 162

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I+S        ++      + + M       +    ++   +  +D        + L
Sbjct: 163 KPYIISGIIYLQRYVESNLGNMTSYIMSIGSGVATFFIALVISIYLLKDSEYFIGLWNKL 222

Query: 192 GEHLFPA-----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +F           + R+V +V      G  + A   G++   A  + G+     +G+
Sbjct: 223 YYLVFGKSILGSKIIYVFRVVHEVFAKYLRGQLLEAFFVGVLSAIALSIVGIDYAFVIGI 282

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I  I  MIP   PI  T ++  + L+ G         +   +   I +  L P +VG  +
Sbjct: 283 IAGISNMIPYVGPIIGTILAAIMGLLSGAPIRIVYAIVAMLVVQQIDNNLLAPKIVGNSV 342

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L  + T   ++ G    GLLG+ +   + A   V++        E +++
Sbjct: 343 GLHAVFTMMAILIGGNVGGLLGMLLAVPVAASFKVLFNNWYENYIEKQKQ 392


>gi|260599778|ref|YP_003212349.1| hypothetical protein CTU_39860 [Cronobacter turicensis z3032]
 gi|260218955|emb|CBA34310.1| UPF0118 inner membrane protein yhhT [Cronobacter turicensis z3032]
          Length = 354

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 110/331 (33%), Gaps = 22/331 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + +   + IIL  ++       P+L AL +     P+ + F+ +          +A   V
Sbjct: 19  LQKLAALVIILAGIHAAADVIVPLLLALFLAIVLNPLVTWFMRRGFRRP-----VAITIV 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E ++ +   N+        L ++   M       + L   
Sbjct: 74  VFVMLIGLTLLLGVLAASFNEFIALMPKYNKELTRKLLHLQEMVPFMHLHLSPERMLQRM 133

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S K+++        +      A    M  +     +  +   L F   +       L  
Sbjct: 134 DSDKMVTFATTLMTQLSGAMASAVLLVMTVVFMLFEVRHVPYKLRFALSNPQLHIAGLHR 193

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                             K +       T+I++  G+++     L  +   +  GV+  +
Sbjct: 194 AL----------------KGVSHYLALKTLISLWTGVIIWLGLTLLDIQFALMWGVLGFL 237

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP     +S     I  L+   ++    + +   +   I+   + P ++G  + +  
Sbjct: 238 LNYIPNIGAVLSAIPPMIQALLFNGVYEVVMVGVLFLLVHMILGNIVEPRMMGHRLGMST 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +  F  L+     +G +G+ +   L ++  +
Sbjct: 298 MVVFLSLLFWGWLLGPVGMLLSVPLTSVCKI 328


>gi|197285279|ref|YP_002151151.1| hypothetical protein PMI1420 [Proteus mirabilis HI4320]
 gi|227355709|ref|ZP_03840102.1| inner membrane protein [Proteus mirabilis ATCC 29906]
 gi|194682766|emb|CAR42995.1| putative membrane protein [Proteus mirabilis HI4320]
 gi|227164028|gb|EEI48925.1| inner membrane protein [Proteus mirabilis ATCC 29906]
          Length = 370

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 70/354 (19%), Positives = 135/354 (38%), Gaps = 7/354 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +         I F I+ S + L  F    + A +I   +WP+      + +       +I
Sbjct: 10  IPKILFTVLFISFFIIGSFWILNPFIVGFIWAGMIVVATWPLLIILEKRVKY-RWLSTMI 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELWT 124
             + ++ +F++P++ L    +     L+      +    P   WL +IP  G    E W 
Sbjct: 69  MMILILLIFVIPIILLISSVIDNSAPLIELAKSPSDIQPPQLLWLKEIPMVGNTLYETWH 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    +  +           ++    A   G   L        M++     +  G ++
Sbjct: 129 SILVSGGNALMAKIQPYIGQAANWFFAQALNIGRFALHLV----VMLLFSGLLFLQGENV 184

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L      L          +    IR+  LG+ + A+ + ++ G    ++GVP    L
Sbjct: 185 VAWLRHFAVRLAGQRGDAAILLASMSIRAVALGVVLTALIQAVIGGIGLGISGVPYATVL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  I  +   G         ++L   G+      + +WG I   +    LRPFL+   
Sbjct: 245 TVLMFICCLAQLGPLFVLVPSILWLFWTGDTTWGIVMIIWGGIVATMDG-VLRPFLIKMG 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             LP +    G++GG+ T+G++GLFIGPV++A+   +    I  + +    ++ 
Sbjct: 304 ADLPMVLILTGVIGGILTLGMIGLFIGPVVLAVAHSLLNAWINEVPKPDPDLTE 357


>gi|325970710|ref|YP_004246901.1| hypothetical protein SpiBuddy_0880 [Spirochaeta sp. Buddy]
 gi|324025948|gb|ADY12707.1| protein of unknown function UPF0118 [Spirochaeta sp. Buddy]
          Length = 410

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 106/335 (31%), Gaps = 19/335 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +  IL  L   K    P++ +        P+      K      F        
Sbjct: 14  IFLGILAVLAILAVLKVSKDVTIPLVLSFFCFLLFSPLLRRL-DKLHIPKIFSVTFVMAL 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +F++   F+          LV  +    +  + + R +S          L T  L  
Sbjct: 73  LLFIFVLAGWFVIMTV----DTLVRLIPFYAEKVVSLDRLISSRVSTFVDLPLGTSFL-- 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                    + L  N         +     FLD       + I   F   +  S+  +L 
Sbjct: 127 ---------SLLPVNWSSLAISSLTSISNKFLDITKVATLVYIFFLFLLLERQSVIPKLL 177

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +            +   + + I    L   +I+   GL    A  + G+   +  GV+  
Sbjct: 178 AAIPKSKGMKIAVMFERITRQISKYLLLKAVISAFTGLFFFLAAIVTGLDLPILWGVLAF 237

Query: 250 IMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +   IP    +  T ++I++ +     +  N   + +       I+   + P L GG + 
Sbjct: 238 VFNFIPSVGSVIVTTLTIFMALIQFAPDWTNVMYVGILTISTQMILGNIIDPRLQGGQLN 297

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L        L       G+ G+FI   L +++ ++
Sbjct: 298 LSPFVILVSLSLWGFIWGIPGMFISVPLTSVLQIL 332


>gi|313891995|ref|ZP_07825596.1| putative membrane protein [Dialister microaerophilus UPII 345-E]
 gi|313119638|gb|EFR42829.1| putative membrane protein [Dialister microaerophilus UPII 345-E]
          Length = 347

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 115/345 (33%), Gaps = 14/345 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------KKEESSTFLAVI 65
           +R  I+  + + L+F      P   +L +     P+             K     F  +I
Sbjct: 9   LRVTIVVFLGILLFFAPVVVFPFGISLFLAILLNPLAKFIQKNILKLKIKWFPYDFSIII 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + +  + +     + +F   + E++  +  V         +   L               
Sbjct: 69  SFIVFITIVYSIGVHIFVPFINELRAFIKSVPDTLNALQQLMMSLEKNYSLSLLPPEVKT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++            L    I  +   AS          L +I +    F+F + G    
Sbjct: 129 VIARVIQNIGEYTLKLAQFSISAVFSVAST--------LLELIVVPFITFYFMKKGRVFK 180

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               SL    +      +   +  V+ +   G  +++    + +     +  +P  + +G
Sbjct: 181 DLFISLFPERYSNRLNILFSEIYNVLHAYIRGQLLLSAIMTIFVCIGMSMFDIPYPLVIG 240

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++ MIP   PI      I L +      A  + ++      +    + P L+G  I
Sbjct: 241 LLAGVLEMIPIVGPIIGALPPIVLGLLQGTSTAIQVTIFYIFVQQLDAHLIMPKLMGSII 300

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           K+  +    G++ G +  G++G+ +    +A++ ++ +      +
Sbjct: 301 KVHPIVIIAGVLIGGQLYGVIGMMVSVPFIAVLQIVLRHMWFYER 345


>gi|148239692|ref|YP_001225079.1| permease [Synechococcus sp. WH 7803]
 gi|147848231|emb|CAK23782.1| Predicted permease [Synechococcus sp. WH 7803]
          Length = 359

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 35/340 (10%), Positives = 111/340 (32%), Gaps = 3/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +  + I  + L+ L+     + + +++      +  +   +         ++  + + 
Sbjct: 7   LGFAALLISGLLLWSLRDVLIHLFAGVVLAMALCTLVGALRERWTLPRPLALLVCLLGLA 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL---SDIPGGMWASELWTKHLS 128
            +  + +  +      + ++L+ ++  A +    +       + +      ++       
Sbjct: 67  SVVAIAVAVILPPFFSQFQQLLIQLPTAARELQQIITGWISSASMLVYGQNTQPAITPSD 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L  L       +G+    +          +  + ++F+            +  +  
Sbjct: 127 LSNGLSALPSGSALASGVSGSLKGLLGLAGNLGNGLVQLLFVFAVTLMVSIQPMAYREVG 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +    + I       + S  +G+ I +    ++ G    L GV   VA  ++ 
Sbjct: 187 IQLVPSFYRRRARTILLQCGDALSSWMIGVLISSFCVAVLAGIGLTLLGVKLVVANALLA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P   T   + + +    + A  + +   +   +    + P ++   + L 
Sbjct: 247 GLLNVIPNVGPTLSTVFPMSVALVDAPWKALAVLVLYVVIQNVESYVITPSVMQHQVNLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T           G LGL +   L  ++ V+ +E ++ 
Sbjct: 307 PGLTLTAQFIFTVLFGPLGLLMALPLAVVLQVLIREIVIH 346


>gi|148545994|ref|YP_001266096.1| hypothetical protein Pput_0748 [Pseudomonas putida F1]
 gi|148510052|gb|ABQ76912.1| protein of unknown function UPF0118 [Pseudomonas putida F1]
          Length = 365

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 132/344 (38%), Gaps = 3/344 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +++ +    + F   ++ A+I+  T +P++     +      ++A +  + V+ L 
Sbjct: 24  LVAALVIFAFQVFQPFLELMMWAVILAVTLYPLHCRIQRRTGLKQGYVATLVVLLVLVLL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP+  +       +  LV+ +          P  ++  P             S   +  
Sbjct: 84  LVPIYLVMMSIGESVDSLVTLLKSGAWSVPVPPDSVATWPLIGPKVHALWLAASENMASV 143

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +             +   A+  G  FL +  +II   + + F  R               
Sbjct: 144 LNQWMPQIKGAGLTVLGAAASAGGAFLLFIGAIIISGVIMAFGERGE---IAAQRIAMRV 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ + 
Sbjct: 201 SGAERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFIVKGVPGAGMLAIVILMLGIA 260

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              A +    V IY+        AT +F        + D  L+P L+G  + +P      
Sbjct: 261 QAPATLVTLPVIIYVFNAEGFTVATIIFAVYTFVAGLADNVLKPLLLGRGVDVPMPVVLI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G +GG+   G++GLFIGPV++ +  V++ + +      +    +
Sbjct: 321 GALGGMVVKGIIGLFIGPVILGVAYVLFWQWVALQVPEQPAPPA 364


>gi|311069412|ref|YP_003974335.1| putative permease [Bacillus atrophaeus 1942]
 gi|310869929|gb|ADP33404.1| putative permease [Bacillus atrophaeus 1942]
          Length = 371

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 103/344 (29%), Gaps = 10/344 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +  + I    + ++Y+      P L ALI+     P             T   ++   
Sbjct: 11  RTLFVFTISTGSIAAVYYSFPLIYPFLIALILSSAIHPFVEYLDRLTSLPRTLNVILVLA 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  L  L    +     L   +       I     L       +  EL      
Sbjct: 71  FFLLITVGALTLLVAEIVSGTAYLAKTLPPHLNTFIIFCEKLFTTHIQPFYHELTVLFNG 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              + +    T ++  G          +  I     +   +  +     IF ++A FF  
Sbjct: 131 LETNQQASIVTQIQALGDSAAKNAGLILSHILEMIPKIFALLPNTAAVFIFSLLATFFIT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   L S+      A  K +   + K +         +     +++    ++  V
Sbjct: 191 KDWHKLKALLLSILPERISANGKAVGSELKKAMAGFVKAQAALVFLTMIIVCIGLFILKV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +  +  ++ ++P     S     I  L                + + I  +   P
Sbjct: 251 EHPATIAFLIGLVDLLPYLGTGSVFVPWILYLSITGQLPLAIGIGILYLIVLIQRQLTEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L+   I +  L T   L  G +  G LGL  GP ++  I  + 
Sbjct: 311 KLLSKSIGIDPLATLIALFAGFKLFGFLGLIAGPAILVFIQALL 354


>gi|303238498|ref|ZP_07325032.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302593896|gb|EFL63610.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 375

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 116/356 (32%), Gaps = 13/356 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----------SS 59
            ++  +    ++  +  + G   P+L    I +    +   +                  
Sbjct: 22  VLLIILNFAGVINIVRNIYGVVFPLLLGGGIAYVLNLLVVLYEKIYFPKSKNKVIISSRR 81

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               +++ +++    +  L+ L       +  L+ +     +  +      +D       
Sbjct: 82  GISILLSILTIGVFLLFFLIILIPQVNQFIDLLIERFPAIYESVVAWANQYADQLP---V 138

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +     L+      +   + +  +                + + L++ F I  LF    
Sbjct: 139 LQEKLNGLNMDGKTALEKGSKILGSWAGGTVSLVGTIFGKIMSFILALFFSIYILFSKED 198

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
             +   + +++            + R   +   S  +G    A+  G++      + G P
Sbjct: 199 LKYKFEKLINTFMRADRRKKLYNVLRTANESFSSYIVGQCKEAVIIGVLCTLGMVIFGFP 258

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               +G +  + A+IP        A+   L++  +   A    L+  I   +    + P 
Sbjct: 259 YATVIGPVIGMTALIPMVGAYIGAAIGFLLIVTDDPIKALLFILFIVILQQVEGNLIYPK 318

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +VG  + LP +  F  +  G   +G+ G+  G  + A I  +  +S+   ++ + +
Sbjct: 319 VVGESVGLPGIWVFAAITVGGGLLGISGILFGVPIFATIYKLVSQSVNERQKARRE 374


>gi|302381466|ref|YP_003817289.1| hypothetical protein Bresu_0351 [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192094|gb|ADK99665.1| protein of unknown function UPF0118 [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 380

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/340 (10%), Positives = 93/340 (27%), Gaps = 21/340 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + +  +  +LY+L+    P+  A+ +      +      +      +  + A +
Sbjct: 14  RNALVTLAVVAVGAALYWLRDILTPLAMAIFLMIMIDGVKRFIEDRTSLPDHWAGIAALL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V   F+  + F+         +              +    + + G            S
Sbjct: 74  LVTVAFVGAIAFIVNGAAGFFSDASGVSSGIGPRIDAIIADGAKLFGVTTPPTAQELIGS 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               +  +                F+++ L F         +++
Sbjct: 134 ID------------------LRGYLIGLAGQAQGVASGSFFVLVYLGFLLASQVGFRRKI 175

Query: 189 DSLGEHL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            ++           ++ + V   +       T+              + G+        +
Sbjct: 176 IAMFPEREQRNEALEVFQRVRGGVEGYLWVQTVTGAIICAAAWILMRVVGLEHAEFWTFV 235

Query: 248 TAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++  IP               L+     + A  L +   + LF+V   ++P + G   
Sbjct: 236 IFVVGFIPVLGGAVAGLAPPLFALVQFPTYWPALILLVGLQVILFVVGNMIQPRMQGENQ 295

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +  +     L    +  G++G+F+   L  +   I  E 
Sbjct: 296 NIDPVAVLLALALWGKMWGVVGMFLSTPLAVMAMAILAEF 335


>gi|150377734|ref|YP_001314329.1| hypothetical protein Smed_5665 [Sinorhizobium medicae WSM419]
 gi|150032281|gb|ABR64396.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 362

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 136/342 (39%), Gaps = 5/342 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +    +   ++  +I  + + L  F   +  A+I+   +  ++   +          AVI
Sbjct: 14  IIEIALALLLVSILIAATFWVLLPFVGVLTYAVILATATAGLFDRMVDLLNGRRRLAAVI 73

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-GIPVPRWLSDIPGGMWASELWT 124
                  + +VPL+FL      ++    + +  A+      +P W++ +P     +    
Sbjct: 74  FGAVAATITVVPLIFLCSSVASQLGVAGAWLSAASTRGIPNLPEWVAGLPLVGSKAAAAW 133

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L       +            ++    +   +  L+  + ++   I    F+      
Sbjct: 134 QELQREGLELLERYQPQLAAAGRWLLNLGTGLLLAVLEIFVGVVLAAI----FHASRTWA 189

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + ++   +      ++     K I    +G+   A+ EG++    + +AGVP  VAL
Sbjct: 190 LGFVSAIMVRIVGPKGPELLSAAGKAISGVAIGVIGTALLEGVLAWIGFVIAGVPGAVAL 249

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              T  +A+I  G  + +  V+I+L  +G    A  +  WG I L   D  ++P L+   
Sbjct: 250 AAATFFLAVIQIGPLLVWLPVAIWLGAEGQTGWAIFMVAWGIIVLMGTDNIVKPMLIARS 309

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +LP L  F G++GG+   G  G+FIG   +A++  + +  +
Sbjct: 310 GQLPMLVLFIGVIGGLAAWGFTGMFIGATTLAVLWTVLQAWL 351


>gi|330959281|gb|EGH59541.1| hypothetical protein PMA4326_12067 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 356

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 52/349 (14%), Positives = 113/349 (32%), Gaps = 12/349 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+    + + ++  +++ +    +  L G  APVL+ L++ F    + S    + +    
Sbjct: 9   MQRYFSDEEAVVLAVLLVLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSLLE-RLKMPEM 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +     + + +V LL L      +M  L +++         V   L +    + + 
Sbjct: 68  AAVGLVFTLFIGVLLVFLLVLVPLLWHQMITLFNELPGMFAKWQSVLLLLPERYPHLVSD 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E     +   +                    F+     + ++  + ++ + I +FFF +D
Sbjct: 128 EQVLLAIEVARGE--------VGKVGQLALTFSLSSLPVLVNLMIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I +           A   +++  + + I +   G  I     G V   A+   G+  
Sbjct: 180 RHMIGRWARGYLPRE-RALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              L ++  I  ++P    +  T     I L   G       L +   I   +    L P
Sbjct: 239 AALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGGQFIYLMIAHGIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 299 LLFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|123968466|ref|YP_001009324.1| permease [Prochlorococcus marinus str. AS9601]
 gi|123198576|gb|ABM70217.1| Predicted permease [Prochlorococcus marinus str. AS9601]
          Length = 347

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 111/346 (32%), Gaps = 3/346 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N     + +++ I L+ ++ L+ F   ++ +L+I      + +      +   +    +
Sbjct: 1   MNSSSYFKLVVILITLLIVWTLRDFLLLIICSLVISNIVCNLSNQIQKGLKIPRSISLFL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               +  +     + +    + E  E++  +  A      +     +    ++  +    
Sbjct: 61  VLAVISVIIFTIFILVLPPFIKEFNEILVDIPNALSKINILINTNLNKFNNLFYGKQSEN 120

Query: 126 HLSHPQSLKILSETFLKTNGIDFI---PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +     +  +      +     I    +             L +IF++        +  
Sbjct: 121 VIDIFSLINNVVTIPDVSTIAKAIQESFKNLINIAGNLGSGLLRLIFVLAVSLMISIEPK 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              + +  L    +   ++ I       + +    M I ++  GL+      +  V   V
Sbjct: 181 QYKENVLLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYVV 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +  +I  ++ +IP   P+      I + +  N +    +     I   I    + P ++ 
Sbjct: 241 SNALIAMVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGSYIIIQNIESYIIMPSIMK 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               L    T     G     G LGL +   L  +I V+ KES   
Sbjct: 301 KKANLLPGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESFKD 346


>gi|258654182|ref|YP_003203338.1| hypothetical protein Namu_4059 [Nakamurella multipartita DSM 44233]
 gi|258557407|gb|ACV80349.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 409

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 104/333 (31%), Gaps = 21/333 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++      ++   ++ +     P+  AL++  T  P+    + ++        ++  + 
Sbjct: 56  IMLGLAAGVVVAAGIHAVPDLIGPIFLALVLTITVDPL-RGMMIRRGAPRWLATLVVVIG 114

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +    ++         +  +             V  WL+                  
Sbjct: 115 VYAIIFGLVIAAAVGVAQFVGLMPQYADQLQTELTGVKSWLA-----------------G 157

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               +   ++ L +     I  + +      ++   S+ F+I  L F   DG   S+++ 
Sbjct: 158 MGVTQEQIQSMLSSVDKSSILSYIASLLSSVMNVFTSLFFIITLLIFLAVDGSVFSERMV 217

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                 R  F   TI      ++ G+A  + G+P+     ++  
Sbjct: 218 KHRPG--REPALNALGQFAAGTRKYFAVATIFGGIVAVLDGAALVIMGIPAAGLWALLAF 275

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I        L L+ G       + +   +  FI+   L+P  VG  + L 
Sbjct: 276 VTNYIPNIGFIIGLIPPALLGLLVGGPSLMIWVIVVYCVLNFIIQSVLQPKFVGDAVGLT 335

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              +F  L+     +G LG  +      L+  I
Sbjct: 336 TTMSFLSLILWAFLLGPLGAILAIPASLLVKAI 368


>gi|169829810|ref|YP_001699968.1| hypothetical protein Bsph_4383 [Lysinibacillus sphaericus C3-41]
 gi|168994298|gb|ACA41838.1| UPF0118 membrane protein [Lysinibacillus sphaericus C3-41]
          Length = 365

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 108/341 (31%), Gaps = 7/341 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I    +  LK  F P+L   +  + + PI      + +       +     ++ +  +  
Sbjct: 31  IFSPLVIILKAIFIPLLLGGVFYYVTEPIQRFLEKR-KFPRWASILTIVFGLIGIAGIFG 89

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +      ++ +LV    + +       + L+D         L   +     +  I   
Sbjct: 90  WIIGNPIAEQVNKLVKNAPMISSSISTSIQQLTDYVL------LNKDNFPQQVNDVIEKM 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                +      +    F    +   L  + +     F  +D    +  +          
Sbjct: 144 ANSVQDVAMVASKGFISFLQSIVSVSLLAVLIPFFFIFMLKDHEKFAPSIYKYFSGERQQ 203

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           + KK    +  V+RS   G   I+    L++   Y + G+   + L +    M MIP   
Sbjct: 204 WVKKTLSEIDDVLRSYIQGQLQISFLLALIMYVGYLIIGLEYSLLLVIFAFFMNMIPFIG 263

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P      ++ + +  +      + +   +   I    + P ++G  + +  L     ++ 
Sbjct: 264 PWIAFTPALIVAVIQDPILVVWVSVVTLVAQQIDSNFITPNVMGKSLDIHPLTVITIILA 323

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                G +G+ I     A++ VI           K+K + +
Sbjct: 324 AGNIAGFIGIIIAVPFYAVLKVIVSNIYDQRNAIKKKATKS 364


>gi|295397889|ref|ZP_06807951.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
 gi|294973869|gb|EFG49634.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
          Length = 340

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 95/316 (30%), Gaps = 9/316 (2%)

Query: 35  LSALIIGFTSWPIYSSFISKKE--------ESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +    + F        F                    +   + +  +    +  +     
Sbjct: 1   MLGAALAFILNLPLKFFEKHMTKLVGKYHTWFRIVGILFGYLIIAGVIAFIIFLVVPDLQ 60

Query: 87  LEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             +   +S+V          + +++SD P  +          +  +           +  
Sbjct: 61  ETLGSFISQVPAEINLLYNKINQYISDNPQILETVNQLDVDTNQLRDQLFSIVQSFTSGI 120

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +D     A        +  ++IIF    LF          + +       +  +   +  
Sbjct: 121 LDTTFSLAGNLVNGIFNAFIAIIFGTSILFKKETLTRQFKKIIYGTMPKHWANFTVNLGT 180

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              +       G    A+   +++     +   P  +++ V+T  MA++P    I    V
Sbjct: 181 EANQTFGQYVSGQVTEAVILLVLVFIGMTIFNFPFTLSISVLTGAMALVPIYGAIMGGVV 240

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             +L+   ++  A    ++  +   +    + P +VGG + LP +   F +       GL
Sbjct: 241 GFFLIAVVDVVQAIWFIIFIIVVQQVEGNIIYPRVVGGSVGLPVIWVLFSVTVSGAIFGL 300

Query: 326 LGLFIGPVLMALIAVI 341
            G+ +   + AL   +
Sbjct: 301 AGMLLSVPIFALCYKL 316


>gi|78186116|ref|YP_374159.1| hypothetical protein Plut_0228 [Chlorobium luteolum DSM 273]
 gi|78166018|gb|ABB23116.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
          Length = 356

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 71/339 (20%), Positives = 137/339 (40%), Gaps = 7/339 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            +    ++ F   +  A I    S P+++ F+          A +  ++++ +  +PL  
Sbjct: 20  ALFFAMIRYFLMAIFLAAIFSALSMPVHNRFLQWTGGRKGLSAGLTMLALILIGFLPLAL 79

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L     L+   + S+ V   +  +        +    +  EL        +   +     
Sbjct: 80  LLGVVALQAVHISSQAVPWLKQILEPAFLADQLRTLPYYPELV-----AYREDILQRVGE 134

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + +N    + +    F    ++     +  +  +FFF RDG  + +++            
Sbjct: 135 IVSNTGSLLFKKLFSFTYSAVNELFLFMIFLYTMFFFLRDGKPLLERVLYYLPMSDADQQ 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP- 259
            ++      V R+T  G  I+ + +G + G A  L G+ S +  G I  +++++P   P 
Sbjct: 195 -RLLDKFLSVTRATIKGTMIVGVVQGGLAGMALHLGGIESALFWGTIMTVLSVVPVLGPP 253

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +    I L   G    A  + L+ AI +  +D  LRP LVG   +L  L  FFG +GG
Sbjct: 254 IIWVPAVISLAASGRFPQAIGVALFCAIVVGQIDNILRPILVGRDTRLHELFIFFGTLGG 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +   GL G  IGP++ AL   +W+    A  ++   I +
Sbjct: 314 IGLFGLFGFIIGPIIAALFMTVWEMYGEAFSDSLRDIKT 352


>gi|315080225|gb|EFT52201.1| conserved hypothetical protein [Propionibacterium acnes HL078PA1]
          Length = 386

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 119/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L     + +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFILVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|195978174|ref|YP_002123418.1| permease [Streptococcus equi subsp. zooepidemicus MGCS10565]
 gi|195974879|gb|ACG62405.1| permease [Streptococcus equi subsp. zooepidemicus MGCS10565]
          Length = 375

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 110/337 (32%), Gaps = 13/337 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P L    + +    + S++               +       ++A  + + L +  +  
Sbjct: 40  LPFLYGAAVAYIVNIVMSAYERAYTYTLKPFPFAMKARRGLCMLLAYFTFISLIVWIISI 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L      A +  I        I   +       K      +        
Sbjct: 100 VIPDLIASISSLTQFDTRAIKEVISDLGHNKLIARAINYIGGDAKLTETITNYSQQLLKQ 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 160 FIGVLTG-ILTSVTAVASAIINVVISFVFSLYVLASKEELCQQATTLIDTYTG-KYAKTV 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++    R  F+  T+ A+  G +     ++  +P    +GV+ A  A+IP     
Sbjct: 218 HYLVGLLHSRFRGFFVSQTLEAMILGSLTAIGMFILQLPFAGTIGVLVAFTALIPVVGAS 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 278 IGAAIGFVLIMTQSMSQAVVFIVFLVILQQIEGNFIYPRVVGGSIGLPAMWVLMAITIGA 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              G++G+ +   L A +  + K+ I   +  +++ S
Sbjct: 338 ALKGIVGMIVAVPLAATLYQVVKDHIHKKQALQDRQS 374


>gi|299139198|ref|ZP_07032374.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX8]
 gi|298598878|gb|EFI55040.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX8]
          Length = 355

 Score =  109 bits (273), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 109/357 (30%), Gaps = 21/357 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE---- 56
           MRE+      I+ +  + I L   + L      V  + +      P+    +  +     
Sbjct: 1   MRESRATRSNILFFFAVLIALGLAWKLLNVLELVYVSALFAVVLMPVVQQIMRVRIRGWS 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
            S     V+   +V+    + L+      + +++   + +       +     L      
Sbjct: 61  PSRPIAIVVLLGTVLFALTLFLIVGLPPVVHDIQRFAADLPKRIPDLVARLHKLPM---- 116

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                           L + S      +    +  +      +++   L I+   I   +
Sbjct: 117 -------------ADKLGVDSLAQRSEDLASSVATYLLASLPLWMKRILDIVTAFILCIY 163

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F  +G        S           K        +    LG   + +  G+     +   
Sbjct: 164 FMLEGEYAYYYFLSFFTASERTRLAKTLITAEHRMSKWLLGQGALMLILGITSTCVFGAL 223

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V   V LGV+  +  +IP    +    +   +    +      +F++ AI + + +  L
Sbjct: 224 HVRYFVLLGVLMGLFNIIPVAGGVITILLVASVAALDSWSKMLGVFIFYAIYVQLENGFL 283

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            P ++   + L  L     L+ G    G+ G  +     ALIAV+  E  +     +
Sbjct: 284 TPRIMKTSVNLMGLSVLVALLAGTALAGIPGALVSVPTAALIAVLMDEYFVKADGEQ 340


>gi|324998560|ref|ZP_08119672.1| hypothetical protein PseP1_07332 [Pseudonocardia sp. P1]
          Length = 404

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/310 (13%), Positives = 89/310 (28%), Gaps = 17/310 (5%)

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                 +    +    +  V  +      L  +    +    +L+ ++ ++      +  
Sbjct: 94  QWLHDHRV-PRSLATGLVMVGGLAALGGLLTAVVNTLVDGTSDLIGQLTISVASLQGLVD 152

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
                           + L   Q                 +   A        +      
Sbjct: 153 ATPFDVNVEQLGTQLLQTLQDNQ---------------QTLTSGAVSTAATVGEVLAGFA 197

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
             + AL F   DG  +   L  L             R     +        ++AI + + 
Sbjct: 198 LCLFALIFMLYDGSRLWSFLRLLAPARRRERVDVAGRRAFASLVGYVRATVLVAIVDAIG 257

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +G   W+ GVP  + L  +  + A +P     ++     +  L+   I  A  +      
Sbjct: 258 IGLGLWITGVPLALPLTALVFVGAFVPIVGAVLTGGIAVLIALVANGIGTALVVLGVVLA 317

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    L+P L+G  ++L  L     +  GV   G+ G  +   LMA++    +    
Sbjct: 318 VQQLESHVLQPVLMGRAVRLHPLAIALAVAAGVVIAGITGALLAVPLMAVLTAAVRSLAA 377

Query: 348 AIKENKEKIS 357
             +   E++ 
Sbjct: 378 PHEVAPEQVD 387


>gi|262049357|ref|ZP_06022231.1| hypothetical protein SAD30_1655 [Staphylococcus aureus D30]
 gi|259162589|gb|EEW47157.1| hypothetical protein SAD30_1655 [Staphylococcus aureus D30]
          Length = 361

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFRNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGERKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|256377888|ref|YP_003101548.1| hypothetical protein Amir_3823 [Actinosynnema mirum DSM 43827]
 gi|255922191|gb|ACU37702.1| protein of unknown function UPF0118 [Actinosynnema mirum DSM 43827]
          Length = 390

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 95/325 (29%), Gaps = 14/325 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + +  +  +  +++ + +  L     PVL  L+I    WP      +K        A I 
Sbjct: 26  STRLALVAIGAYLLGLLIGKLWVVVMPVLLGLLITTVLWPPARWLRAK-GLPPALAASIV 84

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +    +  +         ++      A                  W S      
Sbjct: 85  LLLGLGVLGGMIALISSSIASGADDIADSATEALGQARQ------------WVSGPPLNL 132

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I          I  I               ++ +  ++  FFF +DG     
Sbjct: 133 GDGQFDGLIQKGVQQLQASIGSIANSLLTGVGTVTSGVVTGLVALLLAFFFVKDGPRFIP 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L +L       +   +   V   +        I+++ + +++G      GVP  V L  
Sbjct: 193 WLRALVGERAGGHLAIVLDRVWGTLGDFIRTQAIVSLFDAVLIGLGLVFLGVPLAVPLAA 252

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T +   IP     I+     +  L+      A  + +       I    L+P L    +
Sbjct: 253 LTFLGGFIPIVGAFIAGAMAVLVALVSNGFTAAVIMLVVVVAVQQIEGNVLQPILQSRSL 312

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFI 330
           KL        +  G    G+ G F+
Sbjct: 313 KLHAAVVLLAVTAGSSLYGIAGAFL 337


>gi|327331068|gb|EGE72808.1| putative permease [Propionibacterium acnes HL097PA1]
          Length = 386

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 120/352 (34%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +             W ++       
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQ------------WLAKSPLHINE 147

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +             I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 148 AQLTHLMQKAEAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 379


>gi|86142667|ref|ZP_01061106.1| permease [Leeuwenhoekiella blandensis MED217]
 gi|85830699|gb|EAQ49157.1| permease [Leeuwenhoekiella blandensis MED217]
          Length = 367

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 117/351 (33%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     +  ++  LY ++     +  A +I     P+ +    + +  +   A+   +
Sbjct: 14  RALGILGGIVFVIWFLYQIQAVLIFICIAAVISLIGRPVVNFLKHQCKFGAVAAAITTLL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+C+    L       + + + +           I       +I               
Sbjct: 74  MVICVISGILALFIPILIDQSEHI---------SKINFEEVKHNINRLNVEFSRAMGVDQ 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +    F+K   I  IP F +     F    + ++ +I   FF  +D   +    
Sbjct: 125 VTLIEGLKQSDFIKNFDISVIPTFINSILGNFSSLIVGLLSVIFISFFLLKDSHLLLDSF 184

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                      ++++     +++   FLG+ +  +    +         +P+  A+ +  
Sbjct: 185 LVFANTGEERRFRRVFHKTKQLLSRYFLGILLQLMILFTIYAILLVSFQIPNAFAIALFC 244

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIF---------NATCLFLWGAIELFIVDKTLRPF 299
           A++ ++P   P+    V + L+I GN               +F+   I   I +   +P 
Sbjct: 245 AMLNVVPYIGPVVGGVVMMLLVISGNFTADFQEVILPKMIYVFIGYCIAQLIDNFINQPL 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  +V      G+ G+ +       I VI KE +   K
Sbjct: 305 IFGSSVKSHPLEIFLVIVIAGLIFGIFGMVVAIPAYTAIKVIAKEFLSEYK 355


>gi|152980582|ref|YP_001353231.1| hypothetical protein mma_1541 [Janthinobacterium sp. Marseille]
 gi|151280659|gb|ABR89069.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 390

 Score =  109 bits (273), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 108/336 (32%), Gaps = 13/336 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  +     + +L   + FF P+L  + I +T  P+       +        
Sbjct: 34  PVNARGVALTIIATVAFVFALSVAQAFFIPLLFGIFIAYTLNPLVVWLERIRIPR----- 88

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + T  V+   +    F       E   ++  +  A Q      + L    G        
Sbjct: 89  WLGTSVVILAIVCSAAFTVNNLRDEFNSILVSLPTATQKLARAVKNLQRGQGSTIQQMQA 148

Query: 124 TKHLSHPQSLKILSETFLKTN----GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                   + +      +  +     +    ++     +  + +      ++  +FFF +
Sbjct: 149 AATEIEKATNQAAGGRPVVKSPVEQSVFNFSQWLWAGSVSVVGFLGQATMVMFLVFFFLQ 208

Query: 180 DGFSISQQLDSLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            G    ++L  +  H         +I   +   I++    + +  +  GL++  A    G
Sbjct: 209 SGDMFRRKLVKISGHSLHTRKITVQILDAINTSIQNYMFMLLVTNVLFGLLMWGALRWIG 268

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKT 295
           + +  A  +   I+ +IP   P+   A +     +  G   +   +     +   +V   
Sbjct: 269 LENAGAWALAAGILHIIPYFGPLLIMAATGVTAFMQFGTFSSVLAVGGATLLIATVVGTF 328

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +  ++ G   K+  +  F  L+      G+ G+ +G
Sbjct: 329 VTTWMTGRIAKMNAVAVFVSLLFWAWLWGICGMLLG 364


>gi|226357602|ref|YP_002787342.1| hypothetical protein Deide_1p01450 [Deinococcus deserti VCD115]
 gi|226319593|gb|ACO47588.1| Conserved hypothetical protein; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 430

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 89/304 (29%), Gaps = 11/304 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P+                +   + V+    +         + ++ ++   +  +     
Sbjct: 57  NPVARFLERWM--PRAAAGLATVLLVLAALALLGFLAVPPVVTQVGQISGSLPSSVPELE 114

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                         A   +           I       T       R         L   
Sbjct: 115 KRIN---------AAIAGYPSISGALSEDTIHGLVQQATTFTTKAARALPNLVGTALGGL 165

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
              +  ++ + F   +   +                 +    + K + +      +I + 
Sbjct: 166 FLALVTLVMVVFVLSNPVPLVNGALGAVPPRHRLKAARALAQILKQLGAWGRATVLIMLV 225

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G  +     L GV + +  G++ A+  +IP   PI  +   I   +  +   A  + ++
Sbjct: 226 TGGFMALGLMLLGVENWLVFGLLAALGELIPNLGPIVASLPPILFTLADDPQKAVYVAVF 285

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   +    L PFL+GG  KL  L    G++      GL+G F+    + ++  +++E
Sbjct: 286 SLVFQQVEGFILAPFLLGGAGKLHPLSVTVGVLLFGSVFGLVGAFLTVPFLIILKAMYQE 345

Query: 345 SIMA 348
             + 
Sbjct: 346 FYLQ 349


>gi|254390361|ref|ZP_05005578.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294813840|ref|ZP_06772483.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442258|ref|ZP_08216992.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|197704065|gb|EDY49877.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
 gi|294326439|gb|EFG08082.1| Integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 367

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 109/336 (32%), Gaps = 22/336 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  ++  +  V+L+ ++ F     PVL AL+      P Y       + S++  A +  
Sbjct: 17  AVILLLAGVGAVALWLVQTFRIAVTPVLLALLGTALLGPFYRRL-RAMKVSASLAAGLTC 75

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            +V+C+    +  +    +    ++++ +  A                            
Sbjct: 76  AAVVCVVGGAMYVVVKALIDNGPQILASLRDA-----------------AMGITEHFGAA 118

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +   ++   L                 +      + +  ++ +FFF RD    S+ 
Sbjct: 119 GTSLADLAVNAKELLAKFGGTAASGVISGLSVVGQGIATAVLALLLIFFFLRDSDRASKL 178

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             S+         +++ R   + +     G T IA+ + L++     +  VP  V LG +
Sbjct: 179 AHSVAPGHSGQMVEEMGRRAFEAVEGFMRGTTFIALIDALLITVGLLVLRVPGAVGLGAL 238

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             + A IP     IS     +  L       A            +    L+P +    ++
Sbjct: 239 VFVGAYIPYLGAFISGAVAVLVALADRGWVIALWALGVVLAVQVLEGHVLQPMIQSRTVQ 298

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +        +  G    G+LG+ +   ++A    + 
Sbjct: 299 MHPAVVMLAITAGAGVAGILGMLLAVPVVAAAFGVI 334


>gi|317133678|ref|YP_004092992.1| sporulation integral membrane protein YtvI [Ethanoligenens
           harbinense YUAN-3]
 gi|315471657|gb|ADU28261.1| sporulation integral membrane protein YtvI [Ethanoligenens
           harbinense YUAN-3]
          Length = 357

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 109/341 (31%), Gaps = 1/341 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+           + + +  V + FL G+  P +   +I     P               
Sbjct: 7   RKKKFLLNTATFTVAIALGAVLVKFLLGWILPFVFGFLIAAAVQPAVRFAHRHWRLPKRA 66

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  + ++   +     +    ++    +V ++    Q  +      +D       S 
Sbjct: 67  AGLLLALLLILGLLGICAVILARLIMTATPMVQQLPQYLQALVNQVNLTTDSLTNSARSV 126

Query: 122 LWTKHLSHPQSLKILSETFL-KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 +    ++ LS   +  +   + +            +    I   I++  FF  D
Sbjct: 127 SPVLAQNISNMMEGLSTELMKVSTYANQLLALGKSLLASLPNVLFGIAVTILSACFFSMD 186

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   L       +     ++ R   + +        ++ +   L L     L  +P+
Sbjct: 187 YDIIRGFLLRQLPERYTDIAVEVKRYFFRSVGGMARAYALLMLITFLELTCGLMLLRIPN 246

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + V+ A++ ++P     +       + +                 +  V   L P +
Sbjct: 247 AILVAVLIAVVDILPVLGTGTIMVPWAIITLLFGNIPLAVGLTVLYAVIATVRTILEPKV 306

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           VG  I L  L T F +  G++  G+ G+ + P+++ ++  +
Sbjct: 307 VGDRIGLYPLVTLFAIFLGLKFAGVAGMLLFPLIVLILKRL 347


>gi|170078569|ref|YP_001735207.1| hypothetical protein SYNPCC7002_A1964 [Synechococcus sp. PCC 7002]
 gi|169886238|gb|ACA99951.1| Protein of unknown function PF01594 [Synechococcus sp. PCC 7002]
          Length = 373

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/350 (14%), Positives = 130/350 (37%), Gaps = 6/350 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+  ++   ++  +   ++L  L+ L+     ++ A++I  T  P+ +            
Sbjct: 4   RKITISFSTLLLIVGAVLLLFLLWQLRSLLVVLMIAVVIAATLAPVIT-IAESFRVPRWL 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +   + ++ +    +L +    + ++++L+ K+ L  +    + +  +          
Sbjct: 63  AVIGVYLGLISILTGVVLLIGPTVVDQIQKLIRKLPLYLEIVGVLVQSWA----VRLGMT 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    +   + + T         +   +       +   LS+I   +   +     
Sbjct: 119 EPQVLEQLNRLFDLQALTAWAFRSSQELLIRSYGITRGVIGGILSLILAFMLSGYMLSGS 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PS 240
             + +   SL    +     +  + + + + S   G  +++   G+V+     L G+   
Sbjct: 179 DKLIKGFVSLFPAPWDEQLLEQVQPMSERMGSYIQGRIVVSGILGIVITIGLRLLGISEL 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LGVI A+  +IP   P+     ++ + I    +    + L   +   +    L P L
Sbjct: 239 ALGLGVIAAVTNLIPFFGPVLGAVPALIVAIAQGGWTFLSVLLLFTLIQNLETYVLDPLL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG  +K+  L     ++GG + +G+LG  I P  +A  AV+     +  K
Sbjct: 299 VGSSVKVNPLYQLLAVLGGAQVLGILGAVIVPPWVAGAAVLLDNLYLKTK 348


>gi|149189367|ref|ZP_01867652.1| hypothetical membrane spanning protein [Vibrio shilonii AK1]
 gi|148836725|gb|EDL53677.1| hypothetical membrane spanning protein [Vibrio shilonii AK1]
          Length = 354

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 126/339 (37%), Gaps = 5/339 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I  ++      L+ F   V+   II    +P+     +K   S    + + ++  + L +
Sbjct: 21  ISILVYWCFSILRPFMMLVVWGGIIAVALYPVALWLHAKCRISKGKASGLLSLIGVLLLL 80

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +PL++L         E+ S++           + + ++P           H S      +
Sbjct: 81  IPLVWLSSGLYTGGTEVYSQLQDGTLQVPRPTQAVKELPVVGEKIYAAMYHASTNLEGAM 140

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +    +    +      F    L + +S I   +    F  +  +  +  + +   L
Sbjct: 141 AKYSEQIKSLATTLAGAVGSFAGGLLQFIVSTIIAGV----FMANAENCQKAFNKVANRL 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 ++  +    +RS   G+  +A+ + ++         VP+     +   +MA+I 
Sbjct: 197 TNGKGAELVNLSKSTVRSVVQGVLGVAVIQSIMAAVGMAFVDVPAIGLWALAVLLMAIIQ 256

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               ++   V  Y+    +   A    +W  I     D  L+P L+     +P L    G
Sbjct: 257 LPPILALIPVIAYVFGTQSTTAAVLFLVWCVIVSG-SDAVLKPMLLSRGSDIPMLVLLLG 315

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +GG+   G++GLF+G V+++L   ++   +   ++ K+
Sbjct: 316 ALGGMAMSGIVGLFVGAVVLSLSYQLFVSWLEEPEKAKD 354


>gi|75676096|ref|YP_318517.1| hypothetical protein Nwi_1905 [Nitrobacter winogradskyi Nb-255]
 gi|74420966|gb|ABA05165.1| Protein of unknown function UPF0118 [Nitrobacter winogradskyi
           Nb-255]
          Length = 379

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 89/338 (26%), Gaps = 10/338 (2%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L   ++       + + ++ G     +          + T   VI  +    L    ++ 
Sbjct: 37  LALAWYSSATLLMLFAGVLFGVFLTAMADLLRRVFGGNQTLRLVIVCILFTGLLSGVVVL 96

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWL----------SDIPGGMWASELWTKHLSHP 130
                  +   L S +     +                  +  P             + P
Sbjct: 97  GGATIAQQATALSSTLRAQLGNARDFLEKQGVDTSFLNVGARTPSTDNGVTPIPAPSASP 156

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                L +     +G   I     +      +   +   +I                +  
Sbjct: 157 SRGPKLPDASTIASGTGAIVSQTIKILARVFEGVGNFFIVIFLGLLLAAQPKVYRDGILR 216

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       +   V + +R   LG         L+      L G+P  + LG IT +
Sbjct: 217 FVPRQRLPEAASLIDDVSETLRRWLLGQMATMASLFLLTWIGLTLIGIPGALVLGFITGL 276

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP    I   A+ +   +   +      F+      F+    L P +    I +P  
Sbjct: 277 LTFIPNIGAILAGALIVLASLGSGLTAIISAFMLYLAVQFLEGNVLTPLIQRHAISIPPA 336

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             F   +      G+ GL +   L+A+I V+       
Sbjct: 337 TLFAAQIFLGVLFGVWGLALALPLIAVIKVVLNHVWPD 374


>gi|16331491|ref|NP_442219.1| hypothetical protein sll0060 [Synechocystis sp. PCC 6803]
 gi|8928468|sp|Q55153|Y060_SYNY3 RecName: Full=UPF0118 membrane protein sll0060
 gi|1001147|dbj|BAA10289.1| sll0060 [Synechocystis sp. PCC 6803]
          Length = 344

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 39/328 (11%), Positives = 103/328 (31%), Gaps = 12/328 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L  L + +      + A ++ F                  +   +  ++   +  V  
Sbjct: 29  VLLQILDYFQSPLRIFIIANLVAFILGYPVRWLQRYPRLKLPYAVALVLLTTAIILAVIG 88

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L +    + +++ ++  +   N  G      L ++         +        +      
Sbjct: 89  LLVIPKLVDQIRTVLQLLPHLNALGDRHLESLDNLSNQWEIPTNFRAWGRELSNEFPNQ- 147

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  I  I        +      +   F+ I   +    G +    +       +  
Sbjct: 148 -------IRSITNQLINLLIWTAGSLVEAGFIFIMTVYLLLRGQTFWDGIFRWLPIDWRH 200

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++    +    ++ ++G   +A   G+ L  +  +  VP  +  G+    MA  P G 
Sbjct: 201 KVRQ---RLRHSFQNYYIGQATVAALLGVSLIISLSIFQVPLALLFGMFVGFMAFFPFGG 257

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             +   +   +    +I+    +     +   +V+  L P L+G    +  +     L+ 
Sbjct: 258 G-TSIVLISIIASFQSIWLGIKVLAIATVVDQVVENGLAPKLLGRVTGVHPVWILLSLMI 316

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESI 346
           G +  GLLG+ +   + + I  +  + I
Sbjct: 317 GAKVAGLLGILVAIPIASFIRDMLNDFI 344


>gi|297571569|ref|YP_003697343.1| hypothetical protein Arch_1004 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296931916|gb|ADH92724.1| protein of unknown function UPF0118 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 423

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 110/338 (32%), Gaps = 17/338 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+  +++  I    +        V+ AL++     P+ S         S   A IA +
Sbjct: 27  RLIVVTIVLAGIGWLSFQFYTLIISVMVALLLAVILEPLASGLSKHLRFGSGLAAAIALL 86

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++    V +       +  + E+  ++       +                     ++ 
Sbjct: 87  TLLAFLSVLIWGSSVGIISGVSEVSDQIRAGVSSIVQ-------------EVTQRFPNIG 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    S     T     I       G          + ++  LFFF +DG  +   +
Sbjct: 134 AYVNEAWNSLQGTLTTNSGRILGGVVAVGSTVTSLITGFVLVLFTLFFFLKDGRRLWHWM 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV-- 246
             L    +     +       ++ +      I+A+ + + + +   L   P  +A  +  
Sbjct: 194 VRLLPLQYQNSANEAGIRAWVMVGNYTKTQAIVALVDAVGIAAIALLLNTPFSLAFPIGV 253

Query: 247 ITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           I  + A +P        F AV I L+   + F A  + L   +   I    L+P L G  
Sbjct: 254 IVFLAAFVPIVGAFVSGFVAVIIVLVNTQSFFMAAMMMLGILVVQQIEGNLLQPVLQGNA 313

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + +  L     + GG    G++G      ++A +  I 
Sbjct: 314 LNIHPLAIVLIVAGGSSVAGIVGALFIVPIVAAVNAIV 351


>gi|212638587|ref|YP_002315107.1| putative permease [Anoxybacillus flavithermus WK1]
 gi|212560067|gb|ACJ33122.1| Predicted permease [Anoxybacillus flavithermus WK1]
          Length = 354

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 95/322 (29%), Gaps = 11/322 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L+       P L A  I +   P+      +         +             +    
Sbjct: 37  FLHVFIKIMTPFLIAAFITYLLHPVVEYVHKR-GMPRALAILSIYALFFGGIGFAVYKGI 95

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++++L   + +  +       ++ +           T    +    +I +     
Sbjct: 96  PLFIAQLEDLNKSLPMFVRTYEQWTNYIHE----------ETVTWPYDVHQRIEAMMTEV 145

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            + I      A       ++  +    +    F+  +D   I +         +     +
Sbjct: 146 ESFISEAVTGAIIGVKQLINRIIVFFIIPFIAFYMLKDVELIKKAAWEWTPKKWRYKGMQ 205

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               V + +     G   +    G     ++WL  +   + LG+I  +  +IP   PI  
Sbjct: 206 FLHDVDQTLGGYIRGQLFVCFLIGTAAALSFWLIDMKYPLLLGIIVGVTNVIPYFGPIIG 265

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +  +    ++           +  FI    L P +VG  + L  L   F L  G   
Sbjct: 266 AIPAAIIAATVSVNKLLLTVGIVFLLQFIEGNILSPLIVGKSLHLHPLMIMFSLFVGGEI 325

Query: 323 MGLLGLFIGPVLMALIAVIWKE 344
            G++GL +   ++A+    +  
Sbjct: 326 GGIIGLIVAVPIVAIAKATFMH 347


>gi|187478932|ref|YP_786956.1| membrane protein [Bordetella avium 197N]
 gi|115423518|emb|CAJ50053.1| putative membrane protein [Bordetella avium 197N]
          Length = 371

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 123/346 (35%), Gaps = 5/346 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  ++       + F   +L ++I+  T  PI+              +++  V  M  F
Sbjct: 26  LIGGLVYWCYRVAEPFIGLLLWSMILAVTLAPIHERLARWLGGRPKSASLLLVVLTMLAF 85

Query: 75  IVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           ++P   L       +  L  +            P ++S++P             +     
Sbjct: 86  MIPGALLASSLAETVPRLFHQAEGEPALRIPDPPAFISNLPLVGGQLHDAWAAATENIET 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +       T    ++   A+  G  FL +  +I    + L +              +  
Sbjct: 146 VLKPLQPALTGAAKWLLNSATSAGAGFLIFLAAIAIAGLVLIYGPHSKRFADDIASRIAG 205

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
              P     +  +    IR+   G+  +A+ +  + G    LAGVP      ++   + +
Sbjct: 206 ---PQRGHDLILLTVSTIRAVAQGVIGVALIQAALGGLGMLLAGVPGAGIWAIVALAVCI 262

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +          V+IY+ +  +   A    +W  I   +    L+P ++   I +P     
Sbjct: 263 VQLPILAVLGPVAIYVFLNNSTPVAIIFAIWSVIVALLE-NVLKPLMLARGISIPLPIIL 321

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +GGV   GL+GLF+GPV  AL  V++ + +         +SSN
Sbjct: 322 IGALGGVLAAGLVGLFLGPVGFALGYVLFMQWVREPLAGPPVMSSN 367


>gi|255535413|ref|YP_003095784.1| hypothetical protein FIC_01274 [Flavobacteriaceae bacterium
           3519-10]
 gi|255341609|gb|ACU07722.1| hypothetical protein FIC_01274 [Flavobacteriaceae bacterium
           3519-10]
          Length = 354

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 62/345 (17%), Positives = 143/345 (41%), Gaps = 16/345 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++ Q  + +  +F++ + L+ L  F + VL A+ +   +   Y     +K+ +S  +  +
Sbjct: 8   ISVQKALIFTALFLVALILFELNYFMSGVLGAVTLYVLTRNFYLRLTEEKKWNSNLVITL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               V+  F VPL  +    + ++ E+VS      +    V  +L +             
Sbjct: 68  IIFLVIITFAVPLWIILEILIPKINEIVSDREAIVEKYNAVRVFLEN------------- 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              + +   +          ++ +  +             +I   +  L+F  +    + 
Sbjct: 115 -NQYTKRFDLQLSNERIMQAVNKVISYIPSTLNWVGQMLGNIFVALFILYFMLKQSRIME 173

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q+   L         K   +    +IRS   G+ I+ + +G++    Y++ GV + +  G
Sbjct: 174 QKFKELLPVS-RESKKYFIQHNAALIRSNAYGIPILGLSQGIIAIIGYYIFGVENAIFWG 232

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++T   +++P     I +  + IY +  G++ N   L  +  + +  +D  LR  L+   
Sbjct: 233 LLTGAASIVPVVGTMIVYLPICIYQVATGDVNNGLFLAGFCLLFVGGIDNVLRLTLLKKM 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             +  L T FG++ G++  G++GL  GPVL+++  ++++   M  
Sbjct: 293 ADIHPLVTVFGVLLGLQMFGVMGLVFGPVLLSMPGILYRIFEMER 337


>gi|329901094|ref|ZP_08272713.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
 gi|327549232|gb|EGF33817.1| putative membrane protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 360

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 106/336 (31%), Gaps = 11/336 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +      +  + +   + +L   + F  P+L  + + +T  P+ +     +      
Sbjct: 4   RIHVDARGLSLAIIAVVATIFALQSAQKFLIPLLCGIFLAYTLNPLVAWLERCRVPR--- 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-- 119
             V+ TV VM +    +  +      E + ++  +  A+                +    
Sbjct: 61  --VVGTVLVMLMLSGSITAVGTTLADEFQSIMQTLPEASHKVARAMLRNESGQPSVIQRM 118

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               ++  S     +  S +         +        M  +      + ++  +FF   
Sbjct: 119 QAAASEIESATSGNRSSSRSLPSKEPTVRVSDLLLAGSMGAMGLLGEAVVVLFLVFFLLL 178

Query: 180 DGFSISQQLDSLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            G +  ++L  L             I   +   I+     + +      +++  A+   G
Sbjct: 179 SGDTFKRKLVKLTGPSLTNKRITVHILDAINSSIQKYMSMLLVTNALLAVLMWIAFRAIG 238

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKT 295
           + +  A  V   ++ +IP   P+  T  +  +  L  G +     +         +V   
Sbjct: 239 LENAGAWAVAAGLLHVIPYFGPLLLTVAAGLMAFLQFGTLGPVLLVIGSSLGVSTLVGTL 298

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +  ++ G   K+     F  L+      G+ GL +G
Sbjct: 299 VTTWMTGRIAKMNPAAVFIALLFWGWLWGVWGLLLG 334


>gi|294501508|ref|YP_003565208.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
 gi|294351445|gb|ADE71774.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
          Length = 369

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 107/336 (31%), Gaps = 10/336 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+   +   Y++     P + A  I F   P+ + F  K         +++ V +  L  
Sbjct: 18  IIAASIFLSYYVSSLIYPFIIACCIAFFINPMVNLFELKLRLPRYLAVLLSMVLIFSLLA 77

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L    +     L   V    +  +     ++      +   + +   +     + 
Sbjct: 78  GLITLLITEIIAGSTYLAKVVPTNFKEVVIFIENIATEQILPFYERITSMFNNLNTGQQA 137

Query: 136 LSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              + +K  G          +  + +       +  +    IIF ++A FF  +D + + 
Sbjct: 138 TILSNIKGVGNHIAQTVGDFLQNVLQSIPVLLSVLPNAATVIIFSLLATFFISKDWYKLM 197

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +             + +   +   +         +     +++     +  V   + + 
Sbjct: 198 AKSSVFIPKKVRENGQTVVVELKNALFGFIKAQLTLISITTIIVLFGLLVLRVDYAITVA 257

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++ ++P           +      +  +           + +  + + P ++   I
Sbjct: 258 LLIGLVDILPYLGTGLVFVPWMIYAFATDNVSFAVGLSVLYAVVLVQRQIMEPKILSSSI 317

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  L T   L  G + +G  GL +GPV++ ++  +
Sbjct: 318 GLDPLATLIALFVGYQLIGFFGLIVGPVILVILKTL 353


>gi|222150988|ref|YP_002560141.1| hypothetical protein MCCL_0738 [Macrococcus caseolyticus JCSC5402]
 gi|222120110|dbj|BAH17445.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 349

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 105/332 (31%), Gaps = 4/332 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + ++  + I+   +  I L+  YF+     P++ ALI+     P       K + +  
Sbjct: 1   MFKRLMTKRNIVFLAVAVIALLFFYFIVPISIPLIVALILALMIEPFVKLLEQKVK-NRK 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +   I   S++   ++ +       +  + +    +     + +            M   
Sbjct: 60  WSVTIVYTSILSFILLCMYLFLTKLIQHIIQFSKDLPDKMNNILNAWTIFEARLAKMIPE 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +        Q         +            +       +  +S +  ++ALF F  +
Sbjct: 120 SVSNALFDETQKFLFNLRDAILNYFN---AERITNLVASLPETFISGLVFLVALFLFMLE 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++   +              I + V   +        I++    L            +
Sbjct: 177 IPNMHTFVRKHTYDKTYEKAMYIWKRVSSSVFGMLRAAFILSGITWLFTFIGLLFITPKN 236

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + L  I  ++ ++P       T             +     +  ++ L +  K L P +
Sbjct: 237 ALVLSFIICLVDLLPILGATGVTIPWALYAYITGDPSLAVKLILLSVFLLVQRKVLEPKV 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           +G  + L  LPT   +  G++ MG +G FIGP
Sbjct: 297 MGKGVGLSPLPTLIAMFIGLKLMGFIGFFIGP 328


>gi|330808075|ref|YP_004352537.1| putative permease protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376183|gb|AEA67533.1| putative permease protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 356

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 116/349 (33%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ +    + ++   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLE-RLRLPGAV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M L +V ++ +      ++  L +++         V   L +    + + E
Sbjct: 69  AVGLVFALFMGLLLVFIIVIVPLLWHQLVTLFNELPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLQAIEVVRGQI--------GKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +         A   ++++ + + I +   G  I     G V    +   G+   
Sbjct: 181 EMIGRWVRGYLPRE-RALITRVAQEMNRQIANYIRGKVIEIFICGGVTYIGFVALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L     I   +    L P 
Sbjct: 240 ALLALLVGISVVVPYVGTVVVTVPVALIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPSK 348


>gi|182679902|ref|YP_001834048.1| hypothetical protein Bind_2995 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635785|gb|ACB96559.1| protein of unknown function UPF0118 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 377

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 101/336 (30%), Gaps = 13/336 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++  + +   L   Y       P++ A+++     P                  +  
Sbjct: 34  NTVLLAGLFLIAALSGAYVAAEVVLPLIFAIVLKLLLQPGMRFLERYYIPRHLAAFFLIL 93

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +  +             K     +            +LS     +         +
Sbjct: 94  AVLGAILGIGAAVSGPS-----KAWFEHLSEGLPLLRERLLFLSHPFELLDTLRNKMDGM 148

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            H   L +     L  +  + + R    F     +  L + F+++    F      + + 
Sbjct: 149 GHSGQLSVSLAKSLSESLQETLLRTTRHFASGLFEMILILFFLLVFGDMF------LRRL 202

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ L           +S+ +   I +  L +TI+    GL      W  GV   +  G+I
Sbjct: 203 VEILPRFKDKRQVVDLSQQIESNISAYLLTITIMNAAVGLATAIVMWACGVGDPILWGLI 262

Query: 248 TAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++  +P   P     V +   LL    ++ A        +   +  + + P L+    
Sbjct: 263 AFLLNFLPIMGPFFGVGVFLVAGLLTIPQLWLALLPAGLYLLIHIMEGELITPMLLARRF 322

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  +     L+      G+LG  +   L+A+  +I
Sbjct: 323 TLNPVLVIVSLIFWFWMWGVLGAILSVPLLAMTKII 358


>gi|330879900|gb|EGH14049.1| membrane protein, PerM family [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964846|gb|EGH65106.1| membrane protein, PerM family [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331017405|gb|EGH97461.1| membrane protein, PerM family [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 356

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 109/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APVL+ L++ F    +      +       
Sbjct: 10  QRYFSDEEAVVLAVLLFVAFTLVLTLGGMLAPVLAGLVLAFLMHGLVGLLE-RLRMPEVA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     +   +V LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGVVFTLFIGALLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HLIGRWARGYLPRE-RALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   +   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWSDQFIYLMIAHGVIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|300771905|ref|ZP_07081776.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761291|gb|EFK58116.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 354

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 132/328 (40%), Gaps = 18/328 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +    L A+ +       Y     +++ + + ++++  +  +   + P   +  Y  
Sbjct: 31  LSYYLPGFLGAVTLYILFRNAYFKMTEQRKWNKSLVSLLMVLLTVVFIVFPTWGIINYIT 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            EM  L+       ++   +  +++ +P            L                N +
Sbjct: 91  PEMTNLIGDKNDIIKNFNSIKDYIATVPLLKNVDLSEEALL----------------NIL 134

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + R+         +  ++++  +  L+F       +   +        P    ++   
Sbjct: 135 QKLTRYLPSILNSIAEVGVNLLVSLFVLYFMLVHSKRMESTIYHAIPFS-PQSKNELWTE 193

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
           V  ++RS  +G+ I+A+ +G V    YW  GV + +  G +TA+  +IP    ++    +
Sbjct: 194 VNMMVRSNAIGIPILALCQGFVAMVGYWFLGVENPILWGGMTAVSTIIPVLGTMTVYVPL 253

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SI+L   G I N   L L+G I +  +D  LR  ++     +P L T FG++ G++  G+
Sbjct: 254 SIFLFANGEIGNGIGLLLYGFIVIGGIDNVLRFTILKKLGDVPPLITVFGVLLGLKLFGM 313

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           LG+  GP++++ + V+ K        + 
Sbjct: 314 LGVIFGPLILSSVGVLLKVYSNEYGRSN 341


>gi|229541157|ref|ZP_04430217.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
 gi|229325577|gb|EEN91252.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
          Length = 385

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 44/350 (12%), Positives = 108/350 (30%), Gaps = 11/350 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE----------SSTFLAVIATVS 69
           IL +L  +     P+L    I +    +                          + + V 
Sbjct: 29  ILGALGAIWHVAFPLLLGAAIAYVLNILMKKVERVYFPNAQNKFIRATRRGVSILFSFVV 88

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM-WASELWTKHLS 128
           +  +  + +L +    +     L+  +       +   +  S     +          L 
Sbjct: 89  IFGIVSILVLIIVPQLIQAFTVLIDAIPRVYARSLDYFQSNSGKYSSLGKFIASLQVDLD 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   S + + T  ++     A       ++  ++IIF I  L    +      + +
Sbjct: 149 AVTKKLTASLSKVVTGILNSTFSIAGALTSGVMNLIIAIIFAIYILAAKEKLAVQADKVV 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +  +         +  +  +   S  +G  + A+  G +     +L   P    +G   
Sbjct: 209 RAFLKKQTADRLYYVLGVANRTFSSFIVGQCVEAVILGSLCTLGMFLFQFPYAAMVGAFI 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  A+IP        A   ++++  +   A    ++  +   +    + P +VG  I LP
Sbjct: 269 SATALIPVVGAYLGAAFGAFMILTVDPMQAVFFLIFIVVLQQVEGNIIYPRVVGSSIGLP 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L     ++ G    G++G+  G  + A +  +  + +    +    I  
Sbjct: 329 GLWVLAAVIIGGGLGGVVGMLFGVPVAATLYKLLSDQVQKRLQTPSGIEE 378


>gi|330989400|gb|EGH87503.1| PerM family membrane protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 356

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 110/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRMPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     +   ++ LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGALLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|302332622|gb|ADL22815.1| putative permease [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 361

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 108/334 (32%), Gaps = 11/334 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +   F P L +  + +   P  +    K             +++  +  + + F+    
Sbjct: 36  IIGSVFLPFLISGFLFYICLPFQNLLE-KVGFPRWASITTIMLALFAIIGLIVAFVAPII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +  L+S+     +    + ++          +      L    + +I +      +G
Sbjct: 95  ISNINNLISQTPALQKEAEQIIKF----------ALAQMDKLPEDVTSRITNMVKSMGDG 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I   + ++    +     +I +   L +  +D       +    +     ++  +  
Sbjct: 145 VTNILSNSLQYITSLISTIFLLIMVPFFLIYMLKDHEKFIPAVAKFFKGGRKVFFVDLLT 204

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   ++S   G   +++  G+ L   Y +  +P    L +   +  +IP        A 
Sbjct: 205 DLNFTLKSYIQGQVTVSVILGIFLYIGYSIIDLPYIPLLVLFAGVANLIPFLGSWLSFAP 264

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L I  +      + +   I   +    + P ++G  + +  L     ++      G 
Sbjct: 265 AAILGIIDSPTTFIWVCIITLIAHQLEGNIITPNVMGKSLSIHPLTIIVVILAAGDLGGF 324

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             + I   L A++  +        +   +K +SN
Sbjct: 325 TLVLIAVPLYAVLKTVVSNIFKYRQRIIDKANSN 358


>gi|325106347|ref|YP_004276001.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
 gi|324975195|gb|ADY54179.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
          Length = 354

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 118/344 (34%), Gaps = 15/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++     +  M  + +  ++      K   +P++ + +     +P+   F  + +    
Sbjct: 5   MKQPPFYQKLAMVLVALIALVYIAVLGKEVLSPLIFSFLFAILLYPLCRFFEKRCKLPRG 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             ++++ +  + + +     L      + + L        +  I       D     +  
Sbjct: 65  LASILSVIVFLGIILGIFYLLG----TQFRSLSEDWPQFKEQVIYAIDSSQDWVAKTFNI 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   +      + K L  +     G   +               L ++F  I  FF    
Sbjct: 121 DRSHQLNYLTDAAKKLLSSSTVVIGATVLS---------ISSILLFLVFTFIYTFFILLY 171

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   L ++ +        ++   V  +IR   +G+ I  +    +     WL G+  
Sbjct: 172 RTLIVDFLTAVFKEKHLNIVHEVLEQVQYIIRKYLIGLMIQIVIVSTITCLVLWLIGIKY 231

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              LG++T I+ +IP     +   +S  +          A  + +       +    L P
Sbjct: 232 AFLLGLLTGIINIIPYIGIFTAMLLSALITFATTATFSKALIVIVALIGIHALDSNILLP 291

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +VG  +K+    T  G+  G    G+ G+F+   ++A++ +++
Sbjct: 292 TVVGSKVKINAFVTVLGVFIGEMIWGIPGMFLSIPIIAVMKIVF 335


>gi|305666559|ref|YP_003862846.1| hypothetical protein FB2170_09836 [Maribacter sp. HTCC2170]
 gi|88708828|gb|EAR01063.1| hypothetical protein FB2170_09836 [Maribacter sp. HTCC2170]
          Length = 362

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 124/351 (35%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   + + ++L+ LY ++   A +  A +      PI      + + ++T   +   +
Sbjct: 12  RAIAILVGIALLLLFLYKIQSVLAYLAIAAVASLLGRPIVLFLRRRLKFNNTIAVIATMI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    +       + + + L           + +    +++         +    S
Sbjct: 72  LLIGIIAGIIALFIPLLVSQGQNL---------SLLNIDALQANVENLYRQVTEYFSLSS 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I            FIP F + F  +     + +  ++   FFF +D     + L
Sbjct: 123 MEIEQGIKGSEIFANLDFGFIPNFLNSFVGVLGSLSIGLFSVLFIAFFFLKDSKLFEEGL 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    +  KK    +  ++   FLG+ +  +   ++  +  ++ G+ + + +  + 
Sbjct: 183 LVFIPDNKESRLKKSINTIKDLLSRYFLGLVLQILILFIIYSTVLFIFGIENAIVIAFLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIF---------NATCLFLWGAIELFIVDKTLRPF 299
           A++ +IP   PI    + + L +  N+              + +   I   + +   +PF
Sbjct: 243 ALLNLIPYVGPIIGGVLMMTLTMTSNLGYDFSTVILPKTIYVMIGFVIGQLVDNFFSQPF 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F  ++ G    G+ G+ I       I VI KE +   K
Sbjct: 303 IFSNSVKSHPLEIFLVIIIGGLLFGITGMIIAVPGYTAIKVILKEFLADNK 353


>gi|302187133|ref|ZP_07263806.1| hypothetical protein Psyrps6_12310 [Pseudomonas syringae pv.
           syringae 642]
          Length = 356

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APVL+ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSVLE-RLRLPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + +V LL L      +M  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLVFLLVLVPLLWHQMITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|167755466|ref|ZP_02427593.1| hypothetical protein CLORAM_00980 [Clostridium ramosum DSM 1402]
 gi|167704405|gb|EDS18984.1| hypothetical protein CLORAM_00980 [Clostridium ramosum DSM 1402]
          Length = 378

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 104/335 (31%), Gaps = 11/335 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE----------ESSTFLAVIATV 68
           IIL     +     P L  ++I F    +                          +++ +
Sbjct: 30  IILDIFNSILAVIMPFLLGIMIAFILNVLMIRIEKILSRFILDKKYTSFKRVISIIVSLL 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +  + +  +       +K +V       +          +    +    + +  L+
Sbjct: 90  IVIGVIGIIITLIIPELTNAIKVIVKSFPETFEQLQVWINQNGNSFPQLETW-INSVDLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S          T  +       S F    L+  + I+F +  L           + +
Sbjct: 149 SIASELSGLFKIGLTGMLGSTVDVISMFFTSILNLVVGIVFALYILMSKETLKRQSHKLI 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D+           ++  +      +  +G T+ A   G +      +  +P    +G + 
Sbjct: 209 DAYIPKRISVKLLEVGTLARTTFSNFVIGQTVEAFILGTLCAVGMAVLNLPYAPMVGSLV 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I A +P         +  ++++  +   A    ++  +   +    + P +VG  + LP
Sbjct: 269 GITAFVPIVGAFIGGGIGAFMILTVDPMQALIFIIFLVVLQQLEGDLIYPRVVGSSVGLP 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +   F +  G    G+ G+     +++++  + K
Sbjct: 329 SIWVLFAVTVGGGLWGITGMLFSVPVLSVVYALIK 363


>gi|329121018|ref|ZP_08249649.1| protein of hypothetical function UPF0118 [Dialister micraerophilus
           DSM 19965]
 gi|327471180|gb|EGF16634.1| protein of hypothetical function UPF0118 [Dialister micraerophilus
           DSM 19965]
          Length = 347

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 115/345 (33%), Gaps = 14/345 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------KKEESSTFLAVI 65
           +R  I+    + L+F      P   +L +     P+             K     F  +I
Sbjct: 9   LRVTIVVFFGILLFFAPVVVFPFGISLFLAILLNPLAKFIQKNILKLKIKWFPYDFSIII 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + +  + +     + +F   + E++  +  V         +   L               
Sbjct: 69  SFIVFITIVYSIGVHIFVPFINELRAFIKNVPDTLNALQQLMMSLEKNYSLSLLPPEVKT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++            L    I  +   AS          L +I +    F+F + G    
Sbjct: 129 VIARVIQNIGEYTLKLAQFSISAVFSVAST--------LLELIVVPFITFYFMKKGSVFK 180

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               SL    +      +   +  V+ +   G  ++++   + +     +  +P  + +G
Sbjct: 181 DLFISLFPERYSNRLNILFSEIYNVLHAYIRGQLLLSVIMTIFVCIGMSMFDIPYPLVIG 240

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++ MIP   PI      I L +      A  + ++      +    + P L+G  I
Sbjct: 241 LLAGVLEMIPIVGPIIGALPPIVLGLLQGTSTAIQVTIFYIFVQQLDAHLIMPKLMGSII 300

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           K+  +    G++ G +  G++G+ +    +A++ ++ +      +
Sbjct: 301 KVHPIVIIAGVLIGGQLYGVIGMMVSVPFIAVLQIVLRHMWFYER 345


>gi|294140667|ref|YP_003556645.1| permease PerM [Shewanella violacea DSS12]
 gi|293327136|dbj|BAJ01867.1| permease PerM, putative [Shewanella violacea DSS12]
          Length = 360

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 117/347 (33%), Gaps = 11/347 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +   +I+  I + +YF  G  AP+L AL++ F      +    +   + T 
Sbjct: 10  KERFSDPQAVTLVLILIGIALVIYFAGGLLAPLLVALVLAFLLEWPVAQMS-RLGINRTT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +     + + +V +  L      +   LV+ +      G+   +   +        +
Sbjct: 69  AASLVLFMFVGVMLVLIFGLVPSIWKQGVALVTDLPTMLDKGLITAQGYINQYPQFINPD 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                     S+ I  +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QL-------DSMVIELKKMLDTQHLLDIGKQILGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                 K+   + + I +   G  I  I  G+V    + L  +   
Sbjct: 182 DELLSGSKRFIPT-NRDLAHKVWIEMNQQIFNYIRGKVIEIIIIGVVSYIFFALMDLRYA 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T    +IP       T     +     G       L L  AI   +    L P 
Sbjct: 241 ALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYLMLGYAIIQALDGNVLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +    + L  +     ++      G+ G+F    L +L+  +     
Sbjct: 301 VFSDAVDLHPVFIIAAVLIFGGLWGVWGVFFAIPLASLVKAVLNAWP 347


>gi|90019906|ref|YP_525733.1| response regulator receiver domain-containing protein
           [Saccharophagus degradans 2-40]
 gi|89949506|gb|ABD79521.1| protein of unknown function UPF0118 [Saccharophagus degradans 2-40]
          Length = 357

 Score =  109 bits (272), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 104/341 (30%), Gaps = 14/341 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + ++ ++ +   L ++YF K    P++ A      + P+ +    K        A+I
Sbjct: 14  RTVRILLPYLAILATLYTIYFAKFILLPIVVAAFFALFTSPLVARLE-KLFLPRALSAII 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V V+       +                          V   +S   G    S     
Sbjct: 73  VLVGVIGALSFVAMLFTSPA-----------QQWWDKLPEVANSMSSSIGEATQSLNKAT 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 S   +++         F+  F S      L     +  + +  FF       + 
Sbjct: 122 SNGAAASNTDIAKASENIRNTTFLAMFKSFASSTPLVLTQILGTIFLIYFFLVHGQVLLL 181

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +           ++   + + +      +T + I  G  +G A+++  V      G
Sbjct: 182 RFVQARSSFSDKRQAVELLSEMQQQLSRYVTTITCVNIALGFCVGCAFYIMKVEDPFLWG 241

Query: 246 VITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +   +   P   P+        +  L    I  A  +     +   I  + + P L+G 
Sbjct: 242 ALAGALNFAPYLGPLVSATAFALVAYLQFNQIEMALLIPGVYLLINLIESQFVTPTLLGS 301

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + L  L  F  LV      G  G+ +G  L+  +++  + 
Sbjct: 302 TLNLNPLVVFVWLVLWGWLWGGFGMLVGVPLLVCLSIYLEH 342


>gi|330941878|gb|EGH44605.1| PerM family membrane protein [Pseudomonas syringae pv. pisi str.
           1704B]
 gi|330975308|gb|EGH75374.1| PerM family membrane protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 356

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRMPEVA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + +V LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|304411431|ref|ZP_07393045.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|307305247|ref|ZP_07584995.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
 gi|304350286|gb|EFM14690.1| protein of unknown function UPF0118 [Shewanella baltica OS183]
 gi|306911550|gb|EFN41975.1| protein of unknown function UPF0118 [Shewanella baltica BA175]
          Length = 360

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 120/360 (33%), Gaps = 11/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+    + +YF  G  AP+L AL++ F      +  + K   + T 
Sbjct: 10  QERFSDPQAVTLMAILVGFALVIYFAAGLLAPLLVALVLAFLLEWPVAQML-KLGINRTA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + ++    L      +   L++ +      G+   + L +        E
Sbjct: 69  GASLVIVLFLGIVVLLTFGLIPSVWRQGVSLIADLPSMIDKGLLTIQTLINQYPQFINPE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   + L               I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QLDLMVGELKKLLDTQHVLD-------IAKQLIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                +K+   + + I +   G  I  +  G+     + + G+   
Sbjct: 182 DQLISGSKRFFPA-NRQLARKVWFEMHQQIFNYIRGKVIEIVVVGVATYILFAVMGLRYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V LGV+T +  +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 VLLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLMLGYGIIQALDGNLLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     ++      G+ G+F    L +L+  +         E+   + ++
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPKTEVESLHGLDAS 360


>gi|148974917|ref|ZP_01811897.1| hypothetical membrane spanning protein [Vibrionales bacterium
           SWAT-3]
 gi|145965426|gb|EDK30675.1| hypothetical membrane spanning protein [Vibrionales bacterium
           SWAT-3]
          Length = 355

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 122/337 (36%), Gaps = 5/337 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++      L+ F   V+   II    +P+  +  +K   S    + + +   + L ++PL
Sbjct: 24  LVYWCFSILRPFILLVVWGAIIATALYPVAVAISNKTGLSKGKASALLSFIGVLLLLIPL 83

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L         +L++ +             L +IP           H S       +  
Sbjct: 84  VALSSGIYTSASDLMTGLQDGTLSLPKPKESLQEIPFIGEKVYATLVHASSNIEGVFIKY 143

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                             G  F+ + +S I        F  +       +  L   L   
Sbjct: 144 AEELKAFATKAASILGSLGGGFIQFIISTIIAGA----FMSNADKCQTGVTHLVARLTDG 199

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++ ++    +RS   G+  +A+ + ++      +AGVP+     +   ++A+I    
Sbjct: 200 KGVELVQLSKSTVRSVVQGVIGVAVIQSIMSAIGLVIAGVPAAAMWALAVLLIAIIQLPP 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            ++     IY+    +   A+   +W  +     D  L+P L+     +P L    G +G
Sbjct: 260 ILALLPAIIYMFSVESTLAASFFLVWCILVSG-SDAILKPMLLSRGSHIPMLVILLGALG 318

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+   G++GLF+G V+++L   +    +    + ++K
Sbjct: 319 GMAMSGIVGLFVGAVILSLSYELMVSWLGLEPKEEDK 355


>gi|227540180|ref|ZP_03970229.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33300]
 gi|227240041|gb|EEI90056.1| transmembrane protein [Sphingobacterium spiritivorum ATCC 33300]
          Length = 354

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 132/328 (40%), Gaps = 18/328 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +    L A+ +       Y     +++ + + ++++  +  +   + P   +  Y  
Sbjct: 31  LSYYLPGFLGAVTLYILFRNAYFKMTEQRKWNKSLVSLLMVLLTVVFIVFPTWGIINYIT 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+  LV       ++   +  +++ +P            L                N +
Sbjct: 91  PELTNLVGDKNDIIKNFNSIKDYIATVPLLKNVDLSEEALL----------------NIL 134

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + R+         +  ++++  +  L+F       +   +         +   ++   
Sbjct: 135 QKLTRYLPSILNSIAEVGVNLLVSLFVLYFMLVHSKRMESTIYHAIPFSTQSKN-ELWTE 193

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
           V  ++RS  +G+ I+A+ +G V    YW  GV + +  G +TA+  +IP    ++    +
Sbjct: 194 VNMMVRSNAIGIPILALCQGFVAMIGYWFLGVENPILWGGMTAVSTIIPVLGTMTVYVPL 253

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SI+L   G I N   L L+G I +  +D  LR  ++     +P L T FG++ G++  G+
Sbjct: 254 SIFLFANGQIGNGIGLLLYGFIVIGGIDNVLRFTILKKLGDVPPLITVFGVLLGLKLFGM 313

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           LG+  GP++++ + V+ K        + 
Sbjct: 314 LGVIFGPLILSSVGVLLKVYSNEYGRSN 341


>gi|218556025|ref|YP_002388938.1| hypothetical protein ECIAI1_3621 [Escherichia coli IAI1]
 gi|293453779|ref|ZP_06664198.1| UPF0118 inner membrane protein yhhT [Escherichia coli B088]
 gi|331670300|ref|ZP_08371139.1| putative membrane protein [Escherichia coli TA271]
 gi|218362793|emb|CAR00419.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|291321905|gb|EFE61336.1| UPF0118 inner membrane protein yhhT [Escherichia coli B088]
 gi|331062362|gb|EGI34282.1| putative membrane protein [Escherichia coli TA271]
          Length = 349

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLITLTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|317153667|ref|YP_004121715.1| hypothetical protein Daes_1960 [Desulfovibrio aespoeensis Aspo-2]
 gi|316943918|gb|ADU62969.1| protein of unknown function UPF0118 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 366

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 58/330 (17%), Positives = 131/330 (39%), Gaps = 2/330 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F   ++ + ++     P+++  +   +      ++I    ++   ++P+ FL    
Sbjct: 34  IVEPFLHTMIFSTVLAVLFSPVFAWVLPAVKGHRNIASLITVAIIVFCLLLPMTFLVMAL 93

Query: 86  MLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           + +  E +  +      G +        + G +   +     L   +     S      +
Sbjct: 94  ISQGVESLVTLNAWVAKGGLDSLASSERLEGYLLWFQRELPFLRISEIDLQASIIQYSRD 153

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    +          L  + M+  LF+F RDG  +   +  L           I 
Sbjct: 154 FAQLMIGAGTELVRNAAILVLHFLLMVFILFYFMRDGAKMVAYVKLLSPLRPRQE-DYII 212

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + +V R   +G  ++A+ +GL  G+   + G+P+     ++     +   G  + +  
Sbjct: 213 DSLRRVARGVLMGCLLVAVLQGLAGGAGLAVVGIPAFFWGAMMALASLIPVLGTGLVWVP 272

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              +LL+ G    AT L LW  I +  +D  LRP  +    ++     F  ++GGV T G
Sbjct: 273 AVGFLLLSGQWKEATLLALWCGIVVVGIDTILRPIFMREASRVSTFYIFLAILGGVYTFG 332

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +LG+F GP++++L+ V+ +  +    E+ +
Sbjct: 333 MLGIFYGPLILSLVMVMLQIYVEEYAEDLK 362


>gi|90022162|ref|YP_527989.1| hypothetical protein Sde_2517 [Saccharophagus degradans 2-40]
 gi|89951762|gb|ABD81777.1| protein of unknown function UPF0118 [Saccharophagus degradans 2-40]
          Length = 361

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 109/346 (31%), Gaps = 22/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++      I++  +   +    P L +L I   + P       K   SS 
Sbjct: 1   MEVQSPIARFLLVAATFVIVVAGMRAAESILVPFLLSLFIAVIATPPLIWMQRKGVPSS- 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA + V+C  ++  + +       + +    +    Q    +              
Sbjct: 60  ----IAMLLVICSIVIGGILIGVIVGASIADFRQDLPGYQQRLTVLTADFF--------- 106

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +  + L     L  L E+F  +  +       ++FG +  +  L ++ ++  L      
Sbjct: 107 -VQLQALGIDVELGHLRESFNPSAALSLAGNTLAQFGNMMTNAFLILLLVVFILAEEVGF 165

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I            P             +       T ++   GL++    W   +  
Sbjct: 166 RDKIKYSF------KTPEKTLAAIEKFTSGVNQYVAIKTTMSALTGLIIMCWLWFMKLEY 219

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G++  ++  +P    I       +  L++  + +A  +        F+V   + P 
Sbjct: 220 FVLWGLLAFLLNYVPTFGSILAAVPAVLLALVQLGVGDALLVGAAYLAVNFVVGNVIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++G  + L  L  F  LV     +G +G+ +   L   + +  +  
Sbjct: 280 VMGKGLDLSALVVFLSLVFWGWVLGPIGMLLSIPLTMTVKIALESF 325


>gi|315648828|ref|ZP_07901923.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
 gi|315275796|gb|EFU39148.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
          Length = 372

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 105/346 (30%), Gaps = 10/346 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+    +Y L     P L A +I +   P  +      +        ++ +      ++
Sbjct: 19  IFVTAYLIYVLLPLLYPFLLAWVIAYAMNPCVNLLQQSMKLPRWVAVSLSLLLYFGAALL 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L       + E+  L     L     +      +             +   +  +    
Sbjct: 79  ILTAAVTRLVKELITLSQSFNLHIDAWMDWLTSWTQNDSFQNIVNEIGRFYQNNPNYHET 138

Query: 137 SETFL----------KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               +           T+ +  I     +      +     I ++++ FF        ++
Sbjct: 139 INQNVTRTTQTIGTAVTDLVTGIFNGILQIIYYLPNLGTIFIVVLLSTFFLSNSWERHNR 198

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  +   +       I   + K +        I+      ++    +  GV S  A+G+
Sbjct: 199 ALFRMIPGVIHKPMTYIFSDLKKALFGFAKAQLILISITAFIVMITLYALGVNSAFAIGL 258

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  ++ ++P                  +              + IV + + P ++   + 
Sbjct: 259 LIGLVDLLPYLGVGIVLIPWSLYAFMSDDLTLGIGLTVLYSIILIVRQIMEPKVLASSVG 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L  L   FG+  G++  G+LGL IGPV + ++    +  +     N
Sbjct: 319 LDPLAALFGMFVGLKLFGILGLIIGPVSLVIVDAFRRAHVFKDLRN 364


>gi|114320847|ref|YP_742530.1| hypothetical protein Mlg_1694 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227241|gb|ABI57040.1| protein of unknown function UPF0118 [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 360

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 101/343 (29%), Gaps = 21/343 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T+     ++    + ++L  L    G   P+L A  +     P  +    +    S   
Sbjct: 20  QTLSTWHWLLGGAALVVLLAGLKAAAGVVTPLLLAAFLAIICAPPLTWMRRRGVPGS--- 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A +++     +    LF      ++ +  +          +         G      
Sbjct: 77  --VAVLALFVAVGLAFFLLFLALQGAVESMAHQAPHYQARLFGLFDETMAWLAGRGVPAE 134

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    +L               +   A         +  +   +++A  F   +  
Sbjct: 135 LLPDRPPLPALAD-------------LTGLARAVAGGVGQFTATTFLVLLAFMFLLLEET 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L +          +  +R   + +       +  ++  GL++G    L GV   V
Sbjct: 182 HLPGKLRAAFPRSRRGGVR--ARRFLRSVYRYLFIKSATSLATGLLVGVGLALIGVDFPV 239

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G++  ++  IP    I     ++ +   G  +               ++   L P  +
Sbjct: 240 LWGILAGLLNFIPTVGSILAAIPAVLIAFLGLGVMEGLLALALYVAVNVVIGSVLEPRFM 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  + L  L     L+     +G +G+ +   L  +  +  + 
Sbjct: 300 GHTLGLSPLVVLVSLMAWGWVLGPVGMLLSIPLTMIAKLALEA 342


>gi|119774627|ref|YP_927367.1| hypothetical protein Sama_1490 [Shewanella amazonensis SB2B]
 gi|119767127|gb|ABL99697.1| conserved hypothetical protein [Shewanella amazonensis SB2B]
          Length = 358

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 103/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+ S  +  +         +A +
Sbjct: 13  RGFAIMAFVVVILAGIKAASPIVVPFVLSAFIAVICNPVISWMMRFRVPK-----WLAVM 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E   ++       I    W+ +    +       + L+
Sbjct: 68  LLMFFIVMLGLWLATLVGSSINEFSKQLPHYRDQLIQQFGWILEKLQTLNIRISKEQVLA 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T    +G+  +        +  +        +   +     D     QQ+
Sbjct: 128 YFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEAQSLPKKVHLALDDPEMRLQQI 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                     +    +  T++++  G V+G      GV   +   VI 
Sbjct: 188 DKFL----------------HSVNQYMVIKTLVSLATGAVVGIGLAAIGVDYALLWAVIA 231

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     +I L         A    L       ++   + P  +G  + L
Sbjct: 232 FLFNYIPNIGSIIAAIPAILLAFIQLGPAAAGGTALLYLGTNMVMGNVIEPKFMGRGLGL 291

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 292 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 327


>gi|332036909|gb|EGI73369.1| integral membrane transport protein [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 345

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 109/345 (31%), Gaps = 22/345 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++ +  + ++L  +        P + A  I     P+   F   K   S 
Sbjct: 1   MASLTGVNKSLIVFASLVVVLAGIKAASVIIIPFILAAFIAIICNPLIKFFARYKIPKS- 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA + V+ + +   + L       + +   ++            WL D+       
Sbjct: 60  ----IAVMLVVLIIVGLGVSLGGLVGQSINDFSQQLPEYKTQLKEEFVWLVDLASQYNIL 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + ++                    +   A+           ++  +I+ + F   +
Sbjct: 116 INKDQLINMFD--------------PGKMVDVATNMLTGLGGVMANMFLIILTVVFMLFE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +S+++        P    K      + I S     T++++G G++     W+  V  
Sbjct: 162 GPMLSKKIHMAL--EDPDSKMKQIDRFLESINSYLAIKTLVSLGTGIIAAFYLWILDVDY 219

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  GV+  +   IP    I       +  LI      A  +         ++   + P 
Sbjct: 220 FVLWGVLAFMFNYIPNIGSIIAAVPAVLLALITQGPLVAGLVAAGYLTINTVMGNIVEPK 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +G  + L  L  F  L+     +G +G+ +   L  ++ +  + 
Sbjct: 280 FLGKGLGLSTLVVFLSLIFWGWLLGTVGMLLSVPLTMIVKIALEA 324


>gi|149185062|ref|ZP_01863379.1| hypothetical protein ED21_18452 [Erythrobacter sp. SD-21]
 gi|148831173|gb|EDL49607.1| hypothetical protein ED21_18452 [Erythrobacter sp. SD-21]
          Length = 357

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 137/318 (43%), Gaps = 3/318 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +  FF P+L A++      P+Y  F+++++   T  A++  + ++   ++P L++    
Sbjct: 29  VVLPFFQPLLWAVLAAILFQPLYRWFLTRRKGRETQAALLTLLVILLAVVLPALWIGSAV 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E   L                 +         + L    L     ++  +  F+    
Sbjct: 89  VAEATRLFLAFRDGQIDVAMYFEQVFSALPANIQASLDRAGLGDLGEVQAQATEFV-QAS 147

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  I + A   G     + L     +   FF  RDG +IS+Q+ +           +++ 
Sbjct: 148 LGLIAQQALAIGGSVFGFVLGFAIALYVGFFLLRDGRAISEQMLAALPFE-RGIADRLAE 206

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
               ++R+T  G  ++ + +G +    +W+ G+PS + LGVI AI +++P   P I +  
Sbjct: 207 RFLVLVRATIKGSVVVGLVQGALGAFTFWIVGIPSVLLLGVIMAIASLLPAVGPAIVWVP 266

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            +IYLL  G I+    + + G   + ++D  LRP LVG    +P        +GG+   G
Sbjct: 267 AAIYLLATGAIWQGVVVIVSGVAVIGMIDNVLRPILVGRDTGIPDWLILITTLGGIALFG 326

Query: 325 LLGLFIGPVLMALIAVIW 342
           L G+ IGP++  L    W
Sbjct: 327 LSGIVIGPLVAGLFLAGW 344


>gi|28871103|ref|NP_793722.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213969676|ref|ZP_03397811.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato T1]
 gi|301384802|ref|ZP_07233220.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato
           Max13]
 gi|302131950|ref|ZP_07257940.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28854353|gb|AAO57417.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925484|gb|EEB59044.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato T1]
          Length = 356

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 109/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APVL+ L++ F    +      +       
Sbjct: 10  QRYFSDEEAVVLAVLLFVAFTLVLTLGGMLAPVLAGLVLAFLMHGLVGLLE-RLRMPEVA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     +   +V LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGVVFTLFIGALLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HVIGRWARGYLPRE-RALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   +   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWSDQFIYLMIAHGVIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|269128813|ref|YP_003302183.1| hypothetical protein Tcur_4624 [Thermomonospora curvata DSM 43183]
 gi|268313771|gb|ACZ00146.1| protein of unknown function UPF0118 [Thermomonospora curvata DSM
           43183]
          Length = 393

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 99/290 (34%), Gaps = 17/290 (5%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            +        A+   + ++    +P   +    + E   L  +            +WL +
Sbjct: 86  RRLGTPPWLAALAGILVLLGAIALPFTLITNRVVNEWSSLRRQTEEGLDRVR---QWLLE 142

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
            P  +   ++ +      ++L+      +           ++   ++ L + L       
Sbjct: 143 GPLSVSERQINSTVDGLIRTLREALPDPVGGATAAAQGATSALLALVLLFFLL------- 195

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                 +DG  +++   S        +    +    + + +   G  ++A+ +G+ +G A
Sbjct: 196 ------KDGEKMARWALSQLPRRHRGWVAVAAVEGWRTLVAYIRGTFLVAVIDGVGIGLA 249

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFI 291
             + GVP  + LG++T I A IP        AV++ + +    + +A        +    
Sbjct: 250 LVIIGVPLALPLGLLTFIAAFIPIVGATVAGAVAVLVALVSNGLGDALLTLGAVLLVQQA 309

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L+P + G  ++L        +  G    G+ G  +   + A+   +
Sbjct: 310 EGNLLQPVIQGRSLRLHPAVILIAVTAGTLLGGIAGAVVAVPVTAITYRV 359


>gi|225180849|ref|ZP_03734297.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
 gi|225168330|gb|EEG77133.1| protein of unknown function UPF0118 [Dethiobacter alkaliphilus AHT
           1]
          Length = 350

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 115/343 (33%), Gaps = 12/343 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +  +L  ++ +      ++ + +I ++  P+ +    K     +   +   +
Sbjct: 16  RTLAVILTIIAVLWFVHKISWVIGILVVSTMIVYSISPLSNYLTRK-GVPHSVSVLSVYL 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++    +    L      EM+ L   +     + +P               ++     S
Sbjct: 75  LLLFSAFLFFYLLIPTLTNEMRALARYLATDYSYLLPEI-----------LLQIDQLMAS 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +        N +       +            ++ ++  +++  RD   + + +
Sbjct: 124 ENIHQALQDVAQNLPNMLQQAVFTMTLVTGSIFSGLTEVLIVLFLVYYMLRDLSHVKRGI 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +      + +I+   + +   G  +     G++ G A  + G+P  + LG++ 
Sbjct: 184 VRLFPPAWRKESTHVLQIIDLKVGAYLRGNLLRCTAVGIITGIALAIVGMPFALMLGILA 243

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +I    P      ++ L +  N  +   + +       +    L P L+G  + L 
Sbjct: 244 GILNIIVYIGPYLAGIPAVLLALTPNTPHPILIVVLYVTVQAVDAFLLTPNLLGKAVDLR 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                  L+ G   +G++G  +   + A I VI     +   +
Sbjct: 304 PFTVIISLLIGGTLLGVIGFLLAIPVAATIKVIIYHYYLKEDQ 346


>gi|330968867|gb|EGH68933.1| PerM family membrane protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 356

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRMPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + +V LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|320327801|gb|EFW83809.1| PerM family membrane protein [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330877413|gb|EGH11562.1| PerM family membrane protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 356

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRMPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + ++ LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLMLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|257483914|ref|ZP_05637955.1| PerM family membrane protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|320325204|gb|EFW81271.1| PerM family membrane protein [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|330894762|gb|EGH27423.1| PerM family membrane protein [Pseudomonas syringae pv. mori str.
           301020]
 gi|331013155|gb|EGH93211.1| PerM family membrane protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 356

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRMPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + ++ LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|17227705|ref|NP_484253.1| hypothetical protein all0209 [Nostoc sp. PCC 7120]
 gi|17135187|dbj|BAB77733.1| all0209 [Nostoc sp. PCC 7120]
          Length = 373

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 109/334 (32%), Gaps = 13/334 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  +++L  + + +       +A+++ F        F  +             +  +
Sbjct: 19  VAILNGWLLLQVVQYFQPLVNVFAAAVLLAFVLNYPIQFFQER-GVKRNLAIGSVLLLAV 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +   + L    + ++ ELV+ +      G                    T+ L    
Sbjct: 78  VILVGLGVTLVPLIIEQINELVNILPYWIDSGGQQIDAFQKWAA--------TQQLPVNL 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S  +       ++ +  +      F    +   ++++  ++   +   +G  +   L   
Sbjct: 130 SGLVTQLLEKVSSQLQSVTGKILSFAFDTIGVVVNVLLTVVLTIYMVLNGDRLWDGLYQW 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +  ++I R       + F+G   +    GL +  A+    VP  +  G+   + 
Sbjct: 190 FPTHIGSKVRQILRE---DFHNYFIGQATLGAILGLTITLAFVTLRVPLALLFGLAIGLF 246

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++ P G  I  + VS+ +    N +    +         +    + P ++G    L  + 
Sbjct: 247 SLFPFGTGIGISIVSLLVA-LQNFWLGVEVLGVAVAIDQVNSNFIAPRILGNLTGLNPVW 305

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               L+ G +  G+LGL I     + I  I    
Sbjct: 306 VVISLLLGAKLGGVLGLLIAIPTASFIKDIADSW 339


>gi|84502889|ref|ZP_01001002.1| Conserved hypothetical membrane/transport protein [Oceanicola
           batsensis HTCC2597]
 gi|84388872|gb|EAQ01742.1| Conserved hypothetical membrane/transport protein [Oceanicola
           batsensis HTCC2597]
          Length = 357

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 40/325 (12%), Positives = 90/325 (27%), Gaps = 7/325 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
              S+   K    P++   +I  T  P+      K    +   AV    ++       L 
Sbjct: 13  FFWSISLAKDVVLPIVLGFLIALTLSPLVRWLY-KLGVPTGIAAVALIATIGMSSSFGLY 71

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L       ++ L      A      V + +  +       +   +  +         + 
Sbjct: 72  LLSGPAASLVETLPEVRAEAEHKLSAVRQKVQQVQQAEKEMQELAQGENETAGEDDEGDV 131

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PA 198
                    +   A           +     +I   F    G     +L           
Sbjct: 132 TRVLVDEPGMLETALASFAGTGSALI---IALILAMFLLASGDMFQTKLVQSFPKFSDKK 188

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +++  + + I      +T+I    GL +G + +   +P     GV   ++  +P   
Sbjct: 189 RAIRVANDIERQISRYLGAITVINACLGLAIGISLYALDMPYAHVWGVAAFLLNYLPYLG 248

Query: 259 PISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            +          L+    +           +   I  + + P+LVG  + L     F  +
Sbjct: 249 AMLGVVAVAAVSLITYDTVGQMLIPPGVYLLLTSIEGQMVTPWLVGRHLSLNAAAVFVAV 308

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
           +      G+ G  +    +  + V+
Sbjct: 309 IFWAWLWGVAGALMAVPFLVFVKVV 333


>gi|283769099|ref|ZP_06342004.1| membrane family protein [Bulleidia extructa W1219]
 gi|283104285|gb|EFC05663.1| membrane family protein [Bulleidia extructa W1219]
          Length = 365

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 115/350 (32%), Gaps = 10/350 (2%)

Query: 6   LNPQGIMRWMIMFIIL----VSLYFLKGFFAPV---LSALIIGFTSWPIYSSFISKKEES 58
              Q I    I+ +I+       +F++ F +     L   I+ +     Y     KK + 
Sbjct: 7   PINQSIFLVFILVMIVLKIDWIFWFIQHFLSAFHSLLLGAILAYLVNITYVFLEKKKVQK 66

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                V+A   ++ + +  L  +       +  LV  +    Q               M 
Sbjct: 67  -IVALVLAYFLIVLVLVTLLFVIIPEVSNSIGSLVKNLPATIQSLGE--NDHLKKYAPMV 123

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             ++   +        +        N         + F  +  +  +++IF I  L    
Sbjct: 124 VEQIQKVNWQSYVESMVHFVRTNVFNLASGTLNVVNSFVGLLSNGLIAVIFSIYLLANKS 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                IS+ +    +  +    K    ++ +   +  +G  + A     +     ++   
Sbjct: 184 YLKKEISKIVHHFLKPTWVLKMKYAYGLLHQNFHNFIVGQLLEAFILSGLCMIGMFIFRF 243

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  +++G++   + +IP         +  +++       +    L+  I   I    + P
Sbjct: 244 PYALSVGILVGFINIIPIIGAYIGGVIGAFMVFTVQPILSVFFILYLVILQQIESNLIYP 303

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +VG  I LP +  F  +V      G+ G+ +G  L+A    + +E +  
Sbjct: 304 KVVGAKIGLPAIWVFVTVVIMGSLFGIGGMLVGIPLVATCHQVLQEELKK 353


>gi|282896546|ref|ZP_06304566.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
 gi|281198652|gb|EFA73533.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
          Length = 376

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 116/324 (35%), Gaps = 13/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            +     +       ++ A ++ F      +    K+      +AV+  +  + + +   
Sbjct: 20  ALSSIFNYFHSLIVILVGASVLAFLLNYPITWMQ-KQGARREQVAVLVFLIALSILLALG 78

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L++        +     L       ++  
Sbjct: 79  VTLFPLALTQARQLVNRLPEWIDSGRSQLMILNE--------KAEMMGLPINLDAIVVQI 130

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                + +  I        ++ +   L  +  ++  F+  + G  + Q L     + F  
Sbjct: 131 NDRVKSQLQAITAQVLNLAVVTVTSLLDFLLTMVLTFYLLQHGDELWQSLVEWLPNKFRE 190

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +    V    ++ F+   I++      L  ++    VP  +  G+   IMA+IP G 
Sbjct: 191 PFSR---TVRLSFQNFFITQLILSTCMASALIPSFLWLKVPYGLLFGLTIGIMALIPFGG 247

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   A++  L+   +I     +     I   I++  L P ++G    L  +     ++ 
Sbjct: 248 SV-GIAITTLLVSLQDISMGVRVLAAAVIVQQILENILAPRILGNFTGLNPVWVLISVLT 306

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G R  GLLG+ +      +I  + 
Sbjct: 307 GARVGGLLGVIVAVPCAVVIKTVI 330


>gi|320655761|gb|EFX23684.1| hypothetical protein ECO7815_03080 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 349

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|260461112|ref|ZP_05809361.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259033146|gb|EEW34408.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 389

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 113/339 (33%), Gaps = 12/339 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +F+ + +LYF + FF PV+ A ++  T  PI      K+       A +  +
Sbjct: 30  RLLLVGIFLFMAIYALYFARAFFMPVILAFLLALTLTPIVRIL-RKRGIPEVASATLLVL 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +C+F      L       +    S      +    + R L  I       E  T+   
Sbjct: 89  LSICVFASAGYLLSSPVFDLINNSSSIGQQLTERLAQLRRPLEKIMQISHQIEQLTETSQ 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P          +       +   AS          +  +  +  L         I   +
Sbjct: 149 EPG------IQKVAVAQSGILSAAASNILSAGTSLTIIFVLSLFLLASGTMFYEKI---I 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S           ++   V + I    L +TII  G G V+G   W  GVP+ +  GV  
Sbjct: 200 QSFASLSEKKRALRVVYDVEREISHYLLTVTIINAGLGTVIGLGLWALGVPNPLVWGVAA 259

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A+   +P    +    +     L+    I  A     +  +   +  + + P +VG  ++
Sbjct: 260 ALFNFLPYVGALLTIVLVAVIALISFDTISYALLAPAFVLLCDVVEGQFVTPMVVGRRLE 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  +  F  +       G +G  +   L+ +I V     
Sbjct: 320 INAVAIFIAIAFWSWLWGFVGALMAVPLLVVIKVFCDHF 358


>gi|254228523|ref|ZP_04921948.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262392705|ref|YP_003284559.1| putative permease [Vibrio sp. Ex25]
 gi|151938905|gb|EDN57738.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|262336299|gb|ACY50094.1| putative permease protein [Vibrio sp. Ex25]
          Length = 356

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 105/324 (32%), Gaps = 19/324 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LYF K    P++ +  I     P  +    K         V+    ++   I+ L  + 
Sbjct: 25  GLYFAKPILLPIVLSTFISLLCSPFINYLEDK-GLPRAITVVVTLSFLVGASIIGLAAMS 83

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                   EL S V   +Q    V +                        L I S+  + 
Sbjct: 84  EPAKQWWSELPSIVKNVSQEVSEVTQ---------------ASADHLNTPLNIASDMGMD 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EVGNNTVFSLVKTLATTTPTILTQAMIVLFMVYFMLNHGRSLFRKSVSYLHGFAKQRQAI 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ + + K +      +T++  G GL +G+ +++ G+      G    +M   P   P+ 
Sbjct: 189 ELVKALQKDLSRYIGTITLVNAGLGLSVGAVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 262 FTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++      ++     +     +   I  + + P L+G    L  L  F  LV  
Sbjct: 249 SMVSFGFVAYLQLESVSFMLTVVSIYLLINLIESQFVTPTLLGKRFNLNPLVIFVWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
               G +GL IG  L+  I ++ +
Sbjct: 309 GWLWGGMGLLIGVPLLVCINILVE 332


>gi|320639757|gb|EFX09351.1| hypothetical protein ECO5101_02065 [Escherichia coli O157:H7 str.
           G5101]
          Length = 349

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|293416878|ref|ZP_06659515.1| inner membrane protein yhhT [Escherichia coli B185]
 gi|291431454|gb|EFF04439.1| inner membrane protein yhhT [Escherichia coli B185]
          Length = 349

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLITLTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVIFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|262066651|ref|ZP_06026263.1| permease [Fusobacterium periodonticum ATCC 33693]
 gi|291379610|gb|EFE87128.1| permease [Fusobacterium periodonticum ATCC 33693]
          Length = 364

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 118/327 (36%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+F  ++ A+ I     PI      K + +      ++   V+ + I+  L +    +  
Sbjct: 38  GYFMTLIMAIFIAILLEPIEKYLKKKSKINDILAISLSIAFVVLIVIIMSLIVIPEIISS 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K L       ++  + + + +++         + T+ L+   +  I + T      +  
Sbjct: 98  LKVLNDMYPAISEKVLTIGKDVTNYLAEKNIYTVSTEELNDSFTNFISNNTSNIKEFVFA 157

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                  + + F +  ++     + L        ++   +  +       Y     R+  
Sbjct: 158 FVGGLVNWTLGFTNLIIAFTLAFLILLDKKNLIKTLENLIKIIFGVKNTPYIMNKLRLSK 217

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +  S   G  I++   GL +     + G P      ++  +  MIP    I    V+ +
Sbjct: 218 DIFISYISGKIIVSSIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIFGGIVAFF 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++         L +   I   +    + P ++G  + L        ++      G++G+
Sbjct: 278 LILLVAPIKTLILLIAIIISQLVDGFVVGPKIIGNKVGLSTFWVMVSMIIFGNLFGIVGM 337

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
           F+G  ++++I + + + +   ++  ++
Sbjct: 338 FLGTPILSIIKLFYVDLLKRAEQGGKE 364


>gi|52081417|ref|YP_080208.1| membrane protein YtvI [Bacillus licheniformis ATCC 14580]
 gi|52786793|ref|YP_092622.1| YtvI [Bacillus licheniformis ATCC 14580]
 gi|319647325|ref|ZP_08001547.1| YtvI protein [Bacillus sp. BT1B_CT2]
 gi|52004628|gb|AAU24570.1| conserved membrane protein YtvI [Bacillus licheniformis ATCC 14580]
 gi|52349295|gb|AAU41929.1| YtvI [Bacillus licheniformis ATCC 14580]
 gi|317390672|gb|EFV71477.1| YtvI protein [Bacillus sp. BT1B_CT2]
          Length = 371

 Score =  108 bits (271), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 98/344 (28%), Gaps = 10/344 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    +  +     Y+      P + ALI+     P                  I   
Sbjct: 11  RAVYVLFLTAVCGAVGYYSFPLTYPFVIALILAIMINPFVEWLDKLTGFPRGVNVGIVLF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      L  +    +     L   + L                     +EL      
Sbjct: 71  GFLTAGAGFLTLVVAEIVSGTAYLAKILPLQFNKAALYIESFFTNQIMPLYNELAAFFDG 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              + +    T ++  G          +  I      F     +    +IF ++A FF  
Sbjct: 131 LEAAQQESIITQVQNLGSELASGTALLLSKILETVPLFFAFLPNMAAVLIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   I  +  S+      +    +   + + +         +     +++     +  V
Sbjct: 191 KDLHKIQNKARSVLPDRLISGAAAVYAELKRALAGFVKAQLTLVAMTMVLVLIGLSVLKV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              VA+  +  ++ ++P     S     I  L                I + +  +   P
Sbjct: 251 NHAVAIAFLIGLVDLLPYLGTGSVFVPWIVYLAAAKQLPLAIGLGILYIVVLVFRQLAEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++   I L  L T   L  G +  G LGL +GP L+ LI  ++
Sbjct: 311 KILSRSIGLHPLGTLIALFAGFKLFGFLGLIMGPALLVLIQALF 354


>gi|28210756|ref|NP_781700.1| permease [Clostridium tetani E88]
 gi|28203194|gb|AAO35637.1| permease [Clostridium tetani E88]
          Length = 337

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 117/333 (35%), Gaps = 13/333 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   ++  I+ S    +     ++ + +I +   P+    + K        + I   S++
Sbjct: 12  VLIGLVIAIIFSNSTFRNILKLIVISFVIAYILKPVKEVLV-KVGIKDGIASFITIFSLI 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L ++ ++FL      E   ++  +             +  +       EL     S   
Sbjct: 71  ILVVIFVMFLIPSLFRESNNIIVALDRIQMFLDGAYDKIKPLKNNKMGIELLHHIYSKVD 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           ++   +   +    +               +  + I  + I  ++F  D   I+ +L  L
Sbjct: 131 TIINKTFMNIFDKTVSL------------GENIMDIFIIPIISYYFLVDWKKINSRLIVL 178

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    ++I + + K++    +   I++   G V      L  V   + L VI A  
Sbjct: 179 FPMKIRTVVQRIMKDIDKILTRYIVVQIILSALIGAVTFIILILLKVDFPILLSVINAFF 238

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   PI  +  +I + +  +   A    +   +   I    + P  +G  I +  L 
Sbjct: 239 NIIPYFGPILGSIPAILVALTISTKKALWTAICLYLIQQIEGNIISPKFIGDNISMHPLL 298

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L+ G    G+LG+ +   L  +I VI+++
Sbjct: 299 IIILLIIGGELWGVLGMILAIPLGVIIKVIYED 331


>gi|226304565|ref|YP_002764523.1| hypothetical protein RER_10760 [Rhodococcus erythropolis PR4]
 gi|226183680|dbj|BAH31784.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 392

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 107/344 (31%), Gaps = 14/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+ +  + ++   +  L+    PV  AL+      P+            +   ++  +
Sbjct: 25  RLIVIFAGLLVLGYVVLRLETVLIPVGLALLASALLIPVVDRLQVW-GVPRSAAVIVVLL 83

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L    + F+    +  + +L  +   +                     +     + 
Sbjct: 84  ASIGLVAGIMTFVVEQFIDGLPQLTDQFTASVTQIQNWLTSGPLHFSEDQIRQAGDSVVK 143

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             QS +              +   A     +  +     +  +  L FF   G  I Q +
Sbjct: 144 SVQSNRE------------SLTSGALTTATVIGEIFTGALLTLFTLIFFLYGGDQIWQFV 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         +         +         +A  + + +G+   + GVP  + L  + 
Sbjct: 192 TRIVPTDARRRVRIAGSAGFGSLIGYVRATVAVAAADAIGIGAGLAILGVPLALPLASLV 251

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A IP     ++     +  L+      A  +       + +    ++P L+G  ++L
Sbjct: 252 FIGAFIPIVGAFLTGFLAVLVALVTKGFLTALIVLGIIIGVMQLEAHVMQPLLLGRAVRL 311

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L     +  G+   G++G  +   ++A++    +  +    +
Sbjct: 312 HPLAVVLAITTGIVLAGIVGGLLAVPIVAVLNTAIRSLLADDPD 355


>gi|303243971|ref|ZP_07330310.1| protein of unknown function UPF0118 [Methanothermococcus
           okinawensis IH1]
 gi|302485623|gb|EFL48548.1| protein of unknown function UPF0118 [Methanothermococcus
           okinawensis IH1]
          Length = 343

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 137/344 (39%), Gaps = 9/344 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +M+  ++ + L  +Y    F   +  +    +   PIY                +A +
Sbjct: 7   RLLMKIFVLGVFLAIVYMTYPFLDTLALSCAFAYMGKPIYDKLKPHTGN------TLAAI 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  FI+P + + Y  + E+   + ++ + + +   +             S ++     
Sbjct: 61  ICLLAFIIPTVIVGYIVLKELLIFLQQINIQSLNLQSMDTVERLNNLLYKVSSIFGYSWQ 120

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +       + + +    +I    ++  MI  +  +  + ++   ++F +DG  + + +
Sbjct: 121 VDEQTLSNYISQILSYLEPYIKNSLAQL-MILPEIAIKTMIVLFMTYYFLKDGHVVKKAI 179

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +    +     + +  ++ F+G  + +I  G++ G  Y++ G+P+   L VIT
Sbjct: 180 LAQVPDKYYEKTELFLNNLNESYKNLFIGNALTSIAIGVISGIGYYIIGIPNAFILAVIT 239

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTLRPFLVGGPIK 306
            + A++P     +    +SIY L+ G I     L L+G      + D  +RP +V     
Sbjct: 240 GVFALLPIIGGWTVYIPLSIYYLMTGEIVKGIELLLFGWIFLSTLPDFVIRPLIVKKESD 299

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +         + G  T+GL G  +GP+++     +W+  +   K
Sbjct: 300 VHPSLILIAFLIGPLTLGLGGFAMGPLIVGAFDALWRVKLRESK 343


>gi|298486116|ref|ZP_07004180.1| predicted membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298159361|gb|EFI00418.1| predicted membrane protein [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 356

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRLPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + ++ LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|71735665|ref|YP_273787.1| PerM family membrane protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71556218|gb|AAZ35429.1| membrane protein, PerM family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 356

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRMPELA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + ++ LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|189347655|ref|YP_001944184.1| hypothetical protein Clim_2181 [Chlorobium limicola DSM 245]
 gi|189341802|gb|ACD91205.1| protein of unknown function UPF0118 [Chlorobium limicola DSM 245]
          Length = 376

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 70/356 (19%), Positives = 146/356 (41%), Gaps = 8/356 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAP-VLSALIIGFTSWPIYSSFISKKEESSTFL 62
                + ++  ++  I  +    ++ FF    L A I    S PIYS             
Sbjct: 18  RFTASKVVLLLIVFVISALFFAMIRYFFMAIFL-AAIFSALSMPIYSRIERFVRGRKNLS 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + +  +S+  +  +P   +     ++   +    V   Q  +  P   + +         
Sbjct: 77  SALTMISLFIMVFLPFTAVMGIVAVQAVNISRAAVPWIQAQLKEPATYNTMLQSF----P 132

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L   +   +     L      F+    S   +  ++    +   +  +FFF +DG 
Sbjct: 133 YYRELELYREEILQKAAELAGTAGTFLFNSLSSITVTAMNELFLMFIFLYTMFFFLKDGR 192

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +++           + ++      V R+T  G  ++ + +G V G A  LAG+ S +
Sbjct: 193 LLLEKIMYYVPLDESDQY-RLLDRFLSVTRATLKGTMVVGLIQGSVAGLALHLAGIESAL 251

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G I ++++++P    P+ +   +IYL + G+   A  +FL+ +I +  +D  LRP L+
Sbjct: 252 FWGTIMSVLSVVPVLGPPLVWLPAAIYLAVTGHYTEAAAVFLFCSIIVSQLDNVLRPILI 311

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           G   ++  L  FFG +GG+   GL G  IGP++ AL   +W+       +  +++ 
Sbjct: 312 GRDTQMHELMIFFGTLGGLGLFGLFGFIIGPIVAALFITVWEIYGETFSDYLQEVK 367


>gi|325272114|ref|ZP_08138549.1| hypothetical protein G1E_04512 [Pseudomonas sp. TJI-51]
 gi|324102757|gb|EGC00169.1| hypothetical protein G1E_04512 [Pseudomonas sp. TJI-51]
          Length = 356

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 115/349 (32%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ F    + ++   +    +  
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALE-RLRVPTRL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++     M    + +L L      ++  L +++         +   L +    + + E
Sbjct: 69  AVMLVFALFMGALALFMLVLVPLLWHQLITLFNELPGMLGKWQSLLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLHAIESVRGEI--------GKFGQWALTFSLSSLPLLVNAMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +             ++   + + I +   G  I  +  G+    A+   G+   
Sbjct: 181 ELIGRWVSGSLP-RQRTLLNRVGSEMNRQIANYIRGKGIEILICGIATYIAFISLGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  +  ++P    +  T       L   G       L    AI   +    L P 
Sbjct: 240 ALLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQFIYLMTVYAIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  LI  +       
Sbjct: 300 LFSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAWPRQ 348


>gi|124007643|ref|ZP_01692347.1| putative permease [Microscilla marina ATCC 23134]
 gi|123986941|gb|EAY26706.1| putative permease [Microscilla marina ATCC 23134]
          Length = 379

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 101/315 (32%), Gaps = 7/315 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           +  +   +++    +L +L     P   A ++ +   P+      K          +++ 
Sbjct: 16  RTAIWVAVIWGFFKALQYLSDILIPFAIAALLAYLINPLVIFLQEKVRIRNRVISVLLSL 75

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V  L     L L      ++  +   V    Q      +    IP  +W       + 
Sbjct: 76  IVVFGLLTGLALILIPLVTKDISHMAEIVKGLAQDPQLDMKAQEYIPPSVWKEVNTLLNS 135

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               + K  +        +           +  L   + +  +++ L F   D   I  Q
Sbjct: 136 DFFHTDKFANMAIDAAKKVLPNVIGLFNNVLHLLLSIMGLAIILLYLVFILLDYNKIMVQ 195

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L    +    K +S    K + S F   T+IA   G++    + +  +P  V  G+ 
Sbjct: 196 WTDLLPEQYHHTIKDVSTNFKKAMGSYFRAQTVIASLVGILFAIGFSIIDLPMAVVFGLF 255

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIK------GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ ++P    I+F   +++ L+               +    AI   I D  L P ++
Sbjct: 256 VGLLNLVPYLQNIAFIPAALFALVHSLDTGENFWIMMLLVLAIFAIVQLIQDALLTPKIM 315

Query: 302 GGPIKLPFLPTFFGL 316
           G  I L        L
Sbjct: 316 GDAIGLNPAVMLLSL 330


>gi|239993129|ref|ZP_04713653.1| transport protein [Alteromonas macleodii ATCC 27126]
          Length = 386

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 108/352 (30%), Gaps = 21/352 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++  +++F ++ +LY  K    P+  +  +     P+ +    K     T  A    
Sbjct: 25  QTRLLNILVIFAVIYTLYLAKSLLVPLFFSAFVALLLSPLVAF-ARKLFIPRTLSAG--- 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM---------- 117
            +++ L + P  FL        +  +  +             +S                
Sbjct: 81  -ALIVLLVAPFTFLGIELAEPAERWMQSLPKIAAEISKEIEEISSNIDAYATPPAEPVEK 139

Query: 118 ---WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              + S       S   S    +   +                         ++  I+ +
Sbjct: 140 ERSFFSWFGDDEKSPELSPPQDNTNSVTDKIKQSGIDIGLTLFGNAPFLLAQVLACIVLI 199

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKIS-RIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           FF    G ++          +       +    + + + S  + ++II    GL     +
Sbjct: 200 FFLLVFGPNLFNVFVRDFPIVTNKRRTLVLVDQIQRELSSYIVTISIINSCLGLATAGVF 259

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +  G+   +  G + A+M  +P    +      + + L+  G   +A        +   I
Sbjct: 260 YYLGIDDALLWGALVALMNFVPYLGGVASCVVLLVVGLVQFGLTSSAFLPAGLFLVLNII 319

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + + P ++G  ++L  L     +       G++G+ +   ++    +I +
Sbjct: 320 ESQLITPAVLGRSMQLNPLIIIIWIAITGWLWGVVGVLLAVPILMCFKIILE 371


>gi|197123871|ref|YP_002135822.1| hypothetical protein AnaeK_3480 [Anaeromyxobacter sp. K]
 gi|196173720|gb|ACG74693.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. K]
          Length = 412

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/379 (10%), Positives = 115/379 (30%), Gaps = 24/379 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
                    +  ++  ++L  +        P   A +  +   P+ +    ++       
Sbjct: 9   RRPRTRLYALTALLWVMMLGVVALAWPVLLPFTLAGLAAYVIDPVIAGIARQRVAGRPVP 68

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP------------- 105
                ++    +  L  +  + +      E    + ++        P             
Sbjct: 69  RVAAVLVVYAVLATLVWIAAVSILPAVYREAIRALLELRDFLASITPERVQEWTRAIDAF 128

Query: 106 ------VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                          G       ++  L+   +  +   T      +  +  F+      
Sbjct: 129 LQRYGIPLDVTPSTGGLDTPGGRFSVDLAAGMASALHDLTLALRGRVSDVVAFSRAILAG 188

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +     ++ + +   F   D   I +  +++    + A  +++   +   +     G  
Sbjct: 189 TIQTLFFVVLLFMLTAFISMDAPRILRWFETVVPSHWRADLRRLRAGIDAGLSGVVRGQL 248

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNA 278
            I +  G++      +  VP   ALG +  ++ ++P    I     + +  L  G    A
Sbjct: 249 TIMVVNGVLTLIGLLVLKVPFAFALGFLAFVLYIVPIFGTILSSVPIVLLALTGGGPTKA 308

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                W  +   +    L P ++G   ++  +     LV G R+ G++G  +   + +++
Sbjct: 309 LLALGWITVVHALEAYVLNPKIMGDAARIHPVLIVLALVVGERSFGIVGALLAVPVASVV 368

Query: 339 AVIWKESIMAIKENKEKIS 357
             +++       E  E+ +
Sbjct: 369 VAVFRFLHRKQVELDERAA 387


>gi|294783199|ref|ZP_06748523.1| permease [Fusobacterium sp. 1_1_41FAA]
 gi|294480077|gb|EFG27854.1| permease [Fusobacterium sp. 1_1_41FAA]
          Length = 364

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 119/327 (36%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+F  ++ A+ I     PI      K + +      ++ V V+ + I+  L +    +  
Sbjct: 38  GYFMTLIMAIFIAILLEPIEKYLKKKSKINDVLAISLSIVFVVLIVIIMSLIVIPEIISS 97

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K L       ++  + + + +++         + T+ L+   +  I + T      +  
Sbjct: 98  LKVLNDMYPAISEKVLTIGKDVTNYLAEKNIYTVDTQELNDSFTNFISNNTSNIKEFVFA 157

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                  + + F +  ++     + L        ++   +  +       Y     ++  
Sbjct: 158 FVGGLVNWTLGFTNLIIAFTLAFLILLDKKNLMKTLENLIKIIFGVKNTPYVMNKLKLSK 217

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +  S   G  I++   GL +     + G P      ++  +  MIP    I    V+ +
Sbjct: 218 DIFISYVSGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIFGGIVAFF 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++         L +   I   +    + P ++G  + L        ++      G++G+
Sbjct: 278 LILLVAPIKTLILLIAIIISQLVDGFIVGPKIIGNKVGLSTFWVMVSMIIFGNLFGIVGM 337

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
           F+G  ++++I + + + +   ++  ++
Sbjct: 338 FLGTPILSIIKLFYVDLLKRAEQGGKE 364


>gi|38704170|ref|NP_312350.2| hypothetical protein ECs4323 [Escherichia coli O157:H7 str. Sakai]
 gi|89110538|ref|AP_004318.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|90111597|ref|NP_417931.4| inner membrane protein, predicted membrane permease, UPF0118 family
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157162951|ref|YP_001460269.1| hypothetical protein EcHS_A3673 [Escherichia coli HS]
 gi|168747032|ref|ZP_02772054.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4113]
 gi|168753242|ref|ZP_02778249.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4401]
 gi|168759512|ref|ZP_02784519.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4501]
 gi|168765837|ref|ZP_02790844.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4486]
 gi|168772617|ref|ZP_02797624.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4196]
 gi|168779573|ref|ZP_02804580.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4076]
 gi|168785295|ref|ZP_02810302.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC869]
 gi|168797260|ref|ZP_02822267.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC508]
 gi|170082988|ref|YP_001732308.1| inner membrane protein [Escherichia coli str. K-12 substr. DH10B]
 gi|188496205|ref|ZP_03003475.1| putative membrane protein [Escherichia coli 53638]
 gi|194431192|ref|ZP_03063485.1| putative membrane protein [Shigella dysenteriae 1012]
 gi|194435818|ref|ZP_03067921.1| putative membrane protein [Escherichia coli 101-1]
 gi|195934968|ref|ZP_03080350.1| inner membrane protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807622|ref|ZP_03249959.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4206]
 gi|208811875|ref|ZP_03253204.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4045]
 gi|208820437|ref|ZP_03260757.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4042]
 gi|209398386|ref|YP_002272918.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4115]
 gi|217324479|ref|ZP_03440563.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. TW14588]
 gi|238902565|ref|YP_002928361.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253771697|ref|YP_003034528.1| hypothetical protein ECBD_0267 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163398|ref|YP_003046506.1| putative inner membrane protein [Escherichia coli B str. REL606]
 gi|254795394|ref|YP_003080231.1| putative inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|256025802|ref|ZP_05439667.1| predicted inner membrane protein [Escherichia sp. 4_1_40B]
 gi|261224757|ref|ZP_05939038.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254348|ref|ZP_05946881.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|307140157|ref|ZP_07499513.1| inner membrane protein YhhT [Escherichia coli H736]
 gi|312972261|ref|ZP_07786435.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|84028001|sp|P0AGM1|YHHT_ECO57 RecName: Full=UPF0118 inner membrane protein yhhT
 gi|84028002|sp|P0AGM0|YHHT_ECOLI RecName: Full=UPF0118 inner membrane protein yhhT
 gi|85676569|dbj|BAE77819.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|87082271|gb|AAC76499.2| inner membrane protein, predicted membrane permease, UPF0118 family
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157068631|gb|ABV07886.1| putative membrane protein [Escherichia coli HS]
 gi|169890823|gb|ACB04530.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. DH10B]
 gi|187771629|gb|EDU35473.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4196]
 gi|188018316|gb|EDU56438.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4113]
 gi|188491404|gb|EDU66507.1| putative membrane protein [Escherichia coli 53638]
 gi|189002228|gb|EDU71214.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4076]
 gi|189359127|gb|EDU77546.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4401]
 gi|189364557|gb|EDU82976.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4486]
 gi|189369883|gb|EDU88299.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4501]
 gi|189374511|gb|EDU92927.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC869]
 gi|189380018|gb|EDU98434.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC508]
 gi|194420647|gb|EDX36723.1| putative membrane protein [Shigella dysenteriae 1012]
 gi|194425361|gb|EDX41345.1| putative membrane protein [Escherichia coli 101-1]
 gi|208727423|gb|EDZ77024.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4206]
 gi|208733152|gb|EDZ81839.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4045]
 gi|208740560|gb|EDZ88242.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4042]
 gi|209159786|gb|ACI37219.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. EC4115]
 gi|217320700|gb|EEC29124.1| inner membrane protein YhhT [Escherichia coli O157:H7 str. TW14588]
 gi|238862577|gb|ACR64575.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|242378995|emb|CAQ33793.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|253322741|gb|ACT27343.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975299|gb|ACT40970.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253979455|gb|ACT45125.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|254594794|gb|ACT74155.1| predicted inner membrane protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|260447510|gb|ACX37932.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|309703880|emb|CBJ03221.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|310334638|gb|EFQ00843.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|315138048|dbj|BAJ45207.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|315614743|gb|EFU95383.1| conserved hypothetical protein [Escherichia coli 3431]
 gi|320181967|gb|EFW56873.1| Putative PerM family permease [Shigella boydii ATCC 9905]
 gi|320191510|gb|EFW66160.1| Putative PerM family permease [Escherichia coli O157:H7 str.
           EC1212]
 gi|320645257|gb|EFX14273.1| hypothetical protein ECO9389_01809 [Escherichia coli O157:H- str.
           493-89]
 gi|320650568|gb|EFX19034.1| hypothetical protein ECO2687_04699 [Escherichia coli O157:H- str. H
           2687]
 gi|320661544|gb|EFX28959.1| hypothetical protein ECO5905_02077 [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666567|gb|EFX33550.1| hypothetical protein ECOSU61_16165 [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323934540|gb|EGB30940.1| yhhT protein [Escherichia coli E1520]
 gi|323939308|gb|EGB35519.1| gyhhT [Escherichia coli E482]
 gi|323959674|gb|EGB55325.1| gyhhT [Escherichia coli H489]
 gi|323970073|gb|EGB65348.1| gyhhT [Escherichia coli TA007]
 gi|326337558|gb|EGD61393.1| Putative PerM family permease [Escherichia coli O157:H7 str. 1044]
 gi|326344691|gb|EGD68440.1| Putative PerM family permease [Escherichia coli O157:H7 str. 1125]
 gi|332085331|gb|EGI90503.1| hypothetical protein SB521682_4065 [Shigella boydii 5216-82]
 gi|332085941|gb|EGI91105.1| hypothetical protein SD15574_4198 [Shigella dysenteriae 155-74]
          Length = 349

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|260889294|ref|ZP_05900557.1| sporulation integral membrane protein YtvI [Leptotrichia hofstadii
           F0254]
 gi|260860705|gb|EEX75205.1| sporulation integral membrane protein YtvI [Leptotrichia hofstadii
           F0254]
          Length = 378

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/337 (15%), Positives = 115/337 (34%), Gaps = 7/337 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++ +++   + L  F  P   AL +   + P       K + S     +I+ V+ 
Sbjct: 15  LVYIALILLVVFIAFKLGIFLFPFTIALFLSILTRPFTRFLEKKLKLSKKLSTIISIVTF 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F   + +     + E+ +L   +   ++    +  W  ++         +    +  
Sbjct: 75  LIIFFGAIGWGSLKLISEIYKLSQNLNNYSEIAQKL--WSDNMTKIDTYLGNFPSGFTRQ 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  I S     +  +    +    F        L I   I+A FF   D   I   L+ 
Sbjct: 133 VNDTINSFISSGSARLGIFIKGLINFITSIPTLILYICITILATFFISLDRDEIVAFLEQ 192

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA-----GVPSHVALG 245
                +      I   +  V+ S      I+       L     L       VP  + + 
Sbjct: 193 QLPKSWLDKVFNIKTDMFTVLGSYIKAQIILMTICFFELLIWLNLLSFLKLNVPYPLLMS 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+  +P     +       +    +      + +   + +  V + L P LV   +
Sbjct: 253 ILICIIDTLPILGAGTILIPWAIISFALSDIKLGIMLIIIYLFVLSVRQMLEPKLVSQNL 312

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +  L T   +  G +  G++G  IGPV+M ++  ++
Sbjct: 313 GVHPLITLISMYSGFKIFGVIGFLIGPVVMIILKNVF 349


>gi|126661126|ref|ZP_01732206.1| hypothetical protein CY0110_09575 [Cyanothece sp. CCY0110]
 gi|126617602|gb|EAZ88391.1| hypothetical protein CY0110_09575 [Cyanothece sp. CCY0110]
          Length = 340

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 93/319 (29%), Gaps = 21/319 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P+  A  +    +P+ +    K          ++ + V+ +    +        L
Sbjct: 28  QPISMPLAFAFFLVVLVYPLQNKLEQKLPR------WLSLIIVLFVLGGVVALAQGALSL 81

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
             + +  K+         +   +                 ++   ++             
Sbjct: 82  SAEIIEPKIPQYLDRLEQMWTVIKSWASNYGLPVPQFNFQNNNTPIQ------------- 128

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            + + A      FL     +I  I  L     +     +++          +        
Sbjct: 129 -LTQQALSGLQTFLSTVSLLILTISLLILLLLEVNQYKRKVQQAFPSRTSQHIINAVGNT 187

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVS 266
            + +R     MT   I  G++ G    + GV   +  G+I  I+  +P    I      +
Sbjct: 188 SEKLRRYLTVMTFTCILTGVLTGIWCLIIGVDLALVWGLIAFILNYVPTIGSIIAVIPPT 247

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  L+   +       +   I   I+   + P + G  ++L      F +V      G+ 
Sbjct: 248 LIALLFNGVPRGIATVIGLGIIQVIMGNFVDPRIQGKTLQLSPFIALFSIVFWGWIWGIA 307

Query: 327 GLFIGPVLMALIAVIWKES 345
           G  +G  +   I +  +E 
Sbjct: 308 GAILGIPMTISIILFCEEF 326


>gi|126696270|ref|YP_001091156.1| permease [Prochlorococcus marinus str. MIT 9301]
 gi|126543313|gb|ABO17555.1| Predicted permease [Prochlorococcus marinus str. MIT 9301]
          Length = 347

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 110/340 (32%), Gaps = 3/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            + +++ I L+ ++ LK F   ++ AL+I      + +      +   +    +   ++ 
Sbjct: 7   FKLVVILITLLIVWTLKDFLLLIICALVISNIVCNLSNQIQKGLKIPRSISLFLVLAAIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + +    + E  E++ ++         +     +    ++  E     +    
Sbjct: 67  VIIFTIFIIVLPPFIKEFNEILVEIPNGLSKINTLINTNLNKFNSLFYGEQSENVIDIFS 126

Query: 132 SLKILSETFLKTNGIDFI---PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            +  +      +     I    +             L +IF++        +     + +
Sbjct: 127 LINNVVTIPDVSTIAKAIQESFKNLINIAGNLGSGLLRLIFVLAVSLMISIEPKQYKENI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +   ++ I       + +    M I ++  GL+      +  V   V+  +I 
Sbjct: 187 LLLIPKNYRNKFRNILEKCNIALANWTFSMVISSLSVGLLSLIVLSILDVKYVVSNALIA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P+      I + +  N +    +     I   I    + P ++     L 
Sbjct: 247 MVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGSYVIIQNIESYIIMPSIMKKKANLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T     G     G LGL +   L  +I V+ KES   
Sbjct: 307 PGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESFKD 346


>gi|254381927|ref|ZP_04997290.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194340835|gb|EDX21801.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 436

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/309 (11%), Positives = 99/309 (32%), Gaps = 14/309 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++++++  +  ++      ++AL++     P       +          +  +
Sbjct: 79  RLLLLAGMLWVLMKVISEVRLVVLAFVAALLVTALLQPFVVRL-RRLGLPRGLATAVTAI 137

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +  +   F+ +  M  + +L  +V                    +W  +       
Sbjct: 138 LGFVVIGLVGWFVVWQVMENLDDLSDRVRDGINEL------------KLWLLDSPFHVTE 185

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    + T       + I     +   + ++    ++  + +  F   DG  I   +
Sbjct: 186 KQINDIAKNLTDTIGTNTEEITSAGLQGVTVLVEVLTGMLLAMFSTLFLLYDGKRIWNWV 245

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                 + + +   G  ++A+ + + +G   +   V   V L V  
Sbjct: 246 LGLVPAPARPGVAGAGPRAWRTLTAYVRGTVLVALIDAVFIGLGLYFLDVTMAVPLAVFI 305

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     IS     +  L+   +F A  +     +   I    L+PF++G  +++
Sbjct: 306 FLFAFIPLVGAVISGALAVVVALVTQGVFTALSVLAVVLLVQQIEGHVLQPFILGRAVRV 365

Query: 308 PFLPTFFGL 316
             L     +
Sbjct: 366 HPLAVVLSV 374


>gi|153003656|ref|YP_001377981.1| hypothetical protein Anae109_0785 [Anaeromyxobacter sp. Fw109-5]
 gi|152027229|gb|ABS24997.1| protein of unknown function UPF0118 [Anaeromyxobacter sp. Fw109-5]
          Length = 363

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 124/342 (36%), Gaps = 7/342 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  M++  + ++   +  F+     A ++  T          K        A   T+
Sbjct: 8   RRLLVSMLVVALALTAALVWPFWVAFFLAAVLSATLRRPMEWLARKLRGRREIAAAALTI 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V+   ++PL  +    + E+ + V  +             +  I   +           
Sbjct: 68  AVLLAVVLPLAAIGTLIVGEVLDGVQFLRKLFAS-----EGIGGILARLPDPLEQAARKV 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                +   +               +            ++ M+IALFF   DG  +   L
Sbjct: 123 VAAIPEPQQQIKQIAQQGQQAAGVVATVISATGSAVFQVVMMLIALFFMLVDGSRLVGWL 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D     L P   +++     K   S        A  +       Y +A  P+ V   + T
Sbjct: 183 DRHVP-LRPGLLRELIEDFSKTSVSVLTATLATAGIQTATALVGYLIARAPNLVFFTLAT 241

Query: 249 AIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++A++P  G       V + LL  G++   T L  WGA  + ++D   RP+L+ G ++L
Sbjct: 242 FVVALVPALGGAFMVVGVGLLLLATGHVLAGTFLVAWGAAVVSLIDNVARPYLLKGGMEL 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                FF L+GG+ T G +GL +GP+++  +  + K      
Sbjct: 302 HGGIVFFALIGGLATFGGIGLVLGPLIVTFLLAVLKMYEREY 343


>gi|315654678|ref|ZP_07907584.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
 gi|315491142|gb|EFU80761.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
          Length = 469

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 98/335 (29%), Gaps = 21/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +         +I+  L  + G F P   A  +     P     I  +       A++  V
Sbjct: 53  RFAFALAASTLIIFLLSLIAGVFMPTFLAFSLALAVRPASEWLIRHRW-PVGLAALVNIV 111

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  +  V L  +       + EL                 L                  
Sbjct: 112 LLFAILFVMLGLIAIAITAMVTELPRYGAKFQALYEHAINQLDRRGF------------- 158

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++    +         ++  FA++           I+  I  +      G ++  + 
Sbjct: 159 DTSAVLDSWKNVDINRIFSYLSGFANQISGAGTTLFFIIMVAIFVV------GDTVVVRR 212

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +     +   +    R     +R+ FL  T+      LV     +  GVP+    G++ 
Sbjct: 213 RAAELASYAPGFAIALRNFSLRVRTYFLMTTVFGAVVALVDVGILYAFGVPTPWTWGILA 272

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       +  L    ++ A  +F+   +   +    L+P + G  + L
Sbjct: 273 FVANYIPAVGFILSMIPPILLALALDGVWPAVGVFIGYMVASLLFLNILQPRIAGNAVGL 332

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +F  L+     MG LG  +   L      I+
Sbjct: 333 NATVSFLSLMVWSTVMGPLGAILAVPLTLFFKAIF 367


>gi|310640698|ref|YP_003945456.1| protein [Paenibacillus polymyxa SC2]
 gi|309245648|gb|ADO55215.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 361

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 93/298 (31%), Gaps = 9/298 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + FI    +  +     P++ +  + +   PI      + +   +   ++  + +  L  
Sbjct: 27  VSFIFSPLVSLVSLLIVPLMLSFFLYYLLRPIVDVMERR-KIKRSISILLIYLVIGVLLF 85

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +    ++     ++  L        +  +                      LS       
Sbjct: 86  LFSWGVWPTLRDQVTNLFENAPKLIKSLVDQLSQWRHNQSLRQVLPPGEDPLSQLSDTL- 144

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                        +  ++ +       + + +    I L++  ++G     ++ +     
Sbjct: 145 -------NEAFSTLSDYSVKLVSFVSYFFIVLATFPILLYYMLKEGSKFGPKMLNFFPKK 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +     ++   +   + S  +   +I +  GL++   + + G+P  + L VI+  +  IP
Sbjct: 198 YHKDALEVMEDIDSALSSFIVSRVLINVALGLMMFLGFLIIGLPYALLLAVISIFLNFIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               ++ +   + +    +   A    +   +   I D  L P + G  + +  L   
Sbjct: 258 YVGAVAASIPVVIIGFLESPSMALWSLVVVIVAQQIQDNWLSPIVFGKQLDIHPLTVV 315


>gi|239623509|ref|ZP_04666540.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521540|gb|EEQ61406.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 379

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 105/340 (30%), Gaps = 6/340 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + ++  +I     + L FL      FF P +   II   + P+      +        ++
Sbjct: 14  RLVLNIVIPLTGWILLCFLGPKILKFFMPFVIGWIIAMIANPLVRLLERRMRLVRKHSSI 73

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASEL 122
           +  V+ + L I  L  +       +   +  +               +       +  + 
Sbjct: 74  VIVVAALALVIGLLYLIISRSFALLYGFIKDLPALYAGIEGDVSRSMEQIDHVFQFLPDS 133

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +  S   +        +           A           + ++  I++ +FF  D  
Sbjct: 134 IQQTWSEIGNNLGTYLGKVVEGIASPTVEAAGSVARSIPAILVYMVVTILSAYFFIVDRD 193

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +I   + S        Y   +   V ++I   F+    I     L+L   + + GV    
Sbjct: 194 NILAFVKSHTPAWSQRYTSYLKGEVRRLIGGYFMAQFKIMAVVWLILTVGFLVLGVGYAP 253

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
               + A +  +P     +       + + G  +      L   +   +  + ++P LVG
Sbjct: 254 LWAFLIAFLDFLPVFGTGTALIPWGLIKLLGGEYAFAAGLLLIYVLTQVTRQLVQPKLVG 313

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             + L  L T   L  G +  G+ G+ +   +      ++
Sbjct: 314 DSMGLNPLLTLLLLYLGFKVNGIAGMILAVPIGLFFVSLY 353


>gi|95928937|ref|ZP_01311682.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
 gi|95134838|gb|EAT16492.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
          Length = 370

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/337 (18%), Positives = 111/337 (32%), Gaps = 16/337 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I ++      G F P+L +LI  F   P+ ++   +     T         +    ++  
Sbjct: 32  ITVLLRSAASGLFVPLLLSLIAAFLLDPLVNAMEKR-HIPRTRAIFSVFFMISATLLLLG 90

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
            +L  Y       L+S         I   R         +                    
Sbjct: 91  SWLIPYTQNMWDSLLSDFPRYTSQLITYLREAQASWQSRFPFLEQYDL-----------T 139

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             ++T     +     +     L     +I + I  FFF RDG +I + L SL  + +  
Sbjct: 140 QTVRTTAEQVLSFILVQTPKSALKLGSLMILVPIFSFFFLRDGTTIMRGLTSLAPNRYFE 199

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +S +V + +     G  I A   G+V+ +   L  +     LG+   I  +IP   
Sbjct: 200 MAHDLSFLVSRQMAHFVRGRIIEAAIIGIVVATGLSLTDIRYAPLLGLFAGITNLIPYIG 259

Query: 259 PISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTL-RPFLVGGPIKLPFLPTFF 314
           PI      I +              + L+  I   I+D  +  P L+     L  +    
Sbjct: 260 PIVGMIPGILIAAVDLGLGGQFWWIVILYILIAQVILDNFILIPILISRVANLHPVLVIL 319

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +V G +  G+LG+ IG  + +   + + E     + 
Sbjct: 320 AIVMGGKLYGVLGMIIGVPIASAFKIAFIEIRHYRRA 356


>gi|289676514|ref|ZP_06497404.1| PerM family membrane protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 356

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/348 (14%), Positives = 112/348 (32%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRMPEVA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + +V LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVADEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G+ G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGVWGIFFAIPLATLFKAVLDAWPR 347


>gi|295111677|emb|CBL28427.1| Predicted permease [Synergistetes bacterium SGP1]
          Length = 423

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 42/369 (11%), Positives = 101/369 (27%), Gaps = 29/369 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   M    G+M  +    +   L+   G F P++ A  +     P       + +    
Sbjct: 9   MLRHMKIIVGLMTILTAVALGFVLHLASGVFIPLVIAWFLLQIFRP-VLKLGDQLKLPPF 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  V + C+ ++ + F+    +   +                   L  +     + 
Sbjct: 68  LKIALVFVLLFCMTLIGVRFVASQAVEFGEVYQRFYPDLEPTIEKFTNTLMTLGFLPNSR 127

Query: 121 ELWTKHLSHPQSLKIL----------------------SETFLKTNGIDFIPRFASRFGM 158
                     + +                             L          +      
Sbjct: 128 PSVRSEEQEEEDVPRNTFILTAAASADSAPPALSGGSILMGELTKKLRTDWTSYVRYISE 187

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPAYWKKISRIVPKVIRSTF 215
           + +     ++  ++ L F   +   +  ++D              K I   +   I S  
Sbjct: 188 MAITLLSKLVLSLVFLMFMLLEAPYVVDKIDEAFRGPSARTGETVKSILATISSQISSYL 247

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
             +T+I++  GL          V       V+T ++  IP    I  T   + + I  + 
Sbjct: 248 GALTLISVATGLCAWVILTSCNVELATGWAVLTILLNFIPTVGSIIATVPPVVMAILQSP 307

Query: 276 F---NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                   + +        +   L P ++G  + L  +     L+      G+ G  +  
Sbjct: 308 TSLTMPLLVLVLLTAVQVSIGNILTPKIMGDRLGLSPVIILLSLLLWGVIWGIPGAILST 367

Query: 333 VLMALIAVI 341
            + +++ +I
Sbjct: 368 PIASILQII 376


>gi|254516312|ref|ZP_05128371.1| hypothetical protein NOR53_2523 [gamma proteobacterium NOR5-3]
 gi|219674735|gb|EED31102.1| hypothetical protein NOR53_2523 [gamma proteobacterium NOR5-3]
          Length = 368

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/339 (21%), Positives = 146/339 (43%), Gaps = 6/339 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  M +    +    + GF   +L A +    ++P+YS   +     +T  +++  
Sbjct: 12  RKSFVLVMTLAYTGLFFAMISGFAMALLLAAVFSGIAYPLYSWLSNVWGGRNTLASLMTL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  +   +VPL+ L      +  E+  +V    +  +   +  S +PG +  +E     L
Sbjct: 72  LISLLAIVVPLMLLLGLVADQALEVAEEVTPWIEQQLDQSQEPSALPGWVPYAEE----L 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +   +        N   ++    S      + + L++  ++ A+FFF   G ++ ++
Sbjct: 128 EPYRDRIMAKVAEFAGNAGVYLASGLSTLTQGTMSFFLNLFVILYAMFFFLISGSALIEK 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S    L      K+ ++   V R+T  G  II   +G + G  + +AG+ + V  G +
Sbjct: 188 IMSYAP-LSRVDKDKMLQVGLSVSRATVKGTLIIGAIQGALGGLGFAVAGIDAAVFWGAV 246

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+++++PG    + +    ++LLI G       L  W A  +  +D  LRP LVG   +
Sbjct: 247 MAVLSILPGIGATLVWAPAVVFLLISGETLVGLGLLAWSAGVVGTIDNFLRPILVGRDTE 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P L      +GG+   G+ GL +GP+L AL   +    
Sbjct: 307 MPDLLILLSTLGGLGLFGVAGLVLGPILAALFMTVLTIY 345


>gi|289423551|ref|ZP_06425352.1| permease [Peptostreptococcus anaerobius 653-L]
 gi|289156053|gb|EFD04717.1| permease [Peptostreptococcus anaerobius 653-L]
          Length = 387

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 102/330 (30%), Gaps = 14/330 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAVIATVSVM 71
                     P +    + +    + + +  K   +            T   ++   +V 
Sbjct: 39  LFNTFIAIIRPFIIGFSLAYLFNFMLAFYEDKIILNIAKKGISHRKMRTLSLLMTYFTVC 98

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L  + + F+       +  +++               L      +  S    + ++   
Sbjct: 99  ILVYLFIEFILPEVAASLSSIITDFPRIVNKLYLYTDSLIS---SIEISGPAKEFVTAKI 155

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                      TN + ++            +  L II  +  L           + + ++
Sbjct: 156 EEIGKQLMEFATNLMPYLANTLLMVLKSIWNLVLGIIISVYVLADKEGFYAMCKKFIRAV 215

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  Y   ++ +   +     +G  I +   G +     ++  +P  + +  I  + 
Sbjct: 216 FSISAGDYILYVTDLSNDMFGKFIVGKIIDSTIIGAIAFIVLYIVKMPYLILITFIIGVT 275

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P      SI L++  +   A  L +   I   +    + P ++GG + +    
Sbjct: 276 NIIPFFGPFIGAVPSIILVLFVSPIKALWLTIIIFIIQQLDGNVIGPKILGGSLGISSFW 335

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             F L+   +  GL+G+ +G  L A+I  +
Sbjct: 336 ILFSLLLAGKFFGLIGMVLGVPLFAVIHTL 365


>gi|269959013|ref|YP_003328802.1| putative permease [Anaplasma centrale str. Israel]
 gi|269848844|gb|ACZ49488.1| putative permease [Anaplasma centrale str. Israel]
          Length = 376

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 108/352 (30%), Gaps = 13/352 (3%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +      V ++ ++        A ++ +   P+ +   S         +     S + +
Sbjct: 21  LLGAGCAAVLVFVMRPVLPLCCVAAVLAYLLNPLVNRLES-IGLPRPVSSFAIIFSSVAV 79

Query: 74  FIVPLLFLFYYGMLEMKE----LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           F   L+ L      +       LV K+  A    I       D+                
Sbjct: 80  FATLLVLLVPVAYSQTLAMAKLLVDKLPFAGVESIKTALQAYDMLRYDGVIGTMNPAALS 139

Query: 130 PQSLKILSETFLKTNGIDF------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           P +L                     +     + G+        +   ++ LF+       
Sbjct: 140 PNNLFSSEHVEFIKLFDSLYKNFIKVAVRVVQSGVGIGTIAARVFITLLLLFYILGSWPI 199

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +    +    +   +      +  ++ +   G T + +   +     + + G+   + 
Sbjct: 200 VVKNALLMVPRHYLEGFSHCMSRIDSIVSAYIRGQTTVCLIMLIYYCICFAVVGLEYSLV 259

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRPFLV 301
           LGVI+ IM  IP   P+   A    L +      A    + L   +   +    + P L+
Sbjct: 260 LGVISGIMTFIPYVGPVLCAAFGACLALLQGFSWAGTAAVILVFVVGNVVESNIITPVLL 319

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              + L       G+V      GLLG  +   + A+++V+ + ++   K + 
Sbjct: 320 SKKLDLNPGWVVIGMVVFSAHAGLLGALVSIPVTAIVSVLAQFAVEKYKRSD 371


>gi|289628956|ref|ZP_06461910.1| PerM family membrane protein [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289651062|ref|ZP_06482405.1| PerM family membrane protein [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868046|gb|EGH02755.1| PerM family membrane protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 356

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+    +  L G  APV++ L++ F    + S    +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTLVLTLGGMLAPVIAGLVLAFLMHGLVSVLE-RLRLPEMA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     + + ++ LL L      ++  L ++          V   L +    + + E
Sbjct: 69  AVGLVFTLFIGVLLLFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   +                    F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLLAIEVARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I +           A   +++  + + I +   G  I     G V   A+   G+   
Sbjct: 181 HMIGRWARGYLPRE-RALINRVAEEMKRQIANYIRGKVIEIFICGGVTYIAFAALGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T     I L   G       L +   I   +    L P 
Sbjct: 240 ALLAMLVGISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L   +      
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 347


>gi|255035092|ref|YP_003085713.1| hypothetical protein Dfer_1300 [Dyadobacter fermentans DSM 18053]
 gi|254947848|gb|ACT92548.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 345

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 126/352 (35%), Gaps = 20/352 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              Q     ++  + ++    L  FF   L AL +       Y     K++ + +  A++
Sbjct: 8   RIRQVSFLLIVTALAIIVFKQLYIFFPGFLGALTLYILCRRYYFHLTEKRKWNKSLTAIL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V  M   + P+         ++  ++      NQ    + R L +  G          
Sbjct: 68  FMVLFMACIVAPVYLALQMVFQKVTGIMDNPEQVNQAIAAISRQLREWTGQDLL------ 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                             +       F             +++ ++   +F +++G S+ 
Sbjct: 122 ------------TKEATADMGKKAAGFIPAILNSSAMMLGNLLMILFLAYFMFKNGRSME 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + +D             ++     ++R+  LG+ +I++ +GLV    YW+ G+   V LG
Sbjct: 170 RTIDDFIPLKH-KNIDLLADETCGMVRANALGIPLISLIQGLVALLGYWVVGIEDFVLLG 228

Query: 246 VITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +IT   A  P     + +  + I+L  KG    A  L  +    +  +D   R   +   
Sbjct: 229 LITGFCAFFPVIGTALIWLPLVIFLFSKGESGKAIGLAAYSVTVIGNIDYVARITFLQKV 288

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             +  + T  GL+ G++  G  G   GP+L++ + ++ +        ++ + 
Sbjct: 289 GNVHPVITILGLIAGLKLFGFWGFIFGPLLISYLMLLVRIYKNEFSGSRSEP 340


>gi|89054550|ref|YP_510001.1| hypothetical protein Jann_2059 [Jannaschia sp. CCS1]
 gi|88864099|gb|ABD54976.1| protein of unknown function UPF0118 [Jannaschia sp. CCS1]
          Length = 382

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 105/321 (32%), Gaps = 14/321 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +L +   F  PV +A +  F                      ++ +  + +  + +  L 
Sbjct: 42  ALVWASDFLIPVTAACLGYFVLNRPRRWLARIGIPP-----FVSALLFVAILTLFIGLLL 96

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                   + +  +    +      +        +  + +  + +   Q  + +S   + 
Sbjct: 97  VQLSAPAAQFIEDLPSLIEQIQDKLQDAGGTLEAINDASVAAEEIVADQDQETVSVEVVS 156

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWK 201
                    FA+    +   +   I+F ++ LFF    G     + + S           
Sbjct: 157 D------TGFAATLFSMAPGFLSRIMFALLLLFFLVASGDMFFIKTVQSFDRFRDKRRAV 210

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   +   +     G+T+I  G G+ +  A  L G+P  +  G +   +  +P    + 
Sbjct: 211 EVMHAIEDRLGYYLGGITVINFGLGIAISIAMALWGLPGALVFGFMAFCLNFVPFLGGLL 270

Query: 262 F--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
               A ++  +     + A  +F    I   I  + + P L+   ++L     F  +   
Sbjct: 271 GASIAAAVAFVSLDGTWVAAGVFATYIILTSIEGQFVTPMLISRRMRLNTTVVFLTVAFF 330

Query: 320 VRTMGLLGLFIGPVLMALIAV 340
                ++G+ +   ++ +I +
Sbjct: 331 AWIWSVMGMVVALPILIVIKI 351


>gi|323359451|ref|YP_004225847.1| permease [Microbacterium testaceum StLB037]
 gi|323275822|dbj|BAJ75967.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 396

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 108/334 (32%), Gaps = 14/334 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + +++  +  LK    P+L A++I    WP +S     +        V+  +
Sbjct: 42  RLLVIAAALGVVIWVVIQLKLLVIPLLVAILITALVWPAFSFLQRHRWPK-WLAIVVTVL 100

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +    +    E   +  + VLA +                   +      +
Sbjct: 101 GTIAVISGLVWLAVWQISREFASVQERTVLAVEQFRQYL------------IDGPLHLSA 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +           + +   A   G         ++  +  L     DG  I +  
Sbjct: 149 QQIDDGLTQAGAFLQQQAELLWTGALAIGTTLGHVGTGVLLTLFILLCLLADGGGIWRWT 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L   +         R   + ++S      ++A  + + +G   +L GVP  + +GV+ 
Sbjct: 209 TRLFPRVARPAVDGAGRAGWRTVKSYARTQLLVATIDAIGIGLGAFLLGVPLSIPIGVLV 268

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP    + +        L+      A  + +       +    L+P L+G  +K+
Sbjct: 269 FLGAFIPFVGAVATGALAVFIALVYNGPLIALFMLIVVLGVQQVESHILQPILMGSAVKV 328

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L     + GG    G+ G      L A + V+
Sbjct: 329 HPLAVVLVVAGGAMIGGIAGALFAVPLAAFVNVV 362


>gi|218961458|ref|YP_001741233.1| hypothetical protein; putative membrane protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730115|emb|CAO81027.1| hypothetical protein; putative membrane protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 353

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/349 (17%), Positives = 123/349 (35%), Gaps = 4/349 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + I   +++ +I++ L+F       ++ A I  +   P  S F  K+        +
Sbjct: 1   MNWTKWIFYSLLLALIVLGLFFYHPIIYYLIYAFIFSYILDPFVSWFERKR-FPRWLAVL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASELW 123
              + +  +  +    L    + +   L + +    Q        L  I     +  EL 
Sbjct: 60  TIYLIIAGIIALFTSRLVPALVQQGNNLFNILSSGEQLTGQYIITLPFIRRIYEFLQELD 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +      + K++         +  IP+               I  + +  FF  +D + 
Sbjct: 120 AQIPGLGMAPKLIEILDQANVFLAKIPKLLIDNYKKIFSTISIIFTVPLISFFLLKDKYK 179

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + + +  +  + +      + R +   I +    +    I  G++  +A  + GVP  + 
Sbjct: 180 LRKGIVKMFSNRYFELCIIMMRKIDSTIGNFLRAILFEIIAVGILASTALTIVGVPYSIL 239

Query: 244 LGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +G    +  +IP   P      AV   L   G I +A  + L   I   I +  + P +V
Sbjct: 240 IGATAGVANIIPYFGPFLGGALAVVTVLFNGGTILSAITVILAMYIVQLIDNNIVYPVVV 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           GG I +  L     L+ G    G+L + I   L+ L   + K     +K
Sbjct: 300 GGTINMHPLLVLLTLIAGGWYGGILWMLISVPLVYLTYNLIKVLYTNLK 348


>gi|320546652|ref|ZP_08040964.1| permease [Streptococcus equinus ATCC 9812]
 gi|320448707|gb|EFW89438.1| permease [Streptococcus equinus ATCC 9812]
          Length = 371

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 109/331 (32%), Gaps = 12/331 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFI----------SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           P +    I +    + S +              +       ++A ++ M L       + 
Sbjct: 41  PFMIGAGIAYIVNIVMSLYEMIFTRLIKNKYLLKLKRAVSMILAYLTFMLLISWLFSIVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+          I        +   +      +   +            + 
Sbjct: 101 PDLIASINSLLKIDTSGFSKFIKEVSDNKAVQEFLAYFGSSSDITATLSDYSKQILNQVL 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               + I    S      L+  +S +F I  L    + G   +  +DS     +      
Sbjct: 161 AVLTN-ILTSVSTIASTLLNVFISFVFSIYVLASKEQLGRQFNLLIDSYLG-KYAKTVHY 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +  I+ K     F+G T+ A+  G +     +L  +P    +G++ A  A+IP       
Sbjct: 219 VLDILHKRFHGFFVGQTLEAMILGSLTAIGMFLFKLPYAATIGILVAFTALIPVVGAYIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L+   ++  A    ++  +        + P +VGG I LP +     +  G   
Sbjct: 279 VTIGFILIATQDVSQAIFFVIYLVVLQQFEGNIIYPRVVGGSIGLPGMWVLMAITIGASL 338

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+LG+ +   L A +  + K+++   ++N+
Sbjct: 339 WGVLGMLVAVPLAASLYQMIKDNVAKRQKNR 369


>gi|281180503|dbj|BAI56833.1| conserved hypothetical protein [Escherichia coli SE15]
          Length = 349

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++   + +IL  ++        +L AL       P+ + FI +  +       +A  
Sbjct: 12  RILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++ L  L         E +S +   N+        L ++   +       + L 
Sbjct: 67  IVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQ 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S K+++ T     G+           M  +     +  +   + F   +       L
Sbjct: 127 RMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGL 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                               K +       T++++  G+++     L GV   +   V+ 
Sbjct: 187 HRAL----------------KGVSHYLALKTLLSLWTGVIIWLGLELMGVQFALMWAVLA 230

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + +
Sbjct: 231 FLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGM 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +  F  L+     +G +G+ +   L ++  +
Sbjct: 291 STMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|307152495|ref|YP_003887879.1| hypothetical protein Cyan7822_2636 [Cyanothece sp. PCC 7822]
 gi|306982723|gb|ADN14604.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 370

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 119/338 (35%), Gaps = 17/338 (5%)

Query: 8   PQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + ++ W+++ I        L ++    + +L+A ++ F       +   K        A
Sbjct: 9   QKFLITWLLILITSWLTVKTLSYVGELISILLTAALMAFLLNYAVMAL--KLILPRPIAA 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V   +    +FI+  + L    +++ ++L+  +      G                    
Sbjct: 67  VFVYLGAALIFIIVGVTLLPPVVIQGRQLLIGLPELIAQGQQQLNTFQAWSVDHNLPFDL 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               S   +        + + G+  +            ++ L +I +++  F+   DG  
Sbjct: 127 QLITSDLFNRIQTQARIIASTGLGLVLGT--------FNWFLDVILILVISFYMLIDGER 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L S      P    +++  + K ++    G  I+ +   + L  A+ L   P  + 
Sbjct: 179 LWDGLTSFF---SPKIQDQLTISLEKNLQRFVTGQLILGLFMSVSLTVAFRLLNTPYFLL 235

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             V   +M ++P         + + +L   N + A  + +   I   I D  + P ++G 
Sbjct: 236 FAVFIGLMELLPFIGATLGIGIVVIILAFINWWLAVKVLIVSVIIQQIKDNLISPRIMGN 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              L  +  F  L+ G +  G LG+ +   L  ++  +
Sbjct: 296 LTGLSPVIIFMALLLGAKIGGFLGVILAIPLTGVVKGL 333


>gi|260857580|ref|YP_003231471.1| putative inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|260870199|ref|YP_003236601.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|257756229|dbj|BAI27731.1| predicted inner membrane protein [Escherichia coli O26:H11 str.
           11368]
 gi|257766555|dbj|BAI38050.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323154313|gb|EFZ40516.1| hypothetical protein ECEPECA14_4004 [Escherichia coli EPECa14]
 gi|323174113|gb|EFZ59741.1| hypothetical protein ECLT68_1326 [Escherichia coli LT-68]
 gi|323178999|gb|EFZ64573.1| hypothetical protein ECOK1180_2074 [Escherichia coli 1180]
          Length = 349

 Score =  108 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       IA   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----IAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|194333691|ref|YP_002015551.1| hypothetical protein Paes_0858 [Prosthecochloris aestuarii DSM 271]
 gi|194311509|gb|ACF45904.1| protein of unknown function UPF0118 [Prosthecochloris aestuarii DSM
           271]
          Length = 402

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 112/347 (32%), Gaps = 4/347 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +   +     L G   P + AL++ F   P+ +  + +        A + TV
Sbjct: 53  ERLFWGLNILFGIWLFSELSGLLTPFIIALVLAFLFEPLMNGLL-RLNMPRLLSAFLITV 111

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   ++ +  L      +M    S V L   +      W+       W S        
Sbjct: 112 FGVGGIVLMVALLSPEIGRQMTAFGSIVPLIPDYLQAFINWIFSFEIFTWFSIDVDAVKQ 171

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H           +     +F          +       I+   +  +F   D    S  +
Sbjct: 172 HIIQSINEQLDNIGMLASNFTQTLWKSIPKVITTITTIILLPFLTFWFLN-DFNRFSDAM 230

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         ++   +   ++     G  I+ I E  +  + + + G+   + LG+++
Sbjct: 231 ARMLNKKPALSIRRYVPMAKDILNQYIRGQLIVMIIEITLYSTFFSIIGINYSLLLGILS 290

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
                +P     +  A++  ++  G+          L       +    + P +VGG ++
Sbjct: 291 GAALWLPYIGISTAIALTSLVISLGSNPMEQFVWAGLTYLSIQALEILFMVPKIVGGKVQ 350

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L  +  F  +       G+ G+ I   + A I  + +E +   K  +
Sbjct: 351 LNPIILFLSIFTFGYFFGIGGILISIPVSAFIIALVREKLYQEKSER 397


>gi|330909515|gb|EGH38029.1| putative PerM family permease [Escherichia coli AA86]
          Length = 349

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 112/333 (33%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++   + +IL  ++        +L AL       P+ + FI +  +       +A  
Sbjct: 12  RILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++ L  L         E +S +   N+        L ++   +       + L 
Sbjct: 67  IVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQ 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S K+++ T     G+           M  +     +  +   + F   +       L
Sbjct: 127 RMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGL 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                               K +       T++++  G+++     L GV   +   V+ 
Sbjct: 187 HRAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLA 230

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + +
Sbjct: 231 FLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGM 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +  F  L+     +G +G+ +   L ++  +
Sbjct: 291 STMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|189500521|ref|YP_001959991.1| hypothetical protein Cphamn1_1589 [Chlorobium phaeobacteroides BS1]
 gi|189495962|gb|ACE04510.1| protein of unknown function UPF0118 [Chlorobium phaeobacteroides
           BS1]
          Length = 355

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 122/345 (35%), Gaps = 4/345 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   + +   +     L G  AP + A ++ +   P+ +  + K +      A++ T  
Sbjct: 4   RLFWGINILFGIWIFSELSGLLAPFIIAFVLAYLFEPLMNFLL-KNQIPRVLSALLITFF 62

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +    + ++ L      ++      + +   +   V  W+       W S       S+
Sbjct: 63  GVGGITLVIVLLLPEIASQISAFAGIIPMIPGYLQNVINWVFSFEVFSWFSIDIESITSN 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +L       + +   +F          + +    +++ +    F+F  D    S  + 
Sbjct: 123 INALFKKQFEDIGSLATNFTQTILKSIPKV-ISAITTVLLLPFLTFWFLNDFDKFSGAIR 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L      +   K   +  ++      G+ I+   E ++  + + + G+   + LG+I+ 
Sbjct: 182 TLLNKRPDSPVHKYILMAREIFNQYVRGLIIVMTIEMVLYSTTFSIIGLNYPLLLGMISG 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIF--NATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +P     +   ++  ++  G+        + L       +    + P +VGG + L
Sbjct: 242 AALWLPYIGISTAILLTSLVIALGSNPAEQFFWVGLTYLSIQALEILFMVPKIVGGKVHL 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +  F  ++      G+ G+F+   + A I  + +E + +  E 
Sbjct: 302 NPIILFLSIILFGYFFGIPGIFVSIPVSAFIVAVIREKLYSSTET 346


>gi|157157615|ref|YP_001464939.1| hypothetical protein EcE24377A_3956 [Escherichia coli E24377A]
 gi|170018294|ref|YP_001723248.1| hypothetical protein EcolC_0242 [Escherichia coli ATCC 8739]
 gi|191169693|ref|ZP_03031381.1| putative membrane protein [Escherichia coli B7A]
 gi|209920933|ref|YP_002295017.1| hypothetical protein ECSE_3742 [Escherichia coli SE11]
 gi|218697157|ref|YP_002404824.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|256020822|ref|ZP_05434687.1| hypothetical protein ShiD9_18035 [Shigella sp. D9]
 gi|307311859|ref|ZP_07591497.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|331685120|ref|ZP_08385706.1| putative membrane protein [Escherichia coli H299]
 gi|157079645|gb|ABV19353.1| putative membrane protein [Escherichia coli E24377A]
 gi|169753222|gb|ACA75921.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|190900266|gb|EDV60127.1| putative membrane protein [Escherichia coli B7A]
 gi|209914192|dbj|BAG79266.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|218353889|emb|CAV00291.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
 gi|306908003|gb|EFN38503.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|315062753|gb|ADT77080.1| predicted inner membrane protein [Escherichia coli W]
 gi|320199651|gb|EFW74241.1| Putative PerM family permease [Escherichia coli EC4100B]
 gi|323182939|gb|EFZ68340.1| hypothetical protein ECOK1357_3827 [Escherichia coli 1357]
 gi|323376659|gb|ADX48927.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323944479|gb|EGB40553.1| inner membrane protein YhhT [Escherichia coli H120]
 gi|324116521|gb|EGC10439.1| inner membrane protein YhhT [Escherichia coli E1167]
 gi|331077491|gb|EGI48703.1| putative membrane protein [Escherichia coli H299]
          Length = 349

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|116627830|ref|YP_820449.1| permease [Streptococcus thermophilus LMD-9]
 gi|22218143|gb|AAM94594.1|AF448502_16 epsX [Streptococcus thermophilus]
 gi|116101107|gb|ABJ66253.1| Predicted permease [Streptococcus thermophilus LMD-9]
 gi|312278395|gb|ADQ63052.1| Predicted permease [Streptococcus thermophilus ND03]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 117/371 (31%), Gaps = 29/371 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFA-----------PVLSALIIGFTSWPIYSSFISKK 55
                +  +++F     +Y                  P L    I F    + S +    
Sbjct: 4   TKNQFIWLVVLFFSCFLIYTYWETVVSICNKIFVASQPFLFGAGIAFVVNILMSFYEKIL 63

Query: 56  ----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
                     +       ++A  ++  +F   +  +    +  +  L+S+   A  + I 
Sbjct: 64  IKFIPFGFITKIKRPVSLLLAFATIGLIFTWVVFTVLPDLIDSINTLISQDRSAINNLIN 123

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                  +   +      T+      S        +     +F+    S          +
Sbjct: 124 WLLKNKSLQKIIQDLGGVTQVRELINSYSAQLLQQIMNGLTNFLTSLTS-----LPSTLI 178

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           ++   I+   +       +  Q++ L +     +   +  +  I+    R+ F+  +I A
Sbjct: 179 NLFISIVFSCYVLVGKEKLGSQVNRLVDVYLGRYGKTFHYVVAILNNRFRNFFVYQSIEA 238

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
              G +      +   P    + ++    AMIP         +   L++  ++  A    
Sbjct: 239 CILGTLCYIGMRIFNFPYAATISILIGFSAMIPVLGAYIGVTIGTILIMTHSVTLALLFV 298

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +  I        + P++VGG   LP +     +  G    G+LG+ +   + A +  I 
Sbjct: 299 AYVVILQQFEGNLIYPYVVGGSTGLPVVWVILAITIGSALGGILGMLVSVPVAATLYQIV 358

Query: 343 KESIMAIKENK 353
           K++++  ++ K
Sbjct: 359 KDNVVTREKAK 369


>gi|314966308|gb|EFT10407.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
          Length = 386

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 119/352 (33%), Gaps = 14/352 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +  +L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQALHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K   
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKA-- 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I   A+  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 158 ----------EAAMAGSQGRIASTAAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 207

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 208 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 267

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 268 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMRIEGHVLQPFLLGKAVSI 327

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   S +
Sbjct: 328 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPSHD 379


>gi|313497077|gb|ADR58443.1| Permease [Pseudomonas putida BIRD-1]
          Length = 365

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 131/344 (38%), Gaps = 3/344 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +++ +    + F   +L A+I+  T +P++     +      + A +  + V+ L 
Sbjct: 24  LVAALVIFAFQVFQPFLELMLWAVILAVTLYPLHCRIQRRTGLKQGYAATLVVLLVLVLL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP+  +       +  LV+ +          P  ++  P             S   +  
Sbjct: 84  LVPIYLVVMSIGESVDSLVTLLKSGAWSVPVPPDSVAAWPLIGPKVYALWLAASENMASV 143

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +             +   A+  G  FL +  +II   + + F  R               
Sbjct: 144 LNQWMPQIKGAGLTVLGAAASAGGAFLLFIGAIIISGVIMAFGERGE---IATQRIAMRV 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ + 
Sbjct: 201 SGAERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVVKGVPGAGMLAIVILMLGIA 260

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              A +    V IY+        AT +F        + D  L+P L+G  + +P      
Sbjct: 261 QAPATLVTLPVIIYVFNAEGFTVATIIFAIYTFVAGLADNVLKPLLLGRGVDVPMPVVLI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G +GG+   G++GLFIGPV++ +  V++ + +      +    +
Sbjct: 321 GALGGMVVKGIIGLFIGPVILGVTYVLFWQWVALQVPEQPAPPA 364


>gi|226228425|ref|YP_002762531.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
 gi|226091616|dbj|BAH40061.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
          Length = 442

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/387 (12%), Positives = 96/387 (24%), Gaps = 53/387 (13%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
             L   + +      V  A + G             +       + +  +  +      L
Sbjct: 37  FGLQLFWSVSSLVFLVFLATLFGLAVGRGVDYLERYR-IRRGIGSALIVLGALGAIGGTL 95

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA------------------- 119
            +     + + KEL  +   A                G                      
Sbjct: 96  AWTAPTLIEQGKELQREFPAALDKLQTWIDSKRGGLLGAIIASATHTNGTGANTGATASA 155

Query: 120 ---------------------------------SELWTKHLSHPQSLKILSETFLKTNGI 146
                                            + +  +           +     ++  
Sbjct: 156 AQTNTPADGAANAAALPPAARANANRAAAAGSQNPVVQQRADSGAVSPTEAIKRRLSDSF 215

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
               ++   F    L    + + M+    +   +       L +       A  + +   
Sbjct: 216 AGATQYLFSFVSSTLAALAAFVLMVFLAMYIGAEPHVYRGWLLATVPATSRAQVRIVLAE 275

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V  V+R   +   I  +  GLV      L GV +  AL  I  +M  IP   PI     +
Sbjct: 276 VATVLRKWLVTQLIAMVVIGLVSMVVLLLLGVKAAFALAFIAGLMEFIPTVGPILAAIPA 335

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I +    +   A  + L      FI +  L P+L+   + LP   T           G +
Sbjct: 336 IAMGFVDSPEKAAIVALAYWGIQFIENNLLIPYLMRDGMDLPPAITLVAQTLMTLLFGFV 395

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENK 353
           GL +   L A + V  +         +
Sbjct: 396 GLMVAVPLTAAVLVPLRMMAEKENARE 422


>gi|58697572|ref|ZP_00372799.1| hypothetical protein WwSim0537 [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58535933|gb|EAL59683.1| hypothetical protein WwSim0537 [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 333

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 117/333 (35%), Gaps = 3/333 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + I    I+  I+  L+ ++    P L +++I +   P+   F   +    +   +  
Sbjct: 2   DSRHITICFILLFIIGMLFLMRPMIFPCLISVVIAYLFNPLVVKFEKYR-IPRSCSVIFI 60

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + ++  FI+ + F+     +++  +++ +V                   +   +    H
Sbjct: 61  ILILLIAFILVITFVLPIIYVQITSILNFLVSKVPSLKLKVIPSVLEFLNIKIEDSLFDH 120

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           LS   +    +      N +D    F  +      +    ++   +  F+  RD   I +
Sbjct: 121 LSKNLAENYSNYVSYFMNALDIASNFIIQVLSSSFNTVSLMVITPVVFFYILRDWPLIIE 180

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +   L    +          V  +I +   G   + I   +    +  + G+   + +G+
Sbjct: 181 KASKLIPIPYRGKIADYFSKVDFIISNYLKGQVNVCIVMMVFYSVSLSIIGLEHSIVIGI 240

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++ ++  IP   P+ +T +     I      F +  + L   +   I    L P L+G  
Sbjct: 241 LSGMLTFIPYVGPLLYTIIGFLSAITQFSGWFESAAVLLLFGVGQLIDSNILVPLLIGKK 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
           + +       G+       G  G+ +   ++A+
Sbjct: 301 VHIHPTVIILGITICASYFGFTGILLFIPIIAM 333


>gi|228993129|ref|ZP_04153051.1| hypothetical protein bpmyx0001_38650 [Bacillus pseudomycoides DSM
           12442]
 gi|228766588|gb|EEM15229.1| hypothetical protein bpmyx0001_38650 [Bacillus pseudomycoides DSM
           12442]
          Length = 315

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 106/312 (33%), Gaps = 11/312 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L A  I +   P+      K+    T   ++  +         +       + +++
Sbjct: 6   ITPFLIACFIAYLLHPLIEKLY-KEGMPRTLAILLIYILFFGGLGYGIYKGTPVVIAQLQ 64

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E+  +     +        +++           T +       K+          I  + 
Sbjct: 65  EINKQFPQFMKMYDSWMDGVTE----------QTDNFPSFIHEKVKQIFVGIEMKIQALL 114

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
                     LD  L I  +   +F+  +D          L    + +  + +++ + K 
Sbjct: 115 NKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHVFWKLVPSKWRSTGQVLAKEIDKS 174

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           + S   G   + +  G V   ++W   +   + LG+I  +  +IP   PI     ++ + 
Sbjct: 175 LGSYIRGQLFVCLVLGGVSALSFWFIAMKYPLLLGIIVGVTDIIPYFGPILGAIPTLMIA 234

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
              +        +  AI  F+    L P++VG  +++  +     L+ G    G++GL I
Sbjct: 235 ATVSTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEIGGIVGLLI 294

Query: 331 GPVLMALIAVIW 342
              ++A+I  + 
Sbjct: 295 AVPILAVIRTVI 306


>gi|313156951|gb|EFR56384.1| putative membrane protein [Alistipes sp. HGB5]
          Length = 382

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/344 (16%), Positives = 128/344 (37%), Gaps = 20/344 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +I+ + +     L  F   +L A  I            + +    +  A +     +
Sbjct: 31  LFVLILGLGITICIELTPFLGGLLGAATIYVLLRRQMQVLTACRRWRRSLAASLLLAEAV 90

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             F+VP+  + +  + +++++  +          +   + +  G     E          
Sbjct: 91  LCFLVPISLIVWMVVNQVQDITLRPDSIITPLKHIAALIHEKTGYNLWQEEN-------- 142

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                      ++ I  IP+          D+ ++I+ ++  L+F    G  + +    +
Sbjct: 143 ----------ISSMIGMIPKLGQWVVSSIFDFGVNIVVLLFVLYFMLIGGRRMEEYCREI 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +    + R V  ++RS  +G+ ++A+ +G+V    Y + G PS +  GV+T   
Sbjct: 193 LPFDS-SVSGSVMREVHMIVRSNAIGIPLLAVVQGIVAYIGYLIFGAPSPLFWGVLTCFA 251

Query: 252 AMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +IP     + +  ++ Y+ + G    A  L L+G + +  VD  +R  +         L
Sbjct: 252 TIIPIFGTALVWLPLAGYMALAGEWGPAVGLTLYGGLVVTHVDNVVRFVMQKKLADTHPL 311

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            T FG+  G+   G +G+  GP+L+ +             +   
Sbjct: 312 VTIFGVFIGLSLFGFMGVIFGPLLLEMFVFCVNIFKKRYLDGTP 355


>gi|311031355|ref|ZP_07709445.1| Predicted permease [Bacillus sp. m3-13]
          Length = 373

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 107/337 (31%), Gaps = 10/337 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            S ++L     P + AL++ F   P+ +          +    ++ +++    +  +  L
Sbjct: 24  FSFFYLFSIAYPFIIALVLAFLINPLVNLLEKNGRLPRSLAVFLSIMALFATVVGVVTLL 83

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +   + L   V    +  +               +++ T   S  +  +    T +
Sbjct: 84  IVEIVSGTEYLAKVVPGHFETLVVYVEQFVVNNILPLFNQVSTMFHSLEEGQQQSLLTNI 143

Query: 142 KTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  G          I        +           +IF ++A FF  +D + +  +   +
Sbjct: 144 ENIGGTVATTVGEFIQSFLTNLPKLLTWIPSVATVLIFSLLATFFISKDWYKLRGRFKKI 203

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     K+   + K           +     +++     +  V   + + +I  ++
Sbjct: 204 TPVKAQGSLTKVFVSLKKAFFGFMRAQATLISITTIIVLIGLLILRVEYAITVALIIGLV 263

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP           I  L                + + +  + + P ++   I L  L 
Sbjct: 264 DLIPYLGTGLIFVPWIIFLAISGNLPLAIGLGILYLIVIVQRQLMEPKILSSSIGLDPLA 323

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T   L  G + +G LGL +GPV + +   +W   ++ 
Sbjct: 324 TLVSLFVGFQLIGFLGLIVGPVTVVIFNTLWNAGVIK 360


>gi|309972500|gb|ADO95701.1| Putative permease [Haemophilus influenzae R2846]
          Length = 348

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 115/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     I     LS         
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKILLSQRINDLTALSQRF------ 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 113 -----NLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S       A  ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAAKEERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|302380731|ref|ZP_07269196.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
 gi|302311674|gb|EFK93690.1| putative membrane protein [Finegoldia magna ACS-171-V-Col3]
          Length = 395

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 112/325 (34%), Gaps = 4/325 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +      +L  +I+ +   P+   F +K     +F  +I  V V+ L I+  + +    
Sbjct: 70  VIYHTINTLLIGIILSYIINPLVKYFENK-GIRRSFAILIIYVIVIFLIILLGMIVVPQT 128

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++K+++  +             ++D    ++        +       +  +       
Sbjct: 129 IQQIKKMIISLPGFMADISI---KVNDFNRKIFKEYPNVSKIMSNAMQTVNQKLGTIQTS 185

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  +               L II + +  F+   D       +     +     +  +  
Sbjct: 186 ILDMLSQTGNITGSIFTNLLRIILIPVVSFYMLLDKEKCIDFIMGFIPNKNKDKFLSVCN 245

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K       G  I+AI  G++   A  L  V   + +G++T +  +IP   P      
Sbjct: 246 DMDKAYSEFIRGRLIMAIFVGVLTAIALILMRVDFAIIIGILTMVGDIIPYIGPFIAVTP 305

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L    +   A  + +      +I +  L P L+G  I +  L     L+ G    G+
Sbjct: 306 AFILAFLDSPIKAVVVVIVFVSIQWIENNILAPKLLGSKIGINPLLVIVSLIIGGGMFGV 365

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
           +G+ +    +A I +++      IK
Sbjct: 366 VGMILSVPFVATIKILYLHFKDKIK 390


>gi|256826100|ref|YP_003150060.1| putative permease [Kytococcus sedentarius DSM 20547]
 gi|256689493|gb|ACV07295.1| predicted permease [Kytococcus sedentarius DSM 20547]
          Length = 398

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 21/342 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++    + II   +    G   P+  AL +  T++P+ +     K         +AT++
Sbjct: 33  ALVGLAALVIIGAGIRSQAGMLGPMFLALTLVITAYPMVTWMRRHKVPGP-----LATLA 87

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +      L  + +  +  +  LV  +    + G  +                    L+ 
Sbjct: 88  SLLAIYAVLAAIAWSMVWSVLRLVEVMPEYVEQGTQLYD-------------QTISQLAR 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               +   E  L       +                 +  ++I L F   D  S+  ++ 
Sbjct: 135 YGVEESQLEDLLTNVEPGQVAGVVRNLAGQLSGGASLLTLLVIGLIFLVLDTGSMEARMR 194

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L +               + +RS +L  T+  I   LV     W  G+P  +  GV + 
Sbjct: 195 VLADQ--RPGAAAAFGDFARRVRSYWLVTTVFGILVALVDVVFLWALGIPLAITWGVFSF 252

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    +      ++  L++   F A  + +      F+    ++P + G  + L 
Sbjct: 253 VTNYIPNVGFVLGLIPPTLIALLEKGPFIAVVVAVGYWAINFVFQTIIQPRVTGDMVGLN 312

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               F  L+     +G LG  +          +  + I   +
Sbjct: 313 ATVIFVSLIVWAYLLGPLGALVAVPATIFAKSLLVDHIPGNR 354


>gi|253997450|ref|YP_003049514.1| hypothetical protein Mmol_2085 [Methylotenera mobilis JLW8]
 gi|253984129|gb|ACT48987.1| protein of unknown function UPF0118 [Methylotenera mobilis JLW8]
          Length = 351

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 78/354 (22%), Positives = 158/354 (44%), Gaps = 6/354 (1%)

Query: 5   MLNPQGIMRWM-IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M+N   I R   I  +I+  ++ L  F A +L A II   +WP+Y        +     A
Sbjct: 1   MINTNQIARIASISLLIVGCVFVLYPFMAAMLFAAIICVFTWPLYQRVWLLFGKRDMLAA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWASEL 122
            + T+ ++   I+P+ +L          ++ +     Q   PV P WL ++P    +   
Sbjct: 61  AMMTLLLLFAMIMPMAYLAANLADSATLMLDEAQAVLQSMQPVAPTWLKNLPIIGESLAE 120

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             + +       +     L     + I  F  +   + +   + ++ ++   FFFYRDG 
Sbjct: 121 SWQRVMASHEELMH----LLNQYAEPIRVFLLKVVQMVMGGFVQLVLVVFVAFFFYRDGT 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   + S+   L     +++  +    ++   LG+   A+ +  V    +WLAG P+ +
Sbjct: 177 KLVAAVTSMVRRLGGELGQEMLVLSCNTVKGVMLGVFGTALAQASVGLFGFWLAGAPAPL 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L + T  +++IP G P+ +   S++L   G+   A  L ++G + + +VD  ++P L+ 
Sbjct: 237 LLALATFFLSVIPVGPPLVWGGASLWLFNHGDQGWAIFLLVYGLLVISMVDNIVKPILIS 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               LP L    G++GG+   G +G+F+GP L+A+   +    +    +  +++
Sbjct: 297 HSSHLPLLLVVLGVLGGILAFGFIGIFLGPTLLAVGLTLVSHWVTLQNKRADEV 350


>gi|296135512|ref|YP_003642754.1| protein of unknown function UPF0118 [Thiomonas intermedia K12]
 gi|295795634|gb|ADG30424.1| protein of unknown function UPF0118 [Thiomonas intermedia K12]
          Length = 352

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/354 (13%), Positives = 108/354 (30%), Gaps = 8/354 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T      ++  +I  + L  ++ L     P L  L + +   P+      ++     
Sbjct: 1   MLLTPPVKNALIWLVIGLVALWLIWLLGSILMPFLVGLTLAYVLHPLVERL-KRRRIPRA 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +A +  + LF+   L L       +  +  K  L  Q  I         P      
Sbjct: 60  LGAAVAIIVAIGLFVGLFLLLVPVVTEIVPLIREKFPLLLQTIINW-----GTPLLARFD 114

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +  Q       +    +    + R AS  G+  L    ++  + +  F+   D
Sbjct: 115 IHVKFDTASVQQTLSKYLSAHGEDWAGLLLRSASTGGISLLVLLGNLTLIPVVAFYLLLD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                 ++  L                  ++     G  ++ +           +AG   
Sbjct: 175 WTPTLVRIRGLIPPKHRDAVLSFFHDCDVILGQYLRGQLLVMLILAFYYSLGLVIAGFNL 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+ T +   +P         +++        + +    + +   I   I    + P
Sbjct: 235 ALPVGIFTGLAVFVPYVGFGLGLLLALLAGALQFLSWYGVIAVAIVYGIGQLIESMYITP 294

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             VG  I L  L   F L+      G  G+ +     A++ V+ +  +   +++
Sbjct: 295 KFVGESIGLHPLLVIFILLAFGTLFGFWGILLALPAGAVLLVVVRRLLAWYRQS 348


>gi|237733694|ref|ZP_04564175.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229383292|gb|EEO33383.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 104/335 (31%), Gaps = 11/335 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE----------ESSTFLAVIATV 68
           IIL     +     P L  ++I F    +                          +++ +
Sbjct: 30  IILDIFNSILAVIMPFLLGIMIAFILNVLMIRIEKILSRFILDKKYTSFKRVISIIVSLL 89

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +  + +  +       +K +V       +          +    +    + +  L+
Sbjct: 90  IVIGVIGIIITLIIPELTNAIKVIVKSFPETFEQLQVWINQNGNSFPQLETW-INSIDLN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S          T  +       S F    L+  + I+F +  L           + +
Sbjct: 149 SIASELSGLFKIGLTGMLGSTVDVISMFFTSILNLVVGIVFALYILMSKETLKRQSHKLI 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D+           ++  +      +  +G T+ A   G +      +  +P    +G + 
Sbjct: 209 DAYIPKRISVKLLEVGTLARTTFSNFVIGQTVEAFILGTLCAVGMAVLNLPYAPMVGSLV 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I A +P         +  ++++  +   A    ++  +   +    + P +VG  + LP
Sbjct: 269 GITAFVPIVGAFIGGGIGAFMILTVDPMQALIFIIFLVVLQQLEGDLIYPRVVGSSVGLP 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +   F +  G    G+ G+     +++++  + K
Sbjct: 329 SIWVLFAVTVGGGLWGITGMLFSVPVLSVVYALIK 363


>gi|193061710|ref|ZP_03042807.1| putative membrane protein [Escherichia coli E22]
 gi|194427052|ref|ZP_03059604.1| putative membrane protein [Escherichia coli B171]
 gi|260846258|ref|YP_003224036.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|192932500|gb|EDV85097.1| putative membrane protein [Escherichia coli E22]
 gi|194415013|gb|EDX31283.1| putative membrane protein [Escherichia coli B171]
 gi|257761405|dbj|BAI32902.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|323162714|gb|EFZ48553.1| hypothetical protein ECE128010_1120 [Escherichia coli E128010]
          Length = 349

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       IA   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----IAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|323966139|gb|EGB61576.1| gyhhT [Escherichia coli M863]
 gi|323974884|gb|EGB69995.1| gyhhT [Escherichia coli TW10509]
 gi|327251111|gb|EGE62804.1| hypothetical protein ECSTEC7V_4098 [Escherichia coli STEC_7v]
          Length = 349

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|215488750|ref|YP_002331181.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|293412895|ref|ZP_06655563.1| conserved hypothetical protein [Escherichia coli B354]
 gi|312968213|ref|ZP_07782423.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|331665083|ref|ZP_08365984.1| putative membrane protein [Escherichia coli TA143]
 gi|215266822|emb|CAS11263.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|291468542|gb|EFF11035.1| conserved hypothetical protein [Escherichia coli B354]
 gi|312287038|gb|EFR14948.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320194024|gb|EFW68657.1| Putative PerM family permease [Escherichia coli WV_060327]
 gi|323188935|gb|EFZ74219.1| hypothetical protein ECRN5871_2527 [Escherichia coli RN587/1]
 gi|331057593|gb|EGI29579.1| putative membrane protein [Escherichia coli TA143]
          Length = 349

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|126174019|ref|YP_001050168.1| hypothetical protein Sbal_1792 [Shewanella baltica OS155]
 gi|153000310|ref|YP_001365991.1| hypothetical protein Shew185_1785 [Shewanella baltica OS185]
 gi|160874944|ref|YP_001554260.1| hypothetical protein Sbal195_1829 [Shewanella baltica OS195]
 gi|217973659|ref|YP_002358410.1| hypothetical protein Sbal223_2493 [Shewanella baltica OS223]
 gi|125997224|gb|ABN61299.1| protein of unknown function UPF0118 [Shewanella baltica OS155]
 gi|151364928|gb|ABS07928.1| protein of unknown function UPF0118 [Shewanella baltica OS185]
 gi|160860466|gb|ABX49000.1| protein of unknown function UPF0118 [Shewanella baltica OS195]
 gi|217498794|gb|ACK46987.1| protein of unknown function UPF0118 [Shewanella baltica OS223]
 gi|315267180|gb|ADT94033.1| protein of unknown function UPF0118 [Shewanella baltica OS678]
          Length = 360

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 119/360 (33%), Gaps = 11/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+    + +YF  G  AP+L AL++ F      +  + K   + T 
Sbjct: 10  QERFSDPQAVTLMAILVGFALVIYFAAGLLAPLLVALVLAFLLEWPVAQML-KVGINRTA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + ++    L      +   L++ +      G+   + L +        E
Sbjct: 69  GASLVIVLFLGIVVLLTFGLIPSVWRQGVSLIADLPSMIDKGLLTIQTLINQYPQFINPE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   + L               I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QLDLMVGELKKLLDTQHVLD-------IAKQLIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                +K+   + + I +   G  I  +  G+     + + G+   
Sbjct: 182 DQLISGSKRFFPA-NRQLARKVWFEMHQQIFNYIRGKVIEIVVVGVATYILFAVMGLRYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V LGV+T +  +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 VLLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFSSEFGYLMLGYGIIQALDGNLLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     ++      G+ G+F    L +L+  +         E    + ++
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPKTEVETLHGLDAS 360


>gi|169824322|ref|YP_001691933.1| hypothetical protein FMG_0625 [Finegoldia magna ATCC 29328]
 gi|303234057|ref|ZP_07320706.1| putative membrane protein [Finegoldia magna BVS033A4]
 gi|167831127|dbj|BAG08043.1| conserved hypothetical protein [Finegoldia magna ATCC 29328]
 gi|302494982|gb|EFL54739.1| putative membrane protein [Finegoldia magna BVS033A4]
          Length = 395

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 112/325 (34%), Gaps = 4/325 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +      +L  +I+ +   P+   F +K     +F  +I  V V+ L I+  + +    
Sbjct: 70  VIYHTINTLLIGIILSYIINPLVKYFENK-GIRRSFAILIIYVIVIFLIILLGMIVVPQT 128

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++K+++  +             ++D    ++        +       +  +       
Sbjct: 129 IQQIKKMIISLPGFMADISI---KVNDFNRKIFKEYPNVSKIMSNAMQTVNQKLGTIQTS 185

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I  +               L II + +  F+   D       +     +     +  +  
Sbjct: 186 ILDMLSQTGNITGSIFTNLLRIILIPVVSFYMLLDKEKCIDFIMGFIPNKNKDKFLSVCN 245

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K       G  I+AI  G++   A  +  V   + +G++T +  +IP   P      
Sbjct: 246 DMDKAYSEFIRGRLIMAIFVGVLTAIALIIMRVDFAIIIGILTMVGDIIPYIGPFIAVTP 305

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  L    +   A  + +      ++ +  L P L+G  I +  L     L+ G    G+
Sbjct: 306 AFILAFLDSPIKAVVVVIVFVSIQWVENNILAPKLLGSKIGINPLLVIVSLIIGGGMFGV 365

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
           +G+ +    +A I +++      IK
Sbjct: 366 VGMILSVPFVATIKILYLHFKDKIK 390


>gi|182417082|ref|ZP_02948460.1| putative protein of unknown function [Clostridium butyricum 5521]
 gi|237668993|ref|ZP_04528977.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182379091|gb|EDT76595.1| putative protein of unknown function [Clostridium butyricum 5521]
 gi|237657341|gb|EEP54897.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 390

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 116/353 (32%), Gaps = 17/353 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-----------SKKEESSTFLAV 64
           I+  +L  ++ +     P+L A++I +  +PI                 K         +
Sbjct: 36  ILGNVLSVIFSIISLLKPLLLAIVIAYILYPITKLIENFLENNKILKIQKFGTRRITAVI 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ VSV+ +    +  +++    ++    +   + +   +                E + 
Sbjct: 96  LSYVSVLAILTALIWGIYFMIGGQLSSNTTIANIISDINLYFDNNPFSASSIKETIESFN 155

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +       I+    L    +       +   +       +     I   +  +D    
Sbjct: 156 SPIISALQPYIVDGFNLIQTYVMKNLSNMTSSLVSIGSSIATFFIAFIISIYLLKDSEYF 215

Query: 185 SQQLDSLGEHLFP-----AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                 L   +F           I  I+ +V      G  + A   G++   A  +AG+ 
Sbjct: 216 ISIWKKLYYLIFRGGSAGNKLNYIFSIIHEVFGKFIRGQLLEAFFVGVLSSIALSIAGIK 275

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               +G I  I  MIP   PI  T ++  + L+ GN        +   I   I ++ L P
Sbjct: 276 YSFVIGTIAGISNMIPYVGPIVGTVLAAVMGLLSGNPIKILYAIIAMLIVQQIDNQLLAP 335

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +VG  + L  + T   ++ G    GLLG+ I   L A   V++        E
Sbjct: 336 QIVGNSVGLHPVFTMMAILIGGNVGGLLGMLIAVPLAASFKVLFTTWYHKHIE 388


>gi|16079968|ref|NP_390794.1| permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|221310857|ref|ZP_03592704.1| hypothetical protein Bsubs1_15911 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315183|ref|ZP_03596988.1| hypothetical protein BsubsN3_15812 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320100|ref|ZP_03601394.1| hypothetical protein BsubsJ_15723 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324382|ref|ZP_03605676.1| hypothetical protein BsubsS_15882 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312450|ref|YP_004204737.1| putative permease [Bacillus subtilis BSn5]
 gi|8928522|sp|O34991|YTVI_BACSU RecName: Full=UPF0118 membrane protein ytvI
 gi|2293327|gb|AAC00405.1| YtvI [Bacillus subtilis]
 gi|2635381|emb|CAB14876.1| putative permease [Bacillus subtilis subsp. subtilis str. 168]
 gi|291485351|dbj|BAI86426.1| hypothetical protein BSNT_04258 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320018724|gb|ADV93710.1| putative permease [Bacillus subtilis BSn5]
          Length = 371

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 102/344 (29%), Gaps = 10/344 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    +    + + Y+      P L ALI+     P+            T   +    
Sbjct: 11  RTLFVISMTAGSIAAAYYSFPLTYPFLIALILSSVIHPVVDYLDKVTGFPRTINVLGVLA 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      L  L    +     L   +       I     L         +EL      
Sbjct: 71  FFLLAAFGVLTILVAEIVTGTAYLAKTLPPHISTFISYCEKLFTTHIQPLYNELTLLFQE 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              + +    T ++T G          +  I     RF  +  +    +IF ++A FF  
Sbjct: 131 LETNQQASIVTHIQTLGDSAAKNAGLLLSHILEMIPRFFALLPNTAAVLIFSLLATFFMT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   +   L  +      A  K IS  + K +        ++     +++     L  V
Sbjct: 191 KDWHKLKAMLVLILPDRVTANSKAISSELKKAMTGFIKAQAVLVFITMVIVFIGLSLLKV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                +  +  ++ ++P     S     I  L                + + I  +   P
Sbjct: 251 EHAATIAFLIGLVDLLPYLGAGSVFVPWILYLSITGQLPQAIGIGILYLVVLIQRQLTEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++   I +  L T   L  G +  G LGL  GP ++ +I    
Sbjct: 311 KILSKSIGIDPLATLIALFAGFKLFGFLGLIAGPAVLVIIQAFI 354


>gi|220918636|ref|YP_002493940.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219956490|gb|ACL66874.1| protein of unknown function UPF0118 [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 412

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/379 (10%), Positives = 115/379 (30%), Gaps = 24/379 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
                    +  ++  ++L  +        P   A +  +   P+ +    ++       
Sbjct: 9   RRPRTRLYALTALLWVMMLGVVALAWPVLLPFTLAGLAAYVIDPVIAGIARQRVAGRPVP 68

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP------------- 105
                ++    +  L  +  + +      E    + ++        P             
Sbjct: 69  RVAAVLVVYAVLGTLVWIAAVSILPAVYREAIRALLELRDFLASITPERVQEWTRAIDAF 128

Query: 106 ------VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                          G       ++  L+   +  +   T      +  +  F+      
Sbjct: 129 LQRYGIPLDVTPSTGGLDTPGGRFSVDLAAGMASALHDLTLALRGRVSDVVAFSRAILAG 188

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +     ++ + +   F   D   I +  +++    + A  +++   +   +     G  
Sbjct: 189 TIQTLFFVVLLFMLTAFISMDAPRILRWFETVVPSHWRADLRRLRAGIDAGLSGVVRGQL 248

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNA 278
            I +  G++      +  VP   ALG +  ++ ++P    I     + +  L  G    A
Sbjct: 249 TIMVVNGILTLIGLLVLKVPFAFALGFLAFVLYIVPIFGTILSSVPIVLLALTGGGPTKA 308

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                W  +   +    L P ++G   ++  +     LV G R+ G++G  +   + +++
Sbjct: 309 LLALGWITVVHALEAYVLNPKIMGDAARIHPVLIVLALVVGERSFGIVGALLAVPVASVV 368

Query: 339 AVIWKESIMAIKENKEKIS 357
             +++       E  E+ +
Sbjct: 369 VAVFRFLHRKQVELDERAA 387


>gi|255650553|ref|ZP_05397455.1| hypothetical protein CdifQCD_10251 [Clostridium difficile
           QCD-37x79]
          Length = 346

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 102/323 (31%), Gaps = 4/323 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 27  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 86

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +              +   +    H+ H     +   +          
Sbjct: 87  NRLINEMPMYTDYIDSFIEK---NMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNF 143

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 144 LIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHD 203

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    +     + + + L  I  +  +IP   P       I 
Sbjct: 204 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 263

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 264 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 323

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
           F+   + A++     + I    +
Sbjct: 324 FLSVPIAAVVKTYVDKYIDNRLQ 346


>gi|116671651|ref|YP_832584.1| hypothetical protein Arth_3105 [Arthrobacter sp. FB24]
 gi|116611760|gb|ABK04484.1| protein of unknown function UPF0118 [Arthrobacter sp. FB24]
          Length = 389

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 120/347 (34%), Gaps = 16/347 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++   ++ + + +L  ++    PVL ALI+     P  +    ++         +A V
Sbjct: 30  QILLILTVVVVSVFALLQIRLLVIPVLIALILAAAIAPFVNLL-KRRGLPGAAATAVAFV 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ +       +      +  ELVS+                          L      
Sbjct: 89  ALLAVLSGVTTVIVASIRSQWGELVSQASSGLDELQSFL--------------LNGPIPV 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + ++      +       +   A     +  ++      M++ LFFF +DG  I    
Sbjct: 135 DGEQIEQARAAIVDFAASSQVRSGAITGLSVITEFLAGASLMVVILFFFLKDGTGIWNFF 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    A  ++      +V+     G  I+A+ + L +G+A  +  VP  + L +I 
Sbjct: 195 LRPYTGAREAKLRRSGARTIQVLGDYVRGTAIVALVDTLAIGTALLILNVPLAIPLAIIV 254

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I A +P     ++    ++  L+      A  + +       +    L+P ++G  ++L
Sbjct: 255 FIGAFVPIVGATVAGILAALVALVANGPVVALVVVIVVIAVNQLEGNLLQPVVMGKSLQL 314

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             L     L  G    G++G  +   L A++  I +      K+   
Sbjct: 315 HALVILLALTAGTILAGIIGAVLSVPLAAVVWAIIQVWTTDEKDQAP 361


>gi|86130472|ref|ZP_01049072.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85819147|gb|EAQ40306.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 365

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/351 (13%), Positives = 120/351 (34%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + I+L  LY ++     +  A ++     P+        + S T+ A++   
Sbjct: 15  RAVGVVVGILILLWLLYTIQSVLVYLAVAAVLSLVGRPVVKFLRYTLKFSPTWAAIVTIF 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + +   +      + + + L           I       +I         +     
Sbjct: 75  ILLLVILGVFMLFIPVVIDQSQHLGQ---------IDFEEVKVNINRLFGEIATYFGLDK 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +     +K      IP F +          +    +I   FFF +D   +   L
Sbjct: 126 MTIIQGVQEAELVKNFDFSIIPAFLNGIIGNLGAAGIGTFAIIFITFFFLKDNRLLVNSL 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +  +      + ++   +  ++   F+G+ I      ++        G+ + +A+ +  
Sbjct: 186 LAFAKKGNEGKFLRVFEKIKYLLSRYFIGLIIQVFTMFVLYAIILLSFGIDNALAIALFC 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFN---------ATCLFLWGAIELFIVDKTLRPF 299
           A++ ++P   P+   AV + L+   NI              + L       + +  ++PF
Sbjct: 246 AVLNLVPYLGPLVGGAVMLLLVTSSNIEMDFRTIILPKLLWISLCYGAAQMVDNFVIQPF 305

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  ++      G+ G+ +   +   + VI KE +   K
Sbjct: 306 VFGNSVKSHPLEIFLAIIIAGLLFGVFGMILAVPVYTALKVISKEFLSEYK 356


>gi|306833392|ref|ZP_07466519.1| probable permease [Streptococcus bovis ATCC 700338]
 gi|304424162|gb|EFM27301.1| probable permease [Streptococcus bovis ATCC 700338]
          Length = 372

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 106/331 (32%), Gaps = 12/331 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFISK----------KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           P L    I +    + S +              +       ++A ++ + L       + 
Sbjct: 41  PFLIGAGIAYIVNIVMSLYEMLYTRVIKNRILLKAKRAISMILAYLTFILLISWLFSIVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+        + I            +      +   S            + 
Sbjct: 101 PDLISSINSLLKIDTTGVANFIKEVSDNKATKELLDYFGNSSDITSTFSEYSQQILNQVL 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +     +    S      L   +S++F I  L    + G   +  +D+     +      
Sbjct: 161 SVLTGLLTS-VSTIASTVLTVFVSLVFSIYVLASKEQLGRQFNLLIDTYLGT-YAEKVHY 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +  I+       F+G T+ A+  G +  +  +L   P    +G++ A  A+IP       
Sbjct: 219 VLDILHLRFHGFFVGQTLEAMILGSLTAAGMFLFSFPYAATIGILVAFTALIPVIGAYIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L+   ++  A    ++  +        + P +VGG I LP +     +  G   
Sbjct: 279 ATIGFILIATQSVSQAFLFLVYLVVLQQFEGNIIYPRVVGGSIGLPGMWVLMAITIGGAL 338

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+LG+ +   L A +  I K+++   ++  
Sbjct: 339 WGILGMLVAVPLAASLYQIIKDNVAKRQQAN 369


>gi|283798475|ref|ZP_06347628.1| putative sporulation integral membrane protein YtvI [Clostridium
           sp. M62/1]
 gi|291073733|gb|EFE11097.1| putative sporulation integral membrane protein YtvI [Clostridium
           sp. M62/1]
          Length = 356

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 105/351 (29%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS---- 59
           +    + ++   +   + VS  +    F P  +A +      P  +    + +       
Sbjct: 5   SRKQRKALVVIAVTAGVYVSFKYFLPLFLPFAAAYLTALILRPTAAWLERRLQFRLFGRR 64

Query: 60  -----TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                  +  I  V +  L    L +       E  ++ +++             +    
Sbjct: 65  FSVPIGMIGGIELVILTALLGAALFYGGRRLFEEANQIANQIPAWIDSFDHWLTSMCRQV 124

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                        +  + L   +    K      +    + F           +F I ++
Sbjct: 125 EAFCRLRDGVLVQAAREMLLQAASALKKMTMSTLVVNSVAAFTFCVEVMVAVAVFFIASV 184

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                      ++  S+    F  + +++         +      II      +      
Sbjct: 185 LSLQEMDELRRRRRQSMFSREFALFSRRLVM----TGNTWLRTQLIIMFITSCLCILGLV 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +   P  + LG+   I+  +P     +       +L+    +    +     +   +V +
Sbjct: 241 MIRNPYCILLGLGIGILDALPLFGTGAVLVPWSLILLVQKQWYEGIVLAGLFLVCCLVRE 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L   L+G  + L  L T   +  G++  G+LG+ +GP+ + +I  + +E 
Sbjct: 301 FLEARLMGDGMGLSPLETLAAIYVGLKLFGILGVLLGPIGLLIIEDLVEEY 351


>gi|317406579|gb|EFV86769.1| hypothetical protein HMPREF0005_05760 [Achromobacter xylosoxidans
           C54]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/346 (18%), Positives = 139/346 (40%), Gaps = 7/346 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    ++  ++  +++ SLY LK F   ++ A  I   +WP+  +   +         V 
Sbjct: 11  LARNLLVVVILSALMIGSLYVLKPFLFGLIWATTIVVATWPVMLAVQRRCGGRRWLATVA 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG--GMWASELW 123
             + ++ + ++PL        L    +++ +     + +  P          G   +  W
Sbjct: 71  MLIVLLVVIVLPLYQAISTLALHGGAIMTAIKGLPDYALMAPPGWVRGIPLGGERIAHEW 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      +       T    ++   A+  G+  +   ++I+   I     Y  G  
Sbjct: 131 QALADAGAGGLLARLEPYITMAAKWLLSNAAIVGVFVMHMLITIVIAGI----LYSQGDV 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +  +      L         R+    IR+  LG+ + A+ +  + G   W+AGVP+   
Sbjct: 187 AANFMQRFANRLAGHRGVAAIRLAGLSIRAVALGIVVTAVVQSALGGLGLWIAGVPAAGI 246

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +  +  ++ +   G  +      I+L  + ++  A  L L  A+ + ++D  LRP L+  
Sbjct: 247 ITALMLMLCLAQLGPFLPLLGGVIWLF-QNDMKVAAVLLLVWAVLVTMLDNLLRPLLIKR 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            + L  L    G++GG+   G++GLFIGPV++A+ + + K  +  +
Sbjct: 306 GVNLSMLLILAGVLGGMFAFGIVGLFIGPVILAVTSTLLKAWVDEV 351


>gi|218550737|ref|YP_002384528.1| hypothetical protein EFER_3448 [Escherichia fergusonii ATCC 35469]
 gi|218358278|emb|CAQ90925.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia fergusonii ATCC 35469]
 gi|324111795|gb|EGC05775.1| hypothetical protein ERIG_03542 [Escherichia fergusonii B253]
 gi|325499023|gb|EGC96882.1| hypothetical protein ECD227_3120 [Escherichia fergusonii ECD227]
          Length = 349

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHISPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     I   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLIVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|239917041|ref|YP_002956599.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|281414496|ref|ZP_06246238.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|239838248|gb|ACS30045.1| predicted permease [Micrococcus luteus NCTC 2665]
          Length = 405

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 82/263 (31%), Gaps = 1/263 (0%)

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
               Q    +   L        A              ++        +        A  F
Sbjct: 101 QQIVQGFAELGDQLGQAVDDAIAWLAGVGVEIPRSGAELEGLWQTLRDNSATFMNSAVSF 160

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   ++    +   + +L FF  DG  I + L         A   +  R   + + S   
Sbjct: 161 GSTAVNIGAGLFIALFSLIFFLYDGDRIWRFLLIFVPKAHRATVGRAGRSGWQSLGSYVR 220

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNI 275
               +A  + + +G    + GVP  + L V+  + + IP     ++     +  L+   +
Sbjct: 221 VQIFVAFIDAVGIGLGALILGVPLAIPLAVLVFLASFIPMIGATLTGGMAVLLALMSNGL 280

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            NA  +     +   I    L+P ++G  + L  L  F  +  G   +GL G      ++
Sbjct: 281 VNALLMLGVVLLVQQIESNVLQPLVMGKAVALHPLAVFLAVAAGSTVLGLAGAVFAVPVL 340

Query: 336 ALIAVIWKESIMAIKENKEKISS 358
           A +    +       E   + + 
Sbjct: 341 AFVNSFVRALTADTPEELTERTD 363


>gi|154498034|ref|ZP_02036412.1| hypothetical protein BACCAP_02015 [Bacteroides capillosus ATCC
           29799]
 gi|150273024|gb|EDN00181.1| hypothetical protein BACCAP_02015 [Bacteroides capillosus ATCC
           29799]
          Length = 395

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/367 (11%), Positives = 114/367 (31%), Gaps = 20/367 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLK-------------GFFAPVLSALIIGFTSWPIYSS 50
             L+ + +   +++ I ++    L              G  +P ++   I +        
Sbjct: 11  YFLDSRAVSNLLVVLIGILFYMALANIGALQSKVDSLLGVLSPFIAGFAIAYLLNTPMDF 70

Query: 51  FISK----KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           F  +     +       +   +  + + ++ L  +    +  +  L S +     +   +
Sbjct: 71  FERRVFYNFKRKRGLSVLTVYLLALVVVVILLNLILPQVIESILALGSNMSTYLSN---L 127

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
             ++ D+             L       +       +  +  +       G + +    +
Sbjct: 128 NLFVQDLIDQYHLEGEGLTDLVTLYQDLLKRAATWASQKVPELLSLGVAVGNVLISAITA 187

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           +I  +  L    R    + + + +         +  I R    V      G  I +   G
Sbjct: 188 LISSVYMLAGKGRLVPQLKKIIYAAAPTAKVDRFLSICRHANGVFVGFINGKIIDSAIIG 247

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           ++      +  +P  + + V+  +  +IP   PI      I +LI  + + A    +   
Sbjct: 248 VLCFVLNLIFQIPFAMLVAVVVGVTNVIPFFGPIIGAVPCIMILIIVDPWAALRFGVLVI 307

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
                    L P ++G    L  +     ++ G    G LG+ +G    A+I  + ++  
Sbjct: 308 ALQQFDGNILGPKILGDSTGLDAIWVLVAIIVGGGLFGFLGMLLGVPTFAVIYALVRDWT 367

Query: 347 MAIKENK 353
            +  + K
Sbjct: 368 NSRLKAK 374


>gi|39995960|ref|NP_951911.1| membrane protein [Geobacter sulfurreducens PCA]
 gi|39982725|gb|AAR34184.1| membrane protein [Geobacter sulfurreducens PCA]
 gi|298504973|gb|ADI83696.1| membrane protein [Geobacter sulfurreducens KN400]
          Length = 363

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 77/324 (23%), Positives = 138/324 (42%), Gaps = 3/324 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +    +  ++ +    +  F AP+  A +IG  ++P+Y    +         A I T +V
Sbjct: 10  LGFLAVALMLYLVYAIVAPFLAPLGWAAVIGVLTFPLYRKLRAGVGGRELLAAGIMTPAV 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSH 129
           +   +VP++ L ++ + E       +      G   V   +               +   
Sbjct: 70  VITLVVPVVGLTFFIIQEATLAYQFLERVAADGGEAVLAKIRAHHLIHPWITRIEAYTGP 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +           I  ++         + L II M+IALFF Y DG  + +++ 
Sbjct: 130 LSLEIDTTFLPEVKEVAAKILGYSKEAVKNAFLFILKIILMVIALFFIYLDGERVQRRVL 189

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++   L   +  ++S  V +V+ +   G+ +  + +G + G    +AG+PS V  G I A
Sbjct: 190 AIIP-LTEQHKIELSDTVRRVLTAVMFGVFLTCLVQGALGGIGLLVAGIPSPVLFGAIMA 248

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A+IP     + +   +IYLL+ G I     L +WG   +  +D  +RPF + G  KLP
Sbjct: 249 VCALIPVVGTALIWLPAAIYLLLNGQIVQGVGLMIWGFAVVSSIDNVIRPFFISGKAKLP 308

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGP 332
            L    G +GG+ + GLLG  IGP
Sbjct: 309 VLVIAIGGLGGLASFGLLGAVIGP 332


>gi|300113733|ref|YP_003760308.1| hypothetical protein Nwat_1046 [Nitrosococcus watsonii C-113]
 gi|299539670|gb|ADJ27987.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 380

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/348 (14%), Positives = 110/348 (31%), Gaps = 10/348 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   +   +L   Y L+  F P+L A    +   P+        +        +    V
Sbjct: 26  VLWISLGIFLLWFGYQLRAIFIPLLIAFAFAYLFDPLIRWGERYCKMPRPATISLLLALV 85

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   +  + +L    + +  EL+  +V   Q                           +P
Sbjct: 86  IMSSVSLVAWLGPEFLKQFAELLRGLVDYLQTLAIEYDIHLIKSLRAKLENWVQHLEENP 145

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + +   L       +    S            I+ +    F       +I  +L  
Sbjct: 146 VGFIVENTETLLIGTTQAV-TVVSHILGAAAYVGTMILLIPFYFFIIAWRFGAIMGKLKE 204

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--GVPSHVALGVIT 248
                       I++ + + + + F G  +IA+    +    +      VP  + LGV  
Sbjct: 205 FMPAKEKDRILIIAKEMDEAVAAFFRGRLVIALVTAGLFSLGWSPLIADVPYWLVLGVSA 264

Query: 249 AIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLW----GAIELFIVDKTLRPFLV 301
            I+  IP  + +++ A        +     F+   + +W      I  F+    L P++ 
Sbjct: 265 GILNFIPYLSTLAWLAAIFSKGLAIGFSGGFDLWLVIIWPSLAYGIVQFLDGWLLTPWIQ 324

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G  + L  +     ++ G    GL GL +   + A   +++ E I+  
Sbjct: 325 GRSLNLGAITVVVVVLIGGTVGGLYGLLLCIPMAACAKILFTELILPR 372


>gi|291515855|emb|CBK65065.1| FAD synthase [Alistipes shahii WAL 8301]
          Length = 490

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/356 (13%), Positives = 119/356 (33%), Gaps = 12/356 (3%)

Query: 7   NPQGIMRWMIMFII----LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            PQ  +R++    +    L  +++       +L + ++     P+         +     
Sbjct: 4   TPQTFLRFIAGAAVAAAVLFLVWYFSSIVVYILVSAVLAVMGNPLVKFLSGLHFKGWQVP 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A ++ + +  V L  L    +  +   +++    +   +                 L
Sbjct: 64  RWLAALATLVVIWVVLATLCSLFVPLVFNKINQFAHVDFAAVVGSIGEPIARMQHDLQAL 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           ++   S       L+    +   I+ +    S    + L   ++I  +    FFF ++  
Sbjct: 124 FSLPESTFSLSDELTAALRQIIDINSLNTIFSSVINLVLSSVIAIFSVSFITFFFLKEEG 183

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP--S 240
                + S+    +     +    V  ++   F G+   ++   + +       G+    
Sbjct: 184 LFYAMVTSVFPEHYHGNITRALDSVTVLLARYFTGILSESLLLTIAVTLVMMAFGMKAAD 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI------FNATCLFLWGAIELFIVDK 294
              +G+I  +M ++P   P+    VS+++ I   I        A  +     I   + D 
Sbjct: 244 AGFIGLIMGVMNVVPYAGPLIGGVVSVFVGIVSPIEGMSVGHTAFVIAGSLLILKGMDDF 303

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+P L    +K   L  F  ++      G+LG+ +      ++ V  KE     +
Sbjct: 304 ILQPTLYSERVKAHPLEIFLVILIAGSLAGILGMLLAIPSYTVLRVFAKEFFSQFR 359


>gi|237739667|ref|ZP_04570148.1| permease [Fusobacterium sp. 2_1_31]
 gi|229423275|gb|EEO38322.1| permease [Fusobacterium sp. 2_1_31]
          Length = 358

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 119/327 (36%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
           G+F  ++ A+ I     PI      K + +      ++ V V+ + I+  L +    +  
Sbjct: 32  GYFMTLIMAIFIAILLEPIEKYLKKKSKINDVLAISLSIVFVVLIVIIMSLIVIPEIISS 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +K L       ++  + + + +++         + T+ L+   +  I + T      +  
Sbjct: 92  LKVLNDMYPAISEKVLTIGKDVTNYLAEKNIYTVNTEELNDSITNFISNNTSNIKEFVFA 151

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                  + + F +  ++     + L        ++   +  +       Y     ++  
Sbjct: 152 FVGGLVNWTLGFTNLIIAFTLAFLILLDKKNLMKTLENLIKIIFGVKNTPYVMNKLKLSK 211

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +  S   G  I++   GL +     + G P      ++  +  MIP    I    V+ +
Sbjct: 212 DIFISYISGKIIVSSIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIFGGIVAFF 271

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L++         L +   I   +    + P ++G  + L        ++      G++G+
Sbjct: 272 LILLVAPIKTLILLIAIIISQLVDGFIVGPKIIGNKVGLSTFWVMVSMIIFGNLFGIVGM 331

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
           F+G  ++++I + + + +   ++  ++
Sbjct: 332 FLGTPILSIIKLFYVDLLKRAEQGGKE 358


>gi|184200636|ref|YP_001854843.1| hypothetical protein KRH_09900 [Kocuria rhizophila DC2201]
 gi|183580866|dbj|BAG29337.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 393

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 98/338 (28%), Gaps = 7/338 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
              +    L  + G    +++A  I     P+     SK        A    +++     
Sbjct: 63  FALLGYYVLTNVGGLVGWIVTAAFISLGLDPLVRWLESK-GMPRALAAAAVILALALALT 121

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +    + + ++  ++V            ++                     +  +
Sbjct: 122 TFILVVVPRMVEQAQQFAARVPEFVDS------FMHSDLYHALNDRFDIAASVQKGASGL 175

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N +  +       G + L+     + ++    +F     +I      L    
Sbjct: 176 QERLASDENFLGGMFGSVVNVGGVVLNGVTGTLIVMALTLYFLFSWPTIKAWCYRLAPAS 235

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A    +   +   + +  +G   +A+    V      + GVP    L +  A++A IP
Sbjct: 236 KRARVTHLGDRMINGVGNYVMGQACVALLNATVAFILMSITGVPYASLLVLFVALLAFIP 295

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +        +   G         L     L +    + P ++   + +P       
Sbjct: 296 LVGGVIAGVFVSLVATLGGWNTVVPYALGYFAYLQVEAYVISPRIMSRAVAVPGAVAIVA 355

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +  G    G+LG  I     A   ++ +E  +  ++ +
Sbjct: 356 VAAGGALWGVLGALIAIPTAAAGLLLVREVFVPRQDAR 393


>gi|23099624|ref|NP_693090.1| hypothetical protein OB2169 [Oceanobacillus iheyensis HTE831]
 gi|22777854|dbj|BAC14125.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 368

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 114/345 (33%), Gaps = 10/345 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+   +   ++V++YF   F  P+L A I+     P+     +K         +I   
Sbjct: 11  RAILVIGLTITVIVAIYFSFPFIYPILIAYILASLFQPMVRGIENKLNFPKIPAIIITVT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + LF   L             L  K+    QH +     + +        ++ +   S
Sbjct: 71  CFLTLFTGALFLAITELYQGTIFLADKIPTHYQHFVLYLENMFNTHILPMYEKVLSYIDS 130

Query: 129 HPQSLKILSETFLKT----------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             Q  +   + ++ T          + +         F         +I+F++IA     
Sbjct: 131 LDQGYQETVKNYIATLSDLIASGGASFLQVTISNIPMFIAAIPSSVTNIVFILIAACMIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +   I      +      +   KI+      +   F    I+      ++     +  V
Sbjct: 191 YEMDRIHSFFKEIFPARIQSIQNKIASHFKLAVVGYFRAQLILVFTTACIILIGLLILQV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +  AI  +IP           I        ++ T         + I+ + L P
Sbjct: 251 EHPLTIVLFAAIADIIPYVGTGIIFIPWIIFSFITGNYSLTIGLSLLYGFVVILRQILEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++   I +  L    G+  G++ +G +G+F+ P+L+ L   + +
Sbjct: 311 KVLSSSIGIHPLVMLIGMFIGLKVLGFIGIFLSPILLVLFKGLIE 355


>gi|261409447|ref|YP_003245688.1| hypothetical protein GYMC10_5674 [Paenibacillus sp. Y412MC10]
 gi|261285910|gb|ACX67881.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 359

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 97/305 (31%), Gaps = 9/305 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI    L F      P++ +    +   P+      + + + +   ++  V    + 
Sbjct: 26  LVDFIFRPVLSFFSIILVPLMLSGFFYYLLRPLVDLLEKR-KLNRSLAILLLYVVFAGIL 84

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +L ++     ++  LV              + L +              L+      
Sbjct: 85  TGFILGVWPSLRDQIVALVQNAPALFAKLGEQLQELENNGFFQDIFPENANPLTQLTD-- 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                     G  F+  +         ++ + +    I L++  ++G    + + S    
Sbjct: 143 ------YLNQGFTFLTNYIMNLFSFVSNFAIVLFTFPILLYYMLKEGGKFGKMVVSFLPD 196

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      +   +   ++   +G  ++ +  G+++   + + G+P  + L V+  I   I
Sbjct: 197 RFKGEGASVLDEINNALKGFIVGRVLVNLALGVLMYIGFLIIGLPYALLLTVVAVIANFI 256

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I      + +    +   A    +       I D  + P++ G  + +  +    
Sbjct: 257 PFIGAILSAIPIVIIGFIQSPGTAIWSLVVILAAQQIQDNLIGPYIFGKQLAIHPITIII 316

Query: 315 GLVGG 319
            ++ G
Sbjct: 317 LVLVG 321


>gi|326791068|ref|YP_004308889.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
 gi|326541832|gb|ADZ83691.1| sporulation integral membrane protein YtvI [Clostridium lentocellum
           DSM 5427]
          Length = 357

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 114/331 (34%), Gaps = 3/331 (0%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++I+ ++ + L +   F AP +SA +I F      +    +   + T +A+   +    +
Sbjct: 17  FIIIGMVFIVLKYGLPFIAPFVSAFVIAFLLNKPITFLAKRCHVNRTLIAIAIVLVFYSI 76

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +    L     + +KEL S +       I             + S++    L      
Sbjct: 77  IGILFALLGIRLFVFVKELFSYLPNLYATEIQPFLMQLFDSLEHYISKMDVSLLPAMNEF 136

Query: 134 KILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  L      F   +    S +      + + I+F II+ FF   D   I+  L  
Sbjct: 137 SSNVVQSLGELISSFSMKMIGAISNYASSLPGFFIRILFTIISTFFLVIDYKKITAFLLH 196

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +        +I   V   +    L   +I       L     +  + + V +  + +I
Sbjct: 197 QLKDKHQKLMIEIKDYVVNTLFKCILSYALIMCITFAELSVGLSIIRIENAVLIAFVISI 256

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P             +      ++     L   I + I+   L P +VG  + L  L
Sbjct: 257 FDILPVLGTGGIMIPWTIIAALQGNYSLALGLLIVYIIITIIRNILEPKIVGSQVGLHPL 316

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            T   L  G +  G+LGLF  P+ ++L+  +
Sbjct: 317 VTLMSLFVGAQLFGVLGLFGLPITLSLLKNL 347


>gi|148254854|ref|YP_001239439.1| hypothetical protein BBta_3439 [Bradyrhizobium sp. BTAi1]
 gi|146407027|gb|ABQ35533.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 370

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 114/341 (33%), Gaps = 17/341 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++   ++  ++++++ L         A ++      +             +  ++  
Sbjct: 34  TRRLLIVCLVGAMMLAVWKLADLVVLAFGAALLALLLRGVVHEVSRNTRLPEPWAVLLTI 93

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++++ L +            +   L   +    Q    V +   + P G+W         
Sbjct: 94  LALLGLVVSVTWLFGSQIANQFNILAKDLP---QSLTQVVQEFVETPWGVWV-------- 142

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    ++     +    + R+ + F          +  ++ A  +F          
Sbjct: 143 ------VGRAQDVNIGSATGPLARYIAAFFGSVFHTSAYVAVLLFASGYFAVQPARYVDG 196

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +         +++  ++   +R   +G +I     G +      L GV + +ALG+I
Sbjct: 197 LLRMVPADRRPRAEEVIELLGSTLRRWLIGQSITMAVVGTLTAIGLLLLGVAAPIALGLI 256

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +AI A +P   P+  + + I +        A  +    A   F+    + P +    ++L
Sbjct: 257 SAIFAFVPYVGPVLASLLGILMAAMQGPTIALYVIALYAAIHFVEGNLVTPLVQAEAVEL 316

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P + T F  +     +G +G+ +   L  ++ +      + 
Sbjct: 317 PPVLTLFATLIFGLLLGPIGVLLAAPLAVVVLLAVNTLYIE 357


>gi|169829827|ref|YP_001699985.1| hypothetical protein Bsph_4404 [Lysinibacillus sphaericus C3-41]
 gi|168994315|gb|ACA41855.1| UPF0118 membrane protein in ctaF 3'region [Lysinibacillus
           sphaericus C3-41]
          Length = 352

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 111/338 (32%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                + I R +++  ++++ YF+     P++ A I  F   PI   F  + + S     
Sbjct: 3   KFNARKLIFRLLVILSLIIAAYFIIPVSMPLILAAISAFFLEPIVMFFKRRWKMSRKIAV 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               +  + +  +         M ++  L  +          +   + +           
Sbjct: 63  AFIYIVSVIIISIICYISITQIMTQIILLSKQAPYYISKLSDMWLHMQENISKYTEDFPP 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               S  ++     +   +T    F     S F        +S++  +IALF F  D   
Sbjct: 123 EVSTSLQKTTMDFIKKIEETFLSFFNYSKVSAFFSEIPRLFISLLVYMIALFLFMLDLPK 182

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +      +       K I   +             ++   G V      L      + 
Sbjct: 183 LKRITYKYLKPNTAKKIKIILNRLKDATLGYMKAHLFVSFIIGGVTLVGLLLIQPKYAIT 242

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + +I  ++ ++P    I   A   +  +              A  L I+ + + P L+G 
Sbjct: 243 MTIIIWLIDIVPFLGSIIILAPWGFYHLLMGNTAIAVKLFILAAILLIIRRVVEPKLMGD 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            I L  LPT   +  G++  G++GL IGP ++     +
Sbjct: 303 HIGLSTLPTLIAMFIGLQLFGIIGLLIGPFVIIFFIAL 340


>gi|291296851|ref|YP_003508249.1| hypothetical protein Mrub_2478 [Meiothermus ruber DSM 1279]
 gi|290471810|gb|ADD29229.1| protein of unknown function UPF0118 [Meiothermus ruber DSM 1279]
          Length = 369

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 113/334 (33%), Gaps = 8/334 (2%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +G    +  A I  + + PI  +   ++     F+ V+     + LF+    FL    +
Sbjct: 37  ARGALITLALAFIFAYLTSPIVRALEKRQVPR--FVGVLLVYLGLGLFLGLASFLIAEMV 94

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +   V+++       +     L    G +          +                 +
Sbjct: 95  NVLARYVTELPRILTPLLTWIENLPSRIGQVELPPALEGAFAQAAQGLQTLLEGFTQTLL 154

Query: 147 DFI------PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             +            F    +   L +   +I   +   D   IS+ L       +  + 
Sbjct: 155 QGLRALLAQGGSLVGFFASLVGGVLQLFAALIISIYLLYDLPQISKTLFQAVPLPYQPFV 214

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I+  + + +     G  ++AI  GL++   +W+ GVP   +LG + A+  ++P    I
Sbjct: 215 ADIAAKLDRAVGGYIRGQLLVAISVGLIVTVGFWICGVPLAGSLGFLAAVFNLVPFVGVI 274

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T  ++ L +         +     +   +    L P ++G    L  +     ++ G 
Sbjct: 275 VSTVPAMLLALTVGWPQVLAVLGVVVVANQVEAHVLSPRILGQATSLHPVSVIAAILVGS 334

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              GL+G  +   L+A   V++ E  +  +  +E
Sbjct: 335 SLYGLVGALLAVPLLAFFKVLYTELYLNSRFYRE 368


>gi|226303651|ref|YP_002763609.1| hypothetical protein RER_01620 [Rhodococcus erythropolis PR4]
 gi|226182766|dbj|BAH30870.1| hypothetical membrane protein [Rhodococcus erythropolis PR4]
          Length = 382

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 109/334 (32%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++      + +  +    G   PV  AL++     PI      +          +  + 
Sbjct: 33  VLLGLAATVVAVGGMKVFGGILGPVFLALVLTIAVQPIQDWSQRRGWPK-----WVGMLG 87

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +    + LL L    ++   +L + +   ++    +                    L+ 
Sbjct: 88  SLVTVYLILLGLAASLIVSTAQLATILPQYSEEMTNLLN-------------EGRDKLAD 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   ++ L +  +  +           L     ++F++  L F   DG SI  +L+
Sbjct: 135 FGVSTEQIQSTLSSIDLTKVVGVLESGLEGLLGILSDLVFILALLLFMAFDGMSIRSRLN 194

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                    R   +  T+  +   ++ G A WL G+   V   +++ 
Sbjct: 195 VL--SEQRPEISYALSTFAAGTRKYLVVSTVFGLIVAVLDGGALWLMGIQLPVLWALLSF 252

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    +        L L++G  +    + +  ++  F++   ++P  VG  + L 
Sbjct: 253 ITNYIPNIGFVIGVIPPALLGLLQGGPWLMLWVIVVYSVINFVIQSIIQPKFVGDAVGLS 312

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   L  L+  + 
Sbjct: 313 VTMTFLSLVFWAWVLGALGALLAIPLSLLVKAVL 346


>gi|86130132|ref|ZP_01048732.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85818807|gb|EAQ39966.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 345

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/358 (15%), Positives = 130/358 (36%), Gaps = 20/358 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  Q  + ++I+    +    +  + + +L A+ +           + K++ +S+  
Sbjct: 5   KPNLLRQFFIIFLIILFGWLIFKEMATYLSGILGAITLFVLLRKWQEYLVKKRKWNSSVS 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +       + +VP+  L      ++ + V                +    G   AS +
Sbjct: 65  ACVLMAGSFLVILVPIAGLVLMLTSKISKAVENSGKVINIVKTEMADIESRFGLDIASSI 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                               ++  D+I            +  ++I  M   L++   +  
Sbjct: 125 D------------------TSSVTDWISSNLQGLAGGTFNVFIAIGLMYFMLYYMLTNRR 166

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +  + +      L     K I +   ++++S  +G+ ++A+ +GLV    + + GV    
Sbjct: 167 TFRESMLEYIP-LSEKNLKLIGKDSQELVKSNAIGIPLVALLQGLVALIGFLILGVEDPF 225

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               I  + +MIP     +    V I L   G+I+ A  + ++G + +   D   R  + 
Sbjct: 226 FWFAIVTVGSMIPFVGTALGIVPVCIILYAAGDIWQAIVMIIYGTVVVGSTDNLFRLVIQ 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                +  L T  G++ GV   G +GL  GP+++++  +I K       + K      
Sbjct: 286 KRLADVHPLITIIGVIVGVPLFGFIGLIFGPIVVSIFLLIVKIYKQEYGKEKPSEQEE 343


>gi|254796579|ref|YP_003081415.1| permease, PerM family [Neorickettsia risticii str. Illinois]
 gi|254589824|gb|ACT69186.1| permease, PerM family [Neorickettsia risticii str. Illinois]
          Length = 327

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 104/325 (32%), Gaps = 11/325 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
                  + I+ +      +   +    S    +++    +  L I+ L         ++
Sbjct: 1   MLFAFAFSFILAYFLNRSTTKLAA-LIGSRGIASLLVVTFLSILVILVLSLAIPLLYHQL 59

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              +        +     +          +  L +       S        L       I
Sbjct: 60  ILFLKGAPQLIAYIENSIKT--------SSPGLHSFLEERGMSSLFEYLLSLVPQLSTKI 111

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            +      ++  +  + +IF  + LF+  +D   ++  +  +        +     ++  
Sbjct: 112 TQHLWNSTLVLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRTTFNNQVTLMDA 171

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I    LG   I+   G++     + AG+P +  +GV T ++ +IP    I+    S  +
Sbjct: 172 SISGYVLGQMKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHLV 231

Query: 270 L--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                 +I +   + L       I    L P L+   + L  L   F +  G    GL G
Sbjct: 232 ALSRASSILDVLPITLIFIFCGAIEGMFLSPKLLSKSVNLHPLWVIFSMTVGGMLFGLAG 291

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
           + +   + A +A   +  I   K++
Sbjct: 292 ILLAVPVAATVAGFVRLGISYYKDS 316


>gi|119946920|ref|YP_944600.1| hypothetical protein Ping_3314 [Psychromonas ingrahamii 37]
 gi|119865524|gb|ABM05001.1| integral inner membrane protein UPF0118 [Psychromonas ingrahamii
           37]
          Length = 353

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 103/344 (29%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       +  + +  + I L  +        P L AL +     P      +++     
Sbjct: 1   MSNASSFARSAIFFSAIVISLAGVKVAAPIVVPFLLALFVAIICNPAVDFLSARRIPR-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA   V+                 +      +           +W           
Sbjct: 59  ---GIAIACVIFFIFAIFFGFGGVIGAAVNGFREAIPTYEAQFAVELQWFIAKMSEYNIV 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T    +                   I    +     F     ++  +++ + F   +
Sbjct: 116 ISMTAVREYFD--------------PAKIMTLVTSTLSSFSSVLGNVFLLLLTVVFMLSE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G   +++L    +       +K      K +       TI+++  GL++G A WL GV  
Sbjct: 162 GGGFAKKLHIAFDDSVK--TEKRLDHFLKSVNKYMAIKTIMSLMTGLMIGFALWLMGVDF 219

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +V   ++  ++  IP    I     ++ L  ++  +  A  +         ++   + P 
Sbjct: 220 YVLWALLAFLLNYIPNIGSIIAAVPAVILTFLQLGMGYAAAVIALFVGVNTLMGNVIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +G  + L  L  F  L+     +G++G+ +   L  +  +  +
Sbjct: 280 FMGRSLGLSTLVVFLSLIFWGWLLGMVGMLLSVPLTMIFKIALE 323


>gi|75907179|ref|YP_321475.1| hypothetical protein Ava_0956 [Anabaena variabilis ATCC 29413]
 gi|75700904|gb|ABA20580.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 367

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 104/321 (32%), Gaps = 13/321 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++     + K      + A+++ F      SS   +          +  V  + + I   
Sbjct: 27  LVFAFFQYFKPLVTIFVLAILLAFVLNYPVSSLQKR-GIKRGNAVGLVFVLTVIILIASG 85

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + +  E+   + L         + L+D   G        + L+          
Sbjct: 86  VTLLPIAIEQFHEIAKVLPLWIDSSQEKLQNLNDWAVGQHFKLNIGQILTRIIDKIPDEL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +       I           +   ++         +   DG  I + +          
Sbjct: 146 ESVSNQTFKIIVETVDSISEAIVTVVITF--------YLLVDGQRIWEGIFKKLPISLAQ 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K+++ + K  ++  +G   +A+  G      +    V   +  G+    +++IP G 
Sbjct: 198 ---KLNQSIQKNFQNYLIGQGTLALLMGTSQTLLFLAFQVQFGLLFGLGVGFLSLIPFGD 254

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +S   +++ +    + + A  +     +   I+D+ + P L+G    L  +     L+ 
Sbjct: 255 VVSLIVITLIVA-THDFWLALKILAVAVVIDQIIDQAIAPRLLGSFTGLRPIWVLVSLLV 313

Query: 319 GVRTMGLLGLFIGPVLMALIA 339
           G    GLLGL I   +  LI 
Sbjct: 314 GTYIGGLLGLLIAVPVAGLIK 334


>gi|171057363|ref|YP_001789712.1| hypothetical protein Lcho_0672 [Leptothrix cholodnii SP-6]
 gi|170774808|gb|ACB32947.1| protein of unknown function UPF0118 [Leptothrix cholodnii SP-6]
          Length = 353

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 106/327 (32%), Gaps = 8/327 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P ++A ++ +   P     +  +      + ++   ++M    V L  +      E
Sbjct: 29  PVLTPFVTAAVLAYALEPAVERLVRLRVPRLLAVVLVVLAAIMVALSVLL-LIVPILSQE 87

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  L  ++ +              +P         +  +   ++  +   +    + +  
Sbjct: 88  LPLLREQIPVLAARLNDTV-----VPWLRGYGIRVSLDIGSIKTFVVKYLSANVDDWLAT 142

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A   G   L    + + + + LF+   D   + ++L SL      A          
Sbjct: 143 VVSSARIGGSFVLALIGNAVLVPVVLFYLLADWSHLIERLRSLVPQRHAAAIHGFMSECD 202

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +V+     G  ++ +   +    A  LAG    + +GV T +   +P         ++  
Sbjct: 203 EVLGQYLRGQLLVMLVLAIYYTVALSLAGFDLALPVGVFTGLGIFVPYLGFGLGALLATL 262

Query: 269 LL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                  +++    + L   +   I    L P LVG  I L  +   F L+      G +
Sbjct: 263 AGALQFASVYGLLAVLLIYGVGQLIESFYLTPRLVGERIGLHPIAVIFALLAFGHLFGFV 322

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENK 353
           G+ I     AL  V  +    A  ++ 
Sbjct: 323 GVLIALPAGALALVALRRLRSAYLDSP 349


>gi|304415417|ref|ZP_07396069.1| putative inner membrane protein [Candidatus Regiella insecticola
           LSR1]
 gi|304282733|gb|EFL91244.1| putative inner membrane protein [Candidatus Regiella insecticola
           LSR1]
          Length = 353

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 70/347 (20%), Positives = 141/347 (40%), Gaps = 6/347 (1%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L         I+ +++ S   ++ F   +  A+++  T+WP+               
Sbjct: 8   RYDLTKLMFCALFILTMMITSFLVIQPFIIGLTWAVMVVITTWPLLIKLQIVLWGRRVLA 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP-GGMWASE 121
            ++ T+ ++  F++P+  L    ++    LV+          P   WL+ IP  G     
Sbjct: 68  VIVMTLLLILFFVIPIALLVNSLLINSAPLVAWASSPANMHFPEMEWLNAIPLIGSKIYN 127

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   +    +  +            +    A+  G     + + +  M++    FY  G
Sbjct: 128 SWHNLVEGGANELLAKLRPYVGEATTWFVAQAAHLGR----FVVHLALMVLFSVLFYFHG 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++Q +      L       +  +  + IR+  LG+ + A+ + ++ G A  +AG+P  
Sbjct: 184 ERVAQGIRRFAVRLADEKGDSVIVLAAQSIRAVALGLVVTALIQAVLGGIALAMAGIPYA 243

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L V+  I+ ++  G  +      I+L   G+    + L +W  I     D  LRP L+
Sbjct: 244 TLLTVLMFILCVVQLGPLLVLIPAIIWLYWSGDTTWGSILLVWSGILGTF-DAVLRPALI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                LP +   FG++GG+ ++G++GLFIGPV++A+   +    I  
Sbjct: 303 RRGADLPMILILFGVIGGLLSLGMIGLFIGPVVLAVSYRLILAWINE 349


>gi|331659770|ref|ZP_08360708.1| putative membrane protein [Escherichia coli TA206]
 gi|222035180|emb|CAP77925.1| UPF0118 inner membrane protein yhhT [Escherichia coli LF82]
 gi|312948027|gb|ADR28854.1| predicted inner membrane protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|331052985|gb|EGI25018.1| putative membrane protein [Escherichia coli TA206]
          Length = 349

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|157693317|ref|YP_001487779.1| sporulation integral membrane protein YtvI [Bacillus pumilus
           SAFR-032]
 gi|157682075|gb|ABV63219.1| sporulation integral membrane protein YtvI [Bacillus pumilus
           SAFR-032]
          Length = 372

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 103/343 (30%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +M   I    +V LY    F  P   ALI+     P+             F+ VI  +
Sbjct: 11  RSLMMISIAVFAVVFLYQSFPFLYPFWIALIVSCLIHPVVCKIEEITGMPRGFVVVIVLL 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L    +  L    +     L   +       I +              ++  +  +
Sbjct: 71  LFLVLAAGFITLLVAEIISGSAYLAKVLPGHLDQIIGIVERFFTDKILPLYHDVTAQFNT 130

Query: 129 HPQSLKILSETFLK----------TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                K      ++             +         F  +  D   +++F  +A FF  
Sbjct: 131 LQAGQKESILGQIQALGDEAAAKIGTFLSKTLELIPAFLGLLPDAAATLLFSALATFFIT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D F++ +    +    +  + + I   + K I        ++      ++     +  V
Sbjct: 191 KDWFTLKKYGSRIFPAKWMQHTRAILSEIKKAITGFMKAQLLLVAMTIGLVIIGLIILKV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +    + ++P     +     I         +         I + I  +   P
Sbjct: 251 EHALVIALCIGFVDLLPYIGSGTVFLPWIIYSAMTGNLSLAIGLGILYIVVLIQRQISEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G++  G LGL IGP  + +    
Sbjct: 311 KVLSKSIGLNPLATLVALFVGLKWFGFLGLVIGPASLVVWQAF 353


>gi|330722169|gb|EGH00069.1| Putative transport protein [gamma proteobacterium IMCC2047]
          Length = 357

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 106/342 (30%), Gaps = 22/342 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E     +  + +    +I+  +   +    P L ++ I     P  +    +        
Sbjct: 5   EHPSLTRFFLGFAAFVVIVAGMKAAESLLVPFLLSIFIAVICGPPLAWMTKRGVP----- 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++A + V+   +V  + +       + +    + +  +    +        GGM     
Sbjct: 60  LILAMLVVVAFIVVFGVAVGAIVSTSINDFSQDLPVYQEKLSTITATFLAWLGGMGFDLP 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +   + +                 +     +      +   +   +++ + F   +  
Sbjct: 120 INQIQENIK--------------PGTVMGMVGKALASLGNVMTNAFLILLTVIFILSESA 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +L+        +   +        I       T +++  G+++    W+ GV   V
Sbjct: 166 MFHSKLERAAGE--GSKSLQAIERFTSSINQYMAIKTGLSLLTGVLIMCWLWIIGVDYPV 223

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLV 301
             G++  ++  +P    I     ++ L +      +A    +       +V   L P ++
Sbjct: 224 LWGLVAFLLNFVPNLGSIIAAVPAVLLALIQLGTGDALLTAVVYVFANVLVGNVLEPRMM 283

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G  + L  L  F  LV     +G +G+ +   L   + +  +
Sbjct: 284 GKGLDLSTLVVFLSLVFWGWVLGPVGMLLSVPLTMTVKIALE 325


>gi|89069901|ref|ZP_01157235.1| hypothetical protein OG2516_06352 [Oceanicola granulosus HTCC2516]
 gi|89044577|gb|EAR50696.1| hypothetical protein OG2516_06352 [Oceanicola granulosus HTCC2516]
          Length = 380

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/340 (15%), Positives = 117/340 (34%), Gaps = 19/340 (5%)

Query: 1   MRETMLN---PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+          ++  M + ++ ++L   K    PV  AL I     P+     S    
Sbjct: 1   MRQPQPIDTLRNSLLALMAVILVGLALQVTKPVMVPVTLALFIALVVSPVEDRIASLFPR 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           +  +  ++A ++V+       + + + G   +   +S V       I           G 
Sbjct: 61  NVRWPGLLAAMAVILAVFATFISVIWIGARRIGGALSGVPGRINQYIREANLEERTMFGA 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +L                + +   GI F    A+R         L++   +  +   
Sbjct: 121 DIEQL---------------ASMVSDRGIAFASGLATRVLNSASTMVLTLALTVFLVLLM 165

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +    +++L+++ E    + WK   R++ + +R   +    +     +   +  W   
Sbjct: 166 LTEAPRAAKKLEAVSEAEETSRWKNAIRVIARKLRLYLMARAALGALTAVCYVAWLWFND 225

Query: 238 VPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP  +  G++  + + +P     +S      Y L+ G   N   + +   +   ++   +
Sbjct: 226 VPLLLVWGLLVFLFSFVPNLGSVLSGLLPVSYALLTGEGGNIWLIIVGLLVIEQVIGNFV 285

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            P + GG + L  L     ++      G LG  +G  +M 
Sbjct: 286 DPHVQGGQVSLSPLVILLSVIFWGWLWGPLGALLGVPVMI 325


>gi|256829276|ref|YP_003158004.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578452|gb|ACU89588.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 354

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/351 (12%), Positives = 116/351 (33%), Gaps = 13/351 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M     + Q ++ ++++ + +  +  +    APV+++++I F    +    + +      
Sbjct: 8   MSAVFSDTQLVILFLVLVVSVAIVLSVGNLLAPVIASVVISFLLDGLVRFLV-RFRWPRM 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + V+     M    V +L L    + ++ +L+  +             L      +  +
Sbjct: 67  LVVVLVFGLFMLFLAVMILALVPLLVSQITDLIDNIPWIISKAQNALTHLPRQYPILTEA 126

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++ T   S              +     +  F+         + + ++ M I +FFF +D
Sbjct: 127 QVQTVVDSLTVQF---------SQYGQQVLAFSLSSVRSVFSFVVYMVLMPIMVFFFLKD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   L              +   V     +   G     +       +++   G+  
Sbjct: 178 KDVILDWLCGFLPQDH-TLASTVWMDVKTQAGNYVRGRIWEVLIVWGATYASFLFFGLDY 236

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIVDKTLRP 298
            + L ++  +  +IP    +  T   + +      F+A  T   +   +   +    L P
Sbjct: 237 AMLLSLLVGLSVIIPYIGAVVVTVPVLIIAYIQWGFDAQFTWTMIVYLVIQLLDANLLVP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L+ G + L  + +   ++      G  G+F    L +L+  +     +  
Sbjct: 297 LLLSGAVNLHPIASITAILIFGGIWGFWGVFFAIPLASLVQSVLGVWKLRR 347


>gi|255022092|ref|ZP_05294096.1| protein of unknown function UPF0118 [Acidithiobacillus caldus ATCC
           51756]
 gi|254968450|gb|EET26008.1| protein of unknown function UPF0118 [Acidithiobacillus caldus ATCC
           51756]
          Length = 343

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 125/338 (36%), Gaps = 10/338 (2%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +++ I   + Y L  +  P+L   ++    WP                A++   + + 
Sbjct: 13  TLVLLLIYAGAAYALSPYAGPLLMGAVLAVVGWPWQLRLERYLRLPRWLGALLHATAWVA 72

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I+P + +    + E+  LV +                    G W S    +      S
Sbjct: 73  VIIIPAVAIVDSVLPELHLLVLRWQTGMPLLTLPLSVQQLPFVGHWLSTHLAEINGAYLS 132

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   + T+ +  +  F        L      +               +        
Sbjct: 133 NFFREHADIITSSLGQLWFFTLHTFFAALTVFALTLHGERIREMLQLGASELWG------ 186

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   ++      +  RS  +G+  + + EG+++G A+ +AG+       V TA+++
Sbjct: 187 ----RDRGERFLLAAREAARSVLIGLIGVGVIEGILIGIAFAVAGLKMWPLWLVATALIS 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP GA     A +++L   G+      +F WG + + + D  +RP L G   + PF   
Sbjct: 243 PIPFGATTVVGAATLWLAFSGHWLVGLIIFAWGLVVITVADLVIRPLLTGSQTRAPFFLV 302

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           FF ++GG +  GL+GL IGP+L+ +   IW+     ++
Sbjct: 303 FFSILGGAQAFGLIGLIIGPILVLMARGIWRSWERRVR 340


>gi|170679689|ref|YP_001745724.1| hypothetical protein EcSMS35_3758 [Escherichia coli SMS-3-5]
 gi|218702219|ref|YP_002409848.1| hypothetical protein ECIAI39_3955 [Escherichia coli IAI39]
 gi|170517407|gb|ACB15585.1| putative membrane protein [Escherichia coli SMS-3-5]
 gi|218372205|emb|CAR20067.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
          Length = 349

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKMVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|332162121|ref|YP_004298698.1| putative transport protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606171|emb|CBY27669.1| putative transport protein [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325666351|gb|ADZ42995.1| putative transport protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330864024|emb|CBX74103.1| aI-2 transport protein tqsA [Yersinia enterocolitica W22703]
          Length = 353

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 105/343 (30%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+  S   K +   T   V+   
Sbjct: 12  RLVAMLAMLVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKSLE-KIKIPRTLAIVLLVT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L  +    L        + L     +  +    +  +           ++      
Sbjct: 71  IIVLLMALLFSRLGSSLNEFARSLPQYRGMMLEKMRDLQEFAMRFNIEFSVDDIMKHVDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S   +++ + F   +   +  ++
Sbjct: 131 ------------------SMAMNFITRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  P     I R     +    +  TII+I  G+V+       GV      G++ 
Sbjct: 173 QLMFDN--PEQGNAILRRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 231 FVLNYIPNIGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  +  + +    K
Sbjct: 291 STLVVFLSLIFWGWLLGPIGMLLSVPLTIIAKIALELTPAGYK 333


>gi|187735225|ref|YP_001877337.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425277|gb|ACD04556.1| protein of unknown function UPF0118 [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 370

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 94/332 (28%), Gaps = 16/332 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + II   L   K    P++ +  +   S+P+ + F S+             +
Sbjct: 13  KILLMLASVIIITAGLQAGKPVLLPIVLSGFLAIVSYPLTTFFKSRLCFPHWLAVTFTVI 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               + +       Y G    K +  K        I   R           ++   + L 
Sbjct: 73  MDFGILVGLGYLAQYLGQDLAKTVTVKYQPLMMEKIHELRAFLIEQDWNNLADQMLQELP 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +                I  F++               ++I + FF  +       +
Sbjct: 133 DLLN-------------GQRIVAFSTGVMGQLASMLTFTTLILILMTFFLGEAPRFRANI 179

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + LG +       +        ++   +  T I+   GL+     +   V   +  G++ 
Sbjct: 180 NKLGHNS--DTGIRKFSKALAGVQKYLIIKTFISAVTGLLAFLLCYYMNVDFPLLWGIVA 237

Query: 249 AIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    I        L +   +      +     +    +   L P L+G    +
Sbjct: 238 FALNFIPTFGSIIAAIPPTLLAMLLISPTAGIIVAGGYLVINTALGNCLEPMLLGRQFGI 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                   ++      G +G+ +   +  LI 
Sbjct: 298 VTSMVLLSVIFWGWVWGPIGMLLAVPITMLIK 329


>gi|310779775|ref|YP_003968107.1| protein of unknown function UPF0118 [Ilyobacter polytropus DSM
           2926]
 gi|309749098|gb|ADO83759.1| protein of unknown function UPF0118 [Ilyobacter polytropus DSM
           2926]
          Length = 361

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 103/322 (31%), Gaps = 1/322 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
              +  P +  L+I     P+ + F +K +       V + +    + I   L +     
Sbjct: 37  FYKYIQPFIYGLVIAVILEPLITFFSNKFKFGRRLGIVTSLLVFSFILIGVFLIVIPPLS 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             + +L+                + +      A         +  S         ++  I
Sbjct: 97  KSIGDLIESFPQMKTKSQTWVIKVFEANKDRLAFLDEKTLKENLMSFIGSQVANTQSLVI 156

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            F  +         +D     +  +  L +       I + L  + +             
Sbjct: 157 SFFEKIVK-LTFSIVDVFFGFLIAVYFLLYKKYFIGFIRKTLSIILKKEAVNETLDFLYE 215

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             ++  +   G +++++  G+V     +   VP  V +  +  +  MIP    I    +S
Sbjct: 216 SREIFLNYLAGRSLVSLFVGVVCFIIMFFTNVPYAVLISFVIGLGNMIPYIGSIIAGIIS 275

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             L++         +++   +   I    L P ++G  + +        ++ G    G +
Sbjct: 276 TVLVLFTLPLKVIPMWIAILVAQQIDSWILGPKILGNSVGMNPFWVVTAVLIGGNVGGPI 335

Query: 327 GLFIGPVLMALIAVIWKESIMA 348
           G+ IG  + A+I +I+ + +  
Sbjct: 336 GMLIGVPVFAMIKIIYYKILDK 357


>gi|110643716|ref|YP_671446.1| hypothetical protein ECP_3569 [Escherichia coli 536]
 gi|117625751|ref|YP_859074.1| hypothetical protein APECO1_2980 [Escherichia coli APEC O1]
 gi|191170454|ref|ZP_03032007.1| putative membrane protein [Escherichia coli F11]
 gi|218560542|ref|YP_002393455.1| hypothetical protein ECS88_3877 [Escherichia coli S88]
 gi|218691759|ref|YP_002399971.1| hypothetical protein ECED1_4147 [Escherichia coli ED1a]
 gi|110345308|gb|ABG71545.1| putative membrane protein [Escherichia coli 536]
 gi|115514875|gb|ABJ02950.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|190909262|gb|EDV68848.1| putative membrane protein [Escherichia coli F11]
 gi|218367311|emb|CAR05089.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|218429323|emb|CAR10282.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
 gi|294490797|gb|ADE89553.1| putative membrane protein [Escherichia coli IHE3034]
 gi|307555568|gb|ADN48343.1| predicted inner membrane protein [Escherichia coli ABU 83972]
 gi|307628547|gb|ADN72851.1| inner membrane protein YhhT [Escherichia coli UM146]
 gi|323950142|gb|EGB46025.1| hypothetical protein ERKG_03551 [Escherichia coli H252]
 gi|323954770|gb|EGB50551.1| hypothetical protein ERLG_03983 [Escherichia coli H263]
          Length = 349

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPRFNKELTRKLFKLQEMLPFLNLHMSPERILQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|306816182|ref|ZP_07450320.1| inner membrane protein YhhT [Escherichia coli NC101]
 gi|305850578|gb|EFM51035.1| inner membrane protein YhhT [Escherichia coli NC101]
          Length = 349

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 111/333 (33%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +++   + +IL  ++        +L AL       P+ + FI +  +       +A  
Sbjct: 12  RILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++ L  L         E +S +   N+        L ++   +       + L 
Sbjct: 67  IVVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERILQ 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S K+++ T     G+           M  +     +  +   + F   +       L
Sbjct: 127 RMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGL 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                               K +       T++++  G+++     L G    +   V+ 
Sbjct: 187 HRAL----------------KGVSHYLALKTLLSLWTGIIVWLGLELMGAQFALMWAVLA 230

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P     IS     I +L+   I+    +     +   ++   L P ++G  + +
Sbjct: 231 FLLNYVPNIGAVISAVPPMIQVLLFNGIYECILVGALFLVVHMVIGNILEPRMMGHRLGM 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +  F  L+     +G +G+ +   L ++  +
Sbjct: 291 STMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|21222208|ref|NP_627987.1| integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|256786702|ref|ZP_05525133.1| integral membrane protein [Streptomyces lividans TK24]
 gi|289770597|ref|ZP_06529975.1| integral membrane protein [Streptomyces lividans TK24]
 gi|10178903|emb|CAC08478.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
 gi|289700796|gb|EFD68225.1| integral membrane protein [Streptomyces lividans TK24]
          Length = 362

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 88/306 (28%), Gaps = 19/306 (6%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P+++  + K     +  A +   +V+ +    +  +    +    ++V+ +  A Q   
Sbjct: 53  RPLHARLV-KAHVQRSLAAGLTCAAVLAVVGGAVYIVVSALVETGDQIVTSLRDAAQGIA 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                                           +   L                 +  +  
Sbjct: 112 D-----------------HFGAAGTSLDDLASNARELLGKFGGTAASGVVTGISVVGEMI 154

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
              +  ++ +FFF RD       + +L         + ++R     +     G T+IA+ 
Sbjct: 155 AMAVLALLLVFFFLRDSDRAVTTVRALAPPGGADTVEAVARRAFGAVEGFMRGTTLIALI 214

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFL 283
           +   +     +  VP  V LG +  + A IP     IS     +  L       A     
Sbjct: 215 DAFCITVGLLVLRVPGAVGLGALVFVGAYIPYLGAFISGAVAVLVALADRGFVIALWALG 274

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                  +    L+P +    +++        L  G    G+LG+ +   L A    +  
Sbjct: 275 VVLAVQVLEGHVLQPMIQSRTVQMHPAVVLLALTAGASVAGILGMLLAVPLTAAAFGVVH 334

Query: 344 ESIMAI 349
           E     
Sbjct: 335 ELQARY 340


>gi|316934067|ref|YP_004109049.1| hypothetical protein Rpdx1_2731 [Rhodopseudomonas palustris DX-1]
 gi|315601781|gb|ADU44316.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           DX-1]
          Length = 382

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/348 (12%), Positives = 94/348 (27%), Gaps = 2/348 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L + +   G    + + ++ G     +                 +  + + 
Sbjct: 24  IATVTFAALLYASWHFAGTLFLIFAGILFGVFLNALTELAGRVVGGPHGLRLALVCLVLS 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            LF+            + K L   + +   +              +    + +       
Sbjct: 84  GLFVGVAFLGGNTISQQAKALSGTIKMQIVNVKGFLERNGVDTSFLDLGNVGSAAHPETA 143

Query: 132 SL--KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               + L       +G   I     +  +  +    +   ++     F          L 
Sbjct: 144 PSPPRNLPTPGELASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPEVYRNGLV 203

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A  + +      +++   L   I  I    V      L G+P    LG+   
Sbjct: 204 RLAPRRHRAQAEIVVGKTGDMLKRWLLAQLITMIAVFAVTAIGLSLIGIPGAFILGIQAG 263

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++A IP    I    V +   I          FL       +    L P +    I +P 
Sbjct: 264 LLAFIPTVGAILGGLVIVLAAIASGWIAVLSAFLLFLGVHALESYILTPLIQRQAIDIPP 323

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
              F   +      GL GL +   LMA+  V+         ++ +  +
Sbjct: 324 ATLFATQILLGIVFGLWGLALALPLMAIGRVVLDHLRGEEPDDGDAPA 371


>gi|269964566|ref|ZP_06178805.1| putative permease protein [Vibrio alginolyticus 40B]
 gi|269830693|gb|EEZ84913.1| putative permease protein [Vibrio alginolyticus 40B]
          Length = 356

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 102/323 (31%), Gaps = 19/323 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LYF K    P++ +  I     P  +    K          I  V  +   +   +   
Sbjct: 25  GLYFAKPILLPIVLSTFISLLCSPFINYLEDKGLPR-----AITVVLTLSFLVGASIIGL 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  K+  S++    ++       ++                     L I ++  + 
Sbjct: 80  AAMSEPAKQWWSELPSIVKNVSQEVSEVTK-----------ASADHLNTPLNIANDMSMD 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EVGNNTVFSLVKTLATTTPTILTQAMIVLFMVYFMLNHGRSLFRKSVSYLHGFAKQRQAI 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ + + K +      +T++  G GL +G+ +++ G+      G    +M   P   P+ 
Sbjct: 189 ELVKALQKDLSRYIGTITLVNAGLGLSVGAVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 262 FTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++      ++     +     +   I  + + P L+G    L  L  F  LV  
Sbjct: 249 SMVSFGFVAYLQLESVSFMLTVVSVYLLLNLIESQFVTPTLLGKRFNLNPLVIFVWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G +GL IG  L+  I ++ 
Sbjct: 309 GWLWGGMGLLIGVPLLVCINILV 331


>gi|26987450|ref|NP_742875.1| permease [Pseudomonas putida KT2440]
 gi|24982112|gb|AAN66339.1|AE016262_7 transporter, PerM family [Pseudomonas putida KT2440]
          Length = 365

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 131/344 (38%), Gaps = 3/344 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +++ +    + F   +L A+I+  T +P++     +      + A +  + V+ L 
Sbjct: 24  LVAALVIFAFQVFQPFLELMLWAVILAVTLYPLHCRIQHRTGLKQGYAATLVVLLVLVLL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VP+  +       +  LV+ +          P  ++  P             S   +  
Sbjct: 84  LVPIYLVVMSIGESVDSLVTLLKSGAWSVPVPPDSVAAWPLIGPKVHALWLAASENMASV 143

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +             +   A+  G  FL +  +II   + + F  R               
Sbjct: 144 LNQWMPQIKGAGLTVLGAAASAGGAFLLFIGAIIISGVIMAFGERGE---IATQRIAMRV 200

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K ++ +    IR+   G+  IA  + L++G  + + GVP    L ++  ++ + 
Sbjct: 201 SGAERGKPLATLCTATIRAVAQGVIGIAFIQMLLIGVGFVVKGVPGAGMLAIVILMLGIA 260

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
              A +    V IY+        AT +F        + D  L+P L+G  + +P      
Sbjct: 261 QAPATLVTLPVIIYVFNAEGFTVATIIFAIYTFVAGLADNVLKPLLLGRGVDVPMPVVLI 320

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G +GG+   G++GLFIGPV++ +  V++ + +      +    +
Sbjct: 321 GALGGMVVKGIIGLFIGPVILGVTYVLFWQWVALQVPEQPAPPA 364


>gi|254302758|ref|ZP_04970116.1| possible MFS superfamily major facilitator transporter macrolide
           symporter [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
 gi|148322950|gb|EDK88200.1| possible MFS superfamily major facilitator transporter macrolide
           symporter [Fusobacterium nucleatum subsp. polymorphum
           ATCC 10953]
          Length = 363

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 119/327 (36%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F  V+ ++ I     PI      K + +      ++   V+ +F++  L +    + 
Sbjct: 37  KNYFMTVIMSIFIAILLEPIAKYLKKKSKINDILAISLSITLVVLVFVILSLMIIPEIVS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +KEL       ++  + + + + D         +    +    +  I +      + + 
Sbjct: 97  SIKELNGIYPYLSEKAMAIGKKVVDYLAKKDIYTIDINKIDSYFTNFIKNNITGIQDIVS 156

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I      + + F +  L+ +   + L        ++   +  +       Y  K  ++ 
Sbjct: 157 TIISGLIDWTIGFTNLFLAFVLAFLILLDKKHLIKTLENIIIIIFGVKNTPYVIKKLKLS 216

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             +  S   G  I++   GL +     + G P      ++  +  MIP    I    ++ 
Sbjct: 217 KDIFLSYVSGKLIVSAIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSIIGGIIAF 276

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +   I   +    + P ++G  + L        ++      GL+G
Sbjct: 277 FLILLVAPIKTIILLIAIIISQLVDGFIVGPKIIGDKVGLNTFWVMVSMIIFGNLFGLVG 336

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKE 354
           +F+G  ++++I + + + + A +  ++
Sbjct: 337 MFLGTPILSIIRLFYIDLLKAKQGGEQ 363


>gi|110803722|ref|YP_699066.1| permease [Clostridium perfringens SM101]
 gi|110684223|gb|ABG87593.1| putative membrane protein [Clostridium perfringens SM101]
          Length = 345

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         +   +  +  G++              +     T      +
Sbjct: 94  KEGESFDGLINGVELFINDLIMKMKFMELGIF-------------DVIEAQVTEKLNILL 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                      + F +  L+   + +  ++F   G  +S +          A  K + R 
Sbjct: 141 VSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNLGRD 200

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +     +
Sbjct: 201 VDKVLGKYILGQLLLSLLVGIMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGAIPA 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + +         + L   I   I    + P +    I +  +     L+ G +  GLL
Sbjct: 261 IVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIGGLL 320

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+     +  +I V++ + 
Sbjct: 321 GMVFIVPIAVVIKVLFDDW 339


>gi|55821093|ref|YP_139535.1| hypothetical protein stu1068 [Streptococcus thermophilus LMG 18311]
 gi|55823019|ref|YP_141460.1| hypothetical protein str1068 [Streptococcus thermophilus CNRZ1066]
 gi|33313719|gb|AAQ04247.1|AF430847_14 EpsX [Streptococcus thermophilus]
 gi|22218127|gb|AAM94579.1| EpsX [Streptococcus thermophilus]
 gi|22316058|gb|AAL32508.1| CpsX [Streptococcus thermophilus]
 gi|55737078|gb|AAV60720.1| possibly involved in exopolysaccharide export [Streptococcus
           thermophilus LMG 18311]
 gi|55739004|gb|AAV62645.1| conserved hypothetical protein [Streptococcus thermophilus
           CNRZ1066]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 116/371 (31%), Gaps = 29/371 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFA-----------PVLSALIIGFTSWPIYSSFISKK 55
                +  +++F     +Y                  P L    I F    + S +    
Sbjct: 4   TKNQFIWLVVLFFSCFLIYTYWETVVSICNKIFVASQPFLFGAGIAFVVNILMSFYEKIL 63

Query: 56  ----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
                     +       ++A  ++  +F   +  +    +  +  L+S+   A  + I 
Sbjct: 64  IKFIPFGFITKIKRPVSLLLAFATIGLIFTWVVFTVLPDLIDSINTLISQDRSAINNLIN 123

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                  +   +      T+      S        +     +F+    S          +
Sbjct: 124 WLLKNKSLQKIIQDLGGVTQVRELINSYSAQLLQQIMNGLTNFLTSLTS-----LPSTLI 178

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPAYWKKISRIVPKVIRSTFLGMTIIA 222
           ++   I+   +       +  Q++ L +     +   +  +  I+     + F+  +I A
Sbjct: 179 NLFISIVFSCYVLVGKEKLGSQVNRLVDVYLGRYGKTFHYVVAILNNRFHNFFVYQSIEA 238

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
              G +      +   P    + ++    AMIP         +   L++  ++  A    
Sbjct: 239 CILGTLCYIGMRIFNFPYAATISILIGFSAMIPVLGAYIGVTIGTILIMTHSVTLALLFV 298

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +  I        + P++VGG   LP +     +  G    G+LG+ +   + A +  I 
Sbjct: 299 AYVVILQQFEGNLIYPYVVGGSTGLPVVWVILAITIGSALGGILGMLVSVPVAATLYQIV 358

Query: 343 KESIMAIKENK 353
           K++++  ++ K
Sbjct: 359 KDNVVTREKAK 369


>gi|17230438|ref|NP_486986.1| hypothetical protein alr2946 [Nostoc sp. PCC 7120]
 gi|17132040|dbj|BAB74645.1| alr2946 [Nostoc sp. PCC 7120]
          Length = 367

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 104/321 (32%), Gaps = 13/321 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++     + +      + A+++ F      S+   +     +    +  V  + + I   
Sbjct: 27  LVFAFFQYFQPLVTIFVLAILLAFVLNYPVSALQKR-GIKRSNAVGLVFVLTVIILIASG 85

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + +  E+   + L         + L+D   G        + L+          
Sbjct: 86  VTLLPIAIEQFHEIAKILPLWIDSSQEKLQNLNDWAIGQHFKLNIGQILTRIIDKIPDEL 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +       I           +   ++         +   DG  I + +          
Sbjct: 146 ESVSNQTFKIIVETVDSISEAIVTVVITF--------YLLVDGQRIWEGIFKKLPMSLAQ 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K+ + + K  ++  +G   +A+  G      +    V   +  G+    +++IP G 
Sbjct: 198 ---KLKQSIQKNFQNYLIGQGTLALLMGTSQTLLFLAFQVQFGLLFGLGVGFLSLIPFGD 254

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +S   +++ +    + + A  +     +   I+D+ + P L+G    L  +     L+ 
Sbjct: 255 VVSLIVITLIVA-THDFWLALKILAVAVVIDQIIDQAIAPRLLGSFTGLRPIWVLVSLLV 313

Query: 319 GVRTMGLLGLFIGPVLMALIA 339
           G    GLLGL I   +  LI 
Sbjct: 314 GTYIGGLLGLLIAVPVAGLIK 334


>gi|68248943|ref|YP_248055.1| hypothetical protein NTHI0457 [Haemophilus influenzae 86-028NP]
 gi|145628691|ref|ZP_01784491.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           22.1-21]
 gi|145638751|ref|ZP_01794360.1| hypothetical protein CGSHiII_08551 [Haemophilus influenzae PittII]
 gi|319775792|ref|YP_004138280.1| hypothetical protein HICON_11360 [Haemophilus influenzae F3047]
 gi|319896671|ref|YP_004134864.1| hypothetical protein HIBPF02880 [Haemophilus influenzae F3031]
 gi|329123634|ref|ZP_08252194.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
 gi|68057142|gb|AAX87395.1| conserved hypothetical protein [Haemophilus influenzae 86-028NP]
 gi|144979161|gb|EDJ88847.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           22.1-21]
 gi|145272346|gb|EDK12254.1| hypothetical protein CGSHiII_08551 [Haemophilus influenzae PittII]
 gi|309750241|gb|ADO80225.1| Putative permease [Haemophilus influenzae R2866]
 gi|317432173|emb|CBY80524.1| conserved hypothetical protein [Haemophilus influenzae F3031]
 gi|317450383|emb|CBY86599.1| conserved hypothetical protein [Haemophilus influenzae F3047]
 gi|327469833|gb|EGF15298.1| PerM family permease [Haemophilus aegyptius ATCC 11116]
          Length = 348

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 115/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S       A  ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAAKEERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|37521449|ref|NP_924826.1| hypothetical protein glr1880 [Gloeobacter violaceus PCC 7421]
 gi|35212446|dbj|BAC89821.1| glr1880 [Gloeobacter violaceus PCC 7421]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 22/344 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           T ++   ++R++++F    +L  L             A ++                   
Sbjct: 15  TRISTNALVRFLLLFACGWALLTLFSYFEYVITTFTFAAVLALLLNYPARYLERFVG--R 72

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                +  V  + L +V +  L    + ++++L + +V            L +       
Sbjct: 73  GASLAVVIVLSLILMVVVVAGLGVTIVGQVQQLANAIVNTFNSSADPLTRLEEFLTARRI 132

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                        L   +  F+  +   F+  + +   ++ + +            F   
Sbjct: 133 RIDLEPVQQQATELARNTIGFILGSLPSFLGSYVTFIVIVVVAF------------FMLA 180

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I   L             + S+ V       F G  +IA+  G      + L  +P
Sbjct: 181 DGGRIWGLLIKFLPAAQR---VRFSQSVQSNFAGFFQGQLLIALFLGTASFVVFTLLQIP 237

Query: 240 SHVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L +  A+  +IPG         V + +L++G+      LF        + D  + P
Sbjct: 238 FALVLAITVALFDLIPGIGATLGVGLVCLTVLVQGDWVATLKLFAACIALQQVQDNFIAP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            ++   + L  +  FF L+ G R  GL+G+F+   +  ++  + 
Sbjct: 298 RVMQSTVNLNPVIVFFALLVGARIGGLIGVFLAVPVAGVVVSLL 341


>gi|255101183|ref|ZP_05330160.1| hypothetical protein CdifQCD-6_10269 [Clostridium difficile
           QCD-63q42]
 gi|255307057|ref|ZP_05351228.1| hypothetical protein CdifA_10742 [Clostridium difficile ATCC 43255]
          Length = 361

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 102/323 (31%), Gaps = 4/323 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +              +   +    H+ H     +   +          
Sbjct: 102 NRLINEMPMYTDYIDSFIEK---NMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNF 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 159 LIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    +     + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
           F+   + A++     + I    +
Sbjct: 339 FLSVPIAAVVKTYVDKYIDNRLQ 361


>gi|24114734|ref|NP_709244.1| hypothetical protein SF3492 [Shigella flexneri 2a str. 301]
 gi|30065249|ref|NP_839420.1| hypothetical protein S4271 [Shigella flexneri 2a str. 2457T]
 gi|110807301|ref|YP_690821.1| hypothetical protein SFV_3477 [Shigella flexneri 5 str. 8401]
 gi|187730420|ref|YP_001882139.1| hypothetical protein SbBS512_E3848 [Shigella boydii CDC 3083-94]
 gi|218707069|ref|YP_002414588.1| hypothetical protein ECUMN_3937 [Escherichia coli UMN026]
 gi|293407056|ref|ZP_06650980.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298382802|ref|ZP_06992397.1| inner membrane protein yhhT [Escherichia coli FVEC1302]
 gi|24053951|gb|AAN44951.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30043511|gb|AAP19231.1| hypothetical protein S4271 [Shigella flexneri 2a str. 2457T]
 gi|110616849|gb|ABF05516.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|187427412|gb|ACD06686.1| putative membrane protein [Shigella boydii CDC 3083-94]
 gi|218434166|emb|CAR15083.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|281602822|gb|ADA75806.1| hypothetical protein SFxv_3808 [Shigella flexneri 2002017]
 gi|284923465|emb|CBG36560.1| putative membrane protein [Escherichia coli 042]
 gi|291425867|gb|EFE98901.1| conserved hypothetical protein [Escherichia coli FVEC1412]
 gi|298276638|gb|EFI18156.1| inner membrane protein yhhT [Escherichia coli FVEC1302]
 gi|320175695|gb|EFW50783.1| putative PerM family permease [Shigella dysenteriae CDC 74-1112]
          Length = 349

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|291004927|ref|ZP_06562900.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 407

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 89/312 (28%), Gaps = 14/312 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + +    L +L     PV+ AL++     P  +    K          +   
Sbjct: 36  RVLVVAAAVGLAGYVLTYLAAVAMPVVIALLLAALLGPFSNWLTGK-GAPRALATALVVC 94

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      L  +    + ++  L ++V    + G    R            EL      
Sbjct: 95  VGLISVTGVLALVVGTVVADLPRLQAQVSNTLESGEAWLRLGPLRLDQRQLDELVNDA-- 152

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T         I        +   +     + ++  L FF  DG  I   L
Sbjct: 153 ----------TATLQTHQGGIISGVLSTAVTSGEVLGGALLVLFTLIFFLYDGDRIWNFL 202

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R     +         +A  + + +G +  L GVP   AL  + 
Sbjct: 203 LRGFPLGSRDRVDLAGRSGFDALTGYVRATAAVACMDAIGVGVSAALIGVPLAPALAALV 262

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P     I+ T   +  L+    + A  +     +   +    L+P L+G    L
Sbjct: 263 FLGAFVPYLGILITGTLAVLVCLVTVGFWPAVLMAAIVIVVTQLEGHVLQPLLLGRASHL 322

Query: 308 PFLPTFFGLVGG 319
             L     +  G
Sbjct: 323 HPLAVVLSISVG 334


>gi|229824112|ref|ZP_04450181.1| hypothetical protein GCWU000282_01416 [Catonella morbi ATCC 51271]
 gi|229786466|gb|EEP22580.1| hypothetical protein GCWU000282_01416 [Catonella morbi ATCC 51271]
          Length = 379

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 113/335 (33%), Gaps = 12/335 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK-----------EESSTFLAVIATVSVMCLFIVPLL 79
             P+++  I  +    +   +                        ++ ++ +   I+ L+
Sbjct: 39  LGPIINGAIFAYILNLLMVRYEGLLTKVQGQVPGVKSLKRPVSMFLSLLTFVLAVIMILV 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQSLKILSE 138
            +       +   +  +   +           +  P           +        +   
Sbjct: 99  LVLPQLSTAISRFIEVIPGVSTWLQRAIEEYDAYFPQLQTLMSQLNINWGSLIQQSMTVL 158

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L +N ++      +      ++  LS++  +  L    R      + + +  +     
Sbjct: 159 NTLSSNFLNITFNTITGVASNTINSILSLMVALYILGSKERLLLQGKRVIMAYLKPSHAQ 218

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               I R++ +   + F+GMT+  I  G ++  A  +  +P    LGVI  +MA+IP   
Sbjct: 219 TLLDIIRLMNESFTNFFVGMTLEGIILGSLVTVAASIFNLPYAGMLGVIAGVMALIPIIG 278

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                AV   +L+  +   A    +   I + +    + P +VGG I LP L        
Sbjct: 279 GYISAAVGTLMLLAVSPSQALFYLVMVIIIMQLEGNLIYPRVVGGSIGLPGLWVLVAFTV 338

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G   MG+ G+ +G  L A +  +    ++  ++ +
Sbjct: 339 GGGLMGISGMILGIPLAATLYKLLGRDVLMREKRQ 373


>gi|157962115|ref|YP_001502149.1| hypothetical protein Spea_2294 [Shewanella pealeana ATCC 700345]
 gi|157847115|gb|ABV87614.1| protein of unknown function UPF0118 [Shewanella pealeana ATCC
           700345]
          Length = 360

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 76/351 (21%), Positives = 137/351 (39%), Gaps = 4/351 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++ + +          +  +   ++   I+     P+++    +   S    +V +   V
Sbjct: 12  VLLFALAIAFYACYLLISPYLGSIVLGFIVSILFLPLHTRIQQRMPNSPNMASVFSCTLV 71

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSH 129
             + ++PLLF+    M E    ++        G          I  G+     W    + 
Sbjct: 72  TVMVLIPLLFVAMAIMNEGINFMTNAYGWLTDGGAKSFLAHPYIQSGVALLNKWLPFDTI 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +       T     +   ++       D  L    M+  LFFF RD   I     
Sbjct: 132 KIDELVQQAAGKVTQLSSSLLTASTGIAGDVADTVLDFGLMLFVLFFFLRDQQKIIDNTR 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +   L  +    I   +  V +S  LG  + A+ +G + G A  LAG  S +  G + A
Sbjct: 192 HIIP-LSRSQQGLIFNEIGVVAKSAVLGAFLTALAQGALGGIAMSLAGF-SGLFWGSMMA 249

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             + IP     + +   SIYL I G+   A  L +WG + +  +D  LRP+L+ G   + 
Sbjct: 250 FASFIPFVGTAMIWLPASIYLFITGDWQWALFLIVWGVVVIGSIDNFLRPWLMQGNTGMS 309

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            L  FF L+GG++  GL+GL  GP++ A+  V+ +   +  K+  E+    
Sbjct: 310 TLLLFFSLLGGLQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE 360


>gi|146292797|ref|YP_001183221.1| hypothetical protein Sputcn32_1697 [Shewanella putrefaciens CN-32]
 gi|145564487|gb|ABP75422.1| protein of unknown function UPF0118 [Shewanella putrefaciens CN-32]
 gi|319426101|gb|ADV54175.1| protein of unknown function UPF0118 [Shewanella putrefaciens 200]
          Length = 360

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/360 (16%), Positives = 120/360 (33%), Gaps = 11/360 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +E   +PQ +    I+  + + +YF  G  AP+L AL++ F      +  + K   + T 
Sbjct: 10  QERFSDPQAVTLMAILIGLALLIYFAGGLLAPLLVALVLAFLLEWPVAQML-KLGINRTM 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  V  + + ++    L      +   L++ +      G+   + L +        E
Sbjct: 69  GASLVLVLFLGVVMLLTFGLIPSVWRQGVSLMADLPNMIDKGLQTLQALINQYPQFINPE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +    +  L T  +  I +    +    L   +  I + + +FFF +D 
Sbjct: 129 QL-------NVMVAELKKMLDTQHVLDIAKQIIGYSASLLVLMVYAILVPLLVFFFLKDK 181

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +              +++   + + I +   G  I  +  G+     +   G+   
Sbjct: 182 DQLIRGSKRFFPA-NRQLARQVWFEMNQQIFNYIRGKVIEIVIVGVASYIFFAFMGLRYS 240

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             LGV+T +  +IP       T     +     G       L L   I   +    L P 
Sbjct: 241 ALLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFTSEFGYLMLGYGIIQALDGNLLVPI 300

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    + L  +     ++      G+ G+F    L +L+  +         +      SN
Sbjct: 301 LFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVINAWPKTEIQEPVPAPSN 360


>gi|329922576|ref|ZP_08278151.1| putative membrane protein [Paenibacillus sp. HGF5]
 gi|328942120|gb|EGG38402.1| putative membrane protein [Paenibacillus sp. HGF5]
          Length = 359

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 98/305 (32%), Gaps = 9/305 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++ FI    L F      P++ +    +   P+      + + + +   ++  V    + 
Sbjct: 26  LVDFIFRPVLSFFSIILVPLMLSGFFYYLLRPLVDLLEKR-KLNRSLAILLLYVVFAGIL 84

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +L ++     ++  LV              + L +              L+      
Sbjct: 85  TGFILGVWPSLRDQIVALVQNAPALFAKLGEQLQELENNGFFQDIFPENANPLTQLTD-- 142

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                     G  F+  +         ++ + +    I L++  ++G    + + S    
Sbjct: 143 ------YLNQGFTFLTNYIMNLFSFVSNFAIVLFTFPILLYYMLKEGGKFGKMVVSFLPD 196

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      +   +   ++   +G  ++ +  G+++   + + G+P  + L V+  I   I
Sbjct: 197 RFKGEGASVLDEINNALKGFIVGRVLVNLALGVLMYIGFLIIGLPYALLLTVVAVIANFI 256

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I  +   + +    +   A    +       I D  + P++ G  + +  +    
Sbjct: 257 PFIGAILSSIPIVIIGFIQSPGTAIWSLVVILAAQQIQDNLIGPYIFGKQLAIHPITIII 316

Query: 315 GLVGG 319
            ++ G
Sbjct: 317 LVLVG 321


>gi|182625645|ref|ZP_02953414.1| putative domain of unknown function [Clostridium perfringens D str.
           JGS1721]
 gi|177909047|gb|EDT71522.1| putative domain of unknown function [Clostridium perfringens D str.
           JGS1721]
          Length = 345

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         +   +  +  G++              +     T      +
Sbjct: 94  KEGESFDGLINGVEAFINDLIMKMKFMELGIF-------------DVVEAQVTEKLNILL 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                      + F +  L+   + +  ++F   G  +S +          A  K + R 
Sbjct: 141 VSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNLGRD 200

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +     +
Sbjct: 201 VDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGAIPA 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + +         + L   I   I    + P +    I +  +     L+ G +  GLL
Sbjct: 261 IVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIGGLL 320

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+     +  +I V++ + 
Sbjct: 321 GMVFIVPIAVVIKVLFDDW 339


>gi|126699668|ref|YP_001088565.1| hypothetical protein CD2051 [Clostridium difficile 630]
 gi|115251105|emb|CAJ68936.1| putative membrane protein [Clostridium difficile]
          Length = 361

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 102/323 (31%), Gaps = 4/323 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +              +   +    H+ H     +   +          
Sbjct: 102 NRLINEMPMYTDYIDSFIEK---NMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNF 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 159 LIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARSKADNIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    +     + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
           F+   + A++     + I    +
Sbjct: 339 FLSVPIAAVVKTYVDKYIDNRLQ 361


>gi|77165520|ref|YP_344045.1| hypothetical protein Noc_2055 [Nitrosococcus oceani ATCC 19707]
 gi|254434948|ref|ZP_05048456.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883834|gb|ABA58515.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207091281|gb|EDZ68552.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 380

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 106/341 (31%), Gaps = 10/341 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   +   +L   Y L+  F P+L A    +   P+        +        +    V
Sbjct: 26  VLWIFLGAFLLWFGYQLRAIFIPLLIAFAFAYLFDPLIRWGERYCKMPRPVTISLILALV 85

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   +  L +L    + +  EL+  ++   Q        +  +       E W +HL   
Sbjct: 86  IIGGMSLLAWLGPEFLKQFAELLRGLIDYLQTLATEYD-IHLLKSLRAKLEKWVQHLEEN 144

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I+  T +   G               +      + +    F       +I +++  
Sbjct: 145 PVGFIVENTEILLIGTTQAVTVVRHILGTAVYIGTMALLIPFYFFMIAWHFGAIIRKIKD 204

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--GVPSHVALGVIT 248
           L           I + + + + + F G  +I +    +    +      VP  + LG+  
Sbjct: 205 LMPAREKDQTLAIIKEMDEAVAAFFRGRLVIVLVTAGLFSLGWSPLFADVPYWLVLGISA 264

Query: 249 AIMAMIPGGAPISFT-------AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            I+  IP  A +++            +                  +  FI    L P++ 
Sbjct: 265 GILNFIPYLAALAWLAAILSKGLAIGFSGDFDLWLVIIWPSFVYGVVQFIDGWLLTPWIQ 324

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G  + L  +     ++ G    GL GL +   + A   +++
Sbjct: 325 GRSLNLGAITVIIVVLIGGTMGGLYGLLLCIPMAACAKILF 365


>gi|323164806|gb|EFZ50598.1| hypothetical protein SS53G_4926 [Shigella sonnei 53G]
          Length = 349

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|145640286|ref|ZP_01795870.1| hypothetical protein CGSHiR3021_09515 [Haemophilus influenzae
           R3021]
 gi|145274872|gb|EDK14734.1| hypothetical protein CGSHiR3021_09515 [Haemophilus influenzae
           22.4-21]
          Length = 348

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 115/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S       A  ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAAKEERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|332112088|gb|EGJ12064.1| hypothetical protein RBXJA2T_17117 [Rubrivivax benzoatilyticus JA2]
          Length = 359

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 127/348 (36%), Gaps = 2/348 (0%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+   +         +  ++  SL+ LK F  P + A ++   +WP+     +    S  
Sbjct: 1   MKTADVTRTSFAVLFLAALVGCSLWILKPFVGPTIWATMVVVATWPLMLRVQAALGGSRA 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               + T+ ++ LF VPL       +     +                    +   M   
Sbjct: 61  AAVTVMTLLLVLLFAVPLALSIATLVENADRIAQTARDLATWRPSREAPAWLLALPMVGP 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L         +        ++     F   F    G  F    L  +  ++     Y  
Sbjct: 121 KLAVAWEQAVAAGLEGLVVRIQPYAGGFTRWFVGEIG-DFGSVALQFVLTVVIAAVMYAQ 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G     Q+ +    L          +    IR   LG+ + A+ + ++ G    LAGVP 
Sbjct: 180 GEVFGAQVRAFAGRLAGERGVGAVTLAADAIRGVALGVGVTAVVQAVLGGVGLALAGVPL 239

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L  +  ++ +   GA       + ++L  G++     L +W AI   + D  LRP L
Sbjct: 240 AGLLTALMFMLCIAQIGALPVLLPAAGWVLYGGDVGWGVFLLVWSAIVGTL-DNFLRPVL 298

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +     LP L  F G++GG+   GL+G+F+GPV++A+   + +  I  
Sbjct: 299 IRLGADLPLLLIFAGVIGGLLAFGLVGIFVGPVVLAVGFTLLESWIGE 346


>gi|291619296|ref|YP_003522038.1| YhhT [Pantoea ananatis LMG 20103]
 gi|291154326|gb|ADD78910.1| YhhT [Pantoea ananatis LMG 20103]
 gi|327395624|dbj|BAK13046.1| UPF0118 inner membrane protein YhhT [Pantoea ananatis AJ13355]
          Length = 351

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 118/344 (34%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +++  +    +++  ++ IIL  +        P+L A        P+ +  + +      
Sbjct: 4   LQQEKIGQNILIKLAMLVIILAGIRAASDILVPLLLAAFFAIVLNPLVTILMRR-GLRRG 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +    +  + ++    L      E  +L  ++    +  + V + L+       ++
Sbjct: 63  LAITLVITVIFIVILLLGAILASSM-SEFSDLYPQLRTIMEKKMAVVQHLAASIHLNIST 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   +                     + +   AS     F     + + +I+ + F   +
Sbjct: 122 DALVQRFD-----------------PNTVMNLASVALSGFSGAMTNTVLLILTVVFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  ++ +    + P           K +       T+I++  G+ +    +L  V  
Sbjct: 165 VHHLPYKMRNSF--VNPKIRIAGLHKALKGVTHYLALKTLISLITGIAVWLTLYLLDVKF 222

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  I+  IP   PI       +  L+  ++F+A  +         +    L P 
Sbjct: 223 ALLWGVVAFILNFIPNIGPIIAGIPPFLQALLLNSVFDAAMVAALFTAIHMVFGNMLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 283 IMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTSITKILME 326


>gi|157149065|ref|YP_001456384.1| hypothetical protein CKO_04904 [Citrobacter koseri ATCC BAA-895]
 gi|157086270|gb|ABV15948.1| hypothetical protein CKO_04904 [Citrobacter koseri ATCC BAA-895]
          Length = 349

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  L+        +L AL       P+ + FI +          +A   
Sbjct: 13  ILLKLASLVVILAGLHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVNRP-----VAITL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E V+ +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALIGVLAASINEFVAMLPKYNKELTRKVLHLQEMLPFLNLHMSPERLLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   L F   +       L 
Sbjct: 128 IDSDKLMTFTTTLMTGLSGAMASVVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L  +   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMDIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   I+   L P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMIIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|110635434|ref|YP_675642.1| hypothetical protein Meso_3105 [Mesorhizobium sp. BNC1]
 gi|110286418|gb|ABG64477.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 374

 Score =  107 bits (268), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 111/344 (32%), Gaps = 16/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + + + +  LY ++   APV  A+++G    P+     ++ +   +  A +A +
Sbjct: 30  QASAIGLAIAVAIAGLYAMRFLAAPVSLAIVVGLMLSPVAQRLENR-KLPPSLSAAVAVL 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      ++ +          +             + + L  I          T   +
Sbjct: 89  IFIFSVGFLVVAVAAPLTSWAGRVPEIWRELQLQLTNLSQPLDTIRSIREEIRNVTGESN 148

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S++  S           +   A  F                  FF      +    L
Sbjct: 149 VTVSVEDGSAMESVALLAPAVIAQALIFLAS-------------LYFFIATRNDTRLTVL 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L       I R V +++ +  L +TII I  G  +G + WL  VPS    G + 
Sbjct: 196 RLCSGRLLRWRVAHIFRDVEELVSNYLLAITIINICLGFAVGISLWLIDVPSAPLWGAMA 255

Query: 249 AIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  I    PI+     + +      +I+ +    L   +   I  + + P ++G  + 
Sbjct: 256 GLLNFIVYIGPITMAVILLGVGFASFDSIWGSISPMLIYLLINGIEAQFVTPSVIGRRMT 315

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L     F  +   +   G +G F+    + +   + +  +   +
Sbjct: 316 LNPFLVFLAITFWLWLWGPIGGFVAVPALLVFFAVARNILPGFE 359


>gi|123441926|ref|YP_001005909.1| putative transport protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122088887|emb|CAL11694.1| putative membrane protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 353

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 104/343 (30%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      K +   T   V+   
Sbjct: 12  RLVAMLAMLVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKLLE-KIKIPRTLAIVLLVT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L  +    L        + L     +  +    +  +           ++      
Sbjct: 71  IIVLLMALLFSRLGSSLNEFARSLPQYRGMMLEKMRDLQEFAMRFNIEFSVDDIMKHVDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S   +++ + F   +   +  ++
Sbjct: 131 ------------------SMAMNFITRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  P     I R     +    +  TII+I  G+V+       GV      G++ 
Sbjct: 173 QLMFDN--PEQGNAILRRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 231 FVLNYIPNIGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  +  + +    K
Sbjct: 291 STLVVFLSLIFWGWLLGPIGMLLSVPLTIIAKIALELTPAGYK 333


>gi|331698035|ref|YP_004334274.1| hypothetical protein Psed_4259 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952724|gb|AEA26421.1| protein of unknown function UPF0118 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 405

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 99/317 (31%), Gaps = 21/317 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     PV  AL++     P++    ++      + A +     +   +V +       +
Sbjct: 52  IAWLIGPVFLALVLVIALAPVHGRLRNRGW--PGWAATLVLALSVYAVVVSIALGI---I 106

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + + +L + +         +    S               L+            + +  +
Sbjct: 107 VSIGQLATTLPQYAAQSRDLVSSAS-------------STLTRFGVSPEELRKVVDSLDL 153

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +              ++IF++  L F   +  ++ +++  +   +         R 
Sbjct: 154 GKLVQVVGSVLADVAGLASNLIFLLTLLLFLTIENVTVPKRVGRIA--VDRPLVAGALRS 211

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
                R   L  T+  +    +   A ++ G+P  V  GV+  +   IP    I      
Sbjct: 212 FAHNTRQYLLVSTVFGLIVAALDTIALFVMGIPLAVTWGVLAFVTNYIPNVGFIIGLVPP 271

Query: 267 IYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L +  G       +     +  F++   L+P  VG  + L    TF  LV     +G 
Sbjct: 272 ALLALLTGGPGLMVAVIAVYGVLNFVIQSLLQPRFVGDAVGLSVTVTFLSLVFWAWLLGP 331

Query: 326 LGLFIGPVLMALIAVIW 342
           LG  +   L  L   + 
Sbjct: 332 LGAVLAIPLTLLAKALL 348


>gi|146313513|ref|YP_001178587.1| hypothetical protein Ent638_3881 [Enterobacter sp. 638]
 gi|145320389|gb|ABP62536.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 349

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLACLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGIKRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E  + +   N+        L ++   +       + L  
Sbjct: 68  VVLVMLIVLTALVGVLAASLSEFSTMLPKYNKELTRKALELQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI++       G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSEKIMTFATTLMTGLSGAMASILLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +  GV+  
Sbjct: 188 RAL----------------KGVSKYLALKTLLSLWTGVIVWLGLTLMGVQFALMWGVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     +S     I   +   I+    +     +   I+   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVLSAVPPMIQAFLFNGIYECMLVGALFLVVHMILGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|259503909|ref|ZP_05746811.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168120|gb|EEW52615.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 380

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 108/337 (32%), Gaps = 10/337 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI----SKKEESSTFLAVIATVSVMCL 73
           FI    L F+   F P++ +  + +   PI    +     +   +    +++  + ++ +
Sbjct: 39  FIFQPFLTFISVVFVPLILSGFLYYMLNPILKLLLKIRLGRFRLNRAVASLLLVLLLILI 98

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               L  L    + E+  LV+ +         +          +  S L    L+     
Sbjct: 99  IAGGLAMLIPPVVKEITSLVTHLPQTASGLQRLLN------DTIQHSPLKKVDLTTYYRQ 152

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  +            +  +  I + + LF+  +DG  +   +     
Sbjct: 153 FDHQLANYAQLVLKGLSSRIGDVINAVTNITVVTITVPVMLFYMLKDGSKLGPSIQKWLS 212

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +   + S   G  I  +   +     Y L   P  + LG++  +  +
Sbjct: 213 PHHAKEVDQLLGKMNDTLSSYIAGQVIECLFVAVFTSLGYLLIHQPLALVLGIVAGLCNI 272

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P    A ++++ +         + +   +   I    + P ++G  +++  L   
Sbjct: 273 IPYIGPYIGIAPALFVSLTMAPQKLILVIIVVIVVQQIDGNVIYPNIIGKTLQIHPLTII 332

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+      G+ G+ +     A++  I +      +
Sbjct: 333 LLLLAAGHIAGIAGMILCIPFYAVLKTIAEYFFDIYR 369


>gi|255656022|ref|ZP_05401431.1| hypothetical protein CdifQCD-2_10054 [Clostridium difficile
           QCD-23m63]
 gi|296450549|ref|ZP_06892303.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296879329|ref|ZP_06903324.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296260624|gb|EFH07465.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296429872|gb|EFH15724.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 361

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 102/323 (31%), Gaps = 4/323 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +              +   +    H+ H     +   +          
Sbjct: 102 NRLINEMPMYTDYINSFIEK---NMSNIDFLKTLIPHIQHSLDNVLKEASNFIGKISKNF 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 159 LIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTTRNKADSIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    +     + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
           F+   + A++     + I    +
Sbjct: 339 FLSVPIAAVVKTYVDKYIDNRLQ 361


>gi|254422704|ref|ZP_05036422.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190193|gb|EDX85157.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 353

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 108/336 (32%), Gaps = 17/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ ++  +  +  L + +       +A I+ F           ++         I   
Sbjct: 17  RYLLLFVCGWAAVALLEYFETVIIIFTAATILAFLLSYPVRWL--RRFLPHGVAVSIVFA 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  +    + + + L+  +        P    L                 +
Sbjct: 75  IALMVIGGLITTIALVVLSQGQPLIDNLSDFLTSLTPRIEALEQFLQRRNLPVDLQSLGA 134

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +   +             +           ++  L  + + +   F   DG  +   L
Sbjct: 135 QFRDQAV------------GLLGVGVNLLQGLVNNFLHSVLIAVVTLFMLFDGARLWYFL 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       ++I+  V       F G  +++I  G+     + L GVP    L VI 
Sbjct: 183 IKRLPL---DQQRRITETVQDSFLGFFWGRLLLSIFFGVSTFVVFLLLGVPYAPTLAVIA 239

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IPG       ++    L+  +I  AT   +   +   + +  L P ++   + + 
Sbjct: 240 GVFDLIPGIGATLGVSLISLFLLSQSILLATQSIVICVVLQQVEENLLLPRIMKDSLNIN 299

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +  FF L+ G R  G+LG+F+   + + I  + + 
Sbjct: 300 PVVMFFALIVGARIAGVLGIFLSIPVASTIINLLEI 335


>gi|300087711|ref|YP_003758233.1| hypothetical protein Dehly_0601 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527444|gb|ADJ25912.1| protein of unknown function UPF0118 [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 361

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 105/337 (31%), Gaps = 4/337 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +++  + V +Y L+    P    L+  +   P+             F      + V
Sbjct: 1   MVFLVVLIALSVLIYSLRSVLLPFFIGLLAAYILHPLILLMERYITLPKPFERHKRLIFV 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + +V L  +       M  L + +   + +   +   +S    G+  S          
Sbjct: 61  IVVMLVLLALIVAVASYMMATLFNTISELSDNASQIFTSVSAYFTGLLESIRTQFPPDVQ 120

Query: 131 QSLKILSETFLK--TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            S+       L    N        +       + +      + + LF+  +D   +   L
Sbjct: 121 ASIDSFVAEALAEIGNAAQGFLSRSVTVIPTTVGFIFGFAALPMFLFYMLKDWERLRDSL 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGV 246
                 L   + + I  I+  V+        ++    G +      +  V     + L  
Sbjct: 181 QRGLPGLAAVHTRNILNIIGNVLGRYIRAQLLLGSIVGSLTFIGLLIMNVNFGLALLLAT 240

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +  M+P   P      +  +++         + L   +   + +  L P + G  + 
Sbjct: 241 VAGLFEMVPTIGPWISGIFAAVIILATYPDLVIWVILLFLLIQGLENNLLVPRVQGQMLH 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +        LV G    G+ G+ +   L A I  I++
Sbjct: 301 IHPAIALLLLVLGAYLAGIWGILLAVPLAATIVKIFQ 337


>gi|254787526|ref|YP_003074955.1| transporter [Teredinibacter turnerae T7901]
 gi|237683517|gb|ACR10781.1| transport protein [Teredinibacter turnerae T7901]
          Length = 343

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 109/334 (32%), Gaps = 13/334 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + + ++    + ++   +Y  +    P++ ++       PI +   ++     +  +V
Sbjct: 1   MKDLRWMLSCAFLILVCFVVYITRSLVLPIIVSMFFALLLNPIVNYL-NRFAVPRSLSSV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  ++++    +    L         + V +V   ++        ++    G    + + 
Sbjct: 60  LTVLTLVIALGLTFSLLVSPM----DKWVKQVSKISEDISQKIDEVAKPLTGEAEQKWYQ 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 + +    ++ +    +     F        L   +      +  FF        
Sbjct: 116 LSKDRGEPMSQKIKSQVSVAFMQVATNFTPVVLFQALTVIV------LTFFFLTHGQSLY 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + +L        +  I + +   +    L +++I  G GL +  A +L GV   +  
Sbjct: 170 RNVVATLPTFRHRRIFVTIGKSIQSDVSYYVLIISVINTGLGLSVAGALYLLGVEDALLW 229

Query: 245 GVITAIMAMIPGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G    I   +P      +      +  +  G+ + A    +       I  + + P ++G
Sbjct: 230 GAFAGIFNFVPYLGLFVVGVIITGVGFIQFGDNWQALYPVMAFLFLNGIESQVVTPTVLG 289

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
              ++  L     L      +G++G+ +   ++ 
Sbjct: 290 QRFQINPLIVILWLFVFGWLLGVVGMILAVPILV 323


>gi|159899320|ref|YP_001545567.1| hypothetical protein Haur_2801 [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159892359|gb|ABX05439.1| protein of unknown function UPF0118 [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 402

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 110/350 (31%), Gaps = 12/350 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +    ++V ++         L +L+I     P     I +   S      +   
Sbjct: 6   RVTATILFTLALVVLMWMFSDAVLLFLVSLVIASAVRPFAQRLIDR-GMSRGAAYGLVYF 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +    F      +    + E+             G  +  + + +       + W + ++
Sbjct: 65  ASFVFFGGLFAVISRGLLSEL----------QLAGDQLLNFYTRVTLTWPQGQEWQQTIA 114

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                +     +        +      FG    D+   ++ ++    ++  D     +  
Sbjct: 115 SELPSRQALLDYFAGTDGTAVINSIVGFGSGVFDFLAQLVILLSLSTYWAVDQNRFERLW 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL         + I R V   + +        +   G+ LG  + L G+P    L +  
Sbjct: 175 LSLISAKHRQRARTIWRAVELEVGAYIRSEVAQSSLAGISLGIIFELIGLPYPTLLALWI 234

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           AI  ++P    +     ++ + +  NI  A    L        +   + P L G   ++ 
Sbjct: 235 AIAWLVPWVGVLLALIPAVAVGLLVNIPVALLAGLSTIAVFAFLQIWVEPRLYG-ANRVS 293

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +     L+   +  G+LG+ I P L A I ++ +E   +    ++    
Sbjct: 294 PVLVVLILMVMAQAFGILGMLIAPPLAATIQILGRELWFSKSPEEQLADD 343


>gi|145631416|ref|ZP_01787186.1| hypothetical protein CGSHi22421_06177 [Haemophilus influenzae
           R3021]
 gi|144982953|gb|EDJ90462.1| hypothetical protein CGSHi22421_06177 [Haemophilus influenzae
           R3021]
          Length = 348

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 115/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     I     LS         
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKILLSQRISDLTALSQRF------ 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 113 -----NLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S    +     ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISSTPHDVAKE--ERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|325280258|ref|YP_004252800.1| hypothetical protein Odosp_1595 [Odoribacter splanchnicus DSM
           20712]
 gi|324312067|gb|ADY32620.1| protein of unknown function UPF0118 [Odoribacter splanchnicus DSM
           20712]
          Length = 349

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 132/344 (38%), Gaps = 20/344 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + +V  +    F   +L A  I           I KK    + +A +  +  + +F
Sbjct: 15  IILVMGVVIFFKATPFLGGLLGAATIYILLRNQMLYLIEKKHMKKSLMATLMLIETILIF 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++P+  + +  +                     + ++  P  +         L   ++  
Sbjct: 75  LIPISLVVWLLIS------------------KLQAINLDPKSLMEPIGHVSKLVQEKTGY 116

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +         +  +P+          ++ ++++ +I+ L+F    G  +   +  +   
Sbjct: 117 DVLSKGNIGALLSVLPKVGQILMGSISNFIINVLVLILVLYFMLVGGRKMEDYIIDILPF 176

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + +      V++S  +G+ ++AI +G +    Y++ G P  +  GV++    +I
Sbjct: 177 NQRNK-RDVLHEFHMVVKSNAIGVPLLAIIQGGIAMLGYYIFGAPEVILWGVVSCFATVI 235

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     I +  +++Y+   G+ + A  L ++  + +  VD  +R  L         L T 
Sbjct: 236 PVIGVAIVWIPLALYIGATGHWWTALGLSVYCIVIVANVDNLIRSVLQRKMADTHPLITI 295

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           FG+V G+   G +G+  GP+L+++  +  +       E  +   
Sbjct: 296 FGVVIGLSLFGFMGIIFGPLLLSIFVLCVQIFKAEYLEEPQGQK 339


>gi|91224927|ref|ZP_01260186.1| putative permease protein [Vibrio alginolyticus 12G01]
 gi|91190173|gb|EAS76443.1| putative permease protein [Vibrio alginolyticus 12G01]
          Length = 356

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 102/323 (31%), Gaps = 19/323 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            LYF K    P++ +  I     P  +    K          I  V  +   +   +   
Sbjct: 25  GLYFAKPILLPIVLSTFISLLCSPFINYLEDKGLPR-----AITVVLTLSFLVGASIIGL 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  K+  S++    ++       ++                     L I ++  + 
Sbjct: 80  AAMSEPAKQWWSELPSIVKNVSQEVSEVTK-----------ASADHLNTPLNIANDMSMD 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EVGNNTVFSLVKTLATTTPTILTQAMIVLFMVYFMLNHGRSLFRKSVSYLHGFAKQRQAI 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ + + K +      +T++  G GL +G+ +++ G+      G    +M   P   P+ 
Sbjct: 189 ELVKALQKDLSRYIGTITLVNAGLGLSVGAVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 262 FTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++      ++     +     +   I  + + P L+G    L  L  F  LV  
Sbjct: 249 SMVSFGFVAYLQLESVSFMLTVVSIYLLLNLIESQFVTPTLLGKRFNLNPLVIFVWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G +GL IG  L+  I ++ 
Sbjct: 309 GWLWGGMGLLIGVPLLVCINILV 331


>gi|15615171|ref|NP_243474.1| hypothetical protein BH2608 [Bacillus halodurans C-125]
 gi|10175229|dbj|BAB06327.1| BH2608 [Bacillus halodurans C-125]
          Length = 352

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 109/334 (32%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++  + + I++++ YF+     P+++ALI      P       K +    F  ++ 
Sbjct: 6   TKRNVLIALTILILVIAAYFILPVSLPLVAALITAMILSPAVHYLHVKTKLKRNFSVMVV 65

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               +CL  +   ++    + +   +V  +                     +        
Sbjct: 66  FTLFVCLIGLCGYYVVTTVITQGVTIVENIPQYINDINRAWLLFQRDLEHRYEDLPPEFV 125

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 +        +           +        Y ++II  +IALF F  +   + +
Sbjct: 126 YEINLQVTDTLNKLRQDLADRDWIGDITSLVTSVPGYLVTIIVYLIALFLFMLELPRLKE 185

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ S            +S  +  V+        +++I   +V      L      + +  
Sbjct: 186 KVYSYLSEKTQDKVSFMSSRLSYVVSGFIKAQFLVSIIIFVVSLVGLLLIVPEYALLMAF 245

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  IP    I+         +           L  A  L I+ +T+ P ++G  I 
Sbjct: 246 VIWIIDFIPIIGSIAILGPWALFQLIAGNVAVGTQLLILAAILLIIRRTVEPKVMGQHIG 305

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           L  L T   +  G+   G++G  +GP+++     
Sbjct: 306 LSPLATLIAMYIGLMLFGVVGFIVGPLIVIAFQS 339


>gi|297193201|ref|ZP_06910599.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197720471|gb|EDY64379.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 366

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 102/341 (29%), Gaps = 19/341 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +  + +  +   +    PVL AL+      P+Y   + + +   +  A +  V+
Sbjct: 22  ALLVTGVAAVGIWLVVRFQTAVTPVLLALLGTALLGPLYRRLL-RMKVQQSLAAGLTCVA 80

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    +  +    +    ++V+ +  A                              
Sbjct: 81  VVAVVGGAVYIVVSALIETGDQIVASLRQAASDLSR-----------------HFGAAGT 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +   L                 +  +     +  ++ +FFF RD       L 
Sbjct: 124 SLDDLASNARELLGKFGGTAASGVISGLSVVSEMIAIAVLALLLIFFFLRDSDRAVGALR 183

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+         + I+R   + +     G T IA+ + L +     +  VP  V LG +  
Sbjct: 184 SVAPGDGGELVEAIARRAFRGVEGFMRGTTFIALIDALCITLGLLVLRVPGAVGLGALVF 243

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + A IP     IS     +  L       A            +    L+P +    + + 
Sbjct: 244 VGAYIPYLGAFISGAVAVLVALADRGFVIALWALGVVLAVQVLEGHVLQPMIQSRTVHMH 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                  +  G    G+LG+ +   + A +    +E     
Sbjct: 304 PAVVLLAITAGASLAGVLGMLLAVPVTAAVFGAVRELRARY 344


>gi|291513866|emb|CBK63076.1| Predicted permease [Alistipes shahii WAL 8301]
          Length = 350

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 127/344 (36%), Gaps = 20/344 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +I  + L     L  F   +L A+ I             ++    +  A +     +
Sbjct: 13  LFVLIAGLGLTIFAELTPFLGGLLGAVTIYVLLRRQMWFLSERRRWRRSLAASLLLGEAI 72

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             F+VP+  + +  + +++ +             V   +    G    SE          
Sbjct: 73  FFFLVPISLIVWMVVDKIQGVALDPQSVITPVRHVAGLIQQKTGYDLWSESN-------- 124

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                       + + ++PR         +++ ++++ ++  L+F    G  +      +
Sbjct: 125 ----------LQSVLGYLPRAGQWLVGGIVNFAVNLVVLLFVLYFMLIGGLRMETYCREI 174

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A  + + R +  ++RS  + + ++A+ +G+V    Y   GVP  +  GV+T   
Sbjct: 175 LPFDRRA-ARSVMREIHMIVRSNAIVIPLLAVSQGVVAYVGYLAFGVPEPLFWGVLTCFA 233

Query: 252 AMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            ++P     + +  ++ Y+ + GN      L ++G + +  VD  +R  +      +  L
Sbjct: 234 TILPIVGTALVWLPLAAYMSLDGNWGQGVGLVMYGTLVVTQVDNLVRMVMQKKMADVHPL 293

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            T FG+  G+   G +G+  GP+++A+             +   
Sbjct: 294 ITIFGVFIGLSLFGFMGVIFGPLMLAMFVFCVNVFKRRYLDGLP 337


>gi|285019744|ref|YP_003377455.1| hypothetical protein XALc_2984 [Xanthomonas albilineans GPE PC73]
 gi|283474962|emb|CBA17461.1| hypothetical protein XALc_2984 [Xanthomonas albilineans]
          Length = 353

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 105/350 (30%), Gaps = 19/350 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  M +  + +  + L      V  A+++G     + S    +          +  +S
Sbjct: 18  RVLVVMALGGLALLAWQLSELLLIVFGAIVVGVLLHGLASVLCKRLPVPEWAALALVILS 77

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++      +L        ++    + +  A        +     P      E        
Sbjct: 78  LLLALSAIVLLFGSEVAAQIDAFRTTLPAAWNKFHAWLQSGPLGPQIDRIPEQ------- 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         NG   +   A    M       + + M +   +         Q L 
Sbjct: 131 ------------LRNGASTVAAHAGAIVMSAGGGVTNAVLMTVGGIYLAAQPRLYRQGLL 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                 + +R+   G  +     G + G   WL  VP  + +G++TA
Sbjct: 179 RLLPRDQRGVADAALGASGQALRAWLAGQLLAMAVIGTLTGVGLWLLHVPVALGIGLLTA 238

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  IP   PI+    +I L    +   A    L   +   +    L+P +    + LP 
Sbjct: 239 LLDFIPIVGPIAAAVPAILLGFTVSPQVALGALLLFVVLQQLEGHLLQPLIQARAVDLPP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               F L G    +G +G+ +   L  +  V+ K   +       + + +
Sbjct: 299 ALLLFSLFGIGMLLGPMGVVLAAPLTVVTFVLIKRLYVQHALGDAEEAES 348


>gi|288555382|ref|YP_003427317.1| putative autoinducer export protein AI-2E [Bacillus pseudofirmus
           OF4]
 gi|288546542|gb|ADC50425.1| putative autoinducer export protein AI-2E [Bacillus pseudofirmus
           OF4]
          Length = 354

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 103/300 (34%), Gaps = 11/300 (3%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   P+            +   ++  ++++    + L+F     + +++  ++ +    
Sbjct: 54  TYLLHPLVEGLHEH-GLPRSLSVLLVFLALLVTLGLVLMFGVPLLIEQVQHAMTVLPQQI 112

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                +              +   + L  P  + I   +                  +  
Sbjct: 113 TEIEKMI----------IQIQTQARALPSPIRVHINEWSTQAGVLGAKALDQIEVLALWL 162

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           +    S++ +   +F+F +D   I +    L    +    K+ ++ V     S   G  +
Sbjct: 163 IQSIFSLMVVPFLVFYFLKDFDLIEKVSWYLTPRKWRPGLKRYAKDVDHSFGSYIRGQLL 222

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +A+   ++    +WL GVP  + LGV      MIP          +I + +  +   A  
Sbjct: 223 VALAVTIISSLGFWLIGVPYPILLGVFMGATEMIPYFGAYIGAVPAIIIALFESWQLALI 282

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +  I   I    L P +VG  + L  +     LV G+   G++GL +    +A++ V
Sbjct: 283 TAGFILILQQIEGNILSPVIVGKTLHLHPILIILALVIGIEAGGVIGLLLAVPALAILKV 342


>gi|145636393|ref|ZP_01792062.1| hypothetical protein CGSHiHH_07946 [Haemophilus influenzae PittHH]
 gi|145270558|gb|EDK10492.1| hypothetical protein CGSHiHH_07946 [Haemophilus influenzae PittHH]
          Length = 348

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 115/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S       A  ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPYDAAKEERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|29828149|ref|NP_822783.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29605251|dbj|BAC69318.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 412

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/335 (11%), Positives = 101/335 (30%), Gaps = 15/335 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + +++  ++L  L+     +  AL++     P       +          ++ V
Sbjct: 73  RLLVVGVAVYVGFMTLGRLQLVAVALFLALVVTAVLRPPAGLLARRL--PRAAAVAVSVV 130

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  L  +      E  +L  +                                 
Sbjct: 131 GSLVVALGLLALVGGLVAGEWDQLGREFGGGLGRIERWLE------------GPPFHVDP 178

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S      +   +     +   A       ++   + +  +    FF   G +     
Sbjct: 179 AVMSDLQGKVSSFVSEHRSQLISSALSGAGRVVEVLTAAVLALFCSIFFLHSGDNYWHWF 238

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +         W +  R   +       G+ I+A    +++G A +   VP  + L ++ 
Sbjct: 239 LARLPEGAREPWGRAGRAAWRTFAGYTRGIIIVAASNAVLVGIALFALQVPLALPLTLLE 298

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A IP    PI+    ++  L       A  +     +   I    L P ++   ++L
Sbjct: 299 FFAAFIPLVGSPIALAVATVVALASRGPVVAIAVLALIVVVGQIEGHLLHPLVMSWAVRL 358

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +     ++ G    G++G  +   ++++   + 
Sbjct: 359 HPVVVALSVIAGSILAGVIGAVVAVPMVSVAWSVL 393


>gi|256423124|ref|YP_003123777.1| hypothetical protein Cpin_4116 [Chitinophaga pinensis DSM 2588]
 gi|256038032|gb|ACU61576.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 360

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 101/319 (31%), Gaps = 20/319 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K    P   A +I     P+ +     +      +++   ++ + L  +   +     + 
Sbjct: 33  KEILVPFAFAGLIAILLNPLCNRLERLRIPKVWAISLSLLLAALVLAGLF--YFLSAQIS 90

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +  EL+  +   +Q  +   +    +  G+   +          + +             
Sbjct: 91  QFGELIPTLKTRSQELMGELQQWVALKLGISMEKQTDMLHKLTDNGQ------------- 137

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
              ++                 + +  F        +   +          + + + +  
Sbjct: 138 ---QYLGHTLGSIFGVLGVFFLLPVYTFLLLLYKNQLVNFIYESFGSEHKEHVQDVLQST 194

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT--AV 265
              I+S   G+ I      ++   A  + GV   + LG I AI+ +IP    +      V
Sbjct: 195 KGAIQSYIAGLLIETAIIAVLNSIALLILGVKYAILLGTIGAILNLIPYIGGLIAIALPV 254

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I  +   N      +     +  FI +  + P +V   + +  L +   ++ G    G+
Sbjct: 255 MIATVTNDNFTTPLLIVGVYLLIQFIDNHLIVPKVVASKVSINALISIVVVLMGGALWGV 314

Query: 326 LGLFIGPVLMALIAVIWKE 344
            G+F+    +A++ +I+  
Sbjct: 315 SGMFLSIPFVAILKIIFDH 333


>gi|261369000|ref|ZP_05981883.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
 gi|282568868|gb|EFB74403.1| putative membrane protein [Subdoligranulum variabile DSM 15176]
          Length = 374

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 103/344 (29%), Gaps = 11/344 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI----------SKKEESSTFLAVIATVS 69
           +   +        P+     + +    + S                          A V 
Sbjct: 26  LFGGIRLFFSLLVPLFIGCGVAYVLNILVSRLETLPPLRNPRSRLYPARRALSITGALVI 85

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHLS 128
           ++ +  + +L +    +   + ++  V  A    +     L+ D+P           +  
Sbjct: 86  IVVVVALLILLIIPQLVDAFRVMLVNVPPAVNEFLAWLDSLNIDMPQLESWLRSLNLNWP 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T   +N         S  G I +   +++IF +  L    R G       
Sbjct: 146 DLLQKATTYLTSGVSNVFSSAFGLLSSLGGIVMQVVIAVIFALYLLAGKERLGRQFHALA 205

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D+            +           F+G    AI  G++      L  +P    +G + 
Sbjct: 206 DTYLPASVCDRLWYVLATAHDTFTKFFVGQFTEAIIIGVLCTLGMLLFRLPYAPMIGTLV 265

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
              A++P         +  ++++  N   A    ++ A+   +    + P +VG  I LP
Sbjct: 266 GATALLPVVGAYLGAGIGAFMILTVNPLQAIGFLVFIAVLQQLEGNLIYPRVVGTSIGLP 325

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +     +  G    G+ G+ +   + A +  + +  +   ++ 
Sbjct: 326 GIWVLTAVTLGGGIGGIAGMLLAVPVTATVYRLIRADVRHRRDQ 369


>gi|90407444|ref|ZP_01215628.1| permease PerM, putative [Psychromonas sp. CNPT3]
 gi|90311475|gb|EAS39576.1| permease PerM, putative [Psychromonas sp. CNPT3]
          Length = 353

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 107/349 (30%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P   + ++ +  +  ++YF  G   P+  AL++ +         + + + S   
Sbjct: 10  KSRFSDPHLGVLFVSLLGLFFTIYFFGGILTPLFVALVLSYLLDWPVMHLM-RLKISRGL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I     M + I   + +    + +   L+  +             L      +  + 
Sbjct: 69  ATLIVMSGFMSIMIFMFIAVVPTVIKQGISLLHDLPAMFNQSQIFVLTLPSRYPDLIDAN 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                + + ++  + S  FL ++    +   A           +  I + + + F  +D 
Sbjct: 129 TLAGLMENLRNYVLESGGFLLSHSFSSLLNLA--------ALIIYAILVPLMMVFMLKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +Q+             ++SR +   I +   G  I  I  G      +    +   
Sbjct: 181 NILIKQMLRFLPT-HHKLIDQVSREMNMQIMNYIRGKVIEIIIVGFFTYLVFLFLDLRYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           V L V+     +IP    +  T       L   G       L L   I   +    + P 
Sbjct: 240 VLLAVLVGFSVLIPYIGAVVVTVPVAVVALFQWGLTPEFAYLMLAYGIVQALDGNLVVPI 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  L+  +       
Sbjct: 300 LFADAVNLHPVMIIIAVLIFGGLWGFWGVFFAIPLATLVKALLNAFPEK 348


>gi|91977182|ref|YP_569841.1| hypothetical protein RPD_2711 [Rhodopseudomonas palustris BisB5]
 gi|91683638|gb|ABE39940.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB5]
          Length = 395

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 95/346 (27%), Gaps = 4/346 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L + +   G    + + ++ G     +                 +    + 
Sbjct: 34  ISTVAFGALLYAAWHFAGTLFLIFAGILFGVFLNALTELAGKVVGGPHGLRLGLVCFLLT 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL----WTKHL 127
            +F+   +        +   L   +     +              M  S       T   
Sbjct: 94  AMFVGIAVLGGSTIGQQATALSGTIKTQIVNVKTFLERQGVDTSFMELSLANAGGPTAET 153

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             P   + L       +G   I     +  +  +    +   ++     F        + 
Sbjct: 154 QAPPQPRNLPSAGELASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPDVYRRG 213

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L+ +    +     +I     ++++   L   I       V  +   + G+P    LG+ 
Sbjct: 214 LERVAPLRYRPQASRIVNDTGEMLKRWLLAQLITMTAVFAVTATGLSMIGIPGAFILGIQ 273

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++A IP    I    + +   I    F   C F        +    L P +    I +
Sbjct: 274 AGLLAFIPTVGAILGGLIIVLAAIASGWFAVLCAFALFLGVHALESYILTPLIQRQAIDI 333

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P    F   +      GL GL +   LMA+  V+          N+
Sbjct: 334 PPATLFAMQILLGIVFGLWGLAMALPLMAIGKVVINHLRAEGPANE 379


>gi|238762175|ref|ZP_04623147.1| AI-2 transport protein tqsA [Yersinia kristensenii ATCC 33638]
 gi|238699522|gb|EEP92267.1| AI-2 transport protein tqsA [Yersinia kristensenii ATCC 33638]
          Length = 353

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 104/343 (30%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      K +   T   ++   
Sbjct: 12  RLVAMLAMLVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKLLE-KIKIPRTLAIILLVT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L  +    L        + L     +  +    +  +           ++      
Sbjct: 71  IIVLLMALLFSRLGSSLNEFARSLPQYRGMMLEKMRELQEFAMRFNIEFSVDDIMNHVDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S   +++ + F   +   +  ++
Sbjct: 131 ------------------SMAMNFVTRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  P     I R     +    +  TII+I  G+V+       GV      G++ 
Sbjct: 173 QLMFDN--PEQGNAILRRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 231 FVLNYIPNIGSVLAAIPPIVQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  +  + +    K
Sbjct: 291 STLVVFLSLIFWGWLLGPIGMLLSVPLTIIAKIALELTPAGYK 333


>gi|75908912|ref|YP_323208.1| hypothetical protein Ava_2700 [Anabaena variabilis ATCC 29413]
 gi|75702637|gb|ABA22313.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 373

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 110/334 (32%), Gaps = 13/334 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  +++L  + + +     V +A+++ F        F  +             +  +
Sbjct: 19  VAILNGWLLLQVVQYFQPLVNVVAAAILLAFVLNYPIQFFQER-GVKRNLAIGSVLLLAV 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +   + L    + ++ ELV+ +      G                    T+ L    
Sbjct: 78  VILVGLGVTLVPLIIEQLNELVNILPYWIDSGGQQIDAFQKWAA--------TQQLPVNL 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S  +       ++ +  +      F    +   ++++  ++   +   +G  +   L   
Sbjct: 130 SGLVTQILERVSSQLQSVTGRILGFAFDTIGVVVNVLLTVVLTIYMVLNGDRLWDGLYQW 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +  ++I R       + F+G   +    GL +  A+    VP  +  G+   + 
Sbjct: 190 FPTHIGSKVRQILRE---DFHNYFIGQATLGAILGLTITLAFVTLRVPLALLFGLAIGLF 246

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++ P G  I  + VS+ +    N +    +         +    + P ++G    L  + 
Sbjct: 247 SLFPFGTGIGISIVSLLVA-LQNFWLGGEVLGVAVAIDQVNSNFIAPRILGNLTGLNPVW 305

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               L+ G +  G+LGL I     + I  I    
Sbjct: 306 VVISLLLGAKLGGVLGLLIAIPTASFIKDIADSW 339


>gi|88808466|ref|ZP_01123976.1| hypothetical protein WH7805_02212 [Synechococcus sp. WH 7805]
 gi|88787454|gb|EAR18611.1| hypothetical protein WH7805_02212 [Synechococcus sp. WH 7805]
          Length = 359

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/340 (10%), Positives = 110/340 (32%), Gaps = 3/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    + I  + L+ L+     + + +++      +  +   +         ++  + + 
Sbjct: 7   LGLAALLISGLLLWSLRDVLIHLFAGVVLAMALCTLVGALRERWSLPRPLALLVCLLGLA 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + +  +      + ++L+ ++  A +    +     +    +   +      +   
Sbjct: 67  SVVAIAVAVILPPFFSQFQQLLLQLPAAARALQQIVTGWLNSASSLVYGQDAQPAFTPSN 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQL 188
               LS     +     +         +  +     + ++F+I           +  +  
Sbjct: 127 LSNGLSGLPSGSALASGVTGSLKGVLGLAGNVGNGLVQLLFVIAVTLMVSIQPMAYREVG 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +    + I     + + S  +G+ I +    ++ G    L GV   VA  ++ 
Sbjct: 187 IQLVPSFYRRRARSILLQCGEALSSWMIGVLISSCCVAVLAGIGLTLLGVKLVVANALLA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P   T   + + +    + A  +     +   +    + P ++   + L 
Sbjct: 247 GLLNVIPNVGPTLSTVFPMSVALVDAPWKALAVLALYVVVQNVESYVITPSVMQHQVNLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T           G LGL +   L  ++ VI +E ++ 
Sbjct: 307 PGLTLTAQFIFTVLFGPLGLLMALPLAVVLQVIIREIVIH 346


>gi|313791669|gb|EFS39787.1| conserved hypothetical protein [Propionibacterium acnes HL110PA1]
 gi|315077482|gb|EFT49542.1| conserved hypothetical protein [Propionibacterium acnes HL053PA2]
 gi|315107201|gb|EFT79177.1| conserved hypothetical protein [Propionibacterium acnes HL030PA1]
 gi|327455112|gb|EGF01767.1| hypothetical protein HMPREF9584_01067 [Propionibacterium acnes
           HL092PA1]
          Length = 385

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 119/352 (33%), Gaps = 15/352 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ +   L+       PV  AL++    WP+ +             + I  +
Sbjct: 41  RMIVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRH-HIHRGIASGICLL 99

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L       +     L+ ++L  + V + +  +               + L  K  +
Sbjct: 100 LLVILVGGVFTLVGAQIALQWRQLGDQSVASFKQALQWLAKSPLHTNEAQLTHLMQKAEA 159

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                +    +              +  G     +   ++  + A FFF  +G  ++++ 
Sbjct: 160 AMAGSQGRIAS-------------TAAAGSQIGRFGAGLVMALFATFFFVYEGDKLAEKS 206

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L      A     ++     + +      I+A  +GL  G    + G    VA+G +T
Sbjct: 207 AVLIPREHRAAILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALT 266

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I+A +P    + +       +L+    F A  + +     + I    L+PFL+G  + +
Sbjct: 267 FILAFVPIVGALTAGVVAVGVVLVTLGFFKAFIMLIVFVAVMQIEGHVLQPFLLGKAVSI 326

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             L    G+  G    G++G      ++A      K        N+   + +
Sbjct: 327 HPLIVLLGIAVGAIISGIVGALFAIPIVAFGVAFIKALNPETPANEVPPNHD 378


>gi|196234438|ref|ZP_03133264.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
 gi|196221494|gb|EDY16038.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
          Length = 572

 Score =  107 bits (267), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 77/295 (26%), Gaps = 6/295 (2%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                     + T+    +    L  +      +  +L   +   + +            
Sbjct: 52  LGCGRGPAVGVVTIISFTVLASVLYVVG----AQAVDLAKSLPGYHDNLQQKVFAPLGKL 107

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              +++   + H + P  +   +           +   A       L    +   + + +
Sbjct: 108 TSAFSAYTRSVHPAKPSDITSEAAQLDLPTSNVNLLSVAKELAGPLLSPIGTAGMVAVYV 167

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            FF  D  S+  +   L  H       +        +        +I    G+ +G   +
Sbjct: 168 IFFLYDRQSLRDRFIHLVSHGRLHLATQALDDAADRVSRYLAAQLLINATYGIPVGVGLY 227

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--TCLFLWGAIELFIV 292
             G+P+    GV+  I+  +P        A    L    +   A    +           
Sbjct: 228 FIGIPNAPLWGVLAIILRFLPYLGIWIVAAFPFVLSFAISPGWAQPVEVVALFIGVELFT 287

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              + P+L G    L         +      G  GL +   L   + V+ K    
Sbjct: 288 ANVMEPWLYGASTGLSASAIVVSAIFWTWLWGAGGLLLATPLTVCLVVMGKHLPA 342


>gi|258516348|ref|YP_003192570.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257780053|gb|ACV63947.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 362

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 115/324 (35%), Gaps = 2/324 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           ++ + ++     P + A+I+     P+ S F  +   S       A V ++      L+ 
Sbjct: 33  VLIIKYILTMLLPFILAVIVSVLLEPLVSFFQLRMRFSRGMAVTSAMVIIIGGAGTLLVL 92

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + E+ EL + + L  ++G  +   L D    ++ +   T       S+  L++  
Sbjct: 93  LVLQLVAELIELSASLDLYMRNGRMIMESLVDRGINIYGNLPPTAVNYLQTSVASLADN- 151

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +               L  I  ++A FF  +D  +I +         +    
Sbjct: 152 -LKLFASKLINAFLHMVYGIPGIILVGIVSLLAAFFISKDRDTIFRLWRRCVPAPWGERS 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +SR V +   +      I+     +   +  ++ G+   + +G+      +IP   P 
Sbjct: 211 IDVSREVSRAFMAYIRSQLILVTITMVQCIAGLYIIGIDYALTIGLTVGFFDLIPVLGPG 270

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           S     I   +    +            + +V + L   +V   + L  L T   +  G+
Sbjct: 271 SVFIPWIAWSLFTGDYGLGIKLSILFALILLVRQLLEAKIVSANLGLHPLATLLAIYVGL 330

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
           +  G+LGL +GP+ +  +   +K 
Sbjct: 331 KVFGVLGLILGPMALIALQAGYKA 354


>gi|226365345|ref|YP_002783128.1| hypothetical protein ROP_59360 [Rhodococcus opacus B4]
 gi|226243835|dbj|BAH54183.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 403

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 102/337 (30%), Gaps = 30/337 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALII----------------GFTSWPIYSSFISK 54
           ++    M++   SL  +      +L   II                    WP   +   +
Sbjct: 22  LIGLGAMWLAKWSLVLVAIALGALLFGWIIEKLWVIVLPVLLAVVVCTVLWPPTRAMTKR 81

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +       A    V  + +    +  +    + +  EL +K                   
Sbjct: 82  RIP-PAAAAATTLVLFIAVVAGIIAGIVPSVVRQAPELANKATQGINQVQD--------- 131

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              W                I +           I               +++  +++  
Sbjct: 132 ---WLKGPPINLQDDQIDQGIHTIIVKVQESGTVIASGVFTGVSTASSLLITLGLVLVLS 188

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           FFF +DG      L S+       + +++   +   +        ++A+ + + +G+   
Sbjct: 189 FFFIKDGPRFIPWLHSVSGGRAGRHLEEVLGRMWDTLGGFIRTQALVALVDAVFIGAGLL 248

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVD 293
           + GVP    L ++T I   IP        A+++ + +    +  A  + +   +   I  
Sbjct: 249 ILGVPLAPVLAILTFIGGFIPIVGAFVAGALAVLVALVANGLTTAVIVLIIILVVQQIEG 308

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
             L+P L    +KL  +     +  G    G++G F+
Sbjct: 309 NVLQPVLQSKSMKLHAVVVLLAVTAGGSVFGIVGAFL 345


>gi|45442060|ref|NP_993599.1| putative transport protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596809|ref|YP_071000.1| transport protein [Yersinia pseudotuberculosis IP 32953]
 gi|108807943|ref|YP_651859.1| putative transport protein [Yersinia pestis Antiqua]
 gi|108812209|ref|YP_647976.1| putative transport protein [Yersinia pestis Nepal516]
 gi|145599147|ref|YP_001163223.1| putative transport protein [Yersinia pestis Pestoides F]
 gi|149365641|ref|ZP_01887676.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|153947832|ref|YP_001400538.1| transport protein [Yersinia pseudotuberculosis IP 31758]
 gi|161484825|ref|NP_669056.2| putative transport protein [Yersinia pestis KIM 10]
 gi|162420598|ref|YP_001606204.1| putative transport protein [Yersinia pestis Angola]
 gi|165927500|ref|ZP_02223332.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165939511|ref|ZP_02228057.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008510|ref|ZP_02229408.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166214549|ref|ZP_02240584.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167402381|ref|ZP_02307844.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167422322|ref|ZP_02314075.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167427024|ref|ZP_02318777.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469921|ref|ZP_02334625.1| hypothetical protein YpesF_19009 [Yersinia pestis FV-1]
 gi|170023910|ref|YP_001720415.1| putative transport protein [Yersinia pseudotuberculosis YPIII]
 gi|186895883|ref|YP_001872995.1| putative transport protein [Yersinia pseudotuberculosis PB1/+]
 gi|218929539|ref|YP_002347414.1| putative transport protein [Yersinia pestis CO92]
 gi|229837981|ref|ZP_04458140.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895178|ref|ZP_04510353.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|229898543|ref|ZP_04513688.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229902539|ref|ZP_04517656.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|270490288|ref|ZP_06207362.1| AI-2 transport family protein [Yersinia pestis KIM D27]
 gi|294504213|ref|YP_003568275.1| hypothetical protein YPZ3_2103 [Yersinia pestis Z176003]
 gi|45436923|gb|AAS62476.1| putative membrane protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590091|emb|CAH21725.1| putative permease, PerM family [Yersinia pseudotuberculosis IP
           32953]
 gi|108775857|gb|ABG18376.1| membrane protein [Yersinia pestis Nepal516]
 gi|108779856|gb|ABG13914.1| putative membrane protein [Yersinia pestis Antiqua]
 gi|115348150|emb|CAL21078.1| putative membrane protein [Yersinia pestis CO92]
 gi|145210843|gb|ABP40250.1| membrane protein [Yersinia pestis Pestoides F]
 gi|149292054|gb|EDM42128.1| putative membrane protein [Yersinia pestis CA88-4125]
 gi|152959327|gb|ABS46788.1| putative membrane protein [Yersinia pseudotuberculosis IP 31758]
 gi|162353413|gb|ABX87361.1| putative membrane protein [Yersinia pestis Angola]
 gi|165912560|gb|EDR31191.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165920555|gb|EDR37832.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992892|gb|EDR45193.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166204251|gb|EDR48731.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166958828|gb|EDR55849.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167048214|gb|EDR59622.1| putative membrane protein [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054003|gb|EDR63831.1| putative membrane protein [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169750444|gb|ACA67962.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           YPIII]
 gi|186698909|gb|ACC89538.1| protein of unknown function UPF0118 [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679986|gb|EEO76085.1| putative membrane protein [Yersinia pestis Nepal516]
 gi|229688091|gb|EEO80162.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229694347|gb|EEO84394.1| putative membrane protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701812|gb|EEO89836.1| putative membrane protein [Yersinia pestis Pestoides A]
 gi|262362330|gb|ACY59051.1| hypothetical protein YPD4_2144 [Yersinia pestis D106004]
 gi|262366361|gb|ACY62918.1| hypothetical protein YPD8_2243 [Yersinia pestis D182038]
 gi|270338792|gb|EFA49569.1| AI-2 transport family protein [Yersinia pestis KIM D27]
 gi|294354672|gb|ADE65013.1| hypothetical protein YPZ3_2103 [Yersinia pestis Z176003]
 gi|320014721|gb|ADV98292.1| putative membrane protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 352

 Score =  106 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 106/343 (30%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      + +   T   ++   
Sbjct: 12  RLVAMLAMLVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKLLE-RIKIPRTLAVILLVT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++    L        + L     +  +    +  +           ++      
Sbjct: 71  IIILLMVLLFGRLGSSLNEFARSLPQYRGMMLEKMRDLQEFALHFNIEFSVDDIMKYVDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S   +++ + F   +   +  ++
Sbjct: 131 ------------------SMAMNFVTRLLSHLSGAMTSTFLLLMTVVFMLFEVERMPYKV 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  P     I +     +    +  TII+I  G+V+       GV      G++ 
Sbjct: 173 QLMFDN--PEKGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 231 FVLNYIPNIGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  ++ + +    +
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIAKIVLELTPAGYR 333


>gi|170718389|ref|YP_001783612.1| hypothetical protein HSM_0261 [Haemophilus somnus 2336]
 gi|168826518|gb|ACA31889.1| protein of unknown function UPF0118 [Haemophilus somnus 2336]
          Length = 350

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 107/343 (31%), Gaps = 18/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                 Q ++    + +IL  +        P L +L I     P+ +    +K       
Sbjct: 4   RNSSLTQVLVACAAIIVILGGIKLASEIVVPFLLSLFIAIICSPVVNFMTKRKIPH---- 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A   +  L +V   FL       ++E    +                +      ++L
Sbjct: 60  -WLAITLLFVLIVVLFYFLASLISNTVQEFTQSIPQY------------KVLLSQRLNDL 106

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     L   +++         I +F SRF + F +   +I  + + + F   +  
Sbjct: 107 LAFAHHFNIPLFFSTDSINDDFDPSIIMKFVSRFLLSFSNVVTNIFVLFLIVVFMLAEAP 166

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ Q+   L         +     + + +       TI ++  GL +     +  +   +
Sbjct: 167 TVKQKFTKLIVTENTVTQQNYIERILQGVIGYLGVKTITSVMTGLCIYFVLSVLDIQYAI 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               +  ++  IP    I      I    +         + +   +   +V   L P ++
Sbjct: 227 LWATLVFLLNYIPNIGSIIAAVPVIVQSFLLNGFITGLVVSIAFILINTVVGNVLEPKMM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  + L  L  F  L+     +G +G+ +   L   + +  + 
Sbjct: 287 GRKLGLSTLIVFLSLLFWGWLLGTVGMLLSVPLTMGLKIALEA 329


>gi|108763996|ref|YP_635383.1| hypothetical protein MXAN_7270 [Myxococcus xanthus DK 1622]
 gi|108467876|gb|ABF93061.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 396

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 90/309 (29%), Gaps = 15/309 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           +P      + +        V+A + ++ +    +  L    + ++    S V    +  +
Sbjct: 91  YPPVRWLSAHRV-PRALATVLALLVLLLVGAAGVFLLVPRIVQQVGAAGSNVKEGMEGLV 149

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                                                  + +  I               
Sbjct: 150 GWMT-------------QELPVSREQIDGLFEKGLDFLKSNLGRITTGVLAGANFAAQAV 196

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
              +  +  LFFF +D   +   + +          + +       +     G+ I+A+ 
Sbjct: 197 AGGLLTVTLLFFFVKDTERLGGWVLARVSPSRRDTVRAVGLRAWGTLSGYLRGVVIVALV 256

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFL 283
           + + +G+   + GVP  + L  +T +    P     ++     +  LI     +A  +  
Sbjct: 257 DAVGIGAGLAIIGVPLVLPLAALTFVGGFFPVIGATLAGVVAVLVALITNGPLDALLVLA 316

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                  +    L P ++G  + L  +     +  G    G+ G F+   + A+++    
Sbjct: 317 VVLGVQQLESNVLEPVVMGRAVPLHPVVILLSITAGGVLFGVAGAFLSVPVAAVLSAAGN 376

Query: 344 ESIMAIKEN 352
           E  +  +  
Sbjct: 377 ELRLRDEAR 385


>gi|147677594|ref|YP_001211809.1| permease [Pelotomaculum thermopropionicum SI]
 gi|146273691|dbj|BAF59440.1| predicted permease [Pelotomaculum thermopropionicum SI]
          Length = 351

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 113/334 (33%), Gaps = 2/334 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   +++++  ++     P L A +      PI      K   S     + A V 
Sbjct: 11  IAVTVISAVVVIIAFNYILPILVPFLIAFVFSVLMEPIIRVLEQKARFSRGPATMAAMVL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                 V    L    + E+ +L   +  A        +   +     + S       S 
Sbjct: 71  FFGGIAVVFSVLVLQLVAELIQLSLSLPAAAAEFRNYYQVFIEKITAFYISLPPGVISSI 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q++  L+++      +  +      F  +       ++  IIA +F  RD + I + L 
Sbjct: 131 EQNISTLTDS--LQGLVSRMANSLMMFVSLVPGTLTVLVVSIIATYFLARDRYLIIKFLM 188

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +    +      + + +            ++ +   ++  +  +L G    + +G++  
Sbjct: 189 RVFPSPWGEKAVAVIQDMSAAFIGYLRAQAVLVLITTVLSVTGLYLIGAKYALTIGLLVG 248

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +IP   P +     +                   + + +  + L   +V   + L  
Sbjct: 249 FFDLIPVLGPATVYIPWVIWSFVTGATAFGVKIAVLYLIVLLTRQFLETKIVSANLGLHP 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L T   +  G++TMG+ GL +GPVL+  +  I K
Sbjct: 309 LATLIAMYAGLKTMGISGLIMGPVLLIALQSIVK 342


>gi|168214258|ref|ZP_02639883.1| putative domain of unknown function [Clostridium perfringens CPE
           str. F4969]
 gi|170714314|gb|EDT26496.1| putative domain of unknown function [Clostridium perfringens CPE
           str. F4969]
          Length = 345

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 109/319 (34%), Gaps = 13/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         +   +  +  G +              +     T      +
Sbjct: 94  KEGESFDGLINGIEFFINDLIMKMKFMELGFF-------------DVIEAQVTEKLNILL 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                      + F +  L+   + +  ++F   G  +S +          A  K + R 
Sbjct: 141 VSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNLGRD 200

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +     +
Sbjct: 201 VDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGAIPA 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + +         + L   I   I    + P +    I +  +     L+ G +  GLL
Sbjct: 261 IVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGDQIGGLL 320

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+     +  +I V++ + 
Sbjct: 321 GMIFIVPIAVVIKVLFDDW 339


>gi|119488027|ref|ZP_01621471.1| hypothetical protein L8106_11537 [Lyngbya sp. PCC 8106]
 gi|119455316|gb|EAW36455.1| hypothetical protein L8106_11537 [Lyngbya sp. PCC 8106]
          Length = 357

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 114/323 (35%), Gaps = 13/323 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            +L+   +L+     VL+A +I F           +      F      +  +      +
Sbjct: 26  FLLLLFKYLQPVPGIVLTASLIAFLLEYPIVFLEQR-GVPRGFAITGVILLALVFLGFLI 84

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L      ++ E V+++    + G      L +        +   ++L    S      
Sbjct: 85  FVLSPLVFQQLIEFVNRLPAWIEEGRKQLDTLDE--------QTILQYLPMDISDLTAQI 136

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           +   +  +  +        +  ++  L++I  ++       +G  +   L S        
Sbjct: 137 SGQLSRTLKSLTAEIIDLTLNTINSALNLIVTVVLTILLVLNGEKLWDGLISWLP---GE 193

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           + ++I   + +  R  + G  I+A+   + L  A+ +  +P  +  G     +++IP G 
Sbjct: 194 WSEQIQLTIQQSFRGYYSGQAILALILSIALSFAFLIFQIPFWLLFGFGIGSLSLIPFGG 253

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             +   +S  L    N+F    +     I   I +  + P L+GG   L        L+ 
Sbjct: 254 TFAVLVISTLLA-LHNVFLGLKVLAIALIIGQINENVIAPRLIGGITGLNPALVIVSLLA 312

Query: 319 GVRTMGLLGLFIGPVLMALIAVI 341
           GV+  G+LGL +     +L+  I
Sbjct: 313 GVKIAGVLGLLLAVPTASLVKKI 335


>gi|312891269|ref|ZP_07750788.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311296229|gb|EFQ73379.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 377

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 105/335 (31%), Gaps = 17/335 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + +  I       K   AP++ + +      P+     +K        A+I+ +
Sbjct: 11  KLAFVLVSLLCIGYIAIIGKELLAPLVFSFLFAMLLLPMARFLENKCRIPRGGAAMISVI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                  + +  +      +M  L   +    +    +   L       +   +  +   
Sbjct: 71  LFTAFIALIIYLVGS----QMGTLSEDIPKIKEQFTNITDQLHRWLVNEFHINVNQQI-- 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       +K               +      L ++F+ I  FF       +   L
Sbjct: 125 ----------NTVKKEANAAGASVIGSAFLSLSSIVLFLVFIFIYTFFVLFYRKILIGFL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         ++  +  +++    G+ +  +   +++     + G+   + L +IT
Sbjct: 175 LKAFGTDSEVLVFDVAEQIQYIMKKYISGLFLEMLTVCIIVFGILTILGIKYALLLALIT 234

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I  ++P     +  A+   L L       A  +         +    + P +VG  ++L
Sbjct: 235 GIFNLVPYVGIFTAMAIGTTLTLGTSGPAKAIEVAAAIVGVHLVDSNIIMPRIVGSKVRL 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L    G+V G     + G+F+   ++A++ +I+
Sbjct: 295 NALIVVLGVVVGEMVWDISGMFLSIPVLAIVKIIF 329


>gi|323342782|ref|ZP_08083014.1| hypothetical protein HMPREF0357_11195 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322463894|gb|EFY09088.1| hypothetical protein HMPREF0357_11195 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 368

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 114/353 (32%), Gaps = 4/353 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +   +   +  + L F   +  P +   +I F   P+ S    K        +++  +
Sbjct: 15  NILYFAISFSLAALVLKFSTKYLMPFIIGFVIAFLLKPVISKLTKKIGNQKG-SSLLVVI 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L    + ++    +  ++     V    Q  +        +        L    + 
Sbjct: 74  LFYILLAAAIFWILVAVIAGIQNFAKAVPSFYQTTLSPAIESIIVWVEGAVVNLDPDVID 133

Query: 129 HPQSLKILSETFLKT---NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +S+       +             F +R         +SI+  II+ FFF  D   I 
Sbjct: 134 IIESIGRSVVQSIDGIFKGISGGTINFITRLISSIPSVLISILIAIISSFFFTLDYQGIV 193

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +           I   +  V+         +     + L  A+++ G+ + V L 
Sbjct: 194 SSVMGMIPIKQRTLILDIKDGLISVLGKYLRAYAKLMSLTFVELSFAFFILGIHNPVGLA 253

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + AI+ ++P     +       + +           +   I + ++   L P +VG  I
Sbjct: 254 FMVAIIDILPVLGTGTVMIPWFIIELIMGNTPLGIGLMITYIVITVIRNILEPKIVGDQI 313

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L  L T   +  G++  G +GLF  P+   ++  +  E  + I    E+ + 
Sbjct: 314 GLHPLATLILIYVGLKMFGFIGLFALPISATILKTLHDEGKINIFRRTEEPTE 366


>gi|163782562|ref|ZP_02177559.1| hypothetical protein HG1285_16800 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882135|gb|EDP75642.1| hypothetical protein HG1285_16800 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 355

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 68/339 (20%), Positives = 143/339 (42%), Gaps = 6/339 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +++F I  ++  L  F  P+L A++IG   +P++     K   + T  A++ ++ V
Sbjct: 10  FFMLLVLFFIFAAVLMLLPFAVPILWAVVIGIVLYPLHRYIE-KVVRNRTLSALLMSLIV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQH--GIPVPRWLSDIPGGMWASELWTKHLS 128
               IVPL  +    + ++ +   +V++  Q      +   L   P      E ++  + 
Sbjct: 69  FLFIIVPLSVVSVLVLQQLVDATQRVMMYLQSHSYQELLETLGKSPVVKDYFERFSPVME 128

Query: 129 HPQ-SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             Q               + F+     +   I       I   ++  FF  RDG  I ++
Sbjct: 129 FVQKEEFRQLIADSLNRVLKFLGDKLGQLAFIAGRNLFYIFVFLLTFFFILRDGPGILRR 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           ++ L         + +   + + I +   G    A+ + +    AY + G+   +   V+
Sbjct: 189 VERLIPM-NDEDLESVMATMYRTILAVVYGSVGTALLQSIFAFFAYSVVGIRFALLWSVL 247

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T   A IP  GA   +  +++Y  I+   + A  L  WG + +  +D  +RP ++   ++
Sbjct: 248 TFFAAFIPPFGASAVWFPLAVYSFIEFGTWQAAFLGAWGVLVISSMDNFVRPLIIKQGVQ 307

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +P++  FF  +GG+   G +GLF+GP++   +  ++K  
Sbjct: 308 IPYVVLFFATIGGLLKFGFIGLFLGPIIFTTLFALFKIY 346


>gi|90022219|ref|YP_528046.1| succinyl-diaminopimelate desuccinylase [Saccharophagus degradans
           2-40]
 gi|89951819|gb|ABD81834.1| protein of unknown function UPF0118 [Saccharophagus degradans 2-40]
          Length = 356

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 51/350 (14%), Positives = 118/350 (33%), Gaps = 12/350 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +     + + ++  +++   ++ +  +    AP+++A+II F    I +   +    S  
Sbjct: 9   LERYFADEEAVLVAVLLVASVIIIVTMGVVLAPMIAAVIIAFLMQGIVARLKTW-GVSHI 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA + +    +V L++L      ++  L ++     + G  +   L      +   
Sbjct: 68  VAVSIAFLILAGSLVVMLIYLLPALWQQVLNLFAEAPRMLKDGQSLLLLLPQEYPALITE 127

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +   + +   ++                   F+     I +   + ++ + I +FFF +D
Sbjct: 128 DQVKQLMGALRTDLAQ--------AGQTAVSFSLAQLPIIVAALIYLVLVPILVFFFLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   + S+         +KI R + + I +   G  I  +  G V    + L G+  
Sbjct: 180 GQQMLGWVASVLPRE-RPVMQKIWREMNQQIANYVRGKVIEIVIVGGVSSLTFSLLGLRY 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + LG+      ++P       T     +     G       + +   I   +    L P
Sbjct: 239 ALLLGIAVGFSVLVPYIGAAIVTLPVAAIGFFQFGWGTEFLYIMIAYTIIQALDGNVLVP 298

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L    +K+  +     ++      G  G+F    L  L   I       
Sbjct: 299 LLFSEAVKMHPVMIILSVLVFGGFWGFWGVFFAIPLATLCKAILNAWPTK 348


>gi|254383382|ref|ZP_04998734.1| integral membrane protein [Streptomyces sp. Mg1]
 gi|194342279|gb|EDX23245.1| integral membrane protein [Streptomyces sp. Mg1]
          Length = 358

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 106/349 (30%), Gaps = 19/349 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   +  + +      +    P L AL+      P++   + +   S +  A +  ++
Sbjct: 24  VLLVTGVAAVGVWLCVTFQAAVTPALLALLGAALLGPMHRRLV-RMGVSRSLAAALTCLA 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +       +    +    ++VS +V A Q                            
Sbjct: 83  VVAVVGGATYVVVGALIDTGDQIVSALVRAGQDLAE-----------------HFGAAGT 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +   L                 +  +   + I  ++ +FFF RD   I+  L 
Sbjct: 126 SLQDLASNAKELLAKFGGTAASGVITGISVVGEMIATAILALVLIFFFLRDSHRIAGALR 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +LG        + ++R     +     G T +A+ + + + +A     VP  + LG +  
Sbjct: 186 ALGPRSAADTVEAMARRAFLAVEGFMRGTTFVALIDAVFITAALLALRVPGALGLGALVF 245

Query: 250 IMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I A IP    I       +  L          +         +    L+P +    +++ 
Sbjct: 246 ITAYIPYLGAILSGAVAVLVALADRGWVIGLWVLGVVLAVQMLEGYVLQPLIQSRTVQMH 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                  +  G    G+LG+ +   + A    +  E         +  +
Sbjct: 306 PAVVMLAITVGASVAGILGMLLAVPMTAAAFGVASELRARYGAPGQAPA 354


>gi|291535177|emb|CBL08289.1| sporulation integral membrane protein YtvI [Roseburia intestinalis
           M50/1]
          Length = 368

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/325 (13%), Positives = 104/325 (32%), Gaps = 10/325 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 P L+A  +             +       +AV   +    +  V L F   Y +
Sbjct: 34  AGSVLFPFLAAFAVAVLLSGAVQFIAERMHIQRGIVAVAVVLFFYIILAVFLYFAGSYLV 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS----------HPQSLKIL 136
             + +   ++ +     I             + S  +   L+             +  + 
Sbjct: 94  RLIYDTARELSVFFSDTIVPVMQRFYQWLDRFVSVFYPTELTGKTSGLHGVGEESAQTLK 153

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +   L +   D +    S        + + ++  +IA  F   +   I   L       +
Sbjct: 154 NAGKLMSGISDGVIDGVSGMAAGIPGFFMKLLIAVIATVFMELEFPEIKAFLKRQIPAEY 213

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              ++     V   +    L   +I       L +  +L G+ +  A+  I A++ ++P 
Sbjct: 214 QRAFRDGKNYVTGTMGKCILSYCLIFGMTFAELTAGLFLLGIKNAFAIAFIIAVLDILPV 273

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               +       L       +         + + +V   + P LVG  + L  +     +
Sbjct: 274 LGTGTVLIPWAVLAFASGRISTGVGVFGLYLVITVVRNLIEPKLVGKQMGLSPVIMLPCM 333

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
           + G++  G++GLF+ P+L++ +  +
Sbjct: 334 LIGLKFFGIIGLFVVPLLVSFLKQL 358


>gi|225572907|ref|ZP_03781662.1| hypothetical protein RUMHYD_01098 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039720|gb|EEG49966.1| hypothetical protein RUMHYD_01098 [Blautia hydrogenotrophica DSM
           10507]
          Length = 343

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 118/342 (34%), Gaps = 4/342 (1%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   + I    I+  + +   ++     P L   ++    +P       K     ++  
Sbjct: 2   SLEVRRKICAIGIVIGVYLGFRYVVPVAVPFLIGWLLAVWVYPAGEWIERKIHLKKSWAG 61

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  V ++ LF++ L         ++K +       +  G+ +          +   +  
Sbjct: 62  AVILVGLLTLFLLLLWKGGILLWEQIKLIFLNFHNLSDWGMRILDQCCQAAEQVTGIKKE 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                       +    +++       +  S  G IFL   +  +   ++   F ++  S
Sbjct: 122 VSRQFILTQAGQMQRNLMESVTPQSFLKLISEAGEIFL-VGMGFLITWLSGILFLQEMDS 180

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           + +++            ++I+R + +   +      +I    GL+    +WL G P ++ 
Sbjct: 181 VKRKVRE---SSVLRGVRRIARRLKETTITYLKAQLVIMGVIGLICTLGFWLMGSPYYLL 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G    I+  +P     +F   +    +    F+     +   +   +V + L P L+G 
Sbjct: 238 FGAGLGILDALPVIGTGTFLYPAAVYFLLKKEFSVAVGCVILDLVTSVVREFLEPKLIGR 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +  +     +  G    G  G+  GP+ +++   + KE 
Sbjct: 298 RLGISPVIVLAAVYFGFYLYGPWGVLAGPLSLSVAYEVGKEW 339


>gi|119510912|ref|ZP_01630035.1| hypothetical protein N9414_20520 [Nodularia spumigena CCY9414]
 gi|119464440|gb|EAW45354.1| hypothetical protein N9414_20520 [Nodularia spumigena CCY9414]
          Length = 343

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/350 (13%), Positives = 115/350 (32%), Gaps = 11/350 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ +  + I L  L+ ++     + +A+++      +   F  +      +   ++ + 
Sbjct: 5   QLLGFFALVISLYILWEIRRLLLLLFTAIVLATAISQLVQRFQ-RSGMQRIWAVWLSLLI 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + I   + +    + + +ELV            +  WL     G + + L   +   
Sbjct: 64  VLIVLIGCFVLIVPPFIDQFEELVQLFPTGVAQIQQMIIWLEGTIVGPYITNLPDINNLI 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q               + + R A  F        L ++ +II       +     +   
Sbjct: 124 QQ----------LQPLTENLLRQAIGFFSTGFTAVLELLLVIILTLMLLVNPQPYRKVFV 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 +    ++I  +  + +    +G  I  +  G +      +  VP  +A  V+  
Sbjct: 174 RCFPSFYRHRVEEILTLCGEGLGHWTVGALITMVFIGFLSLLGLLVLRVPLALAHAVLAG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  IP   P     + + +      + A  + +   I   I    L P ++   + L  
Sbjct: 234 LLNFIPNIGPTLSVILPMTIGFLDAPWKAIAVLILYLIIQNIESYWLTPTVMAKQVSLLP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             T    +      G LGL +   L  +     +E +     +K K +S+
Sbjct: 294 AFTLTAQLFFAGFFGALGLIMALPLAVVAKTWIEELVFKDILDKWKQTSS 343


>gi|120599132|ref|YP_963706.1| hypothetical protein Sputw3181_2328 [Shewanella sp. W3-18-1]
 gi|120559225|gb|ABM25152.1| protein of unknown function UPF0118 [Shewanella sp. W3-18-1]
          Length = 361

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 96/309 (31%), Gaps = 12/309 (3%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
           WP+      K   + T  A +  V  + + ++    L      +   L++ +      G+
Sbjct: 54  WPVAQML--KLGINRTMGASLVLVLFLGVVMLLTFGLIPSVWRQGVSLMADLPNMIDKGL 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
              + L +        E           +    +  L T  +  I +    +    L   
Sbjct: 112 QTLQALINQYPQFINPEQL-------NVMVAELKKMLDTQHVLDIAKQIIGYSASLLVLM 164

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           +  I + + +FFF +D   + +              +++   + + I +   G  I  + 
Sbjct: 165 VYAILVPLLVFFFLKDKDQLIRGSKRFFPA-NRQLARQVWFEMNQQIFNYIRGKVIEIVI 223

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLF 282
            G+     +   G+     LGV+T +  +IP       T     +     G       L 
Sbjct: 224 VGVASYIFFAFMGLRYSALLGVLTGLSVLIPYVGATLVTLPITLVAFFQWGFTSEFGYLM 283

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L   I   +    L P L    + L  +     ++      G+ G+F    L +L+  + 
Sbjct: 284 LGYGIIQALDGNLLVPILFSDAVDLHPVIIIAAVLVFGGLWGVWGVFFAIPLASLVKAVI 343

Query: 343 KESIMAIKE 351
                   E
Sbjct: 344 NAWPKTEIE 352


>gi|332171526|gb|AEE20781.1| protein of unknown function UPF0118 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 379

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 121/351 (34%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   + + ++L  LY ++     +  A ++     PI        + S T+ +V+  +
Sbjct: 29  RAIGVVVGVLMVLWLLYTIQSVIVYLAVAAVLSLVGRPIVKFLRYSLKFSPTWASVVTIL 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + +  L       + + + L           I       +I         +     
Sbjct: 89  LLIMIIMGVLALFIPVVIDQSQHLSQ---------INFDDVKVNINRLYGEIAAYFGINK 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +    F+K      IP F +          + I  +I   FFF +D   +   L
Sbjct: 140 MTIIQGVQQADFVKNFDFGIIPTFLNSILGNLGAAGIGIFAIIFITFFFLKDNRLLINSL 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                      + ++   +  ++   F+G+ I      ++        G+ + +A+ +  
Sbjct: 200 LVFARRGNEGKFLRVFEKIKYLLSRYFIGLIIQVFTMFVLYAIILLSFGIDNALAIALFC 259

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFN---------ATCLFLWGAIELFIVDKTLRPF 299
           A++ ++P   P+    V + L+   NI              +F+       + +  ++PF
Sbjct: 260 AVLNLVPYIGPLVGGGVMLLLVTSSNINMDFRTVILPKLFWIFICYGAAQMVDNFIIQPF 319

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  ++      G+ G+ +   +   + VI KE +   K
Sbjct: 320 VFGNSVKSHPLEIFLAIIIAGLLFGVFGMILAVPVYTALKVISKEFLSEYK 370


>gi|298524597|ref|ZP_07012006.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308378833|ref|ZP_07484018.2| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|298494391|gb|EFI29685.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308359074|gb|EFP47925.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
          Length = 350

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 112/318 (35%), Gaps = 5/318 (1%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           + A +  +   P++  F  +   ++   A    +S +   +VP+  L    ++++  +V 
Sbjct: 1   MVAAVGAYLFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVD 58

Query: 95  KVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            V    +   +                 +   H++        +   +  N  +++  F 
Sbjct: 59  SVADWVRTTDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLHFL 118

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                       S I  +        +   +   +  L   L         + +  ++R 
Sbjct: 119 RDAAGSLAGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRG 177

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT-AIMAMIPGGAPISFTAVSIYLLIK 272
           T  G  +IA  +G+   ++ ++AG      +  I    +++IP G  I      I ++  
Sbjct: 178 TVNGQFVIAACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFY 237

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           GNI     + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGP
Sbjct: 238 GNIAGGIFVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGP 297

Query: 333 VLMALIAVIWKESIMAIK 350
           VLM LI       +   K
Sbjct: 298 VLMILIVTTIDVYLAVYK 315


>gi|307692538|ref|ZP_07634775.1| hypothetical protein RbacD_06105 [Ruminococcaceae bacterium D16]
          Length = 369

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/367 (14%), Positives = 118/367 (32%), Gaps = 15/367 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFA---PVLSALIIGFTSWPIYSSF---------I 52
           ++    +   + +    V L           P+     I F      + F          
Sbjct: 2   LIITYAVFLVLAVIKFDVILDLAGQVLTSCRPLFLGFAIAFVLNRPCAFFCRHYERNLGE 61

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
             K+       + + V+++ + +    F+    +  ++   + V     +   +   +++
Sbjct: 62  RFKKLGRPLAVLTSYVAMIAIIVALFSFVLPQVVDSIQLFAASVSGYMVNLQAIINKIAE 121

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                         LS      +       T     +    S    +F+   L+I+F I 
Sbjct: 122 YLDLSSLD---LSSLSSYLRSFLDGVLSSVTTAASQVMVVTSSILSMFVTLVLAIVFSIY 178

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L    +      + L +        +   + R+  +   +   G  I A   G +    
Sbjct: 179 MLAGREKLLDQGRRLLRAYLPDRHVTWVSDVIRLTAETFTNFVSGQAIEACILGGLCALG 238

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +         +GVI  + A+IP         +S +LL+  +   A    ++ +I   I 
Sbjct: 239 TFFIQPDYAALIGVIVGVSALIPVAGAYIGAILSAFLLVMVSPVRAIIFLIFLSILQQIE 298

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P +VG  I LP +     +  G    GLLG+ +   + +++  + K+ ++     
Sbjct: 299 GNVIYPRVVGTSIGLPGIWVLTAVTVGGGLFGLLGVLLSVPVASVLYALLKQDVVRRLRK 358

Query: 353 KEKISSN 359
           KE +   
Sbjct: 359 KEPVKPE 365


>gi|113461497|ref|YP_719566.1| permease [Haemophilus somnus 129PT]
 gi|112823540|gb|ABI25629.1| conserved hypothetical protein [Haemophilus somnus 129PT]
          Length = 350

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 107/343 (31%), Gaps = 18/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                 Q ++    + +IL  +        P L +L I     P+ +    +K       
Sbjct: 4   RNSSLTQVLVACAAIIVILGGIKLASEIVVPFLLSLFIAIICSPVVNFMTKRKIPH---- 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A   +  L +V   FL       ++E    +                +      ++L
Sbjct: 60  -WLAITLLFVLIVVLFYFLASLISNTVQEFTQSIPQY------------KVLLSQRLNDL 106

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     L   +++         I +F SRF + F +   +I  + + + F   +  
Sbjct: 107 LAFAHHFNIPLFFSTDSINDDFDPSIIMKFVSRFLLSFSNVVTNIFVLFLIVVFMLAEAP 166

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ Q+   L         +     + + +       TI ++  GL +     +  +   +
Sbjct: 167 TVKQKFTKLIVTENTVTQQNYIERILQGVIGYLGVKTITSVMTGLCIYFVLSVLDIQYAI 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               +  ++  IP    I      I    +         + +   +   +V   L P ++
Sbjct: 227 LWATLVFLLNYIPNIGSIIAAVPVIVQSFLLNGFITGLVVSIAFILINTVVGNVLEPKMM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  + L  L  F  L+     +G +G+ +   L   + +  + 
Sbjct: 287 GRKLGLSTLIVFLSLLFWGWLLGTVGMLLSVPLTMGLKIALEA 329


>gi|257869484|ref|ZP_05649137.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803648|gb|EEV32470.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 367

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 118/338 (34%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F+           F PVL ++ I +   P ++  I K+  +      +  + ++    
Sbjct: 29  ILFVFRPLEAIFASVFLPVLISVFIFYIFLPFFN-LIKKRSSNQHLALYVTLLLILFAAY 87

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +    + EM   ++++       I               S           SL I
Sbjct: 88  LIIQVIGPALINEMARFINQIPYIINRIIDNIDH----------SSFEELFGPLLDSLDI 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              + L    I       +    I     + +  + + L + ++DG  +   L S     
Sbjct: 138 NQISNLAAQFITGATNSLTSLVAIVSHSAIVLFTIPLLLVYMFKDGHKVPDLLVSKAPKK 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F +   ++ +   +   +   G  ++ +  G+     +   G+ + + LG+I  ++ +IP
Sbjct: 198 FRSLILQLCQDFHQAASAYISGKLLVCLYVGVFSYLIFTFLGLQNALLLGLICGVLDIIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A +    +  ++  A  L +   I  F     + P ++   + +  +   F 
Sbjct: 258 YFGPFIGAAPAFLFALSQDMKTAVLLVIGITIIQFGESYVVSPIVMNKVLHIHPIIAVFL 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+     +G +G+ +   + +++  +        ++ K
Sbjct: 318 LLIAGNLLGFVGMIVALPVYSIVMAMAGTLTRYYQQQK 355


>gi|194364041|ref|YP_002026651.1| hypothetical protein Smal_0263 [Stenotrophomonas maltophilia
           R551-3]
 gi|194346845|gb|ACF49968.1| protein of unknown function UPF0118 [Stenotrophomonas maltophilia
           R551-3]
          Length = 369

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 111/336 (33%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI      K        A++   + +
Sbjct: 32  LVVLAALAVGYTLWAAQDIILPVLLAMFFALVGNPILRLLQ-KLWIPRALGALLILGAGL 90

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + L    M   +E   ++    +    + + +                 S+ +
Sbjct: 91  GVTGSLAVQLIGPAMEWAQEAPQQLRKVARQVQDLTKPVQQANQAAENFARVAGGDSNRK 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I ++       +   PR A+    + L              FF   G S+ +   +L
Sbjct: 151 VQVIRTQLDDPYRMLTRAPRLAASVLAVVLLTL-----------FFMIYGQSLQRAAIAL 199

Query: 192 GEHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +   I R + + +    L +++I    GLV      L G+     +  G + 
Sbjct: 200 FPNRQQQRFTSDILRSIEREVSRYVLTISVINTLVGLVFAGVLMLLGISLQEALLWGTVA 259

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+   A+ + +  +   +   A            +  + + P ++G  +K
Sbjct: 260 ALLNFAPYVGPLIGVALMLLMGFVEFRDPLQALLPAAAYLGLHTLEGQMVTPIVLGRRMK 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     L+      G++GL +   L+  I ++ 
Sbjct: 320 LSPLVLILALMLFGWAWGMIGLLLAVPLLVCIKLVL 355


>gi|16330887|ref|NP_441615.1| hypothetical protein sll1166 [Synechocystis sp. PCC 6803]
 gi|1653381|dbj|BAA18295.1| sll1166 [Synechocystis sp. PCC 6803]
          Length = 367

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 114/348 (32%), Gaps = 10/348 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++   ++ + +   +  F  ++ A ++ F      +  +SK                 
Sbjct: 20  IFFLNGVLLSLIINRFRELFDYIIIATLVTFLLKLTINFLVSKGIGKR-LAIFAVITISF 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L  +  + L      ++  L   +             L +    +             Q
Sbjct: 79  ALIALGGITLIPLMGNQLGNLSQDIPRWLSGSQEHLANLKNSTLFLTLDNAGVNVDDLFQ 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +     L       I + + +     +   +  + +++   F    G +  Q + S 
Sbjct: 139 KAYLTLSKELDR-----IGQISLKVLTETIGGVVDTLVILVLTIFLLVGGDTFWQGILSW 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     KI +   ++ R  F+   I+A G  +     +   G+P  +       + 
Sbjct: 194 LPSPWEK---KIPQYAGEIFRDYFISRLILAAGSSMARLVVFMALGIPYSILFAFSLGLA 250

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++IP    +     ++ LL+KG    A   F+   +   I D  + P L+G  I L  + 
Sbjct: 251 SLIPFAGAVVTLIGTLVLLLKG-WVVAVKFFVSAIVIDQITDNGVAPKLMGDKIGLNPVW 309

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               +  G    GLLG+ +   + ++I  +  +      EN+E  +  
Sbjct: 310 ILISIFIGAEIAGLLGVLLAVPIASVIKKVIDDMRAGKTENEEIDTEE 357


>gi|254975639|ref|ZP_05272111.1| hypothetical protein CdifQC_10029 [Clostridium difficile QCD-66c26]
 gi|255093026|ref|ZP_05322504.1| hypothetical protein CdifC_10289 [Clostridium difficile CIP 107932]
 gi|255314768|ref|ZP_05356351.1| hypothetical protein CdifQCD-7_10487 [Clostridium difficile
           QCD-76w55]
 gi|260683651|ref|YP_003214936.1| hypothetical protein CD196_1915 [Clostridium difficile CD196]
 gi|260687311|ref|YP_003218445.1| hypothetical protein CDR20291_1958 [Clostridium difficile R20291]
 gi|306520501|ref|ZP_07406848.1| hypothetical protein CdifQ_11816 [Clostridium difficile QCD-32g58]
 gi|260209814|emb|CBA63667.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213328|emb|CBE04908.1| putative membrane protein [Clostridium difficile R20291]
          Length = 361

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 102/323 (31%), Gaps = 4/323 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           FF+P L A+++     P+   F  K +        ++ + +  +    +  L       +
Sbjct: 42  FFSPFLLAILLALLLNPLVMLFEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTL 101

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L++++ +   +              +   +    H+ H     +   +          
Sbjct: 102 NRLINEMPMYTDYIDSFIEK---NMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNF 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             +      +  +  +  I  I  ++   +      + L S           +  R    
Sbjct: 159 LIYTLSISSMLFNMTMGFILSIYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHD 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWL-AGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +     LG  + ++  G++    +     + + + L  I  +  +IP   P       I 
Sbjct: 219 IFYDYLLGRILDSLIIGIIAFLGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIA 278

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + I  +      +  +  I   +    + P ++G  + +  +     ++ G    G +G+
Sbjct: 279 MTILYSPQKTIWVIAFLFILQQLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGV 338

Query: 329 FIGPVLMALIAVIWKESIMAIKE 351
           F+   + A++     + I    +
Sbjct: 339 FLSVPIAAVVKTYVDKYIDNRLQ 361


>gi|171779330|ref|ZP_02920294.1| hypothetical protein STRINF_01175 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281947|gb|EDT47378.1| hypothetical protein STRINF_01175 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 371

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 108/331 (32%), Gaps = 12/331 (3%)

Query: 33  PVLSALIIGFTSWPIYSSFI----------SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           P L    I +    + S +              +       + A ++ + L       + 
Sbjct: 41  PFLIGAGIAYIVNIVMSLYEMIFTRLIKNKYLLKVKRAVSMISAYLTFILLISWLFSIVL 100

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +  L+        + I        +   +      +   +            + 
Sbjct: 101 PDLIASINSLLKIDTSGIANFIKEVNDNKVVKDVLAYFGTSSDVTTTLSDYSQQILNQVL 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +     I    S      L+  +S++F I  L    +     +  +DS     +      
Sbjct: 161 SVLTS-ILTSVSTIASTLLNVFISLVFSIYVLASKEQLSRQFNLLIDSYLG-KYAKTVHY 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +  I+ +     F+G T+ A+  G +      L  +P    +G++ A  A+IP       
Sbjct: 219 VLDILHQRFHGFFVGQTLEAMILGSLTAGGMLLLHLPYAATIGILVAFTALIPVVGAYIG 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L+   ++  A    ++  +        + P +VGG I LP +     +  G   
Sbjct: 279 LTIGFILIATQSVSQAIFFVIYLVVLQQFEGNLIYPRVVGGSIGLPGMWVLMAITIGAAL 338

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G+LG+ +   L A +  I K+++   +EN+
Sbjct: 339 WGVLGMLVAVPLAASLYQIIKDNVAKRQENR 369


>gi|147676778|ref|YP_001210993.1| permease [Pelotomaculum thermopropionicum SI]
 gi|146272875|dbj|BAF58624.1| predicted permease [Pelotomaculum thermopropionicum SI]
          Length = 364

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 109/335 (32%), Gaps = 3/335 (0%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
                +    + I  ++   +  +F P L  LI+     P+   F  K +        +A
Sbjct: 12  ITNVALLAATLVIAAIAFKLVIPYFLPFLLGLILAVAIEPVVGLFQ-KLKMPRAAATGMA 70

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  +              ++E+   ++               L         +E +   
Sbjct: 71  MLVTVGSLAAVAWLTVSKLIVELARFLANAPSHTSIMKDQSSLLMQRLQSY--AEGFPPE 128

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +H  +      T + +  +  + R          +  L ++  +IA FFF +D   + +
Sbjct: 129 FTHHLNKNAEMLTEMFSEKLSLLAREILGVITGLPNQLLLVVIALIAAFFFSKDLPILKK 188

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ S     +   ++ ++  +            I++    LV+ +   +      VA+ +
Sbjct: 189 KMLSAIPREYHHKFEIMAGEIYHSSIGFIKAQAILSAITSLVILAGLIILKTEYVVAISL 248

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +++ IP     +     I + +           +     + ++  ++ P ++G  + 
Sbjct: 249 LGGLVSPIPVLGVGTIFIPWIIISLLEGKTFMAAGLIILFFAVVVIKHSIEPKVLGENMG 308

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  L     L  G    G  G  +GP ++     +
Sbjct: 309 IAPLSVLISLYVGYELFGAYGFILGPFVLITYNAL 343


>gi|171912897|ref|ZP_02928367.1| permease [Verrucomicrobium spinosum DSM 4136]
          Length = 452

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 40/401 (9%), Positives = 113/401 (28%), Gaps = 67/401 (16%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   ++++    + FL+    P   A ++ +   P+ S  I     +     ++  V   
Sbjct: 38  LSIGLIWLFTRVISFLQPLLIPFAVAGVLAYLLEPLVSRLIKW-GLNRQRAVMLVFVLAT 96

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +   L +      +  +   +V    +         +        ++     L    
Sbjct: 97  ASIVGVSLVIVPAFARQSVDFAKEVPGYAEKVRTQVLGWATSLNTRLMNDYGVDILHWSV 156

Query: 132 SLKILSETFLKTNG-------------------------------------IDFIPRFAS 154
                +                                              D++     
Sbjct: 157 PQTHPTSNDAGAGLPTPATAVQEGTDATAGTAARDAAAAEASYFTLQDLLSGDWLKSTLP 216

Query: 155 RFGMIFLDYC--------------LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + G    ++               LS++ + + L++F  +   I++            + 
Sbjct: 217 KVGQNAWNFIRAGVGGFLGGFGFLLSLVIVPLYLYYFLTESPKIAESWSHYVPLRASQFK 276

Query: 201 KKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            ++      +   + + F G  ++++  G+  G    + GV     +G+   ++ +IP  
Sbjct: 277 DEVVSTLAEINGYLIAFFRGQLVVSLINGVATGLGLVIVGVKFGWLIGLSLCVLGIIPYL 336

Query: 258 APISFTAVSIYLLIKGN-----------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +     ++ +                      +    A+   I    + P +VG  + 
Sbjct: 337 GIVVCWIPAVIIASVQGGSYLIPASSPWWVFPLVVTAIFAVVQQIDGLFITPKIVGESVG 396

Query: 307 LPFLPTFFGLVGGVRTM-GLLGLFIGPVLMALIAVIWKESI 346
           L  +     +      M GLLG  +   + A + V+++  +
Sbjct: 397 LHPMTVIVSVFAWSLVMGGLLGAILAVPMTAAVKVLFQRYV 437


>gi|289706835|ref|ZP_06503178.1| conserved hypothetical protein [Micrococcus luteus SK58]
 gi|289556520|gb|EFD49868.1| conserved hypothetical protein [Micrococcus luteus SK58]
          Length = 420

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 119/345 (34%), Gaps = 20/345 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           R   + P+ ++  + +  +++ + F +      APV   L +   ++P+ +  I +    
Sbjct: 18  RPHRMWPRMLVIVLTLAGLVLVVQFFQGIASIAAPVFLGLNLVIVAYPLQAWLIRR-GLH 76

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A    + V+ +  V    + + G+  + EL        Q  + V  WL++      
Sbjct: 77  PVLGATTTVLLVVAVMAVFAGMMVWSGLELVAELPKYTDRFQQIVLDVSHWLNERGVTPD 136

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                        S+ + + T    + I  I         + +   + + F+ +      
Sbjct: 137 ------MVSQQLASIDMSTVTGTAVSAITKIATNVYAVFGLLVTVIMGMFFLAMDSMDVE 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           R    +S              +        + +R  ++  T+  +   ++   A  L GV
Sbjct: 191 RRVRLLST---------ARHEFGHALVEFAQGVRRYWVVTTVFGLIVAVLDVIALMLIGV 241

Query: 239 PSHVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  +  GV++ +   +P    I      ++  L  G   +   + +  ++  F++   ++
Sbjct: 242 PLALVWGVLSFLTNYVPNVGFIIGLLPPAVLGLAAGGWSDFLWVVVSYSVLNFVLQSVIQ 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P + G  I +    +F  L+     +G LG  +      L   + 
Sbjct: 302 PKVAGDAIGVIPTVSFLSLLFWAWVLGPLGAILALPCTLLAKAVL 346


>gi|16331809|ref|NP_442537.1| hypothetical protein sll0597 [Synechocystis sp. PCC 6803]
 gi|1001769|dbj|BAA10607.1| sll0597 [Synechocystis sp. PCC 6803]
          Length = 375

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 97/304 (31%), Gaps = 10/304 (3%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           K     +      +  + +  + LL +    + ++ +L+  +    + G      L    
Sbjct: 76  KGLKRPWAVASVLLIALVVISLFLLIVIPLAIDQLGQLLDNLPGWFRSGNAQLLMLQAW- 134

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                      +L       I       +  ++           + +   ++ + +++  
Sbjct: 135 -----VNEHYANLQVDLQPLISQAIEKLSRILNSFGNQLLGLVGVTISTSINGLILLVLT 189

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F    G  I   + S   H +    + +  ++       F    I+A    +     + 
Sbjct: 190 IFLVLGGEKIWDGIFSWFPHPWQ---RDLQNLIRDTFEGYFATQAILAGILSVAQMVVFT 246

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           L   P  +   +   +  +IP  + +S   V   LL+  N +    + L   I   I D 
Sbjct: 247 LLQAPYAILFAITIGLSTLIPFASALS-IIVISLLLMLENFWLGVKILLAAVIVGQINDN 305

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            + P L+G    L        L  G +  G+LGL +   L ++I           K++ E
Sbjct: 306 VISPRLMGNRTGLNPAWIIVSLFVGSKLGGVLGLLVAVPLASVIKATSDRLRGLPKKSGE 365

Query: 355 KISS 358
           + + 
Sbjct: 366 QPAE 369


>gi|259502286|ref|ZP_05745188.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259169751|gb|EEW54246.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 373

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 111/334 (33%), Gaps = 15/334 (4%)

Query: 31  FAPVLSALIIGFTSWPIYSSFI----------SKKEESSTFLAVIATVSVMCLFIVPLLF 80
             P+L   II +    +   +             ++    +  V++ +S+  +  + +  
Sbjct: 40  VTPLLIGAIIAYIVNLLLRKYEQLYQQLFKGPRARKFQRLWGIVLSYLSIFLILAIVIRL 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  ++ L++         I      S++       ++     +  + +       
Sbjct: 100 VIPELISCVQLLINNHSRVITRFITAFEHNSNLQDIFRRFDIRHLSWAKAEKILSYGFGG 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                +       S      + +  SI  +I      ++    I   L  +   L     
Sbjct: 160 TFKALMSTASSVVSVATTSVVAFFFSIYLLIYKEMLAHQCTRLIDAYLGKIKRPLM---- 215

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             + R       +   G    A   G+       +  +P    +GV+TAI A+IP    I
Sbjct: 216 -YVVRTFDNCYSNYIGGQCKDAAILGITCFIGMTILRMPYATMIGVVTAIGALIPIIGAI 274

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              ++ + L+   +   A    ++  +   + ++   P +VG  I LP +  F  ++ G 
Sbjct: 275 LGASIGVVLIFAVSPLKAGIFLVFIIVLQQLDNRITYPLVVGKSIGLPSVWVFAAVIVGG 334

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              G+LG+ +   L A +  I    +   + N +
Sbjct: 335 SISGILGMMLTVPLFAALYQIVATDVGKREANAQ 368


>gi|190889747|ref|YP_001976289.1| hypothetical protein RHECIAT_CH0000115 [Rhizobium etli CIAT 652]
 gi|190695026|gb|ACE89111.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 385

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 62/335 (18%), Positives = 127/335 (37%), Gaps = 5/335 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +I      ++  +  F   V+ + I+    +PI+++            AV+  V  
Sbjct: 28  VRLGIIGLFAYWTMVLIAPFALIVIWSAILAVALFPIFAALSGLIGNRPVIAAVVIVVFS 87

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L I PL  +        + L+ K+   N      P  + + P            ++  
Sbjct: 88  LVLIIAPLALVAVNFADAAQALIGKLREGNFTLPAAPAAIREWPVVGERIHGAWNQIASD 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  I+            I    +  G   L + +SI+   I    F     S++  +  
Sbjct: 148 LAATIIKFQAPIREVTAVIVAKLASIGGGVLSFVVSIVLSGI----FLTRSASLAAAIQV 203

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L   +        +R+    +R+   G+  +A  + L+ G  + L  +P+   L  I  +
Sbjct: 204 LASRIAGEKGVGFARLAGTTVRNVSRGVIGVAFLQALLCGLCFALFDIPAGGPLTFIVFV 263

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++  G  +    V I         +   +F   AI + I+D  L+P L+   +  P  
Sbjct: 264 LCLMQLGPALVLLPV-ILWAWFSWPTSIALVFTVVAIPIMIIDNILKPILMARGLSTPMP 322

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               G++GG  + GLLGLF+GPV++++   + +  
Sbjct: 323 VILIGVIGGTLSQGLLGLFLGPVVLSVFYELLRAW 357


>gi|283787887|ref|YP_003367752.1| hypothetical protein ROD_43431 [Citrobacter rodentium ICC168]
 gi|282951341|emb|CBG91040.1| putative membrane protein [Citrobacter rodentium ICC168]
          Length = 349

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 110/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +    +A++  V 
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRPAAIAIVVVVM 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +       L  L       + E ++ +   N+       +L ++   +       + L  
Sbjct: 73  LFA-----LTALVGVLAASLNEFLAMLPKFNKELTRKLMYLQEMMPFLNLHISPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+S T      +           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKIMSFTTTLMTELSGAMASVVLLVMTVVFMLFEVRHVPYKMRFALHNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L  +   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIIWLGLELMNIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+   ++    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGVYECVLVGALFLVVHMVLGNMVEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|292492865|ref|YP_003528304.1| hypothetical protein Nhal_2852 [Nitrosococcus halophilus Nc4]
 gi|291581460|gb|ADE15917.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 380

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/348 (14%), Positives = 121/348 (34%), Gaps = 10/348 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  ++   +L   Y L+  F P+L A  + +   P++       +        +  + +
Sbjct: 26  VLWILLGVFLLWFGYQLRAIFIPLLLAFALAYLFDPLFRWGERYYKLPRPVTISLILILL 85

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   +  L +L    + +  EL+  +    Q  + +   L  +         W + +   
Sbjct: 86  VVGGMSLLAWLGPELLKQFAELLRGLTHYLQ-ILTLKYDLDPLRTLETQLGKWVQRMEEN 144

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               ++  T +   G         R           I+ +    FF      SI  ++  
Sbjct: 145 PVRFVIENTEILLTGTTQAVTVVGRVLGTTTYMGAMILLVPFYFFFIAWHFGSIMDKIKG 204

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--GVPSHVALGVIT 248
           L           I++ + + + + F G  ++++    +   ++      VP  + LG+  
Sbjct: 205 LIPVKKKEQTLAIAKEMDEAVAAFFRGRLVVSLITAGLFSISWSPLLADVPYWLILGISG 264

Query: 249 AIMAMIPG---GAPISFTAVSIYLLIKGNIFNATCLFLW----GAIELFIVDKTLRPFLV 301
            ++  IP     A ++        +  GN F    + +W      I  FI    L P++ 
Sbjct: 265 GLLNFIPYAAALAWLAALIFKGLEIGFGNGFQLWAVIIWPSLAYGIVQFIDGWLLTPWIQ 324

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G  + L  +     ++ G    G+ GL +   + A   +++ E I+  
Sbjct: 325 GRNLNLSTITVIIVVLIGGTVGGIYGLLLCIPIAACAKILFTELILPR 372


>gi|18310763|ref|NP_562697.1| hypothetical protein CPE1781 [Clostridium perfringens str. 13]
 gi|18145444|dbj|BAB81487.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 345

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMAIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         +   +  +  G++              +     T      +
Sbjct: 94  KEGESFDGLINGIEFFINDLIMKMKFMELGIF-------------DVIEAQVTEKLNILL 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                      + F +  L+   + +  ++F   G  +S +          A  K + R 
Sbjct: 141 VSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNLGRD 200

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +     +
Sbjct: 201 VDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGAIPA 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + +         + L   I   I    + P +    I +  +     L+ G +  GLL
Sbjct: 261 IVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIGGLL 320

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+     +  +I V++ + 
Sbjct: 321 GMVFIVPIAVVIKVLFDDW 339


>gi|256006040|ref|ZP_05430976.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
 gi|255989985|gb|EEU00131.1| protein of unknown function UPF0118 [Clostridium thermocellum DSM
           2360]
          Length = 309

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 95/302 (31%), Gaps = 3/302 (0%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
             K         +  + V+ L  + + F+    +  ++  +S +     +   +   LS+
Sbjct: 9   RLKVLVRGIAITVTYLVVLLLITLIISFIIPELIKSIQVFLSNMGAYIDNFRDLTNELSE 68

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           + G      +    L               T  +  I    +     F    ++++F I 
Sbjct: 69  LLG---LERIDLSSLDKLILEYTNRLGSSLTELMPKIISITTGVLSFFATLVITVVFSIY 125

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L    R      +   +            + R+V  V      G    A   G +    
Sbjct: 126 ILAGKERLIGQCKKVFSTYLPECLYKKGAYVYRVVVDVFNKYIYGQLAEAFILGSLCFIG 185

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
             +      + + V+ A+ A++P          +  LL+  +   A    ++  +   + 
Sbjct: 186 MVIFRFEYALLISVLIAVTALVPYFGAYIGGFCAFMLLLMISPTKAIWFLVYLVVLQQLE 245

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +  + P +VG  + LP +      + G    G +G+  G  +  ++  + +  ++     
Sbjct: 246 NNLIYPRVVGSSLGLPGIWVVLAAIVGAGVGGPIGVLTGVPIATVLFTLLRNDVLRRSGK 305

Query: 353 KE 354
           + 
Sbjct: 306 QN 307


>gi|220906874|ref|YP_002482185.1| hypothetical protein Cyan7425_1453 [Cyanothece sp. PCC 7425]
 gi|219863485|gb|ACL43824.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 384

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 28/344 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +   + I+V + +  G  A    A I                         +   
Sbjct: 21  RYLLLFGCGWAIVVLINYFYGMIALFTIAGIFAALLNYPVVWLSRYL--PRGIAIALTFT 78

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + LF+  +  +    + + + L++ +         +P                     
Sbjct: 79  IAVLLFLGFVTLVGLEVLNQGQSLLANLKDTIADQNILP--------------------- 117

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q L    E       +                  +++IF  +   +   DG  +   L
Sbjct: 118 -FQDLLNRLEINKLIGTLQTGLASGLDIVRNVFSSVMTVIFGAVICLYMLIDGEKLWLSL 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L        + +I     +       G  ++ +         + + GV   + L +I 
Sbjct: 177 LQLLPTASRDRFAQI---FQRSFLGFLRGQLLLMVFLFTTCLVVFTILGVKYALILALIL 233

Query: 249 AIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IPG         V +         +A  + +   + + I D  LRP ++G  ++L
Sbjct: 234 GLVDAIPGIGATLGVILVGLLAAASQGFDSAIQVVVGAIVMIQIQDNVLRPKVMGNALEL 293

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             +  F  L  G R  GLLG+F+   +  +IA+  +      +E
Sbjct: 294 NPVMLFLSLFIGERIAGLLGIFLAVPIAGMIAIWLQTLNQEQQE 337


>gi|22138063|gb|AAM93408.1| cpsX [Streptococcus thermophilus]
          Length = 378

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/368 (13%), Positives = 119/368 (32%), Gaps = 23/368 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFA-----------PVLSALIIGFTSWPIYSSFISKK 55
                +  +++F     +Y                  P L    I F    + S +    
Sbjct: 4   TKNQFIWLVVLFFSCFLIYTYWETVVSICNKIFVASQPFLFGAGIAFVVNILMSFYEKIL 63

Query: 56  ----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
                     +       ++A  ++  +F   +  +    +  +  L+S+   A  + I 
Sbjct: 64  IKFIPFGFITKIKRPVSLLLAFATIGLIFTWVVFTVLPDLIDSINTLISQDRSAINNLIN 123

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                  +   +      T+      S        +     +F+    +      ++  +
Sbjct: 124 WLLKNKSLQKIIQDLGGVTQVRELINSYSAQLLQQIMNGLTNFLTS-LTSLPSTLINLFI 182

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           SI+F    L    + G  +++ +D      +   +  +  I+     + F+  +I A   
Sbjct: 183 SIVFSCYVLVGKEKLGSQVNRLVDVYLG-RYGKTFHYVVAILNNRFHNFFVYQSIEACIL 241

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G +      +   P    + ++    AMIP         +   L++  ++  A     + 
Sbjct: 242 GTLCYIGMRIFNFPYAATISILIGFSAMIPVLGAYIGVTIGTILIMTHSVILALLFVAYV 301

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I        + P++VGG   LP +     +  G    G+LG+ +   + A +  I K++
Sbjct: 302 VILQQFEGNLIYPYVVGGSTGLPVVWVILAITIGSALGGILGMLVSVPVAATLYQIVKDN 361

Query: 346 IMAIKENK 353
           ++  ++ K
Sbjct: 362 VVTREKAK 369


>gi|314923826|gb|EFS87657.1| conserved hypothetical protein [Propionibacterium acnes HL001PA1]
 gi|314966159|gb|EFT10258.1| conserved hypothetical protein [Propionibacterium acnes HL082PA2]
 gi|314982024|gb|EFT26117.1| conserved hypothetical protein [Propionibacterium acnes HL110PA3]
 gi|315090838|gb|EFT62814.1| conserved hypothetical protein [Propionibacterium acnes HL110PA4]
 gi|315095050|gb|EFT67026.1| conserved hypothetical protein [Propionibacterium acnes HL060PA1]
 gi|315104283|gb|EFT76259.1| conserved hypothetical protein [Propionibacterium acnes HL050PA2]
 gi|327328171|gb|EGE69940.1| hypothetical protein HMPREF9341_01223 [Propionibacterium acnes
           HL103PA1]
          Length = 404

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 104/332 (31%), Gaps = 21/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++     ++ L  L+ L    AP+   L +  T++PI++  +   +      A  A  +
Sbjct: 63  VLLTVAAAWLGLSFLHELSSVVAPLFFGLNLLITAYPIHTWLVKH-KCPRWISATTAGTA 121

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    ++ + +     + +L S +    +    +  W + +                
Sbjct: 122 VIVVLAAGVVGMVWSVAAMINQLQSYIPQMEKIYTQLLHWSTQLGYSQEVIA-------- 173

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      LK      +    +            II ++  + F   D   +  +L 
Sbjct: 174 ---------DKLKKIDPQQVMSVVTSVASDTTSVVTMIIVILTGMIFMVMDTPQMHDRLR 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                IR  +L  T+  +   L   +A  + GVP      + + 
Sbjct: 225 MA--GSRKPVVVLALESFASGIRKYWLVTTVFGLIVALFDWAALLIIGVPLAGVWALFSF 282

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    I      ++  L K     A  + +  ++  F++   ++P   G  + L 
Sbjct: 283 LTNYIPNIGFIIGVIPPALLALFKDGWVAAVVVVVSYSVLNFVIQSIIQPKFAGDAVGLT 342

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +F  L+      G LG  I      L+  
Sbjct: 343 PTMSFVSLLLWGWVFGALGTLIALPCSLLVKA 374


>gi|323143756|ref|ZP_08078424.1| hypothetical protein HMPREF9444_01056 [Succinatimonas hippei YIT
           12066]
 gi|322416469|gb|EFY07135.1| hypothetical protein HMPREF9444_01056 [Succinatimonas hippei YIT
           12066]
          Length = 393

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 101/376 (26%), Gaps = 24/376 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R     P       ++  I + +YF      P++ AL + +        F+         
Sbjct: 10  RRHFSVPGAPEFACVLISIFIIIYFFMWLVGPLVVALCLAYCLDGAVCFFMRHLHVGRRL 69

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-------------- 107
            A I     +   ++ L+ +    + +     + ++                        
Sbjct: 70  SASIVMCLFIGAALLALILVVPQIINQGISFYNIILSMGADVSQAISAEAAHSDEFVMSV 129

Query: 108 --------RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                   + + +    +          +   S      + L       +          
Sbjct: 130 KDIDLLITQHIMNFVSTLPDPIPSMVAENTVLSALTSIRSQLMKATAVLMRTQLVPSVFN 189

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
              + + +I + I  F    + +++ +++ +          K+    +   I     G  
Sbjct: 190 AFSWLIYLIIVPIFTFLMLANKYALQKRVLTYILPNRQNIIKEFWPSINSQIAGYIRGKI 249

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFN 277
           +  I   +    A+ + G+     LGV   +  ++P    +      I   LL  G    
Sbjct: 250 VHIIVIAIANTLAFKIMGLNYGTLLGVGVGLSVVVPYVGAVLIGVPVILVALLQFGFSMT 309

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              +     I   +    L P L    + L        ++      G  G+F    L  L
Sbjct: 310 LAWVLGVYVIIQLLDSNVLTPMLFSKALNLDAFSILAAILIFGGLWGFWGVFFAIPLATL 369

Query: 338 IAVIWKESIMAIKENK 353
           I  I      A  + +
Sbjct: 370 IKTIISRWPSADADPQ 385


>gi|307244676|ref|ZP_07526779.1| membrane family protein [Peptostreptococcus stomatis DSM 17678]
 gi|306491927|gb|EFM63977.1| membrane family protein [Peptostreptococcus stomatis DSM 17678]
          Length = 371

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 112/345 (32%), Gaps = 13/345 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVS 69
           I   L  +     P++    I F    I  +   +           +       +++   
Sbjct: 30  IYSLLDKIFTVLNPIILGCFIAFILNIIVENLEKRLLDKVNTKLVRKLKRPISILLSLAF 89

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + ++    +       ++   +         +     LS+    + +  L +     
Sbjct: 90  FLLIILLVSRIIIPQISKFIEVFTNSFPNIYNEIMKFLAGLSNEFPSLQSKLLSSNLD-- 147

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +     L T     I    +    +  +  +++I  I  L          ++   
Sbjct: 148 -AQAILKKLVSLSTTWAGDILNIINSIFSVIANIVIALIIAIYILAGKEGLKSQFARLFA 206

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +         +  + R+     ++ F+G  I AI  G++  +   + G P    +G +  
Sbjct: 207 TFIPQPILDKFYYLLRVTDNTFKAFFIGQFIEAIILGVLCSTGLLILGFPYAFMIGSVVG 266

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + A+IP             +++  N   A    L+  I   +    + P +VG  I LP 
Sbjct: 267 VTALIPIIGAYLGGLFGFLMILSVNPLRAFAFLLFLIILQQLEGNLIYPKVVGSSIGLPG 326

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  F  ++      G+ G+ +G  ++A +  I K+ +   ++  E
Sbjct: 327 IWVFVAIIISGGLFGITGIILGVPIIASMYKILKDYVNKEQKALE 371


>gi|226363607|ref|YP_002781389.1| hypothetical protein ROP_41970 [Rhodococcus opacus B4]
 gi|226242096|dbj|BAH52444.1| hypothetical membrane protein [Rhodococcus opacus B4]
          Length = 374

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/334 (14%), Positives = 105/334 (31%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+    + + +  +       AP+  AL++     P+      K          +AT++
Sbjct: 24  VILGLAALVVTVAGIQVAAPILAPIFLALMLTVAVHPLPVWLHRKGVPP-----WLATIA 78

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +    L+ L     L + +L + +         +                    L+ 
Sbjct: 79  AIVVVNGILVVLVLSLALSVAQLATLLPQYADDFTSLVDSAQ-------------SFLNS 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  ++T L       +           L    +++F+++ L F   DG S   ++ 
Sbjct: 126 HGVNSTDAQTLLSQVDYTKVFGVVDGILQAMLGIFSNLLFILVLLLFMAVDGSSYGSRMR 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                 R   +  T+  +   ++   A W  G+P  +  G+++ 
Sbjct: 186 --FVTQMRPEIATALAAFSVGTRKYLIVTTVFGLIVAVIDTGALWALGIPLPILWGLLSF 243

Query: 250 IMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    +        L + +G       + +  ++   I+   ++P  VG  + L 
Sbjct: 244 ITNYIPNVGFVLGLVPPALLALLQGGPGLMLTVIVVYSVINVIIQSVIQPKFVGDAVGLS 303

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   L  +   + 
Sbjct: 304 VTFTFLSLVFWTWILGPLGAILAIPLTLMAKALL 337


>gi|134094948|ref|YP_001100023.1| hypothetical protein HEAR1742 [Herminiimonas arsenicoxydans]
 gi|133738851|emb|CAL61898.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 387

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 110/337 (32%), Gaps = 14/337 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  +     + +L     FF P++  + I +T  P+       +        
Sbjct: 30  PVNGRSISLTILASVAFVFALSAAHKFFIPLVFGIFIAYTLNPLVVWLERIRIPR----- 84

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-----DIPGGMW 118
           ++ T+ V+   +   L+       E   ++  +  A Q      + L       I     
Sbjct: 85  MVGTLFVIAAILSSALWTANNLRDEFNSILVSLPTATQKLTRSLKHLQKDQTSTIQQMQA 144

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           A+    K  +    ++ L +       +  + ++     M    +   ++ +I  +FFF 
Sbjct: 145 AATEIEKATNQAAGVRPLVKNTAAEQSVFNLSQWLWAGSMGAAAFASQVLMVIFLVFFFL 204

Query: 179 RDGFSISQQLDSLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             G    ++L  +             I   +   I+   L + +  I  GL++  A    
Sbjct: 205 VSGDMFKRKLVKISGRSLSSRKITVNILDAINTSIQHYMLMLLVTNILFGLLMWIALRWV 264

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNATCLFLWGAIELFIVDK 294
           G+ +  A  V    + +IP   P+   A +            +   +     I   +V  
Sbjct: 265 GLENAGAWAVAAGFLHIIPYFGPLLIVAATGVTAFMQFETFSSVLTVAGLTLIIATLVGT 324

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            +  ++ G   K+  +  F  L+      G+ G+ +G
Sbjct: 325 FVTTWMTGRIAKMNTVAVFVSLLFWTWLWGVWGMLLG 361


>gi|218675451|ref|ZP_03525120.1| hypothetical protein RetlG_30796 [Rhizobium etli GR56]
          Length = 301

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 83/260 (31%), Gaps = 8/260 (3%)

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M  F + L+ L    + +  +   ++               +     W          + 
Sbjct: 1   MITFTLALMILIPVLVSQFNDFAERLPGYISQLQQFIDTSKNSLLPEWVRSQAGTIKDNF 60

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +      FL       +       G   +D    ++   +  F+   D   +  ++D 
Sbjct: 61  SGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMISKVDQ 115

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                + A  ++I++ + + I     G   + +  G+   +   L G+   + +G+   +
Sbjct: 116 WIPRDYVADVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLVGLNFGLLIGLFAGM 175

Query: 251 MAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++ IP    +    +S+    +    +      + +      F+    L+P LVG  + L
Sbjct: 176 ISFIPYVGSLVGLVLSVGVAIVQFWPDYPWIGLVLVVFFSGQFLEGNILQPKLVGSSVGL 235

Query: 308 PFLPTFFGLVGGVRTMGLLG 327
             +   F L       G +G
Sbjct: 236 HPVWLMFALFAFGALFGFVG 255


>gi|56552607|ref|YP_163446.1| hypothetical protein ZMO1711 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762148|ref|ZP_04760231.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753738|ref|YP_003226631.1| hypothetical protein Za10_1509 [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56544181|gb|AAV90335.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241373398|gb|EER62998.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553101|gb|ACV76047.1| protein of unknown function UPF0118 [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 372

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 90/324 (27%), Gaps = 20/324 (6%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
           + L+                +    +   I  + V       L    Y    ++  L + 
Sbjct: 54  AGLVFASLLDDGTRLLGRVLKIGRGYRLAIVCICVAIFLAFTLYLAVYQLGGQLDALQAT 113

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +     +          +   + +S++  +                            S 
Sbjct: 114 LTTQFINIRDWLVSNGLMSPHVSSSDIAQRLFGSFGE--------------------VSA 153

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
           F    L        +++   F   +     +    +        + +I  I    +R   
Sbjct: 154 FVGNALGAVSGGAMIMVIGIFVAIEPHLYERGFAWMIPIAKRPDFYRIFNIANNNLRRLM 213

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
            G  +    EG+         GVP    LG++T ++A +P    +    +   +    N+
Sbjct: 214 AGRLLGMAIEGVGTWLLLLATGVPMATLLGLLTGLLAFLPNIGALISGLLICLVGFSQNV 273

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                     AI   I    + P +    + LP        +      G++GL +   L+
Sbjct: 274 QTGLWAMGVYAIVQTIDGYLIVPIVARRSVNLPPALELGAQILLGALFGIMGLALADPLV 333

Query: 336 ALIAVIWKESIMAIKENKEKISSN 359
           A+  V  +E    + E +E    N
Sbjct: 334 AIAKVSLEEYSKIVTEREEHQQRN 357


>gi|113955470|ref|YP_730789.1| hypothetical protein sync_1584 [Synechococcus sp. CC9311]
 gi|113882821|gb|ABI47779.1| Uncharacterized conserved membrane protein [Synechococcus sp.
           CC9311]
          Length = 359

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/315 (8%), Positives = 92/315 (29%), Gaps = 3/315 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    +    +  + L+     + +A+++      +  +   +         ++    ++
Sbjct: 7   LGLCALLATGLLFWSLREVLIHLFAAIVLAMALCTLVGALRQRWNLPRPLALLVCIAGLV 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS---DIPGGMWASELWTKHLS 128
            +  + L  +      + ++L+ ++  A +    +                S      L 
Sbjct: 67  VMVSIGLTVIVPPFTSQFQQLILQLPSAAKALKDLLLQFFSSVSSMVYGSESSSNWSQLL 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P+ L   S      + +                  L ++ +            +     
Sbjct: 127 FPKGLANSSGGPAIASSLTGGLLGLLGLAGNVGSGLLQLLIVFAVTLMVAVQPHAYKNVG 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    +    + I  +  + + +  +G+ I ++   ++ G    L GV   +A  ++ 
Sbjct: 187 IQMLPSFYRRRARVILNMCGEALSNWMIGVLISSVCVAVLAGIGLSLMGVKLVMANALLA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P   T   + + +    + A  +         +    + P ++   + L 
Sbjct: 247 GLLNVIPNVGPTLSTVFPMSVALLDAPWKALAVLGLYIFIQNLESYVITPSVMQRQVNLL 306

Query: 309 FLPTFFGLVGGVRTM 323
              T    +      
Sbjct: 307 PGLTLAAQLVFTVLF 321


>gi|83955633|ref|ZP_00964213.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. NAS-14.1]
 gi|83839927|gb|EAP79103.1| Conserved hypothetical membrane/transport protein [Sulfitobacter
           sp. NAS-14.1]
          Length = 353

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 105/330 (31%), Gaps = 15/330 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++  + V+ YF K    P++   ++  T  P+  +             ++ T + + + 
Sbjct: 2   LVLISLFVTAYFAKDLILPIVLGFLLALTLSPVGRALYRIGVPHPVSAFLLVTATSLVIA 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            V LL      +        ++    +        +S+    M ++    + L      K
Sbjct: 62  AVVLLSAGTVAI-----WSDEIPEMGREIQIKLSGVSNAVETMRSASEEVEKLGTETGGK 116

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  +   +D      S+ G            ++I   F    G     +L      
Sbjct: 117 PQEVVVRQPGLLDTAMDTVSKTGASLA-------VILILALFLLGSGELFYLKLVQSMPT 169

Query: 195 LF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           L            V K +    L +  I    G+++G+   + G+PS    G+   ++  
Sbjct: 170 LTEKKRALHTVYDVEKRVSRYLLTIATINAVLGILVGTYLTVLGLPSAYIWGIAAFMLNF 229

Query: 254 IPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P     +         L+    I  A            +  + + P+LVG  +++  + 
Sbjct: 230 LPYIGGFAGVLLVAGFSLVTFDTIGYAMLAPTGYLTLTLLEGQIITPWLVGRRLEMNTVA 289

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  +V      G+ G  +    + +  V+
Sbjct: 290 VFLTVVFWGWLWGIPGALVAVPFLVVFKVV 319


>gi|289666375|ref|ZP_06487956.1| transport protein [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 413

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 105/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +    +  +L+  +    PV+ A        PI      K        A++     +
Sbjct: 76  MVVLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGL-RKLHIPRFLGALLILCLGL 134

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +   + L        ++   ++    +    + + +                     
Sbjct: 135 AGTVTLAVQLAGPAAEWAQQAPQQMRQIARDVRNLTKPVMQANQVAENFARAAGGEGQRG 194

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 195 VQIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 243

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     +   +P    +  G + 
Sbjct: 244 LANRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYALKIPLPEAILWGTVV 303

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 304 ALLNFAPYVGPLIGVMLMLLMGFVEFRGTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 363

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 364 ISPLMLILALMLFGWAWGMVGLLLAVPLLVCIKMVL 399


>gi|300023545|ref|YP_003756156.1| hypothetical protein Hden_2034 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299525366|gb|ADJ23835.1| protein of unknown function UPF0118 [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 354

 Score =  106 bits (265), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 60/336 (17%), Positives = 135/336 (40%), Gaps = 7/336 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +  +S   +      ++ + I+    +PIY         S  F A   T+  M + 
Sbjct: 22  LLTLLAYLSFAIVAPVLTILVWSAILTVALYPIYRWLAHWL-NSPKFAAAFVTLLCMLVV 80

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           + P+ +L +  +  ++ +V K+          P  + D P                 S +
Sbjct: 81  LAPVTWLGFGLLNGVEVIVQKLDSGL-SIPAPPESIKDWPIAGDQIYRLWTRAITDISSQ 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +            ++ + AS   +  L + LSII       F +  G  + + L  + E 
Sbjct: 140 LAELAPALKPVAGWLLQVASNVLIGLLKFLLSIIVAG----FLFCPGPKLVKVLARIMER 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +      ++  +    IR+   G+  +A+ +  + G  + +AGVP        + ++ ++
Sbjct: 196 VLNPRGTEMVELAGATIRNISRGVLGVALLQSFLGGIGFLVAGVPGAGIFAFASLVLGIL 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  + F  + ++  +     +A  LF    + + ++D  LRP L+   +  P L    
Sbjct: 256 QIGPGVLFLPILVWSWMTQEALHAL-LFTAYMVPIGLLDNVLRPILMTRGLTTPMLVIVI 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G++GG    G++GLF+GP+++++   + +  +   K
Sbjct: 315 GVIGGTIAYGIIGLFVGPIILSVAWELGQAWMNGTK 350


>gi|295687537|ref|YP_003591230.1| hypothetical protein Cseg_0085 [Caulobacter segnis ATCC 21756]
 gi|295429440|gb|ADG08612.1| protein of unknown function UPF0118 [Caulobacter segnis ATCC 21756]
          Length = 366

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/344 (11%), Positives = 101/344 (29%), Gaps = 25/344 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +  +  + +     +LY+++    P+  A+ +            ++        A+ 
Sbjct: 9   STTRNAVVLLAVIASGAALYWMQDILTPLALAVFLAVMVDSFARVLTARVPGFPARAALP 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A V +  L      ++    +   +    ++         +   L+   G   A  +   
Sbjct: 69  AAVVISILLFGVSFWVV---IENGRGFFDQLKDYAPRLNDIIAKLAHAVGIHVAPTIGGL 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                                    R+  +    F ++  S + ++I L F        +
Sbjct: 126 INELNPQ------------------RYIGQAAQSFGNFASSAVLVLIYLGFIIASRRGFA 167

Query: 186 QQLDSLGEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +++ SL           K+ + +   +       T+  +   +   +   L  + +    
Sbjct: 168 RKIVSLFPQHAEREQNMKLFQRIRDGVEQYLWIQTVTGLMIAVAAWAVMMLVRLDNAFFW 227

Query: 245 GVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             +  + A IP            +   +    +++ A  LF       F+V   + P + 
Sbjct: 228 AFLIFLAAYIPILGGAIGCFLPPLFALVQFPESLWPAIILFCALQGIFFVVGNVILPRMQ 287

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           G  + +        L       G+ G+F+   L   + +I  + 
Sbjct: 288 GDSLNMDPTVVLLSLAVWGALWGVPGMFLSTPLTVAVMLILAQF 331


>gi|320103229|ref|YP_004178820.1| hypothetical protein Isop_1687 [Isosphaera pallida ATCC 43644]
 gi|319750511|gb|ADV62271.1| protein of unknown function UPF0118 [Isosphaera pallida ATCC 43644]
          Length = 376

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 32/336 (9%), Positives = 97/336 (28%), Gaps = 18/336 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               +++   +  L    G    +++A+ + +   PI      K    +     +    +
Sbjct: 44  AAGLIVLVASVYLLREFAGLIQQIVTAVFLTYLLNPIRQWLTDK-GLPTWLAITVTLSGL 102

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               ++    L         ++   + + N                        + L   
Sbjct: 103 GLTILMLAAVLQVGLADLSTKMPQYLGILNDKLQRWSES---------------ERLPGA 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + +        ++                  + + ++I L F   +   + +++D 
Sbjct: 148 IREGLAAMLADDRPLLERNLGLVRSALETGFKLVSNAVVVVIYLIFLMAESGGLRRRIDE 207

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                  +  +++   + + +       T ++   G+          +   +  G++   
Sbjct: 208 AMTPERASETRRVLSEINQAVSGYLWVKTFVSAIVGVATTLTAHWYQLDDPLVWGMLAFF 267

Query: 251 MAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +P    +    +   + L+       A  + L   +   +V   + P L G  + L 
Sbjct: 268 LNFVPYLGSLVAIVLPTMLALIKFDTTGPAIQIALILFVVHNVVGYVVEPILTGRRLDLS 327

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                  L       G +G+ +   LM++I +I + 
Sbjct: 328 PSLVIISLGFWAWVWGPVGMVLAVPLMSVIKIIMQH 363


>gi|300932605|ref|ZP_07147861.1| hypothetical protein CresD4_00930 [Corynebacterium resistens DSM
           45100]
          Length = 385

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 12/306 (3%)

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                +        A+++   ++ L  + ++F         + L  K             
Sbjct: 64  QLLTRRLHFPRALSALLSLFGLIGLVALGVVFAVNQFASSYQSLADKAQEGATEVANWVH 123

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
                              S      +   +    +    +   A   G   +D   +I+
Sbjct: 124 -----------DGPLQVPRSDNSHSLVTQISQWAQSNSHSLYSNAVDAGTTTIDTFAAIL 172

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
             +IA FFF  DG  IS+ L  L                   +++      ++A    L 
Sbjct: 173 ICLIATFFFLFDGPKISRFLIGLFPRQSQPDITAAGAAAWSTLKAYARMQIVVASINALG 232

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAI 287
           +G   W+ G P  V +  +  I + +P    +       +   + G + +A  + +    
Sbjct: 233 IGIGAWILGTPLVVPITAVVFICSFVPIVGAVVSGAIAVLIAFVDGGLTHAIIMTIIVIG 292

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             F+    L+PFL+G  +++  L     +  G     L G      + A+I    +    
Sbjct: 293 VHFLETHGLQPFLMGHAVRVHPLAVVVVVAAGTYLFSLAGALFAVPITAMINSSVRAIAA 352

Query: 348 AIKENK 353
             +   
Sbjct: 353 RHQAPP 358


>gi|229589000|ref|YP_002871119.1| putative permease [Pseudomonas fluorescens SBW25]
 gi|229360866|emb|CAY47725.1| putative permease protein [Pseudomonas fluorescens SBW25]
          Length = 356

 Score =  106 bits (265), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 115/349 (32%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ +    + ++   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLE-RLRLPGGA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M L ++ ++ +      ++  L +++         +   L +    + + E
Sbjct: 69  AVGLVFALFMGLLVLFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLQAIEVARGEI--------GKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +         A   +++  + + I +   G  I  I  G V   A+    +   
Sbjct: 181 AMIGRWVRGYLPRE-RALITRVAEEMNRQIANYIRGKVIEIIICGGVTYIAFIALDLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T       L   G       L     I   +    L P 
Sbjct: 240 ALLALLVGISVVVPYVGAVVVTVPVTLIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPRQ 348


>gi|31791383|ref|NP_853876.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 gi|121636117|ref|YP_976340.1| putative transmembrane protein [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224988590|ref|YP_002643277.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31616968|emb|CAD93075.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium bovis
           AF2122/97]
 gi|121491764|emb|CAL70226.1| Probable conserved transmembrane protein [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|224771703|dbj|BAH24509.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 367

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 97/331 (29%), Gaps = 14/331 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    M  +L  L   +    PVL AL++     P      S+          +  +
Sbjct: 23  RFLVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPRAVAVTLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    L F+    +  +  LV++V  +                  W  E       
Sbjct: 82  SGFAVLGGILTFVVSQFIAGLPHLVTEVERSIDSARR------------WLIEGPAHLRG 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N    +   A        +   + + ++  L FF   G SI Q +
Sbjct: 130 EQIDNAGNAAIEALRNNQAKLTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +   R     +        ++A+ +   +G+   + GVP  + L  + 
Sbjct: 190 TKAFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLV 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A IP    +       +  L+   I  A            +    L+P ++G  + +
Sbjct: 250 FFGAFIPLIGAVVAGFLAVVVALLAKGIGYALITVGLLIAVNQLEAHLLQPLVMGRAVSI 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     +  G    G++G  +     A  
Sbjct: 310 HPLAVVLAIAAGGVLAGVVGALLAVPTAAFF 340


>gi|293365480|ref|ZP_06612189.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307703436|ref|ZP_07640378.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|291315848|gb|EFE56292.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
 gi|307622843|gb|EFO01838.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037]
          Length = 364

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 113/347 (32%), Gaps = 1/347 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +     +     L    + ++   +I F              +      +   ++
Sbjct: 17  VALVILNASSFISGAISLFDVTSTLIYGAVIAFVLNVPMKKIEQFLVKMKVKAELCRPIA 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG-MWASELWTKHLS 128
           ++ +F+  +L +    +L +  L   +         V   L  +     + ++     + 
Sbjct: 77  MVLVFLALILIVIGLLVLILPTLSQTISQLGTVLSTVLTKLGKLLDSSEFVTKDMLSTIV 136

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                +  S +      +  +           ++  L I+F    L          S+ L
Sbjct: 137 SGIQGESSSISQALIGFLSGLTSNIGNIFSSLMNAFLIIVFTFSFLSSKEHLAEMTSRLL 196

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L           + ++  +      +   I A+  G+++   Y L G+P  V  G+  
Sbjct: 197 KVLLPEKVVIKLTYVGQVALETYDQFLMSQLIEAVIIGVMVAVGYSLFGLPYGVMTGIFA 256

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +++ IP   P+    V    +   +   A    L   +   I    + P +VG  I LP
Sbjct: 257 GVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSILLYQVIQLIEGNLIYPRVVGQSIGLP 316

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L T      G    GLLG+     + A+I  + KE ++A +   +K
Sbjct: 317 ALFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQLDK 363


>gi|238789129|ref|ZP_04632918.1| AI-2 transport protein tqsA [Yersinia frederiksenii ATCC 33641]
 gi|238722893|gb|EEQ14544.1| AI-2 transport protein tqsA [Yersinia frederiksenii ATCC 33641]
          Length = 357

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 104/343 (30%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      + +   T   V+   
Sbjct: 17  RLVAMLAMLVVIMAGVKAASPIVVPFLLAIFLAIVLNPLVKLLQ-RIKIPRTLAIVLLVT 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L  +    L        + L     +  +    +  +           ++      
Sbjct: 76  IIVLLMALLFSRLGSSLNEFARSLPQYRGMMLEKMRDLQEFSMRFNIEFSVDDIMKHVDP 135

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S   +++ + F   +   +  ++
Sbjct: 136 ------------------STAMNFITRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKM 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  P     I +     +    +  TII+I  G+V+       GV      G++ 
Sbjct: 178 QLMFDN--PEQGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLA 235

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 236 FVLNYIPNIGSVLAAVPPIIQALLFNGFADAFAVTCGYILINLIGGNIIDPRMMGRGLGL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  +  + +    K
Sbjct: 296 STLVVFLSLIFWGWLLGPIGMLLSVPLTIIAKIALELTPAGYK 338


>gi|297626025|ref|YP_003687788.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921790|emb|CBL56350.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 424

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 105/344 (30%), Gaps = 24/344 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESS 59
           +    P+  + ++ M  I  S++  +      APV   L +    +PIYS    + +   
Sbjct: 74  QPRWLPRMSVIFIAMIGIAGSIWLFRQLSWLLAPVFLGLNLVIAFYPIYSGLTRR-KWPR 132

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A++  ++++ + I+ +  + +     +  + S V         + ++L        A
Sbjct: 133 ALAAIVMALALLSVVILAVASMAWAVGTLIGAIPSYVPRIQAMYGDLMQFLVQHHISADA 192

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
              +   +             + +     +   +   G   +     ++ ++ ++ +  R
Sbjct: 193 VSGFYSRID---------PNNVLSALTGVLGSISGSIGAGTVALTTILMLLVDSVGWKRR 243

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G             +         R      R  +L   +       +      +  VP
Sbjct: 244 LG----------MVEVGHPRAIGAIRDFAHGTRRYWLVSMVFGAIMAGLNAIELKILNVP 293

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
                 V+T I   IP            I  L+     NA  L     +  +IV    +P
Sbjct: 294 LMGVWVVLTFITTFIPSVGFFFAMVPPVIVALVVNGWQNALWLMAIYFVTTWIVQGFFQP 353

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              G  + +    +F  L+      G LG  I      L+  + 
Sbjct: 354 KFTGNAVGVNITTSFISLLFWAWVFGPLGALIALPATQLVKSLV 397


>gi|237756275|ref|ZP_04584832.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691557|gb|EEP60608.1| putative membrane protein [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 355

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 70/329 (21%), Positives = 138/329 (41%), Gaps = 4/329 (1%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F   +  ++++    +PI+     K  ++S   ++I+T  ++   ++P   + ++   
Sbjct: 29  APFIGIITVSILLVVIFYPIHQKIS-KIVKNSVLNSLISTFIILTTLLLPFSLILFFLTK 87

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHLSHPQSLKILSETFLKTNGI 146
           E+ EL   +     +   +   L + P       +L   +L+   +    S         
Sbjct: 88  EIIELYPLIADYITNPNLIVEKLKESPYLYKLYLKLQEFYLNKLDNNFHDSIINYLKQFT 147

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +  FA  F    +   ++I  M I +FF ++DG+ +   + S+   L       +   
Sbjct: 148 AIMFNFAKTFLSNIILIFIAIFIMAITIFFLFKDGYKLYNLVYSIIP-LEKEEKDYLFSN 206

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAV 265
               +++  LG   +AI + +     + +AGV   + L  +T   A IP G   + +  V
Sbjct: 207 SYAAVQAVILGSVFVAIAQAIASLIGFLVAGVEYSLVLTFLTFFAAFIPFGGASLVWVPV 266

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +IYL++   +       L+G   +  VD  +RP +VG  I +  +  FF ++GG+ T G 
Sbjct: 267 AIYLIVSKGLLVGILFTLYGTFVISTVDNIIRPIVVGTKIDMHPMIMFFAIIGGLSTFGF 326

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LG+FI PV++ALI               E
Sbjct: 327 LGIFIAPVIVALIDAFIMLYKKRYGIENE 355


>gi|88704256|ref|ZP_01101970.1| Integral membrane protein [Congregibacter litoralis KT71]
 gi|88701307|gb|EAQ98412.1| Integral membrane protein [Congregibacter litoralis KT71]
          Length = 382

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 49/339 (14%), Positives = 122/339 (35%), Gaps = 4/339 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   ++   ++  +     F   +L  +I+  + +P++ +   +    +   A    +  
Sbjct: 21  IRLGLVFVGVVACVEVFAPFMPIMLWGMILAISLYPVFGALRGRTGWGAGSTASFIVILG 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L  VP + L       + +++                + + P                
Sbjct: 81  ILLLGVPTVLLGSSFATHIFDVIGDFDAQAVTVRLPDPSVKEWPIIGEHVYEAWSQAHED 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + S      N      R A+      L +  ++I   I + +      ++++    
Sbjct: 141 LPAYLESLQPQLGNFSKAALRSAASTAGTLLFFFGALIIAGIMMAYGESGNAAMARIFSR 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +           I+ +    +RS   G+  +A  + L+LG  + +AG+P+   L ++  +
Sbjct: 201 MVGEQRGPGLHSITTL---TVRSVATGVVGVAFIQALLLGVGFMMAGIPAAGLLALVVLV 257

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + ++   A +       Y+   G+       L     +     D  L+P L+G  + +P 
Sbjct: 258 IGILQLPALLVSLPAIAYVWGMGDGSTVVNILLTVYFVVAGFADNVLKPMLLGRGVSVPM 317

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                G +GG+   G++GLF+G V++++   ++   +  
Sbjct: 318 PVVLIGALGGMMGAGIVGLFVGAVVLSVGYELFMSWVDE 356


>gi|218462338|ref|ZP_03502429.1| putative transmembrane protein [Rhizobium etli Kim 5]
          Length = 508

 Score =  106 bits (264), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 78/281 (27%), Gaps = 17/281 (6%)

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                    + E+         + I   R L +           T  +         +E 
Sbjct: 5   LFGLVVAGHVAEVAQIFPAYQGNIIAKIRSLQESGTDSGIVRRLTSVIESVGRELSNAEE 64

Query: 140 FLKTNGIDF---------------IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                G                       +      L    S+  +I+ + F   +   +
Sbjct: 65  RPVAPGTGSRPREPVLVEIFAPSRPIETLTSLIGPLLGPIASLGLIIVVVIFMLLEREEL 124

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +   L  +       +  +     +    L   ++    G+ L    W  G+P+    
Sbjct: 125 RDRFIRLVGYGDLHRTTEAIQEAGSRVARYLLMQLVVNCAYGVPLALGLWTVGIPNPALW 184

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVG 302
           G++  ++  +P   P+  T + ++L    +        +     +     +  + P+L G
Sbjct: 185 GMLAIVLRFVPYIGPVIATVLPLFLAFAVDPGWSLVLWVAAIFVVLELTSNNVIEPWLYG 244

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               L  L      +      G +GL +   L   +AV+ +
Sbjct: 245 SRTGLSPLAIIVAAIFWAWLWGPVGLVLSTPLTVCLAVLGR 285


>gi|237749032|ref|ZP_04579512.1| predicted protein [Oxalobacter formigenes OXCC13]
 gi|229380394|gb|EEO30485.1| predicted protein [Oxalobacter formigenes OXCC13]
          Length = 359

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 107/328 (32%), Gaps = 11/328 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
            P ++  I+ +   P+     S +            VI  + ++ L     L +    + 
Sbjct: 33  TPFIAGAILAYALNPVVDWLRSLRIGSFRIPRLASVVIVVLFLISLVTTFALIMIPMLLK 92

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           E   L  ++                 P             +  + +              
Sbjct: 93  EWPILYEQIPAFVAKVSNHLN-----PVLNEIGIQMPVDNAGVKKILTEQFFPKGDGVWK 147

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +   A   G   L +  ++I + + LF+   D   ++++L  +    +     +    V
Sbjct: 148 SLIASAKFGGTAVLTWAWNLILIPVVLFYLLLDWHILTRKLRDMIPRRWVGKTIRFCHEV 207

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             ++     G  ++ +   +    A  LAG    + +G++T +MA +P         ++I
Sbjct: 208 NTMLAQYLRGQLLVMLILSIYYSLALALAGYNVALPVGIMTGLMAFVPYIGICIGLFLAI 267

Query: 268 Y--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              L+    +     L +            + P LVG  I+L  L   F L+   +  G 
Sbjct: 268 TATLVQFSGMEAWVTLGIIYGFGYSFDGLLMTPKLVGDRIQLHPLFVIFALLAFAQLFGF 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENK 353
           +G+ +     A+++V +K       ++ 
Sbjct: 328 VGILLALPSSAILSVAYKHLRALYLDSN 355


>gi|303247512|ref|ZP_07333784.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491208|gb|EFL51100.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 373

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 49/338 (14%), Positives = 105/338 (31%), Gaps = 7/338 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   + +  W   F ++  L    G F  V    I+ F       +   K +   T  
Sbjct: 7   QFLRTNKTLAIWAAFFGLVW-LANFYGLFGLVFITYILCFLFNGPIHALAVKTKLPRTLW 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +  +  + + +  +  +      E    + K+    +         + +   M A   
Sbjct: 66  ATLVYIVFVSVALTLVSSVLPKLGSESTSFLKKLPDTLETLRGHLDNWAWLAPDMAAPIA 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K     ++L  +    L T  ++   + ++      L    S + M+       +   
Sbjct: 126 KIKDYLSIEALVGVKAQTLFTIAVNSFNQISTYVSTFLLGTLFSFLIMLDFPNLRAKTIS 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +L  + +    +           V+   F    +IA    ++      + G+   +
Sbjct: 186 LRESRLRDIYDVTARS-----VVRFAVVVGMGFRAQMLIAAVNTILTAIGMHILGIEPVM 240

Query: 243 ALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L  +     +IP     IS   + +  +      +A    +   I   I    L P +V
Sbjct: 241 LLSTVVFFCGLIPVLGTFISSAPIVLVAVNTTGPHHALWAIVMIIIVHTIETYILNPRIV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               K+  L T   L  G +  GL G+ +G  +   I 
Sbjct: 301 AAMFKISPLVTLMILYVGHKLFGLWGMVLGVPVSVFIF 338


>gi|218247850|ref|YP_002373221.1| hypothetical protein PCC8801_3084 [Cyanothece sp. PCC 8801]
 gi|257060829|ref|YP_003138717.1| hypothetical protein Cyan8802_3036 [Cyanothece sp. PCC 8802]
 gi|218168328|gb|ACK67065.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
 gi|256590995|gb|ACV01882.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 363

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 63/347 (18%), Positives = 131/347 (37%), Gaps = 5/347 (1%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++I F++      ++ F   +L  +I+    +P++    ++          I  +  + 
Sbjct: 17  LFLIGFLLSWCFALVRPFIEIILWGIILAIAIFPLFLWLKARIGGRGKLAGTIIILLGVS 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + I P+  +    +  ++ + + +   +    P P  ++  P          +  S    
Sbjct: 77  VIIGPVSVIATVFVNNVETVTNSLASGSLAVPPPPEGVAKWPVIGQYVNRIWQSASVNLI 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +        +    +   A+  G++ L + +SII   I +          SQ +  L 
Sbjct: 137 TVLSQFRPQLEDLATKLVFLAANMGLLLLKFIVSIIIAGILMINAQGLNRRASQVILRLT 196

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   +    +    IRS   G+  +AI + L++     +A +P    L +++ ++ 
Sbjct: 197 P----QQGQGFLELATATIRSVTRGIIGVAILQTLLIALGLMVAKIPFAGLLALLSLVLC 252

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +I  G  I      IY         A    LW  +   +VD  L+P L+   + +P L  
Sbjct: 253 IIQIGPGIVVLGCIIYAWSTMGTLGALLFTLW-MVPTTLVDNVLKPILMAQGLPVPTLII 311

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++GG    G+LGLFIGPV+++L   +    +         IS  
Sbjct: 312 LIGVLGGTLVHGILGLFIGPVILSLGYQLIVAWVNQESVVISTISEE 358


>gi|296105169|ref|YP_003615315.1| hypothetical protein ECL_04839 [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059628|gb|ADF64366.1| putative membrane protein [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 349

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 108/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + F+ +          +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFLRRGISRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  LF      + E  + +   N+        L ++   +       + L  
Sbjct: 68  VVIVMLIALTALFGVLAASLSEFSTMLPQYNKELTRKIVALQEMMPFLNLHISPERMLRR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI++       G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSEKIMTYATTLMTGLSGAMASILLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +  GV+  
Sbjct: 188 RAL----------------KGVSKYLALKTLLSVWTGVIVWLGLMLMGVQFALMWGVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     +S     I   +    +    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVLSAVPPMIQAFLFNGFYECMLVGALFLVVHMVLGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|223936540|ref|ZP_03628451.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223894704|gb|EEF61154.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 632

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 99/345 (28%), Gaps = 21/345 (6%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + I++ +LYF +  F P+  AL+  F   P+              + V+  +S   + 
Sbjct: 2   LAVVIVVAALYFARKVFVPLALALLFSFLLGPLVIHLRRWHFGRLHSVLVVVVLSFSLVG 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +  L  F     +  +++ K+    ++             G ++    T          
Sbjct: 62  AIGALMFF-----QTADVIRKLPQYQENIHKKLLSFHIGQEGKFSRINRTIAEFQKDITP 116

Query: 135 ILSETFLKTNGID--------------FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +                          +     L   ++   ++  + F   +
Sbjct: 117 PPGIQPQQPQPAGTQKPVPVEIKGGTLSPVEVIQKIMGSLLGIAINAFVVVFFVIFMLME 176

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +L  +          ++     + +        ++    G++ G   +  G+P+
Sbjct: 177 REDMRDRLIRMIGTGKLNTTTQLLDDAGQRVSRYLRVQLMVNATYGILAGIGLYFIGIPN 236

Query: 241 HVALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +  G++  I   IP            ++ L +                    V   L P
Sbjct: 237 ALLWGLLAGIFRYIPYAGIWVAVTMPFALGLAVDPGWTKPLLTIGLFGALELTVANLLEP 296

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +L G    +  L   F  V      G +GL +   L   +  + +
Sbjct: 297 WLYGTSTGITPLAVLFAAVFWTWLWGPVGLLLSTPLTVCLVTMGR 341


>gi|90416228|ref|ZP_01224160.1| putative membrane protein [marine gamma proteobacterium HTCC2207]
 gi|90331953|gb|EAS47167.1| putative membrane protein [marine gamma proteobacterium HTCC2207]
          Length = 360

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 106/322 (32%), Gaps = 23/322 (7%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L        P L A+ I     P+ S       ++ +  + IA + ++ L ++  L L 
Sbjct: 24  GLKMAGELLVPFLLAVFIAMIVSPLLSWL-----KNRSIPSAIAILMIVVLIMLVGLMLT 78

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                 ++     + L ++    +             ++ W          +    +F  
Sbjct: 79  AVIGSSVENFRQDIPLYSEKLSAM----------SVGAQSWLSLRGVDIDPQQWQNSFDP 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +  + F     + FG +  +  + ++ +I  L      G  +                ++
Sbjct: 129 SVVMSFAGSTLASFGSVMTNAVMILLTVIFILTENVGFGEKLRMA-------RGKDVSEE 181

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
                 + + S     T I++  GL++     + GV   V   ++  ++  +P       
Sbjct: 182 WLNRFSESVHSYLAIKTGISLVTGLLIFIWLSILGVDYPVLWALLAFLLNFVPTVGSFIA 241

Query: 263 TAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              ++ L      +F+A        +   ++   + P  +G  + L  L  F  LV    
Sbjct: 242 AVPAVLLATVQLGVFSAGLTLAGFVVVNLVMGNAVEPRWMGKGLNLSPLVVFVSLVLWGW 301

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
            +G +G+ +   L  +I +  +
Sbjct: 302 VLGPVGMLLSIPLTIMIKIALE 323


>gi|169349890|ref|ZP_02866828.1| hypothetical protein CLOSPI_00629 [Clostridium spiroforme DSM 1552]
 gi|169293458|gb|EDS75591.1| hypothetical protein CLOSPI_00629 [Clostridium spiroforme DSM 1552]
          Length = 300

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 91/288 (31%), Gaps = 3/288 (1%)

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH--- 126
           ++ L  + +  +    +  +  LVS +     + I     +       +  E        
Sbjct: 1   MISLLGLIVSIIIPNLVESLISLVSNISSFLVNIIDNIDEIFKYLNIDFRMEDIGSIKDL 60

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           ++ P          + T     I   A+ F   F        F +  L    +    + +
Sbjct: 61  INMPWQETFSHILNILTKSAGGIMANATNFLAKFGAIFSGFTFSLYLLGDKEKFILQLRK 120

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++  +              ++      G    A    ++  +   L G P    +  
Sbjct: 121 IIGAIFGYQITKIIFNYGHRTNQIFSDFIGGQLTEACILWILYYTTMRLFGFPYPELIAT 180

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I A+   +P   PI+   V  +L++  +   A    ++  I   I D  + P +VG  + 
Sbjct: 181 IIALFCFVPFFGPIASMFVGAFLILSKDSLMAIWFIIYFQILSQIEDNFIYPKVVGNSVG 240

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           LP +     +       G+ G+ I     A +  + +  +    + ++
Sbjct: 241 LPGIWVLLSIFAFGDLFGIFGMVIAVPSAACLYALIRGLVNKALKKRK 288


>gi|301169043|emb|CBW28640.1| predicted inner membrane protein [Haemophilus influenzae 10810]
          Length = 348

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 112/344 (32%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+      ++     
Sbjct: 1   MQNNLNLHRTLLGIASVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKGMTQRRIPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L  L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLAGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S          ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAVKEERHIDRVLQGVIGYLGIKSITSLLTGVGIFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|294339618|emb|CAZ87977.1| putative permease [Thiomonas sp. 3As]
          Length = 352

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 50/354 (14%), Positives = 107/354 (30%), Gaps = 8/354 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T      ++  +I  + L  ++ L     P L  L + +   P+      ++     
Sbjct: 1   MLLTPPVKNALIWLVIGLVALWLIWLLGSILMPFLVGLTLAYVLHPLVERL-KRRRIPRA 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A  A +  + LFI   L L       +  +  K  L  Q  I         P      
Sbjct: 60  LGAAAAIIVAIGLFIGLFLLLVPVVTEIVPLIREKFPLLLQTIINW-----GTPLLARFD 114

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  +  Q       +    +    + R AS  G+  L    ++  + +  F+   D
Sbjct: 115 IHVKFDTASVQQTLSKYLSAHGEDWAGLLLRSASTGGISLLVLLGNLTLIPVVAFYLLLD 174

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                 ++  L                  ++     G  ++ +           +AG   
Sbjct: 175 WTPTLVRIRGLIPPKHRDAVLSFFHDCDVILGQYLRGQLLVMLILAFYYSLGLVIAGFNL 234

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRP 298
            + +G+ T +   +P         +++        + +    + +   I   I    + P
Sbjct: 235 ALPVGIFTGLAVFVPYVGFGLGLLLALLAGALQFLSWYGVISVAIVYGIGQLIESMYITP 294

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             VG  I L  L   F L+      G  G+ +     A++ V+ +  +   +++
Sbjct: 295 KFVGESIGLHPLLVIFILLAFGTLFGFWGILLALPAGAVLLVVVRRLLAWYRQS 348


>gi|16272290|ref|NP_438502.1| hypothetical protein HI0338 [Haemophilus influenzae Rd KW20]
 gi|260581196|ref|ZP_05849015.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
 gi|1176280|sp|P44646|Y338_HAEIN RecName: Full=UPF0118 membrane protein HI_0338
 gi|1573307|gb|AAC22000.1| conserved hypothetical transmembrane protein [Haemophilus
           influenzae Rd KW20]
 gi|260092121|gb|EEW76065.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
          Length = 348

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 114/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S    +     ++    V + +       +I ++  G+ +        V  
Sbjct: 168 KHKFAMVISSTPHDVAKE--ERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACRVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|125974914|ref|YP_001038824.1| hypothetical protein Cthe_2429 [Clostridium thermocellum ATCC
           27405]
 gi|256003829|ref|ZP_05428816.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|281418620|ref|ZP_06249639.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
 gi|125715139|gb|ABN53631.1| protein of unknown function UPF0118 [Clostridium thermocellum ATCC
           27405]
 gi|255992167|gb|EEU02262.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 2360]
 gi|281407704|gb|EFB37963.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum JW20]
 gi|316939125|gb|ADU73159.1| sporulation integral membrane protein YtvI [Clostridium
           thermocellum DSM 1313]
          Length = 356

 Score =  106 bits (264), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 98/331 (29%), Gaps = 2/331 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+ + ++F I + + +      P L A+II   + P+ S   +K   +    +VI+ +  
Sbjct: 17  ILAFTLLFAIYIIMNYFLALILPFLIAVIISSVNEPVISYMETKLRLNRKIASVISIIMT 76

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + I+ +    +    E+ +L S +    +          D     +            
Sbjct: 77  VSIIIILISLCIFKVYYELVKLNSNLPYYMESFSATASACYDRMSVFYYHLPKGLADILE 136

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            + K L            I               +     +++ +F   D   I   +  
Sbjct: 137 NNFKSLLPK--LETITGKIAESIISSIASIPKAAVFTAVTLLSSYFISSDRKKIRNFIYR 194

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                    +  I       I        I+     +       +      V +G I AI
Sbjct: 195 QLPVNLKQGFIGIKSDAISTIAGYIKAQLILMSITFIETTLGLIVIKCEYAVLIGFIAAI 254

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
              +P           I   I               +   I+ + + P +V     +   
Sbjct: 255 ADALPIVGTGIVLFPLIGWNIITGNIQIALGITAVYLLGVILRQIIEPKIVSSQTGIHPF 314

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            T   +  G+   G  GLFIGP+ + ++  +
Sbjct: 315 ATLVSMYLGMTLFGFPGLFIGPIFVTILKSL 345


>gi|295090747|emb|CBK76854.1| Predicted permease [Clostridium cf. saccharolyticum K10]
          Length = 356

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 38/351 (10%), Positives = 103/351 (29%), Gaps = 13/351 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +    + ++   +   + VS  +    F P  +A +      P  +    + +       
Sbjct: 5   SRKQRKALVVIAVTAGVYVSFKYFLPLFLPFAAAYLTALILRPTAAWLERRLQFRLFGRR 64

Query: 64  VIATVSVMCLF---------IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
               + ++               L +       E  ++ +++             +    
Sbjct: 65  FSVPIGMIGGIELVLLTALLGAALFYGGRRLFEEANQIANQIPAWIDSFDHWLTSMCRQV 124

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                        +  + L   +    K      +    + F           +F I ++
Sbjct: 125 EAFCRLRDGVLVQAAREMLLQAASALKKMTMSTLVVNSVAAFTFCVEVMVAVAVFFIASV 184

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                      ++  S+    F  + +++         +      II      +      
Sbjct: 185 LSLQEMDELRRRRRQSMFSREFALFSRRLVM----TGNTWLRTQLIIMFITSCLCILGLV 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +   P  + LG+   I+  +P     +       +L+    +    +     +   +V +
Sbjct: 241 MIRNPYCILLGLGIGILDALPLFGTGAVLVPWSLILLVQKQWYEGIVLAGLFLVCCLVRE 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L   L+G  + L  L T   +  G++  G+LG+ +GP+ + +I  + +E 
Sbjct: 301 FLEARLMGDGMGLSPLETLAAIYVGLKLFGILGVLLGPIGLLIIEDLVEEY 351


>gi|21958543|gb|AAM85307.1|AE013777_6 putative transport protein [Yersinia pestis KIM 10]
          Length = 361

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 106/343 (30%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      + +   T   ++   
Sbjct: 21  RLVAMLAMLVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKLLE-RIKIPRTLAVILLVT 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++    L        + L     +  +    +  +           ++      
Sbjct: 80  IIILLMVLLFGRLGSSLNEFARSLPQYRGMMLEKMRDLQEFALHFNIEFSVDDIMKYVDP 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S   +++ + F   +   +  ++
Sbjct: 140 ------------------SMAMNFVTRLLSHLSGAMTSTFLLLMTVVFMLFEVERMPYKV 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  P     I +     +    +  TII+I  G+V+       GV      G++ 
Sbjct: 182 QLMFDN--PEKGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLA 239

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 240 FVLNYIPNIGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGL 299

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  ++ + +    +
Sbjct: 300 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIAKIVLELTPAGYR 342


>gi|283797416|ref|ZP_06346569.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
 gi|291074773|gb|EFE12137.1| sporulation integral membrane protein YtvI [Clostridium sp. M62/1]
          Length = 379

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 117/349 (33%), Gaps = 6/349 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M E     + I+  +I    +  + F    L GFF P +   +I   + P+      +  
Sbjct: 1   MEEAKRYLRTILNILIPLTGIYLVCFWGPKLLGFFIPFVIGWVIALIANPLVRFLERRMR 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI--P 114
                 + +  V V+ L I+ L  +      E+++ +  +    ++     +   +    
Sbjct: 61  IVRKHGSALIIVGVLALIILLLYLVIGKLYTELRDFIGALPALYENAALEIQGALENGGR 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              +  + + + ++            + +         A        +  ++ +  I++ 
Sbjct: 121 LFEFLPDEFQETVARVTENLGSYMGQIVSKAAAPTVEIAGNVAKGIPNALVNTVITILSA 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           + F  +   + + +  +       Y   + +    +I   FL    I      +L   + 
Sbjct: 181 YIFIAEQDRMMEWMRGILPEFILRYIAYLKKDAKGLIGGYFLAQFRIMFVVAAILAVGFL 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              V   + L V+ AI+  +P     +       + +    +      L   +   +  +
Sbjct: 241 FLHVSYGLVLAVLIAILDFLPVFGTGTALFPWAAVKLFTGDYGYAAGLLILYVVTQVARQ 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            ++P +VG  + LP L T   L  G +  GL G+ +   +  +    +K
Sbjct: 301 LIQPKIVGDSMGLPPLMTLLLLYLGFKVKGLAGMILAVPIGLIFINFYK 349


>gi|89894517|ref|YP_518004.1| hypothetical protein DSY1771 [Desulfitobacterium hafniense Y51]
 gi|89333965|dbj|BAE83560.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 357

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 116/341 (34%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  +   +I +  Y+    FAP + AL+      P     +   + +    A I+   
Sbjct: 14  TLLVIIAFILIPLVAYYALPHFAPFIFALVFALLLEPFNQWLMKWPKINRPVAANISYFV 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +  F++   FL      E  EL+  +     +        +     +            
Sbjct: 74  FLGGFLLLAYFLITKITSEAYELIKFIQRNIPNIQFWFNDANQRINELIMVLPPEMVAQI 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q++   +      N +                + ++++   IAL+    +   ISQ+  
Sbjct: 134 NQTITGFANQLSSINLLSTWGAQTISITASIPIFFITLLIFFIALYMINLNLHHISQRFF 193

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S  +         +   +            +++    +V      +  +   + L ++  
Sbjct: 194 SYFKKESKPKAIAVLSDLRNATIGFLKAQVVLSTFTYIVSLGGLLILDMRYALVLALLIV 253

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ ++P     S       +LI      +    +   I + ++ K + P ++G  I L  
Sbjct: 254 IVDILPILGTGSVLVPWGIVLITLGDIFSGLGLILLFIVITVLRKIIEPKILGERIGLGP 313

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L T   +  G + MG+LG+F+ P+L+     + K  ++  +
Sbjct: 314 LSTLISIWVGFKVMGVLGVFLAPLLIIFYKALVKAKVIQYR 354


>gi|88856087|ref|ZP_01130748.1| integral membrane protein [marine actinobacterium PHSC20C1]
 gi|88814655|gb|EAR24516.1| integral membrane protein [marine actinobacterium PHSC20C1]
          Length = 388

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 103/341 (30%), Gaps = 19/341 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +++  +  LK    P L A++IG    P+       +            +
Sbjct: 38  RLLVILGLIAVLIYLIITLKYIVIPFLVAVLIGALLVPLVQFLERHRWPK-WLAVTATLI 96

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +    ++ +     L +  L  + + A +                  S+   +   
Sbjct: 97  GFFAVVSGLVVVVVSQVRLGLPSLQQQSIAAFETFRTFL------------SDSPLQVTD 144

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   T +       +       G          +  + A  F   DG  I    
Sbjct: 145 EDIDSLLAQITGVIQRDSQALVSGVLSVGSTAGHVLAGTLLTLFATIFVLIDGKRIWAWT 204

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-----PSHVA 243
             L      +      +     + +       +A  + + +G   W+ G+     P  + 
Sbjct: 205 VRLFPRRARSAVDGSGQAGWITLTTFVKVQIFVAAVDAVGIGLGAWILGLFYGGFPLVIP 264

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + V   + + IP     I+        L+      A  +     +   +    L+P ++G
Sbjct: 265 IAVAVFLGSFIPVVGALITGVLAIFIALVFLGPIPAVIMLGIVLLVQQLEGHILQPLIMG 324

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             +K+  L   F +  G    G+ G      L+A++ V+ +
Sbjct: 325 TAVKVHPLAVVFAVAAGSFIAGIAGALFAVPLVAVVNVMTR 365


>gi|255536614|ref|YP_003096985.1| hypothetical protein FIC_02490 [Flavobacteriaceae bacterium
           3519-10]
 gi|255342810|gb|ACU08923.1| membrane protein, putative [Flavobacteriaceae bacterium 3519-10]
          Length = 367

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 139/352 (39%), Gaps = 20/352 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              Q  +  +I+ +  +  Y L  F   VL A+ +   S         +KE      + +
Sbjct: 19  KIKQIFLLAVILLLAGIICYHLALFIPAVLGAITLYIISRKYNIYLQEEKEWKPWAASTV 78

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V+ + + I+P+ F+    + ++    + +   N     +  ++         S+    
Sbjct: 79  IIVATLIILILPIYFIGDLLIEKLGNASAYMQKFNVFVDKIHDYVYSKTKIDVLSKDNLN 138

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L                N +  +                     +  + +F  +   + 
Sbjct: 139 KLKDSVGKYSTLALSSTFNTLTVVAS-------------------MYFILYFMLEKPRLF 179

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++L      L  +    +   + K++ +  +G+ ++AIG+G+V    Y++   PS + L 
Sbjct: 180 ERLVKSSAPLKKSNINLLGDKIRKMVIANAIGIPVVAIGQGIVAVIGYFIFDAPSAILLF 239

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +TA+ +MIP     I +  V I+++ +GN      L  +  + + + D  LR  L+   
Sbjct: 240 ALTAVASMIPIVGAAIVYVPVCIFMIAEGNTGQGLGLAAYCMVAVGLTDNLLRFTLLKRL 299

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             +  L T FG++ G++  G +GL  GP+L+++  ++ +       E++ ++
Sbjct: 300 ENIHPLNTVFGIIVGMKIFGFMGLIFGPILVSITVLLIQVYRDEFSEDENEL 351


>gi|75906781|ref|YP_321077.1| hypothetical protein Ava_0558 [Anabaena variabilis ATCC 29413]
 gi|75700506|gb|ABA20182.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 362

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 109/323 (33%), Gaps = 12/323 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           ++++ V   + +  F  +  A I+ F        F   +  + T   VI  +  + LF +
Sbjct: 24  VWLLSVLFRYFQSPFTILSLAAILAFLLNYPVKFFERAR-ITRTQAVVIVLLVTLTLFGI 82

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L    + +  +L++K+                            + L     +   
Sbjct: 83  LAVTLVPMLIDQTVQLLNKIPDWLTASQANLEHFERF--------AKQRRLPLDLRVVSN 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  + +  +   A       L   L+ I +++  F+    G  +   L +L     
Sbjct: 135 QINASIQSVVQQLASGAVGLAGTLLSGLLNFILVVVLAFYMLIYGDRVWYGLMNLLPSKI 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                K  ++     ++ FL   ++ +   + L   + +  VP  +   ++  I  +IP 
Sbjct: 195 RLPLTKSLQL---NFQNFFLSQLLLGLFMIVALTPIFLILKVPFALLFAILIGISELIPF 251

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                   +   L++  N + A  + +   I   I D  L P L+G  I L  +  F  +
Sbjct: 252 IGATLGIGLVTILVLLQNWWLAVQVAIAAIIMQQIKDNLLGPKLLGNFIGLNPIWIFVAI 311

Query: 317 VGGVRTMGLLGLFIGPVLMALIA 339
           + G    GLLG  +   +   I 
Sbjct: 312 LMGYEIAGLLGTLVAVPIAGTIK 334


>gi|33602293|ref|NP_889853.1| hypothetical protein BB3318 [Bordetella bronchiseptica RB50]
 gi|33576732|emb|CAE33810.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 360

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 121/339 (35%), Gaps = 4/339 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +I  + +      + F   +L ++I+  T  P++              AV+ T++
Sbjct: 21  AIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLA 80

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            M + +VP   L       +  +              P ++ ++P               
Sbjct: 81  TMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMT 140

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +            ++    +  G+    +  SI    + L +      +      
Sbjct: 141 NLQDVLKPLQPHLATAGRWLLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGV 200

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +     P     ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  
Sbjct: 201 RIAG---PEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVAL 257

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ ++     +    + +Y+ +      A    +W  +   + D  L+P ++   + +P 
Sbjct: 258 LICIVQLPLFLLMVPMVVYVFLNNTPTVAAVFAVWCLLV-SLCDNVLKPLMLARGVDIPI 316

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                G +GGV   G++GLF+G V   L  V++ + +  
Sbjct: 317 PVILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQ 355


>gi|289209220|ref|YP_003461286.1| hypothetical protein TK90_2059 [Thioalkalivibrio sp. K90mix]
 gi|288944851|gb|ADC72550.1| protein of unknown function UPF0118 [Thioalkalivibrio sp. K90mix]
          Length = 406

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 115/346 (33%), Gaps = 24/346 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++++++   + F      P+  A ++    +P+          S           V+
Sbjct: 34  LVALLVWLLGQVVSFFYALLLPLSVAGVLSLILYPVVRWLQRIAGFSRMGAVSSLFGVVL 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +V  + +      +++E +       ++                A E ++++  +  
Sbjct: 94  IALVVVSVLVVPTASHQVQEFIKGAPELAEN----------------AYESFSRNFPNAT 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    L    I           M ++   + + F+ + LFF    G  + +    +
Sbjct: 138 ERVASMLEELDLQSIMPNLEGVGSQLMHYVTVVVGLAFVPLYLFFALLSGERLKEGGREV 197

Query: 192 GEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                P   +++  +       + + F G  +IA+  G++L   + L G+ + +  G++ 
Sbjct: 198 LSVFRPQTQRELMFLGRLFVGYVTAFFQGQVVIALIMGVLLAVGFSLIGLQAAILFGLML 257

Query: 249 AIMAMIPGGAPISFT----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             + ++P    I        V+      G +     + +  A+   I    L P ++   
Sbjct: 258 GFLNIVPYLGTIVGLTLALPVAYLQPEGGGLTLVALVLVVFAVVQLIESWLLTPKIMADR 317

Query: 305 IKLPFLPTFFGLVGGV-RTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             L        +        G++G+ +   L A +A +WK   +  
Sbjct: 318 SGLHPAIVVISIFFWGTALGGIIGMILAVPLSAFVASLWKHFRVKW 363


>gi|325103185|ref|YP_004272839.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
 gi|324972033|gb|ADY51017.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
          Length = 353

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 125/344 (36%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+E  +     +  + + ++++  Y       P+L A  I     P++    SKK     
Sbjct: 1   MKELPITVIRSLELLGIVLVILIFYVGASIIMPILLAFFISIMLLPVHRFLRSKKIPE-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +++ V  + L  + L  + ++   ++ +L+++      +       LS         
Sbjct: 59  ---ILSIVISILLLAIFLGVIIWFFSAQVTKLINEFDQIKTNVNNHLNNLSHWIDNK--- 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                        +         N ++ + +        F  + +    + I ++     
Sbjct: 113 ------FGFSSKEQTKFINEQSNNILNSLGQILGGAMGSFSGFIVFFGLLPIYIYLMLFY 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                + +            K   +    +I++  LG+ I      ++LG    + G+  
Sbjct: 167 KNLFLKFIFMWFSESDHEMVKDSLKESETIIKNYLLGLVIQISYMTVLLGGLMTIFGIKH 226

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRP 298
            + + +I AI+ +IP    +    + + L       +     + +  ++  F+ +  L P
Sbjct: 227 GLLIAIIFAILNLIPYIGALFGNIIGVLLTLSATEELSAVITVLIIISVVQFLDNNILMP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +VG  +K+      FG++ G    G+ G+F+   L+A++ +I+
Sbjct: 287 RIVGSKVKINAFAAIFGVIVGGTVAGIAGMFLALPLIAVLKIIF 330


>gi|29830936|ref|NP_825570.1| integral membrane protein [Streptomyces avermitilis MA-4680]
 gi|29608049|dbj|BAC72105.1| putative integral membrane protein [Streptomyces avermitilis
           MA-4680]
          Length = 347

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 55/357 (15%), Positives = 114/357 (31%), Gaps = 27/357 (7%)

Query: 9   QGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  W  + +++  + +        L+    PVL AL+      P++   + +   + +
Sbjct: 9   RRLAAWCAVILLVAGVGWVGVQLCGELRTAVVPVLLALLGTALLGPLHRRLV-RVGVNRS 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A I  V+V+ +    +  +    +    E+V+ +  A Q                   
Sbjct: 68  LAAGITCVAVVAVVGGAVYIVVAALLDTGDEIVASLKRAAQSVAA--------------- 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                           +   L T               +  +     +  ++ +FFF RD
Sbjct: 113 --HFGAAGTSLDDLASNAKELLTKFGGTAASNVISGVSVVGESIAMAVLALLLVFFFLRD 170

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  L SL         + ++R   + +     G T+IA  + + +     + GVP 
Sbjct: 171 SHRAAGLLRSLAPGGTADTVEAMARRAFEAVEGFMRGTTLIAFIDAVCITVGLLILGVPG 230

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V LG +  + A IP     IS     +  L       A       A    +    L+P 
Sbjct: 231 AVGLGALVFVGAYIPYLGAFISGALAVLVALADRGFVIALWALGVVAAVQVLEGHVLQPA 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +    +++        + GG    G+LG+ +   L A    +  E       +  + 
Sbjct: 291 IQSRTVQMHPAVVMLTITGGASVAGILGMLLAVPLTAAAFAVVHELRARYAADTPQP 347


>gi|300775369|ref|ZP_07085231.1| permease [Chryseobacterium gleum ATCC 35910]
 gi|300506109|gb|EFK37245.1| permease [Chryseobacterium gleum ATCC 35910]
          Length = 370

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 103/323 (31%), Gaps = 14/323 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + +  +   L   +   AP   A ++     P  +    K     +   + +  
Sbjct: 11  KLTLVVVSIIGLGYLLALGQSILAPFFLAFLMAMLFLPAATFMERKLRFPRSMSTMTSVF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +    + F       ++ +    +    +    V   L       +  ++  +   
Sbjct: 71  IMLMILCGIIYFF----TNQLSDFSKDLPHLQEQFTTVFNSLQHWVSKTFNVKVDEQVDY 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q L            +            IF      IIF  +   F       ++  +
Sbjct: 127 INQGL---------NKLLSSSGVILGFTFGIFSTGFGFIIFFTLFFIFILNYRRLLNNFI 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            ++      A  ++    +  + +    G+ +  I   ++  +   + GV   + LGV+T
Sbjct: 178 VTVFNERHKASVQEAVNEIRIMTKKYIFGLFLQVIIVSVLTSTLLTVLGVKYAILLGVLT 237

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++ +IP     IS                   + L       +    + PF+VG  +K+
Sbjct: 238 GLLNVIPYLGIFISLLISCFIAFATSTPSTCIYVALGYIAIHAVDGNIVLPFVVGSKVKI 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
             L +F G++ G    G+ G+F+
Sbjct: 298 NALFSFIGILLGEHLWGIAGMFL 320


>gi|168211406|ref|ZP_02637031.1| putative domain of unknown function [Clostridium perfringens B str.
           ATCC 3626]
 gi|170710661|gb|EDT22843.1| putative domain of unknown function [Clostridium perfringens B str.
           ATCC 3626]
          Length = 345

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         +   +  +  G++              +     T      +
Sbjct: 94  KEGESFDGLINGIEFFINDLIMKMKFMELGIF-------------DVIEAQVTEKLNILL 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                      + F +  L+   + +  ++F   G  +S +          A  K + R 
Sbjct: 141 VSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPIEKRALLKNLGRD 200

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +     +
Sbjct: 201 VDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGAIPA 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + +         + L   I   I    + P +    I +  +     L+ G +  GLL
Sbjct: 261 IVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIGGLL 320

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+     +  +I V++ + 
Sbjct: 321 GMVFIVPIAVVIKVLFDDW 339


>gi|255994755|ref|ZP_05427890.1| membrane protein [Eubacterium saphenum ATCC 49989]
 gi|255993468|gb|EEU03557.1| membrane protein [Eubacterium saphenum ATCC 49989]
          Length = 390

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 112/335 (33%), Gaps = 8/335 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKK------EESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             P+   +++ F  +PI     +        ++   +L ++ ++      I  +++    
Sbjct: 56  LYPLWIGILLAFILYPIVKKIENLLSPYFKSKKIPKYLGILTSLLAFIAIISLIIYGLTS 115

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +L      +      +      ++   +     +SE      S   S+   +  +L + 
Sbjct: 116 LILGQLTFSNLSSNLGKVTEIFTKYKLALEEWGKSSEYANVISSQIVSVSTSALNWLTSI 175

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW-KKI 203
               +     + G+   +  + +I  I  L         I +    +  +         +
Sbjct: 176 FSASLFEGLKKVGISLFNVIIGMIMCIYILIDHTYFTRKIKRVARLIVRNKQRRSTLSNL 235

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              +  ++     G+ + A+   ++      + G+   V LG+   +M +IP   P +  
Sbjct: 236 MNDIVNILALFVRGVLLDALIIAVLSSILLTVLGIKFSVFLGIFAGVMNIIPYFGPFAGM 295

Query: 264 AVSIYLL-IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                L  I  +  +     +   +        + P +VG  + L  L     +  G   
Sbjct: 296 VPVFILTSITSSPLHGAIAVIAMIVLQQFDANLIYPKIVGEKLGLHPLIVILSVTVGWYY 355

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            GLL + I   +  +I  I +  I+ ++  K++ S
Sbjct: 356 GGLLAMIIAAPVATIIIKILRAFIVKLENTKKQPS 390


>gi|218440841|ref|YP_002379170.1| hypothetical protein PCC7424_3926 [Cyanothece sp. PCC 7424]
 gi|218173569|gb|ACK72302.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 340

 Score =  105 bits (263), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 107/337 (31%), Gaps = 13/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + I L  ++ ++     + +A+++      +   F    +       + +   ++
Sbjct: 7   IGIIALLISLYVVWQIRQLVLLIFTAIVLATALNQLVKQFQRW-KLRRFLAIITSFAILL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+  L +    + + +ELV  +         +   + +          +       Q
Sbjct: 66  IISIIFALLIIPPFIEQFQELVELLPTTLTQVEALINLIENRYLDFLELPDFNTLQQEIQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                            I R         ++  +  + + I    F  +  +       L
Sbjct: 126 PQIAR------------IVRGFFDVFSTSINIIVQAVLVFILTLMFLGNPQAYCSLFIRL 173

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I  +  + + S  +G+ I  +   ++ G   W+  VP  +A  ++  ++
Sbjct: 174 FPSFYRRRVGEILSLCEEALSSWTIGIIIEMVFITILSGIGLWILQVPLVLAHAILAGLL 233

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P       + + +    + A  + +   I   I    L P ++   + L    
Sbjct: 234 NFIPNLGPTLSVVFPVAIALLDAPWKAGAVLVLYIIIQQIESYWLTPTIMAKQVSLLPAV 293

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +      G LGL I   +  +     +E ++ 
Sbjct: 294 TLMAQLFFASFFGFLGLLIALPMTVIAKTWLEEILIK 330


>gi|310659688|ref|YP_003937409.1| permease [Clostridium sticklandii DSM 519]
 gi|308826466|emb|CBH22504.1| Permease [Clostridium sticklandii]
          Length = 368

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 42/332 (12%), Positives = 105/332 (31%), Gaps = 2/332 (0%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISK-KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           L  L    +P   A    +   P+  +        +     +I  +  + +  + +  + 
Sbjct: 34  LAILWAILSPFFWAFATAYILNPLMVALEKLDNRITRPISLIIVYILFVGILTLAITIVT 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  + E++ K+                    +    + T   ++  S+   +  FL 
Sbjct: 94  PVIVKNITEIIEKLPNYIDDTEKWISRQVLDYDLLEQLGINTYIFNNLDSIFNGAVDFLN 153

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +               L ++  +  L    +    I + L +            
Sbjct: 154 LTLTGVVASII-GITSGVAKMLLGLVISVYLLADKEKFIRGIKKNLYAFMGREHADKTID 212

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               V ++  + F+G  I ++  G++      L  V   + L ++  I  MIP   P   
Sbjct: 213 FGNEVNRIFTNFFVGKLIDSMIIGILCFIGLSLLKVRFALLLSIVVGIFNMIPYFGPFIG 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I + +  +   A  + L+           L P ++G  + +        ++ G   
Sbjct: 273 AVPAIVITLFYSPIQALWVTLFIFALQQFDGIILGPKILGDKVGVSPFYIILAIMIGGGF 332

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G +G+ +G  ++    V W + ++ + + K 
Sbjct: 333 FGPMGMLMGVPVLKSFFVFWDKILVTLLKKKN 364


>gi|237728791|ref|ZP_04559272.1| PerM family permease [Citrobacter sp. 30_2]
 gi|226909413|gb|EEH95331.1| PerM family permease [Citrobacter sp. 30_2]
          Length = 348

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +          IA   
Sbjct: 13  ILLKLAALVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVGRP-----IAITL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E +  +   N+       +L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLASSITEFMDLLPKYNKELTRKVLYLQEMVPFLNLHMSPERILQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T      +           M  +     +  +   + F   +       L 
Sbjct: 128 MDSDKLMTFTTTLMTSLSGAMASVFLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L G+   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMGIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+   I+    +     +   ++   L P ++G  + L 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGIYECLLVGALFLVVHMVIGNILEPRMMGHRLGLS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLIVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|170781212|ref|YP_001709544.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155780|emb|CAQ00901.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 352

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 118/340 (34%), Gaps = 10/340 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I  +L  L      V +A+ +     P+ +    K         ++  ++++     
Sbjct: 20  ALVIGGALVSLGTVLTYVGTAIFLALGIDPLVTFLERK-GVPRPVAILVIFLALLGSLAG 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +    + +   LV+++V   Q          D       S +  +          L
Sbjct: 79  VLLAVIPVVVNQASALVTQIVQYAQSVS------GDQFIENLQSFVPREVFDVQTGADQL 132

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +     + +  I            ++   ++ ++I   +F     S    L  L     
Sbjct: 133 VQYLSNASNVATITGNVLTVAFTIGNFLFGLVIVVILTMYFTASLNSFKSGLYKLVPATR 192

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A +  I+  + + +    +G   +A+  G++      + G         I  + +++P 
Sbjct: 193 RARFADIAEQITQSVGRYVMGQVGLALCNGVLSFVYLSIVGAALPAVWAFIAFLFSLLPL 252

Query: 257 GAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I+      +   +L+  ++     + ++  + + I    L P ++   +K+P +   
Sbjct: 253 VGTITGSALIVLGQIVLLPESMNTWIAVAVYYLVYMQIEAYVLSPNIMNRAVKVPGVVVV 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              + G   +G+LG  I   + A + +I ++  + ++  +
Sbjct: 313 IAALTGGTLLGVLGALIAVPVAAAVLLIIRQVAVPLQNER 352


>gi|312959557|ref|ZP_07774074.1| permease [Pseudomonas fluorescens WH6]
 gi|311286274|gb|EFQ64838.1| permease [Pseudomonas fluorescens WH6]
          Length = 356

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/349 (12%), Positives = 115/349 (32%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ +    + ++   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVTTLE-RLRLPGGA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M L +V ++ +      ++  L +++         +   L +    + + E
Sbjct: 69  AVGLVFALFMGLLVVFIVVVLPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLQAIEVARGEI--------GKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +         A   +++  + + I +   G  I  I  G V   A+    +   
Sbjct: 181 AMIGRWVSGYLPRE-RALITRVAEEMNRQIANYIRGKVIEIIICGGVTYIAFIALDLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T       L   G       L     I   +    L P 
Sbjct: 240 ALLALLVGISVVVPYVGAVVVTVPVTLIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPRR 348


>gi|224585374|ref|YP_002639173.1| hypothetical protein SPC_3651 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469902|gb|ACN47732.1| hypothetical protein SPC_3651 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|323131941|gb|ADX19371.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 385

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 49  ILLKLASLVIILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 103

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 104 VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 163

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 164 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 223

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L G+   +  GV+  
Sbjct: 224 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMGIQFALMWGVLAF 267

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 268 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMS 327

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 328 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 359


>gi|298490897|ref|YP_003721074.1| hypothetical protein Aazo_1849 ['Nostoc azollae' 0708]
 gi|298232815|gb|ADI63951.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 365

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 57/351 (16%), Positives = 121/351 (34%), Gaps = 19/351 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFF-------APVLSALIIGFTSWPIYSSFIS 53
           MR +      ++  + + II ++++ L   F         +  A I+ F           
Sbjct: 1   MRRSASPQSLLIYGLSVPIIALNVWLLSVLFRYFQHPITILSIAAILAFLLNYPVKFLE- 59

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           K   + T   +I  +  + L  +  + L    + +  +L++K+             L   
Sbjct: 60  KARITRTQAVIIVLIITLALLGILCVTLVPMVIEQTIQLLNKIPDWLASSQDNLGKLQ-- 117

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                      + ++   SL          N +  I   A  F    L   L+++ +++ 
Sbjct: 118 ------VVARQRRINIDFSLVTNQINANIQNLVQQIASSAVGFAGTLLSGLLNLVLVVVL 171

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            F+    G  +   L +L        + K  ++     ++ FL   ++ +   LVL   +
Sbjct: 172 AFYMLLYGDHVWYGLINLLPSNIGIPFNKSLQL---NFQNFFLSQLLLGLFMELVLTPIF 228

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
               VP  +   ++  +  +IP        ++   L++  N + A  +     +   I D
Sbjct: 229 LFLRVPFALLFAIVIGLSELIPFVGATLGISLVTILVLLQNWWLAFPVATVAIVLQQIKD 288

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L P L+G  I L  +  F  ++ G    GLLG  +   +   I   +  
Sbjct: 289 NLLAPKLLGNFIGLNPIWIFVSILMGFEIAGLLGTLVAVPIAGTIKGTFDA 339


>gi|33593185|ref|NP_880829.1| hypothetical protein BP2180 [Bordetella pertussis Tohama I]
 gi|33563560|emb|CAE42458.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
          Length = 361

 Score =  105 bits (263), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 121/339 (35%), Gaps = 4/339 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +I  + +      + F   +L ++I+  T  P++              AV+ T++
Sbjct: 22  AIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            M + +VP   L       +  +              P ++ ++P               
Sbjct: 82  TMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMT 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +            ++    +  G+    +  SI    + L +      +      
Sbjct: 142 NLQDVLKPLQPHLATAGRWLLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGV 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +     P     ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  
Sbjct: 202 RIAG---PEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVAL 258

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ ++     +    + +Y+ +      A    +W  +   + D  L+P ++   + +P 
Sbjct: 259 LICIVQLPLFLLMVPMVVYVFLNNTPTVAIVFAVWCLLV-SLCDNVLKPLMLARGVDIPI 317

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                G +GGV   G++GLF+G V   L  V++ + +  
Sbjct: 318 PVILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQ 356


>gi|114706310|ref|ZP_01439212.1| hypothetical protein FP2506_00960 [Fulvimarina pelagi HTCC2506]
 gi|114538171|gb|EAU41293.1| hypothetical protein FP2506_00960 [Fulvimarina pelagi HTCC2506]
          Length = 350

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/341 (10%), Positives = 96/341 (28%), Gaps = 25/341 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L    ++  + + +I+ ++        P++ +  I  ++WPI            ++ 
Sbjct: 4   KPDLMRNRLLAVIAIILIVAAVKIGYPVLMPIVVSFCIIASAWPIKRWANHLGPPKLSYA 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  +    L    ++      + +                        +       E 
Sbjct: 64  ITVVVLIFGLLIFFGIVLYALSQVAQ-----------------------KLVERREEFEA 100

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +  S       L     +    + +   +             I  + + +   + +  
Sbjct: 101 VFESYSDWAKTNGLPVLPDEVGAFERVLAMSRMVLSDLYTVLSYIGVVSVIVILGFPEVP 160

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++ +     E        +    +   +RS     T+ ++  G+      +  G+   V
Sbjct: 161 KLAYKFRQEYESKDNRAISETVTEMADSLRSYLAMTTLASLITGVASFIWAFALGLDLAV 220

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             G++  ++  IP    I              G       +F        I+   + P L
Sbjct: 221 IWGILNFLLNFIPVIGNIIGILPPTLYAFVQYGGWVMPLVVFSGFVALQLIISNFVYPML 280

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + LP +     L+      G+ G  +   L A++ ++
Sbjct: 281 QSKGVSLPPITIILSLLFWGWIWGIAGGLLAVPLTAMLVIV 321


>gi|293375781|ref|ZP_06622051.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|292645558|gb|EFF63598.1| putative membrane protein [Turicibacter sanguinis PC909]
          Length = 386

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 112/338 (33%), Gaps = 17/338 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK--------------EESSTFLAVIATVSVMC 72
                +P+L A +I +  +                          + T   ++  + V  
Sbjct: 49  FLSVISPILYAFVISYILYRPLMFIERNFKKGFKKISKKGISNGMARTISILLLAILVFF 108

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                +  +F   +  +  ++  +            W++++   + A  +  + +     
Sbjct: 109 AIYTLINSIFPPLIENIDTVMQSLPNFQTIIT---EWINNLTPYIKAVSITNEQIQEFTL 165

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   L TN ++      +    + ++   +II     L         I +    + 
Sbjct: 166 FLTNLLKGLLTNALNIGTGVVTNLTGLVINTLATIILTFYFLKDKETIFAGIDKLGTVIF 225

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +    A  K     + +V  +  +G  I A   G+       + G P  + +G+I  +  
Sbjct: 226 KPQIKAKIKHFLHDLHEVFGNFIVGQLIDAAIVGVASSLLLLIIGHPFALLIGLIAGVTN 285

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   PI   A+++ L +  ++      F+       I    ++P ++G  + L  +  
Sbjct: 286 IIPYVGPIIGAALALILGLFTSVKLGILGFILLIAYQQIDGYFIQPKILGDSVGLAPVWI 345

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F  ++ G   +G LG+ +   + AL  V        ++
Sbjct: 346 FIAILIGGNYLGALGMILSVPIAALCKVYIDRRFQKLE 383


>gi|150025670|ref|YP_001296496.1| putative transporting permease [Flavobacterium psychrophilum
           JIP02/86]
 gi|149772211|emb|CAL43687.1| Putative transporting permease [Flavobacterium psychrophilum
           JIP02/86]
          Length = 362

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 116/351 (33%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + + ++L  LY ++     ++ +LI+   + P       K + S+T   V    
Sbjct: 12  KALLIIVAIAMLLFFLYQIQSVIIYLIVSLILTLITSPFVGFLKRKLKFSNTIAVVFTMF 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M  F+  ++      + + + L           +      +         +++  +  
Sbjct: 72  LLMLTFVGLIMMFVPLILAQSENL---------SLLDTKSIENSATQLTNQFKIYLTNHH 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +   +       +FIP   +        + + +  ++   FFF +D    +  +
Sbjct: 123 INAGNLLNFSSLTSKINFNFIPTILNSILGTISSFGMGLASVLFITFFFLKDKIIFTNGM 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +               + +++   F+G+ I      ++      + GV +   +  + 
Sbjct: 183 KIILPDNHEEKILNSFTKINEMLSRYFIGLLIQLSIVFILYLIVLLIFGVENAFVIAFLC 242

Query: 249 AIMAMIPGGAPISFTAVSIYL---------LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           A++ ++P   P+  + ++  L              +     +     +   I +   +P 
Sbjct: 243 ALLNIVPYVGPLIGSVLAAILTMISNLGGDFQNDILPTTLYVMFGFWVVQLIDNNISQPL 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +    L  F   +      G+ G+ I      ++ VI KE +   K
Sbjct: 303 IFSKSVNSHPLEIFLVTLISGFLFGITGMIIAIPFYTMLKVIAKEFLPENK 353


>gi|268610403|ref|ZP_06144130.1| predicted permease [Ruminococcus flavefaciens FD-1]
          Length = 403

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/371 (12%), Positives = 108/371 (29%), Gaps = 20/371 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILV---------SLYFLKGFFAPVLSALIIGFTSWPIYSSF 51
           M  +       +  + + + ++          +        P+L  L   +    I + F
Sbjct: 1   MDRSEKKKYIFIAVLAVIVCIIVRNLSLLGKVIGIAVSAIRPMLIGLAAAYIFNIIMTGF 60

Query: 52  ISKKEE----------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
             +                    ++ +  + + I+ +  +        + L  ++    Q
Sbjct: 61  EKRYFPNKDTKFVNVSRRPVCLALSFLITIAILILIMYIVIPEIANAFRVLYHEIPPNFQ 120

Query: 102 HGIPV-PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                    L + P             +          T      +              
Sbjct: 121 KLQKFALEKLKEYPEIQQQISGLQFDWASIIGKATSILTSGVAGILTSAWGAIGTLTSTV 180

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            D  L I+F I  L    +      +                +  I  +  RS F+G  I
Sbjct: 181 ADIGLGIVFAIYVLIRKDKLFKDTKRICTVSFGKDKYRKISHVYHIANETFRSFFVGQFI 240

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            A+  G++      +  +P     G +  + A IP         +S ++++  +   A  
Sbjct: 241 DALLLGMLCFIGMTILRLPYAAMAGTLVGVTAFIPIVGAFIGAGISAFIILTVDPMQAVI 300

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             ++      I    + P +VG  + +P +  F  +  G    G+LG+ +G  L A+   
Sbjct: 301 FIIFLLCIQQIEGNLIYPKVVGDSVGVPGIWVFAAVTIGGGIFGILGMILGVPLSAIAYK 360

Query: 341 IWKESIMAIKE 351
           +  E++   + 
Sbjct: 361 LSFEALERKER 371


>gi|168207851|ref|ZP_02633856.1| putative domain of unknown function [Clostridium perfringens E str.
           JGS1987]
 gi|170660835|gb|EDT13518.1| putative domain of unknown function [Clostridium perfringens E str.
           JGS1987]
          Length = 345

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMAIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         +   +  +  G++              +     T      +
Sbjct: 94  KEGESFDGLINGIEFFINDLIMKMKFMELGIF-------------DVIEAQVTEKLNILL 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                      + F +  L+   + +  ++F   G  +S +          A  K + R 
Sbjct: 141 VSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNLGRD 200

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +     +
Sbjct: 201 VDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGAIPA 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + +         + L   I   I    + P +    I +  +     L+ G +  GLL
Sbjct: 261 IVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIGGLL 320

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+     +  +I V++ + 
Sbjct: 321 GMVFIVPIAVVIKVLFDDW 339


>gi|83589888|ref|YP_429897.1| hypothetical protein Moth_1040 [Moorella thermoacetica ATCC 39073]
 gi|83572802|gb|ABC19354.1| Protein of unknown function UPF0118 [Moorella thermoacetica ATCC
           39073]
          Length = 366

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 112/321 (34%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  L     P   A ++     P  +    K +    +  +   + V+ +  V L +L 
Sbjct: 39  IIKTLVPIVLPFALAALLAAIIDPAVNLLEKKLKIGRGWAVITTLLLVLAIMGVALFYLL 98

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++E++ LV  +    +    + +       G +       ++         +   + 
Sbjct: 99  ANLIIELESLVLNLPAQARSLGALLQEYFYRLQGFYFGGNLPPNILISFQSLFNNAVNVL 158

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +    +          D+ + +I  ++A +FF RD   I + L  +    +     +
Sbjct: 159 KGFLTQTVQGLVIIVSSLPDFFIFVIITLVATYFFSRDKELILRTLLRVMPAGWRERTSR 218

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   + + I        ++   +         +  V   + L  +  +  ++P   P + 
Sbjct: 219 VFSSLGQAIIGYLRAEILLISLQMTQSVLGLLILKVDYALTLAFLIGLADLLPIVGPGTV 278

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I +      +      L     + I+ + L+P LV   + L  L T   L  G++ 
Sbjct: 279 FIPWIIIEFILGHYGLGLALLILYAFIIILRQVLQPKLVAVNLGLYPLTTLIVLYAGLKL 338

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
           +G++GL +GP+ + ++   ++
Sbjct: 339 LGVVGLALGPLTIVVLKAFFR 359


>gi|78779257|ref|YP_397369.1| hypothetical protein PMT9312_0873 [Prochlorococcus marinus str. MIT
           9312]
 gi|78712756|gb|ABB49933.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9312]
          Length = 347

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 107/340 (31%), Gaps = 3/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            +  ++ I  + ++ L+ F   ++ +L+I      + +      +             + 
Sbjct: 7   FKLAVIIITSIIIWLLRDFLLLIICSLVISNIVCNLCNQIQKGLKIPRPLSLFFVLTVIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + +    + E  E++  +         +     +    ++  E     +    
Sbjct: 67  VIVFTIFILVLPPFVKEFNEILVDIPNGLSKINILLNTNLNKLNSLFYGEESENVIEIFN 126

Query: 132 ---SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++  + +       I    +             L +IF+++       +     + +
Sbjct: 127 LINNVVAIPDAATIAKAIQESFKNLINLAGNLGSGLLKLIFVLVVSLMISIEPKQYKENI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +   ++ I       + +    M + ++  GL+      +  V   V+  +I 
Sbjct: 187 LLLIPKNYRNKFRNILDKCNIALANWTFSMVVSSLSVGLLSLIVLSILDVKYVVSNALIA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP   P+      I + +  N +    +     I   I    + P ++     L 
Sbjct: 247 MVLNIIPNIGPVISGIFPISIALLDNFWKPLAVLGAYVIIQNIESYIIMPSIMKKKANLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T     G     G LGL +   L  +I V+ KESI  
Sbjct: 307 PGLTLISQFGFTFIFGPLGLILSLPLAVVIQVLIKESIND 346


>gi|331087230|ref|ZP_08336300.1| hypothetical protein HMPREF0987_02603 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408916|gb|EGG88377.1| hypothetical protein HMPREF0987_02603 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 357

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/330 (11%), Positives = 104/330 (31%), Gaps = 4/330 (1%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            + + ++     P   A ++ +   P+  +  +  + +   +A    + ++ +    L F
Sbjct: 29  YIGIKYILPLVLPFFCAFLVAYLLRPLVRNIHAHTKLNQGAVAGGLLLIILGVVGTALWF 88

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + +    +                      G++  E   +  S   +        
Sbjct: 89  LGSTLVQQFCYFIEHYGFYAGKMELFLDQCCRSMSGVFGMEAG-ELESLFVTRMATIAEN 147

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++   +  +   +  +    ++     I + +++     D   + ++      +     +
Sbjct: 148 IERQFVPKLMANSWGYVRTIIEVAGVGIIIFVSIILLVNDFDKLKEKASHSIGYRH---F 204

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            KI + +  +         II      +    + L   P  + LGV+   +  +P     
Sbjct: 205 VKILKRIFHMGGMFLKAQLIIMSVIAALCTVTFLLLKNPYALLLGVLIGFLDALPVLGTA 264

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                   +      F    ++   ++   +  + L P L+G  + LP +     +  G+
Sbjct: 265 VVLYPLAIVQAFQGRFLFAAVYAGLSVICNLTREFLEPKLIGEHLGLPAIMVLVTVYVGI 324

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           R  G+ G+  GP        I +E +   +
Sbjct: 325 RLFGVSGVITGPFGYLAGKEIVRELLQKGE 354


>gi|225619332|ref|YP_002720558.1| PerM, putative permease [Brachyspira hyodysenteriae WA1]
 gi|225214151|gb|ACN82885.1| PerM, Predicted permease [Brachyspira hyodysenteriae WA1]
          Length = 435

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 115/358 (32%), Gaps = 15/358 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  ++    L  +       AP +  + I +   P+ +   +K         ++  +
Sbjct: 71  KTSIVLILALFTLWVIKEAGYLVAPFIWGIFIAYMFDPLITKMQNK--IPRLAAVLLIYI 128

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L I+ ++F+    + +++ ++  +             +           +      
Sbjct: 129 PLLILAIIFVVFILPRTIEQIEVILKTLPQYVDKIYNSISDMLISLSEKLNRTIGKSFDI 188

Query: 129 HPQSLKILSETFLKTN----------GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           + +        FL  N           IDF  +  +    IF       + +    F+  
Sbjct: 189 NLEIDSKAINDFLFGNSGVITLMYRKIIDFRFQNINSITTIFSIIFSYFVILPFVTFYLM 248

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +I  ++  +    + +    I +    +I S  +GMTI+AI   ++      +   
Sbjct: 249 LDFQNIKDRIIKIIPMRWQSSVSNIIKNSNYIINSYVVGMTILAISFFIISYILLSVTNT 308

Query: 239 PSHVALGVITAIMAMIPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
                L ++  I+  IP   P +          +        A  + +   I   +    
Sbjct: 309 KYAFILALLRGILNYIPFIGPFAAFISALFIGIITEPVWWHGALKMCIIYGIIQILDSGI 368

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + P ++G  +K+  +   F  + G    G LG+        +I +  K        +K
Sbjct: 369 MAPKILGKSVKIHPIAVMFSTIIGGVLFGFLGVLFAVPFCGIIIITIKNFFNKYYHSK 426


>gi|291562535|emb|CBL41351.1| Predicted permease [butyrate-producing bacterium SS3/4]
          Length = 392

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/339 (10%), Positives = 91/339 (26%), Gaps = 13/339 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIA 66
           I   +  +  +L     P L A        P      ++              + +  I 
Sbjct: 53  ITGAVYGAFRYLLPLVIPFLCAYGTALFLRPSVRFLSNRIAVPFRGEMHHLPVSLVGGIE 112

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + + CL    L       + +    + +                 +       +     
Sbjct: 113 LLVMSCLVFGLLYAGGSMAVSQTGLFIRRFPDWLSALDLRLTDTCRLLEQKMGLKA-DAL 171

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +              K + +  +   +     + +   +      +A+    ++   I +
Sbjct: 172 VELAGRAVEEVRQMFKNSTMPVLMDRSVSALRVAVAGIVLFFIYFVAVLLTLQEMDDIRE 231

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                    F   +  +   +  V+ +       I      V      + G P     G 
Sbjct: 232 ---KRSRSAFRREFLVVGERIASVVGAWLKTQAFILFLTSAVCIFGLAVIGNPYSFLFGC 288

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              I+  +P     +        L+    +    +     +  + + +     L+G  + 
Sbjct: 289 GIGILDALPVLGAGTVLIPWGVALLFQKAWKKAAVIFGIYVVCYFLRQISEARLMGKQVG 348

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  L +   +  G++  GL GL +GPV + LI  + +  
Sbjct: 349 LSPLGSLVSMYVGLKLFGLSGLILGPVGVLLIGDLVRMY 387


>gi|218248122|ref|YP_002373493.1| hypothetical protein PCC8801_3369 [Cyanothece sp. PCC 8801]
 gi|218168600|gb|ACK67337.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
          Length = 344

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 110/337 (32%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++++ I +  L+ ++       +A++I      + + F  K     ++  +++   ++
Sbjct: 7   LAFIVVAISVYILWQIRQLLLLFFTAVVIANGLNHLVNWFQRK-GIKRSYGVLLSMTFLL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     +      ++ EL+  V    +  I   R L+          L T       
Sbjct: 66  IAIVGFFWIVIPPFAEQLPELIQLVPQGIEELITTLRSLAVKLDPELLKNLPT------- 118

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   +      ++ I           L   LS++ ++        +     Q    L
Sbjct: 119 ---LEEISQEFQPLVNQIAGRGLSVFYTTLAIPLSLVLLLALSLMLLANPQPYRQGFIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               + +    I       +    + + +  I    +      +  +P  +A  ++T I+
Sbjct: 176 FPSFYRSRINDILVNCDCCLHGWLISILLKMIIFASLSFIGLLILQIPLALAQAMLTGIL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A IP    I      I + +    + +  + +   I   I    L P ++   + LP   
Sbjct: 236 AFIPNIGLILSVIPPIAIALLETPWKSIVIIIIYLIIQQIDIHFLSPLIMKEKVILPPAI 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +      G+LG  +   L  +  V  KE ++ 
Sbjct: 296 TLLAQLFFAMIFGVLGFLLAFPLAVVGKVWVKEVLIK 332


>gi|262203246|ref|YP_003274454.1| hypothetical protein Gbro_3357 [Gordonia bronchialis DSM 43247]
 gi|262086593|gb|ACY22561.1| protein of unknown function UPF0118 [Gordonia bronchialis DSM
           43247]
          Length = 358

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 94/321 (29%), Gaps = 21/321 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  +     P+  AL++     PI S    +K   +    ++    V  + I     L 
Sbjct: 6   GIKSVASLVGPLFLALMLTVAVAPIPSWL-RRKGWPTWASFLVTLALVYGILIGLFASLV 64

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +        L +     N                          L+     +      L 
Sbjct: 65  FSVARLATILPTYSAKFNDLVGDF-----------------KSFLTSHGVSEDKVHAILS 107

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +    +      L    ++I ++  L F   D      ++++L           
Sbjct: 108 NVDSSKVISVVTDLLSSTLSITSALILILALLLFMAADAVGYDDRMETL--RRTRPDIAA 165

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
                 +  RS     T+  +   ++   A  L  VP  V  G+++ I   IP    +  
Sbjct: 166 AFSSFSRGTRSYLWVSTVFGLIVAVLDTGALALMSVPLPVLWGLLSFITNYIPNIGFVIG 225

Query: 263 -TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               ++  L+ G       + +  ++   I+   ++P  VG  + L    TF  L     
Sbjct: 226 VIPPALLALLDGGPDKMLLVIIVYSVINVIIQSVIQPKFVGDAVGLSTTLTFVSLRFWSW 285

Query: 322 TMGLLGLFIGPVLMALIAVIW 342
            +G LG  +   L  +   + 
Sbjct: 286 VIGPLGAILAVPLTMMAKALL 306


>gi|168218240|ref|ZP_02643865.1| putative domain of unknown function [Clostridium perfringens NCTC
           8239]
 gi|182379751|gb|EDT77230.1| putative domain of unknown function [Clostridium perfringens NCTC
           8239]
          Length = 345

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 110/319 (34%), Gaps = 13/319 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +     VL + I  +   P+Y     + + +  FLA+   +SV+ L +  L  L     
Sbjct: 34  FRDIIFIVLVSGIFAYILKPLYRFLCERTKINKNFLAMSIVLSVIFLILFFLTVLIPSMF 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E +     +         +   +  +  G++              +     T      +
Sbjct: 94  KEGESFDGLINGIEFFINDLIMKMKFMELGIF-------------DVIEAQVTEKLNILL 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                      + F +  L+   + +  ++F   G  +S +          A  K + R 
Sbjct: 141 VSFATSIINNLISFSENILAFAVIPVLAYYFLAYGDLLSNKFLYCCPMEKRALLKNLGRD 200

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V KV+    LG  ++++  G++      + G+   + L  + A++ +IP    +     +
Sbjct: 201 VDKVLGKYILGQLLLSLLVGVMTFIGMLILGIKFPLLLAFLNALLNIIPYFGAVLGAIPA 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + +         + L   I   I    + P +    I +  +     L+ G +  GLL
Sbjct: 261 IVVALVEGPNKILWVILTFLIIQQIEGNLIAPKITAESIDMHPILIIILLLIGEQIGGLL 320

Query: 327 GLFIGPVLMALIAVIWKES 345
           G+     +  +I V++ + 
Sbjct: 321 GMVFIVPIAVVIKVLFDDW 339


>gi|298675240|ref|YP_003726990.1| hypothetical protein Metev_1335 [Methanohalobium evestigatum
           Z-7303]
 gi|298288228|gb|ADI74194.1| protein of unknown function UPF0118 [Methanohalobium evestigatum
           Z-7303]
          Length = 356

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 55/352 (15%), Positives = 135/352 (38%), Gaps = 5/352 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
              +  +++ + ++++Y  K F   V+ ++ + +  +P+YS      +      + I+ +
Sbjct: 8   NLFIISLLLLVSIIAIYLTKEFVPVVVFSIFLTYVLYPVYSYLEKVTKSER-IASSISVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +  + +  L    + E+ +L++      +  I + + L D            +  S
Sbjct: 67  SALFILGLCIYLLLSSAVREISKLITSPDQIREPIIALEKELLDFISSTDYLSFIAE--S 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +  +        +      ++  F + F      Y +S +  ++  ++F  D   I  Q+
Sbjct: 125 YISNGLSQPVVTVINWVSPYVKTFLTSFITNTPLYLISFVLTLLFTYYFLIDARRIRAQI 184

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +               +  +  + F    + +   G++    ++L G+P  V LG+  
Sbjct: 185 MDVIPEKNKHVVSLFINELNVIYYNLFNIFFVTSFLTGVIASVGFFLLGIPYPVILGMAV 244

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIK 306
            ++ ++P    P+ +    IY LI  +   A  + L+G   L I  D  +RP L      
Sbjct: 245 FLLTLLPLVGAPVIYIPFFIYYLIIQDYATAIIILLFGIFILSIFPDSFIRPRLAKNKAS 304

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +  + T       +  +G  G  +GP++   +   ++  I    +  E+  S
Sbjct: 305 IHPVITLLSFTAPIFVIGFTGFIVGPLVYGFLLAFYRTKIKIKYQTDEEPES 356


>gi|308067937|ref|YP_003869542.1| Predicted permease [Paenibacillus polymyxa E681]
 gi|305857216|gb|ADM69004.1| Predicted permease [Paenibacillus polymyxa E681]
          Length = 361

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 27/279 (9%), Positives = 87/279 (31%), Gaps = 9/279 (3%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           + +  + +   PI      + +   +   ++  + +  L  V    ++     ++  L  
Sbjct: 46  MLSFFLYYLLRPIVDVMERR-KIKRSISILLIYLVIGVLLFVFSWGVWPTLRDQVTNLFE 104

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                 +  +                      LS                    +  ++ 
Sbjct: 105 NAPKLIKSLVDQLSQWRHNQSLRQVLPPGKDPLSQLSDTL--------NEAFSTLSDYSV 156

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
           +       + + +    I L++  ++G     ++ +     +     ++   +   + S 
Sbjct: 157 KLVSFVSYFFIVLATFPILLYYMLKEGSKFGPKMLNFFPKKYHKDALEVMEDIDSALSSF 216

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
            +   +I +  G+++   + + G+P  + L VI+  +  IP    ++ +   + + +  +
Sbjct: 217 IVSRVLINVALGVMMFLGFLIIGLPYALLLAVISIFLNFIPYVGAVAASIPVVIIGLFES 276

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              A    +   +   I D  L P + G  + +  L   
Sbjct: 277 PSMALWSLVVVIVAQQIQDNWLSPIVFGKQLDIHPLTVV 315


>gi|33596416|ref|NP_884059.1| hypothetical protein BPP1789 [Bordetella parapertussis 12822]
 gi|33566185|emb|CAE37091.1| conserved hypothetical protein [Bordetella parapertussis]
          Length = 361

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 121/339 (35%), Gaps = 4/339 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +I  + +      + F   +L ++I+  T  P++              AV+ T++
Sbjct: 22  AIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTLA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            M + +VP   L       +  +              P ++ ++P               
Sbjct: 82  TMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMT 141

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +            ++    +  G+    +  SI    + L +      +      
Sbjct: 142 NLQDVLKPLQPHLATAGRWLLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGV 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +     P     ++++    IR+   G+  +A+ + ++ G  + LAGVP+     ++  
Sbjct: 202 RIAG---PEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGLGFLLAGVPAAGLWAIVAL 258

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ ++     +    + +Y+ +      A    +W  +   + D  L+P ++   + +P 
Sbjct: 259 LICIVQLPLFLLMVPMVVYVFLNNTPTVAAVFAVWCLLV-SLCDNVLKPLMLARGVDIPI 317

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                G +GGV   G++GLF+G V   L  V++ + +  
Sbjct: 318 PVILIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQ 356


>gi|319954603|ref|YP_004165870.1| hypothetical protein Celal_3098 [Cellulophaga algicola DSM 14237]
 gi|319423263|gb|ADV50372.1| protein of unknown function UPF0118 [Cellulophaga algicola DSM
           14237]
          Length = 366

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 124/352 (35%), Gaps = 16/352 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + + L  LY ++   A +  A +I     PI      + +  +T   ++  V
Sbjct: 12  RALGIIAAILLTLFFLYKIQSVIAYLCIAAVIALIGRPIVIFIRKRLKAPNTVAVILTMV 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKEL-VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            ++ L    +         + K L +  +    ++   +   ++             + +
Sbjct: 72  LMVGLLSGIIALFIPLLTEQGKNLSLLDINQLQENINDLYNQVTQYFSSSP------EKV 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +       L +   +   + FIP F + F  +     + +  ++   FFF +D   +   
Sbjct: 126 TKMLEESHLEKNIFEGLDVGFIPNFLNTFLDVLSTASIGLFSVLFISFFFLKDSNLLQNG 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L     +      K     +  ++   F+G+ I      ++      L G+ + + +  +
Sbjct: 186 LLMFMPNEKEGKMKNSILKINDLLSRYFVGLLIQLFILFVIYTITLLLVGIENAIVIAFL 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNI---------FNATCLFLWGAIELFIVDKTLRP 298
            A+  +IP   PI    + I L +  N+           A  + +   I   I +   +P
Sbjct: 246 CALFNIIPYIGPIIGGVLMIVLTMTTNLDADFSTIILPKAGYVVIGLLIGQLIDNFFSQP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F+    +K   L  F  ++      G++G+ +      ++ VI KE +   K
Sbjct: 306 FIFSNSVKSHPLEIFLIIIIAGLLFGIVGMIVAVPGYTVLKVILKEFLSENK 357


>gi|149371682|ref|ZP_01891098.1| hypothetical protein SCB49_09765 [unidentified eubacterium SCB49]
 gi|149355309|gb|EDM43869.1| hypothetical protein SCB49_09765 [unidentified eubacterium SCB49]
          Length = 346

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 62/351 (17%), Positives = 127/351 (36%), Gaps = 21/351 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              Q  +  +I+ +  +    +  + + VL A+ I     P  +  I +   +S+  A++
Sbjct: 11  TIRQVFILLIILLMGSLIFREMLPYLSGVLGAVTIYVLLRPWMNKLIKR-GWNSSIAAIM 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +      ++P+  +      ++ + V                  D  G    S++   
Sbjct: 70  LMLVSFLGILLPITGILLMLGNKIGDAVKNSERVTLAFKDQVGKWEDKLGMNLHSQIDVD 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                             +   ++      F     +  +SI  M   LF+ +    +  
Sbjct: 130 ------------------SISKWVTENLEGFAGGTFNIFISIGIMYFLLFYLFVGNRTFK 171

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q L      +     K I + +   +RS  LG+ ++AI +G++    + + GV       
Sbjct: 172 QSLFEYIP-INKDNLKTIGKEINSTVRSNALGIPLVAIAQGIIALIGFLIFGVEDPFFWF 230

Query: 246 VITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VI  + +MIP          V I  L  G+ F A  +  +G + +   D  +R +++   
Sbjct: 231 VIVTVGSMIPFIGTFVGILPVFILTLSSGSAFQAWGILAYGIVVVGSTDNIIRLYVLKRL 290

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             +  L T  G++ GV   G +GL  GP+L++L  V  +          E+
Sbjct: 291 DDVHPLITLIGVIVGVPLFGFIGLVFGPLLISLFIVTVRIYRKEFGRKVEE 341


>gi|17228745|ref|NP_485293.1| hypothetical protein alr1250 [Nostoc sp. PCC 7120]
 gi|17130597|dbj|BAB73207.1| alr1250 [Nostoc sp. PCC 7120]
          Length = 362

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 111/336 (33%), Gaps = 12/336 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           ++++ V   + +     +  A I+ F    +   F   +    T   VI  +  + LF +
Sbjct: 24  VWLLSVLFRYFQNPLTILSLAAILAFLLNYLVKFFERARIT-RTQAVVIVLLVTLTLFGI 82

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L    + +  +L++K+                            + L     +   
Sbjct: 83  LTVTLVPMLIDQTVQLLNKIPDWLTASQANLEHFERF--------AKQRRLPLDLRVLSN 134

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  + +  +   A       L   L+ I +++  F+    G  +   L +L     
Sbjct: 135 QINASIQSVVQQLASGAVGLAGTLLSGLLNFILVVVLAFYMLIYGDRVWYGLINLLPSKI 194

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                K  ++     ++ FL   ++ +   + L   + +  VP  +   ++  I  +IP 
Sbjct: 195 RFPLTKSLQL---NFQNFFLSQLLLGLFMIVALTPIFLILKVPFALLFAILIGISQLIPF 251

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                   +   L++  N + A  + +   I   I D  L P L+G  I L  +  F  +
Sbjct: 252 IGATLGIGLVTILVLLQNWWLAVQVAIAAIIMQQIKDNLLSPRLLGNFIGLNPIWIFVAI 311

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + G    GLLG  +   +   I   +        ++
Sbjct: 312 LMGYEIAGLLGTLVAVPIAGTIKGTFDALKGGKSDD 347


>gi|260062550|ref|YP_003195630.1| hypothetical protein RB2501_13204 [Robiginitalea biformata
           HTCC2501]
 gi|88784117|gb|EAR15287.1| hypothetical protein RB2501_13204 [Robiginitalea biformata
           HTCC2501]
          Length = 366

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 114/351 (32%), Gaps = 14/351 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + ++   LY ++   A VL A ++     P    F  + +  +T   V+  +
Sbjct: 12  RAVFILAAIVLVAYFLYLIRSVIAYVLIAAVVALMGRPAVLFFRQRLKFPNTLAVVVVVL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L    +         + + L                  S               + 
Sbjct: 72  LMIGLLAGIIALFIPVITEQGRNL-----SLLDMEELQKDLNSLYLEITEYFGASPASID 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L +  L+   I FIP   +    +  +  + +  ++   FFF +D       L
Sbjct: 127 ALIEKTDLEKNVLEGLDIGFIPDMLNSIVGLLSNLSVGLFSVLFIAFFFLKDSRLFQNSL 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L          +    +  ++   F+G+        ++      L G+   V +  + 
Sbjct: 187 IALVPDDKEGRVLQSLEKIKGLLSRYFVGLLGQIFVLFVIYTVVLLLVGIEDAVVIAFLC 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNAT---------CLFLWGAIELFIVDKTLRPF 299
           A+  +IP   PI    + I L +  N+ +            +FL   I   + +   +P 
Sbjct: 247 ALFNIIPYVGPIIGGVIMIILTMTSNLGSDFSSVILPDVGWVFLGLTIGQLVDNFFSQPV 306

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    ++   L  F  ++      G++G+ +       I VI KE +   K
Sbjct: 307 IFSNSVRSHPLEIFLVIIIAGLLFGVMGMIVAVPGYTAIKVILKEFLAENK 357


>gi|219668948|ref|YP_002459383.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
 gi|219539208|gb|ACL20947.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
          Length = 354

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/341 (14%), Positives = 116/341 (34%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  +   +I +  Y+    FAP + AL+      P     +   + +    A I+   
Sbjct: 11  TLLVIIAFILIPLVAYYALPHFAPFIFALVFALLLEPFNQWLMKWPKINRPVAANISYFV 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +  F++   FL      E  EL+  +     +        +     +            
Sbjct: 71  FLGGFLLLAYFLITKITSEAYELIKFIQRNIPNIQFWFNDANQRINELIMVLPPEMVAQI 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q++   +      N +                + ++++   IAL+    +   ISQ+  
Sbjct: 131 NQTITGFANQLSSINLLSTWGAQTISITASIPIFFITLLIFFIALYMINLNLHHISQRFF 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S  +         +   +            +++    +V      +  +   + L ++  
Sbjct: 191 SYFKKESKPKAIAVLSDLRNATIGFLKAQVVLSTFTYIVSLGGLLILDMRYALVLALLIV 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ ++P     S       +LI      +    +   I + ++ K + P ++G  I L  
Sbjct: 251 IVDILPILGTGSVLVPWGIVLITLGDIFSGLGLILLFIVITVLRKIIEPKILGERIGLGP 310

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           L T   +  G + MG+LG+F+ P+L+     + K  ++  +
Sbjct: 311 LSTLISIWVGFKVMGVLGVFLAPLLIIFYKALVKAKVIQYR 351


>gi|215425410|ref|ZP_03423329.1| putative transmembrane protein [Mycobacterium tuberculosis T92]
 gi|219556003|ref|ZP_03535079.1| putative transmembrane protein [Mycobacterium tuberculosis T17]
 gi|260185070|ref|ZP_05762544.1| putative transmembrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|260199207|ref|ZP_05766698.1| putative transmembrane protein [Mycobacterium tuberculosis T46]
 gi|260203350|ref|ZP_05770841.1| putative transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289441581|ref|ZP_06431325.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289445737|ref|ZP_06435481.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289568108|ref|ZP_06448335.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289572785|ref|ZP_06453012.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289748681|ref|ZP_06508059.1| conserved membrane protein [Mycobacterium tuberculosis T92]
 gi|289414500|gb|EFD11740.1| conserved membrane protein [Mycobacterium tuberculosis T46]
 gi|289418695|gb|EFD15896.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289537216|gb|EFD41794.1| transmembrane protein [Mycobacterium tuberculosis K85]
 gi|289541861|gb|EFD45510.1| conserved membrane protein [Mycobacterium tuberculosis T17]
 gi|289689268|gb|EFD56697.1| conserved membrane protein [Mycobacterium tuberculosis T92]
          Length = 367

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 98/331 (29%), Gaps = 14/331 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    M  +L  L   +    PVL AL++     P      S+          +  +
Sbjct: 23  RFLVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPRAVAVTLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    L F+    +  +  LV++V  +                  W  E       
Sbjct: 82  SGFAVLGGILTFVVSQFIAGLPHLVTEVERSIDSARR------------WLIEGPAHLRG 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N    +   A        +   + + ++  L FF   G SI Q +
Sbjct: 130 EQIDNAGNAAIEALRNNQAKLTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +   R     +        ++A+ +   +G+   + GVP  + L  + 
Sbjct: 190 TKAFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLV 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A IP    +       +  L+   I  A            +    L+P ++G  + +
Sbjct: 250 FFGAFIPLIGAVVAGFLAVVVALLAKGIGYALITVGLLIAVNQLEAHLLQPLVMGRAVSI 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     +  G    G++G  +    +A  
Sbjct: 310 HPLAVVLAIAAGGVLAGVVGALLAVPTVAFF 340


>gi|194017243|ref|ZP_03055855.1| sporulation integral membrane protein YtvI [Bacillus pumilus ATCC
           7061]
 gi|194011111|gb|EDW20681.1| sporulation integral membrane protein YtvI [Bacillus pumilus ATCC
           7061]
          Length = 372

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 103/343 (30%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +M   I    +V LY    F  P   ALI+     P              F+ VI  +
Sbjct: 11  RSLMMISIAVFAVVFLYQSFPFLYPFWIALIVSCLIHPAVCKIEEITGMPRGFVVVIVLL 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    +  L    +     L   +       I +              ++  +  +
Sbjct: 71  LFLVVAASFITLLVAEIISGSAYLAKVLPGHLDRMIGIVEQFFTDKILPLYHDVTAQFNT 130

Query: 129 HPQSLKILSETFLK----------TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                K      ++             +         F  +  D   +++F  +A FF  
Sbjct: 131 LQAGQKESILGQIQALGDEAAAKIGTFLSKTLELIPAFLGLLPDAAATLLFSALATFFIT 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D F++ +    +    +  + + I   + K I        ++      ++     +  V
Sbjct: 191 KDWFTLKKYGSRIFPAKWMQHTRAILSEIKKAITGFMKAQLLLVAMTIGLVIIGLIILKV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +    + ++P     +     I         +         I + I  +   P
Sbjct: 251 EHALVIALCIGFVDLLPYIGSGTVFLPWIIYSAMTGNLSLAIGLGILYIVVLIQRQISEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G++ +G LGL IGP  + +    
Sbjct: 311 KVLSKSIGLNPLATLVALFVGLKWLGFLGLVIGPASLVVWQAF 353


>gi|269118828|ref|YP_003307005.1| sporulation integral membrane protein YtvI [Sebaldella termitidis
           ATCC 33386]
 gi|268612706|gb|ACZ07074.1| sporulation integral membrane protein YtvI [Sebaldella termitidis
           ATCC 33386]
          Length = 383

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 112/342 (32%), Gaps = 6/342 (1%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +++F+++   + +  F +P + A++       I     SK +        IA + V  
Sbjct: 18  RILLVFLLIFIAFKIAVFLSPFVLAVLFSMIVTKIAKFLNSKVKLPKKISTAIALMIVFA 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-GMWASELWTKHLSHPQ 131
             +  +  +    +LE+  L   +    Q          +    G    +   + + +  
Sbjct: 78  TVVGLISLIVTKLILEIYSLSFNISTYAQEIRLWIDNFMNFMNRGTIILDRIPEQILNQL 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +     + T+ I  I      F     +  +     +IA  F   D  +I   ++  
Sbjct: 138 KGSVSDIISMATSKISVILNNILSFITSLPNVVIYFFVTVIATVFMSLDKQNIILFVEKQ 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA-----YWLAGVPSHVALGV 246
               +      +   +  V+        ++       L        +    V   +   +
Sbjct: 198 LPASWLNKIYTLKNDLLSVVGGYLKAQAMLITICFFELLIGLNLFHFMGLNVQYPLTFAI 257

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I   +  +P     +F    I + +    F      L   + +  V + L P L    I 
Sbjct: 258 IICAIDALPILGAGAFMIPWIVVSLIVKDFKMAVALLILYVIVTAVRQLLEPKLYSQNIG 317

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +  L T   +  G++  G +G+ +GP ++ ++  ++ E +  
Sbjct: 318 VHPLITLLSMYTGLKLAGFIGIIMGPAVVIILKNVFHEELER 359


>gi|258542555|ref|YP_003187988.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256633633|dbj|BAH99608.1| transporter [Acetobacter pasteurianus IFO 3283-01]
 gi|256636692|dbj|BAI02661.1| transporter [Acetobacter pasteurianus IFO 3283-03]
 gi|256639745|dbj|BAI05707.1| transporter [Acetobacter pasteurianus IFO 3283-07]
 gi|256642801|dbj|BAI08756.1| transporter [Acetobacter pasteurianus IFO 3283-22]
 gi|256645856|dbj|BAI11804.1| transporter [Acetobacter pasteurianus IFO 3283-26]
 gi|256648909|dbj|BAI14850.1| transporter [Acetobacter pasteurianus IFO 3283-32]
 gi|256651896|dbj|BAI17830.1| transporter [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654953|dbj|BAI20880.1| transporter [Acetobacter pasteurianus IFO 3283-12]
          Length = 360

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 141/348 (40%), Gaps = 7/348 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               ++      ++L +++ L+ F   ++ A  I  T WP+     +    S        
Sbjct: 18  TRPVLVALFACTLVLGAVWILEPFIPALIWAGTIAVTMWPLLLRLQAWLHGSRKMAISCT 77

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIPG-GMWASELWT 124
            +  + LF++P        +         +          +P  L  +P  G +  + W 
Sbjct: 78  LLVALALFVLPFWMAVSTVVKHADAFGRIIPYIKSLKLPDLPEKLLHLPLVGEYLGKWWQ 137

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      +          + ++  +A   GM+ + + L++I +      F      +
Sbjct: 138 HLQNMKPMDIVQQAVPQPDQIMHYLMSYAGSIGMLAVQFLLTLIILAA----FLAKAEYL 193

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
               + L   L     +++  +  + IR   LG+T+ AI E LV G   +L GVP    L
Sbjct: 194 ITTSEKLVGTLSGKRGQEMLELAVRTIRGVALGVTLTAIVESLVGGGGMYLTGVPWASIL 253

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +T +  ++  G  I+     I++     +  A  L     + +F+ D  LRP+L+   
Sbjct: 254 TAVTFMACLLQAGPGITLFPAVIWVYFDKGMVPAIVLLAITFLTIFL-DNMLRPYLIRKQ 312

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +P +    G++GG+  +GL G+F+GP+++++   + K+ + + +E+
Sbjct: 313 ADVPLVLIMMGVIGGLAALGLAGIFVGPMILSITYTLIKQWMESNQES 360


>gi|239628723|ref|ZP_04671754.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518869|gb|EEQ58735.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/331 (13%), Positives = 98/331 (29%), Gaps = 1/331 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I  I  +    L     P + AL I     P  S   S+ +      A    +  
Sbjct: 14  IYFAIIGVICYILFKRLIPMLMPFIMALAIAAVLDPAVSFLGSRMKGGQKCAAAAVLLLF 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                        +    ++E   K+       +  P           +    + H+S  
Sbjct: 74  YGCLFSLAAVSGNWLFSCIQEQGRKLPALYSEVVE-PGLSRFFTLLEASFPGHSIHISSL 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +    +           +  + +   + F    + I+  +IA FF           L  
Sbjct: 133 GTSLEHAMENAAGALSSSLIGYGASVLVGFPSLLVDILAAVIASFFLTGSYRQTVAFLMR 192

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                  A        +  V         ++       L   + + GVP       +  +
Sbjct: 193 QIPEKQRAILTVACASIRDVTGRLVKAYALLMALTFAELSVGFLILGVPMGFTAACLITL 252

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++P     +      ++       +     +   + + +V ++L P +VG  + LP  
Sbjct: 253 VDILPVLGTGTVLLPWAFIAWTTGSRSLGIGLVCLYLLITVVRQSLEPKVVGLQMGLPPA 312

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                +  G + +GL G+F+ P+   ++  +
Sbjct: 313 AALLCMFVGGKVLGLPGIFLFPIGATVLFKL 343


>gi|82703757|ref|YP_413323.1| hypothetical protein Nmul_A2644 [Nitrosospira multiformis ATCC
           25196]
 gi|82411822|gb|ABB75931.1| Protein of unknown function UPF0118 [Nitrosospira multiformis ATCC
           25196]
          Length = 393

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/319 (12%), Positives = 97/319 (30%), Gaps = 15/319 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +    ++ +LY  + F  P+L  +++ +T  P+   F   +   +        + V
Sbjct: 42  ALWILAFIAVIAALYLGRAFLVPLLFGILVSYTLSPVVDWFERYRIPRALGA-----ICV 96

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW------ASELWT 124
           + + +    ++      +   +  ++    +        L D            A EL  
Sbjct: 97  LGVLVGGTSWMALSLSADAAIMAEQLPETARKLRQSLNILRDGNWSTLRHFQEAADELGR 156

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +         +    ++    ++         + + +      +++  +F    G   
Sbjct: 157 VAVDAGLESADRAVIIKESENNAWLRDLMLTQSALLVTFTAQAPVVLLLTYFLLAAGSHF 216

Query: 185 SQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++L               +I   V   I+   L M I      ++   A+ + G+    
Sbjct: 217 RRKLVRFVGPRLSQKKDAVRILEEVDSQIQRYLLVMLISNALIAVMTWLAFEMLGLKHPA 276

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             GV   ++  IP    +           L  G++  A  L     +   +V   L  +L
Sbjct: 277 VWGVAAGVLHFIPYLGTVGVALACGVAGMLQFGSLSQAFLLVAVFLLISGVVGMMLTTWL 336

Query: 301 VGGPIKLPFLPTFFGLVGG 319
            G   ++     F  L+  
Sbjct: 337 QGRFARVNPAVLFIALLFF 355


>gi|332171189|gb|AEE20444.1| protein of unknown function UPF0118 [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 345

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 127/351 (36%), Gaps = 20/351 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  Q  + ++I+ +  +    +  + + VL A+ +           + K++ +    
Sbjct: 5   KPGLLRQAFVIFLIILLGWLIFKEMATYLSGVLGAITLFVLMRKWQGHLVKKRKWNPGVA 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +   +   + ++P+  L      ++ + V                L    G       
Sbjct: 65  AGLLMTASFLVILLPIAGLVLMLSSKISKAVENSGKVIDILKTELSSLEASFG------- 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                        L+ +   ++  +++            +  ++I  M   L++   +  
Sbjct: 118 -----------MDLASSIDTSSITEWVSNNLQGLVGSTFNIFIAIGIMYFMLYYMLTNRR 166

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +  + L      L     K I +    +++S  +G+ ++A+ +G V    + + GV    
Sbjct: 167 TFRESLLEYIP-LSDKNLKLIGKDSVDLVKSNAIGIPLVALLQGAVALIGFLILGVEDPF 225

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               I  + +MIP     +    V I L   G+++ +  L L+G I +   D   R  + 
Sbjct: 226 FWFAIVTVGSMIPFVGTALGVIPVCIILYAAGDVWQSIVLALYGIIVVGSTDNLFRLVIQ 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                +  L T  G++ GV   G +GL  GP+++++  +I K       + 
Sbjct: 286 KRLADVHPLVTIIGVIVGVPLFGFIGLIFGPIVVSIFLLIVKIYKHEYGKE 336


>gi|261341969|ref|ZP_05969827.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
 gi|288315879|gb|EFC54817.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
          Length = 349

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 105/332 (31%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + F+ +          +A   
Sbjct: 13  ILLKLACLVVILAGIHAAADILVQLLLALFFAIVLNPLVTWFLRRGVSRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  LF      + E  + +   N+        L  +   +       + L  
Sbjct: 68  VVIVMLIVLTALFGVLAASLSEFSTMLPQYNKELTRKLVDLQRMMPFINLHISPERMLRR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++       G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSEKVMTYATTLMTGLSGAMASILLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L  V   +  GV+  
Sbjct: 188 RAL----------------KGVSKYLALKTLLSLWTGVIVWLGLVLLDVQFALMWGVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     +S     I   +    +    +         ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVLSAVPPMIQAFLFNGFYECMLVGALFLAVHMVLGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|225378516|ref|ZP_03755737.1| hypothetical protein ROSEINA2194_04184 [Roseburia inulinivorans DSM
           16841]
 gi|225209619|gb|EEG91973.1| hypothetical protein ROSEINA2194_04184 [Roseburia inulinivorans DSM
           16841]
          Length = 280

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 81/239 (33%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            +  D    M   +             I        N ++               + +S 
Sbjct: 7   EFSHDNQDIMKLVDQLQFQPDQAIKWGISLLGNGVGNMMNTTMSAVGSIASGLATFFISF 66

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
            F    LF   +    + + + +            I  +  +   +   G  + A+  G+
Sbjct: 67  SFACYILFQKEKLHLQVRKVIFAFIPKQKADAILNICSLTYRTFANFLAGQCLEAVILGM 126

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +      +  +P  + +G++ A  A++P        AV  +L+   N   A    +   +
Sbjct: 127 MFVITLSILKMPYALLIGILIAFTALVPIFGAFIGCAVGSFLIFMVNPKQAVLFIIVFLL 186

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
              I    + P +VGG + LP +     +  G   MG++G+ I   L+++   I++E +
Sbjct: 187 LQQIEGNLIYPHVVGGSVGLPSIWVLAAVTIGGNLMGIIGMLIFIPLVSVFYTIFREFV 245


>gi|301168518|emb|CBW28108.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 348

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/346 (14%), Positives = 113/346 (32%), Gaps = 17/346 (4%)

Query: 1   MRETMLNP---QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M+  M  P   + +   + + + L SL+       P+  A ++     P+    + +   
Sbjct: 1   MQRAMSKPEKVRLVFFILGLILFLFSLWLFPRVSIPLSVAYVVSLIFNPVV-PMVMRFGL 59

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             +    I  ++++ LF  PL+ +      E + +   +           + L+      
Sbjct: 60  KKSTSVNIVFLAILFLFTYPLIKITPTITNEAQNVQYYLPKVESFLKTEYKNLTSKIEEK 119

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               +  + L +       + T +      ++                 I  + + +FF 
Sbjct: 120 TGYVVGNEILDNSLDYGQKATTEILLQVPKYLGS-----------IIEWIFLVPLFVFFI 168

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +DG         +  +     +  +S    + +        + A   G+++ +      
Sbjct: 169 LKDGKEFKSNFLKIVPNSMFERFYYLSHQFNRQLGDYIFAKFVEASIVGIIITTGLLFLD 228

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKT 295
           V   + LG++     +IP   PI  T  +I   L   G       + +   +   I    
Sbjct: 229 VRFALLLGLVAGFTNVIPYLGPIIGTIPAIIFGLAEYGWGPTFGAITILYIVANAIDIAL 288

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + P LV   + L  L     ++ G    G++G+ I   L A   +I
Sbjct: 289 VFPILVSKIVNLHPLMVVISVILGSTFFGVVGMIISIPLAAAFKLI 334


>gi|78486220|ref|YP_392145.1| hypothetical protein Tcr_1881 [Thiomicrospira crunogena XCL-2]
 gi|78364506|gb|ABB42471.1| Conserved hypothetical protein with DUF20 [Thiomicrospira crunogena
           XCL-2]
          Length = 367

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/364 (19%), Positives = 132/364 (36%), Gaps = 15/364 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR      +G +  +++  ++  L+    F   +L A+I+   ++ +Y   + K ++S  
Sbjct: 1   MRSNAPYEEGFLIILLLTAVVGLLWLFSPFLEALLFAMILATATYSLYLKVLPKVKQSPN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           + + + +V V    I P+ +L     L++  +VS+         P      +    +   
Sbjct: 61  YASAVMSVFVFVTVIAPVTYLLLEVGLQVGHIVSQAEQWLSQQTPESLSQLN-QNLVEVI 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                           +   L T   D I             +   I   + ALFFFYRD
Sbjct: 120 PFPESTQMELIRQVKDNSDKLITFAQDTIMFLVKGIFGNTTSFITFIFLAVFALFFFYRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  IS  L  L       Y   I      +     L +  +A+ +G V     W  G+P 
Sbjct: 180 GHRISHHLKILSPLEN-YYDTMIMTRFSNLSTILLLSVLGVALMQGAVFAIVAWFLGMPG 238

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPF 299
                 I     +   GA + +   ++ ++ +G+   A  +  +GA+   F +D  +RP 
Sbjct: 239 LFIGMAIAITSFIPIVGAALIWIPFALIMVAQGDYVAAGVVVFFGAVVNGFFIDNVVRPM 298

Query: 300 LVGG------------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L+               +    L T      G+   G++GLF GPV+ A+   I+     
Sbjct: 299 LIQKISLSLGGASEELAVANHTLITVLSTFAGLIHFGMIGLFFGPVIAAMAITIFDVYAH 358

Query: 348 AIKE 351
              +
Sbjct: 359 KNSD 362


>gi|111022838|ref|YP_705810.1| hypothetical protein RHA1_ro05875 [Rhodococcus jostii RHA1]
 gi|110822368|gb|ABG97652.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 403

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 14/289 (4%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
             WP   +   ++   +   A  + V  + +    +  +    + +  EL +K       
Sbjct: 70  VLWPPTRAMTRRRIPPAAAAAT-SLVVFIAVVAGIIAGIVPSVVNQAPELANKATQGINQ 128

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                          W                I +           I             
Sbjct: 129 VQD------------WLKGPPINLQDDQIDQGIHTIVVKVQESGTVIASGVFTGVSTASS 176

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             L++  +++  FFF +DG      L S+G      + + +   +   +        +++
Sbjct: 177 LLLTLGLVLVLSFFFIKDGPRFIPWLHSVGGGRAGRHLEVVLGRMWDTLGGFIRTQALVS 236

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCL 281
           + + + +G+   + GVP    L ++T I   +P        A+++ + +    +  A  +
Sbjct: 237 LIDAVFIGAGLLILGVPLAPVLAILTFIGGFVPIVGAFVAGALAVLVALVANGLTTAVIV 296

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +   +   I    L+P L    +KL  +     +  G    G++G F+
Sbjct: 297 LIIILVVQQIEGNVLQPVLQSKSMKLHAVVVLLAVTAGGSVFGIVGAFL 345


>gi|291457935|ref|ZP_06597325.1| membrane protein [Oribacterium sp. oral taxon 078 str. F0262]
 gi|291419479|gb|EFE93198.1| membrane protein [Oribacterium sp. oral taxon 078 str. F0262]
          Length = 408

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/352 (11%), Positives = 105/352 (29%), Gaps = 24/352 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------------------ESSTFLA 63
              +L     P+       +   P+   +  + +                         A
Sbjct: 45  IFGWLLIVLKPLALGFSFAYLLSPVVEFWEKRLKEILPERRSAGEKKGKGRGERRGCRPA 104

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +    ++ +  V LL       L     ++ +    +        ++     +      
Sbjct: 105 ALLLTFLLVILSVTLLLSLLVSALTSSVQLADMDNLWEMASGFAAAVNGFYQDILQKLSK 164

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                   S  +        + +    +           +  S +F +I   +F  DG +
Sbjct: 165 LPVGGSDFSQYLQDGVGTGLSFLQGFLQGILSTFGNVGSFLSSFVFALIFCIYFLLDGEN 224

Query: 184 ISQQLDSLGEHLFPAYWKKIS----RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           I++        LF     ++         +       G  I A+   +++ +   L GV 
Sbjct: 225 IARYWGRAFRLLFGERIFRLLGVFLSDADRAFSGYIRGQIIDAVIMMVLVSAVLALVGVK 284

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + +G++T I  +IP   P+     ++ + L+ G+            +   +    + P
Sbjct: 285 YALIIGILTGIGNLIPYTGPLVAYGSTLLICLLYGDYRRLLIALPLLFVIQTLDGNIINP 344

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            L+   + +  L     L+ G    G LG+ I   + +L+ + +   +   +
Sbjct: 345 KLLSDSVNVHPLLVIASLLIGGAAGGFLGMLIAVPVGSLLKIQFDRLLRYKE 396


>gi|39997549|ref|NP_953500.1| hypothetical protein GSU2454 [Geobacter sulfurreducens PCA]
 gi|39984440|gb|AAR35827.1| membrane protein, putative [Geobacter sulfurreducens PCA]
 gi|298506491|gb|ADI85214.1| membrane protein UPF0118 [Geobacter sulfurreducens KN400]
          Length = 346

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/326 (9%), Positives = 99/326 (30%), Gaps = 11/326 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + +   ++   ++ + Y ++   +  L + +  +   P+      +      +  +  
Sbjct: 8   VNRVVAALLVGGALIAAGYAIRHTVSCFLLSFVTAYLLDPVLVVMERR-GVRRPWGILFL 66

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              +    +   + L  +  L  +  ++ +    Q G  +           +A E W   
Sbjct: 67  YALLAVFSVFFFIVLVPFLSLRWEAFITGLPAYLQKGKQIVFAWKSRAVPPYAVEEWRWL 126

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                              +  +           +    +++   I +FF         +
Sbjct: 127 FDTAAGQADK--------LLAKLGAGVYAAAEGLVFNLFNLVLAPILVFFMLWYKKEFME 178

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +            + R V + I     G  ++++   ++   A ++ G+   +  G+
Sbjct: 179 TAAAWLPASRREVLLALGREVNESIGGYIRGQFMVSVIVAVLSTVALFVIGIDYPIVNGI 238

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
              + +++P    I  T   ++       +      +    ++  F+    ++P +    
Sbjct: 239 FAGLASVLPFIGVILATLPPLFFAYVQYESGMVLLQVIGAFSVIYFLEGYLVKPLVFKES 298

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  L T   ++     MG  G+ +
Sbjct: 299 MDLNPLVTIIVVMVFGELMGFWGILL 324


>gi|15894017|ref|NP_347366.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15023611|gb|AAK78706.1|AE007588_4 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325508144|gb|ADZ19780.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 383

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 116/341 (34%), Gaps = 14/341 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSVMCLFIVP 77
           +   F P +    I F      + F  K          +    +   I+ V+   L I  
Sbjct: 38  IYSIFFPFILGGCIAFILNIPVTFFSKKLLNCKIKFIGKVVRKYNISISIVASCILIIGI 97

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW-----ASELWTKHLSHPQS 132
              +    +  + + +  +  A  + I   +   +    M               +   +
Sbjct: 98  FALISAIIIPNIIQTIKILPNAFDNSITAFQKFVNENSWMSKNVTSLVNNLNIDWNGILN 157

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              ++     ++        A+ F    +++ LS IF I  L    + G  +   L +  
Sbjct: 158 KVKITIITGASSVFMSTLGAATTFASTAIEFVLSFIFSIYILAQKNKLGTQVKMVLYAFF 217

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +        ++ ++      +   G   ++I  G++      +  +P  + + +I A  +
Sbjct: 218 KKQKVDSALEVLKLTSNTFSNFITGQCTVSIILGVMFFIVMTILKLPYAIEVSIIIAFFS 277

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP    I    +S+ LL+  N   A            + D  + P +VG  + LP +  
Sbjct: 278 VIPMIGSIIGFVLSVLLLLIFNPIKAGVFVFVFLAIKQVEDNFIYPKIVGNSVGLPSILV 337

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              +  G + +G+ G+ +   L ++  V+ ++ +    E K
Sbjct: 338 LVAITLGGKVLGVPGMIMSIPLFSVAYVLLRKEVYTRLEKK 378


>gi|320009827|gb|ADW04677.1| protein of unknown function UPF0118 [Streptomyces flavogriseus ATCC
           33331]
          Length = 358

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 105/352 (29%), Gaps = 21/352 (5%)

Query: 12  MRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  ++  +  V+++    LK    PVL AL+      P+     +    + +  A +   
Sbjct: 21  VLLLVAGVGAVAVWLSVTLKTAVTPVLLALLGTALLGPVQRWLTAH-GVNRSVAAGLTCA 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +++ +       +    +    ++V  +  A Q                W  + +     
Sbjct: 80  ALVAVVGGAGYIVVTALVDSGDQIVQSLKDAAQ----------------WVIDHFDIEGV 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +   L                 +      + +  ++  FFF RD    +   
Sbjct: 124 ANVDDLADNAKGLVEKFGASAAGGLLSGISLIGSLVTTSVLALLLTFFFLRDSDRAAHLA 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+         + + R   + +     G T IA+ + L +     +  VP    LG + 
Sbjct: 184 HSVAPRGTGDLVEAMGRRAFEAVEGFMRGTTFIALIDALCITVGLLILRVPGAAGLGALV 243

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     IS     +  L    I  A  +         +    L+P +    +++
Sbjct: 244 FVGAYIPYLGAFISGAVAVLVALADRGIVIALWVLGVVVAVQVLEGHVLQPVIQSRTVQM 303

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
                   L  G    GLLG+ +   L A    +  E         E    +
Sbjct: 304 HPAMIMIALTAGASVAGLLGMLLAVPLCAAAVGVIGELRKGYAAGGEGPEVS 355


>gi|329115312|ref|ZP_08244066.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
 gi|326695291|gb|EGE46978.1| UPF0118 inner membrane protein YdiK [Acetobacter pomorum DM001]
          Length = 360

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 140/347 (40%), Gaps = 7/347 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               ++      ++L +++ L+ F   ++ A  I  T WP+          S        
Sbjct: 18  TRPVLVALFACTLVLGAVWILEPFIPALIWAGTIAVTMWPLLLRLQGWLHGSRKMAISCT 77

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ-HGIPVPRWLSDIP-GGMWASELWT 124
            +  + LF++P        +       + +          +P  L  +P  G +  + W 
Sbjct: 78  LLVALALFVLPFWMAVSTVVKHADAFSNIIPYIKSLKLPDLPEKLLHLPMVGEYLGKWWQ 137

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      +          + ++  +A   GM+ + + L++I + +    F      +
Sbjct: 138 HLQNMKPMDIVQQAVPQPDQIMHYLMSYAGSIGMLAVQFLLTLIILTV----FLAKAEYL 193

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
               + L   L     + +  +  + IR   LG+T+ AI E LV G   +L GVP    L
Sbjct: 194 ITTSERLVGTLSGKRGQNMLELAVRTIRGVALGVTLTAIVESLVGGGGMYLTGVPWASIL 253

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
             +T +  ++  G  ++     I++     +  A  L     + +F+ D  LRP+L+   
Sbjct: 254 TAVTFMACLLQAGPGVTLFPAVIWVYFDKGVMPAIVLLAITFLTIFL-DNMLRPYLIRKQ 312

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             +P +    G++GG+  +GL G+F+GP+++++   + K+ + + +E
Sbjct: 313 ADVPLVLIMMGVIGGLAALGLAGIFVGPMILSITYTLIKQWMESNQE 359


>gi|317127498|ref|YP_004093780.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315472446|gb|ADU29049.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 379

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 113/346 (32%), Gaps = 10/346 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + ++   I+  ++  L +L     P   A  + +   P+   F  K +  +    + 
Sbjct: 8   IIARFVLVIFILISVVWLLGWLFTISYPFWIAAGLVWMFIPLIRLFRRKLKLPNGLAVLT 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----------HGIPVPRWLSDIPG 115
           A +  +   I     + +  ++ ++ + + V    +          +   +P W      
Sbjct: 68  ALLIGLGTLIAFFTGIIFLIIIGVRRISTYVPEWIEVSSKQIQLFFNQSILPIWHRITGF 127

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
               +    + L    +        +       +        +    + +  +F+ +A +
Sbjct: 128 TDSLTVEQQETLQGGITQLGSQVAAMFGEMGQGLADALGVLLVTVPSFLIGFLFVFLAFY 187

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D  +++ ++ +     F     +  +I    +        I+     +++     +
Sbjct: 188 FIGKDWDTLTTRVKNTVPPSFIKKGTEFRKIFRHRVLGFLRAQLILMGIASIIVFIGLTI 247

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             V     + +   I  ++P     +     +  L                     V +T
Sbjct: 248 LRVDYAFNIALFVGIAEILPYLGSGTILIPWLIYLFLSGNVKLGIGIAVVYGVTIAVRQT 307

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + P ++   + L  L     L  G +  G+LGLFIGP ++ ++ ++
Sbjct: 308 IEPKILSSSMNLNALAVLLSLFIGFQIFGILGLFIGPFILVILVIL 353


>gi|73670231|ref|YP_306246.1| hypothetical protein Mbar_A2764 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397393|gb|AAZ71666.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 346

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 131/345 (37%), Gaps = 6/345 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   +I  + ++  Y    +   +  ALI+     P+Y   I + +    F A++  + 
Sbjct: 8   ALALLIIAVLTVLITYATLPYLNYIFGALILFIIFRPLYHFLIRRLKIRKQFAALLIIII 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +VPL FL    + E+++L+               +L+D    +         ++ 
Sbjct: 68  SIFVVLVPLYFLLNTIIDEIEQLLVNQASILASIEAGGHFLTDSLLRLNIP------INI 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q+        L +  +++   F            + ++ M   L++ + +  S   +  
Sbjct: 122 FQAKIEEKAMELASQAVNYTSLFIVESIQNLSHQSIGLLIMYFLLYYLFTEEDSDFMRQV 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+           +     K++R+T +    +A+ +G +L   + +  +      G I A
Sbjct: 182 SVAVPFNEENTATLLDEFRKIVRTTLIASGAVALVQGGILTIVFVIFNIQGAFLWGFIAA 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I++ +P          +  +      + A    L   I + ++D  LRP +     ++  
Sbjct: 242 ILSFLPVVGAPFIWVPATIVQFFQKDYTAAIAILAAGIFISVIDNFLRPIIQKRVGEIHP 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             +  G+V GV   GLLG+ IGP+L++   +  +         KE
Sbjct: 302 FLSLLGVVIGVSLFGLLGIVIGPLLLSYFVLTVQMFSREYLSGKE 346


>gi|186681974|ref|YP_001865170.1| hypothetical protein Npun_F1538 [Nostoc punctiforme PCC 73102]
 gi|186464426|gb|ACC80227.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 388

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 116/332 (34%), Gaps = 13/332 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            + V   +       ++ A ++ F      S            +A++  +  + + +   
Sbjct: 35  ALSVFFNYFHSLIVILVGASVLAFLLNYPVSWMEHH-GAKREQVAILVFLLALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + + ++LV+++      G      L++        +  T  L       ++  
Sbjct: 94  VTLVPLALTQAQQLVARLPELIDSGRSQLMILNE--------KAETFGLPINLDALVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  I        ++ +   L I+  ++  F+  + G  + + L       F A
Sbjct: 146 NDRVKGQLQAIAGQVLNLAVVTVTSLLDILLTMVLTFYLLQHGSELWESLVEWLPSKFRA 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +    V    ++ F+   I++      L   +    VP  +  G+   +MA++P G 
Sbjct: 206 PFSQ---TVRLSFQNFFITQLILSTCMASALIPTFLWLKVPFGLLFGLTIGLMALVPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   A++  L+   +      + +   I   I++  + P ++G    L  +     ++ 
Sbjct: 263 SV-GIALTTLLVALQDFSMGVRVLIAAVIVQQILENLIAPRILGSFTGLNPVWILISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G R  GLLG+ +      +I        +A +
Sbjct: 322 GARIGGLLGVIVAVPTAVVIKTALSALRLAGE 353


>gi|315126793|ref|YP_004068796.1| integral membrane transport protein [Pseudoalteromonas sp. SM9913]
 gi|315015307|gb|ADT68645.1| integral membrane transport protein [Pseudoalteromonas sp. SM9913]
          Length = 347

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/345 (14%), Positives = 110/345 (31%), Gaps = 22/345 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++ +  + I+L  +        P + A  I     P+ + F   +     
Sbjct: 1   MASLTGVNKSLIIFAALVIVLAGIKAASAIVIPFILAAFIAIICSPLINFFARYRIPK-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA V V+ + +   + L       + +   ++            WL D+       
Sbjct: 59  ---GIAVVLVVLIIMGLGVSLGGLVGQSVNDFSKQLPEYKAQLKEEFVWLVDMASQYNIL 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               + LS                    +   A+           ++  +I+ + F   +
Sbjct: 116 INKEQILSMFD--------------PGKMVDVATNMLTGLGSVMANMFLIILTVVFMLFE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + +++    +   P    K        I S     T++++  G++ G   W+  V  
Sbjct: 162 GPILGKKIHLALDD--PDSKIKQIDRFLDSINSYLAIKTLVSLATGVIAGFYLWILDVDY 219

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  GV+  ++  IP    I     ++ L  I      A  +         ++   + P 
Sbjct: 220 FVLWGVLAFMLNYIPNIGSIIAAVPALLLALITQGPLVAGLVGAGYLTINTVMGNIVEPK 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +G  + L  L  F  L+     +G +G+ +   L  ++ +  + 
Sbjct: 280 YMGKGLGLSTLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALEA 324


>gi|300865893|ref|ZP_07110634.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336102|emb|CBN55792.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 350

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 105/337 (31%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++ +   L  L+ ++       +A+I+      +                 +A   ++
Sbjct: 7   IGFLALLASLYILWKIRTIVLLFFTAVILAIALNRLVRRLQQ-SGAKRGVAIALAIAILV 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               V L  +      + +EL   V L  +       WL     G     L +      +
Sbjct: 66  TASAVLLTLIVTRLSNQFQELSQLVPLGIEQLRIWSNWLQARLPGQIVDNLPSIDDLTQE 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                           +      ++   +L   ++ + + +       +       + SL
Sbjct: 126 ----------IQTFFRWTTSHIYQWFSNYLSLIINTLLITVLTIMLLVNPMPYRHAIISL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I     + +     G+ +     G+      ++  VP     G++  I+
Sbjct: 176 FPAFYRQRADEIFSKCEEGLMGWLAGVALSMSFIGITSIIGLFVLQVPLPFVNGLLAFIL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP    I      + L +  +   A  + L   +   I    + P ++   + L    
Sbjct: 236 ALIPYIGAILSVIPPLLLALLDSPSKAGAVLLLYFLIQQIEGNLVTPIIMEKQVSLLPAY 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T   L       G LGLF+   ++ +I +  KE ++ 
Sbjct: 296 TLAILTAFGFFFGFLGLFLALPILIVIQIWVKEVLIR 332


>gi|313889430|ref|ZP_07823078.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313122262|gb|EFR45353.1| putative membrane protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 374

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 111/337 (32%), Gaps = 12/337 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFI----------SKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            P L    + +    + +++                      ++A  + + LF   +  +
Sbjct: 40  LPFLYGAALAYIINIVMTAYENLLNRLVKTNRFFHLRRGIAMILAYATFIALFFWIVSIV 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  ++S    + +  I        I   +       K      +         
Sbjct: 100 IPDLIASINMMLSFDTGSVKQYIHDLSHNKIIAKVIHYFGGDAKITQTVSNYSQQLLKQF 159

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            +  +  I    +      ++  ++ +F    L    +     +  +D+    ++     
Sbjct: 160 LS-FLTSILTSMTVIASAIINVFVAFVFSFYVLGNKEQLCRQGNILVDTYTG-IYAQRIH 217

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I  ++       F+G TI A+  G +     +L  +P    +GV+ A  A+IP      
Sbjct: 218 YIVGLLHNRFHGFFVGQTIEAVILGSLTALGMFLFKLPFAATIGVLVAFTALIPVVGAYI 277

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   L++  ++  A    ++  I        + P +VG  IKLP +     +  G  
Sbjct: 278 GVTIGFILIMTQSLSQAIFFVIFIVILQQFEGNLIYPRVVGSSIKLPGMWVLMAITIGAS 337

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             G++G+ I   L A    + K++I   +  K+   S
Sbjct: 338 LKGIVGMIIAVPLAATFYQMIKDNIDKKQAIKKNQVS 374


>gi|332188216|ref|ZP_08389944.1| hypothetical protein SUS17_3356 [Sphingomonas sp. S17]
 gi|332011715|gb|EGI53792.1| hypothetical protein SUS17_3356 [Sphingomonas sp. S17]
          Length = 356

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 89/329 (27%), Gaps = 20/329 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              + + L+                     +  +I  ++V    +            ++ 
Sbjct: 48  LLVIFAGLVFATLLDGGVRLLGRVLPIGRGWRLLIVVLAVTVFLLGTFYLTGVEVTQQVT 107

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           +L S +                +P     + L  + +                       
Sbjct: 108 QLRSTLETQASRVADWLAEQGLMPKTSDINGLLKQSMGS--------------------I 147

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
              + +    +    S+  ++I   F   D    ++ L  +        +      V   
Sbjct: 148 GRLTSWVGTAVGAVTSLFMILIIGLFLAMDPDGYARGLQWMVPRSARDEFAVTQERVMTT 207

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           +R    G  +    EG++ G A  + GVP  + LG+I  I+A IP    I    + + + 
Sbjct: 208 LRKLLAGRLLGMAFEGVLTGIALMIGGVPMALLLGIIAGILAFIPNIGAIITGVLMVAVG 267

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                           +        + P +    + LP   T    +      G++GL +
Sbjct: 268 FSAGTDAGFWAIGTYLVVQTFDGYVVVPMVAKRTVDLPPALTLSTQIMASALFGIMGLAL 327

Query: 331 GPVLMALIAVIWKESIMAIKENKEKISSN 359
              + A+I    +         +    + 
Sbjct: 328 ADPMTAMIKSALQRRSERQAAEEGMADAE 356


>gi|296125128|ref|YP_003632380.1| hypothetical protein Bmur_0071 [Brachyspira murdochii DSM 12563]
 gi|296016944|gb|ADG70181.1| protein of unknown function UPF0118 [Brachyspira murdochii DSM
           12563]
          Length = 435

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/358 (12%), Positives = 110/358 (30%), Gaps = 15/358 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  ++    L  +       AP +  + I +   P+ +   +K         +   +
Sbjct: 71  KTSIVLILALFTLWVIKEAGYLVAPFIWGIFIAYMFDPLITKMQTK--IPRIAAVLFIFI 128

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + ++  +F+    + EM+ +   +             L           +      
Sbjct: 129 PLIIIAVIFFVFILPRTIEEMEVISKSLPEYVDKIYNSISLLLISVSDKLNGSIGKSFDI 188

Query: 129 HPQSLKILSETFLKTN----------GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                    + FL  +           IDF  +  S    IF       + +    F+  
Sbjct: 189 DMAIDAASIKDFLFGSDGIFTLIYKKMIDFRFQNISSLTTIFSVIFSYFVILPFVTFYLM 248

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +I  ++  +    +     +I +    +I     GMTI+A+   ++      +   
Sbjct: 249 LDFQNIKSKIIKIIPMRWQTSISEIVKKSNSIINGYVRGMTILALSFFIISYILLSVTNT 308

Query: 239 PSHVALGVITAIMAMIPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
                L ++  I+  IP   P +      +   +        A  + +       +    
Sbjct: 309 RYAFILALLRGILNYIPFIGPFAAFVTALLVGIITENIWWHGALKICIIFGFVQILDSGL 368

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + P ++G  +K+  +   F  + G    G LG+        ++ ++ +        +K
Sbjct: 369 MAPKILGKSVKIHPIAVMFSTIIGGVLFGFLGILFSVPFCGIVLLVVQNFFNKYYHSK 426


>gi|209524938|ref|ZP_03273483.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
 gi|209494587|gb|EDZ94897.1| protein of unknown function UPF0118 [Arthrospira maxima CS-328]
          Length = 351

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 111/336 (33%), Gaps = 18/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +   +  +  + + +      + A I  F               S T   V+  +
Sbjct: 20  RYLLLFAFGWAFIQFIAYFQTIIIVFVFAAIFAFLLNYPVQWLQKYT--SHTVAVVVVFL 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L I  +  L    + E+++ VS+        + +   +  +               
Sbjct: 78  TSLLLLIGLVATLGLAIVSELQQFVSQAPDLLDSFVNLVDQIETLLKNANIQVDLDFLQE 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +              +  +  F +      L   +  I +++  FF   +G  +    
Sbjct: 138 DLKQE------------VSNLFSFGTAAVGKILSGLVEFIIILVVTFFMLLNGEELWASF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S          + ++  +       F G  I+++  G      Y +   P  + L  + 
Sbjct: 186 QSFFPS----NIEDLTLSLRNNFLGFFRGRLILSVFFGFSAFFVYLILQAPYPLFLATLV 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IPG        +S  +++   I  +  + ++  +   I +  L P ++   + L 
Sbjct: 242 GVFDLIPGVGATIGIILSAIIVLPKGILISLQVIVYCVLLQQIEENILMPRIMQNSVNLN 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +  FF L+ G R  G LGLF+   + A+I      
Sbjct: 302 PVIIFFALLLGARIAGFLGLFLSIPIAAVIVGFVNI 337


>gi|159903260|ref|YP_001550604.1| permease [Prochlorococcus marinus str. MIT 9211]
 gi|159888436|gb|ABX08650.1| Predicted permease [Prochlorococcus marinus str. MIT 9211]
          Length = 359

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 111/339 (32%), Gaps = 3/339 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    +    + L+ L+     + + +++      +        +       ++   S +
Sbjct: 7   LTLAALITSTLLLWNLRSVLIIIFAGIVLSIALCTLIGKVQLTLQLPRAISFLLVVTSGL 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F + ++ +      E ++L+ ++  A +    +              E     L    
Sbjct: 67  LIFALSMVIVIPQFTEEFQQLIIQLPSAAKELWQISVDSIGKVSEFVYGENAKDILKDSF 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQL 188
             K  +      +  + I     R   +  +     +  IF+I           +  +  
Sbjct: 127 LSKDFTALPDGASLANGITDSLKRILNLAGNLGLGIVQFIFVISISLMIAIQPEAYKEVF 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +    + I       + +  L + I +    ++ G + ++ GV   VA  ++ 
Sbjct: 187 ILLIPSFYRRRARTILVKCGNSLSNWMLAVIISSSFVAILAGVSLYILGVKLVVANALLA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +IP   P   T   + + +  N + +  +     I   +    + P ++   +KL 
Sbjct: 247 GILNIIPNIGPTLSTIFPMSVALLDNPWKSLAVLGIYIIIQNLESYVITPSVMQHQVKLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              T           G +GL +   L  +I ++ KE ++
Sbjct: 307 PGFTLTAQFIFTIIFGPIGLLLSLPLAVIIQILVKEVLI 345


>gi|148272573|ref|YP_001222134.1| AI-E2 family membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830503|emb|CAN01438.1| conserved membrane protein, AI-E2 family [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 352

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 117/340 (34%), Gaps = 10/340 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I  +L  L      V +A+ +     P+ +    K         ++  + ++     
Sbjct: 20  ALVIGGALVSLGTVLTYVGTAIFLALGIDPLVTFLERK-GVPRPVAILVIFLVLLGSLAG 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            LL +    + +   LV+++V   Q          D       S +  +          L
Sbjct: 79  VLLAVIPVVVNQASALVTQIVQYAQSVS------GDQFIENLQSFVPREVFDVQTGADQL 132

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +     + +  I            ++   ++ ++I   +F     S    L  L     
Sbjct: 133 VQYLSNASNVATITGNVITVAFTIGNFLFGLVIVVILTMYFTASLNSFKSGLYKLVPATR 192

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
            A +  I+  + + +    +G   +A+  G++      + G         I  + +++P 
Sbjct: 193 RARFADIAEQITQSVGRYVMGQVGLALCNGVLSFVYLSIVGAALPAVWAFIAFLFSLLPL 252

Query: 257 GAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
              I+      +   +L+  ++     + ++  + + I    L P ++   +K+P +   
Sbjct: 253 VGTITGSALIVLGQIVLLPESMNTWIAVAIYYLVYMQIEAYVLSPNIMNRAVKVPGVVVV 312

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              + G   +G+LG  I   + A + +I ++  + ++  +
Sbjct: 313 IAALTGGTLLGVLGALIAVPVAAAVLLIIRQVAVPLQNER 352


>gi|225848452|ref|YP_002728615.1| membrane protein [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644073|gb|ACN99123.1| membrane protein [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 354

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 140/343 (40%), Gaps = 4/343 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
                   +  + +       F   +L +L+     +P +    SK + S    ++I+T+
Sbjct: 10  NIFFIISFLLFLFLGYVIFSPFVGLILVSLLFVVIFYPFHLKIKSKVK-SDILSSLISTL 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHL 127
           +++   ++PL  + ++   E+ +L   V     +       L  +P       ++  +  
Sbjct: 69  TILTFILIPLSLIVFFLAKEIIDLYPLVSQYISNPNYFVEKLKSVPYLYNLYLKVQNEIF 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           ++  S    +               A  F    + + + I  +I+ +FF ++DG  + + 
Sbjct: 129 NNVNSNLHETFINYLKGFASTFFDIAKGFLTNLILFSIGIFILILNIFFLFKDGEKLYKL 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S+   L       + +     +++  LG   +A+ + +       +AGV   + +  I
Sbjct: 189 VHSVIP-LDKEEKDYLFKNSYLAVQAVILGSVFVAVAQAVATLIGLLVAGVDYAIIIAFI 247

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T + A IP G   + +  V+IYL    +       FL+G   +  VD  +RP +VG  I 
Sbjct: 248 TFLAAFIPFGGASLVWVPVAIYLFATKSFIAGLLFFLYGTFVISTVDNIVRPIVVGSKID 307

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +  +  FF ++GG++  G LG+FI PV++A+I           
Sbjct: 308 IHPMILFFAILGGLKAFGFLGIFIAPVIVAVIDAFIMLYKKRY 350


>gi|229086953|ref|ZP_04219110.1| hypothetical protein bcere0022_35260 [Bacillus cereus Rock3-44]
 gi|228696329|gb|EEL49157.1| hypothetical protein bcere0022_35260 [Bacillus cereus Rock3-44]
          Length = 335

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/320 (14%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++  K    P   A  I +   P+      K+    T   ++  +         +    
Sbjct: 18  IIFVFKVAITPFFIACFIAYLLHPLIEKLH-KEGMPRTLAILLIYILFFGGIGYGIYKGT 76

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +++E+  +     +        ++            T +       K+       
Sbjct: 77  PVVISQLQEINKQFPQFMKMYDSWMDGVTQ----------QTDNFPSFIHEKVKQIFAGI 126

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              I  +           LD  L I  +   +F+  +D          +  + + +  + 
Sbjct: 127 EMKIQTLLDKVMSTARGVLDSLLIIFLIPFIVFYILKDYGEFYHIFWKMVPNKWRSTGQV 186

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +++ + K + S   G   + +  G V   A+W  G+   + LG+I  +  +IP   P+  
Sbjct: 187 LAKEIDKSLGSYIRGQLFVCLVLGGVSVLAFWFIGMKYPLLLGIIVGVTDIIPYFGPVLG 246

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              ++ +    +        +  AI  F+    L P++VG  +++  +     L+ G   
Sbjct: 247 AIPALMIAATISTNLFIKAGIALAILQFVESNILSPYIVGKSLRMHPVIIMLALLIGGEI 306

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G++GL I   ++A+I  + 
Sbjct: 307 GGIVGLLIAVPILAVIRTVI 326


>gi|188996846|ref|YP_001931097.1| protein of unknown function UPF0118 [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931913|gb|ACD66543.1| protein of unknown function UPF0118 [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 355

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 69/348 (19%), Positives = 140/348 (40%), Gaps = 4/348 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
                   +  + +       F   +  ++++    +PI+     K  ++S   ++I+T 
Sbjct: 10  NIFFIISFLLFLFLGYVIFSPFIGIITVSILLVVIFYPIHQKIS-KIVKNSVLNSLISTF 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHL 127
            ++   ++P   + ++   E+ EL   +     +   +   L + P       +L   +L
Sbjct: 69  IILTTLLLPFSLILFFLTKEIIELYPLIADYITNPNLIVEKLKESPYLYKLYLKLQEFYL 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   S    S           +  FA  F    +   ++I  M I +FF ++DG+ +   
Sbjct: 129 NKLDSNFHDSIINYLKQFTAVMFNFAKTFLSNVILIFIAIFIMAITIFFLFKDGYKLYNL 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S+   L       +       +++  LG   +AI + +     + +A V   + L  +
Sbjct: 189 VYSIIP-LEKEEKDYLFSNSYAAVQAVILGSVFVAIAQAIASLIGFLVADVEYSLVLTFL 247

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T   A IP G   + +  V+IYL++   +       ++G   +  VD  +RP +VG  I 
Sbjct: 248 TFFAAFIPFGGASLVWVPVAIYLMVSKGLLVGILFAVYGTFVISTVDNIIRPIVVGTKID 307

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +  +  FF ++GG+ T G LG+FI PV++ALI               E
Sbjct: 308 MHPMIMFFAIIGGLSTFGFLGIFIAPVIVALIDAFIMLYKKRYGIENE 355


>gi|75906634|ref|YP_320930.1| hypothetical protein Ava_0409 [Anabaena variabilis ATCC 29413]
 gi|75700359|gb|ABA20035.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 387

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 117/340 (34%), Gaps = 13/340 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            I     +       ++ A ++ F      S    +       +A++  +  + + +   
Sbjct: 35  AISAIFDYFHSLIVILVGASVLAFLLNYPVSWMAHR-GARREQVAILVFLLALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L++    +                 ++  
Sbjct: 94  VTLFPLALTQAQQLVARIPELIDSGRSQLMMLNEKAETVGLP--------INLDALVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  I        ++     L  +  ++  F+  + G  + Q L       F A
Sbjct: 146 NDRVKGQLQAIAGQVLNLAVVTFTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPTKFRA 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +    V    ++ F+   I++      L  A+    VP  +  G+   IMA++P G 
Sbjct: 206 PFSQ---TVRLSFQNFFITQLILSTCMASALIPAFLWLKVPFGLLFGLTIGIMALVPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   A++  L+   +      + +   I   I++  + P ++G    L  +     ++ 
Sbjct: 263 SV-GIALTTSLVALQDFSMGVRVLIAAVIVQQILENLIAPRILGNFTGLNPVWILISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G R  GLLG+ +      +I         +   N+ +++ 
Sbjct: 322 GARVGGLLGVIVAVPTAVIIKTALTALRPSSVNNETEVTD 361


>gi|256395388|ref|YP_003116952.1| hypothetical protein Caci_6257 [Catenulispora acidiphila DSM 44928]
 gi|256361614|gb|ACU75111.1| protein of unknown function UPF0118 [Catenulispora acidiphila DSM
           44928]
          Length = 389

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 84/312 (26%), Gaps = 21/312 (6%)

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                +   S +  A +A   +  +    +  +    +     +   +   ++       
Sbjct: 95  RRLTGRIR-SRSLAAGVACALLAGVVGGTVWLVARAVVDAAPGIGRALGRISRRVGAGSE 153

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
                                           L +     +           +      +
Sbjct: 154 -------------------EDLLQSAANGLRSLGSEANSALIAGVVHGVSTAVQILAGSV 194

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
             ++ ++F  RDG                    +++R     +     G T IA+ + ++
Sbjct: 195 LSVVLIYFLIRDGGRFEAFASRSLPEGTADVAVRMARRAWDALSGFMRGTTFIALIDTVL 254

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +     + GVP    L  +  + A IP     +S     +  L  G +  A  +      
Sbjct: 255 ILIGLLVLGVPGAPGLAALVFVGAYIPFIGAFLSGAVAVLVALGDGGVGKALWVLGVVVA 314

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    L+P +    + L        + GG    G+LG  +   L A  + +  E   
Sbjct: 315 VQVVEGNVLQPVIQSRTVSLHPAVVMLAVTGGTAVAGILGALLAVPLTAAASGVLAELRE 374

Query: 348 AIKENKEKISSN 359
               + E   ++
Sbjct: 375 MAGRSGESSEAD 386


>gi|209520430|ref|ZP_03269191.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209499122|gb|EDZ99216.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 364

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 127/336 (37%), Gaps = 12/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I    ++ ++ V +Y        ++ A+   +  +P+ +     +      +A IA V
Sbjct: 10  RKIWTAFLIGLLFVIIYIASTTVLVIVYAVFFSYLIYPMVALVERVRPRRVPRVASIAFV 69

Query: 69  SVMCLFIVPL--LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V+ + ++ +           +   LV ++    +         + +P   +   L  + 
Sbjct: 70  FVVVVALLAVVGSVFGVELQDQASRLVKQLPALLRT-----DVQNRLPLPHFLEPLRERI 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +   +S          ++    + R      +      + ++ + I  F   +DG  +  
Sbjct: 125 VDFVRSQIET-----GSDKAVPLARSVGLGVVHAASNVIYLVLIPILSFLLIKDGEQMRD 179

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +L        W +I   V  ++      +  +++   L  G A+ L GVP    L V
Sbjct: 180 AFLALLNRPHRTLWSEIVVDVNVLLSKYVRALLFLSLATLLCYGVAFSLLGVPYAFLLAV 239

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             A++  +P   P++  A+++ + +     +   L ++  +     D  L P+L+   ++
Sbjct: 240 SAALLEFVPFAGPLAAIAITLVVAVFSGYPHLLWLLIFIGLYRLFQDYVLNPYLMSEGVE 299

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +       GL+ G +  G+ G+F+   ++A + ++ 
Sbjct: 300 VSPFLVIVGLLAGDQLGGVAGIFLAVPVIATLKIVV 335


>gi|326795182|ref|YP_004313002.1| hypothetical protein Marme_1915 [Marinomonas mediterranea MMB-1]
 gi|326545946|gb|ADZ91166.1| protein of unknown function UPF0118 [Marinomonas mediterranea
           MMB-1]
          Length = 345

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 103/338 (30%), Gaps = 22/338 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q ++ +  + II+  L        P + ++ I     P+ SS   KK         ++ 
Sbjct: 8   TQWLVGFAALIIIIAGLKSASQIVVPFMLSVFIAIICAPLMSSLRRKKVP-----TWVSI 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ L +  L  +       + +  + +    +        L      +     + +  
Sbjct: 63  LIVVFLILGGLGSIALLVGSSLDDFSNALPGYKERFGTELAKLIAQLNTLGLQISYDQVK 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +              + +       +  G +  +  L ++ ++  LF        +   
Sbjct: 123 GYVD----------PASLMQMFANALTSLGGVLTNLFLVVLTVVFLLFEAVELPKKLHIA 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           LD+    L               +    +  T ++   G  +     + GV   +  GV 
Sbjct: 173 LDNAHRSLAR------FDQFIVTVNRYLVIKTSVSALTGGAITIWLAVIGVDFPILWGVC 226

Query: 248 TAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  +P    I       +   ++     A    L  A    IV   + P  +G  + 
Sbjct: 227 AFLLNFVPNIGSIIAAIPAIMLAFVQLGTLGAGLTALGFAAVNLIVGNIIEPRYMGKGLG 286

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  L  F  L+      G +G+ +   L  ++ +  + 
Sbjct: 287 LSTLVVFLSLLVWGWVFGPVGMLLSIPLTIIVKLALEA 324


>gi|296127433|ref|YP_003634685.1| hypothetical protein Bmur_2416 [Brachyspira murdochii DSM 12563]
 gi|296019249|gb|ADG72486.1| protein of unknown function UPF0118 [Brachyspira murdochii DSM
           12563]
          Length = 378

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/357 (18%), Positives = 136/357 (38%), Gaps = 14/357 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPV----LSALIIGFTSWPI--------YSSFIS 53
           +N   I     +  I +S++ +     P       A++      P+        Y     
Sbjct: 1   MNKNNIGYIFFIAFIFLSIFIMYKLLKPFGMIIFFAVVFYVVLNPLFIKAMGKSYKKKDK 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
                   LA++ +++ + +F+VP   L Y  ++++ ++ +  +    +        +  
Sbjct: 61  LSAIKKNTLALLFSLTSLIIFLVPTSILAYTIIVQLIDISNIGIKYFMNLDVNEVLRNSN 120

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                 S      +         S     T    ++ +  +        +  S IFM+ +
Sbjct: 121 INNFLKSLPIDVSMETILKRIQDSSLSNLTFISSYLTQNVASLLKSTGGFVSSFIFMMFS 180

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFFF+ DG  + +Q+ +L       Y+ ++ + V + I+    G     + +G+     Y
Sbjct: 181 LFFFFIDGEYLMEQVRTLVPIE-RKYFDRLIKQVSEGIKGIVFGNLFTGLFQGVCAFIVY 239

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + GV +      +T I + +P     I +  + +  +I G +  A    +     + I 
Sbjct: 240 SVFGVANSFTFAFLTIIASFMPIIGTTIIWLPLGVLFIINGQLIKAIIFVICSWFFITIP 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           D  +RP L+G  I+L  L  FF ++GGV   GL G+ +GP+   L   I K      
Sbjct: 300 DNFVRPLLLGNRIELHPLFIFFAILGGVLFFGLSGIILGPLTFILFFEIMKIFNEER 356


>gi|148258202|ref|YP_001242787.1| putative permease [Bradyrhizobium sp. BTAi1]
 gi|146410375|gb|ABQ38881.1| putative permease [Bradyrhizobium sp. BTAi1]
          Length = 372

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 107/341 (31%), Gaps = 16/341 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +    +   LY  KGFF P++ A ++G    P  +     +        +I    
Sbjct: 38  VALVILTAICVTGVLYVAKGFFLPIVMAFVVGTMLSPAANFLERHRVPRGIGAVLIVI-- 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                   L F+       + +  +++                          +      
Sbjct: 96  ---AVAAGLAFIIGLISAPVLDWTNRLPELATQLKAKLHVFDR---------PFAMWHEM 143

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   S     +  +            +   +   ++F    + F           + 
Sbjct: 144 QAAIGGGSAQAPPSLELPKFDWVQPTIEFLSPTFTEFLLFFATLVLFIASWRDLRRTLIM 203

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           + G+H       +I   +   + +  L +T+I  G G+  G A  L G+P+   LG + A
Sbjct: 204 TFGDHDARLRTLRILNELELHLGNYLLTVTLINTGVGVATGLACALTGMPNPAGLGALAA 263

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +  IP   PI+   V I + +             L  A   F+    + P ++G  + L
Sbjct: 264 TLNFIPIIGPIATFCVLIMVGLIAFPTLSGGMVAPLIFAAITFMEGHFVTPTIIGRRLAL 323

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             L  F  L       G +G F+   L+ +  ++ +  +  
Sbjct: 324 NALAVFIALAFWTWLWGPMGAFLASPLLIVALIVKEHLLPD 364


>gi|58580075|ref|YP_199091.1| transport protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58424669|gb|AAW73706.1| transport protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 389

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 109/336 (32%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +    +  +L+  +    P++ A+       PI                    +  +
Sbjct: 52  MVVLATLAVGYTLWAAQTIILPIMLAVFFALIGNPILRGLRKLYIPR--------FLGAL 103

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + L       +            A QH   +   + ++   +  +    ++ +   
Sbjct: 104 LILCLGLAGTVTLAVQLAGPAAEWAQQAPQHMQQIAHDVRNLTKPVMQANQAAENFARAA 163

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +      +    +D   +   R   +          +++  FFF   G S+ +   +L
Sbjct: 164 GGEGQRGVQIVRTQMDDPYKALVRTPKLAASVLA----VVLLTFFFMVYGESLQRHAIAL 219

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + 
Sbjct: 220 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLKIPLPEAILWGTVV 279

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 280 GLLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 339

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L    GL+      G++GL +   L+  I ++ 
Sbjct: 340 ISPLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVL 375


>gi|222152996|ref|YP_002562173.1| membrane protein [Streptococcus uberis 0140J]
 gi|222113809|emb|CAR41881.1| putative membrane protein [Streptococcus uberis 0140J]
          Length = 374

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 110/335 (32%), Gaps = 12/335 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMCLFIVPLLFL 81
            P L    + +    + S++                      ++A  + + +    +  +
Sbjct: 40  LPFLYGAALAYIVNIVMSAYEKLLSRFLRGNHLFHLKRAISMILAYFTFIAILFWIVSIV 99

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +  ++S    + +  I        +   +       +      +         
Sbjct: 100 IPDLIASINTMMSFDTSSIKELIRDLSHNKALARLINYVGGDAQVTKTISNYSQQLLRQF 159

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            +   + I    +      ++  ++ +F +  L    +     +  +D+     +     
Sbjct: 160 LSVLTN-ILTSVTLIASAIINVFVAFVFSLYVLGNKEQLCRQGNLLVDTYAG-KYAQRIH 217

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +  ++    R  F+  TI A+  G +     +L  +P    +GV+ A  A++P      
Sbjct: 218 YLVELLHDRFRGFFVSQTIEAMILGSLTAVGMFLFKLPFAATIGVLVAFTALLPVVGAYI 277

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   L++  ++  A    ++  I        + P +VGG I LP +     +  G  
Sbjct: 278 GVTIGFVLIMTQSLSQAIFFVIFLIILQQFEGNLIYPRVVGGSIGLPAMWVLMAITIGAS 337

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             G++G+ I   L A    + +++I   +  ++K 
Sbjct: 338 LRGVVGMIIAVPLAATCYQMIRDNIEKKQAIQKKQ 372


>gi|126659691|ref|ZP_01730820.1| hypothetical protein CY0110_29194 [Cyanothece sp. CCY0110]
 gi|126619036|gb|EAZ89776.1| hypothetical protein CY0110_29194 [Cyanothece sp. CCY0110]
          Length = 365

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/340 (15%), Positives = 122/340 (35%), Gaps = 17/340 (5%)

Query: 6   LNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              + ++ W+++ +        L ++ G  + +L+A +I F           K     + 
Sbjct: 7   RPQKILVTWLLILVTGWLTVKTLSYIGGLISLILTASLIAFLLNYPVRGL--KTVLPRSL 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +  + + I   + L    + + ++L++K+    + G      L           
Sbjct: 65  AATLVYLGAIFIVIFLGITLLPPVVNQGRQLITKLPGLLEEGQLQLITLQGFINAKKLPI 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 S            + + G   +            ++ + +I +I+  F+   DG
Sbjct: 125 DLQFLASQILDKVEAQTEDIASTGFGLVLGT--------FNWFIDLIVVIVISFYMLLDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + + +            ++  + K ++    G  I+ +   + L  A+ L G+P  
Sbjct: 177 EKIWKSIINFFSPQIRDV---LTTTLKKNLQRFLTGQLILGLFMAVSLTIAFRLLGIPFF 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   V   +M ++P             +LI  N + A  + +   I   + D  + P ++
Sbjct: 234 LLFAVFIGVMEILPFIGATLGIGTVTIILIFINWWLAVQVLVVAVIIQQVKDNLIAPRIM 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G    LP +  F  L+ G +  GLLG+ +   L  +I  I
Sbjct: 294 GNLTGLPPVMIFIALLLGAKIAGLLGVILAIPLTGVIKGI 333


>gi|158336770|ref|YP_001517944.1| hypothetical protein AM1_3638 [Acaryochloris marina MBIC11017]
 gi|158307011|gb|ABW28628.1| conserved membrane protein [Acaryochloris marina MBIC11017]
          Length = 351

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 120/351 (34%), Gaps = 21/351 (5%)

Query: 6   LNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           L    ++R++++F    +      + +G     + A I+ F           K+      
Sbjct: 13  LTNSVLIRFLLLFASSWATLQVFAYFQGILLIFIFAAILAFLLNYPTQWL--KRFLPHGV 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +  +  + L    L+ + +  + + +ELV+ V         + R    +        
Sbjct: 71  AATVVFMVGLLLLFGLLITILFAVLSQGQELVNSVTEFLNAMEQLSRQAEQMLAARDVQI 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +    +  +   I S               +       ++  + +I + +  FF   DG
Sbjct: 131 DFGAIEAKFRDQVIES------------IGSSVGVIQGIVNNLIDLILVAVVSFFMLLDG 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + L             + +  + +     F G  ++A+   +     +    VP  
Sbjct: 179 GRIWKWLLRGLPKASR---TRFTLAMKRNFLGFFWGRFLLALFFAVSSFFVFLSLSVPVP 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L V+  I  MIPG        +   +L+   ++ A  + +   +   I +  L P ++
Sbjct: 236 LILAVVAGIFDMIPGIGATIGIGLISLILLPQGLWRAMQVLIACIVLQQIEENILMPRVM 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              +++  +  FF L+ G R  GL+GLF+   +  ++  +           
Sbjct: 296 QNSLQMNPVVLFFALLIGSRLAGLVGLFLSIPIAGVLLSLMDNDTEEDDNE 346


>gi|119469341|ref|ZP_01612280.1| hypothetical protein ATW7_07809 [Alteromonadales bacterium TW-7]
 gi|119447205|gb|EAW28474.1| hypothetical protein ATW7_07809 [Alteromonadales bacterium TW-7]
          Length = 347

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 22/335 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++ +  + ++L  +        P + A  I     P+   F   K         IA
Sbjct: 10  VNKSLIVFAALVVVLAGIKSASVIVIPFILAAFIAIICNPLIKFFARYKIPK-----GIA 64

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V+ + +   + L       + +   ++            WL D+           + 
Sbjct: 65  VMLVVLIIVGLGVSLGGLVGQSINDFSQQLPEYKAQLKEEFIWLVDLASQYNILINKEQL 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +S                    +   A+           ++  +I+ + F   +G  +S 
Sbjct: 125 ISMFD--------------PGKMVDVATNMLTGLGGVMANMFLIILTVIFMLFEGPLLSN 170

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++        P    K      + I S     T++++  G+++    W+  V   +  GV
Sbjct: 171 KIHMAL--EDPDSKMKQIDRFLESINSYLAIKTLVSLATGIIVSVYLWVLNVDYFILWGV 228

Query: 247 ITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  +   IP    I       +  LI      A  +         ++   + P  +G  +
Sbjct: 229 LAFMFNYIPNIGSIIAAVPAVLLALITQGPLIAGMVAAGYLTINTVMGNIVEPKFLGKGL 288

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  L  F  L+     +G +G+ +   L  ++ +
Sbjct: 289 GLSTLVVFLSLIFWGWLLGTVGMLLSVPLTMIVKI 323


>gi|325290370|ref|YP_004266551.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324965771|gb|ADY56550.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 369

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 113/336 (33%), Gaps = 3/336 (0%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
            + ++   L  L   F+P +  +I  F   P+             + +++A   ++ L I
Sbjct: 37  FLPVLGSVLSRLFSAFSPFILGIIFAFLMEPLVQKLCRNFRIKRVYSSILALSCIVFLMI 96

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + ++        E+ +L +      ++ +       D            ++     S +I
Sbjct: 97  LLMIIAGNRLYHELADLTAAFPGLYENNMAFVGNQIDNIEKYIRLNPEIQNALKSSSQEI 156

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +                     + + I+ ++++         ++ +      +  
Sbjct: 157 FSYAQVAVKNGSI---GLLNILGSLPGFLVVIMVLVVSTLLTSISYPAVKEWFFRRFKEP 213

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             +  + ++  +   +       +I+     LV+ +   + G      LG++T +M ++P
Sbjct: 214 LASKTRIVAAELGSALIGFLRAESILLSVTSLVVITGLLIIGNEYAFTLGLLTGLMDLLP 273

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P         ++   +        L       ++ + L P ++   I L  LPT   
Sbjct: 274 VIGPGVIFIPWAIIVFISSGIGPALKILAVYAAATVIRQILEPKIMSHNIGLHPLPTLIS 333

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +  G+  +G  G+ +GP ++ +     K  +   KE
Sbjct: 334 MYVGLNLLGAAGIILGPTVIVIYEACRKAGLFNRKE 369


>gi|152965066|ref|YP_001360850.1| hypothetical protein Krad_1098 [Kineococcus radiotolerans SRS30216]
 gi|151359583|gb|ABS02586.1| protein of unknown function UPF0118 [Kineococcus radiotolerans
           SRS30216]
          Length = 396

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 1/226 (0%)

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
             W +       S   S  +       ++  D I   A+                + A F
Sbjct: 122 ESWLASGPLNLSSATISGYVDQVEQAISDNRDAIVAGATTVAATAGHLVAGFFITLFATF 181

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F+  +G  I   L  L            +R     +        ++A+ +G  +     +
Sbjct: 182 FYLLEGRRIWSWLLHLMPQPARDPLDDAARQSWLTLVHYMRATVVVALVDGAGVAIGAAV 241

Query: 236 AGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             VP  V LG++  + A IP    +       +  L+      A  +     +   +   
Sbjct: 242 LQVPLAVPLGLVVFLGAFIPIVGALLSGVVAVLVALVAQGPVIALIMLGVILLVQQVESH 301

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L+PFL+G  + +  L     +  G    G++G      L+A++  
Sbjct: 302 LLQPFLMGRAVAVHPLAVILSVAAGATVFGIVGALFAVPLVAVLNT 347


>gi|256829961|ref|YP_003158689.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256579137|gb|ACU90273.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 396

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/358 (10%), Positives = 107/358 (29%), Gaps = 21/358 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   ++F  + S   L       L  ++I     P  S   +           +     
Sbjct: 18  IILGAVLFAGIQSFTLLSHILLSFLLVMLISLALNPAISRMRAWTGG-RALPTGLILAGF 76

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++            +  +  ++    +        +                    
Sbjct: 77  LSILVLTGWAFLGPMQTSITNISKQLPGYWERLQKPLIMMEQRAAISEEKLQAEVTTEIA 136

Query: 131 QSLKILSETFL-------------------KTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           ++ ++  E  +                    +  +       +          + ++ + 
Sbjct: 137 RAERLAGEPVVPVAPQKPPAPEDSGSLRSSLSEMLGEAVSSFTSVAFNGTQILIVMVTVF 196

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             +FF   +   I   + ++           +++ +          M +  +  G+++  
Sbjct: 197 FGVFFTLLNPRPIVGVIFAIVPVRHHDKALAVAQRIGMFAPRWAGAMLVGMVTIGMLVFL 256

Query: 232 AYWL-AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             W   G    + LG+I  I+  +P   P   +  ++ L +         + L       
Sbjct: 257 TMWPIFGFTDALVLGLIAGILEAVPFLGPTLSSIPALLLALGMGGMTTLWVALIYVAIQI 316

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           + +  + PF++ G +KL      F ++  V   G+LG+ +   L+A+ +++ +E    
Sbjct: 317 LENNIIVPFVMAGGMKLHPTAVIFSMLLCVGAFGVLGVLVAAPLVAIASILHEELYRK 374


>gi|325840825|ref|ZP_08167189.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|325490195|gb|EGC92532.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 386

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 111/338 (32%), Gaps = 17/338 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK--------------EESSTFLAVIATVSVMC 72
                +P+L A +I +  +                          + T   ++  + V  
Sbjct: 49  FLSVISPILYAFVISYILYRPLMFIERNFKKGFKKISKKGISNGMARTISILLLAILVFF 108

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                +  +F   +  +  ++  +            W++++   + A  +  + +     
Sbjct: 109 AIYTLINSIFPPLIENIDTVMQSLPNFQTIIT---EWINNLTPYIKAVSITNEQIQEFTL 165

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                   L TN ++      +    + ++   +II     L         I +    + 
Sbjct: 166 FLTNLLKGLLTNALNIGTGVVTNLTGLVINTLATIILTFYFLKDKETIFAGIDKLGTVIF 225

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +    A  K     + +V  +  +G  I A   G+       + G P  + +G+I  +  
Sbjct: 226 KPQIKAKIKHFLHDLHEVFGNFIVGQLIDAAIVGVASSLLLLIIGHPFALLIGLIAGVTN 285

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   PI   A+++ L +  ++      F+       I    ++P ++G  + L  +  
Sbjct: 286 IIPYVGPIIGAALALILGLFTSVKLGILGFILLIAYQQIDGYFIQPKILGDSVGLAPVWI 345

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F  ++ G   +G  G+ +   + AL  V        ++
Sbjct: 346 FIVILIGGNYLGAPGMILSVPIAALCKVYIDRRFQKLE 383


>gi|237800255|ref|ZP_04588716.1| hypothetical protein POR16_15601 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331023112|gb|EGI03169.1| hypothetical protein POR16_15601 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 335

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 109/341 (31%), Gaps = 12/341 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++F+    +  L G  APVL+ L++ F    + S+   +          +   
Sbjct: 1   EAVVLAVLLFLAFTLVLTLGGMLAPVLAGLVLAFLMHGLVSALE-RLRMPEMAAVGLVFT 59

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +V LL L      +M  L ++          V   L +    + + E     + 
Sbjct: 60  LFIGVLLVFLLVLVPLLWHQMITLFNEAPGMLAKWQSVLLLLPERYPHLVSDEQVLLAIE 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +                    F+     + ++  + ++ + I +FFF +D   I +  
Sbjct: 120 VARGE--------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHMIGRWA 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    A   +++  + + I +   G  I     G V   A+   G+     L ++ 
Sbjct: 172 RGYLPRE-RALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYAALLAMLV 230

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            I  ++P    +  T       L   G       L +   I   +    L P L    + 
Sbjct: 231 GISVVVPYVGAVVVTVPVALIGLFQWGWGDQFIYLMIAHGIIQALDGNVLVPLLFSEAVN 290

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L  +     ++      G  G+F    L  L   +      
Sbjct: 291 LHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 331


>gi|256618945|ref|ZP_05475791.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
 gi|256598472|gb|EEU17648.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200]
          Length = 350

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 117/360 (32%), Gaps = 17/360 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  +  + + R+ ++ +I+  LY  +     +L   I  + +  +        +  + 
Sbjct: 3   LYQKFIQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIPTI 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++    V+ L  + +       + +  ++++ VV   Q                  +
Sbjct: 63  VIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQS---------------PHT 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +         Q L+  +      NG   I R+    G + L + +S I     +    + 
Sbjct: 108 DTNQVLQFIDQYLEKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFMIEKKKM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  L S  +  F   +   +                IA+   ++   A  + G   
Sbjct: 168 ADFSKLFLKSDFDWFFQDIY-YFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQ 226

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             +L ++  I++++P    I     +S     +G + +   +     I        L P 
Sbjct: 227 LPSLAIMIFILSLVPVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPK 286

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +    +LP   TF  L+   R  G+ GL +G  +      + K   +   +    +  N
Sbjct: 287 FMSSKTELPIFYTFVILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 346


>gi|257060547|ref|YP_003138435.1| hypothetical protein Cyan8802_2742 [Cyanothece sp. PCC 8802]
 gi|256590713|gb|ACV01600.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 344

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 110/337 (32%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++++ I +  L+ ++       +A++I      + + F  K     ++  +++   ++
Sbjct: 7   LAFIVVAISVYILWQIRQLLLLFFTAVVIANGLNHLVNWFQRK-GIKRSYGVLLSMTFLL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     +      ++ EL+  V    +  I   R L+          L T       
Sbjct: 66  IAIVGFFWIVIPPFAEQLPELIQLVPQGIEELITTLRALAVKLDPELLRNLPT------- 118

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   +      ++ I           L   LS++ ++        +     Q    L
Sbjct: 119 ---LEEISQQFQPLVNQIAGRGLSVFYTTLAIPLSLVLLLALSLMLLANPQPYRQGFIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               + +    I       +    + + +  I    +      +  +P  +A  ++T I+
Sbjct: 176 FPSFYRSRINDILVNCDCCLHGWLISILLKMIIFASLSFIGLLILQIPLALAQAMLTGIL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A IP    I      I + +    + +  + +   I   I    L P ++   + LP   
Sbjct: 236 AFIPNIGLILSVIPPIAIALLETPWKSIVIIIIYLIIQQIDIHFLSPLIMKEKVILPPAI 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +      G+LG  +   L  +  V  KE ++ 
Sbjct: 296 TLLAQLFFAMIFGVLGFLLAFPLAVVGKVWVKEVLIK 332


>gi|326202288|ref|ZP_08192157.1| sporulation integral membrane protein YtvI [Clostridium
           papyrosolvens DSM 2782]
 gi|325987406|gb|EGD48233.1| sporulation integral membrane protein YtvI [Clostridium
           papyrosolvens DSM 2782]
          Length = 353

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 114/325 (35%), Gaps = 3/325 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             +I +S+ +L  FFAP + ALI+ + + P+      + + S    A ++ +  M L  +
Sbjct: 21  FAVIYLSMSYLLPFFAPFVIALIVSYINEPVIKLLQ-RLKISRKAAAAVSLLFTMSLLGL 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L         E+  L   +   +         L  I             ++   +  ++
Sbjct: 80  VLTVGILKMYNELIVLQDNLTKYSSDISVKINGL--IHKATLFYNGLPDQVTSTITKNLI 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           S +      I  + ++            + +I  I+  +F   D  SIS          +
Sbjct: 138 SFSEKIGLIITSVIQYVINTVSSIPRLTVFVIVTILGTYFISSDKKSISSFFYRQLPFSW 197

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 + +   K +   F  + I+     + +    ++  V     + ++  +   IP 
Sbjct: 198 RKNIVSLKKDTFKALLGYFKAILILMGFTFIEVSIGLFILNVDYAFLIALLVGLSDAIPI 257

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                     I   +               +   ++ + + P +VG  I L  L T F +
Sbjct: 258 MGTGVVMVPWILWTVISGDMPLALGLSIIYVLGILIRQIMEPKIVGSQIGLHPLVTLFAM 317

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
             G++  G++G+F+GP+ + ++  +
Sbjct: 318 YIGLKFFGIIGMFVGPISIIVVKKL 342


>gi|198283230|ref|YP_002219551.1| hypothetical protein Lferr_1102 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218666938|ref|YP_002425462.1| hypothetical protein AFE_0988 [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247751|gb|ACH83344.1| protein of unknown function UPF0118 [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519151|gb|ACK79737.1| membrane protein, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 346

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 134/341 (39%), Gaps = 12/341 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +  ++++ +   + Y L  F  P+L   ++    WP                +++  +  
Sbjct: 14  LGTFVLLLVYAGAAYTLSPFAGPLLMGAVLTTVGWPWQLRLERAFHMPRWLGSLVHALVW 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + I+P + +    + ++  L+S+        +  P  +     G W            
Sbjct: 74  VAIIIIPAVIIVDSVLPQLALLISRWQSGGPLVVVPPEVMKIPYVGHWLLSHLRGLNGAY 133

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S  + + + + T+ +  +  F        L                   G  +++ L  
Sbjct: 134 LSALVSTHSGIITDSLSQLWIFTLHTFFAALTVFA-----------LALHGERLTEALRL 182

Query: 191 LGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
               ++      ++        RS  +G+  + + EG+ +G AY +AG+       V TA
Sbjct: 183 GAGQIWGSDRGDRLLAASRDAARSVLIGLIGVGVVEGMFIGIAYAVAGLGMWPLWLVATA 242

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++ IP GA     A +++L   G+ F    + +WG I +   D  +RP L G   + PF
Sbjct: 243 LISPIPFGATAVVGAATLWLAFTGHWFAGLLVLIWGLIVITAADLVVRPLLTGSQTQAPF 302

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              FF ++GG    GL+GL IGP+L+ L   +W+     ++
Sbjct: 303 FLVFFSILGGAEAFGLIGLIIGPILVLLARGVWRAWERRVR 343


>gi|188989483|ref|YP_001901493.1| hypothetical protein xccb100_0087 [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731243|emb|CAP49417.1| conserved hypothetical membrane protein [Xanthomonas campestris pv.
           campestris]
          Length = 346

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 102/339 (30%), Gaps = 19/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + +      L+ L G    V  A+++      + S        S      +  V 
Sbjct: 12  RVVIVLALVAYAWLLWALSGLLLMVFGAVVVAVLLRALASWVTRYTPLSDGTALGLVVVV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V   F   L         E+  L   +  A         W++  P G    EL  +  + 
Sbjct: 72  VAVGFTALLWLFGSQLATELGALQRTLPQAWA---RFHDWVAAGPLGPALEELTRQAPAR 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                           +  +   A  F +       ++  ++    +         + + 
Sbjct: 129 ----------------VSNLAPRAGAFALSITGGVANLFLVLAGAVYLAAQPQLYRRGVL 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A      R     +R    G  +  +  G + G   W  G+P  +ALG+I  
Sbjct: 173 LLFPVQVRATMDDAVRASGTALRLWLRGQLLAMVVVGALTGLGLWALGIPGALALGIIAG 232

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  +P   PI     +I L    +   A        +   I    L P +    + LP 
Sbjct: 233 LLDFVPIVGPILAAIPAILLGFTVSPQMALATAALFVVVQQIEGNILLPLIQQRTVDLPP 292

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +   F L G    +G  G+ +   L  +  V+ K   + 
Sbjct: 293 VLLLFSLFGIGTLLGPAGVLLAAPLTVVAFVLVKRLYVQ 331


>gi|260582568|ref|ZP_05850358.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           NT127]
 gi|260094379|gb|EEW78277.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           NT127]
          Length = 348

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 113/344 (32%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLYRTLLGIASVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L      + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLLRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S          ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAVKEERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGIGFGVAIGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|317507941|ref|ZP_07965636.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974]
 gi|316253752|gb|EFV13127.1| transmembrane protein [Segniliparus rugosus ATCC BAA-974]
          Length = 382

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 95/326 (29%), Gaps = 14/326 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              L+    P+  AL++     P+     +++    +    +  +  + L +    F+  
Sbjct: 50  FILLEVVVVPIALALLLAALMSPLVGWLAARRV-PRSLAVGLVLILGLGLLVGLFTFIVQ 108

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +     L  +V  + +               +WA        +        +      
Sbjct: 109 QAINGWPTLQGQVFQSFEQLR------------IWAERAGLHFSAEKLESLRNTTVNFAE 156

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                I           ++        +  L FF  DG  I   L  L         +  
Sbjct: 157 QHRADIAGGVFSTASALVEGVTGFFLTLFTLIFFLSDGQEIWYYLTKLVPEPARDRVRAA 216

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-F 262
                + +     G  ++A  + + +G       VP  + L  +  + A IP    +   
Sbjct: 217 GGAGYRTLTGYVKGTALVAAADAIGIGIGLAALRVPLALPLASLVFLGAFIPVVGSLVAG 276

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +  L+      A          + +    L+P ++G  +K+  L     +  GV  
Sbjct: 277 LVAVLVALVTQGPVVALLTIALLVGVMQLESHVLQPLVLGRAVKVHPLAVILAIATGVVL 336

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMA 348
            G++G  +   L+A++       +  
Sbjct: 337 AGIVGALLAVPLVAVLNTFIGRLVRG 362


>gi|15606132|ref|NP_213509.1| hypothetical protein aq_740 [Aquifex aeolicus VF5]
 gi|8928496|sp|O66948|Y740_AQUAE RecName: Full=UPF0118 membrane protein aq_740
 gi|2983326|gb|AAC06916.1| hypothetical protein aq_740 [Aquifex aeolicus VF5]
          Length = 353

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/321 (20%), Positives = 130/321 (40%), Gaps = 6/321 (1%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
           P++ A++ G   +P+Y     K + S    A +    V+   ++P          ++   
Sbjct: 30  PIVWAIVFGIVLYPLYGFIKRKLK-SENLAAFLVIFIVLVAIVIPFTIFAVITAQQIIVF 88

Query: 93  VSKVVLANQ--HGIPVPRWLSDIPGGMWASELWTKHLSHPQSL-KILSETFLKTNGIDFI 149
             KVV   Q      +   L +IP      E     L++ QS     +      + + F+
Sbjct: 89  SIKVVNFVQTHSVNDLINSLKEIPFLKEKRESLEPLLNYLQSEEFRRALINALNSILTFV 148

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                 +          +   ++ LFF  RDG  + +++ +          ++I + + +
Sbjct: 149 GDRLRSYVYTAGTSLFHVFVFLLTLFFILRDGEKVLKEIINSIPMK-REDLEEILKTIYR 207

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIY 268
            + +   G    A+ + ++    Y LAGV   +   +IT   A +P  GA   +  + IY
Sbjct: 208 TVLAVIYGTVGTAVAQSIMGFIGYSLAGVEFALIWALITFFAAFVPPFGAAFVWVPMDIY 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L     I     L  +G   +  +D  +RP ++   IKLP++  FF  +GG+   G +G+
Sbjct: 268 LFTTKGIKEGLILLFFGTFLISTMDNIVRPLVMKQGIKLPYVALFFSTIGGLIKFGFIGV 327

Query: 329 FIGPVLMALIAVIWKESIMAI 349
           F+GP++++ +    K     +
Sbjct: 328 FLGPIILSTMLASVKIYRRRV 348


>gi|325663709|ref|ZP_08152113.1| hypothetical protein HMPREF0490_02854 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470202|gb|EGC73435.1| hypothetical protein HMPREF0490_02854 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 357

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/330 (10%), Positives = 103/330 (31%), Gaps = 4/330 (1%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            + + ++     P   A ++ +   P+  +  +  + +   +A    + ++ +    L F
Sbjct: 29  YIGIKYILPLVLPFFCAFLVAYLLRPLVRNIHAHTKLNQGAVAGGLLLIILGVAGTALWF 88

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L    + +    +                       ++  E   +  S   +        
Sbjct: 89  LGSALVQQFCYFIEHYGFYAGKMERFLDQCCRSMSRVFGMEAG-ELESLFVTRMATIAEN 147

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++   +  +   +  +    ++     I + +++     D   + ++      +     +
Sbjct: 148 IERQFVPKLMANSWGYVRTIIEVAGVGIIIFVSIILLVNDFDKLKEKASHSIGYRH---F 204

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            KI + +  +         II      +    +     P  + LGV+   +  +P     
Sbjct: 205 VKILKRIFHMGGMFLKAQLIIMSVIAALCTVTFLFLKNPYALLLGVLIGFLDALPVLGTA 264

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                   +      F    +++  ++   +  + L P L+G  + +P +     +  G+
Sbjct: 265 VVLYPLAIVQAFQGRFLFAAVYVGLSVICNLTREFLEPKLIGEHLGIPAIMVLVTVYMGI 324

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           R  G+ G+  GP        I +E +   +
Sbjct: 325 RLFGVSGVITGPFGYLAGKEIVRELLQKGE 354


>gi|29375932|ref|NP_815086.1| hypothetical protein EF1365 [Enterococcus faecalis V583]
 gi|227518629|ref|ZP_03948678.1| permease [Enterococcus faecalis TX0104]
 gi|227553160|ref|ZP_03983209.1| permease [Enterococcus faecalis HH22]
 gi|255972922|ref|ZP_05423508.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255975976|ref|ZP_05426562.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256762372|ref|ZP_05502952.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256853002|ref|ZP_05558372.1| permease [Enterococcus faecalis T8]
 gi|256958855|ref|ZP_05563026.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256962051|ref|ZP_05566222.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256965249|ref|ZP_05569420.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|257078887|ref|ZP_05573248.1| permease [Enterococcus faecalis JH1]
 gi|257082666|ref|ZP_05577027.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|257085375|ref|ZP_05579736.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|257086870|ref|ZP_05581231.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|257089759|ref|ZP_05584120.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257415975|ref|ZP_05592969.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG]
 gi|257419177|ref|ZP_05596171.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257422745|ref|ZP_05599735.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294779557|ref|ZP_06744951.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|300860372|ref|ZP_07106459.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|29343394|gb|AAO81156.1| conserved hypothetical protein [Enterococcus faecalis V583]
 gi|227073924|gb|EEI11887.1| permease [Enterococcus faecalis TX0104]
 gi|227177686|gb|EEI58658.1| permease [Enterococcus faecalis HH22]
 gi|255963940|gb|EET96416.1| conserved hypothetical protein [Enterococcus faecalis T1]
 gi|255968848|gb|EET99470.1| conserved hypothetical protein [Enterococcus faecalis T2]
 gi|256683623|gb|EEU23318.1| conserved hypothetical protein [Enterococcus faecalis T3]
 gi|256711461|gb|EEU26499.1| permease [Enterococcus faecalis T8]
 gi|256949351|gb|EEU65983.1| conserved hypothetical protein [Enterococcus faecalis DS5]
 gi|256952547|gb|EEU69179.1| conserved hypothetical protein [Enterococcus faecalis Merz96]
 gi|256955745|gb|EEU72377.1| conserved hypothetical protein [Enterococcus faecalis HIP11704]
 gi|256986917|gb|EEU74219.1| permease [Enterococcus faecalis JH1]
 gi|256990696|gb|EEU77998.1| conserved hypothetical protein [Enterococcus faecalis E1Sol]
 gi|256993405|gb|EEU80707.1| conserved hypothetical protein [Enterococcus faecalis Fly1]
 gi|256994900|gb|EEU82202.1| conserved hypothetical protein [Enterococcus faecalis D6]
 gi|256998571|gb|EEU85091.1| conserved hypothetical protein [Enterococcus faecalis CH188]
 gi|257157803|gb|EEU87763.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG]
 gi|257161005|gb|EEU90965.1| conserved hypothetical protein [Enterococcus faecalis T11]
 gi|257164569|gb|EEU94529.1| conserved hypothetical protein [Enterococcus faecalis X98]
 gi|294453347|gb|EFG21755.1| putative membrane protein [Enterococcus faecalis PC1.1]
 gi|295112886|emb|CBL31523.1| Predicted permease [Enterococcus sp. 7L76]
 gi|300849411|gb|EFK77161.1| conserved hypothetical protein [Enterococcus faecalis TUSoD Ef11]
 gi|323480600|gb|ADX80039.1| conserved hypothetical protein [Enterococcus faecalis 62]
 gi|327535006|gb|AEA93840.1| membrane protein [Enterococcus faecalis OG1RF]
          Length = 350

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/360 (13%), Positives = 117/360 (32%), Gaps = 17/360 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  +  + + R+ ++ +I+  LY  +     +L   I  + +  +        +  + 
Sbjct: 3   LYQKFIQNERLRRFCVLALIIFVLYLSRSMITTILLTFIFTYLAVRLVHFVQRYMKIPTI 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + ++    V+ L  + +       + +  ++++ VV   Q                  +
Sbjct: 63  VIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQS---------------PHT 107

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +         Q L+  +      NG   I R+    G + L + +S I     +    + 
Sbjct: 108 DTNQVLQFIDQYLEKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFMIEKKQM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  L S  +  F   +   +                IA+   ++   A  + G   
Sbjct: 168 ADFSKLFLKSDFDWFFQDIY-YFANKFVNTFGVVMEAQFFIAVVNTVITTLALAIIGFTQ 226

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             +L ++  I++++P    I     +S     +G + +   +     I        L P 
Sbjct: 227 LPSLAIMIFILSLVPVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFESYVLNPK 286

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +    +LP   TF  L+   R  G+ GL +G  +      + K   +   +    +  N
Sbjct: 287 FMSSKTELPIFYTFVILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 346


>gi|148284186|ref|YP_001248276.1| putative permease protein [Orientia tsutsugamushi str. Boryong]
 gi|146739625|emb|CAM79414.1| putative permease protein [Orientia tsutsugamushi str. Boryong]
          Length = 348

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/332 (18%), Positives = 113/332 (34%), Gaps = 11/332 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                I+ ++I  IIL   YFL     P L+A ++ +   PI      K + S   +  I
Sbjct: 4   KTNNYILYFIITAIILSLCYFLINIATPFLAAAVLAYILNPIVEILQIKLKLSRNLIVSI 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V  + + IV  L L      +   LV+ +              + I        +   
Sbjct: 64  VFVVFLTILIVAALLLMPIIYKQAALLVANIPAYRATIQSFIESNNSINNLDLNHNIKHI 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 S  +          I  I   A ++ +  +   ++  F  I LF+F RD   I 
Sbjct: 124 LTEIINSWIL---------IITHILNHAWQYTITTIHSVVTAAFTGILLFYFLRDWKLII 174

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               S+      +Y  KI   +   + +   G     +   +    +  L  +   + +G
Sbjct: 175 NSCKSILPQQSLSYINKIVNSINTSLLAYAQGQLNTCLILSIFYSISLLLINLDFSLTIG 234

Query: 246 VITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + +  + +IP    I  +  A+       G  F    + +   I   +    L P L+G 
Sbjct: 235 LFSGTIIIIPLIGTIISTSIALITCFSQFGLSFKLLYVIMIYIISHILESHFLTPKLIGS 294

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            + L  +  +F ++     +G  G+F+   L 
Sbjct: 295 KVGLHPIWIYFSVLTCSYYLGFTGIFLAIPLA 326


>gi|298250756|ref|ZP_06974560.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297548760|gb|EFH82627.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 372

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/355 (12%), Positives = 111/355 (31%), Gaps = 12/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +   ++   +   +I+ I+   +  + G    +  A +I +   P+              
Sbjct: 19  KRFFVSVTLLTWLVIVGILARFIGLIAGPIILLTLAGLIAYIIHPLVKILER--VLPRPL 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  ++++ L +  L F+    + ++  LV+ +    QH     +             
Sbjct: 77  AIAVVFLALLLLLVSLLYFVILAAIQQLASLVTSLQTFVQHPTFQKQLQPIFHFLTQIGS 136

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +S  Q +    +  +              F        +++I +     +F  DG
Sbjct: 137 SPQQLVSALQQVAGYLQGAVFNILP---------FISNLFAIIINVIILTSFCLYFLIDG 187

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                         F A        + +       G  I+A+   L+        GVP  
Sbjct: 188 SRAVHWFRQNTPQRFKAKINFFINTLERSFGGYVRGQIILAVIITLITAVGASFIGVPFI 247

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFL 300
           + L +I  +   +P         + +   +      A  + ++  I    +  + L P +
Sbjct: 248 ILLAIIVFVFEFVPIIGAYISGTIGVLFALANGWHTALIMAIFVTIINGVLEGQILAPRI 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  I L  + + F L+ G    G++G  +   +  L   + +      +    +
Sbjct: 308 LGHAIGLHPIISIFALLIGSSLFGIIGAVLAAPIAGLCQALIQACWSNWRTTHPE 362


>gi|70728833|ref|YP_258582.1| PerM family membrane protein [Pseudomonas fluorescens Pf-5]
 gi|68343132|gb|AAY90738.1| membrane protein, PerM family [Pseudomonas fluorescens Pf-5]
          Length = 356

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 118/349 (33%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ +    +  S   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVVSLE-RLRLPGGA 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M L +V +L +      ++  L +++         +   L +    + + E
Sbjct: 69  AVGLVFALFMGLLLVFILVVVPLLWHQLITLFNELPGMLAKWQSLLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLQAIEVARGEI--------GKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--WLAGVP 239
             IS+ + S           +++  + + I +   G  I  +  G V   A+        
Sbjct: 181 AMISRWVISYLPRE-RTLITRVAHEMNRQIANYIRGKVIEIVICGGVTYIAFVALGLNYA 239

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           + +AL V  +++    G   ++     I L   G       L     I   +    L P 
Sbjct: 240 ALLALLVGVSVVVPYVGAVVVTVPVALIALFQWGWSDQFIYLMAVYGIIQTLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L  G + L  +     ++      G  G+F    L  L   +       
Sbjct: 300 LFSGAVNLHPVAIICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPRK 348


>gi|89071208|ref|ZP_01158394.1| Conserved hypothetical membrane/transport protein [Oceanicola
           granulosus HTCC2516]
 gi|89043250|gb|EAR49478.1| Conserved hypothetical membrane/transport protein [Oceanicola
           granulosus HTCC2516]
          Length = 376

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 107/329 (32%), Gaps = 11/329 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +  +  +++F +    P++  L+I  T  P+                V++ V ++   
Sbjct: 27  LFILALFSAVFFARALLLPIVLGLLIALTLRPVARGLSRIGVP-----TVVSAVFLVVAL 81

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
                   Y     +  LV +            R L      +  +    + L+     +
Sbjct: 82  GAGATGAIYAASGPVGRLVERAPEIGNELEVKMRGLLQSVDEVQKASEQVEQLASGGDEE 141

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  +   G   I               ++++  +  L         I +    L   
Sbjct: 142 GEPQQVVVEQGA-LIGDLVGSMASAGTSLAVALVLAMFFLATGDMFQRRIIENAQRL--- 197

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                   I R V + I      +T+I  G G+ +G A WL G+P+    G+   ++  +
Sbjct: 198 SDKKRAMMIVRDVERQISRYLAAITVINAGLGVCIGVALWLIGLPNAHFWGIAAFLLNFL 257

Query: 255 PGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P    +        + ++    +  A    +       +    + P L+G  + +  +  
Sbjct: 258 PFIGAMVGTAGVAIMAIVTFDTMGQALLCPIAYLALTALEGNVVTPTLLGRHLAINTVSV 317

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           F  ++  V   G+ G F+   ++ ++ V+
Sbjct: 318 FLTVMLWVWLWGIPGAFLAVPVLVIVKVL 346


>gi|160881956|ref|YP_001560924.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
 gi|160430622|gb|ABX44185.1| sporulation integral membrane protein YtvI [Clostridium
           phytofermentans ISDg]
          Length = 344

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/348 (12%), Positives = 119/348 (34%), Gaps = 4/348 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+ +    + ++    +  + + + +L   F P L A  I +   P+      K +    
Sbjct: 1   MKLSKNKRKLLLTAGTIIAVYIGMKYLLPLFVPFLFAYFIAWLLRPVVGFLHRKLKIPLV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                  + ++ +  V L +L      ++   +  + +  Q+       +      ++  
Sbjct: 61  VGGGFGVLLLLLVISVILCYLGRILFNQVVLFLRNIPIYQQYFTQQVEIICVTGDKLFGF 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +  +  L     +      +++ N +  +     +  +   ++    + +++A     +D
Sbjct: 121 KDGSLKLVVNDGM-ETLVKYVQMNILPKMTVQTIKLAIGLAEFLAIFLIILVATILIIKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  L       F     KI++ +     +      I+     ++    +++   P 
Sbjct: 180 MEEYKVGLRK---SEFYPAVHKITQKLSDTGIAYMKTQMILMSIIAVINAVGFFILKNPY 236

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + +G+   I    P             +++    F    + +   +   IV + L P L
Sbjct: 237 ALLIGLAVGIFDGFPVLGSGLILIPWTIVMLLQKKFMHAAVIMSIFLLCQIVREILEPKL 296

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +G  I +  + +   +  GV+  G++G F+GP+ + +I  +       
Sbjct: 297 LGDKIGVKPIYSMIAMYVGVQLFGVIGFFLGPLSLVIIKTVIATYAEE 344


>gi|223940687|ref|ZP_03632527.1| protein of unknown function UPF0118 [bacterium Ellin514]
 gi|223890657|gb|EEF57178.1| protein of unknown function UPF0118 [bacterium Ellin514]
          Length = 360

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/349 (11%), Positives = 119/349 (34%), Gaps = 18/349 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ++  + I++     ++      L  F A +  +L++     P++    ++     +   +
Sbjct: 13  IIPWRTILKIAAACLLAYITVRLSRFLALLALSLLLAIAFRPLFRW-TARHHWPKSAGIL 71

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                + C   +    L      +  E + K+    +  +  P                 
Sbjct: 72  ACGSILFCSTALVFGLLVPAISKQGTEFIQKLPEFKERILQSP----------------- 114

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 ++L     +    + ++ + + A  +G + L+       ++I   +   +G  +
Sbjct: 115 PASGVVRNLADRFFSASAYSNLEPLLKKAVTWGGVGLERMAEFFLVLILSLYLIAEGDRV 174

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L +             +  + +V+    +G  I ++  G+   +   L  VP+   L
Sbjct: 175 YRWLIAFLPEEQRRKTAAAAEEITEVVSQYVVGNIITSVICGIYAFTVLKLLHVPNAALL 234

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            V+  I  ++P      FT  ++ L +  ++  A  + +  +      +  + P + G  
Sbjct: 235 AVMAGIFDLLPIIGFFLFTIPAVLLALTVSVKAAMLVAILYSAYHLAENYFIVPKVYGNR 294

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           ++L  L      +      G++G+ +   ++A    I +  +    +  
Sbjct: 295 LRLSELTVLISCLAAGLIAGVIGVLLVLPIIASYPTIERIWLRPYLQRD 343


>gi|192293063|ref|YP_001993668.1| hypothetical protein Rpal_4702 [Rhodopseudomonas palustris TIE-1]
 gi|192286812|gb|ACF03193.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 371

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/323 (16%), Positives = 108/323 (33%), Gaps = 19/323 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K FF P+++A ++G    P  S     +   +    +I T+ +  +  +  L        
Sbjct: 57  KPFFLPMVTAFVVGTMVSPAASFLERFRIPRAVSAVLIVTLGLGTVIFMIGLISAPLI-- 114

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
              E  S++             L          ++W +  S     + L +  ++   ID
Sbjct: 115 ---EWSSRIPEIGSLLRDKLHVLDR------PLQMWRQIQSSLSGSESLPQPSVQMPKID 165

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++  F S      L + + ++  +                + +           +I   +
Sbjct: 166 WVFEFLSPTLTEVLLFLVMLVLFVAGW------KDLRRSLVMNFAGREARLRTLRILNEI 219

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              + +  L +T+I +  G   G     AG+P+   LG + A++  IP   P     +  
Sbjct: 220 EGSLGAYLLTVTVINLCYGAATGLLCAAAGMPNPAGLGALAAVLNFIPIIGPFVMFVIMT 279

Query: 268 YLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + I         L   L   +  F     + P ++G  + L  L  F  L       G 
Sbjct: 280 VVGIISMPTLGAGLLAPLGFVLLTFFEGHFITPTIIGRRLSLNTLAVFITLAFWTWLWGP 339

Query: 326 LGLFIGPVLMALIAVIWKESIMA 348
           +G F+   L+ +  V+ +  +  
Sbjct: 340 MGSFLASPLLIVGLVLKEHLMPE 362


>gi|21228773|ref|NP_634695.1| hypothetical protein MM_2671 [Methanosarcina mazei Go1]
 gi|20907289|gb|AAM32367.1| hypothetical protein MM_2671 [Methanosarcina mazei Go1]
          Length = 401

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 125/337 (37%), Gaps = 10/337 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   +++ + L +LY    FF  ++ + +  +   P+YS  + K  ++    A+I   
Sbjct: 8   KAIYAVVLIMVSLFALYITSSFFYVIILSALFAYVIHPVYSFCL-KFVKNRQICALIPLG 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V  L       +    M E   ++      N       R +  +   +  +       S
Sbjct: 67  TVFILIASSGFMMIKALMNETSRILEIPNTLNGFANMDLRRIVGLFEPIIKTHPGKLTES 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L  L   ++       I     +         + +I +++  ++   +  +I+ +L
Sbjct: 127 IGGYLNTLVMDYVPQ-----IQNNIVQISTDLSILIIELIVIVVLTYYLLVESETIAAEL 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             R +  + ++ F+   +  +  G++ G  YW+ GVP  +  G++T
Sbjct: 182 PGLFPD--RKVGVVFLRELNHIYQNLFVVYFLTCLATGVIGGILYWVLGVPYPLIWGIVT 239

Query: 249 AIMAMIPGGAP--ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            IMA++P      +       Y+LI+        +FL       I D  +RP L      
Sbjct: 240 FIMALLPVVGAGTVYGLLALYYVLIQNYFTAGALVFLGIVFLNIIPDFVIRPKLARSRAA 299

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +    T       V  +G +G+ IGP+    +  +++
Sbjct: 300 IHPAITLLAFAAPVFVLGPVGIIIGPLTYGFLLAVFR 336


>gi|15639542|ref|NP_218992.1| hypothetical protein TP0553 [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025781|ref|YP_001933553.1| hypothetical protein TPASS_0553 [Treponema pallidum subsp. pallidum
           SS14]
 gi|8928462|sp|O83564|Y553_TREPA RecName: Full=UPF0118 membrane protein TP_0553
 gi|3322847|gb|AAC26557.1| conserved hypothetical integral membrane protein [Treponema
           pallidum subsp. pallidum str. Nichols]
 gi|189018356|gb|ACD70974.1| hypothetical integral membrane protein [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059930|gb|ADD72665.1| membrane protein [Treponema pallidum subsp. pallidum str. Chicago]
 gi|311359268|gb|ADP94169.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue]
 gi|311705159|gb|ADQ01048.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue]
 gi|311705167|gb|ADQ01055.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pertenue str. Gauthier]
 gi|313505080|gb|ADR64248.1| conserved hypothetical membrane protein [Treponema pallidum]
 gi|313505088|gb|ADR64255.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pallidum str. Mexico A]
 gi|313505096|gb|ADR64262.1| conserved hypothetical membrane protein [Treponema pallidum subsp.
           pallidum]
          Length = 403

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 60/372 (16%), Positives = 122/372 (32%), Gaps = 32/372 (8%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----- 55
           M +        +  ++  + ++       +   +L + I+     P Y +  ++      
Sbjct: 1   MEKQSPAQTISLFVLLALMFVLVCMLFVPYLTVLLWSSILAILLSPCYRALCARIDMHAF 60

Query: 56  ------------------------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
                                         LA + ++ +  L      F+      + K 
Sbjct: 61  TRTRHLVSHMNGEDGCTAAITRATRFQKKMLAAVFSLVITLLVTTVFFFIAISLFGQGKL 120

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  K+ L  +    +              +L    +                  ++ +  
Sbjct: 121 LFDKLSLFFREY-DLFEGAKQRSFTALIFKLSRGTVDISTLNVEEHLLRFFGKHVESVFV 179

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           +   F        LS +F    L+FF+ DG  +S  L +       A   ++     +  
Sbjct: 180 YTQIFVKNIARAALSTLFFSFTLYFFFLDGEHLSCLLIAALPLRKRAS-AQLLEKCKEAT 238

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLL 270
           R  F G+  IA  +  V    Y +  V   +AL ++T   + +P       +  V I + 
Sbjct: 239 RHLFKGLFSIAFYQTCVAFVFYGIFRVEGPMALAMLTFFASFLPLVGCACVWLPVGISIG 298

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                   T         + I+D  LRP L+   +++  L  FF ++GGV+T G  G+ +
Sbjct: 299 FTSGWMRGTLFLFVAGSSITIIDSFLRPLLLQNKMRIHPLLIFFSMLGGVQTFGFNGMVL 358

Query: 331 GPVLMALIAVIW 342
           GP+L+ L+  + 
Sbjct: 359 GPILVILLFTVI 370


>gi|299144220|ref|ZP_07037300.1| putative membrane protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298518705|gb|EFI42444.1| putative membrane protein [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 408

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/366 (14%), Positives = 124/366 (33%), Gaps = 12/366 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFL-------KGFFAPVLSALIIGFTSWPIYSSFISK 54
           +   ++ +  +R +   ++L SL  +             +++A+I+ F   P+ + F +K
Sbjct: 43  KRINIDLKLAIRILFGVVVLYSLKLIFNKYPIVSDTIWALIAAIIVSFLINPVVTYFETK 102

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH----GIPVPRWL 110
            + S  +  +I  VSV+ +  + L+ +    + E+  L+  +             +   L
Sbjct: 103 -KISRKYGVIIVYVSVILVLAILLIIVIPKTIQEITNLLKSIPSLIDQSGKILNDLSEKL 161

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           +             + +       I     L    I    +  +          L  + +
Sbjct: 162 NKSFNYDLPKNEQGRTIIEEIQNSINKYIVLVPEAILSKLKNLTMGMQTVFSKLLRFVLI 221

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            I  F+F  D       LDS            I+  +   +     G  ++A+  G    
Sbjct: 222 FIFSFYFTVDKNKFKNILDSHIPVKHRNDILYIASRINSALHDFVKGRLLMAVFVGFATM 281

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               + GV   V +G+IT I  +IP   P      ++      +   A  + +   +  +
Sbjct: 282 VYLLILGVDFAVVIGIITCIADIIPYIGPFLGFVPAVLFAFIESPIKALWVAILFLLLQW 341

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +  + P L+     L  +     ++ G    G+ G+     ++++  ++   + M   
Sbjct: 342 AENNIIAPKLLADKTGLNPMVILIAIIIGGGVFGIWGMIFAVPIVSVALILIDFAKMKYN 401

Query: 351 ENKEKI 356
           E    I
Sbjct: 402 ERNRNI 407


>gi|256419838|ref|YP_003120491.1| hypothetical protein Cpin_0792 [Chitinophaga pinensis DSM 2588]
 gi|256034746|gb|ACU58290.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 344

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 120/352 (34%), Gaps = 20/352 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              Q     +I+ +  V    L  FF   L A+ +   S       + K+    +  A +
Sbjct: 8   RIKQVSFLLIILLLAYVLFKELYTFFPGFLGAVTMYILSRKFMFRLVEKRNWKKSAAAAL 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V    + ++P   L      ++   VS           +   + +       S++  +
Sbjct: 68  LMVLSFIIVLLPFGMLINMLTDKIGYAVSHSQEMVAGIEKLNVRIKESTNFDVLSQVKLE 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L                    ++            +   +I  +   L+F   +   + 
Sbjct: 128 RLQ------------------GYLTSVLPTLLGATFNTLTAIAILYFILYFMLVNAREME 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L      L      ++     K++ +  +G+  IA+ +G+V    Y++  VP  V   
Sbjct: 170 AWLYEYIP-LKDENVLRLGTEFHKLVIANAVGIPAIALIQGVVSLIGYFIFQVPQPVFWF 228

Query: 246 VITAIMAMIPGGAPISFTAVS-IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +T   AM+P     +      +YLL  G  +    + ++G   +   D   R  L    
Sbjct: 229 AVTCFTAMLPVVGAAAVYVPMGLYLLGTGMTWQGIGVLVYGFAVVGTSDNIFRFVLAKRI 288

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             +  L T FG++ GV   G +GL  GP+L+++  ++ +         K ++
Sbjct: 289 GDVHPLITVFGVLIGVNLFGFIGLIFGPLLISMFILLLEIYSNEFFTKKREV 340


>gi|315657404|ref|ZP_07910286.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|315491876|gb|EFU81485.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 469

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 21/324 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+  L  + G F P   A  +     P     I  +       A++  V +  +  + L 
Sbjct: 64  IIFLLSLIAGVFMPTFLAFSLALAVRPASEWLIRHRW-PVGLAALVNIVLLFAILFIMLG 122

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + EL                 L                     ++    + 
Sbjct: 123 LIAIAITAMVTELPRYGAKFQALYEHAINQLDRRGF-------------DTSAVLDSWKN 169

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                   ++  FA++           I+  I  +      G ++  +  +     +   
Sbjct: 170 VDINRIFSYLSGFANQISGAGTTLFFIIMVAIFVV------GDTVVVRRRAAELASYAPG 223

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +    R     +R+ FL  T+      LV     +  GVP+    G++  +   IP    
Sbjct: 224 FAIALRNFSLRVRTYFLMTTVFGAVVALVDVGILYAFGVPTPWTWGILAFVANYIPAVGF 283

Query: 260 IS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I       +  L    ++ A  +F+   +   +    L+P + G  + L    +F  L+ 
Sbjct: 284 ILSMIPPILLALALDGVWPAVGVFIGYMVASLLFLNILQPRIAGNAVGLNATVSFLSLMV 343

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
               MG LG  +   L      I+
Sbjct: 344 WSTVMGPLGAILAVPLTLFFKAIF 367


>gi|297617177|ref|YP_003702336.1| sporulation integral membrane protein YtvI [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145014|gb|ADI01771.1| sporulation integral membrane protein YtvI [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 373

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/359 (14%), Positives = 113/359 (31%), Gaps = 15/359 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY---------------SSFIS 53
           + +++  ++F+ L+S+Y L  +  P++ A+++    + +                     
Sbjct: 10  RTLVKTAVVFLALLSVYLLFRYVLPLVGAILVAIPGYVLPFLVALLLALLIEPLARFLNY 69

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +      +   ++ + V       L +     + E+  L   +   +             
Sbjct: 70  RLRLRRGWAVFLSLLLVWGTAGFLLTYFVSRLIGELIGLYKVITEHSVSITNTIARALGQ 129

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               +       ++       +L         +         F +      +  +   +A
Sbjct: 130 AELFYLRLNLPDNVQESIRNSLLQYLSGLEKILSGSVDVLIDFLVGLPGLFVFFLISTVA 189

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF  RD   +      L    +    + + + +           +++    G+      
Sbjct: 190 TFFILRDWNKLRSGFFELLPDSWKITVRTVIKDLFNAFTGFLKAYSLLVTVTGIETIVGL 249

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L GV   + LG++T ++ ++P   P       I               L     L  V 
Sbjct: 250 KLLGVEYALTLGLVTGLLDILPVLGPGVLFVPWIIFSYITGASGFATGLLILYGILVAVR 309

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + L P LVG  I L  L T   L  G++ +G  GL +GPV++ L     +  +     N
Sbjct: 310 QVLEPKLVGDSIGLHPLATLVSLYIGLKLLGPAGLVLGPVMVILYLACQRAGVFHQLAN 368


>gi|148643102|ref|YP_001273615.1| permease [Methanobrevibacter smithii ATCC 35061]
 gi|148552119|gb|ABQ87247.1| predicted permease [Methanobrevibacter smithii ATCC 35061]
          Length = 348

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 132/353 (37%), Gaps = 7/353 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +         +++F++ +SL  +      V+   I+ +   P+     SK +  S 
Sbjct: 1   MEKDLKEYITPPVLLVLFLLGISLMIVSPVLNMVILGAILAYAIRPLARKITSKIKIRSV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + +   + ++ L I+    +     +    LV      N +   V   + +      +S
Sbjct: 61  SIFLAVILVMIPLVILIAYIISVISGVLSDVLVVNPSGFNLNLDTVINQMVNSLPADISS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +    S +    +  + +  +        L   + +  +  ++++F RD
Sbjct: 121 -------GIDTASIKSSLSGFIKDIGNVVLDYIVSLASKLLSISVDLFILFASIYYFIRD 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +    ++S        ++++    V +V++S F G  + ++  G++    Y L G   
Sbjct: 174 GDNCYDFVESFIPQESKDFFERTVNSVKEVLKSIFYGHFLTSLIIGIIATVGYSLLGYSQ 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T I  +IP   P         + +    +    + +     L + D  +RP L
Sbjct: 234 GVFLGVLTGIFQLIPIFGPWPIYWTLAIVDLISGNYVRVVIVILFGFFLSLSDMYIRPAL 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 +  L    G + G    G++G  +GP+++ +   +     + + ++K
Sbjct: 294 SSHYADIHPLILLIGFLAGPLVYGIVGFILGPLILGITYAVLDNFRIELNKSK 346


>gi|21672406|ref|NP_660473.1| putative inner membrane protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25091630|sp|Q8KA12|Y115_BUCAP RecName: Full=UPF0118 membrane protein BUsg_115
 gi|21623015|gb|AAM67684.1| hypothetical 39.8 kDa protein [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 364

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 67/337 (19%), Positives = 125/337 (37%), Gaps = 5/337 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +    I+ I   S   ++ F      A +I   +WP+                +   + 
Sbjct: 14  ILSLIFIIAISATSFLIIQPFILGFSWASMIVIATWPLMLKMQKFLGGKRLVAVIGMIII 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ LFI+P++FL    +     L+      N     +         G      + + L  
Sbjct: 74  LLLLFIIPIVFLVNSLIKTSIPLIHWFSSNNLEFPELIWLQDIPIIGKKIFISYQELLDS 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                I           +F    A   G+    + + +  M++     Y +G  IS  + 
Sbjct: 134 DGGELIREIRPYMGRTTEFFIIQAKNCGL----FIMHLTLMLLFSLLLYWNGEKISNSIR 189

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L     + I  +  + +R+  LG+ + A+ + ++ G    ++GVP    L ++  
Sbjct: 190 QFASRLSSRNGEAIVLLSVQAVRAVALGVVVTALIQAVLSGIGLLISGVPYWTLLMILIV 249

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              +I  G         I+L    N    T L +W     FI+D  LRPF +     LP 
Sbjct: 250 FSCLIQLGPLPILIPSVIWLYWNSNTTWGTLLLIWSCFV-FILDNILRPFFIRIGSDLPT 308

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
                G++GG+   G++GLFIGPV++ ++  +    I
Sbjct: 309 FLILLGVIGGLLAFGMIGLFIGPVVLVILYRLIVSWI 345


>gi|238749686|ref|ZP_04611191.1| AI-2 transport protein tqsA [Yersinia rohdei ATCC 43380]
 gi|238712341|gb|EEQ04554.1| AI-2 transport protein tqsA [Yersinia rohdei ATCC 43380]
          Length = 352

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/343 (11%), Positives = 104/343 (30%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      K +       V+   
Sbjct: 12  RLVAMLAMLVVIMAGIKAASPIVVPFLLAIFLAIILNPLVKLLE-KIKIPRALAIVLLVT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L  +    L        + L     +  +    +  +           ++      
Sbjct: 71  LIVLLMALLFSRLGSSLNEFARSLPQYRGMMLEKMRDLQEFAMRFNIDFSVDDIMKHVDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S   +++ + F   +   +  ++
Sbjct: 131 ------------------STAMNFITRILSQLSGAMASTFLLLMTVVFMLFEVERLPYKM 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  PA    I +     +    +  T+I+I  G+V+       G+      G++ 
Sbjct: 173 QLMFDN--PAQGNAILKRALNGVTHYLVIKTVISIATGIVIWLFLAAMGIRFAFLWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 231 FVLNYIPNIGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  +  + +    K
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIAKIALELTPAGYK 333


>gi|126656376|ref|ZP_01727637.1| hypothetical protein CY0110_21772 [Cyanothece sp. CCY0110]
 gi|126622062|gb|EAZ92769.1| hypothetical protein CY0110_21772 [Cyanothece sp. CCY0110]
          Length = 346

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 98/338 (28%), Gaps = 10/338 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + + I +  L+ ++       +A+ +      +    +    +       +A   +
Sbjct: 6   FVGVIALLIAIYILWQIRFIILLTFAAVALATAINYLVQLLMKLGIKKRGVAIFVALFLL 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +F V L  +F   + ++++ +  + L          WL +        E+        
Sbjct: 66  ALIFAVFLWLIFPPFIDQVQQSLYLLPLVVDKIGVWLMWLQETVPEQLVGEIQKLENLTR 125

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                             +           L   L+I+ + + +           +   +
Sbjct: 126 D----------LPGIATQLVGNFYSIFSGSLGVLLNILLVTVVMIMLLASPRPYIRLFLA 175

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                +     KI +     +     G+    +   L+      +  V   +A  ++  +
Sbjct: 176 FFPSFYRRRAAKILKKSEIALVGWTKGILFNMLVITLLSWLGLTILQVKLSLANALLAGL 235

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP   P       I L +    + A  + +   +        L P ++   + L   
Sbjct: 236 LTFIPNLGPALSCIPPIVLALIDAPWKALAVLILYILIQQAESNILTPLVMKQQVSLLPA 295

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            T           G +GLF+   L  +  V  +E ++ 
Sbjct: 296 VTLLAQASFAIFFGFIGLFLALPLAVVAQVWIEEVLIQ 333


>gi|219682054|ref|YP_002468438.1| hypothetical protein BUAPTUC7_122 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621787|gb|ACL29943.1| hypothetical protein BUAPTUC7_122 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085867|gb|ADP65949.1| putative inner membrane protein [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086437|gb|ADP66518.1| putative inner membrane protein [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 360

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 131/341 (38%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ LFI+P+ FL    +     ++  +   +     +    +    G      +  
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGSNDLELPELAWLQNIPLMGRKIFNSYQT 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+      I           +F        G+    + +  I M+      Y +G  IS
Sbjct: 130 LLNSDGGELIHKIRPYMGRATEFFIVQVRNCGL----FIIHSILMLFFSALLYWNGEKIS 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    L 
Sbjct: 186 ISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLM 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I     +I  G         I+L    +    T L +W     FI+D  LRPF +    
Sbjct: 246 IIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCFV-FILDHILRPFFIRIGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP L T  G++GG+ T G++GLFIGPV++ +   +    I
Sbjct: 305 DLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWI 345


>gi|21229557|ref|NP_635474.1| hypothetical protein XCC0079 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66766430|ref|YP_241192.1| hypothetical protein XC_0080 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21111025|gb|AAM39398.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571762|gb|AAY47172.1| conserved hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 346

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 54/339 (15%), Positives = 102/339 (30%), Gaps = 19/339 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + +      L+ L G    V  A+++      + S        S      +  V 
Sbjct: 12  RVVIVLALVAYAWLLWALSGLLLMVFGAVVVAVLLRALASWVTRYTPLSDGMALGLVVVV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V   F   L         E+  L   +  A         W++  P G    EL  +  + 
Sbjct: 72  VAVGFTALLWLFGSQLATELGALQRTLPQAWA---RFHDWVAAGPLGPALEELTRQAPAR 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                           +  +   A  F +       ++  ++    +         + + 
Sbjct: 129 ----------------VSNLAPRAGAFALSITGGVANLFLVLAGAVYLAAQPQLYRRGVL 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A      R     +R    G  +  +  G + G   W  G+P  +ALG+I  
Sbjct: 173 LLFPVQVRATMDDAVRASGTALRLWLRGQLLAMVVVGALTGLGLWALGIPGALALGIIAG 232

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  +P   PI     +I L    +   A        +   I    L P +    + LP 
Sbjct: 233 LLDFVPIVGPILAAIPAILLGFTVSPQMALATAALFVVVQQIEGNILLPLIQQRTVDLPP 292

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +   F L G    +G  G+ +   L  +  V+ K   + 
Sbjct: 293 VLLLFSLFGIGTLLGPAGVLLAAPLTVVAFVLVKRLYVQ 331


>gi|39935838|ref|NP_948114.1| hypothetical protein RPA2771 [Rhodopseudomonas palustris CGA009]
 gi|39649692|emb|CAE28213.1| possible transport protein/permease [Rhodopseudomonas palustris
           CGA009]
          Length = 388

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 91/344 (26%), Gaps = 3/344 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L + +   G    + + ++ G     +                 +  + + 
Sbjct: 29  IATVSFAALLYAAWQFAGTLFLIFAGVLFGVFLNALTELTGKLVGGPHGLRLALICLVLT 88

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L I            + K L   +     +   +        G +  +   +       
Sbjct: 89  GLTIGVAFLGGNTISQQAKALSGTIKTQIVNVKALLERNGVDTGFLELNPTPSAAHPETT 148

Query: 132 SLKILSETFLKT---NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +              +G   I     +  +  +    +   ++     F          L
Sbjct: 149 TPVQPRNLPSAGEIASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPSVYRNGL 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    + A    I     ++++   L   I  +    V  +   L G+P    LG+  
Sbjct: 209 VRMVPRRYRAQADVIVTDTGEMLKRWLLAQLITMMAVFAVTATGLSLIGIPGAFILGIQA 268

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A IP    I    + +   I          F+       +    L P +    I +P
Sbjct: 269 GLLAFIPTVGAILGGLIIVLAAIGSGWIAVVSAFVLFLGVHALESYILTPLIQRQAIDIP 328

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               F   +      GL GL +   LMA+  V+           
Sbjct: 329 PATLFAMQILLGIVFGLWGLALALPLMAIGRVVLDHLRGEEPAE 372


>gi|320187760|gb|EFW62435.1| Putative PerM family permease [Shigella flexneri CDC 796-83]
          Length = 349

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 110/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +    + ++  V 
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVTITIVVVVM 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++      L  L         E +S +   N+        L ++   +       + L  
Sbjct: 73  LIA-----LTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMIGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYACILVGALFLVVHMVIGNILEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 323


>gi|288574771|ref|ZP_06393128.1| protein of unknown function UPF0118 [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570512|gb|EFC92069.1| protein of unknown function UPF0118 [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 344

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 108/333 (32%), Gaps = 27/333 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +  + + L   +    P + A ++ +   PI      KK            V+V+
Sbjct: 11  VFILTLVAVGMVLKAAQSVILPFVIAWLLSYVFGPIVRFMARKKIP-----IFFTIVAVL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            LF+        +    +    S         I + +  +                    
Sbjct: 66  ALFLGVCALGAIFMNTRVVAFASAYPKYYDQLIALTKSFAS------------------- 106

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S  +  + +   N  + I ++        + +  +++ +I+ L F       +  ++   
Sbjct: 107 SDLLPPDFWDNINWGERIGKYLLSLSGSLVTFMSNLVLVIVFLVFMLLGSPYVEYKIKKA 166

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +    + + +   I S     T+I++  G+ +  A     V   +  GV+   +
Sbjct: 167 FSVDSGSRILSVLKAISTQIGSYLTLQTLISVSTGVCVWLALSYLRVDFAMTWGVLAFAL 226

Query: 252 AMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             IP    I  +   I L       N F A    +   +   ++   + P ++G  + + 
Sbjct: 227 NFIPTIGSIIASVPPILLALVQYYPNTFPAIGAAVSLLLIQMLIGNVITPKVMGDSLDVS 286

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +     L       G++G  +   ++A+I +I
Sbjct: 287 PVVILISLFFWGWLWGVIGALLSVPIVAIIKII 319


>gi|225010757|ref|ZP_03701226.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-3C]
 gi|225005128|gb|EEG43081.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-3C]
          Length = 362

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/363 (13%), Positives = 125/363 (34%), Gaps = 21/363 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEE 57
           M   +++   +    I+  IL  LYFL         ++ A I+     PI     +K   
Sbjct: 1   MNAKIISSGILRALAIVVAILAGLYFLNAITTVLVYIVIAAIVSLIGRPIALFLKNKLRF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           + T  A+     ++ +  + +  +    + + + L    +   +  I           G+
Sbjct: 61  NRTIAAISTMAILLGILSMLIALVVPLLVQQGENLSLLNIKGLKSSITDLYAEITAYFGL 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             + L+ +             + + T  ++ +P F +    +  ++   +  +    FFF
Sbjct: 121 ENNSLFAQFQDS---------SLITTLSLEQLPAFFNAVLGLLGNFGAGLFSVAFISFFF 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
            +D       +            K+    +  ++   FLG+    +   ++      +  
Sbjct: 172 LKDSELFENGILMWVPSKENLKTKEAFAKIKSLLSRYFLGLLFQILILFVIYSIVLSVFS 231

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT---------CLFLWGAIE 288
           VP+ + +  + A++ +IP   PI    + ++L +   +  +           + +   I 
Sbjct: 232 VPNAMVIAFLCALLNLIPYVGPIVGGMLMMFLTMSSQLGASFNEIILPKTTYVMIGFIIG 291

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + +   +P +    +K   L  F  ++ G    G+ G+ +   L   I V+ K     
Sbjct: 292 QLVDNFLSQPLIFSKSVKSHPLEIFLIILCGGLLWGVTGMVVAIPLYTAIKVVLKVFFTE 351

Query: 349 IKE 351
             +
Sbjct: 352 NSQ 354


>gi|160935591|ref|ZP_02082966.1| hypothetical protein CLOBOL_00481 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441335|gb|EDP19045.1| hypothetical protein CLOBOL_00481 [Clostridium bolteae ATCC
           BAA-613]
          Length = 380

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 104/327 (31%), Gaps = 2/327 (0%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +I +    L  FF P +   +I   + P+      + +      +++   + + L I  
Sbjct: 27  LLICLLGPKLLKFFMPFVIGWVIAMIANPLVRFLERRVKLVRRHSSIVIVAAALALVIGL 86

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKI 135
           L  L     + +++ +  +               +    ++    +   +  +   +   
Sbjct: 87  LYLLVSRTFVLLRQFIIDLPGLYAGIEGDVARSMEQLEHLFDFMPDSIQQSWAQFGNNLG 146

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +           A           +  +  I++ +FF  D   I   + +     
Sbjct: 147 SYMGTVVEKIASPTVEAAGTVAKSLPAMLVYTVVTILSAYFFIVDRDRILAAIKAHMPQW 206

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
              Y   +   V  +I   F+    I     L+L   + + GV        + A +  +P
Sbjct: 207 AGRYGLYLKGEVRHLIGGYFMAQFKIMAVVWLILTVGFIVLGVGYGPLWAFLIAFLDFLP 266

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                +       + + G  +      L   +   +  + ++P LVG  + LP L T F 
Sbjct: 267 VFGTGTALLPWGLIKLLGGEYAFAAGLLLIYVLTQVTRQIVQPKLVGDSMGLPPLLTLFL 326

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  G +  G+ G+ +   +  L   ++
Sbjct: 327 LYLGFKADGIAGMILAVPIGLLFVNLY 353


>gi|307293615|ref|ZP_07573459.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
 gi|306879766|gb|EFN10983.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
          Length = 360

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 93/345 (26%), Gaps = 20/345 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +    W  M I +  L  L      ++ AL++                    +   I  +
Sbjct: 26  KRAGVWFAMGIAIALLVLLAQPILLIMGALVLATMMDGGTRLLGRLLPIGRGWRLCIILI 85

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   +            + + +   V           + L           L  + + 
Sbjct: 86  AALTFLVYTFYLTGSSLAAQAQAMRVIVETQINRIGQWLQQLGVTTTPEDFKSLAQQAMR 145

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                    +      +    S + M++   F   +     + +
Sbjct: 146 S--------------------LGRVTAAVGTMVGAITSGVMMLVLAIFIAMEPKLYERGV 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +        +  I+  +   +R    G  I    EG+      W  GVP    LG++T
Sbjct: 186 AWMLPMDKRGRFYTIADKMGWTLRRLMFGRLIGMAVEGVGTWLLLWAGGVPMAGLLGILT 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + A +P    I    + + +            F        +    + P +      L 
Sbjct: 246 GLFAFLPNIGSIISGVLIVLVGFSAGADAGLYAFGVYLAVQIVDGYLIVPMVAKRATDLA 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                   +      G++GLF+   ++A+I V  +E   A++   
Sbjct: 306 PALVLAAQILFGALFGIMGLFLADPIVAMIKVWLEERSKALEVEN 350


>gi|169333672|ref|ZP_02860865.1| hypothetical protein ANASTE_00056 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259666|gb|EDS73632.1| hypothetical protein ANASTE_00056 [Anaerofustis stercorihominis DSM
           17244]
          Length = 381

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 115/339 (33%), Gaps = 17/339 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--------------SKKEESSTFLAVI 65
           +L  +    G  +P +    + F     +  F                +    S    +I
Sbjct: 32  VLGVVGTAFGILSPFIIGFALAFILNKPFVFFRDKALKVLIDKKKKKERVGLRSGLAILI 91

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V V  L ++   F+    +  +  LV  +   +++   +   + D       +E    
Sbjct: 92  VYVLVALLLVILSSFVIPQLVTSISGLVDYIPQYSKNLFDMIDNVVDKFI---INETMLD 148

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +    +  I +   + +  +  I  F S F    ++  +++I  I  L       +   
Sbjct: 149 TIQKASTTIISTMKTVLSGAVPAIVSFVSNFASNVINIAIAVIVSIYLLIDKDHLIYQYR 208

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + +           ++S +  K       G  I AI  G++      +  +P  + +G
Sbjct: 209 LIIKAFFSEKKAKRILEVSDLTAKTFSDFIGGQIIDAIIIGVLCSIGLAVLKIPYALLIG 268

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I     +IP   P   +  S+ +L     F A    ++  +   +    + P +VG  +
Sbjct: 269 TIVGFTNIIPYFGPWIGSIPSVLILFMVRPFYALIFIVFVIVLQQVDGNIIYPHVVGNSV 328

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L  L   F ++ G    GLLG+ +G    A+   + KE
Sbjct: 329 GLGALFVTFSIIVGGGLFGLLGMILGVPTFAVCYTLLKE 367


>gi|225621492|ref|YP_002722751.1| hypothetical protein BHWA1_02594 [Brachyspira hyodysenteriae WA1]
 gi|225216313|gb|ACN85047.1| predicted transmembrane protein of unknown function [Brachyspira
           hyodysenteriae WA1]
          Length = 372

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 130/355 (36%), Gaps = 10/355 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI--------YSSFISKKEESSTF 61
                 I   I +    L+ F   +  A++      P+        Y             
Sbjct: 9   IFFIAFIFLSIFIMYKLLRPFGMIIFFAVVFYVILNPLFIKAMGKSYKKTDKLSIIKKNT 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           LA++ ++  + +F+VP   L Y  ++++ ++ +  +    +        +        S 
Sbjct: 69  LALLFSLISLIIFLVPTSILAYTIIVQLIDISNIGIKYFMNLDVNEVINNSNINNFLKSL 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +         S     T    ++ +  +        +  S IFM+ +LFFF+ DG
Sbjct: 129 PIDVSMETILKRIQDSSLSNLTFISSYLTQNVAGLLKSTGRFVSSFIFMMFSLFFFFVDG 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  Q+ +L       Y  ++ + V + I+    G     I +G      Y + GV + 
Sbjct: 189 EYLIGQVRTLVPID-EKYLDRLIKQVSEGIKGIVFGNLFTGIFQGFCAFIVYTVFGVTNS 247

Query: 242 VALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                +T I + +P     I +  + I  LI G I  A    +     + I D  +RP L
Sbjct: 248 FTFAFLTIIASFMPIIGTTIIWIPLGILFLINGEIIRAIIFIVCSWFFITIPDNFVRPLL 307

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +G  I+L  L  FF ++GGV   GL G+ +GP+   L   I K          +K
Sbjct: 308 LGNRIELHPLFIFFAILGGVLFFGLSGIILGPLSFILFFEIMKIYNEERLLEAKK 362


>gi|145632587|ref|ZP_01788321.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           3655]
 gi|145634664|ref|ZP_01790373.1| hypothetical protein CGSHiAA_05546 [Haemophilus influenzae PittAA]
 gi|229844571|ref|ZP_04464711.1| hypothetical protein CGSHi6P18H1_09655 [Haemophilus influenzae
           6P18H1]
 gi|144986782|gb|EDJ93334.1| molybdenum cofactor biosynthesis protein [Haemophilus influenzae
           3655]
 gi|145268209|gb|EDK08204.1| hypothetical protein CGSHiAA_05546 [Haemophilus influenzae PittAA]
 gi|229812820|gb|EEP48509.1| hypothetical protein CGSHi6P18H1_09655 [Haemophilus influenzae
           6P18H1]
          Length = 348

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 114/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   +      
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRHVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     I     LS         
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKILLSQRINDLTALSQRF------ 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 113 -----NLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S       A  ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAAKEERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGVGFGVAVGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|317129332|ref|YP_004095614.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474280|gb|ADU30883.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 353

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 53/338 (15%), Positives = 119/338 (35%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  +    + I   + + +  + LYF+     P++ ALI      PI +  I + + S +
Sbjct: 1   MATSASIKKYIYIVLGIIVAALLLYFVLPVSVPIIVALITALFLAPIVNVLIRRAKLSRS 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I  +S + +  + + FL    + ++   +  +               +     +  
Sbjct: 61  LAVFIVFISFVLVISLIVYFLLTRAITQLNSFIENLPYTINEIAYAWTTFLNNIESQFGQ 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                       +               +    +   +    Y +S++  +IAL+ F  D
Sbjct: 121 YSPDLRQEIDDVVMGFLIETRMNLQEIDLVGHVTSILIKIPSYIVSLLVYLIALYLFLMD 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + ++  S            ++  +  V+   F    +++I   +V     W+     
Sbjct: 181 LPRLKEKAMSYMTDKTAEKVTFMASRLSYVVFGFFKAQFLVSIIIFVVTLIGLWIIAPEV 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  ++  IP    I+  A      I           L  A  L  + +T+ P +
Sbjct: 241 AIIMSIVIWVIDFIPIIGSIAVLAPWALYHIIAGNTALAVQLLVLAAILLTIRRTVEPKV 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +G  I L  L T   L  G++ +G+LG  +GP+++ L 
Sbjct: 301 MGHHIGLSPLATLISLFIGLQLLGVLGFILGPLVVILF 338


>gi|293396591|ref|ZP_06640867.1| PerM family permease [Serratia odorifera DSM 4582]
 gi|291420855|gb|EFE94108.1| PerM family permease [Serratia odorifera DSM 4582]
          Length = 372

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 116/348 (33%), Gaps = 25/348 (7%)

Query: 1   MRETMLNPQGIMRWMIM---FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M  T+L  + +   +++    +IL  +        P L A+       P+       +  
Sbjct: 20  MGRTILTDRTLRMALLLAMIVVILAGVKAASDIVVPFLLAVFFAIVLNPLVVVLERWRIP 79

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +    ++   +V L+         + E    +           R L       
Sbjct: 80  R-----ALGIALLVAAVVVLLMLFIGMLGASLNEFARSLPQYRGMMAEKMRQL------- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + +    +   SL++++        ++ + R  S F     +  L ++ ++  LF  
Sbjct: 128 ---QYYADRFNITISLEVIAHYIDPAAAMNLVTRLLSHFSGAMSNIFLLLMTVVFMLFEV 184

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
               + + Q LD       P       +   + +    +  T+I++  G+++     L  
Sbjct: 185 PLLPYKLQQALDK------PHEGIANIQRAVQGVTHYLVIKTVISLATGVIVWIFLALLE 238

Query: 238 VPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V      G++  ++  IP     I+     I  L+   + +A  +     +   ++   L
Sbjct: 239 VRFAFIWGLLAFLLNYIPNIGSVIAAIPPLIQALLFNGVGDAVAVAGGFVLINMVIGNML 298

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            P ++G  + L  L  F  L+     MG +G+ +   L  +  +  + 
Sbjct: 299 EPRVMGRGLGLSTLVVFLSLIFWGWLMGPVGMLLSVPLTIIARIALEA 346


>gi|295699812|ref|YP_003607705.1| hypothetical protein BC1002_4201 [Burkholderia sp. CCGE1002]
 gi|295439025|gb|ADG18194.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 364

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/349 (12%), Positives = 124/349 (35%), Gaps = 12/349 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST--FLAVIA 66
           + +    ++ ++   +Y        ++ A+   +  +P+ +     +           + 
Sbjct: 10  RKVWTASLLALLFFVIYVASTTVLVIVFAVFFSYLIYPMVALVERVRPRRVPRVMSIAVV 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V V+ L  V           +   L +++    +  +P            +    + + 
Sbjct: 70  FVVVVALLAVVGSLFGVELQDQATHLFTQLPGLLRTDVP----------NRFPLPHFLEP 119

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L       + S+    ++    + R      +      + ++ + I  F   +DG  +  
Sbjct: 120 LRERIVDFVRSQIETGSDKAVPLARSLGLGVVHAASNLIYLVLIPILSFLLIKDGERMRD 179

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +L        W +I   V  ++      +  +++      G A+ L GVP    L V
Sbjct: 180 AFLALLNRRHRVLWSEIVDDVNVLLSKYVRALLFLSLATLFGYGVAFSLLGVPYAFLLAV 239

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
              ++  +P   P++  A+++ + +     +   L ++  +     D  L P+L+   ++
Sbjct: 240 SAGLLEFVPFAGPLAAVAITLVVAVFSGYPHLLWLVIFIGLYRLFQDYVLNPYLMSEGVE 299

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +       GL+ G +  G+ G+F+   ++A + ++   + +    + E+
Sbjct: 300 VSPFLVIVGLLAGDQLGGVAGIFLAVPVIATLKIVIGRARVFYSASHEQ 348


>gi|220908232|ref|YP_002483543.1| hypothetical protein Cyan7425_2839 [Cyanothece sp. PCC 7425]
 gi|219864843|gb|ACL45182.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 363

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 114/329 (34%), Gaps = 9/329 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  + +     +    FA +++A ++ F      S   ++        +VI  +  +
Sbjct: 30  LLVLNFWAVTSISQYFGPLFAVIITASLLAFLLNYPVSWIEAQ-GGKRAPASVIVFLLAI 88

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I   + L    + + ++L  ++    + G      LS     M          +   
Sbjct: 89  TILIGLGVTLVPVALAQAQQLAVRLPEWLEKGRQQIVALSQWAEAMGFPLDIDAIGTQLL 148

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    L    ++      S      ++  L     II  F+  ++G  + + L   
Sbjct: 149 DRLRDQLQALTQGALNLAVGTVSSVLDALVNIIL----TIILTFYLLQNGDELWRSLIEW 204

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   + +    +    ++ FLG  I++    + L   Y L  VP  +   +   ++
Sbjct: 205 LPVKIQQPFSQ---TIRLSFQNYFLGQLILSTCIAIGLVPTYLLLKVPFGLLFSLAIGLL 261

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            + P G  +    +   L+   +I+      + G I   I +  + P ++G    L  + 
Sbjct: 262 TLFPFGGTV-GNILVGLLVGLQDIWLGLRAVIAGIIVQHIFENFVAPRVIGSVTGLNPVW 320

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            F  ++ G +  GLLG+ I   + A+I  
Sbjct: 321 VFLAILAGAKISGLLGVVIAVPMAAVINT 349


>gi|88607126|ref|YP_505557.1| hypothetical protein APH_0995 [Anaplasma phagocytophilum HZ]
 gi|88598189|gb|ABD43659.1| putative membrane protein [Anaplasma phagocytophilum HZ]
          Length = 363

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 113/355 (31%), Gaps = 14/355 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   ++   ++    FL+      + AL I +   PI +  +     S    + +   
Sbjct: 2   KYINLLLVALAVVGIGLFLRPVLYACIYALFIAYLLNPIVTKLV-LIGMSRAVASFVIIC 60

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLA-----------NQHGIPVPRWLSDIPGGM 117
           +   +    ++ L      +   ++  ++                   +P +        
Sbjct: 61  ASAGVIGTLIVMLMPVLYSQALGVIKLLIDRVPFLNLEDIKDILSSSGLPSYQEIKSATE 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               L T  L      + L       +         +   +      ++I+  ++  F+ 
Sbjct: 121 NPLNLLTSDLFRGDGAEFLKLFKDAPSYFVKAVAGIAHSSLGIGSSIVTILTSLLLSFYI 180

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +  SI++    L    +   +      + +VI S   G T++ +         + +  
Sbjct: 181 LANWPSITKIALELIPRSYVRDFALCFHKIDEVISSYLRGQTLVCLVLACYYSFCFVVIR 240

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI--FNATCLFLWGAIELFIVDKT 295
           +   + +G ++ ++  +P   P     +S+ + I           + L   +   I    
Sbjct: 241 LEYSLVMGFVSGLLTFLPYIGPSLCCILSVCIAISQGFGITKVVLVALMFLVGQMIESYV 300

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + P +VG  + L       G+V      G  G  +     A+++V+ + ++   K
Sbjct: 301 VTPGIVGKRLALNQAWLVIGVVVFSSHAGFWGALLSVPFTAILSVLIQFAVKKYK 355


>gi|39937281|ref|NP_949557.1| hypothetical protein RPA4221 [Rhodopseudomonas palustris CGA009]
 gi|39651139|emb|CAE29662.1| putative permease [Rhodopseudomonas palustris CGA009]
          Length = 371

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 107/323 (33%), Gaps = 19/323 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K FF P+++A ++G    P  S     +   +    +I T+ +  +  +  L        
Sbjct: 57  KPFFLPMVTAFVVGTMVSPAASFLERFRIPRAVSAVLIVTLGLGTVIFMIGLISAPLI-- 114

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
              E  S++             L          ++W +  S     + L +  ++   ID
Sbjct: 115 ---EWSSRIPEIGSLLRDKLHVLDR------PLQMWRQIQSSLSGSESLPQPSVQMPKID 165

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           ++  F S      L + + ++  +                + +           +I   +
Sbjct: 166 WVFEFLSPTLTEVLLFLVMLVLFVAGW------KDLRRSLVMNFAGREARLRTLRILNEI 219

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              + +  L +T+I +  G   G     AG+P+   LG + A++  IP   P     +  
Sbjct: 220 EGSLGAYLLTVTVINLCYGAATGLLCAAAGMPNPAGLGALAAVLNFIPIIGPFVMFVIMT 279

Query: 268 YLLIKGNIFNATCLFL--WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + I         L       +  F     + P ++G  + L  L  F  L       G 
Sbjct: 280 VVGIISMPTLGAGLLAPFGFVLLTFFEGHFITPTIIGRRLSLNTLAVFITLAFWTWLWGP 339

Query: 326 LGLFIGPVLMALIAVIWKESIMA 348
           +G F+   L+ +  V+ +  +  
Sbjct: 340 MGSFLASPLLIVGLVLKEHLMPE 362


>gi|86133981|ref|ZP_01052563.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
 gi|85820844|gb|EAQ41991.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
          Length = 360

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 20/332 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +     ++ A ++     PI      K +  +T   V   + ++ L    ++      + 
Sbjct: 31  QSVITYIIIAAVLSLIGRPIILFLRKKLKFPNTLAVVTTMILMLSLLTGIVVLFIPLIIE 90

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           + K L    V   Q+ +               +++     S    +    ++    N   
Sbjct: 91  QGKSLSLLEVDQLQYNVQ-----------SIFNQITAYFSSKGIDVLKELKSIDFANQFK 139

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            IP   +       +  + +  ++   FFF +D     + + +L  +     +     ++
Sbjct: 140 TIPNIFNSILGTLGNLSVGLFSVLFICFFFMKDSRLFKKGILTLIPNNSENKFSHSLEVI 199

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             ++   F+G+        ++        G+ + V +  + A++ +IP   PI    +  
Sbjct: 200 NNLLSRYFIGLIFQITILFIIYTIVLLFFGISNAVVIAFLCALLNLIPYVGPIIGGLLMF 259

Query: 268 YLLIKGNIF---------NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            L +  NI           +  + ++  +   + +   +P +     K   L  F  ++ 
Sbjct: 260 TLSMTSNIGNDFQAFILPTSLKIMVFYFLAQVLDNFVSQPVIFSKTTKSHPLEIFLVIII 319

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           G    G++G+         + VI KE +   K
Sbjct: 320 GGLLFGVIGMITAVPSYTALKVILKEFLSENK 351


>gi|323142132|ref|ZP_08076977.1| putative ATP synthase F0, A subunit [Phascolarctobacterium sp. YIT
           12067]
 gi|322413392|gb|EFY04266.1| putative ATP synthase F0, A subunit [Phascolarctobacterium sp. YIT
           12067]
          Length = 375

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/371 (10%), Positives = 110/371 (29%), Gaps = 21/371 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF----------LKGFFAPVLSALIIGFTSWPIYSSFISK 54
           M             +++ +L+           +     P +    + F    +       
Sbjct: 1   MKERNPYCLLAFAIVLIWALWNYNVSLKLLAGIYDVLLPFVIGGCMAFIVNVLMKKLEQY 60

Query: 55  KEE----------SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG- 103
                              +++   ++      +L +       MK LV  +  A     
Sbjct: 61  WRIIFKQSVVSRFERPVCLLLSLAIIIGFLAFFVLTIVPELHASMKMLVKMLPPALAKLN 120

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           I + +   ++        +            +      K   ++      +    +  + 
Sbjct: 121 IYLQQKAQELSFSADELAVVQAQAKEVYQTMLNYLQNNKRLLLEQTFLATASLVEVLANC 180

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  +  I  L   +R   +    + +       AY   + +   ++ R    G  ++A+
Sbjct: 181 VIGFVVAIYCLLEKHRLVRNFKWVIFAFCSKERAAYILHVLQTAEQIFRGFVGGQLVVAL 240

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             G++   +  L   P    + ++ A++++IP    +    +  +L++           +
Sbjct: 241 LLGVMYFVSMKLCSFPYATVISLLVAVLSLIPILGTLISALIGCFLILVAAPEKIWYFII 300

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +   I    L P +VG  + L  L     +  G    G+ G+ +   L +++  +  
Sbjct: 301 LYIVLQRIEADLLYPKIVGKAVGLSELWVLAAVTIGASLGGVAGMIVCVPLFSVLYALLA 360

Query: 344 ESIMAIKENKE 354
           E +  +   K 
Sbjct: 361 EKVKRLLAEKN 371


>gi|298346096|ref|YP_003718783.1| hypothetical protein HMPREF0573_10970 [Mobiluncus curtisii ATCC
           43063]
 gi|304390145|ref|ZP_07372099.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|298236157|gb|ADI67289.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
 gi|304326627|gb|EFL93871.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
          Length = 469

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 96/324 (29%), Gaps = 21/324 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I+  L  + G F P   A  +     P     I  +       A++  V +  +  + L 
Sbjct: 64  IIFLLSLIAGVFMPTFLAFSLALAVRPASEWLIRHRW-PVGLAALVNIVLLFAILFIMLG 122

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +       + EL                 L                     ++    + 
Sbjct: 123 LIAIAITAMVTELPRYGAKFQALYEHAINQLDRRGF-------------DTSAVLDSWKN 169

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                   ++  FA++           I+  I  +      G ++  +  +     +   
Sbjct: 170 VDINRVFSYLSGFANQISGAGTTLFFIIMVAIFVV------GDTVVVRRRAAELASYAPG 223

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +    R     +R+ FL  T+      LV     +  GVP+    G++  +   IP    
Sbjct: 224 FAIALRNFSLRVRTYFLMTTVFGAVVALVDVGILYAFGVPTPWTWGILAFVANYIPAVGF 283

Query: 260 IS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I       +  L    ++ A  +F+   +   +    L+P + G  + L    +F  L+ 
Sbjct: 284 ILSMIPPILLALALDGVWPAVGVFIGYMVASLLFLNILQPRIAGNAVGLNATVSFLSLMV 343

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
               MG LG  +   L      I+
Sbjct: 344 WSTVMGPLGAILAVPLTLFFKAIF 367


>gi|83815005|ref|YP_445462.1| transporter, putative [Salinibacter ruber DSM 13855]
 gi|83756399|gb|ABC44512.1| transporter, putative [Salinibacter ruber DSM 13855]
          Length = 442

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/329 (14%), Positives = 115/329 (34%), Gaps = 7/329 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L  +     P  +  ++ +   P+      + +      +++ T  V+ +F++ +L L
Sbjct: 110 WTLDKVSRVLVPFAAVYLLAYLLNPLVERLRERYQVPRWLPSLVVTSLVVGVFVLFILIL 169

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 + + L  +V+   Q         + +     A  L  + +       I  +   
Sbjct: 170 APNIANQAQALSDRVLGTVQTLRAWLEASTVLDALEGAGLLQKQEVIAQLQALIKEQAGR 229

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +  + +      F    L     +  + + LF+  +D  ++   L  L          
Sbjct: 230 LPSAAENLVASLGSF----LGVVTLLALVPVILFYTLKDYPTVQSGLVDLFPTAGGRR-- 283

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                   ++   F G  +I+I   + +    +L  +P  + +G++  ++ +IP    + 
Sbjct: 284 DYLVEAGSIVGRYFRGQLLISIIATINVSVLLFLFDIPFWLLIGLLAGLLNLIPQIGALI 343

Query: 262 FTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              V   + LI G+   A  +      E  +    L P ++   + L  L   F L+   
Sbjct: 344 TMVVGALVALILGSWVKAVIVIAVLLGESLLEQSVLTPNILSYQVGLHPLLVLFSLLVFG 403

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             +G+ GL I   + A++   ++     +
Sbjct: 404 TLLGVFGLLIAVPMTAILMTGYRAFREEL 432


>gi|313837035|gb|EFS74749.1| conserved hypothetical protein [Propionibacterium acnes HL037PA2]
 gi|314929378|gb|EFS93209.1| conserved hypothetical protein [Propionibacterium acnes HL044PA1]
 gi|314971539|gb|EFT15637.1| conserved hypothetical protein [Propionibacterium acnes HL037PA3]
 gi|328907912|gb|EGG27674.1| putative membrane protein [Propionibacterium sp. P08]
          Length = 344

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/350 (15%), Positives = 122/350 (34%), Gaps = 14/350 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++    ++ +   L+       PV  AL++    WP+ +     +       + I  + +
Sbjct: 1   MVIAAFIYGLYQVLHAASEVSVPVAVALMLTAAMWPLANWLSRHR-IHRGIASGICLLLL 59

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L       +     L+ +EL ++ V + +  +               ++L  K  +  
Sbjct: 60  IILVGGVFTLVGAQIALQWRELGNQSVASFKQALQWLSRSPLHTNKAQLTDLMHKAETAM 119

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
              +              I   A+  G     +   ++  + A FFF  +G  ++++   
Sbjct: 120 AGSQ------------GRIASTAAAAGTQIGRFSAGLVMALFATFFFVYEGDKLAEKSAV 167

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L      A     ++     + +      I+A  +GL  G    + G    VA+G +T I
Sbjct: 168 LIPREHRAKILDAAKRGWVALVAYVRAAVIVAFVDGLGAGIGAAIIGSSMSVAIGALTFI 227

Query: 251 MAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +A +P      +       +L+    F A  + +     + I    L+PFL+G  + +  
Sbjct: 228 LAFVPIVGALTAGVVAVAVVLVTLGFFKALIMLIVFVAVMQIEGHILQPFLLGKAVSIHP 287

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           L    G+  G    G++G  +   ++A      K        ++   + +
Sbjct: 288 LIVLLGIAVGAIISGIVGALLAIPIVAFGVAFIKALNPETPADEVPPNHD 337


>gi|170782757|ref|YP_001711091.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157327|emb|CAQ02514.1| putative integral membrane protein [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 411

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 101/325 (31%), Gaps = 14/325 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  L+    P+  A+++     PI +               I+ + V+      +  
Sbjct: 65  AWLVIQLEYVVIPLFLAVVLAALLVPISNWMQRH-HVPKWLAVAISEIGVIVAVAALVYL 123

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    + +   + ++ +                      ++ + + +             
Sbjct: 124 VTTQIIGQYDSIRAQTLTRYADLRGFLTDGPLQLSEQQLNDAYAQAVD------------ 171

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +   A             ++ ++ +  F   DG  + + +  L   L     
Sbjct: 172 AVQRDAGALLSGALSVTSSLGHVLTGVLLVLFSTLFILIDGAGMWRWVVRLFPRLARPAV 231

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
               +     +++      ++A+ + + +     + GVP  + +GV+  + + IP    +
Sbjct: 232 DGAGKAGWTTLQNFVKVQVLVALIDAVGIAGGAAIIGVPLAIPIGVLVFLGSFIPIVGAV 291

Query: 261 -SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            + T      L+   +  A  +     +   I    L+P ++G  +K+  L     +  G
Sbjct: 292 VTGTLAVFVALVYNGLTQALIMVGIVLLVQQIEGHVLQPLIMGSVVKVHPLAVVLSVAAG 351

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               G+ G F    L+A +  + K 
Sbjct: 352 GMVAGIAGTFFAVPLVATLNSMVKH 376


>gi|323138131|ref|ZP_08073204.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322396593|gb|EFX99121.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 351

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 131/335 (39%), Gaps = 14/335 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +  + V+L     F + +  AL++       + +  +      +F A ++ + V  + 
Sbjct: 27  LTLVFVAVTLLLAAPFLSSLTWALVLAVVFLRPHRAIEAVMG--RSFGAALSVLIVALII 84

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           + PL F+    + E  E  + +      G     +L   P     +              
Sbjct: 85  VGPLAFVSERLINEAVEGAAYIQQEVTQG-KWVDFLKAHPWLETVNNWIEGQFDLQD--- 140

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 + +    F+    + F        L+++     LFFF RD  +  + L  L   
Sbjct: 141 ------VLSRVGAFLTNAGALFIRQSTGQALTVLLSFYMLFFFLRDRKAGVEALLRLSPF 194

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 +K+   +   I +   G   +A  +G + G  +W    PS V   +I  ++A++
Sbjct: 195 S-DIETRKLIVRIRDTIYAIIYGTLAVAALQGALGGFIFWWLNFPSPVFWALIMGLLAIV 253

Query: 255 PGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +   +I+L I+G   +A  L LWG + +   D  +RP L+   ++L   P F
Sbjct: 254 PVLGTFVVWVPATIFLAIEGRWADALTLGLWGGVVIASSDNLVRPLLISDTLRLHTAPAF 313

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             ++GG++  G  GL +GP+ M   +++ +     
Sbjct: 314 IAMLGGIQLFGPSGLVLGPIAMTTTSLMLEFWRRR 348


>gi|255517443|ref|ZP_05385119.1| hypothetical protein CdifQCD-_10076 [Clostridium difficile
           QCD-97b34]
          Length = 301

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/302 (9%), Positives = 91/302 (30%), Gaps = 4/302 (1%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
           F  K +        ++ + +  +    +  L       +  L++++ +   +        
Sbjct: 3   FEVKFKAHRLLAIFLSYIFIGFILAFAIRLLIPSIANTLNRLINEMPMYTDYIDSFIEK- 61

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                 +   +    H+ H     +   +            +      +  +  +  I  
Sbjct: 62  --NMSNIDFLKTLIPHIQHSLDNLLKEASNFVGKIPKNFLIYTLSISSMLFNMTMGFILS 119

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           I  ++   +      + L S           +  R    +     LG  + ++  G++  
Sbjct: 120 IYIIYDKEKIALGFKRFLYSSTARNKADNIIEFFRTTHDIFYDYLLGRILDSLIIGIIAF 179

Query: 231 SAYWL-AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
             +     + + + L  I  +  +IP   P       I + I  +      +  +  I  
Sbjct: 180 LGFQFVIRIENALFLASIIFLGNIIPYFGPFIGAIPPIAMTILYSPQKTIWVIAFLFILQ 239

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    + P ++G  + +  +     ++ G    G +G+F+   + A++     + I   
Sbjct: 240 QLDGNFIEPKVMGNQVGIGAIWVISAILVGQSLFGFIGVFLSVPIAAVVKTYVDKYIDNR 299

Query: 350 KE 351
            +
Sbjct: 300 LQ 301


>gi|225872604|ref|YP_002754059.1| hypothetical protein ACP_0952 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791289|gb|ACO31379.1| putative membrane protein [Acidobacterium capsulatum ATCC 51196]
          Length = 359

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 119/349 (34%), Gaps = 13/349 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    + I+  + + ++L  +Y L+     V  + +I     P+  + +  +       
Sbjct: 10  QSRETRRNILFTIAVLVLLYYVYVLRAELTLVYVSALIAVVLTPLARAIMRLRIGKWHPG 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             ++ V ++      +     + +                   +  +++++P        
Sbjct: 70  LGLSVVLLIAAVAGLISVFALFALPPA-------------FRDLREFVTELPQRAPELLT 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             KH+   Q + +        +       F  +    +     ++   I+   +F  DG 
Sbjct: 117 RLKHVPLMQRIDVSQLNARIQDFAGNFATFLLKSAKDWAHVVFAVGMGILLTVYFMIDGS 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q    L      A   +        +    LG  ++ +  G+     + +  V    
Sbjct: 177 RAYQWGMKLVPVEHRARLDRTLTRAEARMGRWLLGQAMLMLILGVCSTVVFVILHVRYAY 236

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           ALGV+  +  +IP    +   ++++ +    +      + ++ AI   +    L P ++ 
Sbjct: 237 ALGVLMGLFNIIPVVGAMITVSLALVVAALDSWGRVLGVLVFYAIYAQLETSVLTPRIMQ 296

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             + LP L     L+ G    G+ G  +      L+AV+ +E ++A + 
Sbjct: 297 SSVNLPGLAILIALLIGSALAGIAGAAVAVPTAVLLAVLIEEYVIAGEH 345


>gi|152992436|ref|YP_001358157.1| hypothetical protein SUN_0842 [Sulfurovum sp. NBC37-1]
 gi|151424297|dbj|BAF71800.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 352

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 99/341 (29%), Gaps = 22/341 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              Q  +    M I +  L        P L A+ +     P+++   SK       L V+
Sbjct: 13  PVNQLFLLTATMLITIFLLKAASAVIVPFLIAVAVSIILAPLFTRLESKHIPKPVSLIVV 72

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +S++ + ++                  +      +   +            A      
Sbjct: 73  ILLSLLPIILLGGYV------------AEQAGEFAANYQSIKANFMQSLQAFIAQLGHYG 120

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  L  + E       +  +   A+            + FM++   +FY     I+
Sbjct: 121 IHIDDAKLNAVLEKSNIAGILKNLAAQANEQFSNIFLIFFMVAFMLMESTYFYNKMMKIA 180

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                            +   + + I+S F      ++   +   +  W   +P +    
Sbjct: 181 ---------KDYQVDGNVMLELLEKIKSYFSIKVKTSLLTAVWAFTVLWYYEIPYYYLWA 231

Query: 246 VITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+   +  IP    I       ++ LI   I     + LW  I   +V   L P ++G  
Sbjct: 232 VLAFALNFIPVIGSILAAIPAIVFALISHGIGTTLWVALWYVIINMVVGNILEPKIMGKG 291

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + L  L  F  +       G  G+ +   L   +  ++ + 
Sbjct: 292 LGLSALVIFLSMTFWGWVFGPAGMILSVPLTMTVQYLFGQY 332


>gi|206580879|ref|YP_002238720.1| inner membrane protein YdgG [Klebsiella pneumoniae 342]
 gi|206569937|gb|ACI11713.1| inner membrane protein YdgG [Klebsiella pneumoniae 342]
          Length = 374

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 106/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL +     P+    + +          +   
Sbjct: 42  KMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLV-RCRVPRVLAISMLIG 100

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L IV L  L        + L        +    +  WL  +   +   EL      
Sbjct: 101 LIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRMGFTVSVVELNKYIDP 160

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             + +    +       +   SI  +++ + F   +   +  +L
Sbjct: 161 ------------------NAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPAKL 202

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             +     +    +  T I++  GLV+     L  V      G++ 
Sbjct: 203 QQLMSRPVEGMGA--IQRAIDSVSHYLVLKTAISLVTGLVVWGMLVLLDVRFAFMWGLLA 260

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    +      I  +L+ G ++ A  +     I   +    L P ++G  + L
Sbjct: 261 FALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRVMGRGLGL 320

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  +  +  ++
Sbjct: 321 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIAKIALEQ 357


>gi|167888953|gb|ACA09746.1| PsfE [Pseudomonas putida]
          Length = 356

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 116/349 (33%), Gaps = 12/349 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    + + ++  +++F+   ++  L G  APVL+ +++ +    +  S   +       
Sbjct: 10  QRYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAYLMQGLVVSLE-RMRMPGGV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +     M L +V ++ +      ++  L +++         +   L +    + + E
Sbjct: 69  AVGLVFALFMGLLLVFIVVVVPLLWHQLITLFNELPGMLAKWQTLLLLLPERYPHLVSDE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +   +                +   F+     + ++  + ++ + I +FFF +D 
Sbjct: 129 QVLQAIEVARGEI--------GKFGQWALTFSLSSLPLLVNIMIYLVLVPILVFFFLKDR 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I Q +         A   +++ ++ + I +   G  I     G      + + G+   
Sbjct: 181 QMIGQWVRGYLPRE-RALITRVAHVMNRQIANYIRGKVIEIFICGGATYIGFVVLGLNYA 239

Query: 242 VALGVITAIMAMIPGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             L ++  I  ++P    +  T   + I L   G       L     I   +    L P 
Sbjct: 240 ALLALLVGISVVVPYVGAVVVTVPVLLIALFQWGWSDQFIYLMTVYGIIQVLDGNVLVPL 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L    + L  +     ++      G  G+F    L  L   +       
Sbjct: 300 LFSEAVNLHPVAIICAVLLFGGLWGFWGVFFAIPLATLFKAVLDAWPRK 348


>gi|15616743|ref|NP_239955.1| putative inner membrane protein [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11387270|sp|P57223|Y123_BUCAI RecName: Full=UPF0118 membrane protein BU123
 gi|25307062|pir||A84944 hypothetical protein yb1688 [imported] - Buchnera sp.  (strain APS)
 gi|10038806|dbj|BAB12841.1| hypothetical protein [Buchnera aphidicola str. APS (Acyrthosiphon
           pisum)]
          Length = 360

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 132/341 (38%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ LFI+P+ FL    +     ++  +   +     +    +    G      +  
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGSNDLELPELAWLQNIPLMGRKIFNSYQT 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+      I        +  +F        G+    + +  I M+      Y +G  IS
Sbjct: 130 LLNSDGGELIHKIRPYMGHATEFFIIQVRNCGL----FIVHSILMLFFSALLYWNGEKIS 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    L 
Sbjct: 186 ISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLM 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I     +I  G         I+L    +    T L +W     FI+D  LRPF +    
Sbjct: 246 IIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCFV-FILDHILRPFFIRIGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP L T  G++GG+ T G++GLFIGPV++ +   +    I
Sbjct: 305 DLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWI 345


>gi|237715047|ref|ZP_04545528.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409005|ref|ZP_06085550.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645608|ref|ZP_06723301.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|229444880|gb|EEO50671.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262353216|gb|EEZ02311.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639053|gb|EFF57378.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|295087834|emb|CBK69357.1| Predicted permease [Bacteroides xylanisolvens XB1A]
          Length = 341

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 139/351 (39%), Gaps = 20/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL I           + K++   +  A++ T 
Sbjct: 9   KYSLIVIILFMGIIIFRQITPFLGGLLGALTIYILVRGQMRYLVEKRKLKRSLSALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F++PL    +  + +++++             V  ++ +  G             
Sbjct: 69  ETIFVFLIPLGLTVWMVVNKLQDINLDPQTYIAPIQQVAEFIKEKTGYDVL--------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         T  +  +PR             +++  MI  L+F    G  +   +
Sbjct: 120 ---------GKDTLTFIVSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAYV 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T
Sbjct: 171 NDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVATIGYLLFGAPNILLLGFLT 229

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L       
Sbjct: 230 CFATIIPMVGTALVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMADT 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L T FG+V G+   G +G+  GP+L+AL  +          + +  + S
Sbjct: 290 HPLITIFGVVIGLPLFGFMGVIFGPLLLALFFLFVDMFKKEYLDLRNNLPS 340


>gi|149919863|ref|ZP_01908339.1| hypothetical protein PPSIR1_12198 [Plesiocystis pacifica SIR-1]
 gi|149819310|gb|EDM78743.1| hypothetical protein PPSIR1_12198 [Plesiocystis pacifica SIR-1]
          Length = 482

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 77/238 (32%), Gaps = 9/238 (3%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            GG W  E           +             D        F     ++    I   + 
Sbjct: 193 QGGGWVIEADPPKQDSLSDIIREIVASKGDELTDLAAAGVRGFISGVANFLADFILAFLI 252

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             F   D   I +   SL   ++   ++ ++  + + +     G  +I +  G +     
Sbjct: 253 AAFVLVDTQRIGRFTRSLVPEVYLGEFEDLAAGIDEGMAGVARGQILICVINGTLTYIGL 312

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN---------IFNATCLFLW 284
            + GV   + L ++ A++++IP    +  T   + + +               +  +  W
Sbjct: 313 LIFGVHYSLLLAMVAAMLSIIPVAGILIATIPVMGVALLSGDLGLEAGLAFGKSAAVLGW 372

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                 +    L P ++G    +  +   F L+ G+   GLLG  +   + ++   ++
Sbjct: 373 LVGIHLLETNYLNPKIIGIASNIHPVVLIFALLAGLDVGGLLGAVLAIPVASVFQTVF 430


>gi|183980476|ref|YP_001848767.1| transmembrane protein [Mycobacterium marinum M]
 gi|183173802|gb|ACC38912.1| conserved transmembrane protein [Mycobacterium marinum M]
          Length = 389

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 91/316 (28%), Gaps = 15/316 (4%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P+     ++          +  +    +    L F+    ++ + +L  +V  +      
Sbjct: 60  PVVDWLDAR-GLPRGAAVSLVLLGGFSILGGILTFVISQFIVGLPDLAYQVEHSIDSSRK 118

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                       W  E               +      N    +   A        +   
Sbjct: 119 ------------WLIEGPPHLRREQIDNAGNAAIEALHNNQAKLTSGAISTAATITELLT 166

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + + ++  L FF   G +I Q +  +             R     +        ++A+ +
Sbjct: 167 AAVLVLFTLIFFLYGGRNIWQYVAKIIPAHVRDRAMAAGRAGYGSLIGYVRATFLVALTD 226

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLW 284
              +G+   + GVP  + L  I  + A IP     IS     +  L+   +  A      
Sbjct: 227 AAGVGTGLAVMGVPLALPLASIVFLGAFIPLIGALISGLLAVVVALLAKGLVYALLTLAL 286

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 +    L+P ++G  + +  L     +  G    G++G  +    +A +    + 
Sbjct: 287 LITVNQLEAHLLQPLVMGRAVSIHPLGVVLAISTGGVLAGIVGALLAVPTVAFLNNAMRV 346

Query: 345 SIMAIK-ENKEKISSN 359
            +        ++   +
Sbjct: 347 LLAEDPIAEAQQQDQD 362


>gi|170723139|ref|YP_001750827.1| hypothetical protein PputW619_3978 [Pseudomonas putida W619]
 gi|169761142|gb|ACA74458.1| protein of unknown function UPF0118 [Pseudomonas putida W619]
          Length = 356

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 113/348 (32%), Gaps = 12/348 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
               + + ++  +++F+   ++  L G  APVL+ +++ F    + ++   +    +   
Sbjct: 11  RYFSDEEAVVLAVLLFLAFTAVLTLGGMLAPVLAGMVLAFLMQGLVNALE-RLRVPTRLA 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++     M    V LL L      ++  L +++         +   L +    + + E 
Sbjct: 70  VMVVFALFMSALAVFLLVLVPLLWHQLITLFNELPGMLGKWQSLLLLLPERYPHLVSDEQ 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +   +                +   F+     + +   + ++ + I +FFF +D  
Sbjct: 130 VLHAIESVRGEI--------GKFGQWALSFSLSSLPLLVSAMIYLVLVPILVFFFLKDRE 181

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I + +             ++   + + I +   G  I  +  G+    A+   G+    
Sbjct: 182 QIGRWVSGYLP-RQRTLLNRVGTEMNRQIANYIRGKGIEILICGIATYIAFISLGLNYAA 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++  +  ++P    +  T       L   G       L    AI   +    L P L
Sbjct: 241 LLALLVGLSVVVPYVGAVVVTVPVTLIALFQWGWGDQFIYLMTVYAIIQALDGNVLVPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               + L  +     ++      G  G+F    L  LI  +       
Sbjct: 301 FSEAVSLHPVAIICAVLLFGGLWGFWGIFFAIPLATLIKAVLDAWPRQ 348


>gi|56421273|ref|YP_148591.1| hypothetical protein GK2738 [Geobacillus kaustophilus HTA426]
 gi|56381115|dbj|BAD77023.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 372

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 102/343 (29%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    + +  +++Y++     P + A  I     P+  +   K +        +  +
Sbjct: 11  RFFLVIAAVALGAIAMYYIATVTYPFIIAFFIAMIINPLVDALERKAKMPRWLAVSVTLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +       +  L    +   + L   V    Q  I                +L     S
Sbjct: 71  MLFAAVAGLVTLLVAEIVSGTQYLARVVPEKFQALITYMETFVADQIIPIYKDLAGMFKS 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              + +      ++  G          +  I +   +      +     IF ++A FF  
Sbjct: 131 LSAAQQDTIMQNIQAVGKKIGTTVGEFVQSILQNIPQLLAWLPNAATVFIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   + +              K +   + + +         +     +++     +  V
Sbjct: 191 KDWHRLMRMAQQWLPTKARTSGKTVFLDLKRALFGFIKAQATLISITTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +I   + ++P           I   +               + + +  + + P
Sbjct: 251 DYAITIALIIGFVDLLPYLGTGIVFVPWIIYTMASGDIPFAIGLGVLYVVVLVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G + +G LGL  GPV + +I  +
Sbjct: 311 KVLSSTIGLDPLATLIALFVGFKLLGFLGLIAGPVALVIIRTL 353


>gi|219681498|ref|YP_002467883.1| hypothetical protein BUAP5A_121 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471179|ref|ZP_05635178.1| putative inner membrane protein [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624341|gb|ACL30496.1| hypothetical protein BUAP5A_121 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 360

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 131/341 (38%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ LFI+P+ FL    +     ++  +   +     +    +    G      +  
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGSNDLELPELAWLQNIPLMGRKIFNSYQT 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+      I           +F        G+    + +  I M+      Y +G  IS
Sbjct: 130 LLNSDGGELIHKIRPYMGRATEFFIIQVRNCGL----FIVHSILMLFFSALLYWNGEKIS 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    L 
Sbjct: 186 ISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLM 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I     +I  G         I+L    +    T L +W     FI+D  LRPF +    
Sbjct: 246 IIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCFV-FILDHILRPFFIRIGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP L T  G++GG+ T G++GLFIGPV++ +   +    I
Sbjct: 305 DLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWI 345


>gi|311106377|ref|YP_003979230.1| hypothetical protein AXYL_03195 [Achromobacter xylosoxidans A8]
 gi|310761066|gb|ADP16515.1| hypothetical protein AXYL_03195 [Achromobacter xylosoxidans A8]
          Length = 376

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 134/355 (37%), Gaps = 7/355 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    ++  ++  ++  SLY L+ F   ++ A  I   +WP+  +             + 
Sbjct: 11  LARIILVIVILAGLMAGSLYILRPFLPGLVWATTIVVATWPVMLAIQRYCGGRRWIGTLT 70

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG--GMWASELW 123
             V ++ + ++PL  +     L    +++ V     + +  P          G   +  W
Sbjct: 71  MLVILLFVIVLPLYEVISTLALHSGTIMAAVKSLPDYALLAPPAWVQGIPLVGPKIAHEW 130

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                      +       T+ + ++   A+  G   +   ++++   I     Y  G  
Sbjct: 131 QTLSDAGAGGLLAKLEPYLTSAVTWLLGHAAIVGAFMMHMLITVVVAGI----LYTKGEV 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               +      L         ++  + IR+  LG+ + A+ +  + G   W+AGVP+   
Sbjct: 187 AVDFVRRFFNRLAGQRGLAAVKLAGQAIRAVALGIVVTAVVQSGLGGIGLWIAGVPAAGI 246

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  +  ++ +   G  +      ++L        A  L +W  +   + D  LRP L+  
Sbjct: 247 LTALMVMLCLAQLGPFLPMLGGVVWLFQNDMKLAAAVLLVWAVLVAML-DNLLRPLLIKR 305

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            + L  L    G++GG+   G++GLFIGPV++A+   + K  I  +       + 
Sbjct: 306 GVNLSLLLILVGVLGGLFAFGIVGLFIGPVILAVTHTLLKAWIDEVPPPSALATE 360


>gi|261350100|ref|ZP_05975517.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
 gi|288860886|gb|EFC93184.1| conserved hypothetical protein [Methanobrevibacter smithii DSM
           2374]
          Length = 348

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 132/353 (37%), Gaps = 7/353 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +         +++F++ +SL  +      V+   I+ +   P+     SK +  S 
Sbjct: 1   MEKDLKEYITPPVLLVLFLLGISLMIVSPVLNMVILGAILAYAIRPLARKITSKIKIRSV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + +   + ++ L I+    +     +    LV      N +   V   + +      +S
Sbjct: 61  SIFLAVILVMIPLVILIAYIISVISGVLSDVLVVNPSGFNLNLDTVINQMVNSLPADISS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +    S +    +  + +  +        L   + +  +  ++++F RD
Sbjct: 121 -------GIDTASIKSSLSGFIKDIGNVVLDYIVSLASKLLSISVDLFILFASIYYFIRD 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +    ++S        ++++    V +V++S F G  + ++  G++    Y L G   
Sbjct: 174 GDNCYDFVESFIPQESKDFFERTVNSVKEVLKSIFYGHFLTSLIIGIIAAVGYSLLGYSQ 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T I  +IP   P         + +    +    + +     L + D  +RP L
Sbjct: 234 GVFLGVLTGIFQLIPIFGPWPIYWTLAIVDLISGNYVRVVIVILFGFFLSLSDMYIRPAL 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 +  L    G + G    G++G  +GP+++ +   +     + + ++K
Sbjct: 294 SSHYADIHPLILLIGFLAGPLVYGIVGFILGPLILGITYAVLDNFRIELNKSK 346


>gi|282900348|ref|ZP_06308299.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194853|gb|EFA69799.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 376

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 114/324 (35%), Gaps = 13/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            +     +       ++ A ++ F           K+      +A++  +  + + +   
Sbjct: 20  ALSSIFNYFHSLIVILVGASVLAFLLNYPLIWME-KQGAKREQVAILVFLIALSILLALG 78

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L++        +     L       ++  
Sbjct: 79  VTLFPLALTQARQLVNRLPEWIDSGRSQLMILNE--------KAEMMGLPINLDAIVVQI 130

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                + +  I        ++ +   L  +  ++  F+  + G  + Q L       F  
Sbjct: 131 NDRVKSQLQAITAQVLNLAVVTVTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPSKFRE 190

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +    V    ++ F+   I++      L  ++    VP  +  G+   IMA+IP G 
Sbjct: 191 PFSR---TVRLSFQNFFITQLILSTCMASALIPSFLWLKVPYGLLFGLTIGIMALIPFGG 247

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   A++  L+   +I     +     I   I++  L P ++G    L  +     ++ 
Sbjct: 248 SV-GIAITTLLVSLQDISMGVRVLAAAVIVQQILENILAPRILGNFTGLNPVWVLISVLT 306

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G R  GLLG+ +      +I  I 
Sbjct: 307 GARVGGLLGVIVAVPFAVVIKTII 330


>gi|15607346|ref|NP_214719.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15839585|ref|NP_334622.1| hypothetical protein MT0215 [Mycobacterium tuberculosis CDC1551]
 gi|148659969|ref|YP_001281492.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra]
 gi|167968797|ref|ZP_02551074.1| putative conserved transmembrane protein [Mycobacterium
           tuberculosis H37Ra]
 gi|215406198|ref|ZP_03418379.1| putative transmembrane protein [Mycobacterium tuberculosis 02_1987]
 gi|215448484|ref|ZP_03435236.1| putative transmembrane protein [Mycobacterium tuberculosis T85]
 gi|218755942|ref|ZP_03534738.1| putative transmembrane protein [Mycobacterium tuberculosis GM 1503]
 gi|253797127|ref|YP_003030128.1| hypothetical protein TBMG_00206 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233592|ref|ZP_04926918.1| hypothetical protein TBCG_00203 [Mycobacterium tuberculosis C]
 gi|254366656|ref|ZP_04982700.1| conserved transmembrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254549144|ref|ZP_05139591.1| hypothetical protein Mtube_01551 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|289552457|ref|ZP_06441667.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289747972|ref|ZP_06507350.1| transmembrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289760308|ref|ZP_06519686.1| transmembrane protein [Mycobacterium tuberculosis T85]
 gi|289764321|ref|ZP_06523699.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|294994678|ref|ZP_06800369.1| transmembrane protein [Mycobacterium tuberculosis 210]
 gi|297632685|ref|ZP_06950465.1| transmembrane protein [Mycobacterium tuberculosis KZN 4207]
 gi|297729659|ref|ZP_06958777.1| transmembrane protein [Mycobacterium tuberculosis KZN R506]
 gi|306774295|ref|ZP_07412632.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|306779038|ref|ZP_07417375.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|306782826|ref|ZP_07421148.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|306787195|ref|ZP_07425517.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|306791750|ref|ZP_07430052.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|306795792|ref|ZP_07434094.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|306801789|ref|ZP_07438457.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|306806002|ref|ZP_07442670.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|306970396|ref|ZP_07483057.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|306974629|ref|ZP_07487290.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|307082338|ref|ZP_07491508.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|307082682|ref|ZP_07491795.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|313656985|ref|ZP_07813865.1| transmembrane protein [Mycobacterium tuberculosis KZN V2475]
 gi|8928458|sp|O53656|Y205_MYCTU RecName: Full=UPF0118 membrane protein Rv0205/MT0215
 gi|2909603|emb|CAA17327.1| PROBABLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium
           tuberculosis H37Rv]
 gi|13879700|gb|AAK44436.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
 gi|124603385|gb|EAY61660.1| hypothetical protein TBCG_00203 [Mycobacterium tuberculosis C]
 gi|134152168|gb|EBA44213.1| conserved transmembrane protein [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148504121|gb|ABQ71930.1| putative conserved transmembrane protein [Mycobacterium
           tuberculosis H37Ra]
 gi|253318630|gb|ACT23233.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
 gi|289437089|gb|EFD19582.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
 gi|289688500|gb|EFD55988.1| transmembrane protein [Mycobacterium tuberculosis 02_1987]
 gi|289711827|gb|EFD75843.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
 gi|289715872|gb|EFD79884.1| transmembrane protein [Mycobacterium tuberculosis T85]
 gi|308217128|gb|EFO76527.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
 gi|308327966|gb|EFP16817.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
 gi|308332346|gb|EFP21197.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
 gi|308336098|gb|EFP24949.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
 gi|308339729|gb|EFP28580.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
 gi|308343734|gb|EFP32585.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
 gi|308347455|gb|EFP36306.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
 gi|308351505|gb|EFP40356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
 gi|308352082|gb|EFP40933.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
 gi|308356032|gb|EFP44883.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
 gi|308359987|gb|EFP48838.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
 gi|308367553|gb|EFP56404.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
 gi|323717194|gb|EGB26403.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
 gi|326905960|gb|EGE52893.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
 gi|328456914|gb|AEB02337.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
          Length = 367

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 98/331 (29%), Gaps = 14/331 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    M  +L  L   +    PVL AL++     P      S+          +  +
Sbjct: 23  RFLVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPHAVAVTLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    L F+    +  +  LV++V  +                  W  E       
Sbjct: 82  SGFAVLGGILTFVVSQFIAGLPHLVTEVERSIDSARR------------WLIEGPAHLRG 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N    +   A        +   + + ++  L FF   G SI Q +
Sbjct: 130 EQIDNAGNAAIEALRNNQAKLTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +   R     +        ++A+ +   +G+   + GVP  + L  + 
Sbjct: 190 TKAFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLV 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A IP    +       +  L+   I  A            +    L+P ++G  + +
Sbjct: 250 FFGAFIPLIGAVVAGFLAVVVALLAKGIGYALITVGLLIAVNQLEAHLLQPLVMGRAVSI 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     +  G    G++G  +    +A  
Sbjct: 310 HPLAVVLAIAAGGVLAGVVGALLAVPTVAFF 340


>gi|238791876|ref|ZP_04635513.1| AI-2 transport protein tqsA [Yersinia intermedia ATCC 29909]
 gi|238728980|gb|EEQ20497.1| AI-2 transport protein tqsA [Yersinia intermedia ATCC 29909]
          Length = 356

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 107/343 (31%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      K +   T   V+   
Sbjct: 21  RLVTMLAMLVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKLLE-KIKIPRTLAIVLLVT 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L  +    L        + L     +  +    +  +           ++      
Sbjct: 80  IIILLMALLFSRLGSSLNEFARSLPQYRGMMLEKMRDLQEFAMRFNIEFSVDDIMKHVDP 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R          S+  +++ + F   +   +  ++
Sbjct: 140 ------------------STAMNFVTRLLSHLSGAMASMFLLLMTVVFMLFEVERLPYKM 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + ++  P     I +     +    +  TII+I  G+V+       GV      G++ 
Sbjct: 182 QLMFDN--PEQGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLA 239

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP     ++     I  L+     +A  +     +   I    + P ++G  + L
Sbjct: 240 FVLNYIPNIGSVLAAMPPIIQALLFNGFADAFAVTCGYILINLIGGNIIDPRMMGRGLGL 299

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  L+     +G +G+ +   L  +  ++ + +    K
Sbjct: 300 STLVVFLSLIFWGWLLGPIGMLLSVPLTIIAKIVLELTPDGYK 342


>gi|169830798|ref|YP_001716780.1| hypothetical protein Daud_0614 [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637642|gb|ACA59148.1| protein of unknown function UPF0118 [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 358

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 111/342 (32%), Gaps = 2/342 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + + ++     ++     P L AL+I     P       +         +     +
Sbjct: 18  LLVTLNLIVLFYIARYMLPILLPFLVALMISLLIEPAVRLLQERLRFPRPLAVIGVIFVL 77

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    L       + E+  L S +     +       L D    +         + + 
Sbjct: 78  LAVVGALLTAAALRLVAELGHLSSLLPYHVANFRRTFEGLLD--DAVIFYGRLPPAMVNY 135

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + S        +      +           + ++   +A +FF RD   + +    
Sbjct: 136 IDGLLASAVKSLEGFLRGALDASLGLLSTVPFMIVVLMITFVATYFFSRDNEKLREAWIR 195

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                + A    I R         F    ++      +  +   + GVP  V++G++T I
Sbjct: 196 AIPEPWGARSLLIVREGFGAFIRFFRAQFVLVSITTAITITGLLIIGVPYAVSIGIVTGI 255

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P   P +     I   +    ++           LF V  +L   +V   + +  L
Sbjct: 256 FDLLPILGPTTIFVPWIAWCVLTGSYSLALKLFVLYAILFTVRASLEAKVVSMNLGIHPL 315

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                +  G++ MG+LGL +GP+L+ ++    K    A + +
Sbjct: 316 AVLVAMYIGLKVMGILGLILGPILVVVVQGAIKAGKRAREAS 357


>gi|197106958|ref|YP_002132335.1| conserved predicted permease protein [Phenylobacterium zucineum
           HLK1]
 gi|196480378|gb|ACG79906.1| conserved predicted permease protein [Phenylobacterium zucineum
           HLK1]
          Length = 360

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 86/326 (26%), Gaps = 26/326 (7%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFLF 82
           L++L     P+  A+ +             +    S      +A V  + +F     F+ 
Sbjct: 2   LHWLSNILTPLALAMFLAVMIDGFARVLQHRLPGVSRRAATPLAVVLSVAIFGGAAFFVA 61

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                   +LV+     N         +           L                    
Sbjct: 62  DNAASFGAQLVTYTPKLNGLIARFAGMVGMDVPPTVTELLRQLDP--------------- 106

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWK 201
                   R+  +      D+  +  F+++ L F         ++  SL           
Sbjct: 107 -------ARYLGQIARGLQDFVSTAAFVLVYLGFILASRHGWERKTVSLFPTRDERQEAV 159

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                +   +       T+  +   +         G+ + V   ++  I + IP    I 
Sbjct: 160 NAFLRIRNGVEQYLWVQTVTGLMIAVASWIVMAAVGLDNAVFWAILIFIASYIPVVGGIV 219

Query: 262 FT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                    LL    ++ A  L          V   ++P + G  + +  +     L   
Sbjct: 220 AVAAPPIFALLQFDTLWQAIVLLAVLQGVTMFVGNVVQPRMQGRSLNMDPIVLLLALAFW 279

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
               GL G F+   L  ++ VI  + 
Sbjct: 280 TVIWGLAGAFLSTPLTVMLMVILAQF 305


>gi|53804969|ref|YP_113175.1| permease [Methylococcus capsulatus str. Bath]
 gi|53758730|gb|AAU93021.1| putative permease [Methylococcus capsulatus str. Bath]
          Length = 362

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 107/348 (30%), Gaps = 12/348 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  + N Q +   +++ +  + +  L     PV +A II +    +      +++     
Sbjct: 13  RRILPNAQAVSFAILLVVGFIVVVSLAKMLMPVFAAGIIAYLLDGLVE-IGERRKLPRLV 71

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             ++  +  + L +V  + L      +  +L+ +       G  +   L +        E
Sbjct: 72  SVIVVYLLFLALLLVVFIGLLPLLYQQTLQLIEQAPSWVNRGQVLIMELPERYPDYITQE 131

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +   ++  I     + T     +           +   +  I + + +FFF +D 
Sbjct: 132 QVNDLIGAIRAELISYGQSMLTYSYASLVSL--------ITVVVYFILVPLLVFFFLKDR 183

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I                 ++ + V   I +   G  +  +         + L G+   
Sbjct: 184 DRILGWFTQYLP-RDRNLSNRVWKEVDMQIGNYVRGKFVEIVILFAASFVTFSLMGLNYA 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPF 299
           + L V+  I  +IP       T   + +       +     L L  AI   +    L P 
Sbjct: 243 LLLAVLMGISVIIPYVGATLVTFPVMIVAFFQWGVSDDFWYLMLAYAIIQALDGVMLVPL 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L    + L  +     ++      G  G+F    L  L+  +      
Sbjct: 303 LFSEVVNLHPVAIIVAILFFGGWWGFWGVFFAIPLATLVKAVLSAWPR 350


>gi|87301132|ref|ZP_01083973.1| hypothetical protein WH5701_14641 [Synechococcus sp. WH 5701]
 gi|87284100|gb|EAQ76053.1| hypothetical protein WH5701_14641 [Synechococcus sp. WH 5701]
          Length = 347

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 102/322 (31%), Gaps = 28/322 (8%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            ++  + + +      ++A ++           + +         +I  ++ + +  + +
Sbjct: 29  AVVQLIDYFRAVLTVFIAAAVLAVLLDYPVRRLV-RLGCGRGLAILITVLAGLAVASLFV 87

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L +  + +   L++ +VL  Q          +        EL                
Sbjct: 88  AVLGFQLINQGSSLLNDLVLGLQRPDLPFHNYLNTIELSKVLELLRAS------------ 135

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                                        +F+++ + +   D  +   Q   L       
Sbjct: 136 -----------LGTGLGVIGGAFTNVFGGVFLLVIVVYMLVDNGATWSQALRLLPEDVRG 184

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +    V K +     G   + I   L     + L GV   + L ++  ++  IPG  
Sbjct: 185 RFDR---SVQKNVLGFLRGQITLMIFLSLASFLVFALLGVKFSLVLAIVVGVLDAIPGIG 241

Query: 259 P-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +     S  + +    + A  + +   +   I D  + P ++G  +++  +  FF L 
Sbjct: 242 ATLGVIVASGLVFLTQGQWLALQVVIASVVLQQIQDNLIHPRVMGRALEIRPVVLFFALF 301

Query: 318 GGVRTMGLLGLFIGPVLMALIA 339
            G R  GLLG+F+   +  +I 
Sbjct: 302 VGERLAGLLGVFLAIPVTGMIL 323


>gi|241518648|ref|YP_002979276.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240863061|gb|ACS60725.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 353

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 118/337 (35%), Gaps = 15/337 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P+     + ++  ++ L F + F  P++ + ++     PI      +   S     +I  
Sbjct: 9   PRWTAIGLFIYASILFLSFAREFLVPIVLSFLLALVFSPIRRFLDERGVPSVATSLIIVG 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  L I+    +              V    +    + + + +   GM  +       
Sbjct: 69  ALIAALAIILGAIIVP------------VSGYVESLPRIEQAIQEKLAGMSQALSGLFEA 116

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   +  + S                +   +         +F ++ L F    G  + ++
Sbjct: 117 SRRLTDFLRSHAANVQQVELRGNGLITSAALFVPALIAQTLFTLVLLLFLLASGDILHER 176

Query: 188 LDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           L  +   +       +IS  + + +    L +T I +  G V+ +  WL+G+P+ +  GV
Sbjct: 177 LVEILPTVQDKNRAVEISHDIERKLSRYLLTITTINVCLGGVIAALLWLSGMPNPLLFGV 236

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW--GAIELFIVDKTLRPFLVGGP 304
           +  I   +P   P+     +  + +  +      + +     + + I  + + P+ +G  
Sbjct: 237 LAFICNFVPYLGPLVSMTAACAVALISSSGVGFAVAIASLYLLVMTIEGQIITPYFIGRR 296

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++L  +  F  +        ++G+ +   L+  ++V 
Sbjct: 297 LRLNTVVVFVAISFWAWLWSIVGMLVAVPLLVTVSVF 333


>gi|148827485|ref|YP_001292238.1| hypothetical protein CGSHiGG_04490 [Haemophilus influenzae PittGG]
 gi|148718727|gb|ABQ99854.1| hypothetical protein CGSHiGG_04490 [Haemophilus influenzae PittGG]
          Length = 348

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 114/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     P+  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPMIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L  L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLAGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S       A  ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAAKEERHIDRVLQGVIGYLGIKSITSLLTGVGIFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGVGFGVAVGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|311087020|gb|ADP67100.1| putative inner membrane protein [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 360

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 72/341 (21%), Positives = 131/341 (38%), Gaps = 5/341 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+   +    I+ + ++S   +  F      A +I   +WP+            +   +I
Sbjct: 10  LSQSILSLIFIVSMGVISFLVIHPFILGFFWASMIVIATWPLMLKIQKILGGKRSLAVII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++ LFI+P+ FL    +     ++  +   N     +    +    G      +  
Sbjct: 70  MIIILLLLFIIPVFFLVNSLIATSIPIIHWLGSNNLELPELAWLQNIPLMGRKIFNSYQT 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+      I           +F        G+    + +  I M+      Y +G  IS
Sbjct: 130 LLNSDGGELIHKIRPYMGRATEFFIIQVRNCGL----FIIHSILMLFFSALLYWNGEKIS 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +      L     K I  +  + +R+  LG+ + A+ + L+ G    ++GVP    L 
Sbjct: 186 ISIHHFAYRLSEKNGKAILLLATQAVRAVALGVAVTALIQALLSGIGLLVSGVPYWALLM 245

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I     +I  G         I+L    +    T L +W     FI+D  LRPF +    
Sbjct: 246 IIIFFSCLIQLGPLPILIPSIIWLYWNDDTTWGTILLIWSCFV-FILDHILRPFFIRIGA 304

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP L T  G++GG+ T G++GLFIGPV++ +   +    I
Sbjct: 305 DLPILLTLSGVIGGLLTFGMIGLFIGPVVLVIFYRLTISWI 345


>gi|302867293|ref|YP_003835930.1| hypothetical protein Micau_2820 [Micromonospora aurantiaca ATCC
           27029]
 gi|302570152|gb|ADL46354.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 371

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/349 (11%), Positives = 107/349 (30%), Gaps = 15/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +   + L  ++  +      L A+       P+    + ++        ++  ++
Sbjct: 16  VIGLVLATGVGLALVWATRRVLVWGLVAVFFAVALKPLVDR-LERRVRRRALATLLVFLA 74

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              LF      +    + E+     +     +        L  +                
Sbjct: 75  AFALFAAVGALIVVPLVDEVGRFADRAPDIVREAQAGQGPLGRLL--------------D 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L   +E          +                +++ +++  +    +   I     
Sbjct: 121 RFHLLRYAEPGQLRRYGARLGDPTVGVVRSVAQAVAALVTVVVLAYLMVLEAPKIVAATL 180

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A  ++I R   +++     G  +I++  G +     +L GVP    + +  A
Sbjct: 181 RLTGDGAAARLRRIGRDSSRIVTGYLSGNLLISLICGGLTFVVLFLLGVPFAAVIALAVA 240

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP          +       +      + ++  +   + +  L+P ++G  ++L  
Sbjct: 241 VFDLIPLVGATLGALAAAGAAFLHSPTAGLVVLVFFVVYQQVENHLLQPVIMGRAVRLNP 300

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L     ++  V   GL+G  +      ++ V+ +E   A +E   + + 
Sbjct: 301 LTVLVSVLLSVELAGLVGALLAIPAAGIVQVLLREFAPAGREALPQPAD 349


>gi|156936358|ref|YP_001440274.1| hypothetical protein ESA_04258 [Cronobacter sakazakii ATCC BAA-894]
 gi|156534612|gb|ABU79438.1| hypothetical protein ESA_04258 [Cronobacter sakazakii ATCC BAA-894]
          Length = 337

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 110/331 (33%), Gaps = 22/331 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + +   + IIL  ++       P+L AL +     P+ + F+ +          +A   V
Sbjct: 2   LQKLAALVIILAGIHAAADMIVPLLLALFLAIVLNPLVTWFMRRGFRRP-----VAITIV 56

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + + ++ L  L         E V+ +   N+        L ++   M       + L   
Sbjct: 57  VFVMLIGLTLLLGVLAASFNEFVALMPKYNKELTRKLLHLQEMVPFMHLHLSPERMLQRM 116

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S K+++        +           M  +     +  +   L F   +       L  
Sbjct: 117 DSDKMMTFATTLMTQLSGAMASVVLLVMTVVFMLFEVRHVPYKLRFALSNPQLHIAGLHR 176

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                             K +       T+I++  G+++     L  +   +  GV+  +
Sbjct: 177 AL----------------KGVSHYLALKTLISLWTGVIIWLGLTLLDIQFALMWGVLGFL 220

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP     +S     I  L+   ++    + +  ++   I+   + P ++G  + +  
Sbjct: 221 LNYIPNIGAVLSAIPPMIQALLFNGVYEVVMVGVLFSLVHMILGNIVEPRMMGHRLGMST 280

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +  F  L+     +G +G+ +   L ++  +
Sbjct: 281 MVVFLSLLFWGWLLGPVGMLLSVPLTSVCKI 311


>gi|27376578|ref|NP_768107.1| hypothetical protein bll1467 [Bradyrhizobium japonicum USDA 110]
 gi|27349719|dbj|BAC46732.1| bll1467 [Bradyrhizobium japonicum USDA 110]
          Length = 382

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 111/347 (31%), Gaps = 18/347 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  +++  ++  LYF K FF PV+ A++ G    P  S    +    +    +I T   
Sbjct: 51  ALAGLLLIAVIGVLYFAKAFFLPVVMAVVAGTMLSPAASFLERRGVPRALGAVLIVTAVT 110

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  V  L           E  S++                        +         
Sbjct: 111 TVVAFVVALIAVP-----AMEWSSRLPELGAQLKEKLHVFDRPLALWKELQTMVGGSEGL 165

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            SL +    +++       P FA               F    + F           + +
Sbjct: 166 PSLPLPKAEWVQPTLEFLSPTFAEFLL-----------FFATLILFIASWRDLRRALIMN 214

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            G+        +I   +   + +  L +T+I IG G+  G    + G+P+   LG + A 
Sbjct: 215 FGDRDARLRTLRILNEIEVHLGNYLLTVTVINIGVGVATGIICAITGMPNPAGLGALAAA 274

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP   PI+   V I + +         L   L      F+    + P ++G  + L 
Sbjct: 275 LNFIPIIGPIAMFIVLIVVGLVAFPTLGGGLMAGLAFGGITFLEGHFVTPTIIGRRLSLN 334

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            L  F  L       G +G F+   L+ +  ++ +  +        +
Sbjct: 335 ALAVFIALAFWTWLWGPMGAFLSSPLLIVGLILKEHLLPENSPQLPQ 381


>gi|85711713|ref|ZP_01042770.1| Permease PerM [Idiomarina baltica OS145]
 gi|85694573|gb|EAQ32514.1| Permease PerM [Idiomarina baltica OS145]
          Length = 360

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 88/292 (30%), Gaps = 11/292 (3%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   +I     +C+  + L  L      +   L+ ++     +       L ++  
Sbjct: 63  GMGRLAATIIVMSLTICIATLCLFTLVPVVWQQSTTLIRELPDMLANLQVWLHKLPELFP 122

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            +      T+ +   +   +     + T+ +  +           +   + +I + + +F
Sbjct: 123 SVIDESQITELMLTVKRRVVGLGEQILTSSLTSLVNV--------MAMLVYLIVVPLLVF 174

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F  +D  ++      +          ++ + +   I +   G  +  I   +   + ++ 
Sbjct: 175 FMLKDRNTLLAHFSRILPT-NRRLITQVGQEMNLQIMNYIRGKALEVIVVAVTSFAVFFA 233

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVD 293
             +     L ++  +  +IP    +  T       L   G       + +   I   +  
Sbjct: 234 FDLRYTTLLSILVGLSVLIPYIGAVVVTIPVALVALFQFGATGPFIYVMIGYLIIQALDG 293

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             L P L    + L  +     ++      G  G+F    L +L+  +    
Sbjct: 294 NVLVPLLFSEAVSLNPVYIIAAVLIFGGIWGFWGVFFAIPLASLVKAVITAW 345


>gi|46204696|ref|ZP_00049603.2| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 279

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 67/202 (33%), Gaps = 1/202 (0%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            +   D I   A              +  +   FFF  DG SI   +  L          
Sbjct: 1   MSENQDSIVSGALGAATTIGHVLAGALIALFCTFFFLLDGRSIWSWVVGLLPLRARDRVH 60

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI- 260
           +  R     + +      ++A  + + +G           + LG++  + + IP    I 
Sbjct: 61  QAGRRGIVTLAAYTRTQILVAAVDAVGIGVGAAFFVPSLALPLGILVFVGSFIPIVGAIV 120

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           + +   + +L+      A  +     +   I    L+PFL+G  + L  +     +  G 
Sbjct: 121 TGSIAVLVVLVAQGWVQALVMLGIVLLVQQIEGHILQPFLMGHAVSLHPVAVLLVVAAGS 180

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              G++G      + A++  + 
Sbjct: 181 FAAGIVGALFAVPIAAVLNTVV 202


>gi|159906021|ref|YP_001549683.1| hypothetical protein MmarC6_1639 [Methanococcus maripaludis C6]
 gi|159887514|gb|ABX02451.1| protein of unknown function UPF0118 [Methanococcus maripaludis C6]
          Length = 334

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 116/334 (34%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R  I+F      Y L  F   +  A+ + + + P+Y     K   S         V 
Sbjct: 8   ILARGFIIFSFFALCYMLWPFIGIIALAVAVAYMTKPLYDVLKPKLGRSYGA------VF 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   ++P L L      ++                +     D         L       
Sbjct: 62  CLLGIVIPSLLLAILVAEDVIAF-------------LLSVDIDSIISKVTPILNDIGYLR 108

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               ++        +    +    +          + ++F+    F+F +DG  I     
Sbjct: 109 VDGPEVSKPVSDIWSVSKPLLDSLATQISAIPSLLMKLLFLSFMTFYFLKDGDKIKNSFM 168

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                      +     + K +++ F+G  + ++  G +    YWL G+P+ + LG ++ 
Sbjct: 169 LYVPKEKQKNAEIFVNEIHKALKTLFIGNAVTSLIVGFISIIGYWLIGIPNPITLGALSG 228

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKL 307
           I+ ++P     +    +++Y L+ G I     L  +G + L +  D  +RP ++     L
Sbjct: 229 ILNILPVVGGWTIYVPLTVYYLLTGEIVKGVLLGFFGIVFLSLAPDFAIRPRVISKDGDL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                    + G    G+ GL IGP+++A +  I
Sbjct: 289 HPALVLIAFLIGPLVFGIPGLAIGPIIVATVYAI 322


>gi|148242404|ref|YP_001227561.1| permease [Synechococcus sp. RCC307]
 gi|147850714|emb|CAK28208.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 346

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 106/337 (31%), Gaps = 19/337 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +  +   +V L+ L+     +  ++++      +  +  S+          ++ + V+
Sbjct: 16  VGFAALIAAVVLLWDLRFVLIDLFGSVVLAVAFCTLVRAVQSRLGWRRWPSLALSLLLVV 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L IV ++ L      + +EL+ ++  A Q    +                     S  Q
Sbjct: 76  VLVIVVVVALVPPFSAQFRELIEQLPQAAQALQQLI---------------GGDLSSAIQ 120

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S     E +   N    +   A  FG+  +     +   +              Q    +
Sbjct: 121 SNISNPEKWNLANSFSRVVELAGNFGIGLVQLVFVVAVAL----MLSVQPEDYRQVAVLM 176

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +     + + S  +G+ I ++  G +      L GV    A  ++  ++
Sbjct: 177 APSYLRRRIAGVLDSCGQALSSWMVGVLISSVAVGFMAFVGLSLLGVKLTTANALLAGML 236

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P       + + +    + +  +     +        + P ++   +KL    
Sbjct: 237 NVIPNVGPTLSVVFPMAVALLDTPWMSLAVLALYVVIQNFESYVITPSVMHHQVKLLPGL 296

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T           G  GL +   L   + V+ +E ++ 
Sbjct: 297 TLAAQGIFTVIFGFKGLLLALPLAVCLQVVVRELVVR 333


>gi|116513954|ref|YP_812860.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093269|gb|ABJ58422.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
 gi|325125615|gb|ADY84945.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 357

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 109/341 (31%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
              N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +
Sbjct: 8   RFKNNIHLRRATVLVMIILALYYVRAMMNTILLTFIFTYLILHLVRFVQGKFKHVSDKLI 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  + ++ L    L +     + ++ ++   V+   Q                  +++
Sbjct: 68  VALTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQT-----------------NDV 110

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   + +   + +    + +  +      FG + + + ++++              
Sbjct: 111 DWLMTQLHKHVSEKTISSQVKSSLTALTAALKGFGSVTMSFVMALVLSFFYTIELKEMQT 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S     F        R              +IAI    +      +  +P   
Sbjct: 171 FSQSFLKSDLFGWFFEDIAYFGRKFTNTFGVVLEAQFLIAICNTTLTIVCLAIMKMPQIF 230

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I +++P    I     +S+     G I +   + +  A+   +    L P  +
Sbjct: 231 ALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPKFM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G    G  GL +   +      I 
Sbjct: 291 SSKTELPIFYTFVALLFGEHFFGTWGLIVSVPIFTFFLDIL 331


>gi|113478156|ref|YP_724217.1| hypothetical protein Tery_4793 [Trichodesmium erythraeum IMS101]
 gi|110169204|gb|ABG53744.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 344

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/348 (10%), Positives = 104/348 (29%), Gaps = 12/348 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + +  + I+L   + ++     + +A+++      +   F            +       
Sbjct: 7   LGFFSLLIVLYIFWEIRQLLLLIFAAIVLATALNRLVQKFNRW-GLERNLAVIATLSLAA 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +V LL +    + + ++LV+ +             L      ++ +           
Sbjct: 66  LIMLVFLLLIVPPFISQFQKLVALIPDVFTEVRSQLIQLYQQRPDLFPAPP--------- 116

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +           +     +         L ++ + +    F  +  +  +    L
Sbjct: 117 --TATNMLVQTQKFGTQLFSNFLKIFSNTFTVFLQVLLVFVLTIMFLVNAQAYRRVGLLL 174

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I       + + F G+ I ++    + G    L  +   +   ++  ++
Sbjct: 175 FPSFYRRRADEIISKCEVALGNWFGGIVINSVFVATLSGIGLLLLQIDLVLTHALLAGLL 234

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P       I +      +    + +   I   I    L P ++   + L    
Sbjct: 235 NFIPNIGPTLSVVFPIMIAFLDTPWKIAAVGILYIIIQNIESYWLSPVVMAKQVSLLPAI 294

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           T    +      G+LGL +   L  +     +E++     +  + +S+
Sbjct: 295 TLGAQIFFTTFFGILGLILALPLTVVAKTWIEETLFKDILDPWQQTSS 342


>gi|284053786|ref|ZP_06383996.1| hypothetical protein AplaP_20212 [Arthrospira platensis str.
           Paraca]
          Length = 351

 Score =  103 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 113/343 (32%), Gaps = 18/343 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +   +  +  + + +      + A I  F               S T   V+   
Sbjct: 20  RYLLLFAFGWAFIQFIAYFETIIIVFVFAAIFAFLLNYPVQWLQKYT--SHTVAVVVVFS 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L I  L  L    + E+++ VS+        + +   +  +               
Sbjct: 78  TSLLLLIGLLATLGLAIVSELQQFVSQAPDLLDSFVNLVDQIETLLKNANIQVDLDFLQE 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +              +  +  F +      L   +  I +++  FF   +G  +    
Sbjct: 138 DLKQE------------VSNLFGFGTAAVGKILSGLVEFIIILVVTFFMLLNGEELWASF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S       +  +  +  +       F G  I+++  G      Y +   P  + L  + 
Sbjct: 186 QSFFP----SNIEDFTLSLRNNFLGFFRGRLILSVFFGFSAFFVYLILQAPYPLFLATLV 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IPG        +S  +++   I  +  + ++  +   I +  L P ++   + L 
Sbjct: 242 GVFDLIPGVGATIGIILSAIIVLPKGILISLQVIVYCVLLQQIEENILMPRIMQNSVNLN 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  FF L+ G R  G LGLF+   + A+I          +K+
Sbjct: 302 PVVIFFALLLGARIAGFLGLFLSIPIAAVIVGFVNIKNAEVKQ 344


>gi|238757692|ref|ZP_04618876.1| AI-2 transport protein tqsA [Yersinia aldovae ATCC 35236]
 gi|238704197|gb|EEP96730.1| AI-2 transport protein tqsA [Yersinia aldovae ATCC 35236]
          Length = 329

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/323 (13%), Positives = 103/323 (31%), Gaps = 22/323 (6%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             +        P L A+ +     P+       K         +A V ++ + I+ +  L
Sbjct: 2   AGIKAASPIVVPFLLAIFLAIVLNPLVKLLERIKIPR-----TLAIVLLVTIIILLMALL 56

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
           F      + E    V       +   R L +               +   +++   +  +
Sbjct: 57  FSRLGTSLNEFARSVPQYRGMMLEKMRELQE--------------FAMRFNIEFSVDDLM 102

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
           K         F +R          +   +++ + F   +   +  ++  + ++  P    
Sbjct: 103 KHVDPSIAMNFVTRLIGHLSGAMANTFLLLMTVVFMLFEVERLPYKVQLMFDN--PEKGN 160

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I +     +    +  T+I+I  G+V+       GV      G++  ++  IP    + 
Sbjct: 161 AILKRALNGVTHYLVIKTVISIVTGIVIWLFLAAMGVRFAFLWGLLAFVLNYIPNIGSVL 220

Query: 262 FTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                I   L+     +A  +     +   I    + P ++G  + L  L  F  L+   
Sbjct: 221 AAVPPIIQALLFNGFADAFAVTGGYVLINLIGGNIIDPRMMGRGLGLSTLVVFLSLIFWG 280

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
             +G +G+ +   L  +  +  +
Sbjct: 281 WLLGPIGMLLSVPLTIIAKIALE 303


>gi|238927813|ref|ZP_04659573.1| possible permease [Selenomonas flueggei ATCC 43531]
 gi|238884360|gb|EEQ47998.1| possible permease [Selenomonas flueggei ATCC 43531]
          Length = 342

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 121/343 (35%), Gaps = 18/343 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+  ++   +L S +F + F   V  +L++     P+  +   ++       +  A 
Sbjct: 7   RTSIILAIVFAALLSSFWFFQDFAFIVFLSLLLQLLLQPVVDAMEQRR-IPRGIASAGAI 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L +V L  L    +  ++  V+++    Q    +P                    
Sbjct: 66  LLFLLLVLVLLSVLSRSVVPSLQRFVTELPSIGQGLQQMP-----------------LLT 108

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                 ++ S      +    + R +  F +  +   +  + +I   F+  +DG +I + 
Sbjct: 109 EMDLQQEMESFLDKLRSVGAELLRASLSFLLAAVGKIMDFVIIIFVSFYLLKDGKTIKRW 168

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L  +        +   +   +R       ++ I  GL++   + L G+P      ++
Sbjct: 169 LAGLFPYGSRGRVLNLFDRLLHALRIYVCSQLVMCIITGLIVFLYFVLMGLPYGSVFALL 228

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + I   +P   P + +A+   +             L+      I    + P LVG  + L
Sbjct: 229 SGISEFVPVLGPTAASALGTIMTASAAHDLTVQTALFYLALTQINHNIVYPALVGKSLHL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +    G+V G   +G  G+F+    M ++ ++  +     K
Sbjct: 289 HPVAVILGVVFGGEILGAAGMFLAVPFMVIVKIVVTDIYHEQK 331


>gi|301058702|ref|ZP_07199703.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
 gi|300447266|gb|EFK11030.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
          Length = 370

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/301 (21%), Positives = 128/301 (42%), Gaps = 6/301 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++ I  + L  ++ F   +  A +      P+Y  F  +        ++   +
Sbjct: 8   RFVLILLVLAISALFLSMIRDFLMALFLAALSSAMVHPLYKRFERRFGGRRGPASITTLL 67

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++PL+ L    + +  ++   V    QH +  P  LS++   +   E    H++
Sbjct: 68  LMVILVLIPLVGLLGIVVGQAIKVGESVTPWIQHQVAQPGALSELLQKLPFYE----HIA 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + +       L      F     S F M  + +       +  +FFF  DG  + Q++
Sbjct: 124 PYREVIFQKAGALVGTVSKFFINSLSSFTMGTVSFLFMFFLFLYTMFFFLMDGDKLLQKI 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 L     +++ +    V R+T  G  +I I +G + G A W+ G+PS V  G I 
Sbjct: 184 LYYLP-LEDQDEQRLLKRFTSVTRATLKGTAVIGIIQGGLAGLALWVVGIPSAVFWGAIM 242

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A++++IPG    + +  V I L+  G+      L L+  + +  +D  LRP LVG   ++
Sbjct: 243 AVLSVIPGIGTGLVWGPVGIVLIAGGHYGKGIGLILFCGVVVGSIDNFLRPRLVGRDTQM 302

Query: 308 P 308
            
Sbjct: 303 H 303


>gi|332173123|gb|AEE22377.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 360

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 112/333 (33%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + ++L  +        P L ++ I  +  PI +     +         ++ V
Sbjct: 10  KVLLILASLVVVLAGIKAASAIVVPFLLSIFIAMSCSPIINWANQYRIPR-----AVSVV 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++    L       M +    +    +  +    ++              + LS
Sbjct: 65  LVILLIVILGFMLAGLVGQSMNDFSENLPKYRKQLVEQFSFVIGRLNDFNIQINKNQLLS 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +                ++      +  G +  ++ L ++ ++  LF        I   L
Sbjct: 125 YLD----------PGAAMNMATSLLTSLGGVLTNFLLILLIVVFMLFEAESFPRKIHIAL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D       P    +        +++     T++++G GLV+G   +  GV  ++   ++ 
Sbjct: 175 D------DPNMKMRQIDKFLLSVKNYLAIKTLVSLGTGLVIGLWLYFLGVDHYLLWAMMA 228

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    I       +  L++     A    L   +   ++   + P  +G  + L
Sbjct: 229 FLLNYIPNIGSILAAIPAVLLALVQLGPGIAGLTALGFVVTNTVMGNIIEPRYMGRGLGL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             L  F  L+     +G +G+ +   L  ++ +
Sbjct: 289 STLVVFLSLIFWGWLLGTVGMLLSVPLTMIVKI 321


>gi|76787648|ref|YP_329808.1| hypothetical protein SAK_1187 [Streptococcus agalactiae A909]
 gi|76562705|gb|ABA45289.1| membrane protein, putative [Streptococcus agalactiae A909]
          Length = 377

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 106/331 (32%), Gaps = 13/331 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKE-----------ESSTFLAVIATVSVMCLFIVPLL 79
             P L    I +    + S +                   +   +++  + + L +    
Sbjct: 39  IFPFLMGAGIAYIINIVMSVYERLYVKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLFS 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  +  L+     A    +        I   +         +S           
Sbjct: 99  IVIPDLISSLSSLLVIDTGALAKLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQILK 158

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + +   + +    S      L+  +S IF I  L    + G   +  +D+         
Sbjct: 159 QVLSVLTNLLTS-VSSIAATLLNVFVSFIFSIYVLANKEQLGRQFNLLIDTYLG-STGKT 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+IP    
Sbjct: 217 FHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALIPVVGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L+   ++  A    L+  +        + P +VGG I LP +     +  G
Sbjct: 277 YIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLMAITIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               G+LG+ +   + A I  I K+ I+  +
Sbjct: 337 GALWGILGMLLAVPVAATIYQIVKDHIIKRQ 367


>gi|222445339|ref|ZP_03607854.1| hypothetical protein METSMIALI_00967 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434904|gb|EEE42069.1| hypothetical protein METSMIALI_00967 [Methanobrevibacter smithii
           DSM 2375]
          Length = 348

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/353 (15%), Positives = 132/353 (37%), Gaps = 7/353 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +         +++F++ +SL  +      V+   I+ +   P+     SK +  S 
Sbjct: 1   MEKDLKEYITPPVLLVLFLLGISLMIVSPVLNMVILGAILAYAIRPLARKITSKIKIRSV 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + +   + ++ L I+    +     +    LV      N +   V   + +      +S
Sbjct: 61  SIFLAVILVMIPLVILIAYIISVISGVLSDVLVVNPSGFNLNLDTVINQMVNSLPADISS 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      +    S +    +  + +  +        L   + +  +  ++++F RD
Sbjct: 121 -------GIDTASIKSSLSGFIKDIGNVVLDYIVSLASKLLSISVDLFILFASIYYFIRD 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G +    ++S        ++++    V +V++S F G  + ++  G++    Y L G   
Sbjct: 174 GDNCYDFVESFIPQESKDFFERTVNSVKEVLKSIFYGHFLTSLIIGIIAAVGYSLLGYSQ 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V LGV+T I  +IP   P         + +    +    + +     L + D  +RP L
Sbjct: 234 GVFLGVLTGIFQLIPIFGPWPIYWTLAIIDLISGNYVRVVIVILFGFFLSLSDMYIRPAL 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 +  L    G + G    G++G  +GP+++ +   +     + + ++K
Sbjct: 294 SSHYADIHPLILLIGFLAGPLVYGIVGFILGPLILGITYAVLDNFRIELNKSK 346


>gi|153811071|ref|ZP_01963739.1| hypothetical protein RUMOBE_01462 [Ruminococcus obeum ATCC 29174]
 gi|149832959|gb|EDM88042.1| hypothetical protein RUMOBE_01462 [Ruminococcus obeum ATCC 29174]
          Length = 273

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 89/268 (33%), Gaps = 1/268 (0%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQSLKIL 136
           +  +       M  L+  +V          R    +    M   +    +        I 
Sbjct: 1   MFGVIPQLTRTMGTLMMSIVDFIPQMQSWIREFSHNNQEIMKLVDQVQFNPDQAIKWGIS 60

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  N ++               + ++  F    LF   +    I + + +      
Sbjct: 61  LLGNGAGNMMNTTMSAVGSIVSGLATFFIAFSFACYVLFQKEKLHVQIRKVVFAFLPKKK 120

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + KI  +  +   +   G  + A+  G +      + G+P  + +GV+ A  A+IP 
Sbjct: 121 ADAFLKICSLTYRTFANFLAGQCLEAVILGCMFVVILSILGMPYALLIGVLIAFTALIPI 180

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                  AV  +L+   N   A    +   +   I    + P +VG  + LP +     +
Sbjct: 181 FGAFIGCAVGSFLIFMVNPKQAILFIIVFLVLQQIEGNLIYPHVVGESVGLPSIWVLAAV 240

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             G   MG++G+ +   L+++   I+++
Sbjct: 241 TIGGNLMGIVGMLVFIPLLSVFYTIFRD 268


>gi|326563941|gb|EGE14191.1| hypothetical protein E9O_07758 [Moraxella catarrhalis 12P80B1]
          Length = 385

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 103/342 (30%), Gaps = 3/342 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES---STFLAVIAT 67
           I   + + ++L+S Y+L   +  V +++++      +                    I  
Sbjct: 10  IFMTVAVVLMLLSFYYLIHVWLIVFASILMAVWLLSLVEYLTLIPWVGQYLKKLPHGILL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             V+   +  L  L      E+   +  + L                     +       
Sbjct: 70  TMVLMGLVGVLSTLAALFGHELALQLENLKLLVPQAFEYMNQYLTQYLQTHPAVYEWLAG 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +     T   D    +   +    +    +++ + I   F         + 
Sbjct: 130 LEWARELRDNPQQFLTRFSDGAMAYLPTYLGGMVSGMGTLVVITIIGLFLAISPSVYRRS 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++         + +     + ++   LG  ++    G+  G A WL G+P  +ALG I
Sbjct: 190 FVAMVPKDSRDKAEYLLDRSYRSMQQWLLGQLVVMAFVGIATGIALWLMGIPFALALGFI 249

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++  +P   P       + L +  +      + L   +   +    + P +    + L
Sbjct: 250 AFLLDFVPVLGPWLSAIPILLLTLIVSPKMLLWVALMIVVVQQLESYVISPIVQNRMVDL 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P +      V      G+LG+ +   LM ++ V  +   +  
Sbjct: 310 PPVALLLSQVIMGSITGILGIALATPLMVMVIVWVQVLYIKF 351


>gi|322411655|gb|EFY02563.1| hypothetical membrane spanning protein [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
          Length = 375

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 110/338 (32%), Gaps = 13/338 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P L      +    + S++               +       ++A ++   L    +  
Sbjct: 40  LPFLYGAAGAYIVNIVMSAYEKAYVYAFKGSHLVLKLKRGICMLLAYLTFFILITWIISI 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L      + +  +        +   +       K      S        
Sbjct: 100 VIPDLIASISALTKFDTPSIKEVVNQLEHNKLLARVIKYIGGDAKLTQTITSYSQQLLKQ 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                 + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 160 FIGVLTN-ILTSVTVIASAIINLFISFVFSLYVLANKESLCRQGNTLVDTYTG-KYAQSI 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++       F+  T+ A+  G +  +  +L  +P    +GV+ A  A+IP     
Sbjct: 218 HYLVDLLHHRFHGFFVSQTLEAMILGTLTTTGMFLLQLPFAGTIGVLVAFTALIPVVGAS 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 278 IGAAIGFVLIMTQSMSQAIVFIVFLIILQQIEGNFIYPRVVGGSIGLPAMWVLMAITIGA 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++G+ I   L A +  + K++I   +  ++K  S
Sbjct: 338 SLRGIVGMIIAVPLAATLYQVIKDNIQRKQAIQKKQVS 375


>gi|229492836|ref|ZP_04386634.1| hypothetical protein RHOER0001_4143 [Rhodococcus erythropolis
           SK121]
 gi|229320276|gb|EEN86099.1| hypothetical protein RHOER0001_4143 [Rhodococcus erythropolis
           SK121]
          Length = 382

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 108/334 (32%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++      + +  +    G   PV  AL++     PI      +          +  + 
Sbjct: 33  VLLGTAATVVAVGGMKVFGGILGPVFLALVLTIAVQPIQDWSQRRGWPK-----WVGMLG 87

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +    + LL L    ++   +L + +   ++    +                    L+ 
Sbjct: 88  SLVTVYLILLGLAASLIVSTAQLATILPQYSEEMTNLLN-------------EGRDKLAD 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   ++ L +  +  +           L     ++F++  L F   DG SI  +L 
Sbjct: 135 FGVSTEQIQSTLSSVDLTKVVGVLESGLEGLLGILSDLVFILALLLFMAFDGMSIRSRLH 194

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L                    R   +  T+  +   ++ G A WL G+   V   +++ 
Sbjct: 195 VL--SEQRPEISYALSTFAAGTRKYLVVSTVFGLIVAVLDGGALWLMGIQLPVLWALLSF 252

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    +        L L++G  +    + +  ++  F++   ++P  VG  + L 
Sbjct: 253 ITNYIPNIGFVIGVIPPALLGLLQGGPWLMLWVIVVYSVINFVIQSIIQPKFVGDAVGLS 312

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   L  L+  + 
Sbjct: 313 VTMTFLSLVFWSWVLGALGALLAIPLSLLVKAVL 346


>gi|88608019|ref|YP_506086.1| PerM family permease [Neorickettsia sennetsu str. Miyayama]
 gi|88600188|gb|ABD45656.1| permease, PerM family [Neorickettsia sennetsu str. Miyayama]
          Length = 327

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 104/325 (32%), Gaps = 11/325 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
                  + I+ +      +   +    S    +++    +  L I+           ++
Sbjct: 1   MLFAFAFSFILAYFLNRSTTKLAA-LIGSRGIASLLVVAFLSILVILVFSLAIPLLYHQL 59

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              +        +     +        + +  L +       S        L       I
Sbjct: 60  ILFLKGAPQLIAYIENSIK--------ISSPGLHSFLEERGMSSLFEYILSLVPQLSTKI 111

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            +      ++  +  + +IF  + LF+  +D   ++  +  +        +     ++  
Sbjct: 112 TQHLWNSTLVLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRTAFSNQVTLMDA 171

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I    LG   I+   G++     + AG+P +  +GV T ++ +IP    I+    S  +
Sbjct: 172 SISGYVLGQMKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHLV 231

Query: 270 L--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                 +I +   + L       I    L P L+   + L  L   F +  G    GL G
Sbjct: 232 ALSRASSILDVLPITLIFIFCGAIEGLFLSPKLLSKSVNLHPLWVIFSMTVGGMLCGLAG 291

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
           + +   + A +A   +  I   K++
Sbjct: 292 ILLAVPVAATVAGFVRLGISYYKDS 316


>gi|150402189|ref|YP_001329483.1| hypothetical protein MmarC7_0262 [Methanococcus maripaludis C7]
 gi|150033219|gb|ABR65332.1| protein of unknown function UPF0118 [Methanococcus maripaludis C7]
          Length = 334

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/334 (17%), Positives = 125/334 (37%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R  I+F      Y L  F   +  A+ + + + P+Y     K     T+ A+I  + 
Sbjct: 8   ILARGFIIFSFFALSYMLWPFIGIIALAVAVAYMTKPLYDVLRPKFG--KTYGAIICLLG 65

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   ++ ++ +    +  +  L   +        P+   +  +             +  
Sbjct: 66  IVIPSLLLVILVAEDVVTFLLSL--DIENIISKVTPILNDMGYLRVDGPEVSKPVSDIW- 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         +    +   A+          + ++F+    F+F +DG  +     
Sbjct: 123 --------------SLSKPLLDSAATQISAIPSLLMKLLFLSFMTFYFLKDGDRMQDSFM 168

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                      K     + K +++ F+G  + ++  G +    YWL G+P+ + LG ++ 
Sbjct: 169 LYVPTEKKENAKIFLNEIHKALKTLFIGNAVTSVIVGFISIIGYWLIGIPNPITLGALSG 228

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKL 307
           I+ ++P     +    ++IY L+ G I     L L+G I L +  D  +RP ++     L
Sbjct: 229 ILNILPVVGGWTIYVPLTIYYLLTGEIVKGILLGLFGIIFLSLAPDFAIRPRVISKDGDL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                    + G    G+ GL IGP+++A +  I
Sbjct: 289 HPAFVLIAFLIGPLVFGIPGLAIGPIIVATVYAI 322


>gi|270293100|ref|ZP_06199311.1| conserved hypothetical protein [Streptococcus sp. M143]
 gi|270279079|gb|EFA24925.1| conserved hypothetical protein [Streptococcus sp. M143]
          Length = 362

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 110/352 (31%), Gaps = 13/352 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFL 62
             +  +     +     L    + ++   +I F                           
Sbjct: 17  VALVILNASSFISGAISLFDVISTLIYGAVIAFVLNVPMKKIEQYLVKLKVKAELRRPIA 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+  ++++ + I  L+ +       + +L + +         +      +    + ++ 
Sbjct: 77  MVLVFLALILIVIALLVLVLPTLAQTISQLGTVLSTVLTQLEKL------LGSSEFVTKD 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +      +  S +      +  +           ++  L I+F  + L        
Sbjct: 131 MLSTIVSGIQGQSSSISQALIGFLSGLTSNIGNIFSSLMNAFLIIVFTFLFLSSKEHLAA 190

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+ L              I ++  +      +   I A+  G+++   Y + G+P  V
Sbjct: 191 MTSRLLKVFLPEKVVIKLTYIGQVALETYDQFLMSQLIEAVIIGVMIAVGYSVFGIPYGV 250

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             G+   +++ IP   P+    V    +   +   A    L   +   I    + P +VG
Sbjct: 251 MTGIFAGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVG 310

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             I LP + T      G    GLLG+     + A+I  + KE ++A +   +
Sbjct: 311 QSIGLPAIFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQLD 362


>gi|89054705|ref|YP_510156.1| hypothetical protein Jann_2214 [Jannaschia sp. CCS1]
 gi|88864254|gb|ABD55131.1| protein of unknown function UPF0118 [Jannaschia sp. CCS1]
          Length = 374

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 103/329 (31%), Gaps = 14/329 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++L +L     F  PV++A +  F                    A   T     + 
Sbjct: 30  IFCLLLLQALVSGSDFLVPVIAAFLGYFVLNRPRRWLAKLGVIPVVSAAFFTTALTAAIV 89

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++ +            + +  +    +               +  +    + +   Q   
Sbjct: 90  VLLV-----QLSSPAAQFLEDLPSLIEEIKEKLDAAGGPLESINQAADAAEEIIADQEAD 144

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            ++   +   G+      A+    +   +   I F +I LFF    G     +     ++
Sbjct: 145 TVAVEVVSQTGV------AATIFSLAPGFLSRIGFALILLFFLVASGDMFLTKTVQSFDN 198

Query: 195 LFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I   +   +     G+TII  G G+ +G A  L G+P  +  G +   +  
Sbjct: 199 FSDKRRAVEILHRIEDRLGYYLGGITIINAGLGVAIGLAMQLWGLPGAILFGFMAFGLNY 258

Query: 254 IPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P    +     A ++  +     + A  +F        +  + + P ++   +KL    
Sbjct: 259 VPFLGGLMGATIAAAVAFVSLDATWAAAGVFASYVALTSVEGQLVTPMVISRRMKLNTTV 318

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            F  +        ++G+ +   ++ +  +
Sbjct: 319 VFLSVAFFAWIWSVMGMVVALPILIVTKI 347


>gi|33861484|ref|NP_893045.1| hypothetical protein PMM0927 [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634061|emb|CAE19386.1| conserved hypothetical protein [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 347

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 116/346 (33%), Gaps = 3/346 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N     ++ ++ I  + ++ L+ F   ++ +L+I      +     +  +       +I
Sbjct: 1   MNRSFYFKFSVVIISFLLVWTLRDFILLIICSLVISNVVSNLCYQIQTILKLPRFVSLLI 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +  +     + +    + E  E++  +         +     +    +   +   +
Sbjct: 61  VLVGISFMIFAISIIVLPPFIREFNEILIDIPNGLSRVNELVNSNLNKFNDLIYGKESER 120

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGF 182
            ++    +  +            I         +  +     + +IF+++  F    +  
Sbjct: 121 IVNIFDLVNDVVPIPDGATIAKAIQESFINIINLAGNLGSGFIRVIFVLVVSFMISIEPK 180

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +  + +  +   ++   ++ I       + +    + I +I  GL+      +  V   V
Sbjct: 181 AYKEGVLFMIPKVYRNKFRIILDKCNIALTNWTFSIVISSISVGLLSLIVLSILDVKYVV 240

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +  +I  I+ +IP   P+      I + +  N +    +F    +   I    + P ++ 
Sbjct: 241 SNAIIAMILNIIPNIGPVLSGIFPISIALLDNFWKPVAVFGAYIVIQNIESYIIMPSILK 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               L    T     G     G LGL +   ++ +  V+ KE I  
Sbjct: 301 KKTNLLPGLTLISQFGFTFIFGPLGLVLSLPIVVVTQVLIKELIND 346


>gi|298481866|ref|ZP_07000056.1| conserved hypothetical protein [Bacteroides sp. D22]
 gi|298272088|gb|EFI13659.1| conserved hypothetical protein [Bacteroides sp. D22]
          Length = 341

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 139/351 (39%), Gaps = 20/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL I           + K++   +  A++ T 
Sbjct: 9   KYSLIVIILFMGIIIFRQITPFLGGLLGALTIYILVRGQMRYLVEKRKLKRSLSALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F++PL    +  + +++++             V  ++ +  G             
Sbjct: 69  ETIFVFLIPLGLTVWMVVNKLQDINLDPQTYIAPIQQVAEFIKEKTGYDVL--------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         T  +  +PR             +++  MI  L+F    G  +   +
Sbjct: 120 ---------GKDTLTFIVSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAYV 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T
Sbjct: 171 NDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLT 229

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L       
Sbjct: 230 CFATIIPMVGTALVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMADT 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L T FG+V G+   G +G+  GP+L+AL  +          + +  + S
Sbjct: 290 HPLITIFGVVIGLPLFGFMGVIFGPLLLALFFLFVDMFKKEYLDLRNNLPS 340


>gi|291570815|dbj|BAI93087.1| hypothetical protein [Arthrospira platensis NIES-39]
          Length = 351

 Score =  103 bits (257), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 112/343 (32%), Gaps = 18/343 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++ +   +  +  + + +      + A I  F               S T   V+   
Sbjct: 20  RYLLLFAFGWAFIQFIAYFETIIIVFVFAAIFAFLLNYPVQWLQKYT--SHTVAVVVVFS 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + L I  L  L    + E+++ V++        + +   +  +               
Sbjct: 78  TSLLLLIGLLATLGLAIVSELQQFVTQAPDLLDSFVNLLDQIETLLKNANIRVNLDFLQE 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +              +  +  F +      L   +  I +++  FF   +G  +    
Sbjct: 138 DLKQE------------VSNLFGFGTAAVGKILSGLVEFIIILVVTFFMLLNGEQLWASF 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S          +  +  +       F G  I+++  G      Y +   P  + L  + 
Sbjct: 186 QSFFPS----NIEDFTLSLRNNFLGFFRGRLILSVFFGFSAFFVYLILQAPYPLFLATLV 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  +IPG        +S  +++   I  +  + ++  +   I +  L P ++   + L 
Sbjct: 242 GVFDLIPGVGATIGIILSAIIVLPKGILISLQVIVYCVLLQQIEENILMPRIMQNSVNLN 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  FF L+ G R  G LGLF+   + A+I          +K+
Sbjct: 302 PVVIFFALLLGARIAGFLGLFLSIPIAAVIVGFVNIKNAEVKQ 344


>gi|312144391|ref|YP_003995837.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
 gi|311905042|gb|ADQ15483.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
          Length = 352

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 120/325 (36%), Gaps = 8/325 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L     P+L ++ + +   P+      K +   T   +I+ ++   +  + +       
Sbjct: 36  VLSFVLLPLLFSIFLYYLLRPLVIILEKKIKI-RTIAVIISFLAAASIITLIIYLGGNII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             + +EL     L     + +   + D                   S        L T  
Sbjct: 95  YEQSRELGGSYELIYSSIVEIFENIRDFINIERGLIDDFNLRERLISYTDSIIMRLSTYN 154

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I    +  G+I L        +   LF+  +D   I Q+   +         + +++
Sbjct: 155 YMGIFSSLTNIGLIIL-------LIPFVLFYLLKDDKEIYQKTIEMIPGSKRKQIEVLAQ 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K++        ++++    V+   + +  + S + L +I  I ++IP   P      
Sbjct: 208 DIDKLLSDFITSQLLVSLFTAFVMLIGFLIIRLASPLVLALIVLITSLIPIIGPAIGILP 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++++ +  +I  A  + +   I  ++    +RP + G  + +  L   F ++ GV   GL
Sbjct: 268 ALFIALTESIITALLVIIIFIIAQYLEGNLIRPLIQGKSMDIHPLVVLFVVLTGVYLFGL 327

Query: 326 LGLFIGPVLMALIAVIWKESIMAIK 350
           +G  I   L A++ +I++E I+  K
Sbjct: 328 IGALISVPLYAVLRLIYQERILKKK 352


>gi|260424640|ref|ZP_05778952.1| putative permease [Dialister invisus DSM 15470]
 gi|260402661|gb|EEW96208.1| putative permease [Dialister invisus DSM 15470]
          Length = 351

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 117/345 (33%), Gaps = 14/345 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE------ESSTFLAVI 65
           MR  I    ++        F P   +LI+     P+                      +I
Sbjct: 10  MRVSITLFFILLALSAPIIFFPFGISLILSILLTPLAQKLYKWINMTGIKNIPYDIPIII 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           +    + +  +  + +F   + E++     +             L               
Sbjct: 70  SFGIFIGIIYLIAIHIFVPFITELRAFTRSIPATFSALQSAIPELEAAYHLSLLPAEAQG 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++            L    +  I  FAS          + +I +    F+  + G + S
Sbjct: 130 FIAKMIQEIGEYTLRLAQFSLSAIFSFASTV--------IELIVVPFITFYMMKKGRTFS 181

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +   L    + A+ K + + +  V+++   G  ++++    ++    W+  +P  + +G
Sbjct: 182 NKFAELFPERYHAHIKNLFKEIHFVLKAYIHGQLLLSVLMAFLVFIGMWIMDIPYPLVIG 241

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++ M+P   PI      I L +         + ++  +   +    + P L+G  I
Sbjct: 242 LLAGVVEMVPIIGPIIGAVPPILLGLLQGSSVMIQVIIFYVVVQQLDSHFIMPKLMGSII 301

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++  +    G++ G    G+LG+ I    +A++ ++ +      +
Sbjct: 302 EVHPVAIIAGVLIGGSLKGILGMMIAVPAVAVLQILLRHMWYYDR 346


>gi|260584716|ref|ZP_05852462.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633]
 gi|260157739|gb|EEW92809.1| conserved hypothetical protein [Granulicatella elegans ATCC 700633]
          Length = 362

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/348 (13%), Positives = 109/348 (31%), Gaps = 13/348 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-------ESSTFL 62
             +  +     +     L    + ++   +I F                           
Sbjct: 17  VALVILNASSFISGAISLFDVISTLIYGAVIAFVLNVPMKKIEQYLVKLKVKAELRRPIA 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+  ++++ + I  L+ +       + +L + +         +      +    + ++ 
Sbjct: 77  MVLVFLALILIVIALLVLVLPTLAQTISQLGTVLSTVLTQLGKL------LGSSEFVTKD 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +      +  S +      +  +           ++  L I+F  + L        
Sbjct: 131 MLSTIVSGIQGQSSSISQALIGFLSGLTSNIGNIFSSLMNAFLIIVFTFLFLSSKEHLAA 190

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+ L              I ++  +      +   I A+  G+++   Y + G+P  V
Sbjct: 191 MTSRLLKVFLPEKVVIKLTYIGQVALETYDQFLMSQLIEAVIIGVMIAVGYSVFGIPYGV 250

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             G+   +++ IP   P+    V    +   +   A    L   +   I    + P +VG
Sbjct: 251 MTGIFAGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVG 310

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             I LP L T      G    GLLG+     + A+I  + KE ++A +
Sbjct: 311 QSIGLPALFTLAAASIGGNLFGLLGMIFFTPVFAVIYRLVKEFVVAKE 358


>gi|320352586|ref|YP_004193925.1| hypothetical protein Despr_0453 [Desulfobulbus propionicus DSM
           2032]
 gi|320121088|gb|ADW16634.1| protein of unknown function UPF0118 [Desulfobulbus propionicus DSM
           2032]
          Length = 360

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 118/335 (35%), Gaps = 4/335 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  F+  +  A  +     P YS   SK        A +    +     +PL++     
Sbjct: 27  VLWPFWNQLFVAFFLASIFHPAYSRLSSKT--RPWVAAALTCTLITLCVFLPLMYCIKSI 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E+  ++      +   +      +          L    ++   +      T L T  
Sbjct: 85  SAEIPAVIQLGRRTDIFALLQQTLQNSTLIQRTGELLADFGINFEVANIPELMTRLLTTA 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  R  S +    + +      +I+ ++F   +   ++  L  L   L  A  + +  
Sbjct: 145 GLFASRQVSTWATDIMRFFFDFCILIVCIYFLLIEYHRLTAFLLKLSP-LPEAQNRLLID 203

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTA 264
               +  +  +G  +  + +G++ G  +   G+ S V  GV+  ++A +P     +    
Sbjct: 204 KFSSIAGTILIGNGLSGLIQGVLGGIFFAAMGLVSPVLWGVVMGVLAFLPILGVGLVLLP 263

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++   +KG  + A    ++       ++   +P  VG   +LP +     ++GG+   G
Sbjct: 264 TTLIFFLKGKFWQAVVTLVFYLFLTVFIEYMFKPKFVGAQAQLPPILVLLSIIGGMSISG 323

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LG+  GP+ +     +    +   +   +   SN
Sbjct: 324 VLGIIYGPLAVTAFLTLSDMYVREYQPYLDSRGSN 358


>gi|307151174|ref|YP_003886558.1| hypothetical protein Cyan7822_1280 [Cyanothece sp. PCC 7822]
 gi|306981402|gb|ADN13283.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 370

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 114/329 (34%), Gaps = 13/329 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  +++ + + +L+      ++A ++ F            +  S  +   +  +  +
Sbjct: 20  VAFLNGWLLFLLIGYLEPLVTIFITATLLAFLLDFPIRLLE-LRGISRVWAVTLVFLIAL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +  L L    + ++ +L++ +      G      L              + +    
Sbjct: 79  VILAILALVLIPLILQQLSDLIAVLPQWIDTGTENIDNLRKWAIAQRLPININQVIGQIA 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    L T G++F+                +I+F+++   F    G +I   + S 
Sbjct: 139 EKLTTVVQSLSTQGLNFLLGAIGSI--------FNILFVLVLTVFLVFTGQNIWDGIFSW 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +  ++  ++       F    I+A    L     + +  VP  V  GV   + 
Sbjct: 191 IP---EPWNVELRNLIRDKFERYFASQAILAGILSLSQTVVFLILQVPYAVLFGVTIGLT 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++IP  +  +   +   +L   N      + +   I   I D+ + P L+GG   L  + 
Sbjct: 248 SLIPYASAFT-ILLVSIILSLENWVLGLKVLIAAIIVGQINDQVITPRLMGGITGLNPVW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
               L  G +  G+LGL +   L ++I  
Sbjct: 307 LILALFIGGKFAGILGLLLAVPLASVIKS 335


>gi|84622072|ref|YP_449444.1| transport protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366012|dbj|BAE67170.1| transport protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 368

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 109/336 (32%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +    +  +L+  +    P++ A+       PI                    +  +
Sbjct: 31  MVVLATLAVGYTLWAAQTIILPIMLAVFFALIGNPILRGLRKLYIPR--------FLGAL 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + L       +            A QH   +   + ++   +  +    ++ +   
Sbjct: 83  LILCLGLAGTVTLAVQLAGPAAEWAQQAPQHMQQIAHDVRNLTKPVMQANQAAENFARAA 142

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +      +    +D   +   R   +          +++  FFF   G S+ +   +L
Sbjct: 143 GGEGQRGVQIVRTQMDDPYKALVRTPKLAASVLA----VVLLTFFFMVYGESLQRHAIAL 198

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + 
Sbjct: 199 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLKIPLPEAILWGTVV 258

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 259 GLLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L    GL+      G++GL +   L+  I ++ 
Sbjct: 319 ISPLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVL 354


>gi|298243575|ref|ZP_06967382.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
 gi|297556629|gb|EFH90493.1| protein of unknown function UPF0118 [Ktedonobacter racemifer DSM
           44963]
          Length = 381

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 108/337 (32%), Gaps = 19/337 (5%)

Query: 18  FIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
             I++  +           +  A +  F   P+                ++  + V+  F
Sbjct: 39  AFIILVFWLASHITKALLMLAIAALFAFALAPLVKLLQR--IMPRIVAILVVYLIVLSAF 96

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +         + +  +L+  +    +     P  L    G    +             +
Sbjct: 97  SLLGYITLRATITQTHDLLRYMQSLTERHGGQPTQLERSLGNFGITRAQINEGRQFLLTR 156

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                       +   R A  F   FL++ +  + + I   +   DG  + Q L      
Sbjct: 157 -----------GEEFTRDAIPFLRSFLEFLIDTVIVAILSIYLLIDGTRVIQWLRRNTPQ 205

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY-WLAGVPSHVALGVITAIMAM 253
              A +  +   + +V+     G   +A+   +++G    ++  +P    LG++  IMA 
Sbjct: 206 AARANF--LLDTLQRVVGGYIRGQFTLALLISVLVGLGMGFIFHLPYAFLLGILAFIMAF 263

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP        AV I + +  +   A  + ++      I  + + P +VG  + L  + + 
Sbjct: 264 IPVLGTFISGAVCILIALTQSWVTALLVLVYFVFIHVIEGEVVGPRIVGKSVGLHPIVSL 323

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F LV G    G+ G      +  ++  I        +
Sbjct: 324 FALVAGGELFGIWGTLFASPIAGVLQTIIIVLWSEWR 360


>gi|124025473|ref|YP_001014589.1| permease [Prochlorococcus marinus str. NATL1A]
 gi|123960541|gb|ABM75324.1| Predicted permease [Prochlorococcus marinus str. NATL1A]
          Length = 358

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 113/343 (32%), Gaps = 3/343 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +    + I ++ L+ LK       +++II      I        +       +I  
Sbjct: 3   QTSFLSITALIISVLILWSLKEIVILFFASIIIAMALCTITGKIRDFLQIPRWGSLIITI 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +S++ +  + ++ +      E +EL++++  A      +   +      +   +      
Sbjct: 63  ISILLISSISIVIIIPQFTSEFQELINQIPSAASKLWELSIKIFLNFSELVYKDNIPNLA 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSI 184
                   LS      +    +    ++   +  +     + +IF++           S 
Sbjct: 123 DKTILTNKLSMIPDGASLASTVTDSITKLLSLVSNVGIGIIQLIFILSVGLMITLQPQSY 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +    L    +    + I       + S   G+ + +I   L+     +L G+   +A 
Sbjct: 183 REVAILLVPSFYRRRARTILLRCGNALSSWMSGVLLSSICVALLAAIGLYLLGIKLVIAN 242

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +I  ++ +IP   P   T   + + +    + +  +     +   I    + P ++   
Sbjct: 243 ALIAGVLNIIPNVGPTISTIFPLSVALLDTPWKSFAVLGLYVVIQNIESYVITPSIMHKQ 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +KL    T           G LGL +   +  +I V  KE I+
Sbjct: 303 VKLLPGLTITAQFIFTIIFGPLGLLLAIPMAVVIQVFVKEIII 345


>gi|77360222|ref|YP_339797.1| integral membrane transport protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875133|emb|CAI86354.1| conserved protein of unknown function ; putative integral membrane
           transport protein [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 325

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 108/345 (31%), Gaps = 27/345 (7%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           L  +        P + A  I     P+   F   +         IA + V+ + +   + 
Sbjct: 2   LAGIKSASAIIIPFILAAFIAIICSPLIKFFARYRIPK-----GIAVIFVVLIIVGLGVS 56

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L       + +   ++            WL DI           + LS            
Sbjct: 57  LGGLVGQSVNDFSQQLPQFKVKLKEEFVWLVDIASQYNILINKDQILSMFD--------- 107

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +   A+           ++  +I+ + F   +G S++ ++ S      P   
Sbjct: 108 -----PGKMVDVATNMLTGLGGVMANMFLIILTVVFMLFEGPSLNHKIHSALND--PDKK 160

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            K        I S     T++++G G++  S  W   V   V  GV+  +   IP    I
Sbjct: 161 MKQINRFLDSINSYLAIKTLVSLGTGILAASLLWFLDVDYFVLWGVLAFMFNYIPNIGSI 220

Query: 261 SF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                  +  LI      A  +     +   ++   + P  +G  + L  L  F  L+  
Sbjct: 221 IAAVPAVLLALITQGPLVAGLVGAGYLVINTVMGNIVEPKFLGKGLGLSTLVVFLSLIFW 280

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE-----SIMAIKENKEKISSN 359
              +G +G+ +   L  ++ +  +       +  +    E+++ N
Sbjct: 281 GWLLGSVGMLLSVPLTMIVKIGLEASDEGRWVATLLGTGEELTEN 325


>gi|260771830|ref|ZP_05880748.1| hypothetical protein VIB_000268 [Vibrio metschnikovii CIP 69.14]
 gi|260613122|gb|EEX38323.1| hypothetical protein VIB_000268 [Vibrio metschnikovii CIP 69.14]
          Length = 285

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 107/275 (38%), Gaps = 2/275 (0%)

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +P + +F   + +       +      G I        I   +  +  +           
Sbjct: 2   IPSILVFSAIVQQGARFAQTLYHWGNEGGIQTALSHPLIIKTLTFTNQYLPFHEVTPQQI 61

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                   T+    +   +++         ++   M+  LFF  RD   I   L  +   
Sbjct: 62  AQKTAQFATSFGSSLVAISAKIVGDVTHLVMNFFLMLFVLFFLLRDHDKIINVLRHILP- 120

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L  +   K+   + +V +S  +G  + AI +G+  G A WL G+P      ++     + 
Sbjct: 121 LSRSQEDKLLHEIQQVSKSAIMGSFLTAIAQGVAGGLAMWLVGLPGLFWGTMMGFASFIP 180

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
             G  + +   ++YLL+ G+   A  L +W    +  +D  LRP L+ G   +  L  FF
Sbjct: 181 LIGTALIWIPATLYLLVIGDTAWALFLLIWSIAIVGSIDNLLRPLLMQGSAGMNTLMIFF 240

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L+GG++  GL+GL  GP++ A+  V++       
Sbjct: 241 SLLGGIQLFGLIGLIYGPLIFAITIVLFNLYEEEF 275


>gi|330508908|ref|YP_004385336.1| hypothetical protein MCON_3236 [Methanosaeta concilii GP-6]
 gi|328929716|gb|AEB69518.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 408

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 123/362 (33%), Gaps = 21/362 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +   +++ + + ++Y  K F AP+L +    F   P+YS             A ++ +
Sbjct: 8   NLLASAVLLIVFISTVYVTKAFIAPLLLSFFFAFVLLPVYSRIYCLTG-RKNLSAFMSLL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG----------------IPVPRWLSD 112
            V+  F++ L         E   L S      Q                  + +   +S+
Sbjct: 67  LVVLFFMIFLSSALNAIATETSGLFSSQEDIVQSIDIYITQKTEESFDTLHVVLNNLVSE 126

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                    L        ++ +    + L           A+ F              I+
Sbjct: 127 STADETVERLREMVRPFIEAPRDRILSDLLPQIAFEATNLATGFISELPVLMSQFFVAIM 186

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
             ++    G S  +    +               + K+  + F    + ++  GL+    
Sbjct: 187 ITYYLLIGGSSAVKGFLLILPE--RELMNYFMGELNKIYNNLFNVYLLTSLITGLLAAIG 244

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAI-ELF 290
           + L GV      G+ TAI A++P   P I F  + IY L+ GN  +   LF++  I    
Sbjct: 245 FALFGVSYPFLWGLTTAIFALLPMIGPPIIFVPICIYFLLIGNYLSGIGLFIYSLIFINT 304

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I +  +RP L     K+    T       +  +G LG  IGP+L   +   ++  +  +K
Sbjct: 305 IPENVIRPKLASQGAKIHPSITLLAFAAPIFVVGFLGFIIGPLLYGFLLAAFRTRVYMLK 364

Query: 351 EN 352
           E 
Sbjct: 365 EE 366


>gi|297623501|ref|YP_003704935.1| hypothetical protein Trad_1269 [Truepera radiovictrix DSM 17093]
 gi|297164681|gb|ADI14392.1| protein of unknown function UPF0118 [Truepera radiovictrix DSM
           17093]
          Length = 376

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 118/336 (35%), Gaps = 4/336 (1%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             ++L+ LY  +G +     A  I +    +  +   ++     +  ++  + ++ +   
Sbjct: 21  AALVLLFLYRSRGAWLLFFLAYGIAYLLNAVVGALERRRVPR--WGGMVLALLLLLVLFT 78

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              F+    + +M E V++V             L+++   +              +    
Sbjct: 79  AASFVVAGFIQQMSEFVARVPDLGAQLSAWYAALNELQRFVPPPLSAFAEGLGRGAQSGA 138

Query: 137 SETFLKTNGIDF--IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            E+ L   G     +   A       +   +  + ++    F   D    ++ L      
Sbjct: 139 LESALSALGESAVRLSTGAFFALTGLVGGVVQAVVLLFLTAFLLLDFDGFNRALLRAVPE 198

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            + A   +++    + +   F G  +++    L + +   L GVP  + +  +  +  ++
Sbjct: 199 RYRAQVLELAAKADRSVGGYFQGRLVVSFIVALCIWAGMVLLGVPLALGIAFLAGVFNLV 258

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   PI     +  L +     +     L      F+    L P ++   +++  L    
Sbjct: 259 PFLGPIIAFIPAGLLALTLGWVHLLATALIFTAANFLDGNVLSPVILSRTVQVHPLVVLL 318

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +V G    G+LG+ +G  + A + +++++  +  +
Sbjct: 319 SVVVGASAFGVLGVVLGVPVAAFLKLLYEDYYLTSR 354


>gi|134102038|ref|YP_001107699.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
 gi|133914661|emb|CAM04774.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338]
          Length = 385

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 89/312 (28%), Gaps = 14/312 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + +    L +L     PV+ AL++     P  +    K          +   
Sbjct: 14  RVLVVAAAVGLAGYVLTYLAAVAMPVVIALLLAALLGPFSNWLTGK-GAPRALATALVVC 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +      L  +    + ++  L ++V    + G    R            EL      
Sbjct: 73  VGLISVTGVLALVVGTVVADLPRLQAQVSNTLESGEAWLRLGPLRLDQRQLDELVNDA-- 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T         I        +   +     + ++  L FF  DG  I   L
Sbjct: 131 ----------TATLQTHQGGIISGVLSTAVTSGEVLGGALLVLFTLIFFLYDGDRIWNFL 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R     +         +A  + + +G +  L GVP   AL  + 
Sbjct: 181 LRGFPLGSRDRVDLAGRSGFDALTGYVRATAAVACMDAIGVGVSAALIGVPLAPALAALV 240

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P     I+ T   +  L+    + A  +     +   +    L+P L+G    L
Sbjct: 241 FLGAFVPYLGILITGTLAVLVCLVTVGFWPAVLMAAIVIVVTQLEGHVLQPLLLGRASHL 300

Query: 308 PFLPTFFGLVGG 319
             L     +  G
Sbjct: 301 HPLAVVLSISVG 312


>gi|77408721|ref|ZP_00785453.1| membrane protein, putative [Streptococcus agalactiae COH1]
 gi|77413019|ref|ZP_00789221.1| putative membrane protein [Streptococcus agalactiae 515]
 gi|77160917|gb|EAO72026.1| putative membrane protein [Streptococcus agalactiae 515]
 gi|77172696|gb|EAO75833.1| membrane protein, putative [Streptococcus agalactiae COH1]
 gi|319745113|gb|EFV97438.1| permease [Streptococcus agalactiae ATCC 13813]
          Length = 377

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 106/331 (32%), Gaps = 13/331 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLL 79
             P L    I +    + S +                   +   +++  + + L +    
Sbjct: 39  IFPFLMGAGIAYIINIVMSVYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLFS 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  +  L+     A    +        I   +         +S           
Sbjct: 99  IVIPDLISSLSSLLVIDTGALAKLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQILK 158

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + +   + +    S      L+  +S IF I  L    + G   +  +D+         
Sbjct: 159 QVLSVLTNLLTS-VSSIAATLLNVFVSFIFSIYVLANKEQLGRQFNLLIDTYLG-STGKT 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+IP    
Sbjct: 217 FHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALIPVVGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L+   ++  A    L+  +        + P +VGG I LP +     +  G
Sbjct: 277 YIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLMAITIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               G+LG+ +   + A I  I K+ I+  +
Sbjct: 337 GALWGILGMLLAVPVAATIYQIVKDHIIKRQ 367


>gi|189183980|ref|YP_001937765.1| permease protein PerM [Orientia tsutsugamushi str. Ikeda]
 gi|189180751|dbj|BAG40531.1| permease protein PerM [Orientia tsutsugamushi str. Ikeda]
          Length = 350

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/338 (18%), Positives = 119/338 (35%), Gaps = 9/338 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                I+ ++I  IIL   YFL     P L+A ++ +   PI      K + S   +  I
Sbjct: 4   KTNNYILYFLITAIILSLCYFLINIATPFLAAAVLAYILNPIVEILQIKLKLSRNLIVSI 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V  + + IV  L L      +   L++ + +            +       +     K
Sbjct: 64  VFVVFLTILIVAALLLMPIIYKQAALLIANIPVYKATIQNFIESNNSTNNLENSINHNIK 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           H+        +         I  I   A ++ +  +   ++  F  I LF+F RD   I 
Sbjct: 124 HILTEIINSWIL-------IITHILNHAWQYTITTIHSVVTAAFTGILLFYFLRDWKLII 176

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               S+       Y  KI   +   + +   G   I +   +    +  L  +   + +G
Sbjct: 177 NSCKSILPQQSILYINKIVNSMNTSLLAYAQGQLNICLILSIFYSISLLLINLDFSLTIG 236

Query: 246 VITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + +  + +IP    I  +  A+       G  F    + +   I   +    L P L+G 
Sbjct: 237 LFSGTIIIIPLIGTIISTSIALITCFSQFGLSFKLLYVIMIYIISHILETHFLTPKLIGS 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + L  +  +F ++     +G  G+F+   L  +I ++
Sbjct: 297 KVGLHPIWIYFAVLTCSYYLGFTGIFLAIPLAIIIKIV 334


>gi|104773948|ref|YP_618928.1| hypothetical protein Ldb0899 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423029|emb|CAI97720.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 357

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 109/341 (31%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
              N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +
Sbjct: 8   RFKNNIHLRRATVLVMIILALYYVRAMMNTILLTFIFTYLILHLVRFVQGKFKHVSDKLI 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  + ++ L    L +     + ++ ++   V+   Q                  +++
Sbjct: 68  VALTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQT-----------------NDV 110

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   + +   + +    + +  +      FG + + + ++++              
Sbjct: 111 GWLMTQLHKHVSEKTISSQVKSSLTALTAALKGFGSVTMSFVMALVLSFFYTIELKEMQT 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S     F        R              +IAI    +      +  +P   
Sbjct: 171 FSQSFLKSDLFGWFFEDIAYFGRKFTNTFGVVLEAQFLIAICNTTLTIVCLAIMKMPQIF 230

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I +++P    I     +S+     G I +   + +  A+   +    L P  +
Sbjct: 231 ALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPKFM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G    G  GL +   +      I 
Sbjct: 291 SSKTELPIFYTFVALLFGEHFFGTWGLIVSVPIFTFFLDIL 331


>gi|319649707|ref|ZP_08003863.1| hypothetical protein HMPREF1013_00467 [Bacillus sp. 2_A_57_CT2]
 gi|317398869|gb|EFV79551.1| hypothetical protein HMPREF1013_00467 [Bacillus sp. 2_A_57_CT2]
          Length = 352

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 97/317 (30%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
              YF+     P++ A I      P+     +K + +     +I  +  +    +   F+
Sbjct: 21  AVFYFILPVSVPLIVAFITALILEPVVKLLQNKIKINRRVSVLITFLGFVLFIGLSGYFI 80

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + E  +LV    +                                  ++       
Sbjct: 81  TTKVITEAIKLVENAPMYINEITKAWLRAEADFSNAAKDLPKDLVDEISNQIQSFLNKTK 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                               +Y +S I  +IALF F  D   + + L +          K
Sbjct: 141 NDLVAYVNIDSLKALLTNIPNYLVSFIVYLIALFLFLIDLPRLRKGLYNHLTEKTADKVK 200

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++  +  V    F    ++++   +V             + + +I  I+  IP    I 
Sbjct: 201 FMTSRLSYVGFGFFKAQFLVSVIIFIVSLIGLLFINPEMALIMSIIIWIIDFIPIIGSIV 260

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                    +              A  L I+ +T+ P ++G  I L  L T   +  G++
Sbjct: 261 ILGPWALFHLLTGDLAMGTQLAILAAVLLIIRRTVEPKVMGTHIGLSPLATLIAMYLGLK 320

Query: 322 TMGLLGLFIGPVLMALI 338
            +G+LG  IGP+L+   
Sbjct: 321 LIGILGFIIGPLLVIAF 337


>gi|329848057|ref|ZP_08263085.1| hypothetical protein ABI_11260 [Asticcacaulis biprosthecum C19]
 gi|328843120|gb|EGF92689.1| hypothetical protein ABI_11260 [Asticcacaulis biprosthecum C19]
          Length = 359

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 111/346 (32%), Gaps = 19/346 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q +   ++     +  Y L   +  +  A++I      I    +   + ++    + A +
Sbjct: 12  QRVGFVVLAVAATLLAYNLMNLWILIFGAIVIAVVLRGIAEPLMKVCKLNAPLAVLAAVL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +            + +++ L  ++ +A                            +
Sbjct: 72  LVVGVVATTFYLFGRDIVAQVQILSKQLPVAWAELQTRLE-------------------A 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S ++ ++          +     +     L    + +  +IA              +
Sbjct: 113 AGLSDEVQAQIDAAGQQAGGVASKIPQLAGGLLSGVANFLVALIAGILLAIHPGQYRDGI 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    + A  K    +  K ++  FLG  +  I  G++ G   W+ GVPS +ALG+++
Sbjct: 173 VFLFPDSYKARVKDSLNVAGKALQLWFLGQFVSMIVVGVMTGVGLWVMGVPSALALGMMS 232

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +   +P   P+      + L     +       +       +    + P +      +P
Sbjct: 233 GLAQFVPIVGPVISAGPGLLLAGAAGLDKFLYALVLYVGVSQLEANLITPAVQNRISSVP 292

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            + T F +VG    +G +G+     L  ++  +          +K+
Sbjct: 293 MVLTLFAVVGFAGLLGPVGVLYAMPLTVVLYTLVMRFYKGEDVSKK 338


>gi|307293285|ref|ZP_07573131.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
 gi|306881351|gb|EFN12567.1| protein of unknown function UPF0118 [Sphingobium chlorophenolicum
           L-1]
          Length = 369

 Score =  103 bits (256), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/333 (15%), Positives = 112/333 (33%), Gaps = 11/333 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
               ++  +  +L     FF P+ +AL++     P       +   S    A+ A +  +
Sbjct: 9   AGIGLVLAMPFALREGAEFFLPLTAALVVAIALVPFLEWMERRSVPSP-LAALTAVIVFL 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    L+ +        + L  ++     +  P+  + S +    +  E      + P 
Sbjct: 68  LVANTALVLIVVPAADWFRLLPERLPKIQNNLAPLIDFYSQLQR--FVDETVQMLATGPV 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    +      + + F    A    +  +   L      I  FF         + ++S 
Sbjct: 126 AAAQTAAVDAPRSLLQFAATSAPSAIIQMVFALL------IIYFFLAGWTKLRRRTINSR 179

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++ + V     +  L +  I +  GL +  A WL G+PS +  G I A++
Sbjct: 180 ESFDGAMAVARVIQNVVDATSAYVLTIATINLCLGLAVAFALWLIGMPSPLMWGGIVALL 239

Query: 252 AMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             +P   P+   A+      ++  +++ A            +    + P ++G  + +  
Sbjct: 240 NFVPYFGPMLAAALLGLGGLMVFDDVWKALLPAALQIGFHLVEANFVTPTILGRRLTMNP 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L     L       G  G  +G  L+ +I  + 
Sbjct: 300 LLILVSLTFWGWVWGTPGALLGVPLLIIIQTVV 332


>gi|239993472|ref|ZP_04713996.1| hypothetical protein AmacA2_03147 [Alteromonas macleodii ATCC
           27126]
          Length = 346

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 100/344 (29%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++    + +++  +        P   ++ I     PI             
Sbjct: 3   MELRSPTAKILIVLACLVVVMAGIKAASTIMVPFFLSIFIAIACSPIIRWTSKFGVPK-- 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               ++   V+ L +V    L       M E    +            W+          
Sbjct: 61  ---WLSITFVILLIVVFGFLLAGLVGQSMTEFRENLPEYRSKLDTEFAWVVSKLAEFNIH 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  SH      +S      +G+  +        +  +        +   L     D
Sbjct: 118 INRELIASHLDPATAMSVATNFISGMGGVLSNLFLILLTVIFMLFEADSIPRRLHIALAD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                + +D                     + S     T++++G GL++G   ++ GV  
Sbjct: 178 PGMKLKHIDRFIR----------------SVNSYLAIKTVVSLGTGLIIGIWLYVMGVDH 221

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+  ++  IP    I       +   ++    +A    L   +   I+   + P 
Sbjct: 222 FMLWAVLAFMLNFIPNIGSIIAAVPAVLIAFVQLGPASAGFAALGFVLVNTIMGNMVEPR 281

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+G  + L  L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 282 LMGKGMGLSTLVVFLSLIFWGWLLGTVGMLLSVPLTMVVKIALE 325


>gi|162455888|ref|YP_001618255.1| hypothetical protein sce7606 [Sorangium cellulosum 'So ce 56']
 gi|161166470|emb|CAN97775.1| hypothetical protein sce7606 [Sorangium cellulosum 'So ce 56']
          Length = 393

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 57/339 (16%), Positives = 117/339 (34%), Gaps = 8/339 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M++   + + +   +   +I +  + +KG   PVL   ++     P+      +      
Sbjct: 18  MQQDFQSDRWLSFALRAGLIALFFWMVKGLLVPVLLGGLVALLVSPLQRRLAPRLGRFRQ 77

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F   I+TV V+ L  +PL  +       +    ++    +     V   L+D       +
Sbjct: 78  FAPAISTVGVIILVCIPLAVIIIEASASISRFFAR--DWSNTIERVEGLLNDGRITGLLN 135

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                             + L       I  FA           +     I+ L++  RD
Sbjct: 136 RAGLS-----GDDVRTYVSNLFERVGSSIAGFAGGMVAAVPQTIVDAFLFIVGLYYLLRD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  + + L +            +   +   +    LG+   A  +G +   A +   VP 
Sbjct: 191 GGLLLRWLLTQSPFRNEETDV-LFASIQDTVHGAVLGLLATAAVQGTLTTIALFACKVPG 249

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG++  +++++P       T  +   L       A       A+ + + D  +RP++
Sbjct: 250 AFLLGLLATLLSLVPMIGTTPVTLGAAVYLFVVGRIGAGIGMCAAAVLIGLSDNVIRPWV 309

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                 +  L     + GG+   G  G+FIGPV+ A++ 
Sbjct: 310 QSSHGGMHPLIALLAIFGGLELFGAAGIFIGPVVAAIVL 348


>gi|146338157|ref|YP_001203205.1| putative permease [Bradyrhizobium sp. ORS278]
 gi|146190963|emb|CAL74968.1| putative permease [Bradyrhizobium sp. ORS278]
          Length = 372

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 112/341 (32%), Gaps = 16/341 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +  +   LY  +GFF P++ A ++G    P  +     +        +I    
Sbjct: 38  IALVILTVICVTSVLYVARGFFLPIVMAFVVGTMLSPAANLLERYRVPRGIGAVLIVI-- 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                   L F+       + +  +++                        +        
Sbjct: 96  ---AVAAGLAFIIGLISAPVLDWTNRLPELAAQLKAKLHVFDKPLALWHEMQ-------- 144

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             ++   S     T  +  +         +   +   ++F    + F           + 
Sbjct: 145 -TAIGGGSAQASNTLELPKLDWVQPTIEFLTPTFTEFMLFFATLVLFIASWRDLRRTLIM 203

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           + G+H       +I   +   + +  + +T+I  G G+  G A  + G+P+   LG + A
Sbjct: 204 TFGDHEARLRTLRILNELELHLGNYLMTVTLINTGVGVATGLACAVTGMPNPAGLGALAA 263

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKL 307
            +  +P   PI+   V + + +      +  +   L  A+  F+    + P ++G  + L
Sbjct: 264 TLNFVPIIGPIAMFMVLVLVGLIAFPTLSGGMAAPLIFAVITFMEGHFVTPTIIGRRLAL 323

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             L  F  L       G +G F+   L+ +  ++ +  +  
Sbjct: 324 NALAVFIALAFWTWLWGPMGAFLASPLLIVGLIVKEHLLPD 364


>gi|149280421|ref|ZP_01886541.1| permease [Pedobacter sp. BAL39]
 gi|149228835|gb|EDM34234.1| permease [Pedobacter sp. BAL39]
          Length = 379

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 125/344 (36%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E  L  +  +  + + +I + L   +    P++ A  I     P++     KK     
Sbjct: 1   MTEMPLTVKRSLELLGIVLIGLVLVIGQDIIMPIIMAFFISIVLLPVFRFLRRKKVPE-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A +  + L ++ +  + ++   ++  LV+       +     + +S   G +   
Sbjct: 59  ---ALAIILPILLLVIFVGLIIFFFSSQIALLVADFPQIKSNVNVHLKSVSAWIGRISDF 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +     +    L            +               + +  + I ++     
Sbjct: 116 STTKQINFINEKSDDLLRMAGSAASGAAVT---------LSSIFVFVGLLPIYIYLMLFY 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + + +    +       K+       +I++  +G+ I      ++LG    L G+  
Sbjct: 167 KDILLRFIFMWFKPDHHPKVKEAIYETEAIIKNYLVGLLIQVTYMTILLGGILLLIGIKH 226

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI--FNATCLFLWGAIELFIVDKTLRP 298
            + +GVI AI+ +IP    +    + + L +  +   +    +    A   F+ +  L P
Sbjct: 227 ALLIGVIFAILNLIPYVGALIGNIIGVLLTLTSSTELWPVITVLAVIAGVQFLDNNILMP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +VG  +K+  L    G++ G    G+ G+F+   ++A++ +I+
Sbjct: 287 RIVGSKVKINALFAILGVIIGGSIAGVSGMFLSMPIIAVLKIIF 330


>gi|148825378|ref|YP_001290131.1| hypothetical protein CGSHiEE_01310 [Haemophilus influenzae PittEE]
 gi|229846428|ref|ZP_04466536.1| hypothetical protein CGSHi7P49H1_07145 [Haemophilus influenzae
           7P49H1]
 gi|148715538|gb|ABQ97748.1| hypothetical protein CGSHiEE_01310 [Haemophilus influenzae PittEE]
 gi|229810521|gb|EEP46239.1| hypothetical protein CGSHi7P49H1_07145 [Haemophilus influenzae
           7P49H1]
          Length = 348

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 114/344 (33%), Gaps = 16/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  +   + ++    + IIL  +        P L +L I     PI  +   ++     
Sbjct: 1   MQNNLNLHRTLLGIAAVIIILAGVKLAAEIVVPFLLSLFIAIICSPIIKAMTQRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     ++ L    L+ L      E  + + +  +     +     L          
Sbjct: 59  WLAITLLFVLISLVFFFLVGLINSTAREFTQSIPQYKVLLSQRVSDLTGL---------- 108

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L   +L    S + + E F  +  ++F+ R    F  +  +  + ++ +I  L      
Sbjct: 109 -LQRFNLPFTLSRETIQENFDPSIIMNFVSRVLLNFSGVVSNVFVLVLVVIFMLAEAPTM 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  + S          ++    V + +       +I ++  G+ +       GV  
Sbjct: 168 KHKFAMVISS--TPHDAVKEERHIDRVLQGVIGYLGIKSITSLLTGVGVFILLEACGVQY 225

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +    ++ ++  IP    I      I   L+         + +       +V   + P 
Sbjct: 226 AILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFGVGFGVAVGVIAINMVVGNIIEPK 285

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 286 MMGQRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|25011220|ref|NP_735615.1| hypothetical protein gbs1169 [Streptococcus agalactiae NEM316]
 gi|76797902|ref|ZP_00780164.1| EpsX [Streptococcus agalactiae 18RS21]
 gi|77410564|ref|ZP_00786925.1| membrane protein, putative [Streptococcus agalactiae CJB111]
 gi|23095644|emb|CAD46828.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76586739|gb|EAO63235.1| EpsX [Streptococcus agalactiae 18RS21]
 gi|77163512|gb|EAO74462.1| membrane protein, putative [Streptococcus agalactiae CJB111]
          Length = 377

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 106/331 (32%), Gaps = 13/331 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLL 79
             P L    I +    + S +                   +   +++  + + L +    
Sbjct: 39  IFPFLMGAGIAYIINIVMSVYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLFS 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  +  L+     A    +        I   +         +S           
Sbjct: 99  IVIPDLISSLSSLLVIDTGALAKLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQILK 158

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + +   + +    S      L+  +S IF I  L    + G   +  +D+         
Sbjct: 159 QVLSVLTNLLTS-VSSIAATLLNVFVSFIFSIYVLANKEQLGRQFNLLIDTYLG-STGKT 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+IP    
Sbjct: 217 FHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALIPVVGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L+   ++  A    L+  +        + P +VGG I LP +     +  G
Sbjct: 277 YIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLTAITIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               G+LG+ +   + A I  I K+ I+  +
Sbjct: 337 GALWGILGMLLAVPVAATIYQIVKDHIIKRQ 367


>gi|221233026|ref|YP_002515462.1| hypothetical protein CCNA_00087 [Caulobacter crescentus NA1000]
 gi|220962198|gb|ACL93554.1| conserved membrane spanning protein [Caulobacter crescentus NA1000]
          Length = 369

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/346 (12%), Positives = 99/346 (28%), Gaps = 18/346 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             +  +  + ++ +     +L +++    P+  AL +             +       LA
Sbjct: 7   PSVTTRNAVVFLAVIAGAATLKWMQDILTPLALALFLAVMIDSFARVLTDRTPRFPRRLA 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +   V +        +++      E  +  S+ V +    I                 + 
Sbjct: 67  LPTAVVLSLWLFGMSVWIVIDNGKEFFDHSSQYVDSLNAIIARFTPTIARLAPGLELSVA 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  + L                 R+       F  +  S I ++I L F       
Sbjct: 127 PTIGDLVKHLNPQ--------------RYFGDVAQSFNSFATSAILVLIYLGFILASRRG 172

Query: 184 ISQQLDSLGEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++++ +L  H        K+ + +   +       T+  +           L G+ +  
Sbjct: 173 FARKIVALFPHHAERETNMKMFQRIRDGVEQYLWIQTVTGLMIAASAFMVMTLVGLDNAF 232

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPF 299
               +  + A IP         +     +     +++ A  LF+      F+V   + P 
Sbjct: 233 FWAFLIFLAAYIPILGGAIGCFLPPIFALIQFPESLWPAVLLFVALQGIFFVVGNVILPR 292

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           + G  + +        L       G+ G+F+   L     VI  + 
Sbjct: 293 MQGDSLNMDPTVVLLSLAVWGALWGVPGMFLSTPLTVAAMVILAQF 338


>gi|168260688|ref|ZP_02682661.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168818600|ref|ZP_02830600.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344563|gb|EDZ31327.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205350119|gb|EDZ36750.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|320087994|emb|CBY97756.1| AI-2 transport protein tqsA Transport of quorum-sensing signal
           protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
          Length = 349

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  L+        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVIILAGLHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L G+   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMGIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|260892486|ref|YP_003238583.1| sporulation integral membrane protein YtvI [Ammonifex degensii KC4]
 gi|260864627|gb|ACX51733.1| sporulation integral membrane protein YtvI [Ammonifex degensii KC4]
          Length = 351

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 46/336 (13%), Positives = 103/336 (30%), Gaps = 4/336 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   +++  +L  L +L     P L   ++     P+      +          +A + 
Sbjct: 15  VVAGAILIAAVLWLLRYLLPVLLPFLIGAVLALFLEPLVRPLERRL--PRGVAVFLAMLL 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +    +    L  Y  +E+ +L   +               +     + +         
Sbjct: 73  FLLFLGLVFTLLGVYLAVELGDLAGSIPTYALEAQGKLFQWFNWLRERYGALPPEAA--R 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              + + +           +      F      + L +    +A +F  RD + +     
Sbjct: 131 YLEMTLNALAASAQKWAASLATSLISFFGAVPGFFLIVFVSFLATYFIGRDRYLLESWWQ 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +      + R               +     LV     WL+GV   + LG++T 
Sbjct: 191 RLWPQPWGETSLNLLRRTSTAFWGYLKAQFFLVSLTALVTTIGLWLSGVKYALTLGLLTG 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ ++P   P +     I                      FI+ + L   +V   +    
Sbjct: 251 LLDLLPVLGPSTLFLPWIAYSFFTGCVPLGIKLSLVYGATFIIRQLLEARVVAFTLGAHP 310

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L   FG+  G++ +G  GL +GPV + +I  +++  
Sbjct: 311 LAVLFGMYAGLKLIGPGGLILGPVTVIVIQALYRAW 346


>gi|209809760|ref|YP_002265299.1| membrane protein [Aliivibrio salmonicida LFI1238]
 gi|208011323|emb|CAQ81774.1| membrane protein [Aliivibrio salmonicida LFI1238]
          Length = 355

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 126/340 (37%), Gaps = 7/340 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            +  ++L     LK F   V+   II    +PI +    +   S + +++  T  ++ + 
Sbjct: 22  ALSVLVLWCFSILKPFLLLVVWGGIIATALYPIVAFISKRTSVSESKVSIGLT--IIGVL 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PL+ +         EL       +         + + P     +  +    S      
Sbjct: 80  FIPLIAVSTGIYTSGSELFLGYQDGSIAIPKPNVAMQEWPLIGHKAYAFMLQASSNLESL 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   +             A   G  F+ + +S I   +    F  +     +    + + 
Sbjct: 140 LFKYSSEIKVVAGKAASLAGSLGFGFIQFIVSTIISGV----FMANAAKCERAFILVTDR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L   + K ++ +    +RS   G+  +A+ + ++ G    L GVP+     ++  ++A+I
Sbjct: 196 LTGEHGKALTALSRTTVRSVVQGVIGVAVIQAIMAGLGMALVGVPALGLWVLLVLLVAII 255

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                ++   V  Y+        A    +W  +     D  L+P L+     +P +    
Sbjct: 256 QLPPILALLPVIFYVFSVDTTTTAVIFLIWCLLI-GSSDAILKPILLSRGSDIPMIVILL 314

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G +GG+   G++GLF+G V+++L   ++   +    +  +
Sbjct: 315 GALGGMAMSGIVGLFVGAVVLSLTYRLFMVWLENEDKENK 354


>gi|295399259|ref|ZP_06809241.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978725|gb|EFG54321.1| sporulation integral membrane protein YtvI [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 341

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 99/324 (30%), Gaps = 2/324 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL  +  P++ AL       P      +                 + +      FL    
Sbjct: 16  FLLPYSLPLVFALATALLLEPAVQHLQTHYRLKRVHAVTAVFSLFLIIVGFAFYFLIVIL 75

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++     K+         V            +S       S   S++ +    L+   
Sbjct: 76  VQQIMTFSQKLPHFLSEATAVFNKFIQTWESYSSSIPKEIISSLENSVETIQRLLLE--F 133

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + +    F      + +  +  ++ALF    D   + +++              I  
Sbjct: 134 ATNLTQSIVHFITSIPGFLIHFLVYLVALFLISLDLPKLKKRIKKYLSERTHQRLAMIVA 193

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K          ++++    +      L  V   V + ++  ++ ++P     S    
Sbjct: 194 QLSKAGIGFIKAQFLLSLITFFLALVGLLLLKVDYAVMMALLIVVVDILPILGTGSVLVP 253

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              + I           +   + + +V + + P +    + +  L     +  G + +G 
Sbjct: 254 LGIISIANGNSGLGAGLIVLFLIITVVRRIIEPKVFSTNLGISPLAALVSVYLGFQLLGF 313

Query: 326 LGLFIGPVLMALIAVIWKESIMAI 349
           +GLFIGP L+ L+  + K  ++  
Sbjct: 314 IGLFIGPALVILLEAMIKAGVIKF 337


>gi|315506301|ref|YP_004085188.1| hypothetical protein ML5_5576 [Micromonospora sp. L5]
 gi|315412920|gb|ADU11037.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 371

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/349 (10%), Positives = 107/349 (30%), Gaps = 15/349 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +   + L  ++  +      L A+       P+    + ++        ++  ++
Sbjct: 16  VIGLVLATGVGLALVWATRRVLVWGLVAVFFAVALKPLVDR-LERRVRRRALATLLVFLA 74

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              LF      +    + E+     +     +        L  +                
Sbjct: 75  AFALFAAVGALIVVPLVDEVGRFADRAPDIVREAQAGQGPLGRLL--------------D 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L   +E          +                +++ +++  +    +   I     
Sbjct: 121 RFHLLRYAEPGQLRRYGARLGDPTVGVVRSVAQAVAALVTVVVLAYLMVLEAPKIVAATL 180

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A  ++I R   +++     G  +I++  G +     +L GVP    + +  A
Sbjct: 181 RLTGDGAAARLRRIGRDSSRIVTGYLSGNLLISLICGGLTFVVLFLLGVPFAAVIALAVA 240

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP          +       +      + ++  +   + +  L+P ++G  ++L  
Sbjct: 241 VFDLIPLVGATLGALAAAGAAFLHSPTAGLVVLVFFVVYQQVENHLLQPVIMGRAVRLNP 300

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L     ++  V   GL+G  +      ++ V+ +E   A ++   + + 
Sbjct: 301 LTVLVSVLLSVELAGLVGALLAIPAAGIVQVLLREFAPAGRQALPQPAD 349


>gi|312110140|ref|YP_003988456.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
 gi|311215241|gb|ADP73845.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y4.1MC1]
          Length = 341

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 100/324 (30%), Gaps = 2/324 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL  +  P++ AL       P      +                 + +      FL    
Sbjct: 16  FLLPYSLPLVFALATALLLEPAVQHLQTHYRLKRVHAVTAVFSLFLIIVGFAFYFLIVIL 75

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++     K+         V            +S       S   S++ +    L+   
Sbjct: 76  VQQIMTFSQKLPHFLSEATAVFNKFIQTWESYSSSIPKEIISSLENSVETIQRLLLE--F 133

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              + +    F      + +  +  ++ALF    D   + +++              I  
Sbjct: 134 ATNLTQSIVHFITSIPGFLIHFLVYLVALFLISLDLPKLKKRIKKYLSERTHQRLAMIVA 193

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K          ++++    +  +   L  V   V + ++  ++ ++P     S    
Sbjct: 194 QLSKAGIGFIKAQFLLSLITFFLALAGLLLLKVDYAVMMALLIVVVDILPILGTGSVLVP 253

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              + I           +   + + +V + + P +    + +  L     +  G + +G 
Sbjct: 254 LGIISIANGNSGLGAGLIVLFLIITVVRRIIEPKVFSTNLGISPLAALVSVYLGFQLLGF 313

Query: 326 LGLFIGPVLMALIAVIWKESIMAI 349
           +GLFIGP L+ L+  + K  ++  
Sbjct: 314 IGLFIGPALVILLEAMIKAGVIKF 337


>gi|255527126|ref|ZP_05394013.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296186586|ref|ZP_06854989.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|255509177|gb|EET85530.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296049033|gb|EFG88464.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 383

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 106/341 (31%), Gaps = 14/341 (4%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESSTFLAVIATVSV 70
           I+     +     P +    I F           K          +        I+ V  
Sbjct: 31  IVAIFIKVYNLLFPFILGGCIAFILNIPARFISKKLLSCSDKGIGKIIKKHSTGISIVIS 90

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD-----IPGGMWASELWTK 125
               +   + +    +  + E  + +     +     +   +         +        
Sbjct: 91  FFAIVGIFVLISSIIIPNIIETAAILPKTFDNSARAFQKWMNGNTKLSNNVVNLINNMGI 150

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             ++  +           + +      A+      +++ L +IF I  L      G    
Sbjct: 151 DWNNIFNKAKSIIFNGAGSMLLSTLAAATTLASATVEFILGVIFAIYILAQKRSLGIQFK 210

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L +  +        +I ++      +   G  I+A   G++      L  +P  + + 
Sbjct: 211 KLLYAFMKKEKVDSILEILKLTNLTFSNFITGQCIVAAILGIMFFIIMMLLSMPYALMIS 270

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           V+   +++IP        ++ + L++  N   A    +   +   I D  + P +VG  +
Sbjct: 271 VLICSLSIIPVLGSAIGCSLGVILILMVNPIKAGVFLIVFLLIKQIEDNFIYPKVVGESV 330

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            LP +     +  G +  G+ G+ I   + ++  V+ ++ +
Sbjct: 331 GLPAIWVLVAITLGGKISGVAGMIIFIPMFSVAYVLLRKEV 371


>gi|113476303|ref|YP_722364.1| hypothetical protein Tery_2702 [Trichodesmium erythraeum IMS101]
 gi|110167351|gb|ABG51891.1| protein of unknown function UPF0118 [Trichodesmium erythraeum
           IMS101]
          Length = 353

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 106/321 (33%), Gaps = 13/321 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            +L    +        +SA ++ F                     ++  +  + + +V  
Sbjct: 24  ALLQIFQYFGRIITIAVSATLLSFLLDYPVLFLQKH-GGKRHRAVILVFLVALVIMLVLG 82

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + ++   + K+    + G                            ++     
Sbjct: 83  VILIPLLLEQLTGFIEKLPSWLESGNKQLESFDQWASKYQLP--------INLTVITNKL 134

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           T   ++ +  I      F +  +     I+  I+  F+    G  +   + +   +    
Sbjct: 135 TERLSSQLQDITGEIISFVLNMVGRIFDILITIVITFYLMLHGDRLWNGIFNWLPNHLDI 194

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           + +     + +  ++ FLG  ++A   G+ +       G P  +  G+   +M ++P G 
Sbjct: 195 HVR---TSLKQNFQNYFLGQAMLACLMGVSMTLGLLFTGTPFGLLFGIGIGLMTLVPFGT 251

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +  T VS  L+   N +    + +   +    ++  + P ++G    L  +     L+ 
Sbjct: 252 ALGVTIVS-LLITLENFWLGIKVLIVIVLIEQAIENFVAPRILGSFTGLNPVWIVLSLLV 310

Query: 319 GVRTMGLLGLFIGPVLMALIA 339
           G++  G+LGL I   +   + 
Sbjct: 311 GMQVWGVLGLLIAVPVAGFVK 331


>gi|17229969|ref|NP_486517.1| hypothetical protein all2477 [Nostoc sp. PCC 7120]
 gi|17131569|dbj|BAB74176.1| all2477 [Nostoc sp. PCC 7120]
          Length = 387

 Score =  103 bits (256), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 48/324 (14%), Positives = 113/324 (34%), Gaps = 13/324 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            I     +       ++ A ++ F      S    +       +A++  +  + + +   
Sbjct: 35  AISAIFDYFHSLIVILVGASVLAFLLNYPVSWMAHR-GARREQVAILVFLLALSILLALG 93

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + LF   + + ++LV+++      G      L++        +  T  L       ++  
Sbjct: 94  VTLFPLALTQAQQLVARIPELIDSGRSQLMMLNE--------KAETVGLPINLDALVVQI 145

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  I        ++     L  +  ++  F+  + G  + Q L       F A
Sbjct: 146 NDRVKGQLQAIAGQVLNLAVVTFTSLLDFLLTMVLTFYLLQHGGELWQSLVEWLPSKFRA 205

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
            + +    V    ++ F+   I++      L  A+    VP  +  G+   IMA++P G 
Sbjct: 206 PFSQ---TVRLSFQNFFITQLILSTCMASALIPAFLWLKVPFGLLFGLTIGIMALVPFGG 262

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +   A++  L+   +      + +   I   I++  + P ++G    L  +     ++ 
Sbjct: 263 SV-GIALTTSLVALQDFSMGVRVLIAAVIVQQILENLIAPRILGNFTGLNPVWILISVLT 321

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G R  GLLG+ +      +I    
Sbjct: 322 GARVGGLLGVIVAVPTAVIIKTAL 345


>gi|213428578|ref|ZP_03361328.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 333

 Score =  102 bits (255), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 114/308 (37%), Gaps = 5/308 (1%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
                    +   ++ T+ ++ LF++P+  L    +     L+  V   +     +    
Sbjct: 16  ITKNIVGRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLN 75

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
           +    G      W   L    S  +            +    A+  G     + +    M
Sbjct: 76  NIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHIGR----FMMHCALM 131

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++     Y  G  ++  +      L          +  + IR+  LG+ + A+ + ++ G
Sbjct: 132 LLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGG 191

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               ++GVP    L V+  +  ++  G         I+L   G+    T L +W A+   
Sbjct: 192 VGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGT 251

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + D  +RP L+     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  + 
Sbjct: 252 L-DNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVP 310

Query: 351 ENKEKISS 358
               +   
Sbjct: 311 APTNEPEE 318


>gi|167042757|gb|ABZ07476.1| putative domain of unknown function DUF20 [uncultured marine
           microorganism HF4000_ANIW137G21]
          Length = 361

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 109/331 (32%), Gaps = 22/331 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++FI ++++  LK    P++ A ++ F   P       +        A++A   +M  
Sbjct: 30  AVLLFICILAVIHLKVILQPLVVATLLFFLIRPPAQWLEERYGH-----AILAYGILMAG 84

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            I  +L         + E   +    +        WL ++    ++ +            
Sbjct: 85  VIAVILVGAQILYASLTEFSDQADSLSAKMSEKIVWLEELSFYGYSFDTSALTNLITVER 144

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T    +   F     + F               I L F   +  ++ ++L +   
Sbjct: 145 INDIATGFVGSLAGFTGSAVTVF---------------IFLLFIIVEAETLPRRLRAAFP 189

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +  IS      I +       +A+G+ +++       G+P       IT ++  
Sbjct: 190 DEL-DRFSSISENAGAAINTYVSTKASVALGQAILVALLLKWMGIPGWFLWASITFLLDF 248

Query: 254 IPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P    P+SF    I   I  +   A  +         +  + + P L G  + +  +  
Sbjct: 249 VPYVGAPLSFIPPVILSFILKDPMTAVLITAVLFGNQLVWGQFIEPQLAGQRLDMSPIVL 308

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +       G++G+ +G  L  ++ ++ +
Sbjct: 309 LILVAFWGWAWGIMGMILGVPLAVIMKLVLE 339


>gi|22537260|ref|NP_688111.1| hypothetical protein SAG1102 [Streptococcus agalactiae 2603V/R]
 gi|22534128|gb|AAM99983.1|AE014242_12 membrane protein, putative [Streptococcus agalactiae 2603V/R]
          Length = 377

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 106/331 (32%), Gaps = 13/331 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLL 79
             P L    I +    + S +                   +   +++  + + L +    
Sbjct: 39  IFPFLMGAGIAYIINIVMSVYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLFS 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  +  L+     A    +        I   +         +S           
Sbjct: 99  IVIPDLISSLSSLLVIDTGALAKLVNNLNENKQISEVLNYMGTDKDLVSTLSGYSQQILK 158

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + +   + +    S      L+  +S IF I  L    + G   +  +D+         
Sbjct: 159 QVLSVLTNLLTS-VSSIAATLLNVFVSFIFSIYVLANKEQLGRQFNLLIDTYLG-STGKT 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+IP    
Sbjct: 217 FHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALIPVVGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L+   ++  A    L+  +        + P +VGG I LP +     +  G
Sbjct: 277 YIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLMAITIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               G+LG+ +   + A I  I K+ I+  +
Sbjct: 337 GALWGILGMLLAVPVAATIYQIVKDHIIKRQ 367


>gi|224026079|ref|ZP_03644445.1| hypothetical protein BACCOPRO_02832 [Bacteroides coprophilus DSM
           18228]
 gi|224019315|gb|EEF77313.1| hypothetical protein BACCOPRO_02832 [Bacteroides coprophilus DSM
           18228]
          Length = 334

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 127/342 (37%), Gaps = 20/342 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+ + L+    L  F   +L A  I             K+       AV+  +
Sbjct: 10  KYSLIAIILVLGLILFLKLTPFMGGLLGACTIYIMLRKQMFYLTHKRHFGKGISAVLLLL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  F+VPL  + +  + +++ +             +  W+          +       
Sbjct: 70  ETILCFLVPLSLVAWLLIHKLQTVNVDTQAFIHTITQLTDWVRTQTSYDLFDQKN----- 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         ++    +P            + ++I  +II L+F    G  + Q +
Sbjct: 125 -------------ISSVASILPSIGQFLMGGISSFTVNIGVLIIVLYFMLIGGKRMEQYI 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         K++   +  ++RS  +G+ ++A+ +G++    Y+L   PS +  G +T
Sbjct: 172 YEILP-FNEENKKEVLTEIHLLVRSNAIGIPLLAVIQGMIASLGYYLFDAPSVLLFGFLT 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  ++ Y+ I G+  +A  L L+  + +  +D  +R  L       
Sbjct: 231 CFATIIPIVGTALVWIPLAAYMAISGDWPHALGLVLYCGLIVTNIDNLIRFILQKKLADT 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
             L T FG+  G+   G +G+  GP+L+++  V         
Sbjct: 291 HPLITIFGVFIGLPLFGFMGIIFGPLLLSVFLVCVNIFKNQY 332


>gi|152992929|ref|YP_001358650.1| hypothetical protein SUN_1340 [Sulfurovum sp. NBC37-1]
 gi|151424790|dbj|BAF72293.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 359

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 67/354 (18%), Positives = 133/354 (37%), Gaps = 6/354 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +     +   +I  ++ +S    K F A  +  +II     P+ +    +       +  
Sbjct: 12  LAIEIAVKVGIIALVVYLSYLIAKPFMAVTVWGIIIAVGIAPLVNMLEKRFGHRKKIIIA 71

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I TV V+   I+P   L    +   ++++  +        P    + + P     +    
Sbjct: 72  I-TVMVIAGLILPTYALSGKTIETSEKIIHSMKDGEITIPPPTEKVKEWPVIGEKTYTLW 130

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            + SH     +   +    NGI  +             + +S++        F       
Sbjct: 131 NNASHDLKKTLKPFSKEIKNGITALLSSLGGLIGTVFMFVVSMLIAAA----FLIGSEGA 186

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +    L   L        +++    +RS   G+  +AI + +       L GVP  +  
Sbjct: 187 VKFYKDLSRRLMGDKGNDWAKLSTLTVRSVVNGVLGVAIIQAIFALIGLTLMGVPLAIVW 246

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            VI   + +I   A I    + +Y+  +G+   A  +F    + +   D  L+P L+G  
Sbjct: 247 AVIIMFLTIIQLPALIIILPIILYVFSQGS-GTAEVVFTIYMLIVGASDGVLKPMLMGRG 305

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           + +P L    G +GG+  MG++GLF+G V+ AL   ++   I  +KE++    S
Sbjct: 306 VDVPMLVILIGAIGGMMLMGMIGLFVGAVIFALAYTLFGFWIAEVKEDEALQKS 359


>gi|237744068|ref|ZP_04574549.1| permease [Fusobacterium sp. 7_1]
 gi|229431297|gb|EEO41509.1| permease [Fusobacterium sp. 7_1]
          Length = 357

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 119/327 (36%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KG+F  ++ A+ I     PI      K + +      ++ V V+ + ++  L +    + 
Sbjct: 31  KGYFMTLIMAIFIAILLEPIKKYLKKKSKINDVLAISLSIVFVVLIVVIISLIVIPEIIS 90

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  + + + +++         + TK L    +  I + T      + 
Sbjct: 91  SLKVLNDIYPAISEKVLTIGKDVTNYLAEKNIYTVDTKELDDYFTKFISNNTSNIKEFVL 150

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                   + + F +  ++     + L        ++   +  +       Y     ++ 
Sbjct: 151 AFIGGLVNWTLGFTNLIVAFTLAFLILLDKKNLMKTLENLIIIIFGVKNTPYVMNKLKLS 210

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             +  S   G  I++   GL +     + G P      ++  +  MIP    I    V+ 
Sbjct: 211 KDIFISYISGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSILGGIVAF 270

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +   I   +    + P ++G  + L        ++      GL+G
Sbjct: 271 FLILLVAPIKTLILLIAIVIAQLVDGFIVGPKIIGDKVGLSTFWVMVSMIIFGNLFGLVG 330

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKE 354
           +F+G  ++++I + + + + A +  ++
Sbjct: 331 MFLGTPILSIIRLFYIDLLKAKQGGEQ 357


>gi|172036184|ref|YP_001802685.1| hypothetical protein cce_1269 [Cyanothece sp. ATCC 51142]
 gi|171697638|gb|ACB50619.1| hypothetical protein cce_1269 [Cyanothece sp. ATCC 51142]
          Length = 346

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 104/338 (30%), Gaps = 10/338 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + + I +   + ++       +A+ +      +    +    +  +   V+A   +
Sbjct: 6   FVGVIALLIAIYIFWKIRFIILLTFAAVALATAVNYLVQLLMKSGLKKRSVSIVVALFLL 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F V LL +F   + ++++ +S + LA         WL +        E+        
Sbjct: 66  LLIFAVFLLLIFPPFIDQVQQSLSLLPLAVDRIEAWLMWLQETVPEQLVGEIQKLENLTR 125

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                             +           L   L+I+ + + +           +   +
Sbjct: 126 D----------LPGIATQLVGNFYSIFSGSLGVLLNILLVTVVMIMLLASPRPYIRLFLA 175

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                +     KI +     +     G+    +   L+      +  V   +A  ++  +
Sbjct: 176 FFPSFYRRRAAKILKKSEIALVGWTKGILFNMLVITLLSWFGLSILQVKLSLANALLAGL 235

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +  IP   P+      I L +    + A  + +   +        L P ++   + L   
Sbjct: 236 LTFIPNLGPVLSCIPPIVLALIDAPWKALAVLILYILIQQAESNILTPLVMKQQVSLLPA 295

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            T           G +GLF+   L  +  V  +E ++ 
Sbjct: 296 VTLLAQASFAIFFGFIGLFLALPLTVVAQVWIEEVLIK 333


>gi|163749672|ref|ZP_02156918.1| hypothetical protein KT99_14855 [Shewanella benthica KT99]
 gi|161330485|gb|EDQ01443.1| hypothetical protein KT99_14855 [Shewanella benthica KT99]
          Length = 365

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 105/336 (31%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+  +    K         +A +
Sbjct: 18  KGFAIMAFIVVILAGVKAASPIVVPFVLSAFIAVICNPVIGAMTRFKVPRP-----LAVL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E  +++       +    W+      +       + L+
Sbjct: 73  LLMVFIVMMGLWLAQIVGSSINEFSNQLPHYRDQLVEQFGWIVQKLQTLNIIITKEQILA 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T     G+  +        +  +        +   L F   D     QQ+
Sbjct: 133 YFDPGIALSMTTNMLTGVGGVMANLFLIILTVVFMLFESQTLPRKLHFALDDPEMRMQQI 192

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                     +    +  T++++  G+++G    + GV   +  GVI 
Sbjct: 193 DKFL----------------HSVNQYMVIKTLVSLATGVIIGFGLAIIGVDYALLWGVIA 236

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     S+ L         A    L       ++   + P  +G  + L
Sbjct: 237 FLFNYIPNIGSIIAAIPSVLLAFIQLGPTAAGVTALLYFCTSMVMGNLIEPRYMGKGLGL 296

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 297 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 332


>gi|114798789|ref|YP_759795.1| hypothetical protein HNE_1074 [Hyphomonas neptunium ATCC 15444]
 gi|114738963|gb|ABI77088.1| putative membrane protein [Hyphomonas neptunium ATCC 15444]
          Length = 349

 Score =  102 bits (255), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/345 (11%), Positives = 101/345 (29%), Gaps = 14/345 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + +  I ++ + ++  F  + +A ++      I  +               A + 
Sbjct: 13  RLVLVLFIGGIALAAWVVRDAFLLMFAATLLAIAVHGIADALTRAAPLPRQGALAAAALL 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +       L         E+  +  ++  A Q                          S 
Sbjct: 73  MTGSVAAILWIFGAQLASELSGVTDRLPGAWQRAKETLEAHP--------------AGSA 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +             +  +   A  + + F     S + +I    F      S    + 
Sbjct: 119 LVAEIEAVAAGDSGGSLRGMLTDAGGYALPFASGLTSALLVIFIAAFLTTSAVSTRNGVL 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +          K      + ++   LG++I  +    V+    WL GVP+ + L +I  
Sbjct: 179 LVLPKGVDEKVGKALNASGRALKRWLLGISIDMVIITAVMALTLWLLGVPAFLGLALIAG 238

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +   +P   P+      + L    +   A    +       +    + P +      +  
Sbjct: 239 LAQFVPTVGPLLAAVPGVLLAFTVSPMTALWTAIAYFTVSQLEANLVYPLIQKETTSISP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               F ++     +G LG+ +   ++ +++V   +  +     KE
Sbjct: 299 ALNLFAILAFGMLLGPLGVLLATPILVVLSVFVIQLYVQDTLGKE 343


>gi|330431037|gb|AEC16096.1| putative transport protein [Gallibacterium anatis UMN179]
          Length = 347

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 111/339 (32%), Gaps = 18/339 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                I+    + IIL  +        P L AL +     P+ +  +  K         +
Sbjct: 9   NVKNVIIILACLVIILAGIKSAVEIIVPFLLALFLAIVCTPLINFLVKLKVP-----LWL 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A ++++ L ++ L F        + E  + +    Q        L+ I           K
Sbjct: 64  AVIALLGLIVIALTFFAGLVGTAVNEFSASIPTYKQLLAQRIAGLAAIMDRFDLYRFLPK 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +                   + I     R          +   +++ + F   +  S+ 
Sbjct: 124 TIVEEH------------LDPNIIMGLIRRLLTGISGVITNGFVLLLIVVFMLFEAPSMK 171

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q+L    ++       +  + V   + S     T +++  G+++ +A  + G+   V  G
Sbjct: 172 QKLAIFFQNKQERKELENIQRVLSSVISYLAIKTFVSLLTGVLVWAALAILGIQYAVLWG 231

Query: 246 VITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +  ++  IP    +      +   LI     +   + +   +   I+   + P L+G  
Sbjct: 232 TVAFLLNYIPNIGSVLAAIPVVVQALILNGYSDGLLVAIAFLVINMIIGNIIEPRLMGRT 291

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 292 LGLSTLVVFISLIFWGWLLGSVGMLLSVPLTMAVKIALE 330


>gi|33862876|ref|NP_894436.1| hypothetical protein PMT0603 [Prochlorococcus marinus str. MIT
           9313]
 gi|33634792|emb|CAE20778.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 348

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 95/309 (30%), Gaps = 4/309 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
              V  + L+     + + +++      +     ++K    +   +I  V++  +     
Sbjct: 2   ATSVLFWSLREVLIHLFAGIVLAMALCTLVGELRTRKPMPRSMALLICLVALALVVGTAT 61

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPV----PRWLSDIPGGMWASELWTKHLSHPQSLK 134
             +      +  +L+ ++  A +    +        S +  G+  ++   +       L 
Sbjct: 62  AIVVPPFTEQFHQLLLQLPSAAKELWKLAIGAINQTSAMVYGVDNNKGGWEEQLFANGLN 121

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            L +     +G+    +             + ++F++           +      SL   
Sbjct: 122 ALPDGASLASGVREGLQGLLGLAGNLGSGLVQLLFVLAMSLMVAVQPTAYRDVAISLLPS 181

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            +    + I       + S  +G+ I +    L+      L G+   +A  ++  ++ +I
Sbjct: 182 FYRRRARSILSQCGDALSSWMVGVLISSFCVALLAAIGLSLLGIKLVMANALLAGMLNVI 241

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P   T   + + +    + A  +     +   +    + P ++   +KL    T  
Sbjct: 242 PNVGPTLSTIFPMSVALLDAPWKAVAVLGLYVVIQNLESYVITPSVMHHQVKLLPGLTLT 301

Query: 315 GLVGGVRTM 323
                    
Sbjct: 302 AQFVFTVVF 310


>gi|313647227|gb|EFS11679.1| hypothetical protein SF2457T_4227 [Shigella flexneri 2a str. 2457T]
          Length = 339

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 111/332 (33%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 3   ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 57

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 58  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 117

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 118 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 177

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 178 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 221

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I +L+   ++    +     +   ++   L P ++G  + + 
Sbjct: 222 LLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMS 281

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +  F  L+     +G +G+ +   L ++  +
Sbjct: 282 TMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 313


>gi|304320819|ref|YP_003854462.1| hypothetical protein PB2503_06272 [Parvularcula bermudensis
           HTCC2503]
 gi|303299721|gb|ADM09320.1| hypothetical protein PB2503_06272 [Parvularcula bermudensis
           HTCC2503]
          Length = 395

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 37/351 (10%), Positives = 100/351 (28%), Gaps = 19/351 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                 +  II    +  KG   P + A+++ F      +                + + 
Sbjct: 18  AFYGLGVGVIIFFIFWVAKGVILPFIMAILLSFLIVSTKNFIERLPAIGRLLPDTASFIL 77

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP---------------RWLSDIP 114
              +  + LL +       ++ ++SK          +                  +  I 
Sbjct: 78  AFAVIAIILLIMALIIRENVQAVISKAPEYQTRLTVILTNFVTWAGKVPYLPSDAVGMIE 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
             +          S        +   L+ +                 +   SI+ + +  
Sbjct: 138 EIIDGFRNGIVPSSVSDPTPGTTGDTLRRSAFRAAQSIVRTATGTASNLLGSIVTVFLYT 197

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            F   +    S++L +L       +    +   + +++R+     ++I +    +     
Sbjct: 198 AFLLVERGRFSRKLTALAGAPSRRHELDAVISDISRLVRTYIATKSVINLSVATISFVIM 257

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELF 290
            + G+       ++  +   IP    +        L +    G++  A    +       
Sbjct: 258 SIIGIDFAGFWALLIFVFGFIPIIGAVIAVMAPTLLALIQPDGSLSKAVLTLIMLTGTEQ 317

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++   + P ++G  + L  L     L       GL+G+ +   L  +  ++
Sbjct: 318 MISSFVEPRVMGRNLNLSPLVILISLAVWGSIWGLVGMLLSVPLTVVALIV 368


>gi|270157435|ref|ZP_06186092.1| putative membrane protein [Legionella longbeachae D-4968]
 gi|269989460|gb|EEZ95714.1| putative membrane protein [Legionella longbeachae D-4968]
          Length = 307

 Score =  102 bits (255), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 81/306 (26%), Positives = 153/306 (50%), Gaps = 1/306 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + II +SL+ +  F   ++ A II   ++P+Y  +           A++ T  +  L 
Sbjct: 3   LTVGIIALSLFIIHRFIPSMIWASIIVIATYPLYERWRRFFGSKDDLSALLFTTLIGLLL 62

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++PL +L    + E++  ++ +   N+ G   P +L + P       ++  +      + 
Sbjct: 63  LLPLSWLVGLLIKELQIFINFLQSLNEKGGMAPEFLKNFPWIGSDLVVYWDNNIGKPGMI 122

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               + +    +     +  + G       + + F +++LFFFYRDG  +  Q+  +GE+
Sbjct: 123 KGLLSNIH-LSLTPTSYYVKQIGSNLAHRSVQVGFTLLSLFFFYRDGDRLITQIYLVGEN 181

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                W + +  +PK +R+T  G  ++ +G G ++G  Y L G P+   +G ITA+ AMI
Sbjct: 182 CLGKRWFRYADRLPKALRATVNGTIVVGLGVGFLMGVCYGLVGFPAPTLVGFITALAAMI 241

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   PI F  V++ L   G++F A  + +WG + +F+ D  ++P L+GG I+LPFL   F
Sbjct: 242 PFVVPIVFITVAMILFAFGSMFGAIAVLVWGTLVMFVADHFIKPALIGGAIELPFLAVLF 301

Query: 315 GLVGGV 320
           G++GG 
Sbjct: 302 GILGGG 307


>gi|329116864|ref|ZP_08245581.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
 gi|326907269|gb|EGE54183.1| putative membrane protein [Streptococcus parauberis NCFD 2020]
          Length = 374

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 117/335 (34%), Gaps = 8/335 (2%)

Query: 32  APVLSALIIGFTSWPIYSSFI---SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            P L    + +    + S++     +  +   + ++   +S++  ++     L +   + 
Sbjct: 40  LPFLYGAALAYVVNIVMSTYETGLGRLIKGEKYASLKRAISMILAYLTFFTLLTWIISIV 99

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + +L++ + L  Q      + +              K+      +      +        
Sbjct: 100 IPDLIASLSLMLQFDTASIKTVVHDLSHNQLIAKAIKYAGGVSEITKTISNYSHQLLQQL 159

Query: 149 IP--RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH---LFPAYWKKI 203
           +           +     +S+    +   +   +   + +Q + L +    ++       
Sbjct: 160 LSVFTNILTSVTMIASAVISLFVSFVFSLYVLANKEQLCRQGNLLVDTYTGIYAQRIHYF 219

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             ++       F+G +I AI  G +     ++  +P    +GV+ A  A+IP        
Sbjct: 220 VGLLHSRFHGFFVGQSIEAIILGSLTALGMFILQIPFAATIGVLVAFTALIPVVGAYIGL 279

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            +   L++  ++  A    ++  +        + P +VGG IKLP +     +  G    
Sbjct: 280 VIGFILIMTQSMTQAIIFVVFLVVLQQFEGNLIYPRVVGGSIKLPGMWVLLAITIGASLK 339

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           G++G+ +   L A    + ++++   +  ++K  S
Sbjct: 340 GIIGMVVAVPLAATFYQMIRDNVEKKQAIQKKQVS 374


>gi|296132875|ref|YP_003640122.1| sporulation integral membrane protein YtvI [Thermincola sp. JR]
 gi|296031453|gb|ADG82221.1| sporulation integral membrane protein YtvI [Thermincola potens JR]
          Length = 355

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 108/349 (30%), Gaps = 5/349 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L     +  +I+    +   ++  +  P + A ++     P+     SK +       +I
Sbjct: 4   LIKNLFVILIIVSGTYLFYRYILPYIVPFVIAGVLTVFIEPLVRLLQSKAKLPRAPAVII 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + + ++ L    L       + E+ E  S + +  +        L       + S   + 
Sbjct: 64  SLILIIGLTGTLLTLFVARLVAELIEFSSSLPMYTEMLAKNIVHLRATAESFYFSLPVSL 123

Query: 126 HLSHPQSLKILSETF-----LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 ++  + +               +               + I   +IA FF  +D
Sbjct: 124 LEFIANNMGTIEKNIGAYLTQLQAFTKEMLNQFIILVSSVPGILVIIFVSLIATFFMAKD 183

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I      +    + +   ++ + V   +        I+             +   P 
Sbjct: 184 RRVIIGFWLRIMPEPWGSKTIQVLKDVSAALFGYARAQLILISITFFNSLIGLAIIDAPY 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + +  +  +  +IP   P +     I   I  N            I + I+ + L   +
Sbjct: 244 ILLMAAMIGVFDLIPVLGPGTIYIPWIIWEIINNNVVFAVKLGVVYIIIVIIRQVLEAKV 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           V   + L  L T   +  G++  G LGL +GP+ +  +  + K  I+  
Sbjct: 304 VANAMGLHPLATLISIYVGLQIFGPLGLVLGPLFLIGLKALAKAGIVDW 352


>gi|192291486|ref|YP_001992091.1| hypothetical protein Rpal_3110 [Rhodopseudomonas palustris TIE-1]
 gi|192285235|gb|ACF01616.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           TIE-1]
          Length = 383

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 90/344 (26%), Gaps = 3/344 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L + +   G    + + ++ G     +                 +  + + 
Sbjct: 24  IATVSFAALLYAAWQFAGTLFLIFAGVLFGVFLNALTELTGKLVGGPHGLRLALICLVLT 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L I            + K L   +     +   +        G +  +   +       
Sbjct: 84  GLTIGVAFLGGNTISQQAKALSGTIKTQIVNVKALLERNGVDTGFLELNPTPSAAHPETT 143

Query: 132 SLKILSETFLKT---NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +              +G   I     +  +  +    +   ++     F          L
Sbjct: 144 TPVQPRNLPSAGEIASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQPSVYRNGL 203

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    +      I     ++++   L   I  +    V  +   L G+P    LG+  
Sbjct: 204 VRMVPRRYRVQADVIVTDTGEMLKRWLLAQLITMMAVFAVTATGLSLIGIPGAFILGIQA 263

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A IP    I    + +   I          F+       +    L P +    I +P
Sbjct: 264 GLLAFIPTVGAILGGLIIVLAAIGSGWIAVVSAFVLFLGVHALESYILTPLIQRQAIDIP 323

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               F   +      GL GL +   LMA+  V+           
Sbjct: 324 PATLFAMQILLGIVFGLWGLALALPLMAIGRVVLDHLRGEEPAE 367


>gi|187778849|ref|ZP_02995322.1| hypothetical protein CLOSPO_02444 [Clostridium sporogenes ATCC
           15579]
 gi|187772474|gb|EDU36276.1| hypothetical protein CLOSPO_02444 [Clostridium sporogenes ATCC
           15579]
          Length = 325

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 120/332 (36%), Gaps = 13/332 (3%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +I FIIL+    ++   +    + +I +   PI++     K  +  F A++  V+++ 
Sbjct: 1   MLLIFFIILIKNTIVRDILSLFFISFVIYYILKPIHTFL-KHKGVNEKFSALLLVVTLIM 59

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  + ++ +    + E   + S V    ++   +   ++ +        +  K     +S
Sbjct: 60  IIGIFIISIIPAIIKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKINVKIES 119

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +     +    + F             +  L    + I +++F   G  I Q+   + 
Sbjct: 120 YTVSIGENILNKFVGF------------GENILDYAVIPIIVYYFLAAGNKIIQKFFMIF 167

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   K +   + K++    +   I+ +   ++        G+   + L +I     
Sbjct: 168 PVKVRGIVKNVFEDIDKILARYIISQIILCLIITILTFLVLVGLGIKLPILLSLINGFFN 227

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP   P+  +  +I +    +   A    +       I    L P + G  + +  L  
Sbjct: 228 IIPYFGPVIGSLPAILIAFTKSPKTALWALILLYAIQQIEGDILSPKITGDSVDMHPLTV 287

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L+ G +  G LG+ +   +  ++ +I+++
Sbjct: 288 ILLLLIGGKIYGFLGMVLAIPIGVIMKIIYED 319


>gi|119385679|ref|YP_916734.1| hypothetical protein Pden_2954 [Paracoccus denitrificans PD1222]
 gi|119376274|gb|ABL71038.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 444

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 115/361 (31%), Gaps = 28/361 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
              +  + + ++       + F  PV  A+++ F   P           +    A+++  
Sbjct: 27  NWAVIGIFVILLFSFFAQARSFLMPVTLAILLFFVFIPFRRLMERLGIGAVITAAIVSLG 86

Query: 69  SVMCLFIVPLLFLFYY--GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT-- 124
            V+ + ++  +        +    ++  ++           R L      +      +  
Sbjct: 87  LVVAVVLIGFVISGPANRLIENAPQITQRLEQRFTEIRSNFRGLERAAEKIDEIAGGSSS 146

Query: 125 ---------------------KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                                  +  P + +   +               +    +    
Sbjct: 147 PPEPAAPPGEAPPDATLTGTLSAIPAPGAPQPPDQQIQVEVNATPETSTLASALNLGPAL 206

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI-SRIVPKVIRSTFLGMTIIA 222
              IIF +  LFF    G  +  ++    + +       +  R +   + +    +T+I 
Sbjct: 207 VGQIIFTLFLLFFLISSGDLLYLKIVQSFDSMREKRAAYLALREIEDSLGTYLGAITLIN 266

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATC 280
              G+ +G A W  G+PS V  G+   ++  IP    ++   ++  +   +  ++F    
Sbjct: 267 ACLGVAIGLAMWAWGMPSPVLFGLAAFLLNFIPYLGSVAGIIIATLVGVFVFDDLFAPLM 326

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + L       +  + + P+ V   ++L  +  F  +        ++G+ +   L+ ++ V
Sbjct: 327 VGLTYLAITALEGQLITPYFVSRRLQLNTVVVFLTVALWAWLWSVIGMIVAVPLLVVMRV 386

Query: 341 I 341
           +
Sbjct: 387 L 387


>gi|325964271|ref|YP_004242177.1| permease [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470358|gb|ADX74043.1| putative permease [Arthrobacter phenanthrenivorans Sphe3]
          Length = 418

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/288 (15%), Positives = 94/288 (32%), Gaps = 15/288 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              IA + ++ +       ++     +  EL  +                          
Sbjct: 126 ATGIAFIGLLLVLGGVFTVIYLSVRNQWGELAQQAASGLDELEKFL-------------- 171

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L        + L    +  ++      +   A     +  ++      MI+ LFFF +DG
Sbjct: 172 LTGPIPIEQEQLDQARQGIVEFATSSQVRSGAITGLSVVTEFFAGAALMIVILFFFLKDG 231

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I             A  +++     +V+     G  I+A+ + + +G+A  +  VP  
Sbjct: 232 AKIWNFFLRPFSGAREAKLRRVGSRTLEVLGGYVRGTAIVALVDTVAIGAALLIMQVPLA 291

Query: 242 VALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L +I  I A IP     ++    ++  L+      A  +         +    L+P +
Sbjct: 292 LPLAIIVFIGAFIPLVGATVAGILAALVALVANGPVVALIVVAVVIAVNQLEGDLLQPIV 351

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +G  ++L  L     L  G    G++G  +   L A+   I +     
Sbjct: 352 MGKSLQLHALVILMALTAGTILAGIVGAVLSVPLAAVAWAIIQVWTAE 399


>gi|72381974|ref|YP_291329.1| hypothetical protein PMN2A_0134 [Prochlorococcus marinus str.
           NATL2A]
 gi|72001824|gb|AAZ57626.1| conserved hypothetical protein [Prochlorococcus marinus str.
           NATL2A]
          Length = 358

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/343 (13%), Positives = 114/343 (33%), Gaps = 3/343 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +    + I ++ L+ LK       +++II      I        +       VI  
Sbjct: 3   QTSFLSITALIISVLILWGLKEIVILFFASIIIAMALCTITGKIRDFFKIPRWISLVITI 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +S++ +  + ++ +      E +EL++++  A      +          +   +      
Sbjct: 63  ISIILISSISIVIIIPQFTSEFQELINQIPSAASKLWELSINTFLNFSELVYKDNIPDLA 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSI 184
                   LS      +  + +    ++   +  +     L +IF+I           S 
Sbjct: 123 DQSILTNKLSMIPDGASLANAVTDSITKLVGLVSNVGIGILQLIFIISVGLMITLQPQSY 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +    L    +    + I       + S   G+ + +I   +++    ++ G+   +A 
Sbjct: 183 REVAILLVPSFYRRRARTILLRCGNALSSWMAGVLLSSICVAILVSIGLYILGIKLVIAN 242

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +I  ++ +IP   P   T   + + +    + +  +     I   I    + P ++   
Sbjct: 243 ALIAGVLNVIPNVGPTISTIFPLSVALLDTPWKSLAVLGLYIIIQNIESYVITPSIMHKQ 302

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +KL    T           G LGL +   +  +I V  KE I+
Sbjct: 303 VKLLPGLTITAQFIFTIIFGPLGLLLAIPMAVVIQVFVKEIII 345


>gi|218295848|ref|ZP_03496628.1| protein of unknown function UPF0118 [Thermus aquaticus Y51MC23]
 gi|218243586|gb|EED10114.1| protein of unknown function UPF0118 [Thermus aquaticus Y51MC23]
          Length = 365

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 118/352 (33%), Gaps = 8/352 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  ++ ++    L         +L+A    + + P+   F +++      L V+   
Sbjct: 15  RVAVYLLLFYLGFRLLQRAWPALQILLTAFAFAYLAHPLVRFFEARRLPR--ALGVVLVY 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + LF+    FL    ++E+  L  ++       +     L D    +   E     L+
Sbjct: 73  LGLGLFLGLASFLTAQTVVELSRLAQELPRLLDPFLAWLLSLPDRVRAVPVPESLKPILA 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASR------FGMIFLDYCLSIIFMIIALFFFYRDGF 182
                            + F+     +      F    +     ++  +    +F  D  
Sbjct: 133 EASRNLQGLLQGFLETLLRFVQGLLGQGGNLLGFFASLVGGVFQLLAALTLSIYFLYDLP 192

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +         +      ++R + + +     G  ++A   GL++G    L GVP   
Sbjct: 193 RLGRAALLAFPEPYQPLVADLARKLDRSVGGYVRGQLLVAFLVGLIVGVGLSLVGVPLAA 252

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           +LG +  +  +IP    I     ++ L   G +      FL   +   +      P +VG
Sbjct: 253 SLGFLAGVFNLIPFVGVIVSGVPALLLAATGGLVKVLLAFLVLWLANQLEGNLFGPLIVG 312

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +L  +     ++ G   +GL G  +G    A + V+ ++        +E
Sbjct: 313 RATRLHPVTAIAAILVGASLLGLWGALLGVPAAAFLKVLLEDYYRQSPFYRE 364


>gi|16766868|ref|NP_462483.1| permease [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|62182081|ref|YP_218498.1| PerM family permease [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161616631|ref|YP_001590596.1| hypothetical protein SPAB_04448 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990799|ref|ZP_02571898.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168465136|ref|ZP_02699028.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444171|ref|YP_002042827.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|16422143|gb|AAL22442.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|62129714|gb|AAX67417.1| putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161365995|gb|ABX69763.1| hypothetical protein SPAB_04448 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402834|gb|ACF63056.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195632227|gb|EDX50711.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205330660|gb|EDZ17424.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|261248735|emb|CBG26574.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267995813|gb|ACY90698.1| putative permease [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301160121|emb|CBW19641.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312914605|dbj|BAJ38579.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321226631|gb|EFX51681.1| Putative PerM family permease [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322716569|gb|EFZ08140.1| UPF0118 inner membrane protein yhhT [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 349

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVIILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L G+   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMGIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|260204344|ref|ZP_05771835.1| hypothetical protein MtubK8_08558 [Mycobacterium tuberculosis K85]
          Length = 342

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 108/310 (34%), Gaps = 5/310 (1%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V    + 
Sbjct: 1   MFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRT 58

Query: 103 G-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +                 +   H++        +   +  N  +++  F         
Sbjct: 59  TDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLHFLRDAAGSLA 118

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
               S I  +        +   +   +  L   L         + +  ++R T  G  +I
Sbjct: 119 GVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFVI 177

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           A  +G+   ++ ++AG      +  I    +++IP G  I      I ++  GNI     
Sbjct: 178 AACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAWGIF 237

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI  
Sbjct: 238 VLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIVT 297

Query: 341 IWKESIMAIK 350
                +   K
Sbjct: 298 TIDVYLAVYK 307


>gi|238754368|ref|ZP_04615724.1| AI-2 transport protein tqsA [Yersinia ruckeri ATCC 29473]
 gi|238707401|gb|EEP99762.1| AI-2 transport protein tqsA [Yersinia ruckeri ATCC 29473]
          Length = 355

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 103/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++ +I+  +        P L A+ +     P+      K +   T   V+   
Sbjct: 17  RIVAMLAMLVVIMAGIKAASPIVVPFLLAIFLSIVLNPVVRLLQ-KIKIPRTLAIVLLVT 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L    +  L        + L     +  +    +  +       M   ++      
Sbjct: 76  MIILLMSFVVGMLGSSLNEFARSLPQYRGVMLEKIRELHEFAERFNINMSVDDVMKYVDP 135

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                  F +R           I  +++ + F   +   +  +L
Sbjct: 136 ------------------GAAMNFVTRLISHLSGAMTGIFLLLMTVVFMLFEVERLPYKL 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + +   P    ++ +   K +    +  T+I++  G+V+        V      G++ 
Sbjct: 178 QLMFDD--PIKGIEVLQRAVKGVTHYLVIKTVISVATGIVVWLFLASMDVRFAFIWGLLA 235

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      I   L+     +A  +     +   I    + P ++G  + L
Sbjct: 236 FLLNYIPNIGSVLAAIPPIIQALLFNGFADALVVAGGFILINLIGGNIIDPRIMGRGLGL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  +  +  +
Sbjct: 296 STLVVFLSLIFWGWLLGPIGMLLSVPLTIIAKIALE 331


>gi|324990430|gb|EGC22368.1| permease [Streptococcus sanguinis SK353]
          Length = 322

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 104/328 (31%), Gaps = 13/328 (3%)

Query: 34  VLSALIIGFTSWPIYSSFISKKE-------ESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++   +I F                            V+  ++++ + I  L+ +     
Sbjct: 1   MIYGAVIAFVLNVPMKKIEQYLVKLKVKAELRRPIAMVLVFLALILIVIALLVLVLPTLA 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             + +L + +         +      +    + ++     +      +  S +      +
Sbjct: 61  QTISQLGTVLSTVLTQLGKL------LGSSEFVTKDMLSTIVSGIQGQSSSISQALIGFL 114

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +           ++  L I+F    L          S+ L              I ++
Sbjct: 115 SGLTSNIGNIFSSLMNAFLIIVFTFSFLSSKEHLAAMTSRLLKVFLPEKVVIKLTYIGQV 174

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             +      +   I A+  G+++   Y + G+P  V  G+   +++ IP   P+    V 
Sbjct: 175 ALETYDQFLMSQLIEAVIIGVMIAVGYSVFGIPYGVMTGIFAGVLSFIPYVGPMIACVVG 234

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
              +   +   A    L   +   I    + P +VG  I LP + T      G    GLL
Sbjct: 235 AIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQSIGLPAIFTLAAASIGGNLFGLL 294

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+     + A+I  + KE ++A +   +
Sbjct: 295 GMIFFTPIFAVIYRLVKEFVVAKENQLD 322


>gi|302338794|ref|YP_003804000.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
 gi|301635979|gb|ADK81406.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
          Length = 363

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 107/335 (31%), Gaps = 22/335 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++  +++ ++   L        P++ ++ + F   P  +   ++          I  + 
Sbjct: 9   GLLFIIVVIMVGALLKAAGNVLLPLIISVFLSFIIAPFINFL-NRMHVPRFIAISIVVLF 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +  +  LF+       + E              + R + +  G  +   L   + + 
Sbjct: 68  LLGVMFLIFLFIQTSVNSFIAEFPKYAERFRIIIRELFRNVENRFGLSYEELLGQINWN- 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                              +     +     +++    + ++I L F   +     ++L 
Sbjct: 127 -----------------SALRGSLVKVSGNLMNFISRFLIVMIFLIFLLLEKPYFKKKLQ 169

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
              E         +   + + +         +++  G+ +  A  + G+   V  G +  
Sbjct: 170 MAFEEKTGKKVGNMIEHINQQVARYLSLKFFLSLATGIAVWFALKIIGLDFAVVWGTLAF 229

Query: 250 IMAMIPGGAP---ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           ++  IP       +  T +   +    +      + L       I+ + L P L G  + 
Sbjct: 230 LLNFIPSIGSSFHMIITILMGIIQFYPSPGKIFAVALSMIGIQAIIGQFLDPKLQGHRLN 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L      F L       G++G+F+   +  +I +I
Sbjct: 290 LSPFVILFSLALWGWIWGVVGMFLAVPITVIIQII 324


>gi|302392357|ref|YP_003828177.1| sporulation integral membrane protein YtvI [Acetohalobium
           arabaticum DSM 5501]
 gi|302204434|gb|ADL13112.1| sporulation integral membrane protein YtvI [Acetohalobium
           arabaticum DSM 5501]
          Length = 352

 Score =  102 bits (254), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 115/337 (34%), Gaps = 2/337 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+    I  + L+   +L  +F P + A +I     PI     +K   +      I    
Sbjct: 8   GLGILGIALLSLIFFEYLLIYFLPFIIAFLIASLIEPIVELLQTKLRLNRGLAVTICLGI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWASELWTKHL 127
           ++ + I+ +        +E+ +L + +      G         +     +       + +
Sbjct: 68  ILIIIILLITIFLSRLFVELTKLANNIPEFKTLGARAQWVVKQNQNLSRLLLELELPETV 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +  +        + I                +   ++  +I+ FF  RD   I+Q 
Sbjct: 128 KEVITQNLEHLYQQLRSMIQRGITTFLELLRGLPKFITILLVSLISTFFISRDKELINQT 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +       +     K+   +            I+     +++ +   L G    ++LG++
Sbjct: 188 ILRAFPRPWHKNINKLESEIMSAAIGFIRAELILISITTVLMITGLLLLGSDYAISLGLV 247

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++ +IP   P           +     +     L   I + ++ + +   ++G  I +
Sbjct: 248 AGLLDLIPVIGPSLVILPWAGYSMIIGDISFGVSLLAVLITVAVIRQLVEAKVIGENIGI 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L T   +  GV+ +G+ G FIGP ++ L+  I + 
Sbjct: 308 HPLATLISMYLGVQILGIGGFFIGPAILILLRAIIRA 344


>gi|152972348|ref|YP_001337494.1| PerM family permease [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238896937|ref|YP_002921682.1| putative PerM-family permease [Klebsiella pneumoniae NTUH-K2044]
 gi|262040540|ref|ZP_06013781.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330000595|ref|ZP_08303741.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
 gi|150957197|gb|ABR79227.1| putative permease (PerM family) [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549264|dbj|BAH65615.1| putative PerM-family permease [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|257167906|gb|ACV49727.1| putative transport protein [Klebsiella pneumoniae]
 gi|259042133|gb|EEW43163.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328537967|gb|EGF64143.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
          Length = 349

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 105/332 (31%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++        +L AL       P+ + FI +           A   
Sbjct: 13  ILLKLAALVIILAGIHAAADILVQLLLALFFAIVLNPLVTWFIRRGVRRP-----FAITL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+   +V L  L       + + V+ +   N+        L +    +       + L  
Sbjct: 68  VVTAMLVMLTALLGVLAASLNDFVAMLPDFNRALTRKILQLQEYLPFLNLHINPERMLRR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S ++++        +           M  +     +  +   L F   +       L 
Sbjct: 128 MDSERLMTWATTLMTQLSGAMASIVLLVMTVIFMLFEVRHLPYKLRFALNNPRLHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T+I++  GL++       GV   +  GV+  
Sbjct: 188 RAL----------------KGVTHYLALKTLISLWTGLIVWLGLLAMGVQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     +  L+   I+    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSAISAIPPMLQALLFSGIYECLLVGALFLVVHMVLGNMVEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|186683898|ref|YP_001867094.1| hypothetical protein Npun_R3766 [Nostoc punctiforme PCC 73102]
 gi|186466350|gb|ACC82151.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 367

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 111/348 (31%), Gaps = 12/348 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  ++++  + + +   + + +A+++ F           +             +  +
Sbjct: 19  IIILNGWLLIQVVQYFQPLISIIAAAILLAFVLNYPIQFLQEQ-GVKRNLAIAGVLLLTL 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +   + L    + ++ EL + +      G    +   D         L  + L    
Sbjct: 78  VILVALGITLVPLIIQQLVELANILPSWIDSGTQQLQTFQDW-------ALSQQQLPINL 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S          +N +         F +  +   L+++  ++   +   +G  +   +   
Sbjct: 131 SGLFTQVLERLSNQLQSFTGRILGFAVDTIGIVLNVLLAVVLTVYLILNGERLWDGIFQW 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             H      +++ R       + F+G   +    G+ +  A+    VP  +  G+   + 
Sbjct: 191 FPHNIGLRLRELLRE---DFHNYFIGQATLGAVLGVTITLAFLTLRVPLALLFGIGIGLF 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++ P G       VS+ +    N +    +         +    + P ++G    L  + 
Sbjct: 248 SLFPFGTGFGIAIVSLLVA-LQNFWLGVEVLGIAVAIDQVNSNFVAPRILGNLTGLNPVW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               L+ G +  G+LGL I   + + I               + I S 
Sbjct: 307 VVISLLLGAKLGGVLGLLIAIPIASFIKDTTDSWRAGEFNKIDDIVSE 354


>gi|325684228|gb|EGD26404.1| membrane protein [Lactobacillus delbrueckii subsp. lactis DSM
           20072]
          Length = 357

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 109/341 (31%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
              N   + R  ++ +I+++LY+++     +L + I  +    +      K +  S   +
Sbjct: 8   RFKNNIHLRRTTVLVMIILALYYVRAMMNTILLSFIFTYLIVHLVRFVQGKFKHVSDKLI 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  + ++ L    L +     + ++ ++   V+   Q                  +++
Sbjct: 68  VALTYLLIVVLLYFGLRYYVPVLVKQVTKMTKSVINYYQT-----------------NDV 110

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   + +   + +    + +  +      FG + + + ++++              
Sbjct: 111 GWLMTQLHKYVSEKTISSQVKSSLTALTAALKGFGSVTMSFVMALVLSFFYTIELKEMQT 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S              R              +IA+    +      +  +P   
Sbjct: 171 FSQSFLKSDLFGWLFEDIAYFGRKFTNTFGVVLEAQFLIAVCNTALTIVCLAIMKMPQIF 230

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I +++P    I     +S+     G I +   + +  A+   +    L P  +
Sbjct: 231 ALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPKFM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G    G  GL +   +      I 
Sbjct: 291 SSKTELPIFYTFVVLLFGEHFFGTWGLIVSVPIFTFFLDIL 331


>gi|317123626|ref|YP_004097738.1| hypothetical protein Intca_0463 [Intrasporangium calvum DSM 43043]
 gi|315587714|gb|ADU47011.1| protein of unknown function UPF0118 [Intrasporangium calvum DSM
           43043]
          Length = 370

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 111/346 (32%), Gaps = 18/346 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  + + Q +    ++ I++     L+    P+L A++I   + P+ +    +       
Sbjct: 20  RAAIRSLQVLAVLTLLVIVVWVGVQLRLVVVPLLIAVLIAAAASPLVTWLNRR-GLPRAP 78

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  ++   +       +      +  EL +      +                    
Sbjct: 79  SVWVTLLAAFAVLGGLGWLVARAAQDQWGELAAGAGEGVKELERFLA------------- 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L   +                   +       + ++    I   ++ L+F  +DG
Sbjct: 126 --ESPLGLDRREIEDLWAQAAEFLAGPQGQGVITGATLVVEILAGIFLGLVLLYFLLKDG 183

Query: 182 FSISQQLDS-LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             I   L S L        + +++      +     G  +IA+ E  ++G+A  + GVP 
Sbjct: 184 DRIWTFLRSELLPDRHSPRFDRVAAEAVSTLGGYVRGTALIALVEATLIGAAVAILGVPL 243

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + + ++  I A IP     +  A++  + +    +  A  L     +   +    L P+
Sbjct: 244 ALPIAIVVFIGAFIPLLGATAAGALAALIALVSNGVVAALVLVAVVIVVNQLEGDVLSPY 303

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++G  + L  L     L  G  + G++G  +     A+        
Sbjct: 304 VLGKAVSLHPLAVLLALSAGTISAGIIGAILAVPFAAVAWSAITTW 349


>gi|312887454|ref|ZP_07747053.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311300094|gb|EFQ77164.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 368

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 116/336 (34%), Gaps = 20/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    + ++   L+ L+    P   AL+I     PI +  + + +       + + +
Sbjct: 11  KTTVVLFGLILLTYILFTLQSILVPFAFALVIAILLNPICNLLM-RIKLPKAVAILTSIL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               +    + FL    +       +  V        +  WL +                
Sbjct: 70  IAYIIVGGIVFFLSMQMLHFGDTFPALQVKFAHIFHDLQLWLQNSFH------------- 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               + I  +  L    ++             L+    +  + + +F F      +   L
Sbjct: 117 ----ISINKQNELINEALNNSKALLGATLGTALNTLSVLFLIPVYIFMFLFYKTLLLNFL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +       + + I       I+S  +G+ + A    ++      + GV   + +GV+ 
Sbjct: 173 FEVFAEENSQHVRVILNQTKTAIQSYMVGLLLEAFIVAILNSVGLLILGVNYAILIGVMG 232

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           AI+ M+P    I   A+ + +  + K        + +   I  FI +  L P +V   ++
Sbjct: 233 AILNMLPYIGGIIAIAIPLLIATVTKDGYSTQIGIVISFMIVQFIDNNILVPRIVSSKVQ 292

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L +   ++ G    G+ G+F+    +A++ +I+
Sbjct: 293 INALVSILVVLLGGALWGVSGMFLSIPFVAILKIIF 328


>gi|300811539|ref|ZP_07092028.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497479|gb|EFK32512.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 357

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 109/341 (31%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
              N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +
Sbjct: 8   RFKNNIHLRRATVLVMIILALYYVRTMMNTILLTFIFTYLIVHLVRFVQGKFKHVSDKLI 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  + ++ L    L +     + ++ ++   V+   Q                  +++
Sbjct: 68  VALTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQT-----------------NDV 110

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   + +   + +    + +  +      FG + + + ++++              
Sbjct: 111 GWLMTQLHKYVSEKTISSQVKSSLTALTAALKGFGSVTMSFVMALVLSFFYTIELKEMQT 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S              R              +IAI    +      +  +P   
Sbjct: 171 FSQSFLKSDLFGWLFEDIAYFGRKFTNTFGVVLEAQFLIAICNTALTIVCLAIMKMPQIF 230

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I +++P    I     +S+     G I +   + +  A+   +    L P  +
Sbjct: 231 ALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPKFM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G    G+ GL +   +      I 
Sbjct: 291 SSKTELPIFYTFVVLLFGEHFFGIWGLIVSVPIFTFFLDIL 331


>gi|332175898|gb|AEE25152.1| protein of unknown function UPF0118 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 373

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/363 (14%), Positives = 109/363 (30%), Gaps = 25/363 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + W++   +L +LYF +    PV+   +I     P+ +               ++   ++
Sbjct: 16  VVWLLFLGVLYTLYFTQSLLMPVVVTSLIALLLSPLVAGLQRLHIPR-----TVSAFLLV 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP- 130
              I P  FL        ++    V    QH       +SD   G   +           
Sbjct: 71  ATLIAPFTFLGAELAEPAQKWAKLVPELTQHITEQLDSISDAMDGKENAPAQNDDDDGFS 130

Query: 131 ----------QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                     Q+     +  +                         ++  +I   F    
Sbjct: 131 FFGIFSEKAEQAPVKSDDNAMSQRLKQGGLEIMLSVLSSTPLILAQLMTGVILTLFLLIF 190

Query: 181 GFSISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           G  + +        +      + +   + K +    + ++II  G GL      +  G+ 
Sbjct: 191 GPKLFEAFIRYFPKITDKDQARCLVATIQKELSRYIVTVSIINAGLGLSTALVLYFIGIE 250

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +  GV+  ++  IP    +    +     L+  G    A        +   I  + + 
Sbjct: 251 DALLWGVLAGLLNFIPYVGSLIGATILTLAGLVQFGMQVTALIPPGVYFVLNLIESQFIT 310

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV------IWKESIMAIKE 351
           P ++G  ++L  L     L+      G +G+ +   L+  I +      IW   +  I+ 
Sbjct: 311 PTVLGRNMQLNPLIVVLWLLVWGWLWGAVGVLLAVPLLVCIKLTLAQLNIWTHWLKIIEA 370

Query: 352 NKE 354
             E
Sbjct: 371 KSE 373


>gi|320535789|ref|ZP_08035870.1| hypothetical protein HMPREF9554_00591 [Treponema phagedenis F0421]
 gi|320147337|gb|EFW38872.1| hypothetical protein HMPREF9554_00591 [Treponema phagedenis F0421]
          Length = 365

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/359 (15%), Positives = 126/359 (35%), Gaps = 9/359 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI-------S 53
           M + +         ++  ++++       +   +  + I+     P+Y+  I        
Sbjct: 1   MNKNIGFQTISFFILLGLMLVLVGKLFLPYATVLFWSAILYILISPLYNKIIAKMNPEKK 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
               +  FLA    V  + +    LLF+    + + K L  ++ L       +       
Sbjct: 61  WFNLTRRFLAGTFAVGTVVIVAAVLLFIVIKLVGQGKALFQRISLFLIDHNELFFNFDKE 120

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                  +L    L               +     +  +          + +S++F    
Sbjct: 121 ALNELVIKLSMGTLDISAIDIKKEVMNFLSQYSSNLLGYTRTLFANMGLFAVSLVFTCFT 180

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L+FFY DG  +     S+          K+     +V  +   G+ +++  + ++    Y
Sbjct: 181 LYFFYIDGHYLLNLFISIMPIKA-DASTKLLNKFNEVTTNLLKGLFLVSFYQCIISLIIY 239

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +  V   + L ++T   + +P       +  + I + +           L     +  +
Sbjct: 240 LIFKVEGALLLAILTFFSSFLPLVGCAFVWFPIGIGICLLEGWLKGIIFLLVAGTLISFM 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           D  LRPF +   IK+  L  FF ++GGV+ +G  G+ +GP+++ L   I   +  + KE
Sbjct: 300 DNFLRPFFLKDRIKIHPLLIFFSMLGGVQMLGFNGIILGPMIVILFFTIIDIAHDSEKE 358


>gi|220913551|ref|YP_002488860.1| hypothetical protein Achl_2806 [Arthrobacter chlorophenolicus A6]
 gi|219860429|gb|ACL40771.1| protein of unknown function UPF0118 [Arthrobacter chlorophenolicus
           A6]
          Length = 387

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 122/351 (34%), Gaps = 16/351 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +   Q ++   +  + + +L  +K    P+L ALI+     P  +    ++  +   
Sbjct: 38  RVGIRAAQTLLILAVSVVAVFALLQVKLLVIPMLIALILAAAISPFVNVL-KRRGINDAL 96

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VIA VS++ +       +++    +  +LV +            +             
Sbjct: 97  ATVIAFVSLLVVLGGVFTVIYFSVRSQWDDLVQQASSGLDQLQSFLQS------------ 144

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +       +           A     +  ++    + +++ LFFF +DG
Sbjct: 145 --GPLQIDEAQIDAARNAIVDFATSSQARSGAITGLSVVTEFLTGAVLLVVILFFFLKDG 202

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I   L S       +  +++     +V+     G  I+A+ + + +G+A  +  VP  
Sbjct: 203 ERIWSFLISPFTGDRASRLRRVGTRSQEVLGGYVRGTAIVALVDTVGIGAALLILQVPLA 262

Query: 242 VALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L ++  I A IP     ++    ++  L+      A  +         +    L+P +
Sbjct: 263 LPLAMVVFIGAFIPIVGATMAGILAALVALVANGPVVALIVVAVVVAVNQLEGNLLQPVV 322

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +G  ++L  L     L  G    G++G  +   + A+   I K       +
Sbjct: 323 MGKSLQLHALVILLALTAGTLLAGIVGAVLAVPITAVAWAIIKVWTTEDPQ 373


>gi|91774322|ref|YP_567014.1| hypothetical protein Mbur_2413 [Methanococcoides burtonii DSM 6242]
 gi|91713337|gb|ABE53264.1| protein of unknown function UPF0118 [Methanococcoides burtonii DSM
           6242]
          Length = 345

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 130/352 (36%), Gaps = 7/352 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +       +    I+ + +V  Y L  +    L A I+     P+Y     + +    
Sbjct: 1   MIKKRTVKLALALLSIIVLAVVLSYALLPYINAFLGAFILYVIFKPVYILLTERLKLKEN 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  +  M L ++P+ ++F   + E++ +++ +       I    ++          
Sbjct: 61  ISAILVMILSMILVVLPIYYMFTLIIGEIEMVITNI-------ITNLSYVDITNYFDIVK 113

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +   +   P          L +    ++ +             +S+I M   L++ +  
Sbjct: 114 NIDYINEIAPDIDIQGKIVTLISTLGSYLSKHLIGAVQNISGLLISVIIMFFLLYYLFTS 173

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +                  K+   +  +I ST +   +IA+ +G ++G  ++  G+  
Sbjct: 174 TNTNISNQLQDLIPFNKKNTNKLLTEIKNIIHSTLIATLLIAVLQGTIIGITFYAVGING 233

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                 +T +++ +P        A ++   +    + A  + L   I L  +D  LRP++
Sbjct: 234 VALWAAVTTVLSFLPVVGAPLVWAPAVLFKLITQDYVAAIVILVAGIILSNIDNVLRPYI 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                 +    +  G+  G+   GL+G+ +GP+L++   +I K       +N
Sbjct: 294 QKKVGAMHPFVSLLGIFVGIYLFGLVGIVVGPLLISSFLLILKMFNEEYIQN 345


>gi|75910067|ref|YP_324363.1| hypothetical protein Ava_3863 [Anabaena variabilis ATCC 29413]
 gi|75703792|gb|ABA23468.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 347

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/309 (10%), Positives = 95/309 (30%), Gaps = 11/309 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + I L  L+ ++     + +++++      +             +  +++   V+
Sbjct: 7   LGLLALVISLYILWEIRQLVLLLFTSVVLAVAINQLVLRLQ-LSGIKRIWAVLLSVGIVV 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +  LL +    + + ++L+  +            WL +     +  E+         
Sbjct: 66  TFLVGALLLILPPFIEQFRQLLVLLPTGINQIQQGINWLEERLVDSYLPEIPD------- 118

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I          +  + + A       +   L  + +I+       +     +     
Sbjct: 119 ---IDRLLEQIQPWVTRLTQQAIALFSTSVTALLETLLVIVLTLMLLANPQPYRRVFIRF 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             + +     +I       +    +G  I  +  G + G   W+  VP  +A  V+  ++
Sbjct: 176 FPNFYRHRVDEILTRCATGLGDWTIGALIEMLFIGTLSGLGLWILQVPLALAHAVLAGLL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P     + + +      + A  + +   +   +    L P ++   + L    
Sbjct: 236 NFIPNIGPTLSVFLPMAIAFLDAPWKAVAVLILYLVIQNVESYWLTPTIMAKQVALLPAV 295

Query: 312 TFFGLVGGV 320
           T    +  V
Sbjct: 296 TLTAQIVFV 304


>gi|209886510|ref|YP_002290367.1| putative domain of unknown function [Oligotropha carboxidovorans
           OM5]
 gi|209874706|gb|ACI94502.1| putative domain of unknown function [Oligotropha carboxidovorans
           OM5]
          Length = 365

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 57/346 (16%), Positives = 116/346 (33%), Gaps = 17/346 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++  I+  LY  +GFF PV++A+I+G    P      + +       A+I  ++ +
Sbjct: 34  LVALLVLSIVAVLYVARGFFLPVVTAVILGTMLSPAAKRLEALRIPRPVSAALIVVLTWI 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               +  L                     +    +P     +   +   +         Q
Sbjct: 94  AFVFIIGLISVPVV---------------EWFDKLPELGPILKNKLHVFDRPLAIWQQLQ 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L    E   +      +         +   +   ++F  + + F           + + 
Sbjct: 139 VLLGSPEGAEQPFQFPKVAWVQPTIEFLSPTFTEILLFFAVLVLFIASWPDLRRALVMNF 198

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +        +I   +   +    L +T+I  G G+  G A  LAG P+   LG + A +
Sbjct: 199 QDRDSRLRTLRILNAIETKLGGYLLTVTVINAGLGIATGLACALAGTPNPAGLGALAATL 258

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   PI    V + + I        A    L  A   F+    + P ++G  + L  
Sbjct: 259 NFIPIIGPILMFVVLLGVGIVAAPTLSGALVAPLAFAAFAFVEGHFVTPAIIGRRLALNA 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           L  F  L       G +G F+   L+ +  +I +  +   +++   
Sbjct: 319 LAVFLALAFWTWLWGPMGAFLSSPLLIVGLIIKEHMLPEREQSLPP 364


>gi|288933145|ref|YP_003437204.1| hypothetical protein Kvar_0261 [Klebsiella variicola At-22]
 gi|290511947|ref|ZP_06551315.1| inner membrane protein yhhT [Klebsiella sp. 1_1_55]
 gi|288887874|gb|ADC56192.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
 gi|289775737|gb|EFD83737.1| inner membrane protein yhhT [Klebsiella sp. 1_1_55]
          Length = 349

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 105/332 (31%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++        +L AL       P+ + FI +           A   
Sbjct: 13  ILLKLAALVIILAGIHAAADILVQLLLALFFAIVLNPLVTWFIRRGVRRP-----FAITL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+   +V L  L       + + V+ +   N+        L +    +       + L  
Sbjct: 68  VVTAMLVMLTALLGVLAASLNDFVAMLPDFNRALTRKILQLQEYLPFLNLHINPERMLRR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S ++++        +           M  +     +  +   L F   +       L 
Sbjct: 128 MDSERLMTWATTLMTQLSGAMASIVLLVMTVIFMLFEVRHLPYKLRFALNNPRLHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T+I++  GL++       GV   +  GV+  
Sbjct: 188 RAL----------------KGVTHYLALKTLISLWTGLIVWLGLLAMGVQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     +  L+   I+    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSAISAIPPMLQALLFSGIYECLLVGALFLVVHMVLGNMVEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|77405853|ref|ZP_00782936.1| membrane protein, putative [Streptococcus agalactiae H36B]
 gi|77175563|gb|EAO78349.1| membrane protein, putative [Streptococcus agalactiae H36B]
          Length = 377

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 105/330 (31%), Gaps = 13/330 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLL 79
             P L    I +    + S +                   +   +++  + + L +    
Sbjct: 39  IFPFLMGAGIAYIINIVMSVYERLYIKLFKGSRLLMAIKRSVSMILSYATFIGLIVWLFS 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +    +  +  L+     A    +        I   +         +S           
Sbjct: 99  IVIPDLISSLSSLLVIDTGALAKLVNNLNENKQISEALNYMGTDKDLVSTLSGYSQQILK 158

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            + +   + +    S      L+  +S IF I  L    + G   +  +D+         
Sbjct: 159 QVLSVLTNLLTS-VSSIAATLLNVFVSFIFSIYVLANKEQLGRQFNLLIDTYLG-STGKT 216

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +  +  I+ +     F+  T+ A+  G +      +   P  + +GV+ A  A+IP    
Sbjct: 217 FHYVRHILHQRFHGFFVSQTLEAMILGSLTVIGMLIFQFPYALTVGVLVAFTALIPVVGA 276

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +   L+   ++  A    L+  +        + P +VGG I LP +     +  G
Sbjct: 277 YIGVTIGFILIATESLTEAFLFVLFLILLQQFEGNVIYPKVVGGSIGLPSMWVLTAITIG 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               G+LG+ +   + A I  I K+ I+  
Sbjct: 337 GALWGILGMLLAVPVAATIYQIVKDHIIKR 366


>gi|163733660|ref|ZP_02141102.1| hypothetical protein RLO149_05093 [Roseobacter litoralis Och 149]
 gi|161392771|gb|EDQ17098.1| hypothetical protein RLO149_05093 [Roseobacter litoralis Och 149]
          Length = 378

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 108/329 (32%), Gaps = 14/329 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++L +L +   F  PV +A +  F                +     ++      + 
Sbjct: 29  IFCILLLQTLVWASDFLIPVTAAFLGYFVLNRPRRWLAK-----AGVAPAVSAGLFTAIL 83

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              ++ L         + +  +    +               +  + +  + +   Q  +
Sbjct: 84  AAFIVVLLVQLSAPAAQFIEDLPSLMEQIKEKLSASGGTLEAINDATVAAEEIIADQGAE 143

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGE 193
            ++   +   G+      A+    +   +   I+F +I LFF    G     + + S   
Sbjct: 144 TVAVEVVSNTGV------AATIFSMAPGFLSRILFALILLFFLVASGDMFLSKAVQSFER 197

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +   +     G+TII  G G+ +  A  L  +P  V LG +   +  
Sbjct: 198 FSDKRRAVEVLHAIEDRLGYYLGGITIINAGLGIAVAIAMSLWNLPGAVLLGFMAFGLNF 257

Query: 254 IPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P    ++   ++     +     + A  +F    +   I  + + P ++   ++L    
Sbjct: 258 VPFLGGLAGATIAAAIAFVSLDGTWAAAGVFGTYILLTSIEGQFITPVVISRRMRLNTTV 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            F  +        ++G+ +   ++ ++ +
Sbjct: 318 VFLSVAFFAWIWSVMGMVVALPILIVLKI 346


>gi|317471118|ref|ZP_07930490.1| hypothetical protein HMPREF1011_00838 [Anaerostipes sp. 3_2_56FAA]
 gi|316901432|gb|EFV23374.1| hypothetical protein HMPREF1011_00838 [Anaerostipes sp. 3_2_56FAA]
          Length = 255

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 78/242 (32%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +     +   G++ +EL     +      +     + T  I  +  F+  F     +  +
Sbjct: 3   LLDHYKESGSGVFPAELMETLETKSLPKLVQLSNQMLTEAIPMLYNFSVSFVKWLFNLFI 62

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +  I           +  + + ++  +          +    +     +G ++ ++  
Sbjct: 63  AFVVSIYMTADKQLLKSACRRLIFAVFPYDAAVPVIHGLKECHNIFSGYIIGKSLDSLII 122

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G +      L  +P  V + VI  +  MIP   P        ++L   + +         
Sbjct: 123 GFLCFLLMSLLNLPYTVLISVIVGVTNMIPYFGPFIGAVPGAFILFIVSPYKTLIFLGMI 182

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +        L P ++G    +  +   F +  G    G LG+F+G    A++  +    
Sbjct: 183 LVLQQFDGLVLGPKILGNSTGVRPILILFSITVGGAYFGPLGMFLGVPFFAVVQYLVNNW 242

Query: 346 IM 347
           + 
Sbjct: 243 VN 244


>gi|299146703|ref|ZP_07039771.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
 gi|298517194|gb|EFI41075.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
          Length = 341

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 140/351 (39%), Gaps = 20/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL I        +  + K++   +  A++ T 
Sbjct: 9   KYSLIVIILFMGVIIFRQITPFLGGLLGALTIYILVRGQMNHLVEKRKLKRSISALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F++PL    +    +++++             V  ++ +  G             
Sbjct: 69  ETIFVFLIPLGLTVWMVANKLQDINLDPQTYIAPIQQVAEFIKEKTGYDVL--------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +  +  +PR             +++  MI  L+F    G  +   +
Sbjct: 120 ---------GKDTLSFIMSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAYV 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T
Sbjct: 171 NDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLT 229

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L       
Sbjct: 230 CFATIIPMVGTALVWFPVATYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMADT 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L T FG+V G+   G +G+  GP+L++L  +          + +  + S
Sbjct: 290 HPLITIFGVVIGLPIFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPS 340


>gi|294056569|ref|YP_003550227.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615902|gb|ADE56057.1| protein of unknown function UPF0118 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 354

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 103/340 (30%), Gaps = 19/340 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   Q  +   I+  +   L+  +    P++ A+++ +    +  +  S          V
Sbjct: 1   MKLQQVALTLFIIVTVFFLLHVGQSLLQPLVIAIVVAYLISILAHAISSIPLGEWRVPKV 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ V  + + +  +  L       ++ ++       ++       +  + G         
Sbjct: 61  LSMVLAVGVILASISMLISLITENIRSVIGIAPGLQENLEARIYDVYALFGVEREEAPNL 120

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +                       +  +   FG    +       + + L F   +  + 
Sbjct: 121 QEFMAEID----------------LRAYLQDFGKTVRNIVSRTGIIFVYLVFVLLEQRTF 164

Query: 185 SQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++++ +L  +         +   + K IR       + +   GL+        GV     
Sbjct: 165 TRKIKALVPNKHRQEEVFTVIDRILKDIRLYIGIKVLTSASTGLLSYLVLKWIGVNFASF 224

Query: 244 LGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             V+  ++  IP    I  T     + L+            +       ++   + P L+
Sbjct: 225 WAVLIFLLNFIPTIGSIIATIFPSAMALIQFDTFRPFVICVIAITAIQLVIGSFIDPKLM 284

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           G  + L  L   F L       G+ G+F+      +I +I
Sbjct: 285 GNRLNLSPLVILFSLGLWGAVWGIPGMFLCVPFTVIIMII 324


>gi|152979543|ref|YP_001345172.1| hypothetical protein Asuc_1888 [Actinobacillus succinogenes 130Z]
 gi|150841266|gb|ABR75237.1| protein of unknown function UPF0118 [Actinobacillus succinogenes
           130Z]
          Length = 350

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 102/346 (29%), Gaps = 20/346 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +       ++    + II   +          L AL I     P+      ++     
Sbjct: 1   MTKPSSLLSYLVAMASLVIIFAGIKLSAEIVVQFLLALFISIVCSPVIKFMTYRRVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A   +  L  +   FL       ++E    +    +  +     +  +   +   
Sbjct: 59  ---WLAIALLFVLISLAFFFLVGLINGTVQEFSRSMPQYRELMLERLHSVQALAVRLHIP 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +             +    +    + +  FAS   + F +   S   +I+ + F   +
Sbjct: 116 FDF------------DASRIQQQFDPNVLMNFASHLLLNFSNVVSSAFVLILVVIFMLLE 163

Query: 181 GFSISQQLDSLGEHLFPAYWKK--ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +  ++L            ++      V + I S     T+++   G  +     L GV
Sbjct: 164 APTAKRKLAIAFSSNRREQNREEQHLDRVLQGIISYLGVKTLVSTLTGFCVWLLLELMGV 223

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLR 297
              V    ++ +   IP    I      I   L+         +         ++   L 
Sbjct: 224 QYAVLWATLSFLFNYIPNIGSIIAAIPIIVQTLLLNGFSVGFAVAAGVIAVNMVIGNVLE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P L+G  + L  L  F  L+     +G +G+ +   L     +  +
Sbjct: 284 PKLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMACKIALE 329


>gi|257439067|ref|ZP_05614822.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257198445|gb|EEU96729.1| conserved hypothetical protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 379

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 60/373 (16%), Positives = 124/373 (33%), Gaps = 22/373 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKK 55
              Q ++  ++   + V+L  L               P+L+  I+        +    + 
Sbjct: 4   KTKQYLLITVVGVTLFVALLRLSSVLTFAAQLVDLVLPILAGGILALFINVPMTGLEKRL 63

Query: 56  E------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
           +      +       +  +S     +  +L L     L + ELV                
Sbjct: 64  KRLFCKAKKQPSDKALHLLSFFITLLGVVLVLVLALTLLIPELVQSFHSLYVQIEANIPR 123

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            +       A   W          + L      T+ ID +   A       ++  ++  F
Sbjct: 124 WTAYLSAQDADMGWLMSWLEGIDWEQLLHR--VTDTIDTVLVNAVGAVSATVNIVVTASF 181

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR----STFLGMTIIAIGE 225
            +I   +      S+     +L                 ++ R    +   G    A+  
Sbjct: 182 ALIISVYMSVGSESLCHHARTLVCAYLKPSHSAWLLKFCRLFRQSFANFLTGQCSEAVIL 241

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G+++  A+ +  +P    +G++TAI A+IP    +    VS++L++  +   A    +  
Sbjct: 242 GVLMALAFSVFKIPYGSLVGMLTAICAIIPYVGALISCVVSVFLVLLVDPVLAVRCLIVY 301

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               FI ++ + P +VG  + L  L T    + G    G++G+     L A+I  + KE 
Sbjct: 302 LAVQFIENQFIYPRVVGKSVGLSPLYTLVAAMIGGELFGIIGIIFFIPLTAVIIELVKED 361

Query: 346 IMAIKENKEKISS 358
                + +E   S
Sbjct: 362 ACRRIQARESQRS 374


>gi|21244703|ref|NP_644285.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110393|gb|AAM38821.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 389

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 106/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    P++ A        PI      K        A++     +
Sbjct: 52  LVVLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGL-RKLYIPRFLGALLILCLGL 110

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     L       +++   ++    +    + + +                     
Sbjct: 111 AGTVTLAAQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGGEGQRG 170

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 171 VQIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 219

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + 
Sbjct: 220 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLQIPLPEAILWGTVV 279

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 280 ALLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 339

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 340 ISPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 375


>gi|309810430|ref|ZP_07704260.1| putative membrane protein [Dermacoccus sp. Ellin185]
 gi|308435613|gb|EFP59415.1| putative membrane protein [Dermacoccus sp. Ellin185]
          Length = 379

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 106/343 (30%), Gaps = 14/343 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   + +      +  L       ++ ++      PI S  + +     T  AVIA    
Sbjct: 28  LAIAVGVLAFFWGVTRLGVVTVSFVTGVMFAALLAPIVSWLVRRGVG-RTTSAVIAFFVG 86

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      + F+         E   ++             L++     W  +   K     
Sbjct: 87  VGSAAGLIAFVVAQIDDSSGEFARQL------------TLAEQGARHWLVDGPLKIDETS 134

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S          +N    I  +A+    I      +++  +    F   D  SI + +  
Sbjct: 135 ASRYTTDLGTTLSNHTADIVGWAAAHVGIVTGGLSALLLTLFCALFLLADDGSIWRWIVR 194

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L       +         + +      + ++A+     +    W A VP  V L V+  +
Sbjct: 195 LLPRGAHNHVDLAGAAAWRTLVVYMRSLVLLALLNAAAMLPVLWFADVPLAVPLTVVIFL 254

Query: 251 MAMIPGGAPISFTAVSI-YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            ++IP    +   A+      +   +  A  L     + + ++   + P ++G  + L  
Sbjct: 255 GSLIPLVGVLLAAALMFAIAFVGNGLVTALVLVAILTVLVQLLGNLVNPLILGRFVDLHP 314

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +    G+  G    G  G F    L+A++  + K       E 
Sbjct: 315 VVILIGVSAGTLLGGAFGAFTAVPLIAVVNNMVKVMRSYHLEE 357


>gi|238783747|ref|ZP_04627766.1| AI-2 transport protein tqsA [Yersinia bercovieri ATCC 43970]
 gi|238715298|gb|EEQ07291.1| AI-2 transport protein tqsA [Yersinia bercovieri ATCC 43970]
          Length = 332

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 101/339 (29%), Gaps = 22/339 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
              ++ +I+  +        P L A+ +     P+      K     T   V+    ++ 
Sbjct: 1   MLAMLVVIMAGIKAASPIVVPFLLAIFLAIVLNPLVKLLE-KIRIPRTLAIVLLVTLIIL 59

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  +    L        + L     +  +    +  +           ++          
Sbjct: 60  LMALLFSRLGSSLNEFARSLPQYRGMMLEKMRELQEFAMRFNIEFSVDDIMKHVDP---- 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                              F +R          S   +++ + F   +   +  ++  + 
Sbjct: 116 --------------STAVNFVTRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMF 161

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++  P     I +     +    +  T+I+I  G+V+       GV      G++  ++ 
Sbjct: 162 DN--PEQGNAILKRALNGVTHYLVIKTVISIATGIVIWLFLAAMGVRFAFLWGLLAFVLN 219

Query: 253 MIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP    +      I   L+     +A  +     +   I    + P ++G  + L  L 
Sbjct: 220 YIPNIGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLV 279

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F  L+     +G +G+ +   L  +  +  + +    K
Sbjct: 280 VFLSLIFWGWLLGPIGMLLSVPLTIIAKIALELTPAGYK 318


>gi|303246923|ref|ZP_07333199.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
 gi|302491630|gb|EFL51513.1| protein of unknown function UPF0118 [Desulfovibrio fructosovorans
           JJ]
          Length = 362

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 61/345 (17%), Positives = 122/345 (35%), Gaps = 4/345 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + +  I +    L  F   ++ AL++     P+        +      A I T+  
Sbjct: 17  FLLAIFLAAIAIMGTLLWPFRHAMVLALVLATLVHPLRRHLPRPVQTRRFLAATILTLLT 76

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   ++PL  L      E    +   +   + G                   W K     
Sbjct: 77  ILFVLLPLAGLVTLLTSEAVTFIHTTITWFRTGGLTEAV---AWIHALPLPNWAKGYLDV 133

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S+ +     L  +    I  +    G       L ++ +++ LF+   +G  +++ L  
Sbjct: 134 SSIDLRKIETLALSSGGDIGLWFLSAGKGVASMGLQLLVLVMFLFYLLAEGERLTELLRK 193

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L       I      V ++  LG    ++  G+V G   W+AG+   +   V    
Sbjct: 194 ASP-LRRDQEDAIIARFKAVSQAVLLGGLGTSVAIGVVTGIGLWIAGISPLLWGAVAVIA 252

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +   G  +      I L+  G++  A  L L+  + +  VD  +RP  + G  ++  +
Sbjct: 253 SLIPVVGLSLIMLPAIISLIATGSVKMAIFLALYWLLVVSSVDNVVRPLFMRGTARMSLV 312

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             F  ++GGV   G LGL  GP+ +++  +  +    A  E  + 
Sbjct: 313 WVFVSIIGGVLMFGPLGLLYGPLALSISFLFLEIFFDAQNEADDT 357


>gi|182414963|ref|YP_001820029.1| hypothetical protein Oter_3149 [Opitutus terrae PB90-1]
 gi|177842177|gb|ACB76429.1| protein of unknown function UPF0118 [Opitutus terrae PB90-1]
          Length = 396

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/357 (12%), Positives = 105/357 (29%), Gaps = 17/357 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +    + ++  ++ F      P+  A ++     P+      +         V+   +
Sbjct: 31  VALLVGAVIVLGRAISFFSSVLWPLAVAGVLALILRPLVEVLEHRLRLRRLTAVVVLYGA 90

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+      L+ +    + +    +S +    ++ +   R        +   +L       
Sbjct: 91  VVLALAGLLIAVLPPLIDQAVNFISYLPTLWENTLNYFRQHFPQWLDLIQRQLAKLPGVS 150

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRF-------------GMIFLDYCLSIIFMIIALFF 176
               +  +   L    I  +     +                +FL     I   +     
Sbjct: 151 GGEGEGSTLRDLSGALIKQLETVLRQAAPSLMAAGGGVLGVFVFLTNLAIIPVYLFFFLL 210

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              +      Q               + R    ++ + F G  +I +  G +L + + L 
Sbjct: 211 ARGEPADELPQHLVFLRPRVRDDVVFLVREFVAIVVAFFRGQLLIGLIMGALLATGFSLI 270

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVD 293
           G+   + LG++  ++ ++P    I   A+++ L      G       + L   I   I  
Sbjct: 271 GLRFGLILGLVLGLLNIVPYLGTIVGLAITLPLAFFQPDGGWHLIALVLLVVVIVQLIEG 330

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTM-GLLGLFIGPVLMALIAVIWKESIMAI 349
             L P ++G    L  +     +        G+LG+ +   L A     W+      
Sbjct: 331 WVLTPKIMGMQTGLHPVAIIVAVFFWGTAFGGVLGMLLAIPLTAFFVTAWRLVRRKY 387


>gi|160943147|ref|ZP_02090384.1| hypothetical protein FAEPRAM212_00632 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445616|gb|EDP22619.1| hypothetical protein FAEPRAM212_00632 [Faecalibacterium prausnitzii
           M21/2]
          Length = 447

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 126/372 (33%), Gaps = 22/372 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKK 55
              Q ++  ++   + V+L  L               P+L+  I+        +    + 
Sbjct: 78  KTKQSLLVTVVGVTLFVALLRLSDVLAFAAKLIDLVLPILAGGILALFINVPMTGLEKRL 137

Query: 56  E------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                  +       I  +S     +  +L L     L + ELV                
Sbjct: 138 NRLFGKAKKQPSAKAIHLLSFFITLLGVVLVLVLALTLLIPELVQSFHSLYVQIEANIPR 197

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            +       A   W  +     + + L      T  ID +   A       ++  ++  F
Sbjct: 198 WTAYLNAQDADMGWLMNWLEGINWEQLLHK--VTASIDTVLVNAVGAVSATVNIAITASF 255

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGE 225
            +I   +      S+  Q  +L              K  R+  +   +   G    A+  
Sbjct: 256 ALIISVYMSLSTESLGHQARTLVCAYLKPAHAAGVLKFCRLFRQSFANFLTGQCSEAVIL 315

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G+++  A+ +  +P    +GV+TAI A+IP    +    VS++L++  +   A    +  
Sbjct: 316 GVLMALAFSVFKIPYGSLVGVLTAICAIIPYVGALISCVVSVFLVLLVDPVLAVRCLIVY 375

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               F+ ++ + P +VG  + L  L T    + G +  G++G+     L A++  + KE 
Sbjct: 376 LAVQFVENQFIYPRVVGKSVGLSPLYTLIAAMIGGKLFGIIGIIFFIPLTAVVIELVKED 435

Query: 346 IMAIKENKEKIS 357
                  KE + 
Sbjct: 436 TFRRLRAKEPLQ 447


>gi|160915706|ref|ZP_02077914.1| hypothetical protein EUBDOL_01715 [Eubacterium dolichum DSM 3991]
 gi|158432182|gb|EDP10471.1| hypothetical protein EUBDOL_01715 [Eubacterium dolichum DSM 3991]
          Length = 347

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 110/341 (32%), Gaps = 3/341 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++     Q +    I+ ++ V  Y++   F P L    I +   PI   F          
Sbjct: 5   KQKQFVLQLLYYGSILALLYVLFYYVIPLFLPFLIGFAIAYILRPIVFRFTQ--GNHIRL 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            +        C   + L  +   G+L +++L+ ++    Q  I      SD+     + E
Sbjct: 63  YSTALLFLFYCFLALLLFIVALKGILLLQDLMEQLPAFYQQYIAPYLAQSDLQVSNLSKE 122

Query: 122 L-WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           L +   L         S     +          S+  +   +   ++   I++ FF   D
Sbjct: 123 LPFADILHSLLIQLQQSLASFLSKLTSSFLYTISKLMLSLPNILFAMFLSIVSSFFINAD 182

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I+  + S     +     + S++V   ++       I+ +   L L     L  V  
Sbjct: 183 YQGITTAITSKLPKAWRIKLLRTSKLVKTTLKQMAKAYGILLLCTFLQLWLGLVLLKVHK 242

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              +    A+  M+P            ++             L   + + I+   L P +
Sbjct: 243 AALIAFGIALFDMLPILGCGGILLPWAFVSYIAGSTKLAVGLLLLNLIIGIIRSILEPKI 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +   +      T   +  G +  G+ G+ + P +  LI  +
Sbjct: 303 LSSKLGQHPFVTLIAMYVGGKLFGICGMLLAPFVCMLIQKL 343


>gi|158424592|ref|YP_001525884.1| putative permease [Azorhizobium caulinodans ORS 571]
 gi|158331481|dbj|BAF88966.1| putative permease [Azorhizobium caulinodans ORS 571]
          Length = 351

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 98/324 (30%), Gaps = 18/324 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           + ++ + +        +A+++      +  +              +  + V  L  V   
Sbjct: 39  LFLAAWAISDVLLLAFAAILVAIGLHGLAGAVTRYTGCPPRAALAVVCLLVAGLLGVVAY 98

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                   +++EL  ++  A +                        HL       +    
Sbjct: 99  LFGNIISAQVRELFHRLPAAWETFQD------------------EFHLRGMVDDLMRRAE 140

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T     +            +  + I  +++   +F        + L SL        
Sbjct: 141 AAATPSGATVLSAVRGVTSNIANVLVGIFLIVVGGLYFAMQPHFYRRLLISLFPPQHQDA 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +    + + +R       I  I  GL+ G    + GVP+ +ALG+   +   +P   P
Sbjct: 201 AGRRVDGIGQSLRCFLQAQLIAMIVVGLLCGIGLAVLGVPAALALGLFAGLAEFVPMVGP 260

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +     ++ L +   +       L   +   +    + P L    + LP   T F +V  
Sbjct: 261 VMAAIPALLLALTVGMETTFYTLLLFLVVQQVESNIISPLLQQELVSLPAAVTLFSVVAF 320

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
              +G LGL +   L  L+  + +
Sbjct: 321 GTLLGPLGLLLATPLTVLVFALCR 344


>gi|297585066|ref|YP_003700846.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
 gi|297143523|gb|ADI00281.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
          Length = 394

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/347 (9%), Positives = 103/347 (29%), Gaps = 10/347 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            +  + +    I  + +     L     P + A ++ +   P+   F       +     
Sbjct: 19  FIVLRLLAVSAIGILAVWLTGLLFSLTYPFIIAAVLVWMFHPLIRFFRKMLRMPNMLAVF 78

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----------HGIPVPRWLSDIP 114
           +  +  +   I  +  +    +   + + + +    Q          +    P W     
Sbjct: 79  LTVLLGLSAVIGSITGIIALIVFGFRRISAFLPEWIQTTAIQAQDFFNQSIFPLWQQFSG 138

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                +      L +             TN    +    +   +    + +  +F+ IA 
Sbjct: 139 AVDSLTPEQQTTLQNGIERLGTQLAEGSTNIGQGMADGLASVIIFVPSFLIVFLFVFIAF 198

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +F  +D   +  +   +         +    +    +        I+     +V+     
Sbjct: 199 YFIGKDWDRMFSKAYEITPAFILKKARAFKTMFQYRVFGFVRAQLILMFIASIVVLIGLL 258

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  V   + + +I  I  ++P     +        ++     +              + +
Sbjct: 259 ILRVEHALTIAMIVGIAEILPYLGSGTILIPWFVYMLLTGEISMGIGLAVVYGVTVGIRQ 318

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           ++ P ++   + L  L     L  G +  G++G+F+GP ++ ++ + 
Sbjct: 319 SIEPKVLSSSMNLNALGVLISLFVGFQLFGVVGVFVGPFILVILVIF 365


>gi|160886195|ref|ZP_02067198.1| hypothetical protein BACOVA_04202 [Bacteroides ovatus ATCC 8483]
 gi|237723005|ref|ZP_04553486.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|260173678|ref|ZP_05760090.1| hypothetical protein BacD2_17520 [Bacteroides sp. D2]
 gi|315921940|ref|ZP_07918180.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108080|gb|EDO09825.1| hypothetical protein BACOVA_04202 [Bacteroides ovatus ATCC 8483]
 gi|229447527|gb|EEO53318.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|313695815|gb|EFS32650.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 341

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 67/351 (19%), Positives = 140/351 (39%), Gaps = 20/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL I        +  + K++   +  A++ T 
Sbjct: 9   KYSLIVIILFMGVIIFRQITPFLGGLLGALTIYILVRGQMNHLVEKRKLKRSISALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F++PL    +    +++++             V  ++ +  G             
Sbjct: 69  ETIFVFLIPLGLTVWMVANKLQDINLDPQTYIAPIQQVAEFIKEKTGYDVL--------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +  +  +PR             +++  MI  L+F    G  +   +
Sbjct: 120 ---------GKDTLSFIMSILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKMEAYV 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +         +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T
Sbjct: 171 NDILP-FNETNTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLT 229

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L       
Sbjct: 230 CFATIIPMVGTALVWFPVAAYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMADT 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L T FG+V G+   G +G+  GP+L++L  +          + +  + S
Sbjct: 290 HPLITIFGVVIGLPIFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPS 340


>gi|20091671|ref|NP_617746.1| hypothetical protein MA2846 [Methanosarcina acetivorans C2A]
 gi|19916842|gb|AAM06226.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 405

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 120/337 (35%), Gaps = 10/337 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   +I  + L +LY    FF  ++ + +  +   P+Y  F  +  +S    A+I   
Sbjct: 22  KVLYTVIISLVSLYTLYITSAFFYVLILSALFAYIIHPVY-FFCIRFVKSKQICALIPLG 80

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++  + +   + +    M E+  ++        + I     +           L   H  
Sbjct: 81  TIFLITLASGVMIVKALMNEISRILE-----IPNTINGFANMDLRRIVGLFEPLIQTHPG 135

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L T+ +  I     +         + +I +++  ++   +  +I+ +L
Sbjct: 136 KLTESIGAYLNSLVTDYVPQIQNNIFQISTGLSILIIELIVIVVLTYYLLVESETIATEL 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L               +  + ++ F+   +  +  G++ G  YW  GVP  +  G++T
Sbjct: 196 PNLFPD--RKVGVVFLGELNYIYQNLFIVYFLTCLITGIIGGVLYWALGVPYSLIWGILT 253

Query: 249 AIMAMIPGGAP--ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            IMA++P      +       Y+LI         +FL       I D  +RP        
Sbjct: 254 FIMALLPVVGAGTVYGLLALYYVLIDDFFTAGALIFLGIVFLSIIPDFIMRPRFARNRAA 313

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +    T       V  +G +G+ IGP+    +   ++
Sbjct: 314 IHPAITLVAFAAPVFVLGPIGIIIGPLTYGFLLAAFR 350


>gi|307692769|ref|ZP_07635006.1| hypothetical protein RbacD_07268 [Ruminococcaceae bacterium D16]
          Length = 386

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 108/335 (32%), Gaps = 2/335 (0%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L    AP ++ALI      P+          S    +++  V +  L    L  L Y   
Sbjct: 39  LLSLLAPFVAALITAAILHPVVRWLRDTLGGSRKLWSLLVLVLLFGLMGAALGGLVYAAG 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTN 144
            ++  LV        +   + + L  I    W        + +       +         
Sbjct: 99  AQLISLVQSWDDLLANLEGIFQQLEQIFARFWDLVPPALNETVDSVWDSVLEWLKNTLPG 158

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            ++ +  +A    +    + L++I  I+A +    D   +        +    A+  ++ 
Sbjct: 159 MLEGLVNYAKDKALSLPSFGLALIIYIMASYLLTADYPDLRTAAARRTDRRLLAFLIQVR 218

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                          ++++G   +L   +++   P  + L ++ A+M  IP     +   
Sbjct: 219 DTALAAFGGYLKAEFLLSVGVFFILLGGFFIIHQPYGLLLALVLAVMDFIPIIGAGTVMV 278

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
               + +           +     + +  +   P  VG    L  + +   +  G+R  G
Sbjct: 279 PWAVIDLFTGNLGGAIRLMVIWGLIALFRRVGEPKFVGDQTGLSPILSLVSIYVGMRLGG 338

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +LG+ +GP ++ +   + K  +        + +  
Sbjct: 339 VLGMILGPTVLLIALNLVKLGLFDGVRADAEAAVE 373


>gi|83949737|ref|ZP_00958470.1| hypothetical protein ISM_01545 [Roseovarius nubinhibens ISM]
 gi|83837636|gb|EAP76932.1| hypothetical protein ISM_01545 [Roseovarius nubinhibens ISM]
          Length = 351

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/358 (14%), Positives = 124/358 (34%), Gaps = 19/358 (5%)

Query: 1   MRETMLNPQGIMRWMIMF---IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR  M+    +   +++    +   +L      FAP++ AL+ G    P+          
Sbjct: 1   MRRYMMADPVVRVSLVLIATTLGFGALKLGADVFAPLVFALVTGVILAPLTEYLERLNVP 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           S     +I  +    + ++ +L   + +    ++  +  ++         +   L D+  
Sbjct: 61  SRISAFLILFLGCAFVVVLAVLIEPMIWQVADQLPRIRQEIRSWIAELRNLLSGLEDM-- 118

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                          +          +  G+D +P   +   +       ++IF+   LF
Sbjct: 119 -----------NKEVEQALGGDGQSKEKEGVDAVPDLTAALFLAPQIIAQALIFIGTLLF 167

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           F        S     +G+       ++    V +++   F+ ++ I  G GL +G+   L
Sbjct: 168 FLMTRKGIYSWLSRHIGDDEDTEVIQERFTTVERLVSQYFITISAINAGLGLAVGTVMTL 227

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDK 294
            G+P     G++  ++  +    PI+F    +   ++  +   +        +   I  +
Sbjct: 228 LGLPGGWLWGLVAFMVNFVLYVGPITFLLALLVTGVVVFDGVMSLAPAAAYLMINMIEAQ 287

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + P L+G  + +  L  F  LV  +   G +G  I   +   + V+      A +  
Sbjct: 288 FVTPALLGRYMSVNPLLIFVSLVFWLWLWGPIGAIIAIPVTVFVLVMLDIFHPAEEAE 345


>gi|257125219|ref|YP_003163333.1| hypothetical protein Lebu_0429 [Leptotrichia buccalis C-1013-b]
 gi|257049158|gb|ACV38342.1| protein of unknown function UPF0118 [Leptotrichia buccalis
           C-1013-b]
          Length = 371

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 96/336 (28%), Gaps = 33/336 (9%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----------------EESSTFLAVIA 66
           +  +     P + + +I +   P       KK                 + + TF  ++ 
Sbjct: 40  IRLVISTIFPFILSFVIVYCLMPFIDMISEKKEVAGFETDNKHKGKKKIKLNRTFAILLV 99

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
                 +F+  +L +      ++  L+  ++                         +   
Sbjct: 100 LSVFFIIFLYIILTIVPIITKQVSSLIDFLLKNQDKLQ----------------NNFFGF 143

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L         S    K   I    +       +       +    I          +I  
Sbjct: 144 LESNNIDLRSSLMSSKDIIISNAIKVLGSSFSLISSTFSLLFMTPIFTIMLIFSYDNIEN 203

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +     ++       + + + + I    L   + ++  G++    ++   +   +   V
Sbjct: 204 GVKRFFRNIGREDLIILIKNMDETIGKYILVTALDSMIVGIISFIIFYFLKMDYSMLFSV 263

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I     +IP   P      +I      +      + +   I   I    ++P+L G  ++
Sbjct: 264 IVGFGNVIPFIGPFIGLIPAILYAFTKSFKLVILIVVLITIVQTIEANIVKPWLTGKSVE 323

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  + T   ++ G    G+ G FI   +  +I + W
Sbjct: 324 MHPITTLLVVLIGGALFGISGAFIAIPVYIIIKLTW 359


>gi|260891172|ref|ZP_05902435.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
 gi|260859199|gb|EEX73699.1| conserved hypothetical protein [Leptotrichia hofstadii F0254]
          Length = 299

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 16/302 (5%)

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            K   + TF  ++       +F+  +L +      ++  L + ++   +           
Sbjct: 14  KKIRLNRTFAILLVLSIFFVIFLYIILTIVPIITRQVSSLTNFLLKNQEKLQ-------- 65

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                     +   L         S    K   +       S    +       +    I
Sbjct: 66  --------NNFFGFLESNNIDLRSSLMNSKDVIVSNAITVVSSSFSLISSTFSLLFMTPI 117

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                     +I   +  +  ++       + + + + I    L   + ++  G+V    
Sbjct: 118 FTIMLIFSYDNIENGVKRILRNMNREDIIVLVKHMDETIGKYILVTALDSMIVGIVSFVI 177

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           ++   +   +   +I     +IP   P      +I      +      + +   I   I 
Sbjct: 178 FYFLKMDYSMLFSIIVGFGNVIPFIGPFIGLIPAILYAFTKSFKLVILIVVLITIVQTIE 237

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              ++P+L G  +++  + T   ++ G    G+ G F+   +  +I + W        E 
Sbjct: 238 ANIVKPWLTGKSVEMHPITTLLVVLVGGALFGIGGAFVAIPVYIVIKLTWLFCWKKYMEK 297

Query: 353 KE 354
            E
Sbjct: 298 NE 299


>gi|188535406|ref|YP_001909203.1| Putative inner membrane protein YhhT [Erwinia tasmaniensis Et1/99]
 gi|188030448|emb|CAO98342.1| Putative inner membrane protein YhhT [Erwinia tasmaniensis Et1/99]
          Length = 353

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 113/337 (33%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++   + +IL  +        P L AL       P+ S  I +          +  
Sbjct: 11  QNILLKLATLVVILAGIKLSAEIVVPFLLALFFAIVINPLVSVLIRR-GVRRGMAIALVM 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ L  +  + +      +  E+  ++   +   +   + L+                
Sbjct: 70  VVMLLLLTLVGIMVAGSL-QQFSEVYPQLQAQSAQKLGTLQHLAARFH------------ 116

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L I S + ++      +   A+     F      ++ +I+ + F   +   +  +
Sbjct: 117 -----LNISSSSLVQRLDPGAMMDVATTMLKQFSGVMTQLVLVIMTVIFMLIEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      + P           K +        +I++  G+++  A    G+   +  G++
Sbjct: 172 LRYAL--INPQIHIAGLHKALKGVTHYLALKALISLITGVLVWLALLALGIKFALLWGIV 229

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  IP   P ++     +  L+     +A  +         ++   L P +VG  + 
Sbjct: 230 AFVLNFIPNIGPVLAGIPPILQALLLNTPLDAGLVAALFVSIHMLLGNLLEPRIVGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 290 LSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVSKILME 326


>gi|116626053|ref|YP_828209.1| hypothetical protein Acid_7011 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229215|gb|ABJ87924.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 393

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 111/364 (30%), Gaps = 35/364 (9%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +  +   +I+  LYF + FF   L AL I F   P  +  +  +   S    V+ +
Sbjct: 19  RNVALPILAAGVIIAVLYFGRLFFITSLIALTIAFILEPFVALLMRIRFPRSLASFVVCS 78

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V++  L+++ L         ++  L  ++    Q    +   +     GM          
Sbjct: 79  VALALLYVIALG-----AYSQLSGLYDELPKYGQRIADLVDNVQQKISGMEDQTYKILVP 133

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRF-----------------------------GM 158
           +  +  +       +                                             
Sbjct: 134 ARQRLEEERRRQQEQFASASKKSGKKGAAAAVPPPVPGAIPEVRIHEESTPISDYLLRLS 193

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
                 L   F+   ++F       +++               +  + +  ++R+  +G 
Sbjct: 194 GLYHVLLMASFIPFLVYFMLSWRDHLNRSFLQFFHGEDRLIAARSMQGIADMVRAFVVGN 253

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFN 277
            ++ +   ++    +W+  VP    +G ++  M+++P    P++        L    +  
Sbjct: 254 FVLGLMLAMISSVLFWILHVPYPALVGPLSGFMSLVPYIGLPLAMIPPLFAALPVNTVST 313

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              + +  A+   I    L P +VG  + L  L   F L+         GL +   L A 
Sbjct: 314 YVLVVVTVALLHLIALNVLYPKIVGSRVHLNPLIVTFSLMIWGFLWDAPGLLLAIPLTAG 373

Query: 338 IAVI 341
           +  +
Sbjct: 374 LKAV 377


>gi|31792294|ref|NP_854787.1| hypothetical protein Mb1131c [Mycobacterium bovis AF2122/97]
 gi|31617882|emb|CAD93992.1| CONSERVED MEMBRANE PROTEIN [Mycobacterium bovis AF2122/97]
          Length = 342

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 108/310 (34%), Gaps = 5/310 (1%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V    + 
Sbjct: 1   MFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRT 58

Query: 103 G-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +                 +   H++        +   +  N  +++  F         
Sbjct: 59  TDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLHFLRDAAGSLA 118

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
               S I  +        +   +   +  L   L         + +  ++R T  G  +I
Sbjct: 119 GVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFVI 177

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           A  +G+   ++ ++AG      +  I    +++IP G  I      I ++  GNI     
Sbjct: 178 AACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIF 237

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI  
Sbjct: 238 VLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIVT 297

Query: 341 IWKESIMAIK 350
                +   K
Sbjct: 298 TIDVYLAVYK 307


>gi|326800764|ref|YP_004318583.1| hypothetical protein Sph21_3375 [Sphingobacterium sp. 21]
 gi|326551528|gb|ADZ79913.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 372

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 113/314 (35%), Gaps = 14/314 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             AP++   +      P+ +      +   +  +++++++++ L       L        
Sbjct: 32  ILAPLILGFLCSVLLLPLANLLERNFQMPRSVSSLLSSIALVILIGAVFTLLGTQLSSLA 91

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +  +      +    +  W+SD       +++                    +  +   
Sbjct: 92  NDWPAFKQQLLKSAADLQFWISDTFHVNNKAQI-------------DYINQAASKSLSTG 138

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               S+  M      L ++F  +  FF       I + L +  +        +I   +  
Sbjct: 139 TTLLSKTLMSLSSLFLLLLFSFLYTFFILFHRRLIVRFLVNSFKENHSPVVYEIVYQIQY 198

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           +I+   +G+ +  +   ++   A++  GV     LG+IT I  +IP     +   +++ +
Sbjct: 199 IIKRYVVGLFLQMLIVTILACLAFYFIGVKYSFLLGLITGIFNIIPYVGIFTALVITVLI 258

Query: 270 -LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                   N   + +   +   +    + P +VG  +++  L    GLV G    G+ G+
Sbjct: 259 TFATSTATNVLFVVIALVVIHAVDGNYIMPKIVGSKVQINTLIALIGLVLGEMLWGITGM 318

Query: 329 FIGPVLMALIAVIW 342
           F+   ++A++ V++
Sbjct: 319 FLSIPIIAIMKVVF 332


>gi|221134975|ref|ZP_03561278.1| hypothetical protein GHTCC_08591 [Glaciecola sp. HTCC2999]
          Length = 357

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 106/341 (31%), Gaps = 22/341 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++    + ++L  +        P L ++ I     P+ +     K     
Sbjct: 1   MELKSSTAKVMVITAAVIVVLAGIKAASAIMVPFLLSIFIAIACSPLINHASRYKIPR-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I+   V+ L IV    L       + E    +            W+ +    +   
Sbjct: 59  ---WISVTLVILLIIVFGFMLAGLVGQSLGEFRQNLPNYQSQLSVEFAWVIEQLAKVNVI 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 LS+                       A+ F         ++  +I+ + F   +
Sbjct: 116 VDKNLFLSYFD--------------PAVAMSVATNFLSGMGGVLSNVFLIILTVIFMLFE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             S+ +++        P    +      K +       +++++G G+ +G   ++  VP 
Sbjct: 162 AESMPRRIHVALRD--PGMKMQHIDRFLKSVNDYLAIKSLVSLGTGVFIGVWLFVLDVPH 219

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+  ++  IP    I       +   +   +  A    L   I   ++   + P 
Sbjct: 220 FMLWAVLAFLLNFIPNIGSIIAAVPAVLIAFVDQGLATAGLAGLGFIIVNTVMGNMIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +G  + L  L  F  L+     +G +G+ +   L  ++ +
Sbjct: 280 FMGRGLGLSTLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKI 320


>gi|206577122|ref|YP_002236155.1| hypothetical protein KPK_0272 [Klebsiella pneumoniae 342]
 gi|206566180|gb|ACI07956.1| putative membrane protein [Klebsiella pneumoniae 342]
          Length = 349

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 105/332 (31%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++        +L AL       P+ + FI +           A   
Sbjct: 13  ILLKLAALVIILAGIHAAADILVQLLLALFFAIVLNPLVTWFIRRGVRRP-----FAITL 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+   +V L  L       + + V+ +   N+        L +    +       + L  
Sbjct: 68  VVTAMLVMLTALLGVLAASLNDFVAMLPDFNRALTRKILQLQEYLPFLNLHINPERMLRR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S ++++        +           M  +     +  +   L F   +       L 
Sbjct: 128 MDSERLMTWATTLMTQLSGAMASIVLLVMTVIFMLFEVRHLPYKLRFALNNPRLHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T+I++  GL++       GV   +  GV+  
Sbjct: 188 RAL----------------KGVTHYLALKTLISLWTGLIVWLGLLAMGVQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     +  L+   I+    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSAISAIPPMLQALLFSGIYECLLVGALFLVVHMVLGNMVEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 ALVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|16762722|ref|NP_458339.1| hypothetical protein STY4229 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144209|ref|NP_807551.1| hypothetical protein t3940 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56415481|ref|YP_152556.1| hypothetical protein SPA3433 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167549199|ref|ZP_02342958.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168232730|ref|ZP_02657788.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168235177|ref|ZP_02660235.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168241735|ref|ZP_02666667.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449282|ref|YP_002047607.1| hypothetical protein SeHA_C3894 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194468597|ref|ZP_03074581.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194738241|ref|YP_002116517.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197248277|ref|YP_002148505.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197262488|ref|ZP_03162562.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197364409|ref|YP_002144046.1| hypothetical protein SSPA3205 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200387428|ref|ZP_03214040.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204928771|ref|ZP_03219970.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213053192|ref|ZP_03346070.1| hypothetical protein Salmoneentericaenterica_09837 [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213426822|ref|ZP_03359572.1| hypothetical protein SentesTyphi_15170 [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582950|ref|ZP_03364776.1| hypothetical protein SentesTyph_17763 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213648251|ref|ZP_03378304.1| hypothetical protein SentesTy_13729 [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213859386|ref|ZP_03385090.1| hypothetical protein SentesT_23780 [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238910417|ref|ZP_04654254.1| hypothetical protein SentesTe_04669 [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824350|ref|ZP_06543943.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325143|pir||AD0990 probable membrane protein STY4229 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505028|emb|CAD08048.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29139846|gb|AAO71411.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56129738|gb|AAV79244.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194407586|gb|ACF67805.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194454961|gb|EDX43800.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194713743|gb|ACF92964.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197095886|emb|CAR61461.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197211980|gb|ACH49377.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197240743|gb|EDY23363.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197291605|gb|EDY30957.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|199604526|gb|EDZ03071.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204322204|gb|EDZ07402.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205325703|gb|EDZ13542.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205333168|gb|EDZ19932.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205338746|gb|EDZ25510.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|322614052|gb|EFY10988.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617944|gb|EFY14837.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625442|gb|EFY22268.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629907|gb|EFY26680.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632204|gb|EFY28955.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636445|gb|EFY33152.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643106|gb|EFY39680.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644699|gb|EFY41235.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651279|gb|EFY47663.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652808|gb|EFY49147.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659110|gb|EFY55362.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663188|gb|EFY59392.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668675|gb|EFY64828.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674521|gb|EFY70614.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678273|gb|EFY74334.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682470|gb|EFY78491.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684183|gb|EFY80189.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192261|gb|EFZ77493.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196312|gb|EFZ81464.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201886|gb|EFZ86949.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206429|gb|EFZ91390.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212022|gb|EFZ96849.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216927|gb|EGA01650.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222327|gb|EGA06710.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224341|gb|EGA08630.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228269|gb|EGA12400.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233463|gb|EGA17556.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237075|gb|EGA21142.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243710|gb|EGA27726.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246048|gb|EGA30035.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250824|gb|EGA34702.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257680|gb|EGA41366.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261889|gb|EGA45456.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323267719|gb|EGA51201.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268599|gb|EGA52066.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 349

 Score =  101 bits (253), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 108/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVIILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L  +   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMDIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|121637032|ref|YP_977255.1| hypothetical protein BCG_1161c [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224989505|ref|YP_002644192.1| hypothetical protein JTY_1134 [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260186029|ref|ZP_05763503.1| hypothetical protein MtubCP_08383 [Mycobacterium tuberculosis
           CPHL_A]
 gi|121492679|emb|CAL71148.1| Conserved membrane protein [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772618|dbj|BAH25424.1| hypothetical protein JTY_1134 [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 342

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 54/310 (17%), Positives = 108/310 (34%), Gaps = 5/310 (1%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V    + 
Sbjct: 1   MFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVRT 58

Query: 103 G-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +                 +   H++        +   +  N  +++  F         
Sbjct: 59  TDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLHFLRDAAGSLA 118

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
               S I  +        +   +   +  L   L         + +  ++R T  G  +I
Sbjct: 119 GVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFVI 177

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           A  +G+   ++ ++AG      +  I    +++IP G  I      I ++  GNI     
Sbjct: 178 AACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAGGIF 237

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI  
Sbjct: 238 VLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIVT 297

Query: 341 IWKESIMAIK 350
                +   K
Sbjct: 298 TIDVYLAVYK 307


>gi|134103784|ref|YP_001109445.1| hypothetical protein SACE_7364 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005758|ref|ZP_06563731.1| hypothetical protein SeryN2_14654 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916407|emb|CAM06520.1| protein of unknown function UPF0118 [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 392

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 105/336 (31%), Gaps = 10/336 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    ++++ + +  L     PV  AL++     P   +    +         +  V
Sbjct: 29  RLLVILGALYVLGMIVSRLFVVVIPVAIALLLAALLAPAVGTLARYRV-PRALSTAVVLV 87

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +    L F+    +    +L ++VVL+                      L  + ++
Sbjct: 88  GGLGVVGGVLTFVINAFIEGFPQLQAQVVLSLNGIRDWL--------STGPLHLNDQQIT 139

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                        +      +          F ++   ++  +  L FF  DG  +   +
Sbjct: 140 TYVEQAEEWLKNNQATLTQGVTSGVLTTAGTFGNFLTGLLLALFTLIFFLYDGRRVWLFV 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +          +        +        ++A+ + L +       GVP  V L  + 
Sbjct: 200 IRIVPAENRDRIDRAGSRGFASLVGYVRATALVAVVDALGIWIGLVAVGVPLAVPLAALV 259

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   +P    ++      +  L+      A  +         I    L+P L+G  ++L
Sbjct: 260 FLGGFVPIVGAVASGAVAVLVALVTNGWIAALIVLGVVLAVQQIEGNVLQPLLLGRAVQL 319

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     +  GV   G++G  +   L+A++    +
Sbjct: 320 HALAVVLAISVGVVISGIIGALLAVPLVAVLNSAIR 355


>gi|77164943|ref|YP_343468.1| hypothetical protein Noc_1450 [Nitrosococcus oceani ATCC 19707]
 gi|254433254|ref|ZP_05046762.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
 gi|76883257|gb|ABA57938.1| Protein of unknown function UPF0118 [Nitrosococcus oceani ATCC
           19707]
 gi|207089587|gb|EDZ66858.1| conserved domain protein, putative [Nitrosococcus oceani AFC27]
          Length = 350

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 94/334 (28%), Gaps = 16/334 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            +  I L    +       V + +++             +   S  +   +    +    
Sbjct: 23  AVAIIFLFFAGYFAHLLLLVFAGILLAVFLRGTAGWLSDRVPLSMGWALTLVVFLLFYCM 82

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L L         +L   +  A +      +                   +    L 
Sbjct: 83  VIGALLLGPTIANNFNDLAQIIPQAVEQLREFVKRHE----------------AADGLLD 126

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +          +    +      L    S + +     +F  +     + +  L   
Sbjct: 127 RFLQQDKSVFLTQEMFTRIAGVFSSLLGLAASFLIIFANGLYFSVEPNVYIRGVIYLFPK 186

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              A ++ +   +  V+R   +G        G++        G+PS  AL  + A+++ I
Sbjct: 187 RKQARFRAVLSELGHVLRWWLVGRIASMAVVGVLTWGGLLWLGIPSAAALAFLAAVLSFI 246

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P   P+     ++ +       +A  + L   I   +    + P +    I LP      
Sbjct: 247 PNIGPLVSVVPAVLVGWMQGPMSALYVILLYTIIQTLESYLITPLIQRRAIMLPPALILT 306

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             +      G+ G+ +      +I V+ +   + 
Sbjct: 307 VQLAMGMAFGVFGVLLATPFAVVILVLVQMLYVE 340


>gi|298209195|ref|YP_003717374.1| permease [Croceibacter atlanticus HTCC2559]
 gi|83849122|gb|EAP86991.1| permease [Croceibacter atlanticus HTCC2559]
          Length = 362

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 112/335 (33%), Gaps = 18/335 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + ++     +  A ++     P       K +  +    +I  V  + +FI  +L     
Sbjct: 28  WEIQSVIIYIGIAAVLSLIGRPAVLFMRHKLKLPNLVAVIIVLVIFLSIFIGLILLFVPI 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + + + L           I +  + +D+         +                F+K  
Sbjct: 88  IVEQSQNLSQ---------IDIDAFRTDLNDLNRQINEFLGVNQINIVEGFKQSDFVKNF 138

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +P+F +          + +  +I   FF  +D   +   + +         +K++ 
Sbjct: 139 EITSVPKFLNNVFGSLGSGLIGLFSIIFISFFLLKDSKLLLNSVLAFSNRGDEDRFKRVF 198

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  ++   F+G+T       L+        G+ + +A+  I A + +IP   P     
Sbjct: 199 HTIKILLSRYFVGLTFQITILFLLYAIILMSFGIDNAIAIAFICAFLNLIPYLGPTIAGV 258

Query: 265 VSIYLLIKGNIFNATCLFL---------WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           + +  +I  N+ +     +                + +   +P + G  ++   L  F  
Sbjct: 259 LMMMFVISSNLGSNFSAIILPKLIKVGSLYIACQILDNFIFQPLIFGKSVRSHPLEIFLV 318

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++      G+LG+ +       + VI KES+   K
Sbjct: 319 ILIAGLVFGVLGMVVAVPAYTALKVIAKESLGEYK 353


>gi|152996401|ref|YP_001341236.1| hypothetical protein Mmwyl1_2379 [Marinomonas sp. MWYL1]
 gi|150837325|gb|ABR71301.1| protein of unknown function UPF0118 [Marinomonas sp. MWYL1]
          Length = 345

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/345 (11%), Positives = 109/345 (31%), Gaps = 22/345 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E       ++ +    II+ +L        P + ++ I     P  +S   ++   + 
Sbjct: 1   MSEQHKGIHWLVGFAAFVIIIAALKEASQIVVPFMLSVFIAIICAPAMASL-RRRNVPTW 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  + ++       + +         EL +      +    + + ++ +   +   
Sbjct: 60  LSILLVVLVILVGISSIAVLVGASLDNFSNELPTYKKRFGEEMSSLIQMINRLGLHVSYD 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++                    +  +  +       G    +  L ++ +I  LF     
Sbjct: 120 QVKGYIDP--------------SALMQMVANALRGLGSALTNLVLVVMIVIFILFEAVEL 165

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +S            +          K +    +  T++++  G+++    W+ GV  
Sbjct: 166 PKKLSLAF------SDASKSMDKFDSFIKSVNRYLVIKTLLSMLTGVLITFFMWVLGVDF 219

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV   ++  +P    I       +   ++    +A  +     +   IV   + P 
Sbjct: 220 PILWGVCAFLLNFVPNIGSIIAAVPAVLLAFVQLGSLSAGLVAGVFLVVNLIVGNVIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +G  + L  L  F  L+      G +G+ +   L  ++ + ++ 
Sbjct: 280 YMGRGLGLSTLVVFLSLLLWGWVFGPVGMLLSIPLTIIMKLAFEA 324


>gi|218439721|ref|YP_002378050.1| hypothetical protein PCC7424_2772 [Cyanothece sp. PCC 7424]
 gi|218172449|gb|ACK71182.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 353

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/345 (15%), Positives = 124/345 (35%), Gaps = 19/345 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLY----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
            L+   ++R++++F    +L     + +        A I+ F                  
Sbjct: 16  FLSTNNLVRFLLLFASGWALITFLDYFQDILFIFSVAGILAFCLNYPVHYLERYLG--KG 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I     + + I  L  L      ++++L   ++   ++          I   +   
Sbjct: 74  LARGIVIFLSLLVVIGGLAALIVIAFFQLQQLFDSLIQNLENIYNSAPSWQKIQNFLIQR 133

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +         ++     + L +               +  +  L +IF+++  FF   +
Sbjct: 134 NIDIDLRPFIDNITSEISSGLISFLN---------LLTLLPNTFLGLIFILVISFFMLTN 184

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +      L         +K    + K     F G  I+ +   L+   A+ L  +P+
Sbjct: 185 GERLWDLFLLLVPQQERKKVEKA---IQKSFIGFFRGQLILCLSLSLLSFLAFLLLQIPN 241

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             AL +I AI+  IPG    +    +S+  +++G   +A  + +   I   I D  + P 
Sbjct: 242 AAALAIIVAILDTIPGIGATLGVIVISLITIVQGGWIDAIKVVIISIILQQIQDNYIAPK 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++G  + L  +  FF L+ G +  G++G+F+   +  +I  + + 
Sbjct: 302 VMGNTVNLNPVIVFFALMVGAKIAGIIGIFLSIPVAGVIVSLLEI 346


>gi|17227738|ref|NP_484286.1| hypothetical protein alr0242 [Nostoc sp. PCC 7120]
 gi|17135220|dbj|BAB77766.1| alr0242 [Nostoc sp. PCC 7120]
          Length = 345

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 118/345 (34%), Gaps = 21/345 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
             LN   ++R++++     +    L + +        A I+ F           ++    
Sbjct: 11  HRLNNLALVRFLLLVAAGWAIVQLLAYFETVIIIFTFAAILAFLLSYPVQWL--RRFLPH 68

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +   V+  +  + +    L+ +    + + ++L+  +       +P    +  +      
Sbjct: 69  SVAVVVVFLISIVILGGLLITVGVALLSQGQQLIDSISAFLTSLLPFLERIERLLSNRNL 128

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               +      ++  + +          F+  F +   +  + +            F   
Sbjct: 129 QIDLSVIQEQLRTQAVSTLVTSLAIVQQFLTNFVTFILIAVVAF------------FMLL 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +   +  +        +  I   + +     F G  ++ +         + L  VP
Sbjct: 177 DGEKLWNFILKIVPQKRRIRFTNI---MRRSFLGFFRGQLLLCLFLTSSTFIIFLLLQVP 233

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L VI  I+ +IPG            +++  +++ A  +     +   I D  + P 
Sbjct: 234 FALILSVIVGILDIIPGIGATLGVGTITLIVLSQDVWLALKVLAACVVLQQIQDNLISPR 293

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++ G + L  +  FF L+ G R  GLLG+FI   +  +I  +++ 
Sbjct: 294 IMQGSLNLNPVVVFFALLVGARVAGLLGVFISIPITGVIVSLFEI 338


>gi|294140385|ref|YP_003556363.1| hypothetical protein SVI_1614 [Shewanella violacea DSS12]
 gi|293326854|dbj|BAJ01585.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 367

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 104/336 (30%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G      + +IL  +        P + +  I     P+  +    K   S      A +
Sbjct: 18  KGFAIMAFIVVILAGIKTASPIVVPFVLSAFIAVICNPVIGAMTRFKVPRS-----FAVL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M   ++  L+L       + E  +++       +    W+      +       + L+
Sbjct: 73  ILMVFIVMMGLWLAQIVGSSINEFSNQLPQYRDQLVDQFGWIVQKLQALNIIITKEQILA 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      LS T     G+  +        +  +        +   L F   D     QQ+
Sbjct: 133 YFDPGIALSMTTNMLTGVGGVMANLFLIILTVVFMLFESQTLPKKLHFALDDPEMRMQQI 192

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                     +    +  T++++  G+V+G    + GV   +   VI 
Sbjct: 193 DKFL----------------HSVNQYMVIKTLVSLATGVVVGFGLAIIGVDYVLLWAVIA 236

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     S+ L         A    L       ++   + P  +G  + L
Sbjct: 237 FLFNYIPNIGSIIAAIPSVLLAFIQLGPAAAGATALLYLGTNMVMGNLIEPRYMGKGLGL 296

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 297 STLVVFLSLIFWGWLLGSVGMLLSVPLTMIVKIALE 332


>gi|161505877|ref|YP_001572989.1| hypothetical protein SARI_04054 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867224|gb|ABX23847.1| hypothetical protein SARI_04054 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 349

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 108/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGMKRP-----LAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRRVLHLQELMPFLNLHMSPERMLRG 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L  +   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMDIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGNIMEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|295098896|emb|CBK87985.1| Predicted permease [Eubacterium cylindroides T2-87]
          Length = 392

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 109/342 (31%), Gaps = 24/342 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILV-------SLYFLKGFFAPVLSALIIGFTSWPIYSSFISK- 54
           + +L  + I+  +++ ++++        L ++     P L    + F    I ++ +   
Sbjct: 11  KEVLYRRVILFAVVLLMVVLYFEKILQVLLYILSICMPFLFGGGLAFVFNIIANNLMRAG 70

Query: 55  --------KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG--- 103
                   ++       +++ V V+ LF+  +  L       ++ +++ +          
Sbjct: 71  NILFKIEERKIYRVIANILSIVIVLALFLGFVFLLVPQIFASLETIINNLPETLNSFYHW 130

Query: 104 -----IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
                  +P   + I G       +    +          +    N    + +  S    
Sbjct: 131 AYRTSSSIPSLHNWIQGLDLNVLDFDNLSNWFNDFINWIFSGGANNIFGSVYQVISTTFS 190

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           I L   ++++F II LF            L +            + R++ +       G 
Sbjct: 191 IVLSTFVALMFSIIVLFNKSTVVKESKGLLRAYMPDDIYEKTLHVLRLIARTFTQYIGGT 250

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
               I  G ++     L  +P    +G+I  + A++P    +    +    +   ++ +A
Sbjct: 251 CTECIILGTLVTVGATLLNIPYATLVGIIVGVGALVPMFGALIAAIIGALFVATESVQSA 310

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +       +    + P +VG  +  P +     +  G 
Sbjct: 311 VYFMIMFICIQQVEGNFIYPNVVGRSVGFPPMYVIVAVTVGA 352


>gi|261418450|ref|YP_003252132.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|319767590|ref|YP_004133091.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
 gi|261374907|gb|ACX77650.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|317112456|gb|ADU94948.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
          Length = 341

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 112/337 (33%), Gaps = 2/337 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RWMI+ ++     +L  +  P+L AL       P         +              + 
Sbjct: 3   RWMIIALLFAVGLWLVPYSVPLLFALATALLLEPSIRRLQENYKLKRAHAVTAIFSLFII 62

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  + L FL    + ++  L  K+         V   L        +S       S  + 
Sbjct: 63  ILGLSLYFLVVIFVQQVMALSQKLPYVLNEATKVLDRLIQTWQSYSSSIPQEIIDSLERG 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +  + +  L  +    + +    +      + +  +  +IALF    D   + Q +    
Sbjct: 123 VNTVEQMLL--SFATNLTQSLVHYIAAIPAFLIHFLVYLIALFLICLDLPQLKQGMRRYL 180

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   + K          ++++    +  S  ++ GV     + ++  ++ 
Sbjct: 181 SERTEQRLGMVVAQLSKAGIGFLKAQFLLSLITFFLALSGLFVLGVDYAALMALVIVVVD 240

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P     S       + +           +   + + +V + + P +    + +  L  
Sbjct: 241 ILPILGTGSVLVPWGLISMANGNNTLGIGLIVLFVVITVVRRIIEPKVFSTNLGISPLAA 300

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              +  G + +G +GLF+GPV++ L+  + K  ++  
Sbjct: 301 LVSVYLGFQLLGFIGLFVGPVVVILVEALAKAGVIKW 337


>gi|120436003|ref|YP_861689.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117578153|emb|CAL66622.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 362

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/351 (13%), Positives = 123/351 (35%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   + + ++L  L+ ++     +  A +I     PI     +K    +    +   +
Sbjct: 12  RAIGIMIGILLLLYFLWEIQSVIVYIAVAGVIALVGRPIVIFLRNKLRLPNQLAVITVLI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +F+  +       + + K L           I +  + +D+         +     
Sbjct: 72  LVLAIFVGIIFVFVPIVIEQSKYLGQ---------IDIEAFKNDLNDLNQQVNKYLGVEE 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +    F++   +  IP+F +    I     +++  ++   FFF +D   +   +
Sbjct: 123 INIIEGLKRSEFIRNFDVSLIPQFLNNVFGILGATLIAVFSILFISFFFLKDSKLMLNSI 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                      ++++   +  ++   F+G+T+      ++      +  + + +A+  I 
Sbjct: 183 LVFANRGDEQKFQRVFNKIKVLLSRYFVGLTMQIAVLFILYTILLSVFEINNPIAIAFIC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFN---------ATCLFLWGAIELFIVDKTLRPF 299
           A + ++P   P+    +    +I   +              + L   I   I +   +P 
Sbjct: 243 AFLNLVPYLGPLLAGILMALFVISSFLGADFSSIILPRLIYVMLGYGICQLIDNFISQPM 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  ++      G+ G+ +       + VI KES+   K
Sbjct: 303 IFGASVKSHPLEIFLIILIAGLMFGITGMVVAVPFYTALKVIAKESLSEYK 353


>gi|56421067|ref|YP_148385.1| hypothetical protein GK2532 [Geobacillus kaustophilus HTA426]
 gi|56380909|dbj|BAD76817.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 341

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 113/337 (33%), Gaps = 2/337 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RW+I+ ++     +L  +  P+L AL       P         +        +     + 
Sbjct: 3   RWIIIALLFAVGLWLVPYSVPLLFALATALLLEPSIRRLQENYKLKRAHAVTVIFSLFII 62

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  + L FL    + ++  L  K+         V   L        +S       S  + 
Sbjct: 63  ILGLSLYFLVVIFVQQVMALSQKLPYVLNEATKVLDRLIQTWQSYSSSIPQEIIDSLERG 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +  + +  L  +    + +    +      + +  +  +IALF    D   + Q +    
Sbjct: 123 VNTVEQMLL--SFATNLTQSLVHYIAAIPAFLIHFLVYLIALFLICLDLPQLKQGMRRYL 180

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   + K          ++++    +  +  ++ GV     + ++  ++ 
Sbjct: 181 SERTEQRLGMVVAQLSKAGIGFLKAQFLLSLITFFLALAGLFVLGVDYAALMALVIVVVD 240

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P     S       + +           +   + + +V + + P +    + +  L  
Sbjct: 241 ILPILGTGSVLVPWGLISMANGNNTLGIGLIVLFVVITVVRRIIEPKVFSTNLGISPLAA 300

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              +  G + +G +GLF+GPV++ L+  + K  ++  
Sbjct: 301 LVSVYLGFQLLGFIGLFVGPVVVILVEALAKAGVIKW 337


>gi|146277003|ref|YP_001167162.1| hypothetical protein Rsph17025_0956 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555244|gb|ABP69857.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 349

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 80/294 (27%), Gaps = 20/294 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + + ++ G                       +  + V    I   L      + +  EL 
Sbjct: 29  IFAGILFGVFLSAGAGLVSRVTGVGRGGAIALFILLVTAGLIGSFLAFAPAMLEQADELA 88

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            ++  A +         S  P                     L      +  +     FA
Sbjct: 89  RQLPPALESLRDRISSFSWGP--------------------SLLGRLAPSRLMSGEGGFA 128

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S           + + ++    +   D     + L +L         +++  +    +R+
Sbjct: 129 STAVSATFGAIGNFVIILFVGLYAAIDPGLYRRGLRALLSPELRPRGEEVMDVAGHTLRN 188

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  I     GL      WL G+P    LG+I AI+  IP   P+     ++ L +  
Sbjct: 189 WLGGQLISMSFVGLFTWLGLWLIGIPLAFILGLIAAILTFIPNIGPVLSAVPALLLAMPE 248

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                  +         +    + P +    + LP        +      GL+G
Sbjct: 249 GWSQVGLVLAVFLTVQAVESYVVTPIIQKERVSLPPALIISAQLLMGVLFGLMG 302


>gi|289573754|ref|ZP_06453981.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
           tuberculosis K85]
 gi|289538185|gb|EFD42763.1| LOW QUALITY PROTEIN: conserved membrane protein [Mycobacterium
           tuberculosis K85]
          Length = 355

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/311 (17%), Positives = 108/311 (34%), Gaps = 5/311 (1%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
               P++  F  +   ++   A    +S +   +VP+  L    ++++  +V  V    +
Sbjct: 13  LLFTPLFKWFTKRF--NTGLSAACTLLSALAAVVVPVGALVGLAIVQIARMVDSVADWVR 70

Query: 102 HG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
              +                 +   H++        +   +  N  +++  F        
Sbjct: 71  TTDLSTLGDKILQFVNGLFDRVPFLHITVTADALRKAMISVAQNVGEWLLHFLRDAAGSL 130

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
                S I  +        +   +   +  L   L         + +  ++R T  G  +
Sbjct: 131 AGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-LGEDVTDLYLQKMGSMVRGTVNGQFV 189

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVIT-AIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           IA  +G+   ++ ++AG      +  I    +++IP G  I      I ++  GNI    
Sbjct: 190 IAACQGVAGAASIYIAGFHHGFFIFAIVLTALSIIPLGGGIVTIPFGIGMIFYGNIAWGI 249

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + LW  + +  +D  LRP LV    +L        +  G+   G  G+ IGPVLM LI 
Sbjct: 250 FVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLLSVFAGITMFGPWGIIIGPVLMILIV 309

Query: 340 VIWKESIMAIK 350
                 +   K
Sbjct: 310 TTIDVYLAVYK 320


>gi|325927304|ref|ZP_08188558.1| putative permease [Xanthomonas perforans 91-118]
 gi|325542305|gb|EGD13793.1| putative permease [Xanthomonas perforans 91-118]
          Length = 389

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 105/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    P++ A        PI      K        A++     +
Sbjct: 52  LVVLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGL-RKLYIPRFLGALLILCLGL 110

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     L       +++   ++    +    + + +                     
Sbjct: 111 AGTVTLATQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGGEGQRG 170

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 171 VQIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 219

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV      +  +P    +  G + 
Sbjct: 220 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILSVLQIPLPEAILWGTVV 279

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 280 ALLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 339

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 340 ISPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 375


>gi|17230655|ref|NP_487203.1| hypothetical protein all3163 [Nostoc sp. PCC 7120]
 gi|17132258|dbj|BAB74862.1| all3163 [Nostoc sp. PCC 7120]
          Length = 347

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/309 (10%), Positives = 96/309 (31%), Gaps = 11/309 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + I L  L+ ++     + +++++      +             +  +++   V+
Sbjct: 7   LGLLALVISLYILWEIRQLVLLLFTSVVLAVAINQLVLRLQ-LAGIKRIWAVLLSVAIVV 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +   L +    + E ++L+  +            WL +     +  E+         
Sbjct: 66  TFLVSAFLLILPPFIEEFRQLLVLLPTGINQIQQGINWLEERLVDSYLPEIPD------- 118

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I          +  + + A       +   L  + +I+       +     +     
Sbjct: 119 ---IDRLLEQLQPWVTSLTQQAIALFSTSVTALLETLLVIVLTLMLLANPQPYRRVFIRF 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             + +     +I       + +  +G  +  +  G++ G   W+  VP  +A  V+  ++
Sbjct: 176 FPNFYRHRVDEILTRCATGLGNWTVGALMEMLFIGILSGLGLWILQVPLALAHAVLAGLL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P     + + +      + A  + +   +   +    L P ++   + L    
Sbjct: 236 NFIPNIGPTLSVFLPMAIAFLDAPWKALAVLILYLVIQNVESYWLTPTIMAKQVALLPAV 295

Query: 312 TFFGLVGGV 320
           T    +  V
Sbjct: 296 TLTAQIVFV 304


>gi|313206604|ref|YP_004045781.1| hypothetical protein Riean_1114 [Riemerella anatipestifer DSM
           15868]
 gi|312445920|gb|ADQ82275.1| protein of unknown function UPF0118 [Riemerella anatipestifer DSM
           15868]
 gi|315022099|gb|EFT35128.1| hypothetical protein RAYM_06367 [Riemerella anatipestifer RA-YM]
 gi|325335954|gb|ADZ12228.1| protein of unknown function UPF0118 [Riemerella anatipestifer
           RA-GD]
          Length = 373

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/344 (18%), Positives = 137/344 (39%), Gaps = 20/344 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + + L+  Y L  F   +L A+ +   S       I KK       A++  ++ + + I+
Sbjct: 26  VTLFLLMAYQLAMFLPSLLGAITLYVISRKYNLYLIEKKNWKPWVSALVIMLATVVILIL 85

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           PL FL          L+ K+  A  +      +L  I   + +                 
Sbjct: 86  PLYFLI-------DTLIEKLGNAQAYMGRFNDFLDKIHSYILSEIQIDILSKENLDKVKE 138

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +   L T  +       +     +               +F      I +++ +    L 
Sbjct: 139 TAGQLSTTILSSTLNTVTIIVSTYFLL------------YFMLVKPRIFERILTNAAPLK 186

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 IS  + K+I +  +G+ ++A G+GL     Y + G PS + L  +T I +MIP 
Sbjct: 187 RTNINLISEKIRKMIIANAIGIPVVAFGQGLAALVGYLIFGAPSVILLFALTTIASMIPI 246

Query: 257 -GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            G  + +  V+++++ +G+  +   L ++  + + ++D  LR  L+     +  L T FG
Sbjct: 247 VGGALIYVPVALFMIAEGDTVSGVGLAIYCLVVVGLIDNVLRFTLLKKLEDIHPLNTVFG 306

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           ++ G+   G +GL  GP+L+++  ++ +       +    + ++
Sbjct: 307 IILGMNLFGFMGLVFGPILVSVTLLLIQIYRDEFSDEDNVVIAS 350


>gi|312130455|ref|YP_003997795.1| hypothetical protein Lbys_1735 [Leadbetterella byssophila DSM
           17132]
 gi|311907001|gb|ADQ17442.1| protein of unknown function UPF0118 [Leadbetterella byssophila DSM
           17132]
          Length = 373

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 115/334 (34%), Gaps = 17/334 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             + + II+   Y L+    P L A ++ F   PI     + +        VIA +  + 
Sbjct: 16  TLLSIVIIVFIAYILEDVVVPFLFAALLSFLLVPITQYLENHRIPR-----VIAILISIV 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L I  +  + Y    ++ +L        +        L+ +       +           
Sbjct: 71  LIIAIIGGVMYAAYTQVIKLQDLFPQIEKRFNEWISALASLLSNFDIDKQ---------- 120

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I       ++ +    +F         ++ +SI  + + +F        +   +    
Sbjct: 121 QLIAEGQKHISDAVKSGSQFLGATIGGTSNFLMSIALLPLYIFLMLMYRDFLKTFVFKWL 180

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +             V  V+R    G+ ++ +  G +  +A +  G+   +  G   A +A
Sbjct: 181 KDTSKHKIVTTINKVKSVVRGYITGLVLVILIIGTLNSTALYFIGIDHALFFGFFAAFLA 240

Query: 253 MIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +IP           + + L+ + +   A  +    A+  F+    + P++VG  + +  L
Sbjct: 241 IIPYIGVALGSALPILVALITQDSYLAAVMVAASFAVIQFLEGNFITPYVVGNQVSINAL 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                L+   +  G+ G+ +   + A++ VI+  
Sbjct: 301 IAITALLLFGKLWGIGGMILALPMTAILKVIFDA 334


>gi|302060722|ref|ZP_07252263.1| membrane protein, PerM family [Pseudomonas syringae pv. tomato K40]
          Length = 334

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 103/335 (30%), Gaps = 12/335 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++F+    +  L G  APVL+ L++ F    +      +          +     +   
Sbjct: 1   VLLFVAFTLVLTLGGMLAPVLAGLVLAFLMHGLVGLLE-RLRMPEVAAVGVVFTLFIGAL 59

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +V LL L      ++  L ++          V   L +    + + E     +   +   
Sbjct: 60  LVFLLVLVPLLWHQLITLFNEAPGMLAKWQSVLLLLPERYPHLVSDEQVLLAIEVARGE- 118

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                            F+     + ++  + ++ + I +FFF +D   I +        
Sbjct: 119 -------VGKIGQLALTFSISSLPLLVNLMIYLVLVPILVFFFLKDRHVIGRWARGYLPR 171

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              A   +++  + + I +   G  I     G V   A+   G+     L ++  I  ++
Sbjct: 172 E-RALLNRVADEMKRQIANYIRGKVIEIFICGGVTYIAFVALGLNYAALLAMLVGISVVV 230

Query: 255 PGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P    +  T       L   G       L +   +   +    L P L    + L  +  
Sbjct: 231 PYVGAVVVTVPVALIGLFQWGWSDQFIYLMIAHGVIQALDGNVLVPLLFSEAVNLHPVAI 290

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              ++      G  G+F    L  L   +      
Sbjct: 291 ICAVLLFGGLWGFWGIFFAIPLATLFKAVLDAWPR 325


>gi|154149249|ref|YP_001406317.1| acid membrane antigen A [Campylobacter hominis ATCC BAA-381]
 gi|153805258|gb|ABS52265.1| acid membrane antigen A [Campylobacter hominis ATCC BAA-381]
          Length = 352

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 117/351 (33%), Gaps = 21/351 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +  +I+ ++   +Y  + F   +   ++I  ++  +    +   +      AV
Sbjct: 1   MKTSKIFLSGVILIMLGWVIYLFQSFLLAISIGVLIAVSTAGLNEKILKFTKNRQIVSAV 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + TV +  LF VP ++        +  +   ++      I    +            L  
Sbjct: 61  LTTVILCVLFFVPFIYAIAEIAKSLANIDVALLDKTLSYIKNYEF-----------SLPN 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +    +K           I  I  +AS       ++ L +  +II  FF    G  I
Sbjct: 110 FAKNFEPDIKSFIANLNFEGIIKQILSYASGIAKSSANFALQMFLIIIFYFFTNLYGRDI 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                     +       + +     +   F    + A+ +G +      + G       
Sbjct: 170 LNFFKKSIP-IAENELDYMFKQTSNTMSVVFYSTILNAVLQGFLFSIIAAIYGFDMIFFA 228

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP----- 298
            +      +   G  + +  + +Y L  GN   A  + L+  I +  I D  ++P     
Sbjct: 229 ILYAFCSLIPIIGGALCWAPLGLYELANGNFSAAVIISLYSIIVISTIADNFIKPVIIRF 288

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               LV  P  +  +  FF ++ G+ T G  G+ +GP ++ L   +    +
Sbjct: 289 INSKLVDNPANINEILIFFAMLAGIGTFGFWGMILGPAILTLFVSVLNLYV 339


>gi|218247316|ref|YP_002372687.1| hypothetical protein PCC8801_2523 [Cyanothece sp. PCC 8801]
 gi|257061349|ref|YP_003139237.1| hypothetical protein Cyan8802_3583 [Cyanothece sp. PCC 8802]
 gi|218167794|gb|ACK66531.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
 gi|256591515|gb|ACV02402.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 360

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 116/329 (35%), Gaps = 13/329 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  +++ V + +L+     + +A ++ F      ++          +   +  +  +
Sbjct: 19  LVFLNTWLLFVLIDYLEPLGTILTTASLLAFLLDLPIAALEKW-GIKRGWAITLVLLLAL 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +  LFL    + +++EL+S +    + G      L +           T++     
Sbjct: 78  IILSLIALFLIPLIVEQLRELLSTLPQWIESGNQQINALKEW--------AITENYPFDL 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  I       +  +  +           L    + + +++   F    G SI+Q + S 
Sbjct: 130 ASIITQFAEKLSLILKSLGNQFLSLIGGTLGTIFNSLLVLVLTVFLVLTGNSITQGIFSW 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +  +I   + K   S F    I+A    +     +    VP  V  GV   + 
Sbjct: 190 IP---RPWNTRIQESLRKTFESYFATQAILAGILSIAQTIVFLFLQVPYAVLFGVTIGVT 246

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP  + I+   VS  LLI  N            I   I D  + P L+G    L  + 
Sbjct: 247 TLIPYASAITIIIVS-VLLIFQNFQLGITALFLTIIVGQINDNVISPRLMGDMTGLNPVW 305

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
               L  G +  G+LGL I   L ++I  
Sbjct: 306 IVVALFIGGKFAGVLGLIIAVPLASVIKT 334


>gi|320160814|ref|YP_004174038.1| hypothetical protein ANT_14100 [Anaerolinea thermophila UNI-1]
 gi|319994667|dbj|BAJ63438.1| hypothetical membrane protein [Anaerolinea thermophila UNI-1]
          Length = 432

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/357 (10%), Positives = 115/357 (32%), Gaps = 9/357 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + ++   +  I+   L   +    P+L A+++ +  +P+ SS       S      I
Sbjct: 32  STTKLVVSLALFTILAWLLVRFRNIVGPLLLAVLLAYLLYPMVSSIQRATRISWRLAVGI 91

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++ L +          + + + L+  +    +    +    S++P  +   +    
Sbjct: 92  VYFLLLLLVLGGTTLSGLAVVEQSQSLIRFLQQTLKDLPSLLTQWSEMPVQVGPFQFVLP 151

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +     +L       +    +               ++   + F+++  +F   +    S
Sbjct: 152 NFMDVNTLTQSLLG-IVQPLLSRAGLLVGSIASGAFNFLGWVFFILLISYFILAESGGTS 210

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +    +    +K    +  +  +   G  II +   LV  +   + G+   + L 
Sbjct: 211 PEIIRINLPGYNEDLRKFGVYLSGIWNAFLRGQIIIILITILVYTALLGILGLRFFIGLA 270

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLR 297
           ++  +   IP   P         + +                 +         I+D  + 
Sbjct: 271 LLAGLARFIPYVGPAVAWTSYGLVALFQGSNYFGLPPWGYVILVVGLAWFTDVILDNLVA 330

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             L+G  +K+         + G    G++G+ +   ++A + ++    +  + + + 
Sbjct: 331 TRLMGTALKIHPAAVMVSALIGANLFGIIGVVLAAPVVATLKLLTSYVVYRLSDQEP 387


>gi|299132268|ref|ZP_07025463.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
 gi|298592405|gb|EFI52605.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
          Length = 365

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 115/345 (33%), Gaps = 17/345 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++  I+  LY  + FF PV++A+I+G    P      + +       A+I  ++  
Sbjct: 34  LVALLILAIVAVLYVGRAFFLPVVTAVILGTMLSPAAKRLEAFRVPRPVSAALIVVLTWA 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++  L                          +P     +   +   +         Q
Sbjct: 94  AFVLMIGLISVPVM---------------DWFGKLPELGPILKDKLHVFDRPLAIWHQLQ 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           ++     T   +  +  +         +   +   ++F  + + F           + + 
Sbjct: 139 AMLGAPATAEPSLQLPKVAWVQPTIEFLSPTFTEILLFFAVLVLFIASWPDLRRALVMNF 198

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             H       +I   +   + S  L ++ I  G G+  G A  LA +P+   LG + A +
Sbjct: 199 PNHDSRLRMLRILNAIETNLGSYLLTVSFINAGVGVATGIACALAQMPNPAGLGGLAATL 258

Query: 252 AMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP   PI      + + ++    +  A    L  A   F+    + P ++G  + L  
Sbjct: 259 NFIPIIGPILMFAILLCVGIVAMPTLGGALIAPLAFAGIAFVEGHFVTPTIIGRRLSLNA 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L  F  L       G +G F+   L+ +  ++ +  I    +   
Sbjct: 319 LAVFLALAFWTWLWGPMGAFLSSPLLIVGLIVKEHMIPERDQPLP 363


>gi|172036286|ref|YP_001802787.1| hypothetical protein cce_1371 [Cyanothece sp. ATCC 51142]
 gi|171697740|gb|ACB50721.1| hypothetical protein cce_1371 [Cyanothece sp. ATCC 51142]
          Length = 348

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/324 (12%), Positives = 99/324 (30%), Gaps = 11/324 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R +M   Q +     + I    L+ ++     V +A++       +              
Sbjct: 3   RISMNLGQWL-GLSSLIISGYILWEIRQVLLLVFTAVVFATALNRLVKWLEQ-FNIRRNL 60

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  ++++ L  +    +    + + ++L++ +    +        LS+         
Sbjct: 61  GIIIVVIAIIILSSLFAGLVVPSFVDQFQKLLALLPTVWERLRSNLILLSETQSRFDWLP 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    L            +  I           L   L  IF++        D 
Sbjct: 121 QPPSLSNLLTRL---------QPLLTDIFTNFFTVFSNSLAVILQGIFVLFLTVTMIIDP 171

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +    L    +     +I  +    + +   G+TI  +  G + G   WL  V   
Sbjct: 172 KKYRRLFLKLFPSFYRKRGDEILTLSEVALGNWLTGVTINCLFIGALSGVGLWLLQVKLV 231

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   ++  ++  IP   P +     + + +  N +    + +W  I   I    L P ++
Sbjct: 232 LVHALLAGLLNFIPNVGPATSVIFPLMVALLDNPWKIWAILIWYFIIQNIESYWLTPTVM 291

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGL 325
              + L    T    +   +T G+
Sbjct: 292 AKQVSLLPAVTLMAQIFFAQTFGI 315


>gi|156743476|ref|YP_001433605.1| hypothetical protein Rcas_3538 [Roseiflexus castenholzii DSM 13941]
 gi|156234804|gb|ABU59587.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 406

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 99/349 (28%), Gaps = 22/349 (6%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----------------KEESSTFLA 63
            +V + F          A +I     P+ S   +                 +  S     
Sbjct: 26  AVVVVSFFATPLLLFALAWLIAVVLQPLVSHLTALDLPTITIRAHSVPVPPRHLSRVLSV 85

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +  +++  + +V +L        ++  L        +  +     L +        + +
Sbjct: 86  ALIYLALFAILLVVILSFVPTITQQLTTLTGSAPTTVESVVRWIGRLEE------GLQRF 139

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    ++  + T   T     + + +            +I  ++I  F+   DG  
Sbjct: 140 GFRGDLTAIVQPEAITRQLTGIGSAMLQQSLGIAGSIATVLFNIFLVLILSFYITLDGPR 199

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           I +    L    +      +  +V +V         + ++  G+       L G+     
Sbjct: 200 IGKSFIMLLPRSWHDEMDGLFAVVDRVFGGFMRAQFVNSLLYGIANAIVMALFGLSDIAL 259

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             VI AI+  IP               I         L L       +    + P LVG 
Sbjct: 260 ASVIAAILVFIPLVGGFFALIPPALFAILFVPDRVGWLVLVLLAVQQVQFNVIMPRLVGQ 319

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            I L  L  F  L+ G    G  G+  G  +  +IA I +      +  
Sbjct: 320 AIGLHPLLVFAALLLGGTVAGGWGVLFGIPVAGVIASIAQFFYERARRT 368


>gi|315224179|ref|ZP_07866019.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           ochracea F0287]
 gi|314945912|gb|EFS97921.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           ochracea F0287]
          Length = 358

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 119/352 (33%), Gaps = 24/352 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           + +   +++ + L +LY L+     ++ +L++     P+   F  K +    T   V+  
Sbjct: 12  RAVGIIVLVALGLYTLYLLQSIIIYLIVSLVLTLMGKPLIQFFYKKLKIKNRTLCVVLTM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L +          + + K L S  +   +  +      +    G+   +      
Sbjct: 72  LLFVILSLGVFSLFIPLLISQGKNLSSLNIELLKDNLDALLHQTLSKVGLQREDYSFGVQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +               IP F + F      + +    ++   FFF +DG  I   
Sbjct: 132 EMLNFID--------------IPNFLNSFISFISSFGVGFFSVLFITFFFMKDGDRILIA 177

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S+         K     +  ++   F+G+ +      ++      + GV +   + ++
Sbjct: 178 LLSIFSPKRKRKLKTSIFKINNLLSRYFVGLMLQLTILFIIYTIVLLIFGVENAFIIALL 237

Query: 248 TAIMAMIPGGAPISFTAVSIYL---------LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            A++ +IP   P+    +   L          +  ++     + +   I  FI +   +P
Sbjct: 238 CALLNLIPYIGPMIGFILMALLTMSSNLQNDFMTVSLPTTIYVLIGFIIGQFIDNFFSQP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +    +K   L  F   +      G+ G+ +      ++ V+ KE     K
Sbjct: 298 LIFSNSVKSTALEIFLITLISGTLFGITGMVLAIPAYTVLKVVLKEFFPNNK 349


>gi|153808104|ref|ZP_01960772.1| hypothetical protein BACCAC_02390 [Bacteroides caccae ATCC 43185]
 gi|149129007|gb|EDM20223.1| hypothetical protein BACCAC_02390 [Bacteroides caccae ATCC 43185]
          Length = 341

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 143/351 (40%), Gaps = 20/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL +        +    K++   +  A++ T 
Sbjct: 9   KYSLIVIILFMGVIIFRQITPFLGGLLGALTMYILVRTHMNYLTEKRKMKRSISALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F+VPL  + +  + +++++        +    V  ++ +  G             
Sbjct: 69  ETIMVFLVPLGLIIWLVVNKLQDINLAPQTFIEPIQQVAEFIKEKTGYDVL--------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +  +  +PR             +++  MI  L+F    G  +   +
Sbjct: 120 ---------GKDTLSFIVSILPRIGQIIMEGASSLAVNLFVMIFVLYFMLIGGKKMEAYV 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +      A  +++ R +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +T
Sbjct: 171 NDILP-FNEANTQEVIREINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNILLLGFLT 229

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  V+ YL I G+ F+A  L  +GAI +   D  +R  L       
Sbjct: 230 CFATIIPMVGTALVWFPVAAYLAISGDWFHAIGLAAYGAIVVSQSDNLIRFILQKKMADT 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L T FG+V G+   G +G+  GP+L++L  +          + +  + S
Sbjct: 290 HPLITIFGVVIGLPLFGFMGVIFGPLLLSLFFLFVNMFKKEYLDLRNNLPS 340


>gi|313123584|ref|YP_004033843.1| hypothetical protein LDBND_0821 [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312280147|gb|ADQ60866.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 357

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 108/341 (31%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
              N   + R  ++ +I+++LY+++     +L   I  +    +      K +  S   +
Sbjct: 8   RFKNNIHLRRATVLVMIILALYYVRTMMNTILLTFIFTYLIVHLVRFVQGKFKHVSDKLI 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  + ++ L    L +     + ++ ++   V+   Q                  +++
Sbjct: 68  VALTYLLIVVLLYFALRYYVPVLVKQVTKMTKSVINYYQT-----------------NDV 110

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   + +   + +    + +  +      FG + + + ++++              
Sbjct: 111 GWLMTQLHKYVSEKTISSQVKSSLTALTAALKGFGSVTMSFVMALVLSFFYTIELKEMQT 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S              R              +IAI    +      +  +P   
Sbjct: 171 FSQSFLKSDLFGWLFEDIAYFGRKFTNTFGVVLEAQFLIAICNTALTIVCLAIMKMPQIF 230

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I +++P    I     +S+     G I +   + +  A+   +    L P  +
Sbjct: 231 ALGLMVFICSLVPVAGVIISLIPLSLVAYTVGGIQDVIYILIMIAVLHTLETYILNPKFM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G    G  GL +   +      I 
Sbjct: 291 SSKTELPIFYTFVVLLFGEHFFGTWGLIVSVPIFTFFLDIL 331


>gi|254294786|ref|YP_003060809.1| hypothetical protein Hbal_2432 [Hirschia baltica ATCC 49814]
 gi|254043317|gb|ACT60112.1| protein of unknown function UPF0118 [Hirschia baltica ATCC 49814]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 102/341 (29%), Gaps = 28/341 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +   +I   LY     FAP   A+ +             +  +   +LA  + V ++
Sbjct: 8   IWVIASGVITYGLYVGADIFAPFALAVFLWLVIEGFARLMQERIPKLPRWLAQTSAVLIV 67

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               + +  +F   +  + +              +   +         +         P 
Sbjct: 68  LGIALTVTLIF---IDGLNDFAKNAGAYEARINEILTEIYARFNIFTVA---------PP 115

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L  +      T  +  I          F+   + I F+ +A   +     +I       
Sbjct: 116 DLSRMLFNEENTKFVQPILDSVQGLASSFVLIMIYIAFLFLAEKNWPTKLDNI------F 169

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +    +  +++   V K +       T+I+    ++      + G+ + +    I   +
Sbjct: 170 PDTKTRSQAREVGHQVRKSMEEYLWVQTVISGIITVITYITLLILGLDNALFWAFIVFFL 229

Query: 252 AMIPGGAPISFTAVSIYLL----------IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             IP    I    +                     NA  +    +I  F +   ++P ++
Sbjct: 230 NYIPTIGSIVAAFLPGLFALAQPEWPAYMPTDATLNALIVLASVSIWQFAIGNFVQPRMM 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G  + L  L     L       G+ G+F+   L  L+ +++
Sbjct: 290 GESLNLSALVVLVSLAIWGALWGIPGMFLSAPLTVLMMILF 330


>gi|330889390|gb|EGH22051.1| permease [Pseudomonas syringae pv. mori str. 301020]
          Length = 289

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 99/283 (34%), Gaps = 7/283 (2%)

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  LL L      ++  L                       G+         +    S 
Sbjct: 1   MMALLLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKAAISE 60

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                     + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L  
Sbjct: 61  ----HMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLP 116

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A+
Sbjct: 117 RQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAI 176

Query: 254 IPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +P    +       V+      G+++    +     I   +    L P LVG  I L  +
Sbjct: 177 VPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPV 236

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 237 AVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 279


>gi|160941557|ref|ZP_02088889.1| hypothetical protein CLOBOL_06455 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435522|gb|EDP13289.1| hypothetical protein CLOBOL_06455 [Clostridium bolteae ATCC
           BAA-613]
          Length = 373

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 35/319 (10%), Positives = 86/319 (26%), Gaps = 13/319 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI---------SKKEESSTFLAVIATVS 69
            +     +L    AP     I+     P                +       +  +  ++
Sbjct: 34  AVYAGFKYLLPLVAPFFVGYILALLLRPSARFLSYRMRVTVKGKRYHMPIGVIGGVEFLA 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +    L         E K L+ ++ +  +                            
Sbjct: 94  VLSVLGTVLYRGALKLCAEGKLLMVQLPVWLEQFDLWLTGNCHRVEHAMGLRPGC-VADM 152

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +        KT  + F+   +           +  + + +A     ++   +  + D
Sbjct: 153 AGDMLYHMVDTCKTAAMPFLMANSMSVISCLAKAAIVSLVVFLAAILSLQEMEDLRDRRD 212

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 F   +  I   + +  ++ F    II      +     +L   P ++  G+   
Sbjct: 213 Q---SAFRKEFNMIGSRLVQTGKAWFRSQGIILFITTGLCIGGMFLIRNPYYIMAGIGIG 269

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+  +P     +         +    +    +     +  + V + L   ++GG + L  
Sbjct: 270 ILDALPIFGTGTVLIPWAVFRLAVGDWKQALVLTAIYLVCYFVRQILEVRMMGGQVGLSP 329

Query: 310 LPTFFGLVGGVRTMGLLGL 328
           L T   +  G+   G  G 
Sbjct: 330 LETLASVYVGLELFGFFGF 348


>gi|325002986|ref|ZP_08124098.1| hypothetical protein PseP1_29665 [Pseudonocardia sp. P1]
          Length = 426

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 92/334 (27%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++      I    +  +     P   ALII     P+      +         ++  + 
Sbjct: 40  ILLGLAAATIAAAGMQAVAWLIGPAFMALIIVIAVAPVQGFL-RRHNWPGWATTLVVVLL 98

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  + +   L + Y       EL      A          L+ +  G             
Sbjct: 99  VYAILLGLALGIVYSVARLATELPQYAGSATALVNRATAGLATMGIG------------- 145

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           P+ L+  + +         +    S    +  ++   +  ++         G  ++    
Sbjct: 146 PEQLQQAAGSLDLGKLAGLLGALLSSVAGLATNFVFLLALLLFLGVESSGAGDRLAAIA- 204

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                 R   +  T+  +   ++   A  + G+P     G++  
Sbjct: 205 -----ADRPATSAALARFAWGTRQYLIVTTVFGLIVAVLDWVALLMLGIPLAATWGLLAF 259

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP    +        L L+         + +      F+V   ++P  +G  + L 
Sbjct: 260 VTNYIPNVGFVIGVIPPALLGLLTSGPELMIIVIVVFCAINFVVQSIIQPRFIGDAVGLS 319

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   L  L   + 
Sbjct: 320 VTVTFVALVFWAWLLGPLGAILAVPLTLLAKAML 353


>gi|302877160|ref|YP_003845793.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|307687859|ref|ZP_07630305.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
 gi|302580017|gb|ADL54029.1| sporulation integral membrane protein YtvI [Clostridium
           cellulovorans 743B]
          Length = 349

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 114/339 (33%), Gaps = 4/339 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++ +++  I+ ++++    +  P + A +            I K +  ++  A I T
Sbjct: 9   EKSLIFFILFTIVFITIFGTIQYTLPFVLAFLFSLLLKRPTKYLIEKGKLKTSLAAFITT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                + I  +L    Y + E+K L   V           R   +     + +   T   
Sbjct: 69  TIFCIVVIGLILLSINYLISELKSLTYNVTDIVTVNFDYIRKWFNDLVDSYNNLDPTLLD 128

Query: 128 SHPQSLKILSE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +  ++L   S   +    +    +  +              I+F I + +F  +D  S  
Sbjct: 129 AINKNLASQSSKLSNYAVSLSSSVVSYLFGIISSLPTLLTLILFTIFSTYFITKDIVS-K 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                           K+      ++    L    +           + L GV     L 
Sbjct: 188 DLTSKYKNMPNRNLITKLLENSKNMLGKYLLAYIFLLFMTFCENLIGFSLLGVDYAFLLS 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++ ++P    I      I   +    +      L+    + ++ + L P L+   +
Sbjct: 248 LLCGVLDLLPIVGMIIVYIPLILTYLLQGNWIMVIALLFLYTFVMLIRQVLEPKLLSSTL 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+  + +   +  G++  G LG+F   +L+ +   I++E
Sbjct: 308 KIHPVASLAAIFIGLKAYGFLGMFYCIMLL-VFYNIFRE 345


>gi|256422377|ref|YP_003123030.1| hypothetical protein Cpin_3362 [Chitinophaga pinensis DSM 2588]
 gi|256037285|gb|ACU60829.1| protein of unknown function UPF0118 [Chitinophaga pinensis DSM
           2588]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/339 (15%), Positives = 115/339 (33%), Gaps = 15/339 (4%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           N +     + + +I+           P+  A+++     P+ +     +  S    A   
Sbjct: 9   NARLAYTLLCIILIIYVARLGHELIIPLAFAMLVSIMLLPMANQLEKWR-FSRGLAAFTV 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
               + + +  LL L       + +              + +W++       A ++    
Sbjct: 68  IFLFVIMLLGILLLLAAQMGSFVADFPQLQQQLLTSLNSLQQWINVKFHIDTARQMDYLE 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +L                  F S   +      + +IF+++  FF       I  
Sbjct: 128 QMAMGTL-------------GSATGFISSTLLSLSSLLIFVIFVLLYSFFLLLYRSLIFT 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  L           +      +I+    G+ I  +   +V  +  W+ GV     LG+
Sbjct: 175 FLIRLFREKHRDKLLDVVMQTRYIIKGYVSGLMIEMLVVAVVNCAMLWIFGVKYATLLGI 234

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA-TCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A+  +IP       T + + L +  +   A   +     +  F+    L P ++G  +
Sbjct: 235 MAALFNLIPYLGIYVATIICMLLTLTNSSLAASIQVGAGLLLVHFLDSNILLPRIMGSKV 294

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           K+  L T  G+V G    G+ G+F+    +A++ ++++ 
Sbjct: 295 KINALVTILGVVSGNLIWGVPGMFLAIPFIAILKIVFEH 333


>gi|149372808|ref|ZP_01891829.1| hypothetical protein SCB49_12634 [unidentified eubacterium SCB49]
 gi|149354505|gb|EDM43070.1| hypothetical protein SCB49_12634 [unidentified eubacterium SCB49]
          Length = 364

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 120/351 (34%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I     + I+   LY +K  F     A +I   + PI   F ++ + S+T        
Sbjct: 14  RSITIIAAVLILGWFLYSIKALFLFFGIAAVISLIARPIMFFFKTRLKFSNTLATFTTLF 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+    + +       + + + +           I       D+      +  +     
Sbjct: 74  LVILAVSLLIRIFVPIVIEQGQNIAE---------IDFDMVKRDLNELSIQASDFLGVEQ 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I     +K+  +  +P F   F     D  + +  ++   FF  ++   I   +
Sbjct: 125 IDIIESIKKSEQIKSFDLGLVPSFFDVFISNLGDGLVGLFAVLFISFFLIKEENFIPSAV 184

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S  +      +  +   +  ++   F+G+ +      +       +  + + +A+ +I 
Sbjct: 185 TSFAKEGNEKRFLLVFTKIKNLLSRYFIGLMVQIFILSVFYSILLLVFDIDNAIAIAIIC 244

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNAT---------CLFLWGAIELFIVDKTLRPF 299
           A + ++P   P+    + + +++  N+              +F+   +     +   +P 
Sbjct: 245 AFLNIVPYLGPLIAGGLMMLIVLSNNLAADFSTELFPVLCYVFIGYCLAQLFDNLITQPV 304

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  ++ G    G+ G+ +   +   + V+ KE +   K
Sbjct: 305 IFGKSVKSHPLEIFVVILIGGFLFGIAGMILAVPVYTALKVMSKEFLSEYK 355


>gi|148261662|ref|YP_001235789.1| hypothetical protein Acry_2679 [Acidiphilium cryptum JF-5]
 gi|326405154|ref|YP_004285236.1| hypothetical protein ACMV_30070 [Acidiphilium multivorum AIU301]
 gi|146403343|gb|ABQ31870.1| protein of unknown function UPF0118 [Acidiphilium cryptum JF-5]
 gi|325052016|dbj|BAJ82354.1| hypothetical protein ACMV_30070 [Acidiphilium multivorum AIU301]
          Length = 352

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/335 (16%), Positives = 117/335 (34%), Gaps = 21/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +  +++       F   +  AL +     P+      +        A+I       +   
Sbjct: 32  IGGLVLCALLAAPFAGALTWALTLAILFTPLQRRLE-RLVRHPGAAAIITVGIAAIVVAA 90

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           P + +    + E     + V      G        D        +               
Sbjct: 91  PAVLVIERLVREAAASAAYVQQHLAAGTLAVPPQVDWLARQIDLQ--------------- 135

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
               + T     +    + F    L   + I+     LFFF RD       L ++   L 
Sbjct: 136 ---AMITRASGLLSTVGASFLRGSLAQAVEIVLTFYILFFFLRDRARADAALRAVLP-LT 191

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++       + +   G  +++  +GL+ G  +W  G+ + +  GV+  +++++P 
Sbjct: 192 GPETDRLFSRTADTVYAVIYGTVMVSTLQGLLGGLMFWGLGLAAPLLWGVVMGMLSLVPV 251

Query: 257 GAPISFTAVSIYLLIKGNIF-NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                       LL        A  L LWGA+ +  +D  +RP LVG  ++L  +P+F  
Sbjct: 252 LGAFIVWIPEAVLLALNGHEEKAIILSLWGALVVGTIDNVVRPVLVGNRLQLHTVPSFIA 311

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++GG+   G  G  +GP++++   V+++      +
Sbjct: 312 IIGGLILFGPPGFVLGPLIVSATLVLFEALRARAE 346


>gi|226310975|ref|YP_002770869.1| hypothetical protein BBR47_13880 [Brevibacillus brevis NBRC 100599]
 gi|226093923|dbj|BAH42365.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 376

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 111/342 (32%), Gaps = 11/342 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++++ +           P + AL+I        +   SK         +IA + ++ L  
Sbjct: 22  LVYVGIWVFQHATPLLYPFIIALLIALIINKPVTFMTSKFRIPRWLSVIIALLVLILLAG 81

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-----------WLSDIPGGMWASELWT 124
                +    ++E+ EL  ++ +  Q      +           +           + + 
Sbjct: 82  GVATLIITETVVEIGELAKRLPVVAQELAHYLQTTISQDFLMGLYNQIQWFYAQLDQGYQ 141

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+      I + T +  N I           +   +     +  I+  FF  +D    
Sbjct: 142 EKLASTVGSAISTITNVGQNLIVKFLDGLKNLLLSLPNMATVSVISIMGAFFISKDFSLW 201

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +   L      +   +I   +   +         +      ++     +  V   + +
Sbjct: 202 EARARRLLPTGVNSRLDQIFIDLRNALFGFVKAQLTLISLTAAIVIIGLLVMRVEYAITI 261

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+IT ++ ++P     +     I  +     +            + I  + + P +V   
Sbjct: 262 GLITGLVDLLPYLGTGTVFVPWIIYMFFKGNYTMVIGLSILYGVVLIFRQIIEPKVVAEN 321

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + L  L T   L  G++  G LGL IGPV + +I  + K ++
Sbjct: 322 VGLDPLLTLVALFVGLQLFGFLGLIIGPVSLVMINALVKANV 363


>gi|90424198|ref|YP_532568.1| hypothetical protein RPC_2700 [Rhodopseudomonas palustris BisB18]
 gi|90106212|gb|ABD88249.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisB18]
          Length = 368

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 89/342 (26%), Gaps = 2/342 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++   +L   ++       + + ++ G     +                 +  V +  LF
Sbjct: 27  VVFAGLLFFAWYFAATLFLIFAGILFGVFLNAVSELLGRLVGGGHGLRMTLVCVLLTGLF 86

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              L+        +   L + +     +              +          +      
Sbjct: 87  AGVLVLGGSTIADQAASLSNTIKSQIVNVKSFLDEHGVDTSFLDLGTPEPPGTAAQPRNL 146

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +       G   I     +  +  +    +   +I     F        + L      
Sbjct: 147 PSAGAIASGGGA--IVSQTLKLILGTIGAVGNFFIVIFLGLCFGAQPAIYRKGLLRSVPA 204

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            +     +I   + ++++   L   I       V      + G+P    LG+   ++A I
Sbjct: 205 RYRLKATEIVTAIGEMLKRWLLAQMITMAAVFAVTSIGLTIIGIPGAFILGIQAGLLAFI 264

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    +    + +   +          F        +    L P +    I +P    F 
Sbjct: 265 PTIGALLGGLIIVLASLASGWVAVASAFALFLAVHAMESYLLTPLIQQQAIDIPPGTLFA 324

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             +      GL GL +   LMA+  V+         E+   +
Sbjct: 325 TQILLGIVFGLWGLALALPLMAIAKVVMNHLSDDSAEHGAAV 366


>gi|167772872|ref|ZP_02444925.1| hypothetical protein ANACOL_04260 [Anaerotruncus colihominis DSM
           17241]
 gi|167664805|gb|EDS08935.1| hypothetical protein ANACOL_04260 [Anaerotruncus colihominis DSM
           17241]
          Length = 367

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/340 (16%), Positives = 115/340 (33%), Gaps = 7/340 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFA----PVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           Q ++       I   LYFL  +      P+   L I   + P   +   K        A+
Sbjct: 14  QTVLTIAYWASIGGLLYFLVRYLLVWTLPLFFGLAIAALTRPAALTLTKKTRLGEKSAAI 73

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV-LANQHGIPVPRWLSDIPGGM--WASE 121
           I+ +    L    L       + ++ EL+ ++  L  Q+  P+   L+    G+      
Sbjct: 74  ISLLLFYLLAAALLGLFLTILLAQLYELLDRLPVLYTQNIAPLLDRLAGWFYGLAGRFDP 133

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + L         +      +G   +   A+          ++ +F I+       + 
Sbjct: 134 GAEEGLERFSQAVSDAVRQAAVDGSAHLVTIAAGVAAKLPMLLITAVFSIVVSILTAANY 193

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            ++   + SL    +    ++  R + + I        I+     + L     L G    
Sbjct: 194 RAVGAAVCSLVPKRWQPRVRETQRFLRETIWKLVRAYIILLAITFVELSLGLGLLGFDYV 253

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + +  + A++ ++P     +        LI G         L     + ++   L P +V
Sbjct: 254 LPVAAVIAMLDILPLVGTGTILVPWGAALIAGGDMPGGIGLLLLFGVIEVLRNILEPRIV 313

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           GG I L  + T   +  G++  G  G+   PV++ L+  +
Sbjct: 314 GGQIGLHPIVTITSMYAGLKIAGFAGMLAAPVVVMLVRHL 353


>gi|146341139|ref|YP_001206187.1| putative transport protein/permease [Bradyrhizobium sp. ORS278]
 gi|146193945|emb|CAL77962.1| putative transport protein/permease [Bradyrhizobium sp. ORS278]
          Length = 392

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/358 (10%), Positives = 90/358 (25%), Gaps = 12/358 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++    L   ++       + S +++G     + +               I  +++ 
Sbjct: 34  IGVILFMAGLAFSWYYAAALFLLFSGMLLGVALNAMTTLLGRVLPWPHPLRLAIVCLALA 93

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +  +         + K L   +     +                 +       +   
Sbjct: 94  ALLVGIVFLGGTTIADQAKVLSDTIKSQLGNIKGFLDRNGIDTSFFDFNAGTQATSAPDG 153

Query: 132 SLKILSET------------FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                +++                +    I     +  +  +    +   ++     F  
Sbjct: 154 GSTTPTQSTSHGLPGGLPSPSALASSGGAIVSQTFKLLLGTVSAVGNFFIVLFLGLAFAA 213

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                   L  L    +      I   +   +    +          LV      + GV 
Sbjct: 214 QPAVYRSGLLFLAPAKYRDQATVIIDRISYTLERWLIAQITTMFAVFLVTWIGLAIIGVQ 273

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S   LG+   ++A IP    I    + +   +      A   F+       +    L P 
Sbjct: 274 SSFILGIQAGLLAFIPTVGAIIAGVIVVLASLASGWVAAVSAFVLFLGVHAMESYVLTPL 333

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +    + +P    F   +      G+ GL +   LMA+  V+        +      +
Sbjct: 334 IQRQALDIPPATLFAFQILLGIVFGVWGLTLALPLMAIAKVMIDYFKSDRRTEDAAAA 391


>gi|293375475|ref|ZP_06621754.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325842418|ref|ZP_08167677.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|292645875|gb|EFF63906.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325489646|gb|EGC92009.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 362

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/328 (13%), Positives = 108/328 (32%), Gaps = 10/328 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     P L A ++ +   P+      +          +  + +       + +     +
Sbjct: 45  IWSSLFPFLIAFLLAYVIHPLILCI-DRLRLPRVLSVFLFYLFIFGSLYGVISWFLPTIL 103

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E+ +LV  +    +                 +      + S   +L             
Sbjct: 104 RELHDLVMNLPTYLEAIQTQIMIFDQKFNLNVSQYFLGDYSSWMSTLTTHMRE------- 156

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I  +        +   ++II + IALF+F +D   +   L  +    F  +   I+ +
Sbjct: 157 --ITGWTFNMIFSIIGSLVNIIIVPIALFYFLKDFEKMMHGLLKIVPRRFRHHAVSIAGL 214

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + + + S   G+ +I +   ++      +AG+   +  GV+  +   IP   P       
Sbjct: 215 LDESLGSYIRGVFLIMVTLSIIATILLMIAGIDYALLFGVLIGLTDFIPFIGPFIGAIPV 274

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +   +  +      + +  AI   I    L+PF++G  + +  L     +V     MG  
Sbjct: 275 VVFALSISWNKVIIVIIILAILQCIEANFLQPFIIGRNLDMHPLLIMMIMVVAATIMGFQ 334

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKE 354
           G+F    +  +I    +      +++ +
Sbjct: 335 GVFFALPVFLMIRTFSRYLYSIKEKHLD 362


>gi|317485026|ref|ZP_07943908.1| permease [Bilophila wadsworthia 3_1_6]
 gi|316923561|gb|EFV44765.1| permease [Bilophila wadsworthia 3_1_6]
          Length = 353

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 58/331 (17%), Positives = 112/331 (33%), Gaps = 4/331 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R +    I   ++ L  F      A  +   ++P Y     K   S ++     TV 
Sbjct: 14  SMTRVLACLAIGAWVFLLWPFPITTFMATCMACVTYPAYRKLHRKM--SPSWAMTTYTVG 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + I+P+  +      +    +  +      G             + A       L  
Sbjct: 72  LAAITILPIATVVSLVTPQAVAGLKILDGLRDSGWIHSPEAQAWFASVDAWLKNLPGLEG 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +   L       +               L +   ++           I +   
Sbjct: 132 GLDQLASTAAGLAGTAARTVLAGGVGIAGGAFQAVLVLFLFVMITMMCVTRADLIHEFAC 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L +        +    + K I    +G+  +A+ +G + G  + +A VP     G+I A
Sbjct: 192 RLTQWPA-EVIDRFVSTIRKAIFGVLVGVVFVALIQGFLCGVGFAIAEVPQPAFWGLIAA 250

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +A IP     + +  V I+L + G+      L +W A+ +  VD  LRPF +   I   
Sbjct: 251 FVAPIPFVGTALVWLPVCIWLWLTGSTVACIGLAIWCALVVAGVDNLLRPFFLKTGIDAS 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            +     ++ G+   G +G+F GPVL+A+  
Sbjct: 311 VVTLILSILCGLAAFGPVGVFAGPVLVAVAI 341


>gi|322434917|ref|YP_004217129.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX9]
 gi|321162644|gb|ADW68349.1| protein of unknown function UPF0118 [Acidobacterium sp. MP5ACTX9]
          Length = 360

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/351 (11%), Positives = 106/351 (30%), Gaps = 21/351 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----KEES 58
                   I+ +  M ++ V  Y L      +  A +      P+      +     + S
Sbjct: 26  RKSAVRSNIVFFFAMILLFVLGYKLLKELEILYVAALFAVVLMPMVIWITERSIRSYKPS 85

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                ++  +S +    +         + +++  ++ +       +   + L        
Sbjct: 86  RPVAIILLLLSAVVFLGLFFTIAVPPVLTDLRNFLADLPARIPGAVAHLKKL-------- 137

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                         + +                +       +L +   ++  +    +F 
Sbjct: 138 ---------PLADKIGVDQIAAKAEAVAGATGSYIFSALPNWLSHVFDLLTALFLCIYFM 188

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            +G        S+             +     +     G  ++ +  G+     + +  V
Sbjct: 189 LEGEHAYNFFLSIVPLNSRRRLDVTLKKAELKMSKWLFGQGLLMLILGVTSTIVFGVLHV 248

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + LGV+  ++ +IP    +    ++  +    +      +F++ AI   I +  L P
Sbjct: 249 RYFILLGVLMGLLNIIPIAGGVVTILLAAGVAALDSWTKMAGVFIFYAIYANIENAFLTP 308

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            ++   + L  L     L+ G    G++G  +     ALIAV+ +E  +  
Sbjct: 309 RIMKSSVDLMGLTVLVALLLGTALAGIVGALVAVPTAALIAVLLEEYAVQR 359


>gi|206890655|ref|YP_002249261.1| hypothetical protein THEYE_A1463 [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206742593|gb|ACI21650.1| membrane protein, putative [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 357

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 78/336 (23%), Positives = 143/336 (42%), Gaps = 8/336 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+   I  +  ++   LK FFA    A++I     P++     K  +     AV+  + 
Sbjct: 18  WILLLFIGILGYLNYQILKSFFASAGWAIVIALVFHPVFDYL-KKFLKYRGLTAVVTIIL 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ LF+ P +++ Y  +LE  EL+  V     +   +   +   P      E  +     
Sbjct: 77  VIVLFLFPFVYVSYQIILEAGELIKGV-----NLPELINEIMSHPLLSKILEKLSFITGG 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +   +      +  +       +      L   L++I      FFF +DG    ++++
Sbjct: 132 DIASLEIIIKNELSGLLKEGALRIAHGFGDILSLFLNLILTFFIAFFFLKDGHHFVKKIE 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        I   +  +I +TF G  +IA+ +G +LG  ++   +PS    G  TA
Sbjct: 192 EFLP-FAEVDKTSIRNQIRNIIYTTFYGGILIAMLQGTILGITFYFLDMPSSTLWGFATA 250

Query: 250 IMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + + IP       +   SIYLL KG I     L + GA  + ++D  L+P ++ G +KLP
Sbjct: 251 VASFIPVLGAFAVWGPASIYLLAKGLIIKGLILAMVGAFIISLIDNVLKPLIIKGKVKLP 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +  F  ++GG++  GL+G  IGP++ +L     + 
Sbjct: 311 LIFIFLSVLGGIKIFGLIGFIIGPLVFSLFVSFLEI 346


>gi|162455165|ref|YP_001617532.1| hypothetical protein sce6883 [Sorangium cellulosum 'So ce 56']
 gi|161165747|emb|CAN97052.1| membrane protein, putative [Sorangium cellulosum 'So ce 56']
          Length = 485

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 65/197 (32%)

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           + R              ++   ++   +       I +    L        + +  R + 
Sbjct: 222 VLRIGQAIATAISRGIFNLFMTLMLAGYIILTHEKILRFFRELWHPTSRDSFDRFLRRLD 281

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +     G  +I +  G++    +WL  +     L V+  +M++IP    I  +  ++ 
Sbjct: 282 RGLSGVVRGQLLICLVNGVLSAIGFWLFDLKYWPILSVLAGVMSLIPIFGSILSSIPAVL 341

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + +  +   A  +  W      +    L P ++G   K+  +     L+ G     + G 
Sbjct: 342 IGLTQSFGTAVGVLAWIVGIHQLEANFLNPKIIGDAAKIHPVLVVLALLVGEHFFQITGA 401

Query: 329 FIGPVLMALIAVIWKES 345
                 ++L   I+   
Sbjct: 402 LFAVPCLSLAQTIFLHF 418



 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 9/100 (9%), Positives = 25/100 (25%), Gaps = 1/100 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + + +   +   +    L        P + AL++ +   P        +        ++
Sbjct: 5   PSQRTVFLTISAVLTAALLIVSHAVLLPFVLALVVAYVLTPAVLRLERARV-PRWAAILV 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
               V+              + E K L ++          
Sbjct: 64  VYALVLSGIAGFFALSVPRLVAEGKALTAEAPRLAARLRE 103


>gi|302339385|ref|YP_003804591.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
 gi|301636570|gb|ADK81997.1| protein of unknown function UPF0118 [Spirochaeta smaragdinae DSM
           11293]
          Length = 359

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 104/343 (30%), Gaps = 14/343 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFA-PVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +  +  F++    Y L       +     +              K         +++V +
Sbjct: 28  LAILAYFLLFCLAYILSPTITGALTLGWYLSLIIEVPARGLYKIKIFPYRLAITLSSVII 87

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I  +  +    + E ++L   +  +      VP  L   P G    +   + +S  
Sbjct: 88  FSILIFGISGIIPIILDEGRKLFPVLRDSFLSL-SVPDALRQNPFGQELMDGIRQAVSSL 146

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     +  +    +P  ++                +I   +F        + L  
Sbjct: 147 MQKTAEFGVIIVNDIFQRLPGISTSLI-----------IFVITAAYFTSLLPVFKKNLWR 195

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +     V   IR    G  I+A+  G+ +     L G+P  + +G ++A+
Sbjct: 196 FLPASGRERARSFLSEVYGDIRHFIAGQMIVALFVGVAVWLGMLLVGIPYAMFIGFLSAL 255

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              IP    I     S+ L L  G +     + L            L P + G  +KL +
Sbjct: 256 TNFIPYMGIIVAAVPSLILGLSHGGLIGLLKVTLVLVAVNQFEGWVLSPKIQGSRMKLNW 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                 ++     +G++G+ I   L+      W   +    +N
Sbjct: 316 FAIILAILLSGTLLGVVGILIAIPLVVFFKRFWIWYVQEALQN 358


>gi|208778982|ref|ZP_03246328.1| hypothetical membrane protein [Francisella novicida FTG]
 gi|208744782|gb|EDZ91080.1| hypothetical membrane protein [Francisella novicida FTG]
 gi|328676661|gb|AEB27531.1| hypothetical protein FNFX1_0583 [Francisella cf. novicida Fx1]
          Length = 341

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 122/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 70  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 130 KDMIISNLGKILPTIRYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLKDF-- 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 188 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|323136769|ref|ZP_08071850.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322398086|gb|EFY00607.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 346

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 105/342 (30%), Gaps = 17/342 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +       ++ +  + L  F   V + ++I         SF ++    +    +   ++
Sbjct: 22  TVSIAAAAIMLGLLFWRLSEFLPIVFATIVIAVAWRGAAESFGARFGIPTGLSILTVALA 81

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +V L+      + +  E+   V  A +                            
Sbjct: 82  LVVGVVVTLMAFGGQLVRQYDEVALDVPAAIELIQRHVEEHPWGRFVEKFVLDVDY---- 137

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                        +     I +          +     +F II   +   D    ++++ 
Sbjct: 138 -------------SKAAAPIAQHVGAALGSLGNAFAMTLFAIIGAAYLAADPKGHAERVV 184

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L          +  +     +R   +    + +      G A W  GVP+ +AL  I+ 
Sbjct: 185 ALTPAHHREKVSRFLQRSGGSLRQWLILQLYVIVMNAFFAGVALWAFGVPAPLALATISG 244

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +A IP    I    V   + +   + +A    L      F+    + PFL    + +P 
Sbjct: 245 ALAFIPYFGSIIALVVGALVALPHGVDSAALAALSIGAASFVEGYLITPFLQSRSLSVPA 304

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +   F ++      G +G+ +      +++V ++      K 
Sbjct: 305 VVLLFCMLAFGALFGAMGVVLAVPATVVLSVAYEVFAETQKA 346


>gi|167648743|ref|YP_001686406.1| hypothetical protein Caul_4788 [Caulobacter sp. K31]
 gi|167351173|gb|ABZ73908.1| protein of unknown function UPF0118 [Caulobacter sp. K31]
          Length = 373

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 102/344 (29%), Gaps = 25/344 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  +  + ++ +     +LY+++G   P+  A+ +           + +       LA+ 
Sbjct: 7   ITGRNALVFLAVVAGGAALYWMRGILTPLAMAVFLAVMIDSFARVLVLRVPRFPRSLALP 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                + L I       +         V ++         V   ++ + G   A  +   
Sbjct: 67  T---AIVLSIGMFAAAVWVVTSNGAGFVGQIRDYAPRLNEVIAKIASLVGVKVAPTIGDL 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 S                   +A        ++  S I ++I L F        +
Sbjct: 124 INQLNPS------------------AYAGAAAQSLQNFASSAILVLIYLGFIIASRRGFN 165

Query: 186 QQLDSLGEHLF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +++ +L  H        ++ + +   +       T+  +   +       L  + + +  
Sbjct: 166 RKIVALYPHHAERDGAMQLFQRIRNGVEQYLWIQTVTGLMIAIAAFVVMMLLRLDNALFW 225

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             +  + A IP         +           + + A  LF    +  F+V   + P + 
Sbjct: 226 AFLIFVAAYIPIIGGAIGCILPPLFALVQFPDSFWPALILFAALELIFFVVGNVIYPRMQ 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           G  + +        L       G+ G+F+   L   + +I  + 
Sbjct: 286 GDSLNIDPTVVLLSLAVWGALWGVTGMFLSTPLTVALMLIMAQF 329


>gi|33865598|ref|NP_897157.1| hypothetical protein SYNW1064 [Synechococcus sp. WH 8102]
 gi|33632768|emb|CAE07579.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 358

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 115/325 (35%), Gaps = 2/325 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+ +   + +A+++      + ++   +         + +   +  L  V +  L   
Sbjct: 20  WNLRQWLLLLFAAIVLALALCSLVNAVQRRFPMRRPMALLASLSGLGLLLTVLMAVLVPP 79

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLK 142
            + E   L+ K+  A +  + +     D           +        QS  IL +T   
Sbjct: 80  FIDEFALLLQKLPQAARALLQLALSGLDQVSEALYGVDAMPDLEQLGLQSQSILPDTSTL 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +G+                  LS++F+I A         +  Q    L    +     +
Sbjct: 140 ASGVGSGLIGLLGLAGNLGSAGLSLLFVIAAALMVAVQPQAYRQVGILLVPSFYRRRANQ 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I  +  + + S  +G+ I ++   L+ G A WL GV   +A  ++  ++ +IP   P   
Sbjct: 200 ILTLCGEALNSWMVGVGISSLAVFLLCGIALWLLGVKLVLANALLAGVLNVIPNVGPTMS 259

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           T   + + +    + A  +     +   +    + P ++   +KL    T    V     
Sbjct: 260 TVFPMAVALLDAPWKAAAVLGAYVVIQNLESYVITPSVMHHQVKLLPGLTLAAQVLFTVV 319

Query: 323 MGLLGLFIGPVLMALIAVIWKESIM 347
            G LGL +   L  ++ V+  E ++
Sbjct: 320 FGPLGLLMALPLAVVLQVLIGEVLI 344


>gi|331003207|ref|ZP_08326714.1| hypothetical protein HMPREF0491_01576 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412860|gb|EGG92240.1| hypothetical protein HMPREF0491_01576 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 371

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 114/333 (34%), Gaps = 12/333 (3%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEES-------STFLAVIATVSVMCLFIVPLLFLFY 83
             P ++  I+ +    +   +     +         T    ++ ++ + + ++ L  +  
Sbjct: 40  LVPFVAGAIMAYIINILMDFYEDLLLKKFHNKKIIRTVAIALSIITFVLVIVLLLGLIIP 99

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             +  +  ++          I        I   + +  +  K+++    L  L +  +  
Sbjct: 100 QLIKIITSIMYVKPDYINSLISDIGNNKFINDILSSMNIDIKNINIASYLTRLIQNVM-- 157

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYW 200
           +G+  +          F +  +S+   ++   +   D   I+ Q D L            
Sbjct: 158 SGVGNVLTGVISGISGFFNTVISLFMAVVFAIYILVDKERIALQGDKLLRAFMPSQRETV 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
               ++     ++ F+     AI  G++L     +A +P   ++ ++  + A+IP     
Sbjct: 218 IDTLQVFNTSFKNYFISQVKEAIILGVLLYIVMLIARLPYASSISILVGVTALIPVIGAY 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +   +   +++  ++ +     +   I     +  + P +VG  + LP +     +  G 
Sbjct: 278 AGLFIGALMILTKSLQSMVIFIILHTIVQQFENNVIYPRVVGSSVGLPGMWVIVAVALGG 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              G+ G+F+   + A +  I K        + 
Sbjct: 338 SMGGIFGVFVAVPVAASLYFILKRETEKRLSDN 370


>gi|302548373|ref|ZP_07300715.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302465991|gb|EFL29084.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 401

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 99/343 (28%), Gaps = 15/343 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +++    L   +     V  AL+      P+                 +A  
Sbjct: 73  RLLAVGVAVYLAFTVLGRFQLVAVAVFLALVGTALLRPLADVLARWL--PRPLAVALAVF 130

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  L  +      E   LV +                        + L  +   
Sbjct: 131 GSLLVVLGLLALVGSAAAGEAGRLVGEFRGGIGRITRWLEGPPFHVRHRTLTGLHDRI-- 188

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     +   +     +   A       ++   + +  +    FF   G  + +  
Sbjct: 189 ----------SSFVSAHRATLISRALSSAGRVVEALTAAVLALFCSLFFVHSGDGMWRWF 238

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    + W +  R           G+ ++A     ++G A  L  VP  + L ++ 
Sbjct: 239 REQLPEAARSPWDRAGRAAWNTFAGYTRGIILVAAANAALVGLALLLLRVPLALPLTLLV 298

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP    PI+    ++  L       A  + +   +   I    L P ++G  ++L
Sbjct: 299 FFFTFIPLIGSPIALAVATVVALAGRGPVIAAVVLVLIVVVGQIEGHVLHPLVMGWAVRL 358

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             +     ++ G    G++G  +   ++++   + +      +
Sbjct: 359 HPVVVAISVIAGGIVAGVVGAIVAVPMVSVAWSVTRALRTPSR 401


>gi|254448016|ref|ZP_05061480.1| permease, putative [gamma proteobacterium HTCC5015]
 gi|198262442|gb|EDY86723.1| permease, putative [gamma proteobacterium HTCC5015]
          Length = 352

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 107/347 (30%), Gaps = 13/347 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   +  I  +  + ++     ++ A+       P+ +  +     +      +  + ++
Sbjct: 17  LFTALCLITALLAWLIRPLILHIVFAVSWYILLHPVTARLVHW-GFTPNAAVGLVLLGLL 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L ++         + ++ +L + +      G      +S      +   L  + LS   
Sbjct: 76  ILSVLSGALFLPLVLEQLSQLQTNLPNMLDQGQQWLDQVSQRFSQQFGLPLSVEVLS--- 132

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    L             +   + L      + + +  +F  RD  S+   +   
Sbjct: 133 -------KPLVDWASGGSKNALLQVSNMALTLVSLALIVPLLAYFLLRDYRSLRNHVMQW 185

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +        I   V   ++    G+ + +    L+  + +   G+   V LG++T ++
Sbjct: 186 VPNSQFELAWLIYYRVAHQLQDYVRGVLVQSGIMALITTTGFAFFGIEMAVLLGLLTGLL 245

Query: 252 AMIPGGAPISFTAVSIYLLIKGN--IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +IP   PI        ++I        A            + +  + P  +     L  
Sbjct: 246 NIIPYLGPILAMIPPCLIVIGSGADPSLALAAIGVILFAQLVDNTVVVPAFIANVADLHP 305

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           L    G+       G +G+ +    +    +++   +  ++  +  +
Sbjct: 306 LVVILGVAIFGHFFGFIGMVLAIPALFSAKILFSGLVQGMQYRQNPV 352


>gi|315633635|ref|ZP_07888925.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
 gi|315477677|gb|EFU68419.1| PerM family permease [Aggregatibacter segnis ATCC 33393]
          Length = 351

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 110/347 (31%), Gaps = 20/347 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +     + ++    + IIL  +        P L +L I     P  +    KK     
Sbjct: 1   MEKHASLVKALVACAAIVIILAGIKAASEIVVPFLLSLFIAIICSPSLNYLTKKKV--PY 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            LA+   +++  +    L  L    + E  + + +                    G   +
Sbjct: 59  GLAIGLLLALTLIVFFFLFGLINSTIQEFSQSIPQYRQLL---------------GERVN 103

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L     S    L I  ++ ++      I  F  R  + F     +I  +++ + F   +
Sbjct: 104 SLVALSQSLKIPLDISEKSIMEHFDPSVIMNFVRRVFLSFSGVVTNIFVLVLVVIFMLLE 163

Query: 181 GFSISQQLDSLGEHLFPA--YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                 +   +           ++    + + + S     T++++   + +     + GV
Sbjct: 164 APYAKHKFAVVFSSDSKEISQQERYLDRILQGVISYLGVKTMMSLLTAICIWLLLEIVGV 223

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              +    ++ ++  IP    I      I   L+         + +       I+   L 
Sbjct: 224 QYAILWATLSFLLNYIPNIGSIIAAIPIIVQALLLNGFVVGLEVIIGVIAINMIIGNVLE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P L+G  + L  L  F  L+     +G +G+ +   L   + +  + 
Sbjct: 284 PRLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALEA 330


>gi|297529302|ref|YP_003670577.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
 gi|297252554|gb|ADI26000.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
          Length = 341

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 112/337 (33%), Gaps = 2/337 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           RWMI+ ++     +L  +  P+L AL       P         +              + 
Sbjct: 3   RWMIIALLFAVGLWLVPYSVPLLFALATALLLEPSIRRLQENYKLKRVHAVTAIFSLFII 62

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  + L FL    + ++  L  K+         V   L        +S       S  + 
Sbjct: 63  ILGLSLYFLVVIFVQQVMALSQKLPYVLNEATKVLDRLIQTWQSYSSSIPQEIIDSLERG 122

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +  + +  L  +    + +    +      + +  +  +IALF    D   + Q +    
Sbjct: 123 VNTVEQMLL--SFATNLTQSLVHYIAAIPAFLIHFLVYLIALFLICLDLPQLKQGMRRYL 180

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   + K          ++++    +  S  ++ GV     + ++  ++ 
Sbjct: 181 SERTEQRLGMVVAQLSKAGIGFLKAQFLLSLITFFLALSGLFVLGVDYAALMALVIVVVD 240

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P     S       + +           +   + + +V + + P +    + +  L  
Sbjct: 241 ILPILGTGSVLVPWGLISMANGNNTLGIGLIVLFVVITVVRRIIEPKVFSTNLGISPLAA 300

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              +  G + +G +GLF+GPV++ L+  + K  ++  
Sbjct: 301 LVSVYLGFQLLGFIGLFVGPVVVILVEALAKAGVIKW 337


>gi|313900143|ref|ZP_07833643.1| sporulation integral membrane protein YtvI [Clostridium sp. HGF2]
 gi|312955195|gb|EFR36863.1| sporulation integral membrane protein YtvI [Clostridium sp. HGF2]
          Length = 358

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 83/298 (27%), Gaps = 3/298 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L   +I F   P+     +         + I  +         +  LF  G   +K
Sbjct: 34  IMPFLIGFLIAFMLRPLIKRLTALSGGHEKLWSSIVILVFYATIGAFVTLLFMKGFAFLK 93

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASEL---WTKHLSHPQSLKILSETFLKTNGID 147
           + V  +    Q  +      +         E+     + +         S   + ++   
Sbjct: 94  DFVEDIPRLYQQNLEPFLNDTLGNVESVWKEVDITGAQAIQSFLDGLQSSLYSIISSLSK 153

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +    + F     +  ++  F II+ FFF  D   I                       
Sbjct: 154 HLVSLFTGFASSLPNLLIAFFFAIISSFFFNADYPRIIAFFIRQLPEKGAQIVFTSRHYF 213

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
              I    +    I +     L     + G+ + + +  + AI  ++P           I
Sbjct: 214 TDTIARFAVAYGKIMLLTFFELTIGLHILGIENALVIAFLIAIFDVLPVLGTGGIMLPWI 273

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +    N        L   + + ++   + P +VG  I L  L     +  G R  G 
Sbjct: 274 LISFLNNQVKTGVGLLILYLVITVIRNIIEPKIVGKQIGLHPLLMLMCMYLGARLFGF 331


>gi|325287380|ref|YP_004263170.1| hypothetical protein Celly_2482 [Cellulophaga lytica DSM 7489]
 gi|324322834|gb|ADY30299.1| protein of unknown function UPF0118 [Cellulophaga lytica DSM 7489]
          Length = 339

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 60/355 (16%), Positives = 130/355 (36%), Gaps = 21/355 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              +  Q  +  +I+ +  +    +  + + VL A+ +            +K    +   
Sbjct: 5   SPHIIRQIFVLLLIVLMGGLIFKEILPYLSGVLGAITMYVILKKPMQKLANK-GWYANIA 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A+   +      ++PL  L +    ++K  V         G    + +         +E+
Sbjct: 64  AIFLMILSFLCIMIPLTGLGFMMGSKIKYAVDNSQKVINAGKNQLQKVESFLHIDLGTEI 123

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                               ++  +++      F     +  +SI  M   L+F   +  
Sbjct: 124 D------------------TSSITNWLSDKLQNFAGGTFNMVISITIMYFMLYFMLTNRK 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + + L            K I + +   +++  LG+ ++A+G+GLV    +++ G+    
Sbjct: 166 KLRESLFEYIPIK-DTNLKTIGKEITANVKANALGIPLVALGQGLVALLGFYIFGIEDPF 224

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               +  I +MIP     +    V I  L  GN F A  + ++G + +   D   R +++
Sbjct: 225 FWAAVVTIGSMIPFVGSALGTVPVFILALSNGNTFQAWGILIYGLVAIGATDNIFRLYIL 284

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                +  L T  G++ GV   G +GL  GP+L++L  V+ +       E+   I
Sbjct: 285 KRLDDVHPLITLVGVLVGVPLFGFIGLIFGPLLVSLFLVVVRIYKNQYGESGNSI 339


>gi|15836886|ref|NP_297574.1| transport protein [Xylella fastidiosa 9a5c]
 gi|9105100|gb|AAF83094.1|AE003881_7 transport protein [Xylella fastidiosa 9a5c]
          Length = 389

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 107/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI  +    +   +    ++  + + 
Sbjct: 52  LVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALLLLCLGIS 111

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++ +                      Q      R L+     +              
Sbjct: 112 GTAVLSVELAGP------------ASEWIQQAPDKIRQLARQVRHLTKPMQQANQAVESL 159

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +     ET  ++  +           M      +S++ +I+  FFF   G  + ++  +L
Sbjct: 160 ARAADGETERQSQTVRTRLYNPYTLLMDTHKLVISVLGVILLTFFFMVFGEKLQRKAIAL 219

Query: 192 GEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
             +     +   I R +   I    L +++I    GL+      L  +     +  G + 
Sbjct: 220 LPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEALLWGTVV 279

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + +   L+       A    L   +   +  + + P ++G  + 
Sbjct: 280 ALLNFAPYVGPLIGVLLMLLIGLVQFHESSKALLPALLYLMLHTLEGQLITPIILGHRMA 339

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      GL+GL +   ++  I ++ 
Sbjct: 340 ISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMVL 375


>gi|332187090|ref|ZP_08388830.1| hypothetical protein SUS17_2225 [Sphingomonas sp. S17]
 gi|332012790|gb|EGI54855.1| hypothetical protein SUS17_2225 [Sphingomonas sp. S17]
          Length = 364

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 99/322 (30%), Gaps = 20/322 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                     +++       I   +             ++ V+V+ +             
Sbjct: 33  AGNLMILAFGSVLGAIVIHAIADLYADHLPLGPKRSLTLSIVTVLAVLGFLAWLFGVAFR 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++  LV+++ +                             S       + +        
Sbjct: 93  QQLNTLVTQLPILLDQLAGW--------------------ASQSPVGAKIVDAVRAAYAG 132

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +  S       ++ L+ + +++   FF  D     +    L  H      +     
Sbjct: 133 SRVAQDISGIVSGAGEFVLNCLLLLVGALFFAADPKVYERGFLLLIPHSMRPAIEDALFD 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               +R       I     G+++G    +AGVPS  ALG++T +   +P   PI+    +
Sbjct: 193 TESTLRLWLRAQLIQMTTMGVLVGIGLGIAGVPSAAALGLLTGLSEFVPYVGPIAAMLPA 252

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + L  +G         +  A+   I    + PF+    + +P   T F ++      GL 
Sbjct: 253 LGLAAQGGNGAVIGTLVTFAVVRLIQTNAITPFVTSRVVAIPPAITLFAIIAIGTIFGLF 312

Query: 327 GLFIGPVLMALIAVIWKESIMA 348
           GLF    ++ ++  + +   + 
Sbjct: 313 GLFFSAAILVVVFTLIRSLYLR 334


>gi|78212727|ref|YP_381506.1| hypothetical protein Syncc9605_1196 [Synechococcus sp. CC9605]
 gi|78197186|gb|ABB34951.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 359

 Score =  101 bits (251), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 116/347 (33%), Gaps = 4/347 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M  PQ ++    +  I++     +     + +A+++      +      ++        +
Sbjct: 1   MRLPQWLLLTAFIAAIVLLWSLREL-LLLIFAAVVLAMALCTLVGILRERRPMQRPLALL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWASELW 123
           +  V ++ L       +    + E   L+ K+  A Q  + +   W+ +I   ++ ++ +
Sbjct: 60  LCIVGLLLLVAGAAGVVVPPFLEEFALLLQKLPEAGQTLMRLGLGWIDNISEAIYGADAF 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY--CLSIIFMIIALFFFYRDG 181
                   S          +             G+        L ++F++          
Sbjct: 120 PDLDDLGLSGPRQLVPDGSSLAAGLGSGVLGLLGLAGNLGNGILRLLFVLAVALMISIQP 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +       L    +    ++I       + S  +G+ I ++   ++   A  L GV   
Sbjct: 180 QAYRNIGLQLIPSFYRRRGRRILDQCGAALSSWMVGVLISSLAVFVLCSIALTLLGVKLV 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +A  ++  ++ +IP   P   T   + + +    + A  +     +   I    + P ++
Sbjct: 240 LANALLAGLLNVIPNVGPTMSTIFPMAVALLDAPWKAAAVLGAYVVIQNIESYVITPSVM 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +KL    T           G LGL +   L  ++ VI +E ++ 
Sbjct: 300 HHQVKLLPGLTLAAQFLFTLLFGPLGLLMALPLAVVLQVIIREVLIH 346


>gi|283853406|ref|ZP_06370652.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283571219|gb|EFC19233.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 370

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 104/338 (30%), Gaps = 7/338 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   + +  W   F ++    +  G F  V    I+ F          ++ +   T  
Sbjct: 7   QILRTNKTLAIWAAFFGLVWLASY-YGLFGLVFITYILCFLFNGPIERLAARTKLPRTLW 65

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           AV+  +  + + +     +      E    + K+    +         + +   M A   
Sbjct: 66  AVVVYLIFVAMVLTIASSVLPKLGSESTAFLKKLPDTLETLRQRLDAWAWLAPDMAAPIS 125

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K     ++L  +    L    ++   +  +      L    S + M+       R   
Sbjct: 126 KIKDYLALEALVGVKAETLFVIAVNSFNQITTYISTFLLGTLFSFLIMLDFPNLRARTIA 185

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +L  + +    +           V+   F    +IA    ++      + G+   +
Sbjct: 186 LRDSRLRDIYDVTARS-----VIRFAVVVGMGFRAQMMIAALNTILTAIGLVILGIQPVM 240

Query: 243 ALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L  +     +IP     IS   + +  +   +  +A    +   +   I    L P +V
Sbjct: 241 LLSTVVFFCGLIPVLGTFISSAPIVLVAVNTVSPGHAVWAIVMIILVHTIETYVLNPRIV 300

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               K+  L T   L  G +  GL G+ +G  +   + 
Sbjct: 301 AAMFKISPLLTLVILYVGHKLFGLWGMVLGVPVSVFLL 338


>gi|294507665|ref|YP_003571723.1| hypothetical protein SRM_01850 [Salinibacter ruber M8]
 gi|294343993|emb|CBH24771.1| conserved membrane protein containing DUF20 domain [Salinibacter
           ruber M8]
          Length = 363

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/322 (9%), Positives = 92/322 (28%), Gaps = 16/322 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L      V + +++      +                 +  + +  + +           
Sbjct: 45  LVEVLFTVFAGILLAVFLAGVTQELTEDTRLPRPLAVALTLIGLGGVLVGLWALAGPDIS 104

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +   L + +  A +      R      G M      ++ L                  +
Sbjct: 105 EQASALATLLPDAAERLASRIRTTVQRYGWMQRYVDPSQLLPP----------------V 148

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +      L+  ++   ++    +      S    +  L         + +   
Sbjct: 149 SSVLGRVTNVFRDTLNLLVNGFIILFIGIYGGAAPQSYLDGVVQLVPPSSRPRARDVLSA 208

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + + +R    G  I+ +  G++      + G+PS +ALG++ A+ + +P   P+     +
Sbjct: 209 LGRALRWWLTGRLILMLIVGVLTAVGLKVVGIPSPIALGLLAALFSFVPYLGPVLSVLPA 268

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + +           + L       +    + P +    + +P          G  + G  
Sbjct: 269 LLVASLIGPTEVLYVILVYGAVQLLESYLISPLVQQQAVHIPPATVITAQFIGGVSAGAG 328

Query: 327 GLFIGPVLMALIAVIWKESIMA 348
           G+ +      ++ V+ +   + 
Sbjct: 329 GVLLATPFAIVVIVLVQTLYVE 350


>gi|257054884|ref|YP_003132716.1| putative permease [Saccharomonospora viridis DSM 43017]
 gi|256584756|gb|ACU95889.1| predicted permease [Saccharomonospora viridis DSM 43017]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 102/358 (28%), Gaps = 18/358 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  +++ Q ++ +  ++ +      L     P+  AL+      P+ S  +  +      
Sbjct: 15  RAAVISAQFLILFAALWALRNIGKHLSYVIIPLAVALLFTAVLEPVVSWLVRHRWPRP-L 73

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V A +    +    + F+ +  +    EL  +V+ + +                    
Sbjct: 74  AVVAALLFGFVIVGGLVAFVVFSVIDSYDELRRRVLESIEQLRSWLS------------- 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              +         +           D +             + + ++  ++    F   G
Sbjct: 121 ---QSPFPASGELLGRVQNWIGGNQDTLVSQTLTAFSTVGSFFVGLLIALVLFIMFLHAG 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +                  I R   + +        ++A+ + + +G    + GVP  
Sbjct: 178 PRLWAATLLPWRPSTRELLDSIGRRAYRGVVIYVRVTALVALIDAIGIGIGLAIVGVPLT 237

Query: 242 VALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           V L  +  I   IP    +          L+      A  +     +   +  + L P L
Sbjct: 238 VPLAALVFIGGFIPYIGAVVSGFLAVAVTLVSNGFVPALIILGVVLLVQQLEGQVLHPIL 297

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G    L        LV G    G+ G+     L+A I            + +E+  +
Sbjct: 298 QGNFTSLHPAVVLVALVIGGAEGGIAGVLFAVPLLAAIRGAVLAYAEHRAKEEERAKA 355


>gi|269956268|ref|YP_003326057.1| hypothetical protein Xcel_1468 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304949|gb|ACZ30499.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 368

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 93/307 (30%), Gaps = 13/307 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            ++  ++  F  V  AL++     P+   F         F   +  ++ + +    + ++
Sbjct: 33  FAVVHVRLVFIAVFLALVLTSVLRPLTDWFAR--VVPRPFAIGLTFLTALIVVGGLVTYV 90

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 + + L  +        I                 L         +  + +    
Sbjct: 91  VASVAGQWQTLGEEFTDGVDQIIGWLAT----------GPLRLDISPEAFTDALEAARQW 140

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             +    +    ++     ++    +   I    FF   G ++ +   +         W 
Sbjct: 141 IADNAADVAGQTAQTVGTVVEAFAVVALAIFCTVFFLLQGGAMWRWFLTQVPAGHRDRWD 200

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PI 260
             +    +       G  IIA+  GL+ G    + G+P    L V+  I   IP    P 
Sbjct: 201 GAATAGWETFAGYARGTVIIALTNGLMAGVFLAILGIPLAAPLAVLVFIGTFIPLIGAPA 260

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +     +  L       A  + L  A+   I    L+P ++G  + L  +     +  G 
Sbjct: 261 AMVIAGVVALAAEGPVKALIVILGVALIGQIEGHLLQPLIMGKQVALHPVIVAVAIATGT 320

Query: 321 RTMGLLG 327
              G+LG
Sbjct: 321 VLAGILG 327


>gi|89891578|ref|ZP_01203082.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
 gi|89516125|gb|EAS18788.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 124/351 (35%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +F++L  ++ ++     +  A +I     PI      + +  +T   +I  +
Sbjct: 17  RALLIIGGVFVLLWFIWKIQSVLLYIGIAAVISLIGRPIVVFLRDRLKLHNTLAVIITIL 76

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ +       +    + + + L           I +     ++         +     
Sbjct: 77  FILIILTGVTYMIIPIMLEQGENLSR---------IDIEEVKGNLEVLNIEISEYFGIKR 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                +I    +++   ++ IP+F +       +  + +  ++   FF  +D   + + +
Sbjct: 128 VNIFERIQGLEYVQNFDVELIPQFVNGIFGTLGNIMIGLFSVVFIAFFLLKDSRLLVEGV 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +      + +    + K++   F+G+        ++      + GV + + +    
Sbjct: 188 LVFSKKGTEGQFLRAFNKIKKLLSRYFIGLVFQVFVLFVLYSIILLIVGVENALIIAFFC 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIF---------NATCLFLWGAIELFIVDKTLRPF 299
           A++ +IP   P   + + +  +I  N+              + +  +I   I +   +P 
Sbjct: 248 ALLNLIPYLGPAIGSILMMGFVISDNLGADFTETILPKLIIVAIGYSIVQLIDNFINQPL 307

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  ++      G+LGL +       + VI KE +   K
Sbjct: 308 IFGKSVKSHPLEIFIIILIAGLLFGILGLVLAIPTYTALKVISKEFLSEYK 358


>gi|282863867|ref|ZP_06272925.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
 gi|282561568|gb|EFB67112.1| protein of unknown function UPF0118 [Streptomyces sp. ACTE]
          Length = 351

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 92/300 (30%), Gaps = 18/300 (6%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P++     + + + +  A +   +++ +       +    +    ++VS +  A Q    
Sbjct: 58  PVHRWLTGR-KVNRSLAAGLTCAALVAVVGGAGYIVVTALIDSGDQIVSSLKQAAQ---- 112

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                       W  + +             +   L                 +      
Sbjct: 113 ------------WVIDHFHIDGVANPDDLADNTKGLVDKFGASAAGGLLTGISLLTTLGA 160

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           + +  ++  FFF RD    +     +         + + R   + ++    G T+IA+ +
Sbjct: 161 TAVLALLLTFFFLRDSDRAAHLAHVVAPRGTGDLVEAMGRRAFEAVQGFMRGTTLIALID 220

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLW 284
            + +     +  VP  V LG +  + A IP         VS+ + +       A      
Sbjct: 221 AVCITVGLLILRVPGAVGLGALVFVGAYIPYLGAFVSGTVSVLVALADRGFVIALWALGV 280

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   +    L+P +    +++        L  G    GLLG+ +     A +  +  E
Sbjct: 281 VLVVQLLEGHVLQPVIQSRTVQMHPAAILVALTAGASVAGLLGMLLAVPFCAAVFGVIGE 340


>gi|183221243|ref|YP_001839239.1| putative signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911334|ref|YP_001962889.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776010|gb|ABZ94311.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779665|gb|ABZ97963.1| Conserved hypothetical protein; putative membrane protein; putative
           signal peptide [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 369

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 126/359 (35%), Gaps = 15/359 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--- 57
           M       + I+  ++  I L + + L   F P L A  +    +        + +    
Sbjct: 1   MNWITNKNETIVYILLAGIFLATCFTLFFVFKPFLWASFLALLFYLTTRKIHKRLKNVLG 60

Query: 58  --SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                    I  + ++    +P   +    + E   LVS V         V   L+    
Sbjct: 61  VKFHGLSPYIMVILMLACVFIPSYLIVSTLIRESLNLVSYVRNQLTEESIVALLLNSPIL 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFI-------PRFASRFGMIFLDYCLSII 168
             + +E     +  P   +      +    +D I         F      +      +  
Sbjct: 121 TDFFTENEFFWIKLPIMYREYVGQHMDILNLDSIYSLLKNSSGFLLGSFEVPGAIIFNGF 180

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
           F  I LFF Y++G  +   L  L         +++ R + + IR+  +G   I++ +G +
Sbjct: 181 FTFILLFFLYKEGSRMEHGLFLLLPFPT-EIEERLGRRIEEAIRTVMMGNMFISLLQGAL 239

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGA 286
           +        V +   L  I  I ++IP                L++ N   +    + GA
Sbjct: 240 VYFLLLFTSVSNKFLLSSIATIFSLIPVVGTSVVWFPIGLYMGLVQENWTGSVLFMIAGA 299

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               I++  ++P ++   +K      F  L+GG++  G+ G+ IGP+ + L+ ++W   
Sbjct: 300 ASYLILENFVKPKILDKKLKTHPFLIFLSLIGGLQEFGVAGIIIGPMALTLVIILWDFW 358


>gi|300785800|ref|YP_003766091.1| hypothetical protein AMED_3910 [Amycolatopsis mediterranei U32]
 gi|299795314|gb|ADJ45689.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 405

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 96/314 (30%), Gaps = 21/314 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F  PV  AL++  T  P+ +    +K         +  V+V  + +   L          
Sbjct: 90  FAGPVFLALVVVLTLDPVRTWL-RRKGWPRWLTVGVLVVTVYAILVGFFLVFVVSVA--- 145

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +L + V         + R   ++ G    SE           L+ +  +      +   
Sbjct: 146 -QLSALVPRYTGQVDELVRDGLNVLGRFGVSEP---------ELRAMVSSLDTGKLVGLA 195

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +  G +  +       ++         G  + +            +     R    
Sbjct: 196 GSLLASVGGLVTNLAFLFALLLFLSAETAWAGQRLGRIAR------DRPWISAALRSFAS 249

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT-AVSIY 268
             R   +  T+       +  +A  L GVP  +  G++  +   IP    +      ++ 
Sbjct: 250 GTRRYLVVTTVFGALVAALDTTALALLGVPGALLWGLLAFVTNYIPNVGFVIGVAPPAVI 309

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+ G   +   + +  A   F+V   ++P  V G + L  L T   LV     +G LG 
Sbjct: 310 ALLDGGWGSLLVVLVVYAGLNFVVQSLVQPRFVAGSVGLSTLVTVLALVFWTWLLGPLGA 369

Query: 329 FIGPVLMALIAVIW 342
            +      L   + 
Sbjct: 370 ILAVPATLLAKALL 383


>gi|224538267|ref|ZP_03678806.1| hypothetical protein BACCELL_03158 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520127|gb|EEF89232.1| hypothetical protein BACCELL_03158 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 348

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 131/329 (39%), Gaps = 20/329 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K++   +  A + T   +  F+VPL    +  +
Sbjct: 37  ITPFLGGLLGALTIYILVRRQMIHLTDKRKMKRSVAATLITTEAILFFLVPLALAVWLLV 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++++                  +  P  + A      ++   ++   +      +  I
Sbjct: 97  SKLQDI------------------NLDPQSIIAPIESAANIIKEKTGYDVLGKDTTSFII 138

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +P            + +++  ++  L+F    G  + + +  +      A  + +   
Sbjct: 139 SALPAIGQFVMGSISSFAVNLFVLVFVLYFMLIGGQRMEKYISEILPFS-EANTEHVVHD 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAV 265
           +  ++ S  +G+ ++AI +G V    YW   VP  +  G +T +  +IP     + +  +
Sbjct: 198 IKMIVHSNAVGIPLLAIIQGGVAMIGYWFFDVPDILLTGFLTCLATVIPMVGTALVWFPI 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++Y+ + G++FN   L ++G + +  +D  +R  L      +  L T FG+V G+   G 
Sbjct: 258 AVYMALSGDLFNGIGLAIFGTLIISQLDNLIRFILQKKMADIHPLITIFGVVIGLSLFGF 317

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +G+  GP+L++L  +          + K+
Sbjct: 318 MGVIFGPLLLSLFFLFVDMFKREYLDGKK 346


>gi|256820979|ref|YP_003142258.1| hypothetical protein Coch_2153 [Capnocytophaga ochracea DSM 7271]
 gi|256582562|gb|ACU93697.1| protein of unknown function UPF0118 [Capnocytophaga ochracea DSM
           7271]
          Length = 358

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/352 (14%), Positives = 119/352 (33%), Gaps = 24/352 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           + +   +++ + L +LY L+     ++ +L++     P+   F  K +    T   V+  
Sbjct: 12  RAVGIIVLVVLGLYTLYLLQSIIIYLIVSLVLTLMGKPLIQFFYKKLKIKNRTLCVVLTM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + L +          + + K L S  +   +  +      +    G+   +      
Sbjct: 72  LLFVILSLGVFSLFIPLLISQGKNLSSLNIDLLKDNLDALLHQTLSKVGLQREDYSFGVQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +               IP F + F      + +    ++   FFF +DG  I   
Sbjct: 132 EMLNFID--------------IPNFLNSFISFISSFGVGFFSVLFITFFFMKDGDRILIA 177

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S+         K     +  ++   F+G+ +      ++      + GV +   + ++
Sbjct: 178 LLSIFSPKRKRKLKTSIFKINNLLSRYFVGLMLQLTILFIIYTIVLLIFGVENAFIIALL 237

Query: 248 TAIMAMIPGGAPISFTAVSIYL---------LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            A++ +IP   P+    +   L          +  ++     + +   I  FI +   +P
Sbjct: 238 CALLNLIPYIGPMIGFILMALLTMSSNLQNDFMTVSLPTTIYVLIGFIIGQFIDNFFSQP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +    +K   L  F   +      G+ G+ +      ++ V+ KE     K
Sbjct: 298 LIFSNSVKSTALEIFLITLISGTLFGITGMVVAIPAYTVLKVVLKEFFPNNK 349


>gi|198243580|ref|YP_002217541.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938096|gb|ACH75429.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 349

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 108/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++   G    +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVIILAGIHAAAGIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E ++ +   ++        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLAASFNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L  +   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMDIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLLVHMVIGNIMEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|322833666|ref|YP_004213693.1| hypothetical protein Rahaq_2972 [Rahnella sp. Y9602]
 gi|321168867|gb|ADW74566.1| protein of unknown function UPF0118 [Rahnella sp. Y9602]
          Length = 347

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 105/347 (30%), Gaps = 25/347 (7%)

Query: 1   MRETMLNPQGIMRWMI---MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+T++  QG+   ++   + +I   +        P + AL + F   P+       +  
Sbjct: 1   MRKTIVTTQGLKIVVMMAMLVVIFAGIKSAADIIVPFILALFLAFVLNPLIVLLEKWRVP 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                  +A + V  L I  ++FL    ++ + E    +       +     +       
Sbjct: 61  R-----ALAVLLVATLVICMMVFLTTKLLVTLNEFARTLPQYRGLIVDKLSDIEAWFPQS 115

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             +    +  S+      L+      + +           M      L +  +   +   
Sbjct: 116 ELTLSPEQLASYIDPAATLNMVSKLISYLSNAMAGLFLLLMTVAFMLLEVPQLPYKVEQM 175

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D       +    + +                    +  T+I++  GL + +   +  
Sbjct: 176 SEDPGKGMANIQRALDSVTR----------------YLVIKTLISVVTGLAVWALLAVTS 219

Query: 238 VPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           +      G++   +  IP     I+     I   +         L     +   I    +
Sbjct: 220 IRFAFLWGMLAFALNYIPNIGSFIAAIPPIIQAFLFNGFSEGLILAGGYILINLIFGSII 279

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            P ++G  + L  L  F  L+     MG +G+ +   L  ++ +  +
Sbjct: 280 DPKILGRGLGLSTLVVFMSLIFWGWLMGPVGMLLSVPLTIVLKIALE 326


>gi|205354800|ref|YP_002228601.1| hypothetical protein SG3855 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858820|ref|YP_002245471.1| hypothetical protein SEN3405 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205274581|emb|CAR39631.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206710623|emb|CAR34981.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326629944|gb|EGE36287.1| Putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 349

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++   G    +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVIILAGIHAAAGIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 128 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L  +   +  GV+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMDIQFALMWGVLAF 231

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 232 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLLVHMVIGNIMEPRMMGHRLGMS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 292 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 323


>gi|55380329|ref|YP_138178.1| hypothetical protein rrnB0307 [Haloarcula marismortui ATCC 43049]
 gi|55233054|gb|AAV48472.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 318

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 58/319 (18%), Positives = 115/319 (36%), Gaps = 18/319 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            ++ F   +L A+++ +  +P+     +    S    A+      +  F+ P++ +    
Sbjct: 2   LIRPFLQYILGAVLLAYVLYPLQIRLETY--VSPMLAALSLVTLAVTGFVAPVVVVLASI 59

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           M              +    + R     P  +   E   K L+  +            + 
Sbjct: 60  M--------------ESADRILREFGTDPVQLDILESRIKGLTGVEVDIAGELVSSGRDI 105

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              I   +++       + + I   +  +++  +DG  +   L            +    
Sbjct: 106 GTIIVERSTQAFSTITFHLIGIALALFLIYYLLKDGDDLVDWLHRTVPLPV-DVQRDFYA 164

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTA 264
            +  V+     G   +AI +G+V G      GVP+ +    +  ++AM+P    I  +  
Sbjct: 165 EIDDVMLGVLFGHVFVAIVQGIVAGVGLAATGVPNAMFWTAVMVVLAMVPLIGTIPVWGG 224

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             IYL        A  LFL+  I + + D  LRPF V    KL       G++GG    G
Sbjct: 225 AVIYLYATDEPLLAVGLFLYSVIIVGLTDDYLRPFAVDRYAKLNPAVILLGILGGAYAFG 284

Query: 325 LLGLFIGPVLMALIAVIWK 343
           ++GL  GPV++  +    +
Sbjct: 285 VMGLLFGPVVLGALKAALR 303


>gi|238795949|ref|ZP_04639461.1| AI-2 transport protein tqsA [Yersinia mollaretii ATCC 43969]
 gi|238720154|gb|EEQ11958.1| AI-2 transport protein tqsA [Yersinia mollaretii ATCC 43969]
          Length = 332

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 102/339 (30%), Gaps = 22/339 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
              ++ +I+  +        P L A+ +     P+      K +   T   V+    ++ 
Sbjct: 1   MLAMLVVIMAGIKAASPIVVPFLLAIFLSIVLNPLVKLLE-KIKIPRTLAIVLLVTLIIL 59

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  +    L        + L     +  +    +  +           ++          
Sbjct: 60  LMALLFSRLGVSLNEFARSLPQYRGMMLEKMRDLQEFAMRFNIEFSVDDIMKHVDP---- 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                              F +R          S   +++ + F   +   +  ++  + 
Sbjct: 116 --------------STAVNFVTRLLSHLSGAMASTFLLLMTVVFMLFEVERLPYKMQLMF 161

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           ++  P     I +     +    +  TII+I  G+V+       GV      G++  ++ 
Sbjct: 162 DN--PEQGNAILKRALNGVTHYLVIKTIISIATGIVIWLFLAAMGVRFAFLWGLLAFVLN 219

Query: 253 MIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            IP    +      I   L+     +A  +     +   I    + P ++G  + L  L 
Sbjct: 220 YIPNIGSVLAAIPPIIQALLFNGFADAFAVTGGYILINLIGGNIIDPRMMGRGLGLSTLV 279

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            F  L+     +G +G+ +   L  +  +  + +    K
Sbjct: 280 VFLSLIFWGWLLGPIGMLLSVPLTIIAKIALELTPAGYK 318


>gi|163794619|ref|ZP_02188589.1| hypothetical protein BAL199_26706 [alpha proteobacterium BAL199]
 gi|159179892|gb|EDP64417.1| hypothetical protein BAL199_26706 [alpha proteobacterium BAL199]
          Length = 362

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/353 (14%), Positives = 113/353 (32%), Gaps = 12/353 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + + + +    +    + I + +L   +    P++ A ++     P     + +    ++
Sbjct: 12  LEDRLPSLSFAVWGAAICIFVAALRLAQDVVIPIVGAAVMAVVLTPFARFLMRRFMFPTS 71

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A  A +    + +  L           ++  S V         +   +  +       
Sbjct: 72  LAAFAAFILAFVVILSLLFVAVPTVQRLSEDFPSLVYRVEYKLRSIALSMEAVKRWSETV 131

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E             +L                  +           I+FM++ +FFF RD
Sbjct: 132 EGLISLGQKSDGNHVLVREG---------GGAVGQLISSTPKVIAQIVFMLVLVFFFVRD 182

Query: 181 GFSISQQLDSLGE-HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              + + +  L           ++ R+V     S  L + +I +  G    +A+++AG+P
Sbjct: 183 RRVLQRVIIRLAPTPQTRFKAARVCRVVQNKAASYLLSVCVINLVLGAATATAFFIAGMP 242

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             +A G   A++  +P   P+    VS    L+I  +I  A            I      
Sbjct: 243 EPLAWGAAMAVLNFVPFIGPLILQIVSFLAGLVIYPSIEAALIPPAVLIALNLIESNFGM 302

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           P ++     +  L T   +  G    G  G  +   L+ ++     E  +  +
Sbjct: 303 PLVMEKRFLMSPLATLVAIACGAWMWGTPGAVLAVPLVVMVTTGSSEWRLGRR 355


>gi|293376194|ref|ZP_06622439.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325838909|ref|ZP_08166715.1| putative membrane protein [Turicibacter sp. HGF1]
 gi|292645181|gb|EFF63246.1| putative membrane protein [Turicibacter sanguinis PC909]
 gi|325490650|gb|EGC92961.1| putative membrane protein [Turicibacter sp. HGF1]
          Length = 370

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 112/299 (37%), Gaps = 7/299 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             +P + A+ + +   P+   F  +     ++  ++  VS++      +  L  Y ++ +
Sbjct: 46  IISPFIIAISLAYLLNPLVDFFC-RLHFKRSYAILVTFVSIVGGLFYAIFSLIPYLIVNI 104

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +E+++ + +  +    +   L+     ++  +  +    +           L ++ +   
Sbjct: 105 QEVLNSMPMLIEKVELLISNLNLDYIDIYKFDFSSLFSEN------SKFFTLFSSFLSRA 158

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             + S     F      +  + I L++   + + +  ++ +         +  I +   +
Sbjct: 159 GSWLSSASSSFTMIIGMLFLVPILLYYILNNFYELRNRIKNYLITHRHIQFFNILKESEE 218

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           V+R    G   +++   ++    + L G+ + V  GV+   + +IP    I  T  +   
Sbjct: 219 VVRGYVSGTLAVSLALSIIASIYFALIGLDNAVVFGVLIGFLNIIPYVGQIIGTIPAALF 278

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            +  +I+    + +      FI    ++P +    +    +     ++ G +  G++G+
Sbjct: 279 GLTVSIWTPVYVIIGVLALNFIEGNFIKPLVFSKAVDFHPIILLTLIIIGGQIFGVIGM 337


>gi|291166109|gb|EFE28155.1| hypothetical protein HMPREF0389_00068 [Filifactor alocis ATCC
           35896]
          Length = 400

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 99/347 (28%), Gaps = 16/347 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFIS-----------KKEESSTFLAVIATVSVMC 72
           +        P +  ++I +  +                    ++           +    
Sbjct: 41  IRLFLNTMNPFIYGMVIAYLMFRPVCFIERQLFRLFKRNEKYRQLCRNLSIFFVFLMTFG 100

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW-----TKHL 127
             I          +  +  L  K+    +      + +      +   + +     +++ 
Sbjct: 101 FLIFIGNVFIPQLVESLTVLTEKIPEYIKQFETFWKNVVQNQKILHQLKSFGFTNISQYK 160

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                             I  +   +  F    ++  + II  I  L           + 
Sbjct: 161 VDFWENLNQKTIKFFQFLIPSVISISGSFTGKIVNILMGIIVSIYLLSGKEVFEAQSKKV 220

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +  +       +I  +  +  ++   G    A+  G++      +  +P    +  +
Sbjct: 221 LYGIFPNKVVNNILQIIALTNETFQNYIGGQITDAVVLGIITFICMLILRLPMAFMISFL 280

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  +IP    I    + I+L++  +   A    +   +   +    L P +VG    L
Sbjct: 281 VMVCNVIPMIGSILSGIIGIFLILVISPSQAIVFAILILVLQQVDGNILLPRIVGDSTGL 340

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                F  +  G    GL  + +   +MA++  + KE +     +K+
Sbjct: 341 SGFWVFLAIFLGGVIGGLPAMVVSVPVMAVVYTLVKEQVEQRLRSKQ 387


>gi|154491658|ref|ZP_02031284.1| hypothetical protein PARMER_01269 [Parabacteroides merdae ATCC
           43184]
 gi|154087899|gb|EDN86944.1| hypothetical protein PARMER_01269 [Parabacteroides merdae ATCC
           43184]
          Length = 341

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 60/345 (17%), Positives = 137/345 (39%), Gaps = 20/345 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+ +  +       F   +L A  I             KK    +F+AVI  +
Sbjct: 14  KYSLVTIIVVLGTILFVEFIPFLGGILGACTIYILVRKQMLYLTEKKHLRRSFVAVILLL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  F++PL    +  + +++                    +  P  +  S     +L 
Sbjct: 74  ETILCFLIPLSLAVWLFINKLQNF------------------NLDPTQLVKSAEHIANLI 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++   + +T    + +  +P+           + +++  +++ L+F    G  + + +
Sbjct: 116 EQRTGYDVLDTSNIMSAVSILPKIGQVLMGGISGFAINVAVLVLILYFMLIGGAKMEKYV 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+         K +   +  ++ S  +G+ ++AI +GL+    YW+  VPS    G +T
Sbjct: 176 YSILPFS-DENKKNVLNEINMIVTSNAIGIPLLAIIQGLIALLGYWIFDVPSPFLFGFLT 234

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  +++Y+ + G+  NA  L  +  I +  VD  +R  L       
Sbjct: 235 CFATIIPVVGTALVWLPLALYMTLTGDWVNAAGLTAYALIIITNVDNLIRFILQKKMADT 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L T FG++ G+   G +G+  GP+L+++  + +        +N
Sbjct: 295 HPLITIFGVIIGLSLFGFMGIIFGPLLISIFILCFNIFKEKYLDN 339


>gi|15613026|ref|NP_241329.1| hypothetical protein BH0463 [Bacillus halodurans C-125]
 gi|10173076|dbj|BAB04182.1| BH0463 [Bacillus halodurans C-125]
          Length = 372

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 97/333 (29%), Gaps = 10/333 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L  + ++  +++   L +LYF      P L A ++ F   PI ++             +
Sbjct: 7   LLIARLLIVALLIATGLYALYFFLSLTYPFLIAALLAFFMNPIVNTLEKDIRLPRPLAVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG----------IPVPRWLSDIP 114
           ++ + +  L    +  +    +   + L   V    +              +P W   + 
Sbjct: 67  VSLLLLFGLIGGLVTIMIVKMIDGFRYLSLMVPTQIERISMTIQNYVNEQILPLWNQGLG 126

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                     + L             L  N    I    S            ++F+I+ L
Sbjct: 127 LIDRLEPSQQRALEEGIQQLGGQLASLLGNLGQAIANGLSHIVSALPLTLTVVVFIILGL 186

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +F  +D         +    +       + + +   +        I+     L+      
Sbjct: 187 YFISKDWNKFKMAARTRLPFIVRRRTLDVIKDLKTKVFGFITAQVILISLTALINFIGLL 246

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  V     + +I  ++ ++P               I           L       ++ +
Sbjct: 247 VLQVEHPFTIALIIGLVDLLPYLGTGIILIPWGIYSIVTGNLFLGVGLLALYGLTVLIRQ 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              P ++   + L  L T   L  G++  G+LG
Sbjct: 307 LAEPKVLSSSLGLNPLATLISLFAGLQLFGVLG 339


>gi|149185995|ref|ZP_01864310.1| predicted permease [Erythrobacter sp. SD-21]
 gi|148830556|gb|EDL48992.1| predicted permease [Erythrobacter sp. SD-21]
          Length = 381

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/356 (12%), Positives = 90/356 (25%), Gaps = 27/356 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             + W ++  +L  +  +      +  A++ G                  +    I  V 
Sbjct: 42  RALVWGLVIGLLWLMVHISQSLLVIFGAMVFGCMVDGGSRLLAKALPIPRSLRVAIVLVL 101

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V   FI            +  +  + +       I   +                     
Sbjct: 102 VTAFFIWLGYLAGSQISQQAAQFPAIINEQLGRAIAFLQSKGFAIRTADIQSF------- 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                           +       +R          +++ +II   +F  D     + + 
Sbjct: 155 -------------AASVASGVGTVTRAIGGIFGGLTTLVLIIIIGIYFAIDPRIYERGVA 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-------VPSHV 242
            +        +          +R    G  +    EG          G       VP   
Sbjct: 202 WMVPAKHRGAFYDTLSHQAYTLRRLMAGRLVGMAFEGFFTWVMLAFGGMLIGIDPVPMAA 261

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            LG++T ++A IP    I    + + +   G             +        L P +  
Sbjct: 262 LLGLLTGLLAFIPNIGAIISGVLMVLVGFSGGTDMGLYTIFVYFLVQNFDGYVLVPLIAK 321

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             + L         +      G+LGL +   L+A+I V  +      K   E +++
Sbjct: 322 KTVDLAPALVLSAQLIFGVLFGILGLALADPLLAMIKVALERRSALRKGEVEPVTA 377


>gi|83815970|ref|YP_445768.1| domain of unknown function, putative [Salinibacter ruber DSM 13855]
 gi|83757364|gb|ABC45477.1| Domain of unknown function, putative [Salinibacter ruber DSM 13855]
          Length = 352

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 31/322 (9%), Positives = 92/322 (28%), Gaps = 16/322 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L      V + +++      +                 +  + +  + +           
Sbjct: 34  LVEVLFTVFAGILLAVFLAGVTQELTEDTRLPRPLAVALTLIGLGGVLVGLWALAGPDIS 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +   L + +  A +      R      G M      ++ L                  +
Sbjct: 94  EQASALATLLPDAAERLASRIRTTVQRYGWMQRYVDPSQLLPP----------------V 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    +      L+  ++   ++    +      S    +  L         + +   
Sbjct: 138 SSVLGRVTNVFRDTLNLLVNGFIILFIGIYGGAAPQSYLDGVVQLVPPSSRPRARDVLSA 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + + +R    G  I+ +  G++      + G+PS +ALG++ A+ + +P   P+     +
Sbjct: 198 LGRALRWWLTGRLILMLIVGVLTAVGLKVVGIPSPIALGLLAALFSFVPYLGPVLSVLPA 257

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + +           + L       +    + P +    + +P          G  + G  
Sbjct: 258 LLVASLIGPTEVLYVILVYGAVQLLESYLISPLVQQQAVHIPPATVITAQFIGGVSAGAG 317

Query: 327 GLFIGPVLMALIAVIWKESIMA 348
           G+ +      ++ V+ +   + 
Sbjct: 318 GVLLATPFAIVVIVLVQTLYVE 339


>gi|256028129|ref|ZP_05441963.1| permease [Fusobacterium sp. D11]
          Length = 363

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 120/327 (36%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KG+F  ++ A+ I     PI      K + +      ++ V V+ + ++  L +    + 
Sbjct: 37  KGYFMTLIMAIFIAILLEPIKKYLKKKSKINDVLAISLSIVFVVLIVVIISLIVIPEIIS 96

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  + + + +++         + TK L    +  I + T      + 
Sbjct: 97  SLKVLNDIYPAISEKVLTIGKDVTNYLAEKNIYTVDTKELDDYFTKFISNNTSNIKEFVL 156

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                   + + F +  ++     + L        ++   +  +       Y     ++ 
Sbjct: 157 AFIGGLVNWTLGFTNLIVAFTLAFLILLDKKNLMKTLENLIIIIFGVKNTPYVMNKLKLS 216

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             +  S   G  I++   GL +     + G P      ++  +  MIP    I    V+ 
Sbjct: 217 KDIFISYISGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSILGGIVAF 276

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +  AI   +    + P ++G  + L        ++      GL+G
Sbjct: 277 FLILLVAPIKTLILLIAIAIAQLVDGFIVGPKIIGDKVGLSTFWVMVSMIIFGNLFGLVG 336

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKE 354
           +F+G  ++++I + + + + A +  ++
Sbjct: 337 MFLGTPILSIIRLFYIDLLKAKQGGEQ 363


>gi|266619979|ref|ZP_06112914.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288868443|gb|EFD00742.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 362

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/330 (14%), Positives = 102/330 (30%), Gaps = 3/330 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           ++  +    L +     +P ++A +I +           K   +    A++  +      
Sbjct: 18  ILFLMAFTVLKYGLSMLSPFVAAFLIAWVLKGPIGFVSGKLRLNWKPAAILVVLLFYSTI 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  L    +   KEL + +     + +                 +    L+    L+
Sbjct: 78  GFLIFLLGVKALSAAKELTANLPGIYAYYVEPALISLFDSFEQSIFRVDNTLLAAFMELE 137

Query: 135 ILSETFLKTNGIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                                 S          + I+ MII+ FF   D   ++      
Sbjct: 138 TQFVQSAGQMVSGLSMDAMGHISGIASSLPGLFIEILLMIISTFFIALDYHRLTGFCLMQ 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +      + +I   V   +        +I     + L     + GV + V +  + A+ 
Sbjct: 198 LDGKAKDVFFQIKEYVVGTLLVCIRSYALIMTITFVELAVGLSVIGVKNSVLIAFLIALF 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P             L      +      L   + + +V   L P +VG  I +  + 
Sbjct: 258 DILPVLGTGGIMIPWTILTALQGDYPLALGLLLVYLFVTVVRNILEPKIVGSQIGVHPVV 317

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           T  G+  G +  G+LGLF  P+ ++L+  +
Sbjct: 318 TLAGMFVGAQLFGVLGLFGFPIGISLLRHL 347


>gi|227533850|ref|ZP_03963899.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
 gi|227188486|gb|EEI68553.1| permease [Lactobacillus paracasei subsp. paracasei ATCC 25302]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 104/341 (30%), Gaps = 17/341 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +           +
Sbjct: 15  EKFINNLPVRRTVVLFSVFLLLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHIRPFVI 74

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V   + V+   +   +      + +   L + V             +            
Sbjct: 75  VVPVYILVILGLVYAAVHYVPAIIHQTIGLFNSVQNFYNSEAFANNQVMQWVL------- 127

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   QS K L+ T     G+  + ++A   G + L   +S I              
Sbjct: 128 --------QSTKSLNLTEQLKTGVTTVLQYAGNIGAMGLTLFVSFILSFFFTIELDSLPA 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                LDS     F       +                IA+   ++         +P+  
Sbjct: 180 FGQLFLDSPFGWYFKDLQ-YFAMKFINTFGVVMEAQIFIAVVNTVITTITLLFLKMPNTP 238

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++++IP    I     ++I     G   +   + +  A    +    L P  +
Sbjct: 239 SLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVLTILIMIAAIHVLEAYVLNPKFM 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 299 SSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 339


>gi|218440715|ref|YP_002379044.1| hypothetical protein PCC7424_3795 [Cyanothece sp. PCC 7424]
 gi|218173443|gb|ACK72176.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 350

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/344 (15%), Positives = 123/344 (35%), Gaps = 13/344 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  +++++ +  L+   +  ++A ++ F           +   S  +   +  +  +
Sbjct: 20  LAFLNGWLLVLLINSLEPLVSIFVTATLLAFLIDFPIRLLEQR-GISRLWAVTLVFLMAL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +  L L    + ++ EL+S +    + G     +L              ++L    
Sbjct: 79  VILAILSLILVPLIVQQLSELISVLPQWIETGSQNLEYLRQWAIA--------QNLPINL 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +  I       TN    +      F +  +    +IIF+++   F    G ++ + L S 
Sbjct: 131 NETITQMAERLTNIFQSLSSQVLNFILSTIGSIFNIIFVLVLTVFLVFTGENLWEGLFSW 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  + K +  ++ +     F    I+A    L     + +  VP  V  GV   + 
Sbjct: 191 LPV---PWNKDLRNLIREKFEKYFASQAILAGILSLSQTLIFTVLNVPYSVLFGVTIGLT 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP  + ++   +   +L   N      + +   I   I D+ + P L+GG   L  + 
Sbjct: 248 TLIPYASALTIL-LISIILSLENWVLGLKVLIAAIIIGQINDQVIAPRLMGGLTGLNPVW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               L  G ++ G+LGL I     ++I  +            + 
Sbjct: 307 LIIALFIGGKSAGILGLLIAVPFASVIKNVADILKSKYINQPQN 350


>gi|148821398|ref|YP_001286152.1| transmembrane protein [Mycobacterium tuberculosis F11]
 gi|148719925|gb|ABR04550.1| conserved transmembrane protein [Mycobacterium tuberculosis F11]
          Length = 367

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 97/331 (29%), Gaps = 14/331 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    M  +L  L   +    PVL  L++     P      S+          +  +
Sbjct: 23  RFLVILAAMVALLWVLNKFEVIVVPVLLVLMLSALLVPPVDWLDSR-GLPHAVAVTLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    L F+    +  +  LV++V  +                  W  E       
Sbjct: 82  SGFAVLGGILTFVVSQFIAGLPHLVTEVERSIDSARR------------WLIEGPAHLRG 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N    +   A        +   + + ++  L FF   G SI Q +
Sbjct: 130 EQIDNAGNAAIEALRNNQAKLTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +   R     +        ++A+ +   +G+   + GVP  + L  + 
Sbjct: 190 TKAFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLV 249

Query: 249 AIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A IP    +       +  L+   I  A            +    L+P ++G  + +
Sbjct: 250 FFGAFIPLIGAVVAGFLAVVVALLAKGIGYALITVGLLIAVNQLEAHLLQPLVMGRAVSI 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L     +  G    G++G  +    +A  
Sbjct: 310 HPLAVVLAIAAGGVLAGVVGALLAVPTVAFF 340


>gi|198276942|ref|ZP_03209473.1| hypothetical protein BACPLE_03147 [Bacteroides plebeius DSM 17135]
 gi|198270467|gb|EDY94737.1| hypothetical protein BACPLE_03147 [Bacteroides plebeius DSM 17135]
          Length = 338

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 122/325 (37%), Gaps = 22/325 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +   I+ +  +     + F   +L    +      +     +K +        + T+
Sbjct: 7   KYSLIVFILGLGYLLFRQAQPFLNGILGGFTLYLLLRNVTFWLQTKMK--PALAVWLVTI 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    ++PL    +  + ++ ++        +    V  ++ D  G    SE       
Sbjct: 65  GVTLFILIPLSLFGWALVSQVSKMHFDTEAIIRPAWHVIDFIKDRTGFDILSE------- 117

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +  +               D  +++   I+ LFF   +G S+   +
Sbjct: 118 -----------KSLSFFVSQASSIGQSVMSGVSDLLVNLCVAIMLLFFMLYEGKSMEHYV 166

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L          ++ + V  ++RS  +G+ ++AI +G +    Y +   P+     ++T
Sbjct: 167 STLLPFKA-ENKIEVLKKVQLMVRSNAIGIPLLAIIQGFISLGGYLICDAPNPFLSAMLT 225

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           A  ++IP     + +  ++IY LI G+  NA  +  +GAI +   D  +R  L      +
Sbjct: 226 AFASVIPLVGTALVWVPITIYFLIVGSWVNALMMLGYGAIIVSQCDNLIRFLLQKKMADV 285

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGP 332
             L T FG+V G+   G +G+  GP
Sbjct: 286 HPLITIFGVVAGLPLFGFMGVIFGP 310


>gi|194323489|ref|ZP_03057266.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|194322344|gb|EDX19825.1| domain protein of unknown function, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 341

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 122/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 70  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 130 KDIIISNLGKILPTIRYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLKDF-- 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 188 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|71275710|ref|ZP_00651995.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71897834|ref|ZP_00680060.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|170729470|ref|YP_001774903.1| transport protein [Xylella fastidiosa M12]
 gi|71163601|gb|EAO13318.1| Protein of unknown function UPF0118 [Xylella fastidiosa Dixon]
 gi|71732389|gb|EAO34443.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|167964263|gb|ACA11273.1| transport protein [Xylella fastidiosa M12]
          Length = 369

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 107/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI  +    +   +    ++  + + 
Sbjct: 32  LVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALLLLCLGIS 91

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++ +                      Q      R ++     +              
Sbjct: 92  GTVVLSVELAGP------------ASEWIQQAPDKIRQVARQVRHLTRPMQQANQAVESL 139

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +     ET  ++  +           M      +S++ +I+  FFF   G  + ++  +L
Sbjct: 140 ARAADGETERQSQTVRTRLYNPYTLLMDTHKLVISVLGVILLTFFFMVFGEKLQRKAIAL 199

Query: 192 GEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
             +     +   I R +   I    L +++I    GL+      L  +     +  G + 
Sbjct: 200 LPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSVLLLLLSIPLQEALLWGTVV 259

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + +   L+       A    L   +   +  + + P ++G  + 
Sbjct: 260 ALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPIILGHRMA 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      GL+GL +   ++  I ++ 
Sbjct: 320 ISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMVL 355


>gi|254360569|ref|ZP_04976718.1| possible membrane protein [Mannheimia haemolytica PHL213]
 gi|153091109|gb|EDN73114.1| possible membrane protein [Mannheimia haemolytica PHL213]
          Length = 350

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 99/316 (31%), Gaps = 19/316 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              P L +L I     P+      +K         +A   ++ +FI+   FL       +
Sbjct: 27  IVVPFLLSLFIAIICSPMIKFMTKRKVP-----LWLAITILLIVFILGFSFLAGIINNTL 81

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +E  + +           + + ++                   L +  E  +       I
Sbjct: 82  QEFTNAIPQYKIQLSSRIQVILEL------------AHRWHIPLTLSQEEIMSKFDPSSI 129

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-DSLGEHLFPAYWKKISRIVP 208
               S+  M       +I  + + + F   +      +L  +L      +  K+    V 
Sbjct: 130 MNLVSKLLMGLSGALSNIFVIFLVVIFMLLEMPVAKYKLALALSPDDDLSNEKEYINQVL 189

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +       T +++  G ++     + GV   +   ++T ++  +P    I      + 
Sbjct: 190 EGVIGYLGVKTFVSLLTGGLVWILLEILGVEYAILWAILTFLLNYVPNIGSILAGIPIVI 249

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L+           +   +   +V   L P L+G  + L  L  F  L+     +G +G
Sbjct: 250 QALVLNGFSIGLGTLIGIVVINMVVGNALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVG 309

Query: 328 LFIGPVLMALIAVIWK 343
           + +   L     V  +
Sbjct: 310 MLLSVPLTMACKVALE 325


>gi|21233325|ref|NP_639242.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66770287|ref|YP_245049.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21115157|gb|AAM43124.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66575619|gb|AAY51029.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 368

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 106/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PV+ A        PI      K        A++     +
Sbjct: 31  LVVLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGL-RKLYIPRFLGALMILCLGL 89

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     L       +++   ++    +      + +                     
Sbjct: 90  AGTVALAAQLAGPAAEWVQQAPRQMRQIARDVRDFTKPVQQANQAAENFARAAGGEGARG 149

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 150 IQIVRTQLDDPYKSLTRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 198

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I +  GLV     ++  +P    +  G + 
Sbjct: 199 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINMLVGLVFAGILYVLKIPLPEALLWGTVV 258

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 259 ALLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 319 ISPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 354


>gi|313899169|ref|ZP_07832690.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312956038|gb|EFR37685.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 365

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/322 (10%), Positives = 96/322 (29%), Gaps = 25/322 (7%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PVL  ++I F   P+          S     ++  + +  +  V ++ +      ++ +
Sbjct: 48  LPVLMGIVIAFLLQPLIDRLQQH--VSQKLAVMLVYIGIALVLAVFVIGMIPIIYKQVMD 105

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
               V +  +H                              + I +   LK   +     
Sbjct: 106 FAEVVPVWMRHLEGFLDRYH---------------------IAIGNLETLKEKYLQEGYI 144

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                    +    +     I  FF   D     +    +  +L    +      +  ++
Sbjct: 145 IVIDSLRNTMHTATNYGIAYITAFFISIDLDFWKRTAKKVIPNLHQ--FSTFYLTMSNIV 202

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               +G  +  +   + +G   ++   P+ +   VI A++ + P         +   +  
Sbjct: 203 YQYLVGTFLDILFIVVTVGITLYIFAFPNALLYAVILALLNLFPYVGATFGLILIAIVGA 262

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                     F        I    ++P +    + +  + TF  +       G++G+ + 
Sbjct: 263 LSYPVFPFLAFAIVWTIQQIESNFIQPMIFNRTMHVRPILTFVFIFLSEALFGVVGVILS 322

Query: 332 PVLMALIAVIWKESIMAIKENK 353
           P+  A+  + ++  + +   +K
Sbjct: 323 PIFAAIAQIAFRSWLHSKTSDK 344


>gi|134302427|ref|YP_001122397.1| hypothetical protein FTW_1565 [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134050204|gb|ABO47275.1| hypothetical membrane protein [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 341

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 129/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  + +  I       G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 130 KD----MIISNLGKILPTIRYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      IS  +    R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 186 DFHDSDSFISAAI-ATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|89256840|ref|YP_514202.1| hypothetical protein FTL_1556 [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009266|ref|ZP_02274197.1| hypothetical protein Ftulh_00695 [Francisella tularensis subsp.
           holarctica FSC200]
 gi|89144671|emb|CAJ79995.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. holarctica LVS]
          Length = 341

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 130/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  + +  I       G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 130 KD----MIISNLGKILPTIRYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 185

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      IS  +    R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 186 DFHDSDSFISAAI-ATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +   +  A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGVTKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|296533359|ref|ZP_06895959.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
 gi|296266314|gb|EFH12339.1| protein of hypothetical function UPF0118 [Roseomonas cervicalis
           ATCC 49957]
          Length = 642

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/350 (13%), Positives = 101/350 (28%), Gaps = 13/350 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            + + +       +++  LY  +    PV  A+++     P+       +   +T + + 
Sbjct: 23  PDLRSLTTLAGGVVVIAGLYLGRDVLIPVTLAILLSLVLSPLVRLLRRLRIGRATAVLLA 82

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V++  +  +    L    + E+ +         Q  +   R ++    G     L   
Sbjct: 83  VLVALGII--LAAAALIGAQLAELAQNAPLYQHTIQQKLDTLRQMTIGRVGAMVERLGAD 140

Query: 126 HLSHPQSLKILSETFLKTNGIDFI---------PRFASRFGMIFLDYCLSIIFMIIALFF 176
               P ++  +      T     +          +    F             ++I   F
Sbjct: 141 FGRAPPAVPSIVPQGDATPPPLPVEIHDPDMTPMQMVRAFLAPLAGPLTQAGIVLIVTIF 200

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +L  L                   +   FL    I +G G ++G    + 
Sbjct: 201 VLLQREDLRDRLIRLFGSTDLHRTTIAMDDAAYRLSRFFLAQLCINLGFGAIIGLGLLVI 260

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDK 294
           GVPS +  G++ A++  +P    I    + I L          A            I   
Sbjct: 261 GVPSPLLWGLVAALLRFVPFIGGILGAVLPIGLAASVDPGWSMALWTAALFLAVEPIAAH 320

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + P   G    +  +      +      G +GL I   +   + V+ + 
Sbjct: 321 VVEPLTYGHSTGMSPVSVIIAAIFWSWIWGPIGLLIATPVTLCLVVLGRH 370


>gi|59714262|ref|YP_207037.1| inner membrane protein [Vibrio fischeri ES114]
 gi|59482510|gb|AAW88149.1| predicted inner membrane protein [Vibrio fischeri ES114]
          Length = 362

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 127/346 (36%), Gaps = 5/346 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            +  ++L     LK F   ++   II    +PI + F  K   S + +++I TV  + L 
Sbjct: 20  ALSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKTALSESKVSIILTVIGVLLL 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++PL+ L         EL       +         + D P     +  +    S      
Sbjct: 80  LIPLVALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPIIGHEAYSFMSLASSNLESL 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   +                 G  F+ + +S I   +    F  +     +    +   
Sbjct: 140 LFKYSAEVKVVAAKAASLVGSLGGGFIQFIVSTIIAGV----FMANAAKCERAFILITNR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM- 253
           L   + +++ ++    IRS   G+  +A+ +  + G    + G+ + V    +  ++   
Sbjct: 196 LTGKHGEELIKLSKITIRSVVQGVIGVAVIQATMAGLGMAVVGISASVLGLWVFLVLVFA 255

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           I    PI      I+ +   +   A  LF    + +   D  L+P L+     +P +   
Sbjct: 256 IIQLPPILILLPIIFYVFSVDTTTAGVLFAVWCVLVSSSDAILKPVLLSRGSHIPIIVIL 315

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            G +GG+   G++GLF+G V+++L   ++   +    E  +    N
Sbjct: 316 LGALGGMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKDN 361


>gi|172057436|ref|YP_001813896.1| hypothetical protein Exig_1411 [Exiguobacterium sibiricum 255-15]
 gi|171989957|gb|ACB60879.1| protein of unknown function UPF0118 [Exiguobacterium sibiricum
           255-15]
          Length = 290

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 74/260 (28%), Gaps = 3/260 (1%)

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           LF     ++   +  V    +    +      +      S     +        + S T 
Sbjct: 3   LFPLITKQLFAFIGAVPGFAE---RLYTQSLSLYAKYGTSIPTLDNQLSSVENSMKSATA 59

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           L  N    I                ++   +    F   DG  +   L       +    
Sbjct: 60  LLGNVFSSIAGSVIWLIQFIASTVFTLFIALFLYIFMLFDGKKLPNALVQFIPVGYRKEA 119

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             I + +   IRS      I+      +     W   VP  + LG+      +IP   P 
Sbjct: 120 LLILKDMNGTIRSYVRAQLIVCSFVWSLATLVLWWLDVPYFLPLGLFIFATNIIPYLGPF 179

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A ++ +           + +   I   +    + P + G  +K+  +     L+   
Sbjct: 180 LGAAPAVLIGFLDEPIKGLYVIIGITIVQQLDANVISPLVQGKSLKVHPITITVVLLVAG 239

Query: 321 RTMGLLGLFIGPVLMALIAV 340
           +  G+LG+ +     AL  V
Sbjct: 240 QLAGILGMLLAVPFYALAKV 259


>gi|254524493|ref|ZP_05136548.1| transport protein [Stenotrophomonas sp. SKA14]
 gi|219722084|gb|EED40609.1| transport protein [Stenotrophomonas sp. SKA14]
          Length = 340

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/336 (14%), Positives = 111/336 (33%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI      K        A++   + +
Sbjct: 3   LVVLATLAVGYTLWAAQDIILPVLLAMFFALVGNPILRLLQ-KLWIPRALGALLVLGAGL 61

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +     + L    M   +E   ++    +    + + +                 S+ +
Sbjct: 62  GVTGALAVQLIGPAMEWAQEAPQQLRKVARQVQDLTKPVQQANQAAENFARVAGGDSNRK 121

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I ++       +   PR A+    + L              FF   G ++ +   +L
Sbjct: 122 VQVIRTQLDDPYRMLTRAPRLAASVLAVVLLTL-----------FFMIYGQNLQRAAIAL 170

Query: 192 GEHLFPAYW-KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
             +     +   I R + + +    L +++I    GLV      L G+     +  G + 
Sbjct: 171 FPNRQQQRFTSDILRSIEREVSRYVLTISVINTLVGLVFAGVLMLFGISLQDALLWGTVA 230

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+   A+ + +  +   +   A            +  + + P ++G  +K
Sbjct: 231 ALLNFAPYVGPLIGVALMLLMGFVEFSDPLQALLPAAAYLALHTVEGQVVTPIVLGRRMK 290

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L     L+      G++GL +   L+  I ++ 
Sbjct: 291 LSPLVLILALMVFGWAWGMIGLLLAVPLLVCIKLVL 326


>gi|325570443|ref|ZP_08146220.1| permease [Enterococcus casseliflavus ATCC 12755]
 gi|325156653|gb|EGC68830.1| permease [Enterococcus casseliflavus ATCC 12755]
          Length = 366

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 115/338 (34%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F+  +        F PVL ++ I +   P ++    + +   +       + ++    
Sbjct: 29  ILFVFRLLEAIFSSVFLPVLISIFIFYIFLPFFNWVKKRTK-KKSIALYSTLLLIVFAAY 87

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      EM   ++++ +     I               S L         S+ I
Sbjct: 88  LIVQVIGPALAYEMGRFINQIPIIINLVIDTIDH----------SYLEELFGPFIDSIDI 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +      I       +    I     + +  + + L + ++DG  +   L S     
Sbjct: 138 SQASNFALQFITGATNSLTSLISIVSHSAIVLFTIPLLLVYMFKDGEKVPDFLASKTPKN 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    +++     +   +   G  ++     +     + L G+ + + LG+I  ++ +IP
Sbjct: 198 YQGLMRQLCSDFHQAASAYIGGKLLVCSYVAVSSYFIFSLLGLQNALLLGLICGVLDIIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A +    +  +I  A  L +   I        + P ++   + +  +   F 
Sbjct: 258 YFGPFIGAAPAFLFALSQDIRTAIFLIVGITIIQLGESYLVSPLVMKKVLHIHPIIAVFL 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+     +G +G+ +   + +++  +    +   +E K
Sbjct: 318 LLIAGNLLGFVGMIVALPVYSIVMAMSGTLLRFFQERK 355


>gi|189468029|ref|ZP_03016814.1| hypothetical protein BACINT_04423 [Bacteroides intestinalis DSM
           17393]
 gi|189436293|gb|EDV05278.1| hypothetical protein BACINT_04423 [Bacteroides intestinalis DSM
           17393]
          Length = 346

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 129/329 (39%), Gaps = 20/329 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K+    +  A + T   +  F+VPL    +  +
Sbjct: 37  ITPFLGGLLGALTIYILVRKQMIHLTDKRNMKRSIAATLITTEAILFFLVPLALAVWLLV 96

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++++                  +  P  + A      ++   ++   +      +  I
Sbjct: 97  SKLQDI------------------NLDPESIIAPIEDMANIIKDRTGYDVLGKDTTSFII 138

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +P            + +++  ++  L+F    G  + Q +  +      +    + R 
Sbjct: 139 SALPAIGQFVMGSISSFAVNLFVLVFVLYFMLIGGQKMEQYISDILP-FNKSNTDHVVRE 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAV 265
           +  ++ S  +G+ ++AI +G V    YW   VP  +  G +T +  +IP     + +  +
Sbjct: 198 IKMIVHSNAVGIPLLAIIQGGVAMIGYWFFDVPDILLTGFLTCLATVIPMVGTALVWFPI 257

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++Y+ + G++FN   L ++G + +  +D  +R  L      +  L T FG+V G+   G 
Sbjct: 258 AVYMALSGDLFNGIGLAIFGTLIISQLDNLIRFILQKRMADIHPLITIFGVVIGLSLFGF 317

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +G+  GP+L++L  +          +  +
Sbjct: 318 MGVIFGPLLLSLFFLFVDMFKREYLDKSK 346


>gi|188993486|ref|YP_001905496.1| Putative permease family protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167735246|emb|CAP53460.1| Putative permease family protein [Xanthomonas campestris pv.
           campestris]
          Length = 368

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 106/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PV+ A        PI      K        A++     +
Sbjct: 31  LVVLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGL-RKLYIPRFLGALMILCLGL 89

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     L       +++   ++    +      + +                     
Sbjct: 90  AGTVALAAQLAGPAAEWVQQAPRQMRQIARDVRDFTKPVQQANQAAENFARAAGGEGARG 149

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 150 IQIVRTQLDDPYKSLTRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 198

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I +  GLV     +L  +P    +  G + 
Sbjct: 199 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINMLVGLVFAGILYLLKIPLPEALLWGTVV 258

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 259 ALLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 319 ISPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 354


>gi|328675713|gb|AEB28388.1| conserved hypothetical protein [Francisella cf. novicida 3523]
          Length = 341

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 121/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + +  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFLIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +     L +  +  
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGTTLQEHFDKLLNMVNQD 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 130 KNMIISNLGKILPTIRYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLKDF-- 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 188 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGCIMTITFSMVGIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIVYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|295104648|emb|CBL02192.1| Predicted permease [Faecalibacterium prausnitzii SL3/3]
          Length = 373

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 62/372 (16%), Positives = 126/372 (33%), Gaps = 22/372 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFF----------APVLSALIIGFTSWPIYSSFISKK 55
              Q ++  ++   + V+L  L               P+L+  I+        +    + 
Sbjct: 4   KTKQSLLVTVVGVTLFVALLRLSDVLAFAAKLIDLVLPILAGGILALFINVPMTGLEKRL 63

Query: 56  E------ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                  +       I  +S     +  +L L     L + ELV                
Sbjct: 64  NRLFGKAKKQPSAKAIHLLSFFITLLGVVLVLVLALTLLIPELVQSFHSLYVQIEANIPR 123

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            +       A   W  +     + + L      T  ID +   A       ++  ++  F
Sbjct: 124 WTAYLNAQDADMGWLMNWLEGINWEQLLHK--VTASIDTVLVNAVGAVSATVNIAITASF 181

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWK----KISRIVPKVIRSTFLGMTIIAIGE 225
            +I   +      S+  Q  +L              K  R+  +   +   G    A+  
Sbjct: 182 ALIISVYMSLSTESLGHQARTLVCAYLKPAHAAGVLKFCRLFRQSFANFLTGQCSEAVIL 241

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
           G+++  A+ +  +P    +GV+TAI A+IP    +    VS++L++  +   A    +  
Sbjct: 242 GVLMALAFSVFKIPYGSLVGVLTAICAIIPYVGALISCVVSVFLVLLVDPVLAVRCLIVY 301

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               F+ ++ + P +VG  + L  L T    + G +  G++G+     L A++  + KE 
Sbjct: 302 LAVQFVENQFIYPRVVGKSVGLSPLYTLIAAMIGGKLFGIIGIIFFIPLTAVVIELVKED 361

Query: 346 IMAIKENKEKIS 357
                  KE + 
Sbjct: 362 TFRRLRAKEPLQ 373


>gi|261418248|ref|YP_003251930.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|297529102|ref|YP_003670377.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
 gi|319767792|ref|YP_004133293.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
 gi|261374705|gb|ACX77448.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC61]
 gi|297252354|gb|ADI25800.1| sporulation integral membrane protein YtvI [Geobacillus sp. C56-T3]
 gi|317112658|gb|ADU95150.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           Y412MC52]
          Length = 372

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/343 (11%), Positives = 101/343 (29%), Gaps = 10/343 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    + +  ++ Y++     P + A  I     P+  +   K +        +  +
Sbjct: 11  RFFLVIAAVALGAIAAYYIATVTYPFIIAFFIAMIINPLVDALERKAKMPRWLAVSVTLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +       +  L    +   + L   V    Q  I                +L     S
Sbjct: 71  MLFAAVAGLVTLLVAEIVSGTQYLARVVPEKFQALITYMETFVADQIIPIYKDLAGMFKS 130

Query: 129 HPQSLKILSETFLKTNG----------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              + +      ++  G          +  I +   +      +     IF ++A FF  
Sbjct: 131 LSATQQDTIMQNIQAVGKKIGTTVGEFVQSILQNIPQLLAWLPNAATVFIFSLLATFFIS 190

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D   + +              K +   + + +         +     +++     +  V
Sbjct: 191 KDWRRLVRMAQQWLPTKARTSGKTVFLDLKRALFGFIKAQATLISITTVIVLIGLLILRV 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + + +I   + ++P           I   +               + + +  + + P
Sbjct: 251 DYAITIALIIGFVDLLPYLGTGIVFVPWIIYTMASGDIPFAIGLGVLYVVVLVQRQIMEP 310

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++   I L  L T   L  G + +G LGL  GPV + +I  +
Sbjct: 311 KVLSSTIGLDPLATLIALFVGFKLLGFLGLIAGPVALVIIRTL 353


>gi|254418458|ref|ZP_05032182.1| conserved domain protein, putative [Brevundimonas sp. BAL3]
 gi|196184635|gb|EDX79611.1| conserved domain protein, putative [Brevundimonas sp. BAL3]
          Length = 389

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 95/328 (28%), Gaps = 21/328 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             ++Y+L+    P+  AL +      +  +  ++   +  +  V A V V+  F   +  
Sbjct: 39  GAAVYWLRDILTPLAMALFLLIMIDGVKRTVAARTPLNDRWAGVAALVLVVLAFFASIGI 98

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +             +    +Q+  P    +     GM               +       
Sbjct: 99  IV----NGAAGFFGEASGVSQNIGPRIDQIIRDVYGMARLNNPPTAQELINGVD------ 148

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAY 199
                   I  + +   +          F+++ L F         +++ ++         
Sbjct: 149 --------IRGYVASIAIQAQGIASGAFFVMVYLGFLLASQIGFRRKIVTMFPQKRQRDE 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              +   V   +       T+      +V        G+ +      +  I+  IP    
Sbjct: 201 AIAVFERVRGGVEGYIWVQTVTGAMICVVAWILMRAVGLQNAEFWTFVIFIVGFIPVLGG 260

Query: 260 ISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                      L+   + + A  L +     LFIV   ++P + G    +  +     L 
Sbjct: 261 AVAGLAPPLFALVQFPSYWPALILLVGLQTILFIVGNMIQPRMQGDNQNIDPVVVLLSLA 320

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKES 345
              +  G++G+F+   L  +   I  E 
Sbjct: 321 FWGKLWGVVGMFLSTPLAVMAMAILAEF 348


>gi|328886993|emb|CCA60232.1| integral membrane protein [Streptomyces venezuelae ATCC 10712]
          Length = 362

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 96/334 (28%), Gaps = 15/334 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  ++++ +   L         +   L+I     P+                 +  +
Sbjct: 22  RILIVGVLVYSLFAVLGRFHEIGVALFLGLVITALLRPLADLVAR--GLPRPIAVALTLL 79

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  L  +      E   LV +                             +   
Sbjct: 80  GSIALVLGVLALVGEAVAGERSTLVREFRDGIGRIEDWLER------------PPFRLDP 127

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         ++    +   A       +    ++   + +  FF   G       
Sbjct: 128 GALGGLQARIGEFLSSHRSTLISEAVSGAHHVVAVLTTLALALFSSVFFIHSGDRQWAWF 187

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R   +       G+ ++A    +++G A WL GVP  V L ++ 
Sbjct: 188 KEQLPGSVRERVATGGRAAWRTFTGYTHGIVLVAAVNAVLVGIALWLLGVPLAVPLALLE 247

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A +P    P++    ++  L       A  +     +   I    L P ++   ++L
Sbjct: 248 FLAAFVPLIGSPVALAVAAVVALAAKGPVVAAIVIGLIVVIGQIEGHLLHPIVMSWAVRL 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L     +V G    G++G  +   L+++I  +
Sbjct: 308 HPLVVAVTVVAGTIAAGIVGAVVAVPLVSVIWSV 341


>gi|323489867|ref|ZP_08095091.1| hypothetical protein GPDM_10965 [Planococcus donghaensis MPA1U2]
 gi|323396502|gb|EGA89324.1| hypothetical protein GPDM_10965 [Planococcus donghaensis MPA1U2]
          Length = 363

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/356 (12%), Positives = 109/356 (30%), Gaps = 24/356 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPV--LSALIIG---------FTSWPIYSSFISKKEESST 60
              +++ I L  L  +     P+  + A I           +   PI +           
Sbjct: 12  TAILLVAITLFFLGKIDYVLEPIQIVIATIFAPVLLGGLFYYLLRPIVNWLAR--FVPKI 69

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               I    +     + L F       ++  LV+      +                   
Sbjct: 70  VGIGIIFTIIALTASLLLYFFGPVITKQVDSLVNLAPETVEEVTEESNSFIANF------ 123

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +      S   +       N  + +         + ++  + +I +   LFF  +D
Sbjct: 124 ----QFGGVTGSEIRMWTLDYVENLSEGLLNNVMDILTMLMNVVVVLIVVPFVLFFLLKD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  L            KKI + V + +    +G   +A   G+++   Y + G+  
Sbjct: 180 DDKFIPHLTKYLPEEHKMEGKKILKDVDQTLSDFIVGQAFVAGVVGVLMYIGYLIIGLDY 239

Query: 241 HVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            ++L +    + ++P   P+          L  G+++ A  + L   +   +    + P 
Sbjct: 240 ALSLAIFAMFLIIVPFLGPLLGIVPALFVALTSGDMWMAVKVILVLLVVQQLEGNLVTPN 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           ++G  + +  L     L+      G +G+ I     A++  +     +  +  K++
Sbjct: 300 IMGNRLNIHPLTIILLLMIAGALYGFIGILIAIPTYAVLKTLVHNFRLFNRLRKKR 355


>gi|123966243|ref|YP_001011324.1| permease [Prochlorococcus marinus str. MIT 9515]
 gi|123200609|gb|ABM72217.1| Predicted permease [Prochlorococcus marinus str. MIT 9515]
          Length = 347

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 112/340 (32%), Gaps = 3/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            ++ ++ I  + ++ L+ F   ++ +L+I      + +   S  +    F  +I    + 
Sbjct: 7   FKFAVVIISFLIVWTLRDFLLLIICSLVISNVVSNLCNQIQSILKLPRFFSLLIVIFGIS 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +  + +    + E  E++  +         +     +    +   E     +    
Sbjct: 67  FIIFIISILVLPPFVREFNEILIDIPNGLSKINVLINSNLNKFNDLLYGEESENVVDIFS 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSISQQL 188
            +  +            I         +  +     + IIF+++  F    +  +  + +
Sbjct: 127 LVNDVVPIPDGATIAKAIQESFVNIINLAGNLGTGLIRIIFVLVVSFMISIEPKAYKEGV 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +   ++    + I       + +    + I ++  GL+      +  V   V+  +I 
Sbjct: 187 LLIVPKVYRNKSRIILDKCNVALTNWTFSIVISSLSVGLLSLIVLSILDVKYVVSNAIIA 246

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             + +IP   P+      + + +  N +    +F    I   I    + PF++     L 
Sbjct: 247 MTLNIIPNIGPVLSGIFPVSIALLDNFWKPVAVFGAYIIIQNIESYVIMPFILKKKTNLL 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              T     G     G LGL +   +  +  V+ KE I  
Sbjct: 307 PGLTLISQFGLTFIFGPLGLVLSLPIAVVTQVLIKEIINE 346


>gi|212696611|ref|ZP_03304739.1| hypothetical protein ANHYDRO_01151 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676342|gb|EEB35949.1| hypothetical protein ANHYDRO_01151 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 296

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 36/276 (13%), Positives = 93/276 (33%), Gaps = 2/276 (0%)

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRW--LSDIPGGMWASELWTKHLSHPQSLKILSE 138
           +       +  L+ +  +     + +     ++          +++   +H         
Sbjct: 1   MIPRISSAVTTLIDRFPVFLNDFVKLLNKNKITKRFADDVQKYIYSVDWNHKLVQVRDYF 60

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                N  D      +      +    S+IF +  L          ++ + S+ +     
Sbjct: 61  MGEAGNIFDKTTTIINSVSSTLVTVATSLIFSVFVLISKKDLKILANRVIYSIFKKETAD 120

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K++ +      S      + ++  GL++    ++  +P      ++ AI   IP   
Sbjct: 121 EINKVASLSYSTFASYINSKALSSLILGLLVLIGMFILKIPFAAMAAIMVAIADFIPYVG 180

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+  T + + L+   + F +    ++  I   +    + P L G  I LP +     +  
Sbjct: 181 PLIATIIMMILIFIESPFQSLVFLIFLLIVQQVQGSIIYPALAGKTIGLPSIWIIVSIAI 240

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G    G++G+ +   + +++  +  E +    E KE
Sbjct: 241 GGSLFGVVGMLVSIPIASILYTLMNEKMDKKLEKKE 276


>gi|57641584|ref|YP_184062.1| hypothetical protein TK1649 [Thermococcus kodakarensis KOD1]
 gi|57159908|dbj|BAD85838.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus kodakarensis KOD1]
          Length = 345

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 125/346 (36%), Gaps = 29/346 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     +   +I  I+ VS   +  F  P+   LI+ +  +PI+           +   +
Sbjct: 1   MRAETAVWAAVIAVILYVSWRVILPFLEPLFFGLILAYAFYPIHRRLRKFVGNRESAAFI 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             T  V+   +                 +            V  W+  +P    A     
Sbjct: 61  SFTFLVLGGTLTF---------ELAMMSLKLASSFAGSIRDVINWILTLPLPEDARTFIL 111

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                           +K      I  + S        Y + +    +A ++       I
Sbjct: 112 N---------------IKAEATTRIAEYVSSRAFSIPLYVIQLTVFFLAFYYGLAYSEQI 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS---H 241
           ++ +  L         ++I   V K + +      ++ + +G+++   Y + GV      
Sbjct: 157 ARTIRELLPEENRELGEEILTSVHKTLSALVRAWLLLNVAKGILMTLGYIVFGVSDVYTA 216

Query: 242 VALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           V  G +T   + +P     + + A +IY  + G   +A  + ++GA  +  + D T+RP 
Sbjct: 217 VIAGFLTFAFSFVPLFEGWMIWLAAAIYFALNGMYLHAIGISVYGAFLVSPMPDYTIRPM 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LV    +L     F G+VGG   MGL G+ IGP+++ ++ V+ KE 
Sbjct: 277 LVARDTELDETLVFIGMVGGTWAMGLKGIIIGPIVLNVLLVLIKEW 322


>gi|296271616|ref|YP_003654247.1| hypothetical protein Arnit_0071 [Arcobacter nitrofigilis DSM 7299]
 gi|296095791|gb|ADG91741.1| protein of unknown function UPF0118 [Arcobacter nitrofigilis DSM
           7299]
          Length = 340

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 104/338 (30%), Gaps = 22/338 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                      + +I+  +         +  A+ I      +      +         +I
Sbjct: 5   KIRNYFFYLACIVVIIAGVKIASEIVIVLFLAIFISSIISTLIKILDKRHIPK-----LI 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + + V+  F +  L L Y   + +K+ ++ +    +        +  +            
Sbjct: 60  SYLLVLGFFTLISLLLAYIVNISLKDFITNLPTYEEKLQQTIVNIISLAENY-------- 111

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I  +T L    ++      +        +    + +II + F   +  S  
Sbjct: 112 ------GYSIDKKTILDALNLNSFFGITTNLIGSIGTFLSKFLLIIIGIGFILAESKSFE 165

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++L  L          +   +    I+  FL  T  +   G ++        +   +  G
Sbjct: 166 KKLKILFRKESDKI--EHFNLFSNNIQKYFLVKTATSFLTGFLVAITLIFFDISYPILWG 223

Query: 246 VITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           VI  +   IP    I     +I L  +  ++     L +        +   + P  +G  
Sbjct: 224 VIAMLFNFIPVVGSIIAAVPAILLSFLTSDLNTTLILIVLYLAINIFISNIIEPKFMGKE 283

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + L  L  FF L+     +G++G+F+   +   + + +
Sbjct: 284 LGLSPLVIFFSLILWGWVLGIVGMFLAVPITMTLKIAF 321


>gi|294630421|ref|ZP_06708981.1| integral membrane protein [Streptomyces sp. e14]
 gi|292833754|gb|EFF92103.1| integral membrane protein [Streptomyces sp. e14]
          Length = 342

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 89/293 (30%), Gaps = 19/293 (6%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            P++   +  +  + +  A I   +V+ +       +    +   +++   +  A +   
Sbjct: 53  RPLFRRLVRARV-NRSVAAGITCAAVVVVVGGTGYIVVRALIDSWQQIADSLEHAAKSLA 111

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                                      S        L +               +  +Y 
Sbjct: 112 SHL-----------------GPAGTSLSDLAGQGRNLLSKFGGTAASGVISGVSVVAEYA 154

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
              +  ++ +FFF RD     + L +L         + ++R     +     G TIIA  
Sbjct: 155 AMAVLALLLVFFFLRDAGRARRALRTLSPGDSADTVESMARRAFTAVEGFMRGTTIIAFI 214

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFL 283
           + + +     L  VP  V LG +  + A IP        AVS+ + +       A     
Sbjct: 215 DAVCITVGLLLLDVPGAVGLGALVFVGAYIPYLGAFISGAVSVLVALADRGFAVALWALG 274

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                  +    L+P +    +++        +  G    G++G+ +   L A
Sbjct: 275 VVVAVQLLEGHVLQPLIQSRTVQMHPAAVLLAITAGASVAGIVGMLLAVPLTA 327


>gi|257465012|ref|ZP_05629383.1| membrane protein [Actinobacillus minor 202]
 gi|257450672|gb|EEV24715.1| membrane protein [Actinobacillus minor 202]
          Length = 354

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 15/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T    +  +    + IIL  +          L +L I     P+     ++K       
Sbjct: 2   QTSSLTRFFLATAAIVIILAGVKLAGEIVIQFLLSLFIAIICSPVIRFMTNRKIP----- 56

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A   +  LFI+   FL       ++E  + + L  +        L            
Sbjct: 57  LGLAVAFLFVLFIIAFFFLASMINNTIREFTTSIPLYKETLAMKLNTLEAFIQKWNLPIS 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +          + + F  +  +  + R    F  +  +  + ++ ++  LF       
Sbjct: 117 LPE--------MSILDNFDPSVVMRLVSRLLLSFSDVVSNIFMLLLVVVFMLFESPTIKH 168

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++                 I+R+V  +IR      T+++   G  +       GV   V
Sbjct: 169 KLAIAFSHNNPKKIKQEEDHINRVVESIIR-YLGVKTVVSALTGFCIWLLLESFGVQYAV 227

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              V+  ++  IP    I      +   LI  +   A  + +       I+   L P ++
Sbjct: 228 LWAVLAFLLNYIPNIGSILAGIPIVLQALILNDFPIAAGVTIGVVAINMIIGNILEPKMM 287

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G  + L  L     L+     +G +G+ +   L   + +  +
Sbjct: 288 GKTLGLSTLVVTLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|197337673|ref|YP_002158735.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
 gi|197314925|gb|ACH64374.1| hypothetical membrane spanning protein [Vibrio fischeri MJ11]
          Length = 362

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 58/347 (16%), Positives = 122/347 (35%), Gaps = 7/347 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
            +  ++L     LK F   ++   II    +PI + F  K   S + +++I TV  + L 
Sbjct: 20  ALSVLVLWCFSILKPFLLLMVWGGIIATALYPIVAFFSKKTALSESKVSIILTVIGVLLL 79

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++PL+ L         EL       +         + D P     +  +    S      
Sbjct: 80  LIPLIALSTGIYTSGTELFLGYQDGSIAIPKPKERMQDWPIIGHEAYSFMSLASSNLESL 139

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   +                 G  F+ + +S I   +    F  +     +    +   
Sbjct: 140 LFKYSAEVKVVAAKAASLVGSLGGGFIQFIVSTIIAGV----FMANATKCERAFILITNR 195

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMA 252
           L   + +++ ++    IRS   G+  +A+ +  + G      G+   V      +  + A
Sbjct: 196 LTGKHGEELIKLSKVTIRSVVQGVIGVAVIQATMAGLGMAAVGISVSVLGLWVFLVLVFA 255

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +I     +    +  Y+             +W  +     D  L+P L+     +P +  
Sbjct: 256 IIQLPPILILLPIIFYVFSVDTTTTGVLFAVWCVLVSS-SDAILKPVLLSRGSHIPIIVI 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G +GG+   G++GLF+G V+++L   ++   +    E  +    N
Sbjct: 315 LLGALGGMAMSGIVGLFVGAVVLSLTYQMFTVWLKNEAEETQNAKDN 361


>gi|104774189|ref|YP_619169.1| hypothetical protein Ldb1304 [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103423270|emb|CAI98105.1| Conserved hypothetical membrane protein [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 377

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 1/250 (0%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L  +       +       +     +  + +  +  + ++ +   R      D+   +IF
Sbjct: 124 LDSLESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIF 183

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I  L+   R      + L +L         K       +       G  I A   GL++
Sbjct: 184 AIYFLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRSFSGYIRGQIIDAFIVGLLV 243

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIE 288
             A  +A VP  + +G++T +  +IP   PI    + I          A  +  +   + 
Sbjct: 244 SLAMLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLI 303

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I  
Sbjct: 304 QAIDGNILNPKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAY 363

Query: 349 IKENKEKISS 358
            ++  EK   
Sbjct: 364 RQKQLEKSKE 373


>gi|291452564|ref|ZP_06591954.1| integral membrane protein [Streptomyces albus J1074]
 gi|291355513|gb|EFE82415.1| integral membrane protein [Streptomyces albus J1074]
          Length = 358

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 104/340 (30%), Gaps = 19/340 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   + ++ +      +    PVL AL+      P++   + +     +  A +   +V
Sbjct: 16  LLVTGVAWVAVWLCVLFRAAVIPVLLALLGTALLTPLHRRLL-RMRVQRSLAAGLTCAAV 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +       +    +    ++V+   LA Q                             
Sbjct: 75  LVVVGGATYIVVLALVDSGDQIVASAKLAAQDVAGFL-----------------GADEAS 117

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 +   L                 +        +  ++ +FFF RDG  +   L +
Sbjct: 118 LDDLASNARELFDRFGGPAASGVISGLGLVAQAGAMGVLAVLLVFFFIRDGDRVVGSLRT 177

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +         + I R   + +     G T+IA+ +G++      L GVP    LG +  I
Sbjct: 178 MAPGHVGEITEAIGRRAYRAVEGFMRGTTMIALIDGVLTTIGLLLLGVPGAAGLGALVFI 237

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP     +S     +  L    +  A    L   +   +    L+P +    +++  
Sbjct: 238 GAYIPYLGAFVSGVLAVLVALADRGVVIAAWTLLVIFLVQMLEGNVLQPVIQSRTVQMHP 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                 +  G    G++G+ +     A    I  E     
Sbjct: 298 AVVLVAITAGATVGGVIGVLLAVPATAAAFGIVAELRERY 337


>gi|218263328|ref|ZP_03477475.1| hypothetical protein PRABACTJOHN_03160 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222806|gb|EEC95456.1| hypothetical protein PRABACTJOHN_03160 [Parabacteroides johnsonii
           DSM 18315]
          Length = 341

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 139/345 (40%), Gaps = 20/345 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+ + ++       F   +L A  I             KK    +F+A+I  +
Sbjct: 14  KYSLVTIIIVLGMILFVEFIPFLGGILGACTIYILVRKQMLYLTEKKHLRRSFVAIILLL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +  F++PL    +  + +++                    +  P  +  S     +L 
Sbjct: 74  ETILCFLIPLSLAVWLLINKLQNF------------------NLDPTQLVKSAEHIANLI 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             ++   + +T    + +  +P+           + +++  +++ L+F    G  + + +
Sbjct: 116 EQRTGYDVLDTSNIMSAVSILPKIGQVLMGGISGFAINVAVLVLILYFMLIGGAKMEKYV 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S+         K +   +  ++ S  +G+ ++AI +GL+    YW+  VPS    G +T
Sbjct: 176 YSILPFS-DENKKNVLNEINMIVTSNAIGIPLLAIIQGLIALLGYWIFDVPSPFLFGFLT 234

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  +++Y+++ G+  NA  L  +  I +  VD  +R  L       
Sbjct: 235 CFATIIPVVGTALVWLPLALYMVLTGDWVNAAGLTAYALIIITNVDNLIRFILQKKMADT 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L T FG++ G+   G +G+  GP+L+++  + +        +N
Sbjct: 295 HPLITIFGVIIGLSLFGFMGIIFGPLLISIFILCFNIFKEKYLDN 339


>gi|172035592|ref|YP_001802093.1| hypothetical protein cce_0676 [Cyanothece sp. ATCC 51142]
 gi|171697046|gb|ACB50027.1| hypothetical protein cce_0676 [Cyanothece sp. ATCC 51142]
          Length = 340

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 37/319 (11%), Positives = 87/319 (27%), Gaps = 21/319 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +    P+  A  I    +P+ +          + + V+  +  +       L L    + 
Sbjct: 28  QPISMPLAFAFFIVVLVYPLQNRLEQNLPRWLSLIIVLLVLGGVVALAQGALSLSAEIIE 87

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                  KV         +                      +   ++             
Sbjct: 88  ------PKVPQYLDRLEQMWETAQSWANNYGLPVPHFNSQINNTPIQ------------- 128

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            + + A       +     +I  I  L     +     +++          +        
Sbjct: 129 -LTQQAISGFQTVISTISLLILTISLLILLLLEVSQYKRKVQQAFSSRTSQHIINAVGNT 187

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVS 266
            + +R     MT   I  G++ G    + GV   +   +I  I+  +P    I      +
Sbjct: 188 SEKLRRYLTVMTFTCILTGVLTGIWCLIIGVDLALVWALIAFILNYVPTLGSIIAVIPPT 247

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +  ++   +       +   I   I+   + P + G  ++L      F +V      G+ 
Sbjct: 248 VIAILFNGVPRGIATVIGLGIIQVIMGNFVDPRIQGKTLQLSPFIALFSIVFWGWIWGIP 307

Query: 327 GLFIGPVLMALIAVIWKES 345
           G  +G  +   I +  +E 
Sbjct: 308 GAILGIPMTISIILFCQEF 326


>gi|110634577|ref|YP_674785.1| hypothetical protein Meso_2229 [Mesorhizobium sp. BNC1]
 gi|110285561|gb|ABG63620.1| protein of unknown function UPF0118 [Chelativorans sp. BNC1]
          Length = 392

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 132/344 (38%), Gaps = 14/344 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++    +  + +S      F   ++ A+++G    P+          +    A ++    
Sbjct: 32  VLVAAAVLGVYLSYRLALPFLPALVWAVVLGVLIAPVQPKLEMHLGAN--VAAFVSASVA 89

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I+ LLF+    + E  +    +  A +        ++ +P     +    + L   
Sbjct: 90  ALIVILLLLFIVQQLVREAADGAMNIESALRS-SDWQSIINGVPIFSTLAAWLGERLDL- 147

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     +      ++   ++      ++  ++++ +   LF+F RD     + L  
Sbjct: 148 --------AGMMGRIAQWLTAQSATLLRGSINQAITLLLVFYMLFYFLRDRKLAVRALGE 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L       I       + +T  G  I+A  +G + G  +WL G+P+    G++  +
Sbjct: 200 FSP-LNGDETAHIVAGFVDTVHATMFGTLIVAAVQGTLGGLMFWLLGLPAPAFWGLVMGL 258

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +A++P     + +   +I+L ++G    A  L +WG + +  +D  L P  VG  +KL  
Sbjct: 259 LAIVPVLGAFVVWVPAAIFLAVEGEWVRALVLVIWGGVIIATIDNLLYPIFVGNRLKLHT 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +  F G VGG+   G  GL +GP  +++   +        +   
Sbjct: 319 VLAFIGAVGGIILFGASGLVLGPATISITLALIAVLKGRFQGEP 362


>gi|255037065|ref|YP_003087686.1| hypothetical protein Dfer_3310 [Dyadobacter fermentans DSM 18053]
 gi|254949821|gb|ACT94521.1| protein of unknown function UPF0118 [Dyadobacter fermentans DSM
           18053]
          Length = 354

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 111/323 (34%), Gaps = 18/323 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           V++Y  +    P+  A ++     P+    +           +IA    + L I+ +  +
Sbjct: 3   VAIYLGQDIIVPLALAGLLAVLLRPLEQRLMRMGIPK-----LIAITLALTLAILVVSAV 57

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                +++ +   +     ++     R         ++     +      +     ETF 
Sbjct: 58  AVLISMQVADFSDEWPKLKRNIDHFYRDARRWIRREYSVSYRQQAEYLKNAQTKTLETFQ 117

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +                    + I  F        +      L          
Sbjct: 118 GPETLGAVTGPLGTLI-----------LIPIYTFLLLYYRAMLIHFSVVLFAEEQKHRVL 166

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +I   +  +I+S  +G+ +      ++  +   +  V   + LGV+ AI+ ++P    + 
Sbjct: 167 EILGEIKSIIQSYMVGLLLETTAVAVLNSAGLLVLNVQYAILLGVMAAILNLVPYIGGLV 226

Query: 262 FTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            TA+++ +    +        +     +   I +  L PF+VG  +K+  L +  G++ G
Sbjct: 227 ATALAVMVTFISHPEIDVLLGVVGIFIVVQIIDNNFLVPFIVGSKVKINALVSIVGVLVG 286

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               GL G+F+    +A++ VI+
Sbjct: 287 GALAGLSGMFLSIPAIAMMKVIF 309


>gi|298209214|ref|YP_003717393.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
 gi|83849141|gb|EAP87010.1| putative transmembrane protein [Croceibacter atlanticus HTCC2559]
          Length = 339

 Score =  100 bits (249), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 122/331 (36%), Gaps = 21/331 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  +   VL A+             + K   +    + +  +      +VP+  +     
Sbjct: 29  IIPYLGGVLGAITFYVLLRKWMVILLRK-GWNENLASGLLMLGSFVGILVPISLIIIMLT 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ + V       +             G   +S++                        
Sbjct: 88  SKIGKAVDNSERVIEAVKTQVDKWELSVGYDLSSQID------------------TGKIA 129

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            ++            D  ++I  +   L++   +   + + LD             I + 
Sbjct: 130 SWVGDNLKNLAGGTFDAFIAIGILYFMLYYMLTNRSQLREALDEYIPIGHDNLIL-IGKE 188

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAV 265
              ++R+  +G+ ++AI +G++    + + GVP      VIT I +MIP     I    V
Sbjct: 189 SSDLVRANAIGIPLVAICQGIIALIGFLIFGVPDPFFWFVITTIGSMIPFIGTAIGIIPV 248

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I L  +G  + A  +F++G + +   D  +R +++     +  L T FG+V GV   G 
Sbjct: 249 TILLYAQGMHWQAIAIFIYGMVVVGATDNFIRLYMLQKLSNVHPLITLFGVVVGVPLFGF 308

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +GL  GP+L++L  +I K       +N+ ++
Sbjct: 309 IGLIFGPLLISLFLLIVKIYKNEYGKNEARL 339


>gi|329904575|ref|ZP_08273875.1| hypothetical protein IMCC9480_2159 [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547902|gb|EGF32653.1| hypothetical protein IMCC9480_2159 [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 354

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 111/336 (33%), Gaps = 11/336 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES--STFLAVIA 66
           + +   +++   L   Y ++     V+ A+   +  +P+       K      T    I 
Sbjct: 10  RVVWTGLLVAFFLFVAYSVRSTLLVVVFAIFFSYLLYPLVGLIERFKPLRVPRTVSIAIV 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + +F             E   L  ++           R           +++    
Sbjct: 70  FIFAVLVFGAAGALFGSTITEEAMRLSQQLPTLLDPANISARIPLPGFLEAQRAQILAFV 129

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               Q     +    +  G++          M      + +I + +  F   ++   +  
Sbjct: 130 TEQVQHGTGQALPMAQRLGME---------VMHVATNLIYLILIPVLSFLLIKEAPLLRA 180

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +  S         W+ I   +  ++      + ++++   +V    +   GVP  + L  
Sbjct: 181 EFLSSLGAASAPLWRGILEDLDVLLSKYVRALLLLSMATFVVYSLVFSALGVPYSLLLAG 240

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  ++ +IP   P+S   + + +       +   L ++        D  L P L+   ++
Sbjct: 241 VAGLLEVIPFVGPLSAVLIILCVSAFSGFPHLLWLLVFIIAYRMFQDYVLSPMLMSEGVE 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L    GL+ G    G++G+F+   ++A I ++ 
Sbjct: 301 VSPLLVIVGLLAGDELAGVIGIFLSVPVLAAIKILI 336


>gi|313124003|ref|YP_004034262.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280566|gb|ADQ61285.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ND02]
          Length = 377

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 1/250 (0%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L  +       +       +     +  + +  +  + ++ +   R      D+   +IF
Sbjct: 124 LGSLESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGMIF 183

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I  L+   R      + L +L         K       +       G  I A   GL++
Sbjct: 184 AIYFLYDGQRIAAYWKRNLGTLLNKKVIRGIKIFLADADRAFSGYIRGQIIDAFIVGLLV 243

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIE 288
             A  +A VP  + +G++T +  +IP   PI    + I          A  +  +   + 
Sbjct: 244 SLAMLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLI 303

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I  
Sbjct: 304 QAIDGNILNPKLLSSAIHIHPLYVIVCVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAY 363

Query: 349 IKENKEKISS 358
            ++  EK   
Sbjct: 364 RQKQLEKSKE 373


>gi|309775840|ref|ZP_07670834.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916378|gb|EFP62124.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 358

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 3/314 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ ++ V L ++     P L   +I F   P+     +         + I  +      
Sbjct: 18  IIITLLYVFLRYVMYAIMPFLIGFLIAFMLRPLIKKLTAMSGGHERLWSTIVILLFYTTI 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT---KHLSHPQ 131
            V +  L   G   +K+ V  +    Q  +      +         E+     + +    
Sbjct: 78  GVFVTLLSMKGFAFLKDFVENIPRLYQENLEPFLNDTLGNVESVWKEVDITSAQAIQSFL 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                S   + ++    +    +       +  +S  F II+ FFF  D   I   +   
Sbjct: 138 DGLQSSLYSIISSISKSLVSMFTGAAASLPNLVISFFFAIISSFFFNADYQRIISFIIRQ 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                              I S  L    I +   L L    ++ G+ + + +  + AI 
Sbjct: 198 LPEKGAQIVFTARHYFTDTIASFALAYEKIMLLTFLELTIGLYVLGIENALVIAFLIAIF 257

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P           I +    N    +   L   + + ++   + P +VG  I L  L 
Sbjct: 258 DVLPVLGTGGIMIPWILICFLNNQIKTSVGLLILYLVITVIRNIIEPKIVGKQIGLHPLL 317

Query: 312 TFFGLVGGVRTMGL 325
               +  G +  G 
Sbjct: 318 MLLCMYLGAKLFGF 331


>gi|300812578|ref|ZP_07092995.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496451|gb|EFK31556.1| putative membrane protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 377

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 1/250 (0%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L  +       +       +     +  + +  +  + ++ +   R      D+   +IF
Sbjct: 124 LGSLESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIF 183

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I  L+   R      + L +L         K       +       G  I A   GL++
Sbjct: 184 AIYFLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRAFSGYIRGQIIDAFIVGLLV 243

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIE 288
             A  +A VP  + +G++T +  +IP   PI    + I          A  +  +   + 
Sbjct: 244 SLAMLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLI 303

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I  
Sbjct: 304 QAIDGNILNPKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPIGALLKTEFERLIAY 363

Query: 349 IKENKEKISS 358
            ++  EK   
Sbjct: 364 RQKQLEKSKE 373


>gi|254372555|ref|ZP_04988044.1| conserved hypothetical protein [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570282|gb|EDN35936.1| conserved hypothetical protein [Francisella novicida GA99-3549]
          Length = 346

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 122/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 75  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 135 KDMIISNLGKILPTIRYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLKDF-- 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 193 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|282158796|gb|ADA78187.1| hypothetical protein NE061598_02800 [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 341

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 121/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 12  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 70  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 129

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 130 KDMIISNLGKILPTIRYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILKDF-- 187

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + +  +PS +  G I AI +M+
Sbjct: 188 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVDIPSPILFGFIAAIASMV 244

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 245 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 304

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 305 GIMGGIHAFGFIGIFLGPVIFNVAFV 330


>gi|107026443|ref|YP_623954.1| permease-like [Burkholderia cenocepacia AU 1054]
 gi|105895817|gb|ABF78981.1| permease-like protein [Burkholderia cenocepacia AU 1054]
          Length = 385

 Score =  100 bits (248), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 108/256 (42%), Gaps = 5/256 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F          T +A + T ++  L ++P+    
Sbjct: 35  WVIRDFIPAIAWACVIAIAMWPLLKRFESHRLFRSRPTLIATVITAAISLLVVLPVAVAT 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +  +L   +     +GIP+P  +S +P G      W +         + + T + 
Sbjct: 95  TQAFAQAHDLREWLHTVQDNGIPLPDVVSRLPYGAAQITEWWQANLGHP---LHAATAMH 151

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +    F  +FG       L   FM++ LF   R G  +S  L       F     +
Sbjct: 152 GVNGEKFIAFGRQFGTKLAHVLLEFGFMLVTLFVILRAGHKLSGALLQGARRAFGRNGAE 211

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   +   +  T  G+ ++ +GEG +LG AY LAGVP    LG++TA+ AM+P  AP+ F
Sbjct: 212 LIERMVAAVYGTVTGLVVVGLGEGALLGVAYALAGVPHAALLGLVTAVAAMLPFCAPVVF 271

Query: 263 TAVSIYLLIKGNIFNA 278
              +++L ++G     
Sbjct: 272 CGAALWLFVQGGDHVG 287


>gi|289669297|ref|ZP_06490372.1| transport protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 368

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 105/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +    +  +L+  +    PV+ A        PI      K        A++     +
Sbjct: 31  MVVLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGL-RKLYIPRFLGALLILCLGL 89

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +   + L        ++   ++    +    + + +                     
Sbjct: 90  AGTVTLAVQLAGPAAEWAQQAPQQMRQIARDVRDLTKPVMQANQAAENFARAAGGEGQRG 149

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 150 VQIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 198

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     +   +P    +  G + 
Sbjct: 199 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYALKIPLPEAILWGTVV 258

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 259 ALLNFAPYVGPLIGVMLMLLMGFVEFRGTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 319 ISPLMLILALMLFGWAWGMVGLLLAVPLLVCIKMVL 354


>gi|222480361|ref|YP_002566598.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453263|gb|ACM57528.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 346

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 135/347 (38%), Gaps = 4/347 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   Q  +  +I  + L++L+ ++ F   V+++ I+ +  +P +       +E  +    
Sbjct: 1   MNRGQSFLLLLIGSVALLTLFVIRPFIEYVIASAILAYVLFPFHVRLSRGLQEGLSNRFR 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            +    +   +  L  +    +  +  L     +  +    + R  SDI      +EL  
Sbjct: 61  ESLARQLGYMLSALFLIVSSIVAVILPLAYISWVFVRDLTEIARGNSDIDVEAIETEL-- 118

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+  Q       T +     + +           L   + +   +  +++   DG + 
Sbjct: 119 AALTGEQIEVGEVLTTVGQVLANTLFGGLGGIVTTALRASVGLSLALFLVYYTLLDGPAF 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + L      L       +   V  + R   +G  ++A+ + LV G   W AG+P+ V  
Sbjct: 179 VRWLRQTSP-LPADVTSDLVDRVDAMTRGVVIGHIVVALLQALVAGLGLWAAGIPNVVFW 237

Query: 245 GVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             + A++A++P       +   + YL+    +     L ++G + + +VD   RP ++  
Sbjct: 238 TFVMAVLALVPLVGAFFVWGPAAAYLVAIDQVTAGVFLAIYGVLVIAMVDNYARPIVIDQ 297

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              L       G+ GG+ ++G  GLF+GP+++ ++A   +       
Sbjct: 298 QAHLNPAVILLGVFGGIYSIGFTGLFVGPIVIGVLAATLETFREDYD 344


>gi|89890618|ref|ZP_01202128.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
 gi|89517533|gb|EAS20190.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
          Length = 340

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 118/331 (35%), Gaps = 21/331 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  +   +L A+ +     PI     SK     +  +         + ++P++ +     
Sbjct: 30  LAPYLGGLLGAITLYVLLEPIQKWLESK-NWKPSVASSFLIALSFVIILLPIVGIGLMMS 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K  +       +          ++ G   +  + T+                     
Sbjct: 89  SKVKTAIDNSTQITETIKSKVAETENLIGVSVSENINTEE------------------VS 130

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            ++           L   +SI  M   L+F   D     +        L     K I + 
Sbjct: 131 SWVSSNVQNLANSSLTVSISIGIMFFLLYFMLVDRKKWLEAALIYMP-LKEKNLKIIGKE 189

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT-AV 265
              +++S  +G+ ++A+ +G+V    Y++ GV +     VIT I +MIP          V
Sbjct: 190 SIDLVKSNAIGIPLVALLQGIVALIGYFIFGVENPFFWFVITVIGSMIPFVGTALGILPV 249

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I L  +G    A  + ++G I +   D   R  +      +  L T  G+V GV   G 
Sbjct: 250 TILLFSQGETAAAIGILIYGVIVVGSTDNLFRLVVQKRLADVHPLVTLIGVVVGVPLFGF 309

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +GL  GP+L++L  ++ K       +  E I
Sbjct: 310 IGLIFGPLLVSLFLLLLKIYKNEYGKEGETI 340


>gi|110639081|ref|YP_679290.1| transport protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281762|gb|ABG59948.1| transport protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 371

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 105/321 (32%), Gaps = 16/321 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            + + K F  PV  A ++     P+           +   ++I ++ +  + I  + +  
Sbjct: 22  GMIYAKAFLVPVFFAGLLSLLLLPVSKKIQK--FIPNEVCSIILSLVLFLIIICSVSYFI 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              +  +      +    +      +   +   GM   E         + L         
Sbjct: 80  STQVSNIISDYDMIESKIKTKAHALQATVNEYTGMDEKEQEAWFDKESEQLLKSGFQK-- 137

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                      +   +   ++   +  ++I  FF       I   + SL +         
Sbjct: 138 ----------GTTLLVGVGNFVFGLTLVMIYTFFLQLYRGKIKLFILSLIDEQQHEKALS 187

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   V  ++     G+ I     G++      L G+   + LG++   + +IP       
Sbjct: 188 ILNKVQSLVMHYITGLCIALSIIGVMNAVGLTLLGIEHGIFLGLLAGFLNIIPYIGSFVG 247

Query: 263 T--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + + L+ K +++    +        FI +    P +VGG ++L  L T F ++ G 
Sbjct: 248 AGLPMIMALIYKDSLWYPVGVLAIFMFNQFIDNNITTPNVVGGYVRLNSLATIFIVIIGG 307

Query: 321 RTMGLLGLFIGPVLMALIAVI 341
              G+ G+ +   L+ +  + 
Sbjct: 308 MIWGVAGMVLFIPLLGIFKIF 328


>gi|319953361|ref|YP_004164628.1| hypothetical protein Celal_1829 [Cellulophaga algicola DSM 14237]
 gi|319422021|gb|ADV49130.1| protein of unknown function UPF0118 [Cellulophaga algicola DSM
           14237]
          Length = 342

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 115/327 (35%), Gaps = 21/327 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  + + VL A+             + +   +S     +  +  +   ++P+  +     
Sbjct: 29  MLPYLSGVLGAITFYVLLRKPMGKLVKR-GWNSDLAVSVLLIGSVIGILIPVGGIILMLA 87

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +++  V+      +          D  G    S++                    +   
Sbjct: 88  NKIENTVAHSEDVIKASKKQLGTWEDKIGYDLTSKID------------------ASAVS 129

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            +I      F     +  +++  M   L++   +   + + L            K I + 
Sbjct: 130 SWISDSLQSFAGGTFNILIALGLMYFMLYYMLTNRRQLRESLYEYIPIGN-DNLKIIGKD 188

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
           V  ++RS  LG+ ++A  +G+V    + +  +       VI  + +MIP          V
Sbjct: 189 VQAMVRSNALGIPLVAFAQGIVALIGFLIFNIEQPFFWAVIVFVGSMIPFIGTFIGTLPV 248

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I  L  GN F A  + ++G + +   D  LR  ++     +  L T  G++ GV   G 
Sbjct: 249 FILTLASGNDFQAWGILIYGLVVIGSTDNLLRLVILKRIDNVHPLITLIGVIVGVPLFGF 308

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKEN 352
           +GL  GP+L++L  ++ +       + 
Sbjct: 309 IGLIFGPLLISLFLIVLRIYKDEYGQE 335


>gi|116514279|ref|YP_813185.1| permease [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|116093594|gb|ABJ58747.1| Predicted permease [Lactobacillus delbrueckii subsp. bulgaricus
           ATCC BAA-365]
          Length = 377

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 1/250 (0%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L  +       +       +     +  + +  +  + ++ +   R      D+   +IF
Sbjct: 124 LDSLESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIF 183

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I  L+   R      + L +L         K       +       G  I A   GL++
Sbjct: 184 AIYFLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRAFSGYIRGQIIDAFIVGLLV 243

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIE 288
             A  +A VP  + +G++T +  +IP   PI    + I          A  +  +   + 
Sbjct: 244 SLAMLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLI 303

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I  
Sbjct: 304 QAIDGNILNPKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAY 363

Query: 349 IKENKEKISS 358
            ++  EK   
Sbjct: 364 RQKQLEKSKE 373


>gi|332140771|ref|YP_004426509.1| hypothetical protein MADE_1006845 [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550793|gb|AEA97511.1| hypothetical protein MADE_1006845 [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 347

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 99/344 (28%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++    + +++  +        P   ++ I     PI             
Sbjct: 3   MELRSPTAKILIVLACLVVVMAGVKAASAIMVPFFLSVFIAIACSPIIRWTSKFGVPK-- 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               ++   V+ L +V    L       M E    +            W+          
Sbjct: 61  ---WLSITFVILLIVVFGFLLAGLVGQSMTEFRENLPEYRNKLNTEFAWVVAKLAEFNIH 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  SH      +S      +G+  +        +  +        +   L     D
Sbjct: 118 INRELIASHLDPSTAMSVATNFISGMGGVLSNLFLILLTVIFMLFEADSIPRRLHIALAD 177

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                + +D                     + S     T++++G G+++G   ++ GV  
Sbjct: 178 PDMKLKHIDKFIR----------------SVNSYLAIKTVVSLGTGVIIGVWLYVMGVDH 221

Query: 241 HVALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +   V+  ++  IP    I       +   ++     A    L   +   I+   + P 
Sbjct: 222 FMLWAVLAFMLNFIPNIGSIIAALPAVLIAFVQLGPAAAGFAALGFLLVNTIMGNMVEPR 281

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+G  + L  L  F  L+     +G +G+ +   L  ++ +  +
Sbjct: 282 LMGKGMGLSTLVVFLSLIFWGWLLGTVGMLLSVPLTMVVKIALE 325


>gi|254470491|ref|ZP_05083895.1| transporter, permease [Pseudovibrio sp. JE062]
 gi|211960802|gb|EEA95998.1| transporter, permease [Pseudovibrio sp. JE062]
          Length = 360

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 113/343 (32%), Gaps = 21/343 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR+ ++  +      ++ +I   L+  +    P++ AL++ +    + S+        + 
Sbjct: 1   MRQPLI--KFTASLFLLVVIGWLLFIGRSLIIPLIIALVLWYIINSMSSALRHLPVVGTY 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +  +  +      +  LF    + +++L             +   L++        
Sbjct: 59  LPRPLTILLALFAIFYVVGILFNIVSVNLQQLAFDAPTYQGRLDELLLKLAN-------- 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                ++  P  L  +   F  +  +       +          + ++FMI     F + 
Sbjct: 111 ---QLNMEKPLQLSDILPNFSLSAALSTGASVLTSLAGSSSLVFIYVLFMIFEAATFDKK 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++ +  D +           I   + + +R      T ++I  G +  +    AG+P 
Sbjct: 168 LAALFEDSDRV------QLAFAIRGEIGRRMRHYMGIKTGVSIITGFLTYAITSWAGLPY 221

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               G I  ++  IP    +        L  +    +     + L      FI+   + P
Sbjct: 222 AALFGFIAFLLNYIPTIGSLIAVIFPSLLSLVYFDTLTPFIAITLGLGAVQFILGNLVEP 281

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+G  + +  L     L       G++G+ +   L+ L  +I
Sbjct: 282 RLMGTQLNISPLVIMISLSFWGALWGVIGMVLCVPLVVLAIII 324


>gi|168333789|ref|ZP_02692034.1| hypothetical protein Epulo_02740 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 345

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 111/334 (33%), Gaps = 6/334 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   +I  +I + + ++ G FAP + A +I F   P  +    +          +  
Sbjct: 3   KRIVNVIIIFGLIYIFVEYIFGLFAPFILAYLIAFLLNPFVNILKKRFNIPRGMGTXLCM 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++++   I  L+ +    + E+  L                 +S+         +     
Sbjct: 63  LTILSALIWGLVEVIKKLISEVVALSESFPAYKAELEAKLIEISETW------AIPLPAG 116

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  ++      ++ +  I   A             +I M+IA FF  +D + + + 
Sbjct: 117 FTSIDDILVELLNWFSDSLAQIVPLAYGTIKFVPSTLFFMIVMLIATFFITKDFYFLRRF 176

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +        +  K+   +            I+  G   +  +   +        L V 
Sbjct: 177 MYAQVPDNIRPHIDKMQIGLKTAFGGYVKTQFILMGGTFCICFTGLMVLKRDYAFLLSVC 236

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            AI    P     +F        +    ++     L     + I+ + L P ++ G I +
Sbjct: 237 IAIFDAFPVLGSGAFLITWGVYHLILGNWSLGLSLLSIYGIIVIMRQVLEPRVLAGQIGM 296

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             L T   +  G++  G +G+F+GP++   +  +
Sbjct: 297 YALVTVMSIYIGLQVFGAIGVFVGPMIAVSVQTL 330


>gi|325685991|gb|EGD28052.1| permease [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 378

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 1/250 (0%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L  +       +       +     +  + +  +  + ++ +   R      D+   +IF
Sbjct: 125 LGSLESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGMIF 184

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I  L+   R      + L +L         K       +       G  I A   GL++
Sbjct: 185 AIYFLYDGQRIAAYWKRNLGTLLNKKVIRGIKLFLADADRAFSGYIRGQIIDAFIVGLLV 244

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIE 288
             A  +A VP  + +G++T +  +IP   PI    + I          A  +  +   + 
Sbjct: 245 SLAMLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLI 304

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    L P L+   I +  L     ++ G    G +G+ I   + AL+   ++  I  
Sbjct: 305 QAIDGNILNPKLLSSAIHIHPLYVIVCVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAY 364

Query: 349 IKENKEKISS 358
            ++  EK   
Sbjct: 365 RQKQLEKSKE 374


>gi|87312143|ref|ZP_01094248.1| putative membrane protein-putative a permease [Blastopirellula
           marina DSM 3645]
 gi|87285171|gb|EAQ77100.1| putative membrane protein-putative a permease [Blastopirellula
           marina DSM 3645]
          Length = 358

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 109/341 (31%), Gaps = 20/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E      G +  +    +  ++ + +    P   A+ + +   PI    + +   S    
Sbjct: 14  ERSNLQTGALLILAAVAVSFAVAYARSILIPFTLAIFLNYLVAPIVDFSMVRLRFSKFAA 73

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A + V    +     +         + +S   +  Q    + R L  I    +A   
Sbjct: 74  VSLALLVVGLALVSMSFLVLLVI-----QSISDPQMLRQLEFDLQRKLDAIVIQGYALAD 128

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +   +    L    +KTN I  +P +A + G + +    S     I + F      
Sbjct: 129 SWLGVQFDRPDSELIIAAIKTNLISQMPSYAQQLGALLMSLVSSTALTTIFVGFMLAGRD 188

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                             K +   + + IR       +I+   G+++     + G+    
Sbjct: 189 PY-------------KVSKGMYAEIDQKIRRYIATKFMISAVTGILVWVCLAMMGMRLAS 235

Query: 243 ALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             G++  ++  IP    I      + + ++   +++    +          +   + P +
Sbjct: 236 LFGLMAFMLNFIPSVGSIIATLLPIPLAIVDFDSVWMIVLVIGVPGAIQMTLGNVIEPKI 295

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +G  ++L  +     L       G +G+ +   + A + ++
Sbjct: 296 MGDGLQLHPVTILLSLTFWGMLWGPVGMVLAVPITATLRIV 336


>gi|229541941|ref|ZP_04431001.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
 gi|229326361|gb|EEN92036.1| protein of unknown function UPF0118 [Bacillus coagulans 36D1]
          Length = 341

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 107/341 (31%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           ++   +G+ R +I  +I + LYFL+     +L   I  +    +                
Sbjct: 7   SLFQKRGVRRVLIFVLITLILYFLRSMMDLMLLTFIFSYLVNRLQKIVTRWFPIKRRLAV 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I  + ++    + ++  F   + E+ +LV ++                        +  
Sbjct: 67  LIVYILILGGLTLGVIKYFPILVNEITQLVMQISDFYTK-----------------PQHN 109

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                  ++++          G+  +  + +    + +   ++II  +  L    R    
Sbjct: 110 EVLNYIVKNIQEKKIVDYAQKGVSILFDYFTSISKVSIQVFMAIILSLFFLLEKERIIRF 169

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             Q   S     +    +                  IIA+   ++     W+ G P    
Sbjct: 170 TKQFKKSKLAAFYDEI-EYFGVKFVGTFGKVIEAQFIIAVVNSVLTTIGLWILGFPQLFG 228

Query: 244 LGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L ++   + +IP     IS   + I     G       + +   I   +    L P L+ 
Sbjct: 229 LAILVFALGLIPVAGVFISLIPLCIIAYSIGGGMKVLYVLILIVIVHAVEAYVLNPQLMS 288

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +P   TF  L+      G+ GL +G  ++     + +
Sbjct: 289 SKTNMPVFYTFLILIFCEHFFGVWGLILGIPIVMFFLDVLE 329


>gi|319934911|ref|ZP_08009356.1| hypothetical protein HMPREF9488_00187 [Coprobacillus sp. 29_1]
 gi|319810288|gb|EFW06650.1| hypothetical protein HMPREF9488_00187 [Coprobacillus sp. 29_1]
          Length = 393

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 96/332 (28%), Gaps = 10/332 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK-------KEESSTFLAVIATVSVMC 72
           +   + +L     P+  A+II F                   K            +  + 
Sbjct: 33  VFSVVGYLLSLATPLYIAIIIAFILNIPMRKIEHLYGKKIKKKGLKRGLSITTTLILAII 92

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE---LWTKHLSH 129
           L ++   F+       +  +++ +   +   + +           +A     +     + 
Sbjct: 93  LLVLFSSFIIPKLGESISLIITNIFNYSNRLVTLVNDALAQFNVNYAINYDSIQQALTNM 152

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +  +     L  N    +   +      F++   S I  +  L         + + + 
Sbjct: 153 DLNSFLSKSGDLLGNAGINLIFQSIGIFGTFINAITSFIMALYLLANKETHLRQLKKIVT 212

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
               +        I             G  +       ++ + + ++G+P    L  I  
Sbjct: 213 FFFGYKESLVIFDIGAEANHYFNGFVSGQLLECCILTSLMYAGFKISGMPFPELLAFIIG 272

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I +++P         +S  L++      A    L   I        + P +VGG + +  
Sbjct: 273 IASLVPMFGGFVGFGISFVLVLAVEPTQAIIFTLCFVIIQQFEANIIYPRVVGGAVGISG 332

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +     LV     +G  GL I    MALI  +
Sbjct: 333 VYVLLSLVIFGNLLGFFGLLIAVPSMALIYAV 364


>gi|108761836|ref|YP_631086.1| hypothetical protein MXAN_2875 [Myxococcus xanthus DK 1622]
 gi|108465716|gb|ABF90901.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 397

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 94/315 (29%), Gaps = 18/315 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +++ +   +L  +      +   L++     P+                 I  ++++ +
Sbjct: 24  VLLLILCWAALRAVYPVLTLLAVVLLLSIALSPLVRRLTQW-GLPRGAGVAIVALALLGM 82

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             V +  L    + +++ LV  +    +                  ++         +  
Sbjct: 83  MGVLVGSLVPMLIHQLQGLVQSMPAMLERL----------------AQSRWVEELSTRYG 126

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             +    L       +           L      I +++   F    G  + +       
Sbjct: 127 VEVQAEDLIRFEPTDVAGRLINVLSSTLGLVAGGITVVVLTVFSLLFGEDLYESTIQWVS 186

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  + +   + K + +   G  ++    G V  +   + GVP  + LG++  +M +
Sbjct: 187 PRRRPRVRLLMSRMRKAVANYLAGTLLVMTIGGTVAATIALIQGVPYFLPLGLMVMMMGV 246

Query: 254 IPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP    I     V +  L    + +A    +   +   I    L P +    IK+  L  
Sbjct: 247 IPYLGSIISAVLVGVITLAAVGLKDALIAVVVFIVYQQIESNVLGPMIQRRAIKMNPLLI 306

Query: 313 FFGLVGGVRTMGLLG 327
              ++ G    GL G
Sbjct: 307 SIVVLCGGALAGLPG 321


>gi|90417801|ref|ZP_01225713.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337473|gb|EAS51124.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 417

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/350 (9%), Positives = 114/350 (32%), Gaps = 19/350 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G++  + + ++  +L  +     P + +++I     P+ S    +      +L  +A + 
Sbjct: 37  GLLSIITLILVGWALQAMSSVVVPFIFSILIALVVAPVDSMVKRRMPRRFGWLGHVAAMG 96

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW------------------LS 111
           ++ + +   L   +     + E   +V    +   P+                      +
Sbjct: 97  LIIVILFVFLGGLWLSAQRISEAFPQVSQKIEELAPMISSGSSGNAEGAQGASTAGGETA 156

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
               G   +   +   S        +   L +   ++   +AS           +++ + 
Sbjct: 157 AGAAGSSGTSDSSDVYSSVTDQFRGAGGQLGSRIAEYASSYASSVLSSAGSALAAMVLIF 216

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                   +  +   ++ ++ +    +   +   ++ + +R   L   ++ +    +  +
Sbjct: 217 FFTLLMLIEAPNWRAKVCAVVDPDQRSGVFESLDVIARQLRRYLLIRVVLGLLTAGLYAA 276

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             W  GV   +   ++  ++  +P    +       +++ ++ +   A  + +   +   
Sbjct: 277 WLWFFGVDLLLVWAILAFLLNFVPTLGSLVAGALPVVHVYVQQDFRTAVIVGIGILVIEQ 336

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           I+   + P + G  + +  L     L+      G+ G  +   +   I V
Sbjct: 337 IMGNYVDPQVQGKQLSVSPLVILLVLLVWGWVWGVAGALLAVPVTIGIIV 386


>gi|186686308|ref|YP_001869504.1| hypothetical protein Npun_R6282 [Nostoc punctiforme PCC 73102]
 gi|186468760|gb|ACC84561.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 361

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 111/333 (33%), Gaps = 12/333 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + ++++ V   + +     +    I+ F        F   +    T   +I  ++ +
Sbjct: 19  IIALNVWLLSVLFRYFQHPITVLSIGAILAFLLNYPVKFFERARIT-RTQAVIIVLLATL 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            LF +  + L    + +  +L++K+                +           + L    
Sbjct: 78  TLFGILGVTLVPLIIDQTIQLLNKIPDWLGASQANLEQFEML--------AKQRRLPIDL 129

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +          N +  +   A  F    L     ++ +I+  F+    G  +   L +L
Sbjct: 130 RVVSSQINANIQNLVQQLASGAVGFAGTLLSGLFDVVLVIVLAFYMLLYGDRVWYGLINL 189

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      ++  +    ++ FL   ++ +   L L   + +  VP  +   ++  I 
Sbjct: 190 LPSNIGEP---LTASLRLNFQNFFLSQLLLGLFMMLTLTPIFLVMKVPFALLFAILIGIS 246

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP         +   L++  N + A  + +   +   + D  L P L+G  I L  + 
Sbjct: 247 ELIPFIGASLGIGLVTILVLLQNWWLAVQVAIAAILMQQLKDNLLAPRLLGNFIGLNPIW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            F  ++ G    GLLG  +   +   I   +  
Sbjct: 307 IFVAILMGFEIAGLLGTLVAVPIAGTIKGTFDA 339


>gi|56964203|ref|YP_175934.1| hypothetical protein ABC2438 [Bacillus clausii KSM-K16]
 gi|56910446|dbj|BAD64973.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
          Length = 362

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/351 (14%), Positives = 112/351 (31%), Gaps = 2/351 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAVIAT 67
           + I   +++    + +YF    F P+L AL+      P       K ++        I  
Sbjct: 7   KKIFLIVVIAAAGLFVYFNLSAFMPILLALLTAMVFEPFVKFLQKKMKQEKRLLPVTIVF 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +S + +  V L     Y +  +     ++             L                +
Sbjct: 67  LSFLFVSGVLLYITVRYLIESIYGWTLQLPQYAFEIQQFADKLISDFTDTLDRIPQGAAI 126

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    +           +    + +     +     +  II LF F  D   +   
Sbjct: 127 VAELQRLSETAVDTVLGFTATVITTIAAWLQSIPNLLFVTLVYIITLFLFSLDLPRLLSN 186

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             +L +       + + R + KV    +    I++IG  L    +       S + + ++
Sbjct: 187 TFNLFKDETSQKLQFVFRRMGKVFLGYWKAQFILSIGVFLACYISLLFIAPSSALIMSIL 246

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++ +IP    P         ++I           +  A+ L I+ + + P ++G  I 
Sbjct: 247 IWVVDIIPLYVGPALILVPWGLVVIILGNTAMGIQLMVLALVLLILRRIIEPKVLGDSIG 306

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L  LPT   +  G    G++GL  GP +   +    +  +  +   +E  +
Sbjct: 307 LNALPTVLSMYFGFVFFGVMGLIFGPFVYIAVRSAIEAGLFRLNAPEEPTA 357


>gi|237747158|ref|ZP_04577638.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
 gi|229378509|gb|EEO28600.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
          Length = 359

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 74/355 (20%), Positives = 139/355 (39%), Gaps = 13/355 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R        +   + +  + +       F A +  AL +     P++     K +   TF
Sbjct: 17  RSRNRIRLLLQLALTIGSVFLCYLMTLPFLASLAWALALAVLFMPLHRKICRKIK-RPTF 75

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A++ +   + + ++P+L +    +LE+    + ++   + G    R L  +P       
Sbjct: 76  SAILTSAIAIVIVVIPVLLITVRVVLEISRGSTLIMSKVESG-EWQRNLERMPYVGKVLL 134

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L  P          L  N   F+    + F        + I+     LFFF RD 
Sbjct: 135 WAENQLDIPS---------LIDNLTSFLTAQVTSFLRSSFIQVIVIVLTFYLLFFFLRDR 185

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I + +      L       + +++   IR+T  G   +A  +G + G  +W+ G+P+ 
Sbjct: 186 NQILRTIRRFSP-LCGCETNGLFKVISTTIRATVFGTIAVAAVQGSLAGFMFWMLGLPAP 244

Query: 242 VALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +  G I  I+++IP     I +   SIYL + GN+     L  WG   +  VD  L P L
Sbjct: 245 LLWGAIMTILSIIPLLGAYIIWLPASIYLALDGNLMYGLILAGWGMFVVGTVDNLLYPIL 304

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +   ++L  +  F  L GG+   G  G+ +GP+ +   A +         E+++ 
Sbjct: 305 ISKKLRLHTVVAFISLAGGILVFGAAGIVLGPITLTASAYLMHLWRSRTVESRKP 359


>gi|288817681|ref|YP_003432028.1| putative permease [Hydrogenobacter thermophilus TK-6]
 gi|288787080|dbj|BAI68827.1| putative permease [Hydrogenobacter thermophilus TK-6]
 gi|308751279|gb|ADO44762.1| protein of unknown function UPF0118 [Hydrogenobacter thermophilus
           TK-6]
          Length = 356

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 67/348 (19%), Positives = 138/348 (39%), Gaps = 8/348 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + +F   + L  L  F  P+L A+I    ++P++ S   +   ++T  A++ T+ V
Sbjct: 10  FLLGITVFFTFLVLVILTPFLKPILWAVIFSLVAYPLHLSLS-RLLRNNTLSALMVTLLV 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQH-----GIPVPRWLSDIPGGMWASELWTK 125
           +   ++P L +      +  E+   ++   Q+      +     L  +   +    L   
Sbjct: 69  LTFIVIPFLIIGLVAAKQSVEITKAIIQYLQNHTLTDVLHSLYSLPVVNKLITEEILQRV 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +          + T   +          +                +I+ FF  RDG    
Sbjct: 129 YEYMQSEEFKNTITSYLSKLTQKAGEIFTSMLFATGSVIFKSFVFLISFFFILRDGRRFV 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +               ++   + K I +   G   +A+ + ++   AY + G+   +   
Sbjct: 189 EFFARFLPM-HKEDLYEVLLTIYKTILAVVYGSIGVALVQAVLSFIAYTVVGINYSLLWA 247

Query: 246 VITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +IT I + +P  G    +  ++IY  +   +F    + LWG++ +  VD  LRP ++   
Sbjct: 248 LITFIASFVPPFGTGFVWVPIAIYTFLNKGLFYGIFMLLWGSLVISTVDNILRPLIMKKG 307

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           IK+P++  FF  VGG+ T G LGLF+GP++   +  +       I + 
Sbjct: 308 IKMPYIVLFFSTVGGLLTFGFLGLFLGPIVFTTLFSLAIIYERRILKE 355


>gi|300867990|ref|ZP_07112629.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300334011|emb|CBN57807.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 402

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 102/305 (33%), Gaps = 9/305 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
              + +  F  +L A ++ F        F     +     A++  ++ + + +   L LF
Sbjct: 46  IFGYFQSLFVILLVASLLSFLLNYPVRLFEQHGVQREQ-AAILVFLTALLILLALALTLF 104

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                + ++LV+++      G        D    +        +L    +          
Sbjct: 105 PLAFTQAQQLVARLPEWIDSGQRQLLIFDDRINALGLP----INLDGFIAQINTRLKGEL 160

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                          ++ +   L ++  ++  F+       I + L       F   + +
Sbjct: 161 QLVAGRALNITLNLTVLTVVRLLDLLLTVVLTFYLLLHSSDIWESLIEWLPPRFQKPFSE 220

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R+     ++ F G  IIA      L SA+    VP  +  G+   +MA++P G  +  
Sbjct: 221 TLRL---SFQNYFTGQLIIATCMAFGLTSAFIFLKVPFGLLFGLTIGLMALVPFGGSV-G 276

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L+   NI     +     I   IV+  + P ++G    L     F  ++ G R 
Sbjct: 277 IGLVTILVALQNIGLGLQVLAVELIVQQIVENLIAPRVLGSVTGLNPFWVFVSILTGARV 336

Query: 323 MGLLG 327
            G LG
Sbjct: 337 GGFLG 341


>gi|239980705|ref|ZP_04703229.1| integral membrane protein [Streptomyces albus J1074]
          Length = 359

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/340 (14%), Positives = 104/340 (30%), Gaps = 19/340 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   + ++ +      +    PVL AL+      P++   + +     +  A +   +V
Sbjct: 17  LLVTGVAWVAVWLCVLFRAAVIPVLLALLGTALLTPLHRRLL-RMRVQRSLAAGLTCAAV 75

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +       +    +    ++V+   LA Q                             
Sbjct: 76  LVVVGGATYIVVLALVDSGDQIVASAKLAAQDVAGFL-----------------GADEAS 118

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 +   L                 +        +  ++ +FFF RDG  +   L +
Sbjct: 119 LDDLASNARELFDRFGGPAASGVISGLGLVAQAGAMGVLAVLLVFFFIRDGDRVVGSLRT 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +         + I R   + +     G T+IA+ +G++      L GVP    LG +  I
Sbjct: 179 MAPGHVGEITEAIGRRAYRAVEGFMRGTTMIALIDGVLTTIGLLLLGVPGAAGLGALVFI 238

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            A IP     +S     +  L    +  A    L   +   +    L+P +    +++  
Sbjct: 239 GAYIPYLGAFVSGVLAVLVALADRGVVIAAWTLLVIFLVQMLEGNVLQPVIQSRTVQMHP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                 +  G    G++G+ +     A    I  E     
Sbjct: 299 AVVLVAITAGATVGGVIGVLLAVPATAAAFGIVAELRERY 338


>gi|29346881|ref|NP_810384.1| hypothetical protein BT_1471 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338779|gb|AAO76578.1| putative transmembrane protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 341

 Score =  100 bits (248), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 63/351 (17%), Positives = 138/351 (39%), Gaps = 20/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL I        +    K +   +  A++ T 
Sbjct: 9   KYSLIVIILFMGIIIFRQITPFLGGLLGALTIYILVRTQMTHLTEKWKLKRSVAALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F+VPL    +  + +++++             V  ++ +  G             
Sbjct: 69  ETVMVFLVPLGLTIWLLVNQLQDINLDPQTFIAPMQQVAEFIKEKTGYDVL--------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +  +  +PR             +++  M+  L+F    G  +   +
Sbjct: 120 ---------GKDTLSFIVSILPRIGQIIMESISSLAINLFVMVFVLYFMLIGGKKMEAYV 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +      A  +++   +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +T
Sbjct: 171 NDILP-FNEANTQEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNVLVLGFLT 229

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  V+ YL + G+ FNA  L  +G I +   D  +R  L       
Sbjct: 230 CFATIIPMVGTALIWFPVAAYLAVTGDWFNAIGLAAYGGIVISQSDNLIRFILQKKMADT 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             L T FG+V G+   G +G+  GP+L++L  +          + +  + +
Sbjct: 290 HPLITIFGVVIGLPLFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPA 340


>gi|160891098|ref|ZP_02072101.1| hypothetical protein BACUNI_03545 [Bacteroides uniformis ATCC 8492]
 gi|270294399|ref|ZP_06200601.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481005|ref|ZP_07940085.1| hypothetical protein HMPREF1007_03204 [Bacteroides sp. 4_1_36]
 gi|156859319|gb|EDO52750.1| hypothetical protein BACUNI_03545 [Bacteroides uniformis ATCC 8492]
 gi|270275866|gb|EFA21726.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902898|gb|EFV24772.1| hypothetical protein HMPREF1007_03204 [Bacteroides sp. 4_1_36]
          Length = 340

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 132/336 (39%), Gaps = 20/336 (5%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              +  F   +L AL I             K++   +  A + T   +  F+VPL  + +
Sbjct: 24  FRQIAPFMGGLLGALTIYILVRKQMMYLSDKRKMKRSIAATLITAEAILCFLVPLGLVVW 83

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             ++ ++                   ++  P  + A      ++   ++   +       
Sbjct: 84  LAVVNLQN------------------INLDPQAIIAPFEEAANIIKAKTGYYILGKDTVA 125

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +PR           + ++I  ++  L+F    G  + Q ++ L         + +
Sbjct: 126 YVISILPRIGQAIMGGISSFAVNIFVLVFVLYFMLIGGKKMEQYVNDLLPF-NDDNTQNV 184

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISF 262
              +  ++RS  +G+ ++A+ +G V    YW+ G P+ +  G +T   ++IP     + +
Sbjct: 185 IHEINMIVRSNAIGIPLLAVIQGGVAMIGYWIFGAPNILFAGFLTCFASIIPMVGTALVW 244

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +++Y+ + GN   A  L ++G   +  +D  +R  +      +  L T FG+V G+  
Sbjct: 245 FPIAVYMALIGNWVQAIGLAIYGGAVISQLDNLIRFIIQKKMADIHPLITVFGVVIGLSL 304

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            G +G+  GP+L++L  +          + + K + 
Sbjct: 305 FGFMGVIFGPLLLSLFFLFVDMFKRGYLDARGKTTE 340


>gi|296284263|ref|ZP_06862261.1| permease [Citromicrobium bathyomarinum JL354]
          Length = 388

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/352 (11%), Positives = 104/352 (29%), Gaps = 24/352 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +  +++Y  +     + +AL+                    T   V+  +
Sbjct: 48  KAMVWVGVIGLAALAVYISQSLLV-IFAALVFASMIDGGARLIGRYLPIPRTLRIVMVLL 106

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +    F       +   L + V       I + +          A  +  + +S
Sbjct: 107 LAIAFLVWLGYFAGSQIAEQAATLPAIVEKQLNEIIALAQQNGMQVSLSDAQSMANQVVS 166

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                    +R          +   ++I   +   +     + +
Sbjct: 167 G--------------------VGTVTRAIGGIAGIIGTTAIILIIGIYVALEPNLYERGV 206

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +      +  +K    +   +R    G  +  + EG     A  + GVP    LG++T
Sbjct: 207 EWMAPRGERSELRKTLAEMALTLRRLMAGRIVGMVFEGFFTWVALEMFGVPMAALLGILT 266

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++A IP    +    +   +    ++           +        + P +    + LP
Sbjct: 267 GLLAFIPNIGAVVSGLLMATVGFSVSVETGLAAVAIYFVVQTFDGYVVIPMIARKTVDLP 326

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
                   +      G++GL +   L+A++ V     +   + N+    S +
Sbjct: 327 PALVLGAQLIMGLLFGIIGLLLADPLLAMLKVAL---VRRSEANQAAQDSEY 375


>gi|300710665|ref|YP_003736479.1| hypothetical protein HacjB3_06480 [Halalkalicoccus jeotgali B3]
 gi|299124348|gb|ADJ14687.1| hypothetical protein HacjB3_06480 [Halalkalicoccus jeotgali B3]
          Length = 325

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 67/335 (20%), Positives = 134/335 (40%), Gaps = 18/335 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +I     +SL  +  F   VL A++I +   P+Y   +       T  A+    +  
Sbjct: 1   MLVVIGAFGTLSLAIVWPFRQYVLLAVLIAYLLTPVYRRLVPVTG--ETGGALALMGAAT 58

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+P   L      +  +L  ++  ++     V   ++                +  +
Sbjct: 59  GVVILPFAALLSVVASDALDLAQRLSDSDIDLEEVESVIA--------------ASTGRE 104

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +      N    +   AS    +F    + I      LFFF RDG   ++ L  +
Sbjct: 105 VDLSTTLGTAGENFAGVLVGNASDLVGVFTHALIGITLSAFLLFFFLRDGRYFTEWLFEV 164

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L      +++  V  ++ +  +G  +++  +GL+ G    + G+P+ V   V   ++
Sbjct: 165 TP-LPDVVLGELATNVDDLMWAVLVGHVLVSAIQGLLAGIGLAVTGIPNAVFWTVAMMLL 223

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A++P     + +   ++YL+  G+      LFL+G   + + D  LR  LV    +L   
Sbjct: 224 ALLPVVGAFLVWGPAAVYLVALGDPVAGGGLFLYGMTVVGLSDNYLRSILVDRRAQLNPA 283

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               G+VGG+  +G++GLF GPV++    +  +  
Sbjct: 284 TIMLGVVGGLYLLGVMGLFFGPVIVGSFKIAIETF 318


>gi|170768767|ref|ZP_02903220.1| inner membrane protein YdgG [Escherichia albertii TW07627]
 gi|170122315|gb|EDS91246.1| inner membrane protein YdgG [Escherichia albertii TW07627]
          Length = 360

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 104/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 28  KIVIMLGMLVIILCGIRFAADIIVPFILALFIAVILNPLVQRMVRWRVPR-----VLAVS 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +  +    +   
Sbjct: 83  ILMAIIVMAMVLLLAYLGSTLNELTRTLPQYRNSIMTPLQALEQLLQRVGIAISVDQLAR 142

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +   L              
Sbjct: 143 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKLQQMMA--------- 193

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 194 -------RPIEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLASLDVRFAFVWGLLA 246

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 247 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 306

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 307 STLVVFLSLIFLGWLLGPVGMLLSVPLTIIVKIALEQ 343


>gi|254517606|ref|ZP_05129662.1| sporulation integral membrane protein YtvI [Clostridium sp.
           7_2_43FAA]
 gi|226911355|gb|EEH96556.1| sporulation integral membrane protein YtvI [Clostridium sp.
           7_2_43FAA]
          Length = 357

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 115/336 (34%), Gaps = 3/336 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +   ++  II +++ +  G+F P +    I F   P+ +S   K   +   +A I  +
Sbjct: 12  NTLYLLIVATIIYIAIKYGLGWFLPFVIGFGIAFILKPLINSISKKFGLNRKVVAGITVL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                    +  L     +E+K++  K+       I                +L    + 
Sbjct: 72  IFYTTVGALITVLIVKLFVELKDVFIKLPNLYTTTIEPVILQLSSGFEDILIKLDPTLMQ 131

Query: 129 HPQSLKILSETFLKTNGIDFIPR---FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             + +       L +           F S        + + +IF IIA FFF  D  +I+
Sbjct: 132 AIRDMISSLTESLGSIISSISSGVVVFISSTVTTVPTFFIIVIFSIIASFFFAMDYTNIT 191

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +         +    +   +   +       +II     + L     +  V S + + 
Sbjct: 192 TFITRQFSERASSIIFDVKDYIVGTLFKFIKAYSIIISVTFIELAIGLSILRVESAITIA 251

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A + ++P           I + +               + + IV   L P +VG  I
Sbjct: 252 LLIACVDVLPVLGTGGIVIPWIIIELIRGDIGLAVGLTIIYVVITIVRNVLEPKVVGQQI 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  +     +  GV+  G LGLF+ P+++ ++  +
Sbjct: 312 GLHPIVMLMCMFIGVKIFGFLGLFVLPIIVIILKNL 347


>gi|300775462|ref|ZP_07085324.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
 gi|300506202|gb|EFK37338.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
          Length = 359

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 64/352 (18%), Positives = 139/352 (39%), Gaps = 20/352 (5%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             Q  +  +I+ +  +  + L  F   VL A+ I             +K+   +  A   
Sbjct: 13  IKQVSLLAIILVLTGLICFNLALFIPSVLGAITIYVVCRKYNFYLQEEKKWKPSLAAFAL 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
             + + + I+P+ F+    + ++    + +   N     +  ++ D  G    S+     
Sbjct: 73  MFASLIVLILPIYFIADLIIDKLGNAQAYMAKFNIFLDKIHTYIFDKVGFDILSKENM-- 130

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                           T   D + + ++       +    ++ M   L +F  +   + +
Sbjct: 131 ----------------TKLKDSVGKISTSALSGTFNTLTVVMSMYFIL-YFMLEKPRLFE 173

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           ++ S    L  A    I   + K+I +  +G+ ++A+G+G+V    Y + G P  V L  
Sbjct: 174 RILSNAAPLKRANISLIGDKMRKLIMANAIGIPVVAVGQGIVSLIGYIIFGAPGPVLLFA 233

Query: 247 ITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +TA  ++IP     I +  V I+++ +GN      L  +  + + + D  LR  L+    
Sbjct: 234 LTAASSVIPVVGTAIVYVPVCIFMIAEGNTGPGLGLAAYCVVVVGLTDNLLRFTLLKKLE 293

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +  L T FG++ G+   G +GL  GP+L++L  ++ +       + +    
Sbjct: 294 NIHPLNTVFGIIMGMNLFGFMGLIFGPILISLTLLLIQVYRNEFSDEETPPD 345


>gi|118497190|ref|YP_898240.1| hypothetical protein FTN_0591 [Francisella tularensis subsp.
           novicida U112]
 gi|118423096|gb|ABK89486.1| conserved hypothetical membrane protein [Francisella novicida U112]
          Length = 346

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 122/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 75  FIPLLVVISYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 135 KDIIISNLGKILPTIRYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLKDF-- 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 193 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|251798577|ref|YP_003013308.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           JDR-2]
 gi|247546203|gb|ACT03222.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           JDR-2]
          Length = 343

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 48/332 (14%), Positives = 118/332 (35%), Gaps = 2/332 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +++   L  LY L    AP L AL++     P+    I + + +    + I++  
Sbjct: 2   SIKTLVMVAFGLFLLYLLFTVGAPFLLALVVAIFLEPLTQFLIRRLKTNRLVASTISSSL 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I  +  L    + E+     KV             L +    ++A+         
Sbjct: 62  FTVILIGLMALLGVKVVAELIAFAQKVPNYVGDASTYVTDLVENARSLYANFSPDTVGQI 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L  +S++   T  +  +      F        +  I  ++A++ F     ++     
Sbjct: 122 ENWLTDMSKS--LTGMVGSLSSSVISFASGIPSMFIFFIVFLVAVYMFGFSLNTMKDTFL 179

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L E        ++   + K I        I++    ++      +  +   +A+ ++  
Sbjct: 180 TLFEEKSRPQVNEVLDNLKKSIFGFLRSQIILSALTYILSLIGLIILDIKYPLAIALLIV 239

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ ++P     +        L+      A        + + +  + + P ++G  + +  
Sbjct: 240 IVDIMPILGTGTVLVPWGTYLVITGDLYAGIGLYILFLFMTVFRRIVEPKILGDSVGIGS 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     L  G + +G++G+F+GP+++ +   I
Sbjct: 300 LSALISLYVGFKLVGVIGVFLGPLVVIIYMAI 331


>gi|254368119|ref|ZP_04984139.1| hypothetical protein FTHG_01453 [Francisella tularensis subsp.
           holarctica 257]
 gi|254369723|ref|ZP_04985733.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|134253929|gb|EBA53023.1| hypothetical protein FTHG_01453 [Francisella tularensis subsp.
           holarctica 257]
 gi|157122682|gb|EDO66811.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 346

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 123/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 135 KDMIISNLGKILPTIRYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILKDF-- 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 193 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +   +  A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGVTKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|227872610|ref|ZP_03990945.1| sporulation integral membrane protein YtvI [Oribacterium sinus
           F0268]
 gi|227841550|gb|EEJ51845.1| sporulation integral membrane protein YtvI [Oribacterium sinus
           F0268]
          Length = 360

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/307 (15%), Positives = 106/307 (34%), Gaps = 2/307 (0%)

Query: 37  ALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
             II F   P+ S             ++++ T+++  LF      L   G+  +K+ +S+
Sbjct: 24  GAIIAFCLNPLISFLQKSFPFLKKKQISLVLTLTIFALFFYLCFCLMQLGLPMLKQRISR 83

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           + L  Q        + +     +        LS            +         +F+ +
Sbjct: 84  LPLEIQDLKRQLEKMIEE-NLPYFPPFIQNLLSDLPGTLDSLGRTMMNKWTSPALQFSLQ 142

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                 +  L +I  I++   F ++G  +   L       F  Y + +     K+++   
Sbjct: 143 VVSGLPELFLYLIITILSALCFSQEGAKLLSILHRNIPEQFRKYMQLLKEDGKKILKGYV 202

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
                I     ++L   + L  V   + L  +TA +  +P           + L++    
Sbjct: 203 WAQIQIMFCVFILLSVGFSLLRVELAIPLAFLTAFLDALPVFGVGFIMWPWMALILLKGK 262

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
           F      L   I   ++ + L+P ++G  + LP L     L  G +  G+ G+ +   + 
Sbjct: 263 FLFFLALLLIYILSQMIRQILQPKIIGDAVGLPPLLALIFLFLGYKLYGISGMVLALPVG 322

Query: 336 ALIAVIW 342
            L+   +
Sbjct: 323 MLLVRFY 329


>gi|187932032|ref|YP_001892017.1| hypothetical protein FTM_1403 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712941|gb|ACD31238.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 346

 Score = 99.7 bits (247), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 122/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 135 KDMIISNLGKILPTIRYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILKDF-- 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 193 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|257457925|ref|ZP_05623084.1| putative membrane protein [Treponema vincentii ATCC 35580]
 gi|257444638|gb|EEV19722.1| putative membrane protein [Treponema vincentii ATCC 35580]
          Length = 362

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/363 (15%), Positives = 133/363 (36%), Gaps = 9/363 (2%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-------IS 53
           M++++         ++   + +       + + +L + I+     P+Y            
Sbjct: 1   MQKSLKFQTVSFFIILAITVTLVARVFLPYASVLLWSAILYIMFGPLYHKLITKLNPESR 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
             +     +A I +  ++ L    + F     + + +  V KV+        +     D 
Sbjct: 61  WFKARQKIIAAIFSAGIIILVAGIMFFFLIKLIGQGQMFVKKVMNFFITHPHLLTMEKDS 120

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
           P      ++    +                   D I R+A+       ++ LS++FM  A
Sbjct: 121 PLNELVMQISMGTIDLSSFDLKKELMNFFLQYADTIIRYATGIAKNIGNFVLSLLFMCFA 180

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L+F + DG  +     +          +K++  +   I + F+G  +++I +       Y
Sbjct: 181 LYFLFIDGQYLGSVFVTAIPIQVSE-GQKLAAKIKDTITNLFMGYFLVSICQFAAAFIVY 239

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +  V   + L  +T   + +P     + +  + + +L+   +             +  +
Sbjct: 240 TIFRVEGALLLSFLTFFSSFLPFFGCALVWLPLGVEILLTAGLLKGILFLCVAGFFISSI 299

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  LRP  +   I++  L  FF ++GG+R   L G+ +GP+ + L+  +   +  +   +
Sbjct: 300 DNFLRPMFLQNRIQIHPLLIFFSILGGIRFFKLNGIVLGPMFVILLFTLIDIARTSDSTD 359

Query: 353 KEK 355
            E+
Sbjct: 360 IEE 362


>gi|297583924|ref|YP_003699704.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
 gi|297142381|gb|ADH99138.1| sporulation integral membrane protein YtvI [Bacillus
           selenitireducens MLS10]
          Length = 355

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 109/335 (32%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + I   +++ +I +  YF+     P+L+AL+      P  +      + S      I
Sbjct: 8   IIKKYISIALVIVVIGLLFYFVLPVATPILTALVTALFLTPAVNGLTKYTKLSRQLSVFI 67

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +S +         LF   + ++ +  + +             + D     +       
Sbjct: 68  VFISFLAALSAFSYILFTRALTQLNQFFNNLPSIINDINIAWINILDNLRIQFDQYSQDI 127

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 ++               I   A+        Y +S +  +IAL+ F  D   + 
Sbjct: 128 VNEIDIAVTNALFGLRDQLQDINIIETATNLLTAIPSYIVSFLVFLIALYLFLIDLPRLK 187

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++ +          + +S  +  VI   F    +++I   +V      +      + + 
Sbjct: 188 TKIFTYLSEDTAEKVRFMSARLSYVIFGFFKAQFLVSIIIFIVTLIGLLIVAPEVALIMS 247

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +    +  IP    I+  A      +           L  A  L  + +T+ P ++G  I
Sbjct: 248 IFIWAIDFIPIIGSIAVLAPWAGYQLIAGDTFMAIQLLVLAGILLTIRRTVEPKVMGHHI 307

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  L T   L  G+  +G +G  +GP+ +     
Sbjct: 308 GLSPLATLISLYIGLMLLGAIGFILGPLAVIFFQS 342


>gi|115315228|ref|YP_763951.1| hypothetical protein FTH_1508 [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115130127|gb|ABI83314.1| conserved hypothetical protein [Francisella tularensis subsp.
           holarctica OSU18]
          Length = 346

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 122/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 135 KDMIISNLGKILPTIRYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILKDF-- 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L +   A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 193 ---HDSDSFISAAIATTRRVSLAIFFTAMLVGTMMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +   +  A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFIVGIIYILIGASVFVIYGVTKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|45358583|ref|NP_988140.1| hypothetical protein MMP1020 [Methanococcus maripaludis S2]
 gi|44921341|emb|CAF30576.1| Protein of unknown function UPF0118 [Methanococcus maripaludis S2]
          Length = 334

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 126/334 (37%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R  ++F     +Y L  F   +  A+ + + + P+Y     K     T+ A+I  + 
Sbjct: 8   ILSRLFMVFSFFALIYMLWPFMGIIALAVAVAYMTKPLYDILKPKFG--RTYGAIICLLG 65

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   ++ ++ +    +  +  L   +        P+   +  +             +  
Sbjct: 66  IVIPSLLLVVLVAEDVVTFLLSL--DIENIITKVTPILNDIGYLRVDGPDVSKPFSDIW- 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         +    +    +          + ++F+    F+F +DG  ++    
Sbjct: 123 --------------SVSKPLLNSFASQISSIPSLLMKLLFLSFMTFYFLKDGDKLTDSFL 168

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                            + K +++ F+G  + ++  G++    YWL G+P+ + LG ++ 
Sbjct: 169 IYVPEDKKRNTALFLSEIHKALKTLFIGNAVTSVIVGIISIIGYWLIGIPNPITLGALSG 228

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKL 307
           I+ ++P     +    +++Y L+ G I     L L+G I L +  D  +RP ++     L
Sbjct: 229 ILNILPVVGGWTIYVPLTVYYLLTGEIAKGILLGLFGIIFLSLAPDFAIRPRVISKDGDL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                    + G    G+ GL IGP+++A +  I
Sbjct: 289 HPALVLIAFLIGPLVFGIPGLAIGPIIVATVYAI 322


>gi|120437128|ref|YP_862814.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
 gi|117579278|emb|CAL67747.1| membrane protein, UPF0118 [Gramella forsetii KT0803]
          Length = 339

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 121/322 (37%), Gaps = 21/322 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            + + VL A+ +           +++        A +         ++P+  +      +
Sbjct: 31  PYLSGVLGAVTLYVILKSWMKKLVNR-GWRPPLAASLLMAGSFVGILIPVTLIAIMLTSK 89

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + + V+      +        +    G                    +S +   ++  ++
Sbjct: 90  IGKAVANSERVLKALKDQLNNIEAEIG------------------FSISSSIDTSSITNW 131

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +            +  ++I  M   L++   +  S+   + +    L     + I     
Sbjct: 132 VSSNLQNLAGGTFNAFIAIGIMYFMLYYMLTNRESLRDSMITYIP-LGKDNLRIIGEESN 190

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT-AVSI 267
           ++++S  LG+ ++A+ +G++    + + GVP      VITAI +MIP            I
Sbjct: 191 QLVKSNALGIPLVALVQGIIALIGFLIFGVPDPFFWFVITAIGSMIPFIGTAIGILPACI 250

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L  +GN F A  L ++G + +   D  +R +++     +  L T FG++ GV   G +G
Sbjct: 251 LLFAQGNDFQAISLLIYGFVVVGSTDNIIRLYVLEKLASVHPLITLFGVIVGVPLFGFIG 310

Query: 328 LFIGPVLMALIAVIWKESIMAI 349
           L  GP+L++L  +I K      
Sbjct: 311 LIFGPLLVSLFLLILKIYKKEY 332


>gi|284037625|ref|YP_003387555.1| hypothetical protein Slin_2741 [Spirosoma linguale DSM 74]
 gi|283816918|gb|ADB38756.1| protein of unknown function UPF0118 [Spirosoma linguale DSM 74]
          Length = 355

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 60/339 (17%), Positives = 132/339 (38%), Gaps = 20/339 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
               +Y L G+ +  L A I+     P +++   K+  + + +  +  +  + + I+P L
Sbjct: 22  AGFIIYGLSGYISAFLGAGILYVVFRPWFTALAIKRHWNKSLVTTLLIIFSIVVIIMPFL 81

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    +  +                  ++ S     +       + L+  Q     +  
Sbjct: 82  TLSLLLIDRI------------------QYYSQHTEDILNLAKKAEELTGYQITSQENIQ 123

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L   G  +  R         LD+ + +  M   ++F +         L           
Sbjct: 124 NLLRQGGSYASRLLPSLAGGALDFIVILGLMFFTMYFMFVQQEGFQAGLQKYLPFK-KDT 182

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA- 258
            K++   +   + +  +G  ++++ +G++ G+  W+ GVP  +  G +   MA IP    
Sbjct: 183 QKELGESLKNNVNANVIGQALVSLVQGVLTGATLWIFGVPDALFWGTVAFFMAFIPVLGT 242

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           P+ +    +  L +GN      + + G + +  +D  LR  L      +  L T  G+V 
Sbjct: 243 PLVWGPAGLIQLSQGNTSQGIGILVVGVVVIINIDNLLRIMLAKRMGDIHPLVTLAGIVL 302

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           GV   G+LGL +GP+L++   V+ +      K+ +++++
Sbjct: 303 GVPIFGILGLVVGPLLLSYFIVLMQVFERQNKQQEKEVA 341


>gi|251782288|ref|YP_002996590.1| hypothetical protein SDEG_0877 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390917|dbj|BAH81376.1| hypothetical protein SDEG_0877 [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127187|gb|ADX24484.1| hypothetical protein SDE12394_04950 [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 375

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 103/324 (31%), Gaps = 13/324 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P L      +    + S++               +       ++A ++   L    +  
Sbjct: 40  LPFLYGAAGAYIVNIVMSAYEKAYVYAFKGSPLVLKVKRGICMLLAYLTFFILITWIISI 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L      + +  +        +   +       K      S        
Sbjct: 100 VIPDLIASISTLTKFDTPSIKEVVNQLEHNKLLARVIKYIGGDAKLTQTITSYSQQLLKQ 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                 + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 160 FIGVLTN-ILTSVTVIASAIINLFISFVFSLYVLANKESLCRQGNTLVDTYTG-KYAQRI 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++       F+  T+ A+  G +  +  +L  +P    +GV+ A  A+IP     
Sbjct: 218 HYLVDLLHHRFHGFFVSQTLEAMILGTLTTTGMFLLQLPFAGTIGVLVAFTALIPVVGAS 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 278 IGAAIGFVLIMTQSMSQAIVFIVFLIILQQIEGNFIYPRVVGGSIGLPAMWVLMAITIGA 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
              G++G+ I   L A +  + K+
Sbjct: 338 SLRGIVGMIIAVPLAATLYQVIKD 361


>gi|75908944|ref|YP_323240.1| hypothetical protein Ava_2732 [Anabaena variabilis ATCC 29413]
 gi|75702669|gb|ABA22345.1| Protein of unknown function UPF0118 [Anabaena variabilis ATCC
           29413]
          Length = 345

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 117/345 (33%), Gaps = 21/345 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
             LN   ++R++++     +    L + +        A I+ F           ++    
Sbjct: 11  HRLNNLALVRFLLLVAAGWAIVQLLAYFETVIVIFTFAAILAFLLSYPVQWL--RRFLPH 68

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               V+  +  + +    L+ +    + + ++L+  +       +P    +  +      
Sbjct: 69  NIAVVVIFLISIVILGGLLITVGIAILSQGQQLIDSISAFLTSLLPFLERVEGLLRNRNL 128

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               +      ++  + +          F+  F +   +  + +            F   
Sbjct: 129 QIDLSVIQEQLRTQAVSTLVTSLAIVQQFLTNFVTFILIAVVAF------------FMLL 176

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  +      +        +  I   + +     F G  ++ +         + L  VP
Sbjct: 177 DGEKLWNFTLKIIPQKRRIRFTNI---MRRSFLGFFRGQLLLCLFLTSSTFIIFLLLQVP 233

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             + L VI  I+ +IPG            +++  +++ A  + +   +   I D  + P 
Sbjct: 234 FALILSVIVGILDIIPGIGATLGVGTITLIVLSQDVWLALKVLVACVVLQQIQDNLISPR 293

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           ++ G + L  +  FF L+ G R  GLLG+FI   +  +I  +++ 
Sbjct: 294 IMQGALNLNPVVVFFALLVGARVAGLLGVFISIPITGVIVSLFEI 338


>gi|300772600|ref|ZP_07082470.1| permease [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760903|gb|EFK57729.1| permease [Sphingobacterium spiritivorum ATCC 33861]
          Length = 353

 Score = 99.7 bits (247), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 118/345 (34%), Gaps = 17/345 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           MR+ +  P  I    I+  I++  Y  +       P++  ++      P+ +    K   
Sbjct: 1   MRKFISLPFYIKLACILISIVILGYLARIGDTIIVPLILGILFAMLLTPMSTLLEKKLRF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T   ++  V         L  L     +  ++  +           V  W++   G  
Sbjct: 61  PRTLAGIVCIVLFFGGLATGLYLLASQLSMLQEDWPAFKHQILDGVEVVQDWVNHQFGIQ 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           +             + ++       +  +D          M      + ++F  +  FF 
Sbjct: 121 Y-------------NEQMNLLNKTASKSVDSGTLILGTALMSLSSIAIFLVFTFLYTFFI 167

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                 I + L  L          +I   V  V++   +G+ +  +    ++  A  + G
Sbjct: 168 LIYRGHIVRFLLYLNAKEDHPVVLEIVAEVQYVVKRYLIGLLLQMLIVTTLVYIALAIIG 227

Query: 238 VPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   + L +IT +  ++P     S    V++         +   +F+  +I   I    +
Sbjct: 228 VKYSLLLAIITGVFNVLPYIGIFSSMFIVALITFATSTFSHVLFVFVAMSIIHMIDSNVI 287

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            P +VG  +K+  L     +V G    G+ G+F+   L+A++ ++
Sbjct: 288 VPKVVGSKVKINSLFAMMAIVCGELIWGISGMFLAIPLLAIVKIV 332


>gi|114777480|ref|ZP_01452477.1| hypothetical protein SPV1_14309 [Mariprofundus ferrooxydans PV-1]
 gi|114552262|gb|EAU54764.1| hypothetical protein SPV1_14309 [Mariprofundus ferrooxydans PV-1]
          Length = 370

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 116/354 (32%), Gaps = 14/354 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    L    ++  +++  + ++          +L A ++    +P  S  I +   S T
Sbjct: 7   MLSHPLLQASVIFSVLVTALALTASLFYPLLFTLLVATLLYAAMFPTTSYLIRR-GVSPT 65

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V+    ++   ++    L+     ++ +L ++    +     +   ++    G    
Sbjct: 66  QAVVMVMTVIVTFVLLMGALLYPLIAAQLDQLSTRTGSIDVRLTRLLLQVNTFTTGYLDI 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                           +   L  +    +    +     F D   S+  + +  FF  RD
Sbjct: 126 SFNP----------AETAAQLVNSVTHSLDTMQATVTSYFDDVAFSLFLVPLITFFLLRD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             S+  Q   L  + +      I       + +   G+TI  +   L+  + +WLAG+  
Sbjct: 176 FRSLRNQAMQLLPNRYFELGWMIYNATSSQLHAYLRGITIQMVCITLICTAGFWLAGIDF 235

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLR 297
              LG++T ++ +IP           + ++    K ++ +             +    + 
Sbjct: 236 APLLGILTGLLNLIPIFGIALAKIPPVLVVLLSDKPDLTSMILALAVVFAAQLVDTAYIL 295

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           P ++     L  +     +       G  GL     L+    VI+ E    +++
Sbjct: 296 PRVIAKSANLHPVTVMLSVSLAGYYFGFTGLIATVPLLFSGKVIFSELFSGLRD 349


>gi|149915828|ref|ZP_01904352.1| hypothetical protein RAZWK3B_07109 [Roseobacter sp. AzwK-3b]
 gi|149810151|gb|EDM69997.1| hypothetical protein RAZWK3B_07109 [Roseobacter sp. AzwK-3b]
          Length = 381

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 115/341 (33%), Gaps = 21/341 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                   +  +   ++L  L   +     +  A+I+   +  +      ++        
Sbjct: 21  HARVRTTALVIIAFAVVLFMLVQARFLLISLAVAIILFALTSDVIRFIARQRIGRFGVPN 80

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +A+++ + L    LL L    + ++  ++   V   +        L    G    + ++
Sbjct: 81  WLASIAALVLISTALLVLSSILLAQLNTVLVTTVSYAERAPSAVASLFGWMGEDVETAVF 140

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               S                    I  +         +     + +I+ + F + +   
Sbjct: 141 NSLRSVE------------------ISGYVRTVAGQAGNLMQGTVLVILFVGFLFAERIW 182

Query: 184 ISQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              ++ +  E    A    KI   +   +    L  T++++  G ++     + G+   +
Sbjct: 183 FDTKMTNFFEDEGQAARATKIITSIIHRVNYYLLVKTVVSLITGAMIYVVAQVFGIELAL 242

Query: 243 ALGVITAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           ALG++T I+  IP    I  +     +  +  G+      LFL      FI    + P++
Sbjct: 243 ALGILTFILNYIPNIGSIVATGMVALVGYVETGDAQTTGALFLITGAIQFINGNVIDPWM 302

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +G  ++L        L       G+ G+F+   +M ++ V+
Sbjct: 303 MGRALRLSSFGIIMSLAFWGAVWGIPGMFLSVPIMVMLLVV 343


>gi|270261329|ref|ZP_06189602.1| putative transport protein [Serratia odorifera 4Rx13]
 gi|270044813|gb|EFA17904.1| putative transport protein [Serratia odorifera 4Rx13]
          Length = 350

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 119/347 (34%), Gaps = 25/347 (7%)

Query: 1   MRETMLNPQGI---MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M  T+L  + +   +   ++ IIL  +        P + A+ +     P+ +     +  
Sbjct: 1   MGRTLLTDRSLRLAIMLAMLVIILAGIKAAADIMVPFMLAVFLAMVLNPLVAQLERWRIP 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
               ++++    V+ L +   +                    N+    +P++   +   +
Sbjct: 61  RVLGVSLLVVAVVVVLMLFIGMLGA---------------SLNELARSLPQYRGMMMEKL 105

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + +    +   S   + +    +  ++ + R  S       +  L ++ ++  LF  
Sbjct: 106 RELQHYADRFNITLSTVAMLQYVDPSAAMNLVTRLLSHLSGAMTNIFLLLMTVVFMLFEV 165

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
               + + Q LD       P+      +   + +    +  T I++  G+++       G
Sbjct: 166 QLLPYKLQQALDK------PSEGIANIQRALEGVTRYLVIKTAISLATGIIVWVFLAAVG 219

Query: 238 VPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V      G++  ++  IP     I+     I  L+     +A  +     +   ++   L
Sbjct: 220 VRFAFIWGLLAFLLNYIPNIGSVIAAIPPLIQALLFNGFGDALVVAGGFIMINLVIGNML 279

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            P ++G  + L  L  F  L+     MG +G+ +   L  +  +  +
Sbjct: 280 EPRIMGRGLGLSTLVVFLSLIFWGWLMGPVGMLLSVPLTIIARIALE 326


>gi|220909201|ref|YP_002484512.1| hypothetical protein Cyan7425_3833 [Cyanothece sp. PCC 7425]
 gi|219865812|gb|ACL46151.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 364

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 108/326 (33%), Gaps = 13/326 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L+   + +     ++ A ++ F     +     +          +   S + L ++  +
Sbjct: 30  LLLFFEYFREPITILIVAAVLAFLLDHPFRWLEQR-GVGRGLALAMVLGSALLLLMLVGI 88

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    + +  +L          G      L+          L  + +           T
Sbjct: 89  TLLPVLIHQAHQLALASGDWIHSGKQQLVSLNLW--------LGNQGIPLNLINPSTLLT 140

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              ++ +  +        +  +      +   I   +    G  + Q + +         
Sbjct: 141 GHFSDQLQTLLSHLPNLIVRTVGGLFEGVLTAIITIYLLIKGEVLWQGILTWLPPKLARQ 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +          R+ F+G   +A+  G  L  A+ L  +P  +  GV   +MA+ P G  
Sbjct: 201 TRTTLPC---SFRNYFIGQGTLALLLGTALVIAFLLVQIPFGLLFGVFIGLMALFPFGGA 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS T V++ + +K +      +     +   IV+  + P L+G   ++  +     L+ G
Sbjct: 258 ISITLVTLIVALK-SFSLGLTVLAIATVVDQIVENGIAPRLLGHLTRVHPVWVILTLLIG 316

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
               G+LG+ +   L + I  + +  
Sbjct: 317 GHIAGVLGVILAVPLASFIKDVVEVY 342


>gi|254374014|ref|ZP_04989496.1| conserved hypothetical protein [Francisella novicida GA99-3548]
 gi|151571734|gb|EDN37388.1| conserved hypothetical protein [Francisella novicida GA99-3548]
          Length = 346

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 122/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      +  I         +  D+ ++++ +   L         + + +      
Sbjct: 135 KDMIISNLGKILPTIRYIGFTSVSLVTDFLITLLLVYQFLVSSTSLEKFLKKIVLKDF-- 192

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                            R   L + + A+  G ++   + + G+PS +  G I AI +M+
Sbjct: 193 ---HDSDSFISAAIATTRRVSLAIFLTAMLVGTIMTITFSMVGIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|256823487|ref|YP_003147450.1| hypothetical protein Kkor_2273 [Kangiella koreensis DSM 16069]
 gi|256797026|gb|ACV27682.1| protein of unknown function UPF0118 [Kangiella koreensis DSM 16069]
          Length = 348

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 104/346 (30%), Gaps = 19/346 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK--EESST 60
           ET      ++     F+I+  L     F  PV+ +L +     P+Y  F   K       
Sbjct: 4   ETSRVTSALVAIAATFLIIAGLKAASVFIVPVILSLFVAIILGPLYFFFARVKLPIIKKD 63

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A + V+ +  +    +       +++  + +             L     G    
Sbjct: 64  MPDWLAIILVVVIMSLFFFVIGTLVGNSVEQFSNNLPRYEMMLRAKFEGLVVWLAGH--- 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                       +++      +      +   ++           +   +I+   F   +
Sbjct: 121 -----------GVEVPQTPLAERFSPGVMMNLSASILNGLGGVLSNTFLIILTSIFLLME 169

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                 ++      +       +  ++ K+ R      +++++  G ++    WL GV  
Sbjct: 170 ASIFGDKMRRAFPDVESKAHLGLGEVISKIKR-YASIKSVVSLLTGAIISLWLWLIGVEY 228

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRP 298
               G+I  +   IP    I     ++ L       +              F+V   + P
Sbjct: 229 PFLWGLIAFMFNFIPNIGSIIAAIPAVLLAWLTSDTLSTPLLAAAGYLAVNFVVGNIIEP 288

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +G  + L  L  F  L+     +G +G+ +   L  ++ +    
Sbjct: 289 KFMGKGLGLSTLVVFLSLLFWGWVLGPVGMLLSVPLTIIVKIFLDA 334


>gi|289766067|ref|ZP_06525445.1| permease [Fusobacterium sp. D11]
 gi|289717622|gb|EFD81634.1| permease [Fusobacterium sp. D11]
          Length = 357

 Score = 99.3 bits (246), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 120/327 (36%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           KG+F  ++ A+ I     PI      K + +      ++ V V+ + ++  L +    + 
Sbjct: 31  KGYFMTLIMAIFIAILLEPIKKYLKKKSKINDVLAISLSIVFVVLIVVIISLIVIPEIIS 90

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +K L       ++  + + + +++         + TK L    +  I + T      + 
Sbjct: 91  SLKVLNDIYPAISEKVLTIGKDVTNYLAEKNIYTVDTKELDDYFTKFISNNTSNIKEFVL 150

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
                   + + F +  ++     + L        ++   +  +       Y     ++ 
Sbjct: 151 AFIGGLVNWTLGFTNLIVAFTLAFLILLDKKNLMKTLENLIIIIFGVKNTPYVMNKLKLS 210

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             +  S   G  I++   GL +     + G P      ++  +  MIP    I    V+ 
Sbjct: 211 KDIFISYISGKIIVSFIVGLCVYIILLITGTPYAALSAILLGVGNMIPYVGSILGGIVAF 270

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L++         L +  AI   +    + P ++G  + L        ++      GL+G
Sbjct: 271 FLILLVAPIKTLILLIAIAIAQLVDGFIVGPKIIGDKVGLSTFWVMVSMIIFGNLFGLVG 330

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKE 354
           +F+G  ++++I + + + + A +  ++
Sbjct: 331 MFLGTPILSIIRLFYIDLLKAKQGGEQ 357


>gi|146300706|ref|YP_001195297.1| hypothetical protein Fjoh_2957 [Flavobacterium johnsoniae UW101]
 gi|146155124|gb|ABQ05978.1| protein of unknown function UPF0118 [Flavobacterium johnsoniae
           UW101]
          Length = 366

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 60/347 (17%), Positives = 124/347 (35%), Gaps = 18/347 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFL---KGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M + +  P       I+  ++   Y     K    PVL A +      PI++   +K + 
Sbjct: 1   MTQPLKLPFYAKLACILVSLISFAYIFCIAKDILTPVLLAFLFAVLLLPIFTFLNTKLKF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A+I     +   +  L+F+ Y       +  +    AN   I + +++ +     
Sbjct: 61  PRHLAAIICMAVFLSFIVGILVFISYQVTYMANDFDTIKKNANSFIIEIHKFIRENFEIS 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +          S+K                       +   D  L    +II  F F
Sbjct: 121 IGDQKKYLDSVTKDSVKNGQAK-------------LGSAIISISDVLLDSTIIIIYTFLF 167

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                     L  L      +  K I   +   I +  + + I  I   ++ G   W+ G
Sbjct: 168 LIYKEHFKLFLAKLISKENHSVLKDILSQIKVSINNYIVSLIIEMIVVSVLTGLGLWIIG 227

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNATCLFLWGAIELFIVDKT 295
           +   + LG+IT I+ +IP    +    +++   + G+  I     + +   I  FI +  
Sbjct: 228 IKYFILLGLITGILNLIPYIGILVAGIITVLASLTGSAEISMILGILIVNIIVQFIDNNL 287

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L P ++   +++    +  G++ G    G+ G+F+   L+A++ +I+
Sbjct: 288 LVPLIINTKVEINAFVSIMGIIVGGAAAGISGMFLAIPLLAILKIIF 334


>gi|114778235|ref|ZP_01453107.1| permease, putative [Mariprofundus ferrooxydans PV-1]
 gi|114551482|gb|EAU54037.1| permease, putative [Mariprofundus ferrooxydans PV-1]
          Length = 357

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 86/301 (28%), Gaps = 11/301 (3%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
            +++          +     + L +  LL +      ++  L +      Q        L
Sbjct: 57  LMTRCRLPRMLAIGLTVGGALLLLLFALLAVLPLLTEQIGRLATHAPQYMQSLRDTLHQL 116

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
                     +   + ++            L    I  IP          +   +  + +
Sbjct: 117 QANYAEWINPDYLQQIIAGATDKMQEWGGALFKFSIASIPG--------MITLLVYAVLV 168

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
            + +FF  +D   I                +++ R +   I +   G    A   G  + 
Sbjct: 169 PVLVFFLLKDKQLIMSWAQQFLPRE-RTLLQRVWRELDIQIGNYIRGKFWEAFIIGCAMW 227

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIE 288
             YW  G    + LGV+T +   IP       T   I L     G         L   I 
Sbjct: 228 VVYWWMGHDYALLLGVLTGLSVWIPFVGMAVVTVPVILLSYFQWGWSDTMAYGLLAYVIV 287

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    + P+L    + L  +     ++      G++G+ I   + AL+  +    +  
Sbjct: 288 QAIDANVIVPWLFSEIVNLHPIAIIVAILMFGSLWGIVGVIIAIPMAALVKSVVSIILER 347

Query: 349 I 349
            
Sbjct: 348 R 348


>gi|229553048|ref|ZP_04441773.1| possible permease [Lactobacillus rhamnosus LMS2-1]
 gi|229313545|gb|EEN79518.1| possible permease [Lactobacillus rhamnosus LMS2-1]
          Length = 363

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 104/341 (30%), Gaps = 17/341 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +           +
Sbjct: 10  EKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHVRPFVI 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V   + V+   I   +      + +   L + V             +            
Sbjct: 70  VVPVYILVILGLIYAAVHYVPAIIHQTITLFNSVQDFYNSDAFANNQVMQWVL------- 122

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   QS K L+ T     G+  +  +A   G + L   LS I              
Sbjct: 123 --------QSTKSLNLTEQLKTGLSTVLEYAGNIGAMGLTLVLSFILSFFFTIELDSLPA 174

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                LDS     F    +  +                IA+   ++         +P+  
Sbjct: 175 FGQLFLDSPFGWYFKDL-RYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMPNIP 233

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++++IP    I     ++I     G   +   + +  A    +    L P  +
Sbjct: 234 SLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNPKFM 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 294 SSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 334


>gi|88802618|ref|ZP_01118145.1| hypothetical protein PI23P_08510 [Polaribacter irgensii 23-P]
 gi|88781476|gb|EAR12654.1| hypothetical protein PI23P_08510 [Polaribacter irgensii 23-P]
          Length = 360

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 111/343 (32%), Gaps = 20/343 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F+    L+ ++     ++ A I+   + P+     ++ +  +T   +   + ++     
Sbjct: 20  IFLCGAFLFTIQSVIFYIIIAGILSLIARPVILFLCTRLKFPNTLAVIFTMLLLLSFLSG 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++        + K L    V   Q  +               +E+ +  LS    +   
Sbjct: 80  LIVLFIPLIAEQGKSLSLLEVDDLQASVQEI-----------YAEINSYFLSKGIDVLNE 128

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +          IP F +          + +  ++   FFF +D   +   + +L     
Sbjct: 129 LKNIDLLASFKEIPNFLNAVLEAIGSLSVGLFAVLFISFFFMKDRHLLKNGMMTLIPTGK 188

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
              + K    +  ++   F+G+                +  + + + +  + A++ +IP 
Sbjct: 189 EGRFSKSLEAINSLLSRYFIGLLSQITILYFFYALILLVFDIDNALVIAFLCALLNLIPY 248

Query: 257 GAPISFTAVSIYL---------LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             PI    +   L              +  +  +  W  +   + +   +P +     K 
Sbjct: 249 VGPIIGAVIMFILSMTSNIGLDFQTEMLPTSIWILFWYLMAQLVDNFVSQPLIFSKTTKS 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L  F  +V G    G+LG+     +   + VI KE +   K
Sbjct: 309 HPLEIFLIIVIGGLLFGILGMIAAVPMYTALKVILKEFLSDNK 351


>gi|294626743|ref|ZP_06705338.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294664317|ref|ZP_06729683.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292598991|gb|EFF43133.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292605909|gb|EFF49194.1| permease family protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 368

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 106/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    P++ A        PI      K        A++     +
Sbjct: 31  LVVLTTLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGL-RKLYIPRFLGALLILCLGL 89

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     L       +++   ++    +    + + +                     
Sbjct: 90  AGTVTLAAQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGGEGQRG 149

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 150 VQIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 198

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + 
Sbjct: 199 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLQIPLPEAILWGTVV 258

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 259 ALLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 319 ISPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 354


>gi|138896299|ref|YP_001126752.1| hypothetical protein GTNG_2662 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267812|gb|ABO68007.1| Membrane protein, putative [Geobacillus thermodenitrificans NG80-2]
          Length = 320

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 10/301 (3%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              K +        +  + +       ++ L    +   + L   V    Q  I      
Sbjct: 1   MERKTKMPRWLAVSVTLIVLFAAVAGIVILLIAEIVSGTQYLADVVPEKFQALIAYMESF 60

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF----------IPRFASRFGMIF 160
           +         +L     S   + +      ++  G             + +   +     
Sbjct: 61  AANQLIPLYQDLAVLFKSLNDNQQDTIMQNIQAVGTQIATTVGEFIQRVLQNIPQLLAWL 120

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            +     IF ++A FF  +D   + + +            K +   + + +         
Sbjct: 121 PNAATVFIFSLLATFFISKDWHRLMRMIQQWLPAKARTSGKTVFLDLKRALFGFIKAQAT 180

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +     +++     +  V   + + +I   + ++P           I             
Sbjct: 181 LISITTVIVLIGLLILRVDYAITIALIIGFVDILPYLGTGIVFVPWIIYAAVSGDIPFAI 240

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                 I + +  + + P ++   I L  L T   L  G + +G LGL  GPV++ +I  
Sbjct: 241 GLGVLYIVVLVQRQIMEPKVLSSSIGLDPLATLIALFVGFKLLGFLGLIAGPVILVIIRT 300

Query: 341 I 341
           +
Sbjct: 301 L 301


>gi|325577684|ref|ZP_08147959.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
 gi|325160429|gb|EGC72555.1| PerM family permease [Haemophilus parainfluenzae ATCC 33392]
          Length = 346

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/346 (13%), Positives = 112/346 (32%), Gaps = 20/346 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +   + ++    + I+   +        P L AL I     P+  +   +K     
Sbjct: 1   MEKNLNFNRTVVAMAALVIVFAGIKLAAEIVVPFLLALFIAIICSPVIKAMTQRKVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A+     ++ +    L  L    + E    + +  +                     +
Sbjct: 59  GIAIALLFILILIVFFFLAGLINSSVQEFTRSIPQYKVLLSE---------------RVN 103

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++          + I  E  ++      I  F SR  + F     ++  +I+A+ F   +
Sbjct: 104 DVMALAQKLKLPIVISREAIMEHFDPSVIMNFVSRLLLNFSGVVTNVFVLILAVIFMLLE 163

Query: 181 GFSISQQLDSLGEHLFPAY--WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             ++  +L  +           +     +   + S     T+I++  G        +AGV
Sbjct: 164 APTMKHKLALVLSDNEHDVVAEEHHIDRILDGVISYLGVKTVISLLTGFTTWILLDVAGV 223

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              +    ++ ++  IP    I      I   L+         + +   +   ++   + 
Sbjct: 224 QYAILWATLSFLLNYIPNIGSIIAAVPIIVQALLLNGFGVGMGVTVGIIVLNIVIGNIIE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P ++G  + L  L  FF L+     +G +G+ +   L     +  +
Sbjct: 284 PKMMGKTLGLSTLVVFFSLLFWGWLLGTVGMLLSVPLTMAFKITLE 329


>gi|168819237|ref|ZP_02831237.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197249301|ref|YP_002146564.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197213004|gb|ACH50401.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205343801|gb|EDZ30565.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320086041|emb|CBY95815.1| UPF0118 membrane protein HI0338 [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 344

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 105/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 131 --------------NAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   PA      +     +    +  T I+I  GLV         V      G++ 
Sbjct: 177 SR------PAEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++     I +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|56707640|ref|YP_169536.1| hypothetical protein FTT_0501c [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670111|ref|YP_666668.1| hypothetical protein FTF0501c [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456709|ref|ZP_03665182.1| hypothetical protein FtultM_02652 [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370155|ref|ZP_04986161.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254874457|ref|ZP_05247167.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604132|emb|CAG45134.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110320444|emb|CAL08517.1| conserved hypothetical membrane protein [Francisella tularensis
           subsp. tularensis FSC198]
 gi|151568399|gb|EDN34053.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis FSC033]
 gi|254840456|gb|EET18892.1| conserved hypothetical protein [Francisella tularensis subsp.
           tularensis MA00-2987]
          Length = 346

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 55/326 (16%), Positives = 128/326 (39%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +  +  + L  F  P+L A ++     P+               + I  ++++   
Sbjct: 17  IICLVGALIGWVLYPFIYPILFAGLLAIILAPLQLYLEQHIGRHK--SSFIIVIAILLCI 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +PLL +  Y + E+   +      +Q    + + +++IP      +    +L +  +  
Sbjct: 75  FIPLLIVLSYVITEIISYLQHSESLSQTFSQLSKSIANIPYIGSTLQEHFDNLLNMVNQD 134

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  + +  I       G   +      +  ++ ++ F     S+ + L  +   
Sbjct: 135 KD----MIISNLGKILPTIRYIGFTSVSLLTDFLITLLLVYQFLVSSTSLEKFLKKIILK 190

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      IS  +    R   L + + A+  G ++   + +  +PS +  G I AI +M+
Sbjct: 191 DFHDSDSFISAAI-ATTRRVSLAIFLTAMLVGTMMTITFSMVDIPSPILFGFIAAIASMV 249

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   +KL F+ +  
Sbjct: 250 PFMVGIIYILIGASVFVIYGATKAIIILIIGFSLNIFTDNIMQPKIINKQVKLSFVASLI 309

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG+   G +G+F+GPV+  +  V
Sbjct: 310 GIMGGIHAFGFIGIFLGPVIFNVAFV 335


>gi|301154789|emb|CBW14252.1| predicted inner membrane protein [Haemophilus parainfluenzae T3T1]
          Length = 346

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 111/346 (32%), Gaps = 20/346 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M + +   + ++    + I+   +        P L AL I     P+  +   +K     
Sbjct: 1   MEKNLNFNRTVVAMAALVIVFAGIKLAAEIVVPFLLALFIAIICSPVIKAMTQRKVPH-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA   +  L ++   FL       ++E    +             +  +   +   
Sbjct: 59  ---GIAIALLFILILIVFFFLAGLINSSVQEFTRSIPQYKVLLSERINDVMALAQKLKLP 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                       + I  E  ++      I  F SR  + F     ++  +I+A+ F   +
Sbjct: 116 ------------IVISREAIMEHFDPSVIMNFVSRLLLNFSGVVTNVFVLILAVIFMLLE 163

Query: 181 GFSISQQLDSLGEHLFPAY--WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             ++  +L  +           +     +   + S     T+I++  G+       + GV
Sbjct: 164 APTMKHKLALVLSDNEHDVVAEEHHIDRILDGVISYLGVKTVISLLTGVSTWILLDITGV 223

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              +    ++ ++  IP    I      I   L+         + +   +   ++   + 
Sbjct: 224 QYAILWATLSFLLNYIPNIGSIIAAVPIIVQALLLNGFGVGMGVTVGIIVLNIVIGNIIE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P ++G  + L  L  FF L+     +G +G+ +   L     +  +
Sbjct: 284 PKMMGKTLGLSTLVVFFSLLFWGWLLGTVGMLLSVPLTMAFKITLE 329


>gi|315650584|ref|ZP_07903648.1| permease [Eubacterium saburreum DSM 3986]
 gi|315487148|gb|EFU77466.1| permease [Eubacterium saburreum DSM 3986]
          Length = 367

 Score = 99.3 bits (246), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 110/321 (34%), Gaps = 8/321 (2%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P ++  ++ +    +   +     +      +I TV+++      +L +     L + 
Sbjct: 40  LMPFVAGAVMAYIINILMDFYEDLLLKKFHNKKIIRTVAIVLSIFTFVLVIVLLLGLIIP 99

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF-----LKTNG 145
           +L+  +           + + +  G     +     ++   +   +S           + 
Sbjct: 100 QLIKIMFSIMYTNPGDIKKIIESIGKNNIVDKIADMMNVDINNIDISGYVTKLIRSVMSS 159

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF---PAYWKK 202
           +  I          F +  +S+   ++   +   D   I+ Q D L              
Sbjct: 160 VGNILMGVISGISGFFNTIISVFMAVVFAIYILMDKERIAVQGDKLLRAFLPSKRDSVID 219

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           + RI     R+ F+     AI  G++L     +A +P   ++ ++  + A+IP     + 
Sbjct: 220 VLRIFNTSFRNYFISQVKEAIILGVLLYIVMIIARLPYASSISILVGVTALIPVIGAYAG 279

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   +++  +  +     +   +     +  + P +VG  + LP +     +  G   
Sbjct: 280 LFIGTLMILTKSFSSMIIFIIVHTVVQQFENNIIYPRVVGSSVGLPGMWVIVAVALGGSL 339

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            G+ G+F+   + A +  I K
Sbjct: 340 GGIFGVFVAVPVAASLYFILK 360


>gi|28198155|ref|NP_778469.1| transport protein [Xylella fastidiosa Temecula1]
 gi|28056215|gb|AAO28118.1| transport protein [Xylella fastidiosa Temecula1]
          Length = 387

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 107/335 (31%), Gaps = 17/335 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI  +    +   +    ++  + + 
Sbjct: 50  LVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALLLLCLGIS 109

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++ +                      Q      R ++     +              
Sbjct: 110 GTVVLSVELAGP------------ASEWIQQAPDKIRQVARQVRHLTRPMQQANQAVESL 157

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +     ET  ++  +           M      +S++ +I+  FFF   G  + ++  +L
Sbjct: 158 ARAADGETERQSQIVRTRLYNPYTVLMDTHKLVISVLGVILLTFFFMVFGEKLQRKAIAL 217

Query: 192 GEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
             +     +   I R +   I    L +++I    GL+      L  +     +  G + 
Sbjct: 218 LPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEALLWGTVV 277

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + +   L+       A    L   +   +  + + P ++G  + 
Sbjct: 278 ALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPIILGHRMA 337

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  L     L+      GL+GL +   ++  I ++
Sbjct: 338 ISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMV 372


>gi|297155054|gb|ADI04766.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
          Length = 341

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/335 (11%), Positives = 97/335 (28%), Gaps = 18/335 (5%)

Query: 13  RWMIMFIILVSLYFLKGF---FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             ++  ++  +   L  F      V   L++     P+                 +A + 
Sbjct: 15  LLVVGALVYAAFKVLGRFELVAVAVFLGLVVTALLRPLADLLERL--VPRPLAVAVALIG 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  L  +      E   L+ +                         +   +    
Sbjct: 73  SIVVVLGLLALVGSVAAAEAGRLLGEFRGGVGRISRWLE------------QPPFRIKHG 120

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                    +         +   A       ++        +    FF   G  +     
Sbjct: 121 TLQGLHERISTFVATHRGTLISRALSGANRVVEALTGAALALFCSVFFIYGGDRMWLWFH 180

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +       + W + +R           G+ I+A     ++G A +L  VP  + L V+  
Sbjct: 181 AQLPETARSPWDRAARAAWSTFAGYTRGIIIVAASNATLVGIALFLLRVPLALPLTVLVF 240

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
               IP    PI+    ++  L       A  + +   +   I    L P ++   ++L 
Sbjct: 241 FATFIPLIGAPIALAVATVVALAGRGPVIAAAVLVLIVVIGQIEGHVLHPLVMSWAVQLH 300

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +     ++GG    G++G  +   +++++  + +
Sbjct: 301 PVVVAISVIGGSLVAGVIGAIVAVPMVSVVWSVVR 335


>gi|292491658|ref|YP_003527097.1| hypothetical protein Nhal_1573 [Nitrosococcus halophilus Nc4]
 gi|291580253|gb|ADE14710.1| protein of unknown function UPF0118 [Nitrosococcus halophilus Nc4]
          Length = 358

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 66/311 (21%), Positives = 130/311 (41%), Gaps = 5/311 (1%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  ++  I+   +  ++ +   +L A+I     +P+Y+  +          +VI  
Sbjct: 12  RKAFILVLLTAILAAFIAIIREYLIALLLAIIFTALLYPVYNQVLRILHGRRALSSVIVL 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  + +  +PLL L      E  ++   V    +  +P    LS      +    +++ L
Sbjct: 72  VLAIFVIGLPLLGLLGAVAAEAVQISESVEPWLEKKLPDQHDLSRDIPEWF---PFSEQL 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +S  I     L  N  +F+ +  S      +++ +    M+ A+FFF   G      
Sbjct: 129 EPYKSRIIAKGGELAGNAGEFLAKSISAVTQGTINFIVKFFIMLYAMFFFLMWGPDSLTV 188

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      L       +      + ++    + +I + +G+++G A+W+AG+   +  G I
Sbjct: 189 LMRYIP-LTEKDRSLLLEKGLAITKAILKSILVIGVLQGILVGLAFWVAGLKGAIFWGAI 247

Query: 248 TAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +++ IP  GAP+ +    IYL + G    A  + LWG+I +  VD  LRP +VG   K
Sbjct: 248 VVVLSAIPGLGAPLIWIPAVIYLALSGQTGWAIGMTLWGSIIVGSVDNILRPHIVGSEAK 307

Query: 307 LPFLPTFFGLV 317
           +P L      +
Sbjct: 308 MPDLLILLATL 318


>gi|325300722|ref|YP_004260639.1| hypothetical protein Bacsa_3645 [Bacteroides salanitronis DSM
           18170]
 gi|324320275|gb|ADY38166.1| protein of unknown function UPF0118 [Bacteroides salanitronis DSM
           18170]
          Length = 331

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 52/325 (16%), Positives = 115/325 (35%), Gaps = 22/325 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+ + ++     + +   +L    +        +    K +        I T+
Sbjct: 7   KYSLIILIVGLGILLFRQAQPYMNGILGGFTLYLLLRGFTNWL--KSKIKPLVAVWIVTI 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                 ++PL    +  + ++  L        +    +   +    G    SE       
Sbjct: 65  GTTLFILIPLSLFSWAVVNQISNLHFDTADIIRPAQQMIDIIEKRTGFDVLSEKN----- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +  I               D  +++   I+ LFF   +G  + Q +
Sbjct: 120 -------------LSFIITQASSIGHSIMTGVSDLIINLAVAIMLLFFMLWEGDKMEQFI 166

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         +++ + +  ++RS  +G+ ++AI +G +    Y L   P+ V   ++T
Sbjct: 167 SELLPFE-ENNKREVLQKIQLIVRSNAIGIPLLAIIQGFISLFGYLLCHAPNPVLTAMLT 225

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              +++P     + +  V+ Y  I G+  +   L  +G I +   D  +R  L      +
Sbjct: 226 GFASIVPLVGTALVWVPVTAYFFIIGDWVHGLILLAYGGIIISQCDNLIRFILQKKMANI 285

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGP 332
             L T FG+V G+   G +G+  GP
Sbjct: 286 HPLITIFGVVAGLPIFGFMGIIFGP 310


>gi|154687049|ref|YP_001422210.1| YtvI [Bacillus amyloliquefaciens FZB42]
 gi|154352900|gb|ABS74979.1| YtvI [Bacillus amyloliquefaciens FZB42]
          Length = 371

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/324 (16%), Positives = 99/324 (30%), Gaps = 10/324 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P L ALI+     P+            +   VI  V  + + +    FL    +  
Sbjct: 31  PLTYPFLIALILSSAIIPVVDWLDKLTGMPRSVNTVIVLVFFLLILLGAATFLVAEIISG 90

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG--- 145
              L   +       +     L          EL         + +    T ++T G   
Sbjct: 91  TAYLAKTLPPHISAFMTYCEELFTSRIQPLYHELTVLFNGLETNQQASIVTHIQTLGDTA 150

Query: 146 -------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  +     ++     +     IF ++A FF  +D   +   L S+      A
Sbjct: 151 AKNAGLMLSHLLELVPKWIAFLPNTAAVFIFAMLATFFMTKDWHKLKALLYSILPERVSA 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             K +S  + K +        ++ +   +++    +L G+     +     ++ ++P   
Sbjct: 211 NAKAVSGELKKAMAGFIKAQAVLILFTMIIVFIGLFLLGIEHAATIAFFIGLVDLLPYLG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             S     I  L                I + I  +   P ++   I L  L T   L  
Sbjct: 271 AGSVFVPWIMYLAIAGQLPQAIGLGVLYIVVLIQRQLTEPKILSKSIGLDPLATLIALFA 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G +  G+LGL  GP L+  I    
Sbjct: 331 GFKLFGILGLAAGPALLVFIQAFI 354


>gi|257875839|ref|ZP_05655492.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257810005|gb|EEV38825.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 366

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 114/338 (33%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F+           F PVL ++ I +   P ++    + +   +       + ++    
Sbjct: 29  ILFVFRPLEAIFSSVFLPVLISIFIFYIFLPFFNWVKRRTK-KKSIALYATLLLIVFAAY 87

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      EM   ++++ +     I               S L         S+ I
Sbjct: 88  LIIQVIGPALAYEMGRFINQIPVIINLVIDNIDH----------SYLEELFGPFIDSIDI 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +      I       +    I     + +  + + L + ++DG  +   L +     
Sbjct: 138 SQASNFALQFITGATNSLTSLISIVSHSAIVLFTIPLLLVYMFKDGEKVPDFLANKTPKK 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    +++     +   +   G  ++     +     + L G+ + + LG+I  ++ +IP
Sbjct: 198 YQGLMRQLCSDFHQAASAYIGGKLLVCSYVAVSSYLIFSLLGLQNALLLGLICGVLDIIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A +    +  +I  A  L +   I        + P ++   + +  +   F 
Sbjct: 258 YFGPFIGAAPAFLFALSLDIRTAILLVVGITIIQLGESYLVSPLVMNKVLHIHPIIAVFL 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+     +G +G+ +   + ++I  +    +   +E K
Sbjct: 318 LLIAGNLLGFVGMIVALPVYSIIMAMSGTLLRFFQERK 355


>gi|242280211|ref|YP_002992340.1| hypothetical protein Desal_2747 [Desulfovibrio salexigens DSM 2638]
 gi|242123105|gb|ACS80801.1| protein of unknown function UPF0118 [Desulfovibrio salexigens DSM
           2638]
          Length = 365

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 108/351 (30%), Gaps = 8/351 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    +++ +  L  L     P   AL + +   P+ +      +  +  + +    
Sbjct: 15  RLLLIAGFIWVAITLLNTLSAVLVPFAVALTLAYLLNPLVNFVGRYIKNRTAAVLLTLLT 74

Query: 69  SVMCL--FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++ L       +      M +   +++++V  +        ++ +            + 
Sbjct: 75  LLVPLVKIFWMTVRTVGIEMKQTGVMLARMVNDSAVAQRAAEYIPEDLWHTIVDLAKQED 134

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    +   L++    +        +    G       L+ +F+I     F    +    
Sbjct: 135 VRSFLTESGLTDMLKVSAQKALPGIWNIVSGSAHTLGMLAGLFVIFLYLVFLLTDYDKLG 194

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           +        +             V    F    +IA+  G +    + +  +P  + LG+
Sbjct: 195 KWREQIPSRYRERVASFVDDFTNVTNRYFRTQALIALIIGCLFSLGFLIIKLPLAILLGM 254

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF------IVDKTLRPFL 300
           +  ++ M+P           +   I             G + +       + D  L P L
Sbjct: 255 LIGLLNMVPYLQIAGLIPAFLLAAINALATGGNFWLALGGVGVVFAVVQVLQDAVLVPRL 314

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G  + L        L    + +G LGL +   L  +   ++++ +M   E
Sbjct: 315 QGESMGLSPWMILLSLSIWGQLLGFLGLVMALPLTCMALALYRQWVMGQGE 365


>gi|120555864|ref|YP_960215.1| hypothetical protein Maqu_2954 [Marinobacter aquaeolei VT8]
 gi|120325713|gb|ABM20028.1| protein of unknown function UPF0118 [Marinobacter aquaeolei VT8]
          Length = 386

 Score = 99.3 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 98/314 (31%), Gaps = 17/314 (5%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I +   P+ ++            A      V+C  I  L         E   ++ K+  A
Sbjct: 62  ISYALDPLVATLDRIHIPRPLGAA-----LVLCTLIAILAAASVPLKQEAMAMLDKIPQA 116

Query: 100 NQHGI--------PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +                +          E   ++     +++         +    +  
Sbjct: 117 IKELQREDASTSEDEESIMEKAQIAAKQIEETAENREGKPAVQAGVTPVRVVDEPMDVRD 176

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVPK 209
           +  R     +     +  +++ +FF    G    +++  +    F    K  +I   +  
Sbjct: 177 YVIRNSPATIVLISQMFSVLLLVFFLLSVGKLYRRKIVRISGPSFRRMRKAARIMNELHH 236

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +R     M I A+  G++   A+ L GV      GV+  I + +P   P      S   
Sbjct: 237 QVRRFLFVMVISALFVGILTWLAFLLLGVEQAALWGVVAGIASGVPYLGPFLVLVGSGVA 296

Query: 270 --LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L  G +  A  + L   +   I    L P+L      L  +  F GL+      G +G
Sbjct: 297 AFLQFGELNTAVIVALTSLVITSIQGNLLMPWLTSYVSSLNAVAIFIGLLFWGWLWGPVG 356

Query: 328 LFIGPVLMALIAVI 341
           L +   ++ +   +
Sbjct: 357 LIVATPILMIAKSV 370


>gi|315648858|ref|ZP_07901953.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
 gi|315275826|gb|EFU39178.1| sporulation integral membrane protein YtvI [Paenibacillus vortex
           V453]
          Length = 343

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/332 (13%), Positives = 127/332 (38%), Gaps = 2/332 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I + + + + L  LY +    AP L A++I     P+    + +   +    A   +  
Sbjct: 2   SIKQLIFIGLGLFLLYGMFTVGAPFLLAIVIAIALEPLNRLLMKRLRLNRIAAATATSTL 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L ++    +      ++ E  S+     +      +    I          +  L+ 
Sbjct: 62  FLLLLLLLAYLIGLQVFNQLVEYWSRAPQYFEGANEFLQH--TIIQAQDMLNGISPGLAD 119

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +  + + +    + ++ +      F     +  ++ I   +A++ F     ++ +++ 
Sbjct: 120 SLTEFMSNISSYVQSLVNSVSSTFLSFAKTLPNLFVTFIVFCVAVYLFAFSLDTMRERVL 179

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL +    +   ++   + K I        I+++   ++      + G+   +A+ ++  
Sbjct: 180 SLFDETSQSQVNEVLLSLKKSIFGFLRAQLILSLFTYVITLLGLLILGINYPLAIALLVT 239

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ ++P     S        L+           ++  I + ++ + L P ++G  + +  
Sbjct: 240 IVDILPILGVGSVLVPWSVYLLATGDVFTGLGLIFLFILITVIRRVLEPKVIGDAVGIGA 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           LP    +  G + +G++G FIGP+++ + + +
Sbjct: 300 LPALVSMYVGFKLVGVIGFFIGPLVVIIYSAM 331


>gi|126650494|ref|ZP_01722717.1| hypothetical protein BB14905_07888 [Bacillus sp. B14905]
 gi|126592650|gb|EAZ86649.1| hypothetical protein BB14905_07888 [Bacillus sp. B14905]
          Length = 322

 Score = 98.9 bits (245), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 48/310 (15%), Positives = 97/310 (31%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A I  F   PI   F  + + S         +  + +  +         M ++  
Sbjct: 1   MPLILAAISAFFLEPIVMFFKRRWKMSRKIAVAFIYIVSVIIISIICYISITQIMTQIIL 60

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  +          +   + +               S  ++     +   +T    F   
Sbjct: 61  LSKQAPYYISKLSDMWLHMQENISKYTEDFPPEVSTSLQKTTMDFIKKIEETFLSFFNYS 120

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S F        +S++  +IALF F  D   + +      +       K I   +    
Sbjct: 121 KVSAFFSEIPSLFISLLVYMIALFLFMLDLPKLKRITYKYLKPNTAKKIKIILNRLKDAT 180

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                    ++   G V      L      + + +I  ++ ++P    I   A      +
Sbjct: 181 FGYMKAHLFVSFIIGGVTLIGLLLIQPKYAITMTIIIWLIDIVPFLGSIIILAPWGLYHL 240

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                         A  L I+ + + P L+G  I L  LPT   +  G++  G++GL +G
Sbjct: 241 LMGNTAIAVKLFILAAILLIIRRVVEPKLMGEHIGLSTLPTLIAMFIGLQLFGIIGLLVG 300

Query: 332 PVLMALIAVI 341
           P ++     +
Sbjct: 301 PFVIIFFIAL 310


>gi|296447406|ref|ZP_06889332.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296255109|gb|EFH02210.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 360

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/348 (13%), Positives = 106/348 (30%), Gaps = 23/348 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q  +    + ++   L+        +    ++      + S               +A V
Sbjct: 18  QRALWIAGLLLVAAILWLASDVVL-ISVGALLVAVLLQVVSEPFRWVRLPRGLSLFLAGV 76

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            + C+ +            +++E++ +V  A      +                      
Sbjct: 77  LIFCVLVGVGYLFGTAIAAQLEEVIDRVQEAQSGLTRLLN-------------------- 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S                +    SR   +  +  + ++ MI    +         + L
Sbjct: 117 --SSDIGRMALKNVRGVDVPLTDIFSRLFSVSANVVVGLVVMIFGGIYLAAQPALYREGL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L    +    ++    V + +R    G  I  +  G + G A WL G+PS +ALGV+ 
Sbjct: 175 SRLFPREWRGEVEETIDTVARALRLWLFGQLIEMVIIGAMSGVAVWLIGLPSALALGVVA 234

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +   +P   PI     +I + +  +   A   F        +  + + P +    + +P
Sbjct: 235 GVAEFVPYLGPIVAAVPAILVAVTLSPATALWTFFAYVAIHQLEGQLVMPLIQRRMVFIP 294

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
                  +V      G++G      L  +I V+  +  +     +E +
Sbjct: 295 PAVMLLSIVAIGYAFGVVGAMFAAPLTVIIFVLVSKLYVRDALGQEAV 342


>gi|308174610|ref|YP_003921315.1| permease [Bacillus amyloliquefaciens DSM 7]
 gi|307607474|emb|CBI43845.1| putative permease [Bacillus amyloliquefaciens DSM 7]
 gi|328554535|gb|AEB25027.1| permease [Bacillus amyloliquefaciens TA208]
 gi|328912939|gb|AEB64535.1| putative permease [Bacillus amyloliquefaciens LL3]
          Length = 371

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 99/324 (30%), Gaps = 10/324 (3%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P L ALI+     P+            +   VI  V  + + +    FL    +  
Sbjct: 31  PLTYPFLIALILSSAIIPVVDWLDKLTGLPRSVNTVIVLVFFLLILLGAATFLVAEIISG 90

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG--- 145
              L   +       +     L          EL         + +    T ++T G   
Sbjct: 91  TAYLAKTLPPHISAFMTYCEELFTSRIQPLYHELTVLFNGLETNQQASIVTHIQTLGDTA 150

Query: 146 -------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +  +     ++     +     +F ++A FF  +D   +   L S+      A
Sbjct: 151 AKNAGLMLSHLLELVPKWIAFLPNTAAVFVFAMLATFFMTKDWHKLKALLYSILPERVSA 210

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             K +S  + K +        ++ +   +++    +L G+     +     ++ ++P   
Sbjct: 211 NAKAVSGELKKAMAGFIKAQAVLILFTMIIVFIGLFLLGIEHAATIAFFIGLVDLLPYLG 270

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             S     I  L                I + I  +   P ++   I L  L T   L  
Sbjct: 271 AGSVFVPWIMYLAIAGQLPQAIGLGILYIVVLIQRQLTEPKILSKSIGLDPLATLIALFA 330

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
           G +  G+LGL  GP L+  I    
Sbjct: 331 GFKLFGILGLAAGPALLVFIQAFI 354


>gi|88798200|ref|ZP_01113786.1| hypothetical protein MED297_13117 [Reinekea sp. MED297]
 gi|88778976|gb|EAR10165.1| hypothetical protein MED297_13117 [Reinekea sp. MED297]
          Length = 334

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 96/339 (28%), Gaps = 24/339 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G++    +FII+  L   +    PVL A  +   + P  +  +  +         IA  
Sbjct: 8   RGLIVIASIFIIIAGLKVAQPIVMPVLVAFFLAALTSPAVNLLVRFRMP-----LGIAIT 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L I     L        ++ + ++             L D    +           
Sbjct: 63  VVVVLLIGFFYALGRVLGNSTEQFLDRLPDYQHQLELWLVQLKDKVPWLIEDIEQRIAEF 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P    I     L +     +         +      S                      
Sbjct: 123 QPTDSAIAIVGRLFSGVGSVLTAIVLIVFTLIFTLLES------------------RNAS 164

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + L             +   K+++   L  ++I++  G+++       GV   +  G   
Sbjct: 165 EKLRIAFGDDKTIGYIKRFSKMVQRYLLVKSLISLATGILVAILLIFLGVDYPILWGTFA 224

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +M  IP    +      + L      +               I+   + P L+G  + +
Sbjct: 225 FLMNFIPNVGSLLAAIPPMILAGLQLGLPGFLITTGGFVAINMIIGNLIEPRLMGKTLDI 284

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             L  F  LV     +G +G+ +   L  +I +  +   
Sbjct: 285 SPLIVFLSLVIWGWILGPIGMLLSIPLTVVIKIALEVYP 323


>gi|237731440|ref|ZP_04561921.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226906979|gb|EEH92897.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 351

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 105/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    + K          +  V
Sbjct: 19  KIVIMLGMLVIILSGIRFAADIIVPFILALFIAVVLNPVVQRMV-KLRIPRVIAVSLLIV 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 78  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLKNLEPWLQRAGIGVSVDELVKYIDP 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             +      +       +   SI  +++ + F   +   +  +L
Sbjct: 138 ------------------NAAMTLVTNLLAQLSNAMSSIFLLLLTVVFMLLEVPQLPNKL 179

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 180 KQM--MSRPIEGMAAIQRAIDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 237

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L    +++A  +     +   +    L P ++G  + L
Sbjct: 238 FALNYIPNIGSVLAAIPPIAQVLAFSGLYDALVVLAGYLVINLVFGNILEPRIMGRGLGL 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 298 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 334


>gi|157370131|ref|YP_001478120.1| putative transport protein [Serratia proteamaculans 568]
 gi|157321895|gb|ABV40992.1| protein of unknown function UPF0118 [Serratia proteamaculans 568]
          Length = 350

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 122/347 (35%), Gaps = 25/347 (7%)

Query: 1   MRETMLNPQGI---MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M  T+L  + +   +   ++ IIL  +        P L AL +     P+ +     +  
Sbjct: 1   MGRTLLTDRSLRLAIMLAMLVIILAGVKAAVDVVVPFLLALFLAMVLNPLVAQLERWRVP 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
               ++++  V V+ L +   +                    N+    +P++   +   +
Sbjct: 61  RVLGVSLLVVVVVVLLMLFVGVLGA---------------SLNEFARSLPQYRGLMLEKL 105

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              + +    +   S + + +    +  ++ I R  SRF     +  L ++ ++  LF  
Sbjct: 106 SELQHYADRFNITISTEAMLQYVDPSAAMNLITRLLSRFSGAMTNIFLLLMTVVFMLFEV 165

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
               + + Q LD       P+      +     +    L  T I++  G+++ +   +  
Sbjct: 166 QLLPYKLQQALDK------PSEGMANIQRALDGVTRYLLIKTAISLATGIIVWAFLAVID 219

Query: 238 VPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V      G++  ++  IP     I+     I  L+     +A  +         ++   L
Sbjct: 220 VRFAFIWGLLAFLLNYIPNIGSVIAAVPPLIQALLFNGFGDALVVAAGFITINLVIGNML 279

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            P ++G  + L  L  F  L+     MG +G+ +   L  +  +  +
Sbjct: 280 EPRVMGRGLGLSTLVVFLSLIFWGWLMGPVGMLLSVPLTIITRIALE 326


>gi|300866882|ref|ZP_07111557.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300335132|emb|CBN56719.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 354

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 110/322 (34%), Gaps = 13/322 (4%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++L+   + +      ++A ++ F           +         V+     + + +V  
Sbjct: 26  LLLLVFEYFRSLITVFVTATVLSFLLDYPVHFL-RRYGVKRQQAVVLVLCLFLLILVVLA 84

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L    + ++ ELV+++      G      L +                          
Sbjct: 85  VTLAPIILGQLNELVTRLPSWINSGAEQFETLHNWAKNRNLPIDLRGFAKQLSERFSTQL 144

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             +    +  +   A           L ++  ++  F+    G  +   L         +
Sbjct: 145 QSIIGQILTVVLGAAGS--------LLDLMITVVLTFYLLLHGQRLWDGLFQWFPPELGS 196

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             ++      +  ++ F+G   +A   GL +  A+ +  VP  +  G+   IM +IP GA
Sbjct: 197 QIRESL---RRNFQNYFIGQATLATFMGLSMTVAFLILQVPFGLLFGLAVGIMTLIPLGA 253

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +S + VS+ +    N +    +     +   +++  + P L+GG   L  +  F  L+ 
Sbjct: 254 GLSISIVSLLMA-LNNFWLGMKVLAVATVLDQVIENGIAPRLLGGFTGLNPVWIFISLLI 312

Query: 319 GVRTMGLLGLFIGPVLMALIAV 340
             +  GL+GL +   +   I  
Sbjct: 313 ATKVGGLIGLLVAVPIAGFIKS 334


>gi|290509932|ref|ZP_06549302.1| hypothetical protein HMPREF0485_01702 [Klebsiella sp. 1_1_55]
 gi|289776648|gb|EFD84646.1| hypothetical protein HMPREF0485_01702 [Klebsiella sp. 1_1_55]
          Length = 366

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 119/346 (34%), Gaps = 4/346 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ +          F   +L ALI+    +P++  F           +V+  +  
Sbjct: 22  IRFGLILALASFCFTVFSPFINMMLWALILAVALYPLHQYFAGLLAGKQGLASVVLVLLG 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L ++P + +          ++ K+   +    P    ++ +P             S  
Sbjct: 82  ILLIVIPTVLMITSLAESASAMIDKMGSQSFTIPPPSSRIAALPIIGERLSALWMRASVD 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + +      +         +  G   + + +S I   I + +      S  +    
Sbjct: 142 LPGLLSNYRSQIGDIAKQFLSILASMGGGLIGFIISFIVSGIMMAWGAAGAISAQRIAIR 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           + +        ++       IR+   G+  +A+ + L++G    +A +P+     ++  I
Sbjct: 202 ITDENKGVTLTRL---CTSTIRAVAQGVIGVALIQALLVGVIMLMASIPAVGIFFILALI 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +      +        +   G         +    I   + D  L+P L+G  +  P 
Sbjct: 259 LGIAQVPVILVTAPAIALMWSLGTHSTGMDIFYTILMIVAGMADNVLKPLLLGRGVDAPM 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                G +GG+ + G+LG+F+G  L+A+   I+   +   +    +
Sbjct: 319 PVVLLGALGGMASNGILGMFLGATLLAIGYRIFMTWVNEGQPALPQ 364


>gi|116495596|ref|YP_807330.1| permease [Lactobacillus casei ATCC 334]
 gi|191639078|ref|YP_001988244.1| Predicted permease [Lactobacillus casei BL23]
 gi|239629996|ref|ZP_04673027.1| transport protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|301067135|ref|YP_003789158.1| putative permease [Lactobacillus casei str. Zhang]
 gi|116105746|gb|ABJ70888.1| Predicted permease [Lactobacillus casei ATCC 334]
 gi|190713380|emb|CAQ67386.1| Predicted permease [Lactobacillus casei BL23]
 gi|239527608|gb|EEQ66609.1| transport protein [Lactobacillus paracasei subsp. paracasei 8700:2]
 gi|300439542|gb|ADK19308.1| Predicted permease [Lactobacillus casei str. Zhang]
 gi|327383142|gb|AEA54618.1| hypothetical protein LC2W_2287 [Lactobacillus casei LC2W]
          Length = 357

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 104/341 (30%), Gaps = 17/341 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +           +
Sbjct: 5   EKFINNLPVRRTVVLFSVFLLLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHIRPFVI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V   + V+   +   +      + +   L + V             +            
Sbjct: 65  VVPVYILVILGLVYAAVHYVPAIIHQTIGLFNSVQNFYNSEAFANNQVMQWVL------- 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   QS K L+ T     G+  + ++A   G + L   +S I              
Sbjct: 118 --------QSTKSLNLTEQLKTGVTTVLQYAGNIGAMGLTLFVSFILSFFFTIELDSLPA 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                LDS     F       +                IA+   ++         +P+  
Sbjct: 170 FGQLFLDSPFGWYFKDLQ-YFAMKFINTFGVVMEAQIFIAVVNTVITTITLLFLKMPNTP 228

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++++IP    I     ++I     G   +   + +  A    +    L P  +
Sbjct: 229 SLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVLTILIMIAAIHVLEAYVLNPKFM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 289 SSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 329


>gi|78213929|ref|YP_382708.1| hypothetical protein Syncc9605_2421 [Synechococcus sp. CC9605]
 gi|78198388|gb|ABB36153.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 361

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 13/306 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F++   L     F    L+A +I F           +      +  V   +  + L   
Sbjct: 21  AFVLKRLLVQFAPFPGLFLTAALIAFLLDLPCRWLAQR-GLPRAWAIVSVVLVTLGLLGW 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L    + ++ +L+S                            +    S   +    
Sbjct: 80  AAVALVPLLIEQLSQLLSASPSLLTAAEQWIDRAQLWALDHGLPADFADLSSDLVAQFSR 139

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             T L    +  +               ++++ +++   F       I   L       +
Sbjct: 140 LATQLSQRLLGLLGATVGTT--------INVVIVLVLAVFLLLGADPIVDGLARWLPDRW 191

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +   + +  R  F G  ++A+         +    +P  V   V+     ++P 
Sbjct: 192 RDL---VQTTLERTFRGYFAGQVVLALILSGGQLLVFTALKIPYGVLFAVLIGFTTLVPY 248

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            + +S  +VS  L ++ +      L     +   IVD+ ++P L+G  + L        L
Sbjct: 249 ASAVSIVSVSAVLAVQ-DPRTGLELLAAAIVVGQIVDQVIQPRLMGSIVGLQPAWLLIAL 307

Query: 317 VGGVRT 322
             G R 
Sbjct: 308 PIGARV 313


>gi|91215955|ref|ZP_01252924.1| putative transmembrane protein [Psychroflexus torquis ATCC 700755]
 gi|91185932|gb|EAS72306.1| putative transmembrane protein [Psychroflexus torquis ATCC 700755]
          Length = 354

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 136/354 (38%), Gaps = 21/354 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L  Q  +  +I+ +  +    L  + + +L A+        +    + K   + TF 
Sbjct: 5   SPRLVRQLFILLIILSLGGLIFGELLPYISGILGAITFYVLLRGLMRWMLHK-GWNPTFS 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  V+   L +VP+L +      ++   +       +        +  +         
Sbjct: 64  VTVLMVASFILILVPVLGIILMLSSKVSSAIQNSEKVIEAAKAQLVQIETM--------- 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    S   L E    T   D++            +  ++I  M   L++   +  
Sbjct: 115 ---------SGINLGEKIDSTAVTDWLSNNLQGLAGGTFEVFIAISIMYFLLYYMLLNQK 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++  +++          K I++   K +++  +G+ ++A+ +G++    YW+ GVP  +
Sbjct: 166 KLTISMETYIPIDV-ENLKLIAKESAKKVKANAIGIPLVALFQGIISLIGYWIFGVPEAM 224

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              VIT I +MIP     I F  V++ L  +G   +A  + L+G + +   D  +R  ++
Sbjct: 225 FWFVITTIGSMIPFVGTAIGFIPVTLLLYYQGETASAIGVLLYGFVIVGSSDNIVRLLVL 284

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                   L T  G++ GV   G +GL  GP+L++L  ++         E + +
Sbjct: 285 KKMANEHPLITLIGVIIGVPLFGFIGLIFGPLLLSLFLLVVVIYKKEYGEFESE 338


>gi|58616916|ref|YP_196115.1| hypothetical protein ERGA_CDS_01890 [Ehrlichia ruminantium str.
           Gardel]
 gi|58416528|emb|CAI27641.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
          Length = 373

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 126/362 (34%), Gaps = 16/362 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q +   + + +IL++ + ++    P  +A+II +   P+ +     +      L+V+
Sbjct: 8   LVNQYVTYGIAVAVILLAAFIMEPVLIPCCTAIIIAYLLNPLVNKLEKLRLPRQ--LSVL 65

Query: 66  ATVSVMCLFIVP------------LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
             +      I+             LL L  + + ++  +    + +      +  +   I
Sbjct: 66  IILISALYIIIAFLIIFIPITYSQLLSLIKFLIEKIPIVSKNNISSFLQKYNISEYEEII 125

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                        L++     + +        ID I   A    +       +I+  +I 
Sbjct: 126 KAIKLPESSLESLLNYDNIKSLFNIFGTGLKNIDTIFLGAINSSINIGYTVSTILITLIL 185

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+   +  SI +    L          + +  +  +I +   G   + +   +      
Sbjct: 186 LFYILSNWPSIIKHATELIPIKHQKTVIEYTEKIDNIISAYIRGQLSVCLIMAIYYTICL 245

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFI 291
            +  +   + +G+I+ +M  IP   P+  T +S  +  L   N      +     I   +
Sbjct: 246 CIINLKYFLIIGLISGLMTFIPYIGPVFCTTISCIITMLQFNNWTTCGIVIAMFIIGQLV 305

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               + P L+G  I +  +    G++     +G +G+ +   + A++ V  K  I     
Sbjct: 306 ESNVITPLLIGKRIDIHPIWIIIGMIICGSQIGFIGILLSIPITAVVGVFVKSIINQYMN 365

Query: 352 NK 353
           +K
Sbjct: 366 SK 367


>gi|125717110|ref|YP_001034243.1| permease, putative [Streptococcus sanguinis SK36]
 gi|322377490|ref|ZP_08051981.1| putative membrane protein [Streptococcus sp. M334]
 gi|125497027|gb|ABN43693.1| Permease, putative [Streptococcus sanguinis SK36]
 gi|321281690|gb|EFX58699.1| putative membrane protein [Streptococcus sp. M334]
          Length = 298

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 101/301 (33%), Gaps = 6/301 (1%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           K         V+  +S++ + I  L+ +       + +L + +         +       
Sbjct: 4   KAGLRRPIAMVLVFLSLILIVICLLVLVLPTLAQTISQLGAVLSTVLTQLGKLLDS---- 59

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               + ++     +      +  S +      +  +           ++  L I+F  + 
Sbjct: 60  --SEFVTKDMLSTIVSGIQGQSSSISQALITFLSGLTSNIGNIFSSIMNAFLIIVFTFLF 117

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           L          S+ L  +           I ++  +      +   I A+  G+++   Y
Sbjct: 118 LSSKEHLAAMTSRLLKVIFPEKVVTKLTYIGQVALETYDQFLMSQLIEAVIIGVMIAVGY 177

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L G+P  V  G+   +++ IP   P+    V    +   +   A    L   +   I  
Sbjct: 178 SLFGLPYGVMTGIFAGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEG 237

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P +VG  I LP + T      G    GLLG+     + A+I  + KE ++A +   
Sbjct: 238 NLIYPRVVGQSIGLPAIFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQL 297

Query: 354 E 354
           +
Sbjct: 298 D 298


>gi|326798185|ref|YP_004316004.1| hypothetical protein Sph21_0757 [Sphingobacterium sp. 21]
 gi|326548949|gb|ADZ77334.1| protein of unknown function UPF0118 [Sphingobacterium sp. 21]
          Length = 347

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/339 (18%), Positives = 121/339 (35%), Gaps = 20/339 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   +I+ +    LY L+G F  +L+ +I+      +      + +   +  AV+  
Sbjct: 11  RNNITLVIIVVLGAFILYSLRGIFGALLATMIMYTIFRSLNLYLTEQLKWRKSISAVLII 70

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++   + + P   L       + EL        +    + R+L D               
Sbjct: 71  IASFFIIVFPFYGLINMIAKRVIELTKHPDKIQRVIDEINRFLGDKLQQPDLI------- 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      T     G+ +     +       +  L I  M   L+F +       + 
Sbjct: 124 -----------TNNLQRGVAYAGNLMTSILSGAANILLDISVMYFLLYFLFVGCREFEKG 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +             +    +  +  S  LG  +IA+ +G  +   YW+      +  GVI
Sbjct: 173 VLRYSPFS-DENAIRFGVELRNITYSNVLGQGLIAVIQGGAVAFGYWMFDFADPLFWGVI 231

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I++ IP    P+ F    I   I G+ FNA  + LWG + +  +D  LR  +      
Sbjct: 232 CVILSFIPVVGAPMVFIPACIIKFIDGDTFNAIAMLLWGILLVSNIDNVLRLVIAKRVGD 291

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  + T  G++ G+   G++GL  GP+L++   +  K  
Sbjct: 292 IHPIITIVGVIIGIPMFGIMGLVFGPLLLSYFLITVKIY 330


>gi|206579747|ref|YP_002240299.1| hypothetical protein KPK_4500 [Klebsiella pneumoniae 342]
 gi|288937004|ref|YP_003441063.1| hypothetical protein Kvar_4154 [Klebsiella variicola At-22]
 gi|206568805|gb|ACI10581.1| putative membrane protein [Klebsiella pneumoniae 342]
 gi|288891713|gb|ADC60031.1| conserved hypothetical protein [Klebsiella variicola At-22]
          Length = 366

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/346 (14%), Positives = 119/346 (34%), Gaps = 4/346 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ +          F   +L ALI+    +P++  F           +V+  +  
Sbjct: 22  IRFGLILALASFCFTVFSPFINMMLWALILAVALYPLHQYFAGLLAGKQGLASVVLVLLG 81

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L ++P + +          ++ K+   +    P    ++ +P             S  
Sbjct: 82  ILLIVIPTVLMITSLAESASAMIDKMGSQSFTIPPPSSRIAALPIIGERLSALWMRASVD 141

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               + +      +         +  G   + + +S I   I + +      S  +    
Sbjct: 142 LPGLLSNYRSQIGDIAKQFLSILASMGGGLIGFIISFIVSGIMMAWGAAGAISAQRIAIR 201

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           + +        ++       IR+   G+  +A+ + L++G    +A +P+     ++  I
Sbjct: 202 ITDENKGVTLTRL---CTSTIRAVAQGVIGVALIQALLVGVIMLMASIPAVGIFFILALI 258

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +      +        +   G         +    I   + D  L+P L+G  +  P 
Sbjct: 259 LGIAQVPVILVTAPAIALMWSLGTHSTGMDIFYTILLIVAGMADNVLKPLLLGRGVDAPM 318

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                G +GG+ + G+LG+F+G  L+A+   I+   +   +    +
Sbjct: 319 PVVLLGALGGMASNGILGMFLGATLLAIGYRIFMTWVNEGQPALPQ 364


>gi|83643881|ref|YP_432316.1| permease [Hahella chejuensis KCTC 2396]
 gi|83631924|gb|ABC27891.1| predicted permease [Hahella chejuensis KCTC 2396]
          Length = 344

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 97/335 (28%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      I++  +   +   +  L +        P +    SK        A ++ V
Sbjct: 12  RFLITLAAFIIVVAGVKQAESIVSVFLLSAFFAILCTPPFVFLQSKGVP-----AWLSLV 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+       L +       + +    +    +    V     +    +          +
Sbjct: 67  LVLVGITCAQLLVVSVIASSLADFKENLDFYQERLQGVSGEFINWLNSLGIHISQDVVKN 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +                   + + A+           +   +++ + F   +   +  +L
Sbjct: 127 YFN--------------PGSLLKAAANMLGGLGGVLSNAFLIVLTVVFMVFEATVLPNKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               E        +        ++      TII++  GL +       GV   +   ++ 
Sbjct: 173 HRAFEER---MTFERLDFFLDNVKRYMSIKTIISLVTGLTVWVMLLTLGVDYALLWALLA 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I     ++ L +      +A    +   +   ++   + P  +G  + L
Sbjct: 230 FLFNFIPNIGSIIAAIPAVLLALIQLGPGHAAIAGVGYVVINVVMGNIIEPKFMGRGLGL 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L  F  LV     +G +G+ +   L  ++ +  
Sbjct: 290 STLVVFLSLVFWGWVLGPVGMLLSVPLTMMLKIAL 324


>gi|329957164|ref|ZP_08297731.1| hypothetical protein HMPREF9445_02607 [Bacteroides clarus YIT
           12056]
 gi|328523432|gb|EGF50531.1| hypothetical protein HMPREF9445_02607 [Bacteroides clarus YIT
           12056]
          Length = 336

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 134/331 (40%), Gaps = 20/331 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              +  F   +L AL I             K++   +  A I T   +  F+VPL  + +
Sbjct: 24  FRQITPFLGGLLGALTIYILVRRQMIYLSEKRKMKRSIAATIITAEAILCFLVPLALVVW 83

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             ++ ++ +                  +  P  + A       +   ++   +      +
Sbjct: 84  LAVINLQNI------------------NLDPQAIIAPFEEAAAVIKAKTGYNVLGGDSLS 125

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I  +PR           + +++  ++  L+F    G  + + ++ L      A  + +
Sbjct: 126 FIISSLPRIGQTLMGGISSFAVNMFVLVFVLYFMLMGGKKMERYVNELLP-FNEANTQDV 184

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISF 262
              +  ++RS  +G+ ++AI +G V    YW+ G P+ +  G +T   +++P     + +
Sbjct: 185 VHEINMIVRSNAIGIPLLAIIQGGVAMIGYWIFGAPNILFSGFLTGFASVVPMVGTALIW 244

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             ++IY+ + GN F A  L ++GA+ +  +D  +R  +      +  L T FG+V G+  
Sbjct: 245 VPIAIYMALIGNWFQAIGLAIFGALVISQLDNLIRFIIQKKMADIHPLITIFGVVIGLSL 304

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G +G+  GP+L++L  +          + +
Sbjct: 305 FGFMGVIFGPLLLSLFFLFVNMFKKGYLDGE 335


>gi|323489471|ref|ZP_08094698.1| putative permease [Planococcus donghaensis MPA1U2]
 gi|323396602|gb|EGA89421.1| putative permease [Planococcus donghaensis MPA1U2]
          Length = 351

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 104/333 (31%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + +   +I+ ++++   ++     P++ ALI      P  +    + +       + 
Sbjct: 4   LTKKTVTMAIIIAVLILISVYILPVSIPLIVALITAIFLEPFVNFIHKRFKWHRKSAVIS 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + +    L ++    +  + +    V         +                   
Sbjct: 64  VFILFLLVVSALLYWIVTQLIGRIIQFTKMVPEYTNSLSVMWDEFQRFFFRSTKDMPVEV 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S    L    E               S        + +S I  +IALF F  D   + 
Sbjct: 124 VSSFETELVGFMEGIRNWVLSIINYDTVSNLLTGIPSFLVSFIVFLIALFLFMLDLPELK 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L    +       + +   + KVI        +++    +V             + + 
Sbjct: 184 TLLFKRLKDSTAEKVRFMFARLNKVIFGFLKAQFLVSCIIFIVSLITLAFIVPEYALVMS 243

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+  IP    I                         A+ L ++ +T+ P ++G  I
Sbjct: 244 LVIWIVDFIPILGSIIVLTPWFAYEFITGDVVFGTQLAVLALVLLVIRRTVEPKVMGTQI 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            L  L T   +  G++ +G LG FIGP+++ L 
Sbjct: 304 GLSPLATLIAMFIGLQLLGFLGFFIGPLIVILF 336


>gi|58584987|ref|YP_198560.1| permease [Wolbachia endosymbiont strain TRS of Brugia malayi]
 gi|58419303|gb|AAW71318.1| Predicted permease [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 333

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 115/317 (36%), Gaps = 8/317 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              P L+++++ +   P+   F         +  +  T  ++ + I+ + F+     +E+
Sbjct: 1   MVFPCLTSIVVAYLFNPLVIKFEKY-GIPRLYSVIFITFLLLMVLILAVTFILPIIYVEI 59

Query: 90  KE----LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
                 LVSKV   N   I     L +I       +  +K+L+   S  +          
Sbjct: 60  ISILNFLVSKVSSLNPKVIQPVLELLNIKIDNDLFDHLSKNLAENYSDYVSYFINAFNIA 119

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
            +FI +  S    + +     ++   +  F+  RD   I ++++ L    +         
Sbjct: 120 SNFITQMLSSSFSL-IHIVSLVVITPVMFFYILRDWPLIVEKVNKLIPIPYRKKAADYFS 178

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V  ++ +   G   + I           + G+   +A+G+++  +  IP   P  +T +
Sbjct: 179 KVDFIMSNYLKGQANVCIVMTTFYSIGLSIIGLKHSIAIGILSGTLTFIPYIGPSLYTII 238

Query: 266 SIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                       F +  + L   I   I    L P LVG  + +       G+      +
Sbjct: 239 GFLSAATQFSGWFESVAILLLFGIGQLIDTNILAPLLVGKKVHIHPAIIIIGITICASYL 298

Query: 324 GLLGLFIGPVLMALIAV 340
           GL+G+ +   ++A+  V
Sbjct: 299 GLIGILLFVPIIAIFNV 315


>gi|109897240|ref|YP_660495.1| hypothetical protein Patl_0915 [Pseudoalteromonas atlantica T6c]
 gi|109699521|gb|ABG39441.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 346

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 111/362 (30%), Gaps = 19/362 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M   ++  + +++ +    +L+  + + G    F      ++I             K   
Sbjct: 1   MNVKLVAKRALVQAVTTVAVLLFTWLIIGNSKIFLVAFGGILIAVMFSGSARWLAKKTNI 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           ++     I+ ++ + L  + + +       +  ELV ++  A +         S I    
Sbjct: 61  TAKVWLPISMLAPVLLLGLLMTYAAPKISTQANELVDRMPEALEFVRGQFTEFSSIGKFN 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
              +  T +                      +    S      ++   + IF II   F 
Sbjct: 121 DNLDKITNYDPKM----------------STVMNAVSSLLSSTINGFGNFIFAIILAIFL 164

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             +         SL         + + +     +    L      +  GL      W  G
Sbjct: 165 SINPKWYVNGGLSLVPLQHKNKAQDLLKRCETALAGWLLAKLASMVMVGLFTTVGLWALG 224

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +   + LG+I A+++ IP   P+     +  + I   I     + +       +    L 
Sbjct: 225 IDLALILGIIAALLSFIPNLGPLLAFIPAGLVSILTGIDTLLYVSILYVGVQTVESYVLT 284

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           P L      LP        V     +G+ G+ +   L  L+ VI  +  +   +  ++  
Sbjct: 285 PILQAEIASLPPALVLLVQVLLASMVGMAGVLLAAPLTVLLIVITNQLYVKRLQGYKEQD 344

Query: 358 SN 359
           S+
Sbjct: 345 SS 346


>gi|295681027|ref|YP_003609601.1| hypothetical protein BC1002_6230 [Burkholderia sp. CCGE1002]
 gi|295440922|gb|ADG20090.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 357

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 99/323 (30%), Gaps = 15/323 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y  +  F P++   I  +    +                 +     M L    + F    
Sbjct: 23  YIGRAVFVPIVFGAIAVYLVVDLTRLLQRIPVIGPRLPVQLRYGLSMFLIGAAIFFAVDM 82

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     LV+         + +   +S +          +   +    L          N
Sbjct: 83  LVANYDALVALAPRYQDSLLLMIHKISTLLHLESEPTWESLRRNILTQL----------N 132

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    +    + +D  + +++    LF     G  ++            A  + + 
Sbjct: 133 IQAMVTGLLASLSSMIIDLFVIVLYASFLLFERRTFGDKLANMT---ANSTNAARIRGVV 189

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT- 263
             + + I +     T + +  G +   A    G+       ++TA++  +P    +    
Sbjct: 190 IDINRRIGAYLALKTFLGVLLGGLCWLAMRSVGLEFAGLWAILTALLNYVPYIGSVLAVA 249

Query: 264 -AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V + +L  G++ +   + +  +   F++   L P+L G  + L        +      
Sbjct: 250 FPVLMSVLQFGDLNSILVVLVSLSAIHFVIGNILDPYLTGNSLNLSPFAIVASMAVWSAL 309

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G+ G F+   + A + +I+ E 
Sbjct: 310 WGVPGAFLAVPITASMTIIFSEF 332


>gi|239624740|ref|ZP_04667771.1| sporulation integral membrane protein [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521126|gb|EEQ60992.1| sporulation integral membrane protein [Clostridiales bacterium
           1_7_47FAA]
          Length = 357

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 13/339 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK---------KEESSTFLAVIATVS 69
            +     +L    AP L+  I      P       +                +     + 
Sbjct: 20  AVYAGFRYLLPLVAPFLAGYIFALLLRPSARFLAYRMRIHVKGKTFHMPIGVIGGAEFLV 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +    L         E K L+  +                     +           
Sbjct: 80  LISILGTGLYMGAVKLCAEGKMLMMHLPAWIDRFDIWLTGSCHRVETAFGLRYDC-VADL 138

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +        KT  + F+   +         + +  + + +A     ++   +  + D
Sbjct: 139 AGEMLYQLVDTGKTAAMPFLMTNSLTIIACLAKWAIISLVVFLAAILSLQEMEDLRTRRD 198

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                 F   +  I   + +  ++ F    II      +  +  ++ G P ++  G+   
Sbjct: 199 Q---STFRKEFNLIGGRLVQTGKAWFKSQGIILFITTGLCIAGMFIIGNPYYIMAGIGIG 255

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+  +P     +       L +    +    +     +  + V + L   ++GG + L  
Sbjct: 256 ILDALPIFGTGTVLIPWALLELLTGDWKQAVILTGLYLVCYFVRQILEVRMMGGQVGLSP 315

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           L T   +  G+   G  G  +GP+ + L+  + +     
Sbjct: 316 LETLASVYVGLELFGFFGFILGPLGLLLVEDLVEVWNRE 354


>gi|255528013|ref|ZP_05394850.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|255508282|gb|EET84685.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
          Length = 264

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 93/268 (34%), Gaps = 12/268 (4%)

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L +      E   +   +    +    +   L  I        +         +  I 
Sbjct: 3   IFLLIVPSAFKESLNISYTIDKIQKIIDNLYLKLKPISNNKTIYAVMNNVSIKINNQLI- 61

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                       +        +      +SI  + I  ++F  DG +I+ +L +      
Sbjct: 62  -----------SLFSKIFDSALNIGQNIVSIAVIPIISYYFLADGDNIANKLLNFFPINS 110

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               KKIS+ + K++    +   ++    G+V  +      +   + L ++ A   +IP 
Sbjct: 111 RNMVKKISKDIDKILGRYIVSQLLLCAFIGIVTFAILIFLHIDFPIILSILNAFFNIIPY 170

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P+     +I++ +  +   A  + +W  +   I    L P + G  + +  L     L
Sbjct: 171 FGPVFGAVPAIFIALIKSPQKAMWVLIWLYLLQQIEGNILSPKITGDSVNMHPLMVIILL 230

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           V G +  G LG+ +   +  +I VI+++
Sbjct: 231 VVGGKIAGFLGMILAIPVGVMIKVIYED 258


>gi|75760499|ref|ZP_00740536.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491999|gb|EAO55178.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 215

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 76/200 (38%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           SR      +  L +  + + +F+ ++DG +   +  SL    +     +I +   + + +
Sbjct: 12  SRLICYITNVQLVVFTVPVIVFYMFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSA 71

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  ++ I  G      Y +  +P    LG+I A   +IP   P    A ++ + +  
Sbjct: 72  YIQGQALVCIFVGAFTFIGYLIIDLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFV 131

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +   A  + +   I        + P ++   + +  L     ++G     G++G+ +   
Sbjct: 132 SPMQALYVIIIVTIVQQFESNIISPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVP 191

Query: 334 LMALIAVIWKESIMAIKENK 353
           + A+   +    +   K  +
Sbjct: 192 VYAVTKTVVSNLVRLFKTKR 211


>gi|301105477|ref|XP_002901822.1| transmembrane protein, putative [Phytophthora infestans T30-4]
 gi|262099160|gb|EEY57212.1| transmembrane protein, putative [Phytophthora infestans T30-4]
          Length = 468

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/370 (11%), Positives = 101/370 (27%), Gaps = 55/370 (14%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF---------- 51
           R+     +G +    +  +   L + +    P   A+ + +   P+              
Sbjct: 82  RQLAFETKGALLATGLAAMFYLLAWFQAVLIPFFLAIFLMYLVDPLVEVIDVSPRYFLCI 141

Query: 52  -----ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL-VSKVVLANQHGIP 105
                   +  S       A++  + L  V    L Y  +L +  L  S       + + 
Sbjct: 142 CTSHGRHARRTSRGCSRAFASLVAVSLVCVFFGLLGYITVLSVHALDASAYQTGYNNLVS 201

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
               + D                     +I     + T   D + + A       +D   
Sbjct: 202 GVEHILD---------------------QIGLPVNITTTLHDNVDKVARIVVTETMDLLS 240

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            +   +I L +F       S                 +   +   I+        +++  
Sbjct: 241 VMFVTLIYLTYFLCTRTRASDA-------------GGVWSKIDHDIQRFVTLKCFLSLFV 287

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-----GNIFNATC 280
            L++   Y    V   +  G++T I+  IP    +  +   I ++        N      
Sbjct: 288 ALLVTIVYVSLNVGLAIVWGILTFILNWIPNVGAMIASVAPICIIAITPSDLMNPMEKFL 347

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                          + P + G  +++  +     L       G++G+ +   L A   +
Sbjct: 348 AMFLPMCFHMFAGNFVEPKVFGRKLEIDPVIVILSLSAWGLLWGVVGMMLSVPLTAAAKI 407

Query: 341 IWKESIMAIK 350
           +     +  +
Sbjct: 408 MLSHLKLWPE 417


>gi|261408740|ref|YP_003244981.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|329930454|ref|ZP_08283994.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
 gi|261285203|gb|ACX67174.1| sporulation integral membrane protein YtvI [Paenibacillus sp.
           Y412MC10]
 gi|328934832|gb|EGG31322.1| sporulation integral membrane protein YtvI [Paenibacillus sp. HGF5]
          Length = 343

 Score = 98.9 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 118/310 (38%), Gaps = 2/310 (0%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP L A++I     P+    + +   +    A + +   + L ++    +      ++ E
Sbjct: 24  APFLLAIVIAIALEPLNRLLMKRLRLNRIAAATVTSTLFLLLMLLLAYLIGLQVFNQLVE 83

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
             S+            +    I          +  L+   +  + + +    + ++ +  
Sbjct: 84  YWSRAPQYFAGANEFLQH--TIIQAQDMLNGVSPGLADSLTEFMSNISSYVQSLVNSVSS 141

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
               F     +  ++ I   +A++ F     ++ +++ SL +    +   ++   + K I
Sbjct: 142 TFLSFAKTLPNLFVTFIVFCVAVYLFAFSLDTMREKVLSLFDESSQSQVNEVLLSLKKSI 201

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                   I+++   ++      + G+   +A+ ++  I+ ++P     S        L+
Sbjct: 202 FGFLRAQLILSLFTYVITLLGLLVLGINYPLAIALLVTIVDILPILGVGSVLIPWSIYLL 261

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                      ++  I + ++ + L P ++G  + +  LP    +  G + +G++G FIG
Sbjct: 262 AVGDIFTGIGLIFLFILITVIRRVLEPKVIGDAVGIGALPALVSMYVGFKLVGVIGFFIG 321

Query: 332 PVLMALIAVI 341
           P+++ + + +
Sbjct: 322 PLVVIIYSAM 331


>gi|56413554|ref|YP_150629.1| transport protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197362478|ref|YP_002142115.1| transport protein [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127811|gb|AAV77317.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093955|emb|CAR59447.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 344

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 106/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             +      +       +   SI  +++ + F   +   + ++L
Sbjct: 131 ------------------NAAMTLVTNLLTQLPNAMSSIFLLLLTVVFMLLEVPQLPEKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 173 QQM--MSRPVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++     I +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|24215055|ref|NP_712536.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45657464|ref|YP_001550.1| putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196107|gb|AAN49554.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45600703|gb|AAS70187.1| conserved putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 376

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 137/352 (38%), Gaps = 11/352 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATV 68
                + +F I V     + +    L ALI+   +   +        E     +  I   
Sbjct: 18  IFFSILFLFAIGVFFLVFRPYLYSSLMALILYLATRRPHKLLKGYLGEKLQWLVPWIMIT 77

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V  + ++P  F+    + E   ++ K+ ++      +   ++      + ++     + 
Sbjct: 78  LVSMIVLLPSYFVIRTLISEALSILFKLRISLSEDKIIETLMNFALLTDFITDNEFFWVK 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMIIALFFFYRDG 181
            P+     +E ++    +D I    S      L          +++ F ++ LFF Y+DG
Sbjct: 138 VPEIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGILMNLFFALLVLFFLYQDG 197

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + +            +++ R +   +++   G  II+I +G  +    W+AG+ S 
Sbjct: 198 KKVERFILDNLPFS-KQLEEQVGRKLTAAVQTVIRGNLIISILQGTAIYILLWIAGISSP 256

Query: 242 VALGVITAIMAMIPGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                + A  ++IP      +        L ++ N   A      G     +++  ++P 
Sbjct: 257 FLYASLAAFFSIIPVVGTSAVWLPIGLYILFLENNPMMAIFFMGSGLFFYVVLENFVKPR 316

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++   ++   L  F  L+GG++  G++GL +GPV + L+ ++W    +  +E
Sbjct: 317 MLDKKLQAHPLLIFLSLIGGIKEFGIMGLVVGPVTVTLVVILWDFWKLYRRE 368


>gi|325914496|ref|ZP_08176840.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
 gi|325539266|gb|EGD10918.1| putative permease [Xanthomonas vesicatoria ATCC 35937]
          Length = 360

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 105/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PV+ A        PI      K        A++     +
Sbjct: 23  LVVLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGL-RKLYIPRFLGALLVLCLGL 81

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     L       +++   ++    +      + +                     
Sbjct: 82  AGTVTLAAQLAGPAAEWVQQAPRQMRQIARDVRDFTKPMMQANQAAENFARAAGGEGQRG 141

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 142 VQIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 190

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GL+     ++  +P    +  G + 
Sbjct: 191 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLIFAGILYVLQIPLPEALLWGTVV 250

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      +A    +       I  + + P ++G  + 
Sbjct: 251 ALLNFAPYVGPLIGVMLMLLMGFVEFHTPLSAMLPAILYLALHTIEGQVVTPIVLGRRMA 310

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 311 ISPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 346


>gi|307265212|ref|ZP_07546771.1| protein of unknown function UPF0118 [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919834|gb|EFN50049.1| protein of unknown function UPF0118 [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 256

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 90/264 (34%), Gaps = 9/264 (3%)

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E+   V  +    +    +   L          +       +  +L  L  + +   
Sbjct: 1   MINEIVIFVKMIPFYTEELQKILIQLKFNYFSYLPPQFEKVLDKNLNALNNLFASRVDLV 60

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +           L   + +I + I  F+  +D     ++++ +    +   +  + 
Sbjct: 61  FKSTVA---------ILKDIIDVIIVPIITFYLLKDKNVFEKEIERMIPSKYHDSFFALL 111

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           + + K++         ++I   +       L  V     +G++  I+ +IP   PI    
Sbjct: 112 KKIDKILSKYIRAQIYLSIFVAIFTSIGLSLIKVKYAFLIGILAGILNIIPYIGPILSII 171

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            ++ + +  ++       L   +   I +  + P ++   + L  +   F L+ G    G
Sbjct: 172 PAVLIGLLDSLSKGFWALLVCLLVQQIENAFITPKIISDSVGLHPITVIFSLIAGEELFG 231

Query: 325 LLGLFIGPVLMALIAVIWKESIMA 348
           + GL +   ++A+  VI  E  + 
Sbjct: 232 VWGLLLSVPVVAIGKVIVTEIFIE 255


>gi|258509137|ref|YP_003171888.1| permease [Lactobacillus rhamnosus GG]
 gi|258540340|ref|YP_003174839.1| permease [Lactobacillus rhamnosus Lc 705]
 gi|257149064|emb|CAR88037.1| Permease [Lactobacillus rhamnosus GG]
 gi|257152016|emb|CAR90988.1| Permease [Lactobacillus rhamnosus Lc 705]
 gi|259650424|dbj|BAI42586.1| putative transporter protein [Lactobacillus rhamnosus GG]
          Length = 358

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 104/341 (30%), Gaps = 17/341 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I  F    +  +           +
Sbjct: 5   EKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHVRPFVI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V   + V+   I   +      + +   L + V             +            
Sbjct: 65  VVPVYILVILGLIYAAVHYVPAIIHQTITLFNSVQDFYNSDAFANNQVMQWVL------- 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   QS K L+ T     G+  +  +A   G + L   LS I              
Sbjct: 118 --------QSTKSLNLTEQLKTGLSTVLEYAGNIGAMGLTLVLSFILSFFFTIELDSLPA 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                LDS     F    +  +                IA+   ++         +P+  
Sbjct: 170 FGQLFLDSPFGWYFKDL-RYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMPNIP 228

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++++IP    I     ++I     G   +   + +  A    +    L P  +
Sbjct: 229 SLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNPKFM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 289 SSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 329


>gi|116334605|ref|YP_796132.1| permease [Lactobacillus brevis ATCC 367]
 gi|116099952|gb|ABJ65101.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 363

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 93/341 (27%), Gaps = 17/341 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  +    + R+ ++ +I+  L+ ++     +L   I  F    +  +     +     +
Sbjct: 5   QRFVENVQLRRFTVLALIIFVLWLIRAEMNMILLTFIFTFLVLQLVKAVRRVVKLPPALI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  V ++ L    +       +      +  +    Q        +         +  
Sbjct: 65  VTVTYVVIIGLLYWAVTTYLPQILTSSIHGIENLYKFYQDPKNNSNEIISYVTNYIKTSD 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L +   L +   + + + G+         F        ++          +     
Sbjct: 125 IVNQLQNGAKLVLTYVSTIGSFGVTLFMSMILSFFFTIESKQMAAFSKRFLTSTYGWFFE 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I+                                   IA+   ++      +  +P   
Sbjct: 185 DINFFATKFV----------------NTFGVVLEAQFFIALCNTVITTIVLAIMQMPQLP 228

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  I+++IP    I        L    G       + +   +   +    L P  +
Sbjct: 229 TLAIMIFILSLIPVAGVIVSIIPLAILGYSVGGFRYIVYILVMIVVVHALEAYVLNPKFM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G +  G+ GL +G  +      I 
Sbjct: 289 SSRTELPIFYTFVVLLAGEQLFGVWGLIVGVPIFTFFLDIL 329


>gi|126657822|ref|ZP_01728975.1| hypothetical protein CY0110_13196 [Cyanothece sp. CCY0110]
 gi|126620762|gb|EAZ91478.1| hypothetical protein CY0110_13196 [Cyanothece sp. CCY0110]
          Length = 343

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 92/307 (29%), Gaps = 10/307 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I    L+ ++     V +A++       +        +    +  +I  ++++ L I+
Sbjct: 12  LIISGYILWQIRQVLLLVFTAVVFATALNRLVKWLEQ-FKIRRNWGIIIVVITIIILAIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +    + + ++L++ +    +        LS+                    L   
Sbjct: 71  FAWLVVPPFIDQFEKLLALLPTVWERLRTNLISLSETQSRFDWLPKPPTLSDVLTRL--- 127

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  I           L   L ++F+                    L    +
Sbjct: 128 ------QPLLTDIFANFFTVFSNSLAIILQVVFVFFLTITMIIQPQRYRHLFLKLFPSFY 181

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                +I  +    + +   G+TI     G++ G   WL  V   +   ++  ++  IP 
Sbjct: 182 RKRGDEILTLSEVALGNWLTGVTINCFFIGILSGVGLWLLQVKLVLVHALLAGLLNFIPN 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     + + +  N +    + +W  I   I    L P ++   + L    T    
Sbjct: 242 VGPATSVVFPLMVALLDNPWKIWAILIWYFIIQNIESYWLTPTVMAKQVSLLPAVTLVAQ 301

Query: 317 VGGVRTM 323
           +   +T 
Sbjct: 302 IFFAQTF 308


>gi|16331348|ref|NP_442076.1| hypothetical protein slr0784 [Synechocystis sp. PCC 6803]
 gi|1001519|dbj|BAA10146.1| slr0784 [Synechocystis sp. PCC 6803]
          Length = 340

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/320 (8%), Positives = 86/320 (26%), Gaps = 11/320 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M+     +    + +     + ++     +  A+++      +     +           
Sbjct: 1   MMKLSQWLGLACLAMAAYVAWEIRQLLLLLFLAIVLSTALNRLVKQLQTW-GIKRPLALA 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  ++V    ++  L +      +++ L+  +               D     + S+   
Sbjct: 60  ITLITVTVAVVLFFLLVIPPFWEQLQILIGSLPKVGDRLENFFEDWHDRMEVKFFSQ--- 116

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  +  +       +                 +   L IIF++           + 
Sbjct: 117 -------AFSVDDLPDSISALGANALSSLINLFSNSVTAVLQIIFILAIAVMMLLSPQAY 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q    L    +     +I       + +   G+ I +     + G   W+  +   +  
Sbjct: 170 RQGTLKLFPSFYRRRADEILTQSESSLGNWLTGIVINSFFIASLSGIGLWILQIKLVLVH 229

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++  I+  IP   P +     + + +    +    + +   +   +    L P ++   
Sbjct: 230 ALMAGILNFIPNIGPAASVVFPLMIAVLDAPWKIIAVLILYFLIQNVESYWLTPIVMAKQ 289

Query: 305 IKLPFLPTFFGLVGGVRTMG 324
           + L    T    +      G
Sbjct: 290 VSLLPAVTLIAQLFFASIFG 309


>gi|254560627|ref|YP_003067722.1| hypothetical protein METDI2170 [Methylobacterium extorquens DM4]
 gi|254267905|emb|CAX23771.1| conserved hypothetical protein, putative permease [Methylobacterium
           extorquens DM4]
          Length = 390

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 36/345 (10%), Positives = 93/345 (26%), Gaps = 24/345 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + S ++       +             +   IA++ +  L +    F       + ++L 
Sbjct: 45  IFSGILFAVFLDGVTRGLGYVLPIGRGWRLAIASLVLAALALGLTAFGGATVASQARDLG 104

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT---------- 143
           + V   ++      +           +          +     +                
Sbjct: 105 TTVRQQSETVRDWLKERGVEIDLSQGAPAEAGPGGEGKDTGKDTGKDAGKDKNEKEGGLA 164

Query: 144 --------------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         +    +   A+   +   +   +++ ++        D  S      
Sbjct: 165 GLASGALKSPGSLLSDAGSVLGPAATVVIALFNALGNVLVIVFLGVAIAADPGSYRDGAL 224

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L          ++     + +R    G  +      ++  +     G+   + LG+   
Sbjct: 225 RLVPPRHREKGARVLDGSGETLRHWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQAG 284

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++A +P   P+    V +   +   +                    L PF+    + LP 
Sbjct: 285 LLAFVPTIGPLIAGVVIVLSSLASGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDLPA 344

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              F G +      GL G+ +   L+A+I V+ +E  +      E
Sbjct: 345 ATIFAGQLLLGVLFGLWGVALALPLVAVIKVLLEELYIEDGAEAE 389


>gi|257872535|ref|ZP_05652188.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257806699|gb|EEV35521.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
          Length = 366

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 114/338 (33%), Gaps = 11/338 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I+F+           F PVL ++ I +   P ++    + +   +       + ++    
Sbjct: 29  ILFVFRPLEAIFSSVFLPVLISIFIFYIFLPFFNWVKRRTK-KKSIALYATLLLIVFAAY 87

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  +      EM   ++++ +     I               S L         S+ I
Sbjct: 88  LIIQVIGPALAYEMGRFINQIPVIINLVIDNINH----------SYLEELFGPFIDSIDI 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              +      I       +    I     + +  + + L + ++DG  +   L +     
Sbjct: 138 SQASNFALQFITGATNRLTSLISIVSHSAIVLFTIPLLLVYMFKDGEKVPDFLANKTPKK 197

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    +++     +   +   G  ++     +     + L G+ + + LG+I  ++ +IP
Sbjct: 198 YQGLMRQLCSDFHQAASAYIGGKLLVCSYVAVSSYLIFSLLGLQNALLLGLICGVLDIIP 257

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    A +    +  +I  A  L +   I        + P ++   + +  +   F 
Sbjct: 258 YFGPFIGAAPAFLFALSLDIRTAILLVVGITIIQLGESYLVSPLVMNKVLHIHPIIAVFL 317

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L+     +G +G+ +   + ++I  +    +   +E K
Sbjct: 318 LLIAGNLLGFVGMIVALPVYSIIMAMSGTLLRFFQERK 355


>gi|261493722|ref|ZP_05990240.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261494544|ref|ZP_05991028.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261309793|gb|EEY11012.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261310612|gb|EEY11797.1| putative membrane protein [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 342

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/316 (13%), Positives = 99/316 (31%), Gaps = 19/316 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              P L +L I     P+      +K         +A   ++ +FI+   FL       +
Sbjct: 19  IVVPFLLSLFIAIICSPMIKFMTKRKVP-----LWLAITILLIVFILGFSFLAGIINNTL 73

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +E  + +           + + ++                   L +  E  +       I
Sbjct: 74  QEFTNAIPQYKIQLSSRIQVILEL------------AHRWHIPLTLSQEEIMSKFDPSSI 121

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-DSLGEHLFPAYWKKISRIVP 208
               S+  M       +I  + + + F   +      +L  +L      +  K+    V 
Sbjct: 122 MNLVSKLLMGLSGALSNIFVIFLVVIFMLLEMPVAKYKLALALSPDDDLSNEKEYINQVL 181

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +       T +++  G ++     + GV   +   ++T ++  +P    I      + 
Sbjct: 182 EGVIGYLGVKTFVSLLTGGLVWILLEILGVEYAILWAILTFLLNYVPNIGSILAGIPIVI 241

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L+           +   +   +V   L P L+G  + L  L  F  L+     +G +G
Sbjct: 242 QALVLNGFSIGLGTLIGIVVINMVVGNALEPKLMGKKLGLSTLVVFLSLLFWGWLLGTVG 301

Query: 328 LFIGPVLMALIAVIWK 343
           + +   L     V  +
Sbjct: 302 MLLSVPLTMACKVALE 317


>gi|204927440|ref|ZP_03218641.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322782|gb|EDZ07978.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 344

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 112/337 (33%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+       +        VIA +
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMTRCRIPR-----VIAVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + ++ ++ L  Y    + EL   +       +   + +          E W +   
Sbjct: 67  LLIVIIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRI----------EPWLQRAG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+  L++       +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 117 IGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 177 SR------PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    +      I  +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|227537967|ref|ZP_03968016.1| permease [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242043|gb|EEI92058.1| permease [Sphingobacterium spiritivorum ATCC 33300]
          Length = 353

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 118/345 (34%), Gaps = 17/345 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M++ +  P  I    I+  I++  Y  +       P++  ++      P+ +    K   
Sbjct: 1   MQKFISLPFYIKLACILISIVILGYLARIGDTIIVPLILGILFAMLLTPLSTLLEKKLRF 60

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
             T   ++  V         L  L     +  ++  +           V  W++   G  
Sbjct: 61  PRTLAGIVCIVLFFGGLATGLYLLASQLSMLQEDWPAFKHQILDGVEVVQDWVNHQFGIQ 120

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
           +             + ++       +  +D          M      + ++F  +  FF 
Sbjct: 121 Y-------------NEQMNLLNKTASKSVDSGTLILGTALMSLSSIAIFLVFTFLYTFFI 167

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
                 I + L  L          +I   V  V++   +G+ +  +    ++  A  + G
Sbjct: 168 LIYRGHIVRFLLYLNAKEDHPVVLEIVAEVQYVVKRYLIGLLLQMLIVTTLVYIALAIIG 227

Query: 238 VPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   + L +IT +  ++P     S    V++         +   +F+  +I   I    +
Sbjct: 228 VKYSLLLAIITGVFNVLPYIGIFSSMFIVALITFATSTFSHVLFVFVAMSIIHMIDSNVI 287

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            P +VG  +K+  L     +V G    G+ G+F+   L+A++ ++
Sbjct: 288 VPKVVGSKVKINSLFAMMAIVCGELIWGISGMFLAIPLLAIVKIV 332


>gi|16760382|ref|NP_455999.1| transport protein [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|16764826|ref|NP_460441.1| transport protein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|29141854|ref|NP_805196.1| transport protein [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|167994459|ref|ZP_02575550.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168229860|ref|ZP_02654918.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168241001|ref|ZP_02665933.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168260355|ref|ZP_02682328.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168463103|ref|ZP_02697034.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194443521|ref|YP_002040728.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451154|ref|YP_002045517.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469032|ref|ZP_03075016.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197264890|ref|ZP_03164964.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198243169|ref|YP_002215658.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200390120|ref|ZP_03216731.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|207857018|ref|YP_002243669.1| transport protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|213646062|ref|ZP_03376115.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|238911713|ref|ZP_04655550.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289809740|ref|ZP_06540369.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
 gi|289823744|ref|ZP_06543356.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|25325145|pir||AH0682 probable membrane protein STY1587 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420000|gb|AAL20400.1| putative membrane transport protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16502677|emb|CAD01833.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29137482|gb|AAO69045.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194402184|gb|ACF62406.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194409458|gb|ACF69677.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194455396|gb|EDX44235.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|195634503|gb|EDX52855.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197243145|gb|EDY25765.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197937685|gb|ACH75018.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199602565|gb|EDZ01111.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205327680|gb|EDZ14444.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205335409|gb|EDZ22173.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205339314|gb|EDZ26078.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205351272|gb|EDZ37903.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|206708821|emb|CAR33149.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261246682|emb|CBG24492.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267993377|gb|ACY88262.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158011|emb|CBW17506.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|321224097|gb|EFX49160.1| Putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|322616099|gb|EFY13015.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620548|gb|EFY17410.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322622949|gb|EFY19791.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322628744|gb|EFY25529.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631454|gb|EFY28212.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638789|gb|EFY35484.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322641046|gb|EFY37690.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646589|gb|EFY43097.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649046|gb|EFY45487.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654560|gb|EFY50881.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658672|gb|EFY54930.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665195|gb|EFY61383.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322667939|gb|EFY64099.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322671649|gb|EFY67770.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322677304|gb|EFY73368.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322680032|gb|EFY76071.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685538|gb|EFY81534.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323129748|gb|ADX17178.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323191877|gb|EFZ77124.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198165|gb|EFZ83274.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203333|gb|EFZ88359.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323205648|gb|EFZ90611.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323214085|gb|EFZ98848.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217318|gb|EGA02038.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221938|gb|EGA06330.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223609|gb|EGA07922.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232193|gb|EGA16299.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323234364|gb|EGA18451.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237815|gb|EGA21874.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242621|gb|EGA26642.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249646|gb|EGA33557.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254461|gb|EGA38275.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255967|gb|EGA39707.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260993|gb|EGA44589.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266703|gb|EGA50190.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272256|gb|EGA55667.1| pheromone autoinducer 2 transporter [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326623403|gb|EGE29748.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 344

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 104/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 131 --------------NAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 177 SR------PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++     I +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|28209877|ref|NP_780821.1| hypothetical protein CTC00106 [Clostridium tetani E88]
 gi|28202312|gb|AAO34758.1| conserved membrane protein [Clostridium tetani E88]
          Length = 351

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 103/314 (32%), Gaps = 5/314 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P + A I              K    ++  + I T+    + I  L F     + E  +
Sbjct: 33  LPFVLAFIFSLILKKPTEFLTKKFSIKNSLSSFITTLIFFTIIIFLLYFSVTSIVKEGID 92

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE--TFLKTNGIDFI 149
           L     +   +     +         + +       +   +L  +    +         +
Sbjct: 93  LGKNTQIYLSNNSENIKTFLKNLEKYYYNLDPDILKTISNNLLTMLSKLSNYTVVITTKL 152

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            +             + I F +I+ +FF +D  S   +L S+  +        I     K
Sbjct: 153 VQITISLLSYIPYIFMLIFFTLISTYFFTKDLSSAKNKLFSIIPNDKSDKISNIFNESKK 212

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY- 268
           ++ +  L   II +   +     + +  V   + L +I AI  ++P     S        
Sbjct: 213 LLVNYALSYLIIILITFVETLIGFLVLRVNYAIILSIIAAIFDILPILGIGSVYIPLALV 272

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L IK + F A  + +W  +   I+ + L P +V   + +  +     +  G++  G+ G
Sbjct: 273 NLFIKKDYFTAIGVLIWYLVV-TIIRQILEPKIVSSSLGMHPISILAAIFIGLKAAGITG 331

Query: 328 LFIGPVLMALIAVI 341
           +F    L+    V 
Sbjct: 332 MFFCIFLVVFYKVF 345


>gi|88855233|ref|ZP_01129898.1| membrane protein [marine actinobacterium PHSC20C1]
 gi|88815761|gb|EAR25618.1| membrane protein [marine actinobacterium PHSC20C1]
          Length = 353

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 106/324 (32%), Gaps = 17/324 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I  ++  L      V +AL +     P+ S    K +       +   V V+ +F   + 
Sbjct: 23  IGQTIISLATILTYVGAALFLALGLDPLVSWLEKK-KFPRWTAILTVLVGVLGVFTGLVF 81

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +      +++   + +                  G +  +   T    + Q L     T
Sbjct: 82  AIVPVIAEQVRNAANAIPRLVTALFD---------GTIRENVETTFPWLNVQELLDGFTT 132

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           ++       I       G+         I ++I   +F     +I   +  L      A 
Sbjct: 133 WVTELDFTTIGGGVFAVGIGIATGITGGIIVLILTIYFVSSLNNIKSGIYQLVPATKRAK 192

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG------VPSHVALGVITAIMAM 253
           +  ++  V   +    +G   +A+  G++      L        V     L  I  + ++
Sbjct: 193 FIDLAEQVSNAVGRYVIGQGSLALVNGVLSFIVLTLIFPAFDLPVKYSALLAFIAFMGSL 252

Query: 254 IPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP    +S    +++ +L+     +   + ++  I + I    L P ++   +KLP    
Sbjct: 253 IPLVGTLSGSVVITLLVLLFNGPPSVVAVGIYYLIYMQIEAYLLNPRIMSRAVKLPGALV 312

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMA 336
               + G   +G+LG  I   + A
Sbjct: 313 VIAALAGGTLLGILGALIAIPVAA 336


>gi|159026346|emb|CAO86435.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 347

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/338 (14%), Positives = 105/338 (31%), Gaps = 32/338 (9%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLS----ALIIGFTSWPIYSSFISKKEESSTF 61
           LN   ++R++++F    SL  L  +F  +++    + I+                     
Sbjct: 11  LNNSILVRYLLLFGCGWSLIILINYFYGIIAIFTGSAILAALLNYPVVWLSRYL--PRGL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I T+    L    +  +    + + K L+  +  A                      
Sbjct: 69  AIAITTIVAFILLFRLVTGIGLEAVSQGKGLLFNLTDA---------------------- 106

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  +     +      +       +                   + +F  +   +   DG
Sbjct: 107 LGQQDFLPFKDFLDRLDLNKMVGTLQTGLATGLSIVQGVFSSVFTGVFGAVISVYMLIDG 166

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    L    +   + K      +       G  ++ +   +    ++ L G+   
Sbjct: 167 DKLWRGFLQLLPPAYRERFAK---SFRQSFLGFIRGQLLLMLFLSVTSFLSFSLLGIQYG 223

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L  I  ++  IPG        +   L      +  A   F+   + + I D  +RP +
Sbjct: 224 LILAGILGVIDAIPGIGATLGILLVTILTFTSQGLTIAVKAFIVCVVLVQIQDNIIRPKV 283

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           +G  ++L  +  F  L  G R  GLLG+F+   +  +I
Sbjct: 284 MGNALELNPVILFLSLFIGERIAGLLGVFLSIPIAGMI 321


>gi|297571682|ref|YP_003697456.1| hypothetical protein Arch_1124 [Arcanobacterium haemolyticum DSM
           20595]
 gi|296932029|gb|ADH92837.1| protein of unknown function UPF0118 [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 376

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/330 (15%), Positives = 102/330 (30%), Gaps = 9/330 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++  I++ L  +   F  V  A ++     P  +               +A +S   LF
Sbjct: 41  IVISAIVLILGSVYQVFLGVFLAFVLTAVLLPAVNWLSH--FMPRALATAVAVISGFALF 98

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              + ++    + E  +L  +      + + +         G     L    +    S  
Sbjct: 99  GGLIAYVVSSILHEWNDLARQFSHGVDNIMRLLT------DGSLPFTLERSQVFDVLSKA 152

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +   T    N    I +  +            +   +    F    G S+     +L   
Sbjct: 153 LQQGTQYAQNHAGEIAQTVASNASQVAIILTILALAVFITVFLLASGASMWAWFIALLPS 212

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                    +            G  IIA+  G +     WL  +P    L V+  +   +
Sbjct: 213 RKQERVNAAAEAGWTAFSGYAAGTVIIAVTNGGLSFIFLWLLDLPLAAPLAVLVMLGTFV 272

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P    PI+        L    +     + L  A    I    L+P ++G  + +  +   
Sbjct: 273 PLVGAPIAMFVAMFVGLATDGLSMFIIIGLGIAGIGQIEGHLLQPLIMGKKVSVHPVAVA 332

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            G+  G    GL+G  I   L+A+I  +++
Sbjct: 333 VGVSAGGFAGGLMGAVIAIPLIAVIWSVFR 362


>gi|73666828|ref|YP_302844.1| hypothetical protein Ecaj_0196 [Ehrlichia canis str. Jake]
 gi|72393969|gb|AAZ68246.1| protein of unknown function UPF0118 [Ehrlichia canis str. Jake]
          Length = 373

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/361 (17%), Positives = 136/361 (37%), Gaps = 14/361 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + + R +I+ II+++++ +K  FAP  SA+I+ +   P+ +   +    S  F   +
Sbjct: 8   LIDKYVTRGVIILIIILAIFIIKPVFAPCCSAIIMAYLLNPLVNKLQN-IGLSRQFSVAV 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKE----LVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +S +C+ I  L+        ++      L+ ++ L ++  I       +I      S 
Sbjct: 67  ILLSSVCIIIAFLISFIPIAYSQLLSLVRFLIERIPLIHKDSITAFLQKYNIVEYEEVSN 126

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMIIAL 174
           +        ++L            +  I +         ++           I+   I L
Sbjct: 127 VMRLSQLSFENLLSYENIKPLIGVLVGILKSLDNILFGAINSSISISYTVSIILITPILL 186

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           F+   +  SI +  +SL    + +  K  +  + K+I +   G   +    G+       
Sbjct: 187 FYILCNWPSIVEYSNSLIPVKYQSVAKLYTERIDKIISAYIRGQLSVCFIMGIYYTICLS 246

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIV 292
           L  +   + +G I+ IM  IP   PIS   +S  +  L   +      + +   I   + 
Sbjct: 247 LIKLKYFLIIGFISGIMTFIPYVGPISCVVLSFVITMLQFNSWTICGIVLVMFIIGQLVE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              + P L+G  I +  +    G++     +G  G+ +   + A++ V  K  I     +
Sbjct: 307 SNIITPLLIGKSIDIHPIWIIIGMITCGSQIGFTGILLSIPITAIVGVFVKSFISYYMGS 366

Query: 353 K 353
           +
Sbjct: 367 E 367


>gi|21910312|ref|NP_664580.1| hypothetical protein SpyM3_0776 [Streptococcus pyogenes MGAS315]
 gi|71910652|ref|YP_282202.1| hypothetical protein M5005_Spy_0839 [Streptococcus pyogenes
           MGAS5005]
 gi|21904508|gb|AAM79383.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
 gi|71853434|gb|AAZ51457.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS5005]
          Length = 375

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 111/338 (32%), Gaps = 13/338 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P        +    + S++               +       ++A ++   L    +  
Sbjct: 40  LPFFYGAAGAYIVNIVMSAYEKVYVYIFKDWSHVLKVKRGICLLLAYLTFFILITWIISI 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L     +  Q  +        +   +       K      +        
Sbjct: 100 VIPDLITSISTLTKFDTITIQEVVNNLEHNKLLARTIQYIGGDGKLTETIANYSQQLLKQ 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T   + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 160 FLTVLTN-ILTSVTVIASAIINLFISFVFSLYVLASKEDLCRQGNTLVDTYTG-KYAKRI 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++ +     F+  T+ A+  G +  S  ++  +P    +GV+ A  A+IP     
Sbjct: 218 HYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLPFAGTIGVLVAFTALIPVIGAS 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 278 IGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPKVVGGSIGLPAMWVLMAITIGA 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++G+ I   L A +  + K++I   +  ++K  S
Sbjct: 338 SLKGIVGMIIAVPLAATLYQVIKDNIQKRQAIQKKQVS 375


>gi|57238926|ref|YP_180062.1| hypothetical protein Erum1930 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578859|ref|YP_197071.1| hypothetical protein ERWE_CDS_01950 [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161005|emb|CAH57911.1| putative integral membrane protein [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417485|emb|CAI26689.1| Conserved hypothetical protein [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 373

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/362 (14%), Positives = 126/362 (34%), Gaps = 16/362 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q +   + + +IL++ + ++    P  +A+II +   P+ +     +      L+V+
Sbjct: 8   LVNQYVTYGIAVAVILLAAFIMEPVLIPCCTAIIIAYLLNPLVNKLEKLRLPRQ--LSVL 65

Query: 66  ATVSVMCLFIVP------------LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
             +      I+             LL L  + + ++  +    + +      +  +   I
Sbjct: 66  IILISALYIIIAFLIIFIPITYSQLLSLIKFLIEKIPIVSKNNISSFLQKYNISEYEEII 125

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                        L++     + +        ID I   A    +       +I+  +I 
Sbjct: 126 KAIKLPESSLESLLNYDNIKSLFNIFGTGLKNIDTIFLGAINSSINIGYIVSTILITLIL 185

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LF+   +  SI +    L          + +  +  +I +   G   + +   +      
Sbjct: 186 LFYILSNWPSIIKHATELIPIKHQKTVIEYTEKIDNIISAYIRGQLSVCLIMAIYYTICL 245

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFI 291
            +  +   + +G+I+ +M  IP   P+  T +S  +  L   N      +     I   +
Sbjct: 246 CIINLKYFLIIGLISGLMTFIPYIGPVFCTTISCIITMLQFNNWTTCGIVIAMFIIGQLV 305

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
               + P L+G  I +  +    G++     +G +G+ +   + A++ V  K  I     
Sbjct: 306 ESNVITPLLIGKRIDIHPIWIIIGMIICGSQIGFIGILLSIPITAVVGVFVKSIINQYMN 365

Query: 352 NK 353
           +K
Sbjct: 366 SK 367


>gi|254456848|ref|ZP_05070276.1| integral membrane transport protein [Campylobacterales bacterium GD
           1]
 gi|207085640|gb|EDZ62924.1| integral membrane transport protein [Campylobacterales bacterium GD
           1]
          Length = 343

 Score = 98.5 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 108/335 (32%), Gaps = 23/335 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            + +  + I+L  +        P L AL I     P Y+ F  K   +      ++ V V
Sbjct: 10  FIVFASVIIVLAGIKSATAIVIPFLLALFIAIILSPSYNYFNKKGLPN-----GLSLVLV 64

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F++ L  +        +E  S +    Q        ++++   +       +  S  
Sbjct: 65  ITIFVIFLASVAKLIGTSAQEFSSNIGSYEQQLSGSFHKITEMAVSLGIELPEEEITSII 124

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
              +I+  T     GI  +        +  +   L                      +  
Sbjct: 125 NPKQIMQLTSGIVQGIGSMFTNGFVILLSVVFMLLESG-----------------HFVSK 167

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +             + +   I+   +   +I+I  G V+  A    G        V+  +
Sbjct: 168 ITHATNDNRAISNIQEIISKIKRYMVLKALISIFTGFVIWIALLFVGTDYAFLWAVLAFM 227

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP    I     ++ L LI+    +A  +         I+   + P ++G  + L  
Sbjct: 228 LNFIPNIGSIIAAVPAVLLTLIQLGSVSALIVSAIYVGVNIIIGSVIEPKIMGRGLGLST 287

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  F  L+     +G++G+ +   L  +  ++  E
Sbjct: 288 LVVFLSLLFWGWLLGIVGMLLSIPLTMMAKIVLDE 322


>gi|71281300|ref|YP_269031.1| hypothetical protein CPS_2311 [Colwellia psychrerythraea 34H]
 gi|71147040|gb|AAZ27513.1| putative membrane protein [Colwellia psychrerythraea 34H]
          Length = 354

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 103/333 (30%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    +FII   +        P L ++ I     P+ +     K   +  +  +  V
Sbjct: 12  KAFVTVAAIFIIFAGIKTAANILVPFLLSVFIAIICNPLINKASEYKIPKAVSVIFVIVV 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V         FL       + EL  ++            WL+            +    
Sbjct: 72  FVTMAV-----FLTGLVGSSLNELSQQIPQYRIQLKEQFTWLTSFLNSHDIQLSSSIVTE 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +                +       S FG +  +  L I+ ++  LF        +   L
Sbjct: 127 YFD----------PAAAMGLAADMLSSFGSVMTNLFLIILTVVFMLFESSTIPHKLHLAL 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D       P             +       T+++I  G ++    W+ G+   +  GV+ 
Sbjct: 177 D------DPQMRLNQIERFLSSVNQYIAIKTLVSIATGCIVSLMLWIFGLDFFLLWGVLA 230

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    I          +++ +I  A  + L   +   ++   + P  +G  + L
Sbjct: 231 FLLNYIPNIGSIIAAVPPMTLAILQLSIGEAGAIGLGFVLINMVMGNIIEPRYLGKGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             L  F  L+     +G +G+ +   L  ++ +
Sbjct: 291 STLVVFLSLIFWGWLLGTVGMLLSVPLTMILKI 323


>gi|21228979|ref|NP_634901.1| hypothetical protein MM_2877 [Methanosarcina mazei Go1]
 gi|20907519|gb|AAM32573.1| hypothetical protein MM_2877 [Methanosarcina mazei Go1]
          Length = 347

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 127/349 (36%), Gaps = 7/349 (2%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               +  ++I+ +  V +Y +  +   +    I+  T  P+Y   + K   +    A++ 
Sbjct: 5   VRTALALFLIVALSAVIIYAIFPYVDYLFGGFILFITFKPLYRFLLKKTRLNRQVSALLV 64

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            +  + L ++PL FL    ++E+++++              R  ++       SE   + 
Sbjct: 65  IIISIFLVLIPLFFLLSMVIIEIQQILLNQEAIMATIEVGDRLFNNFFSRFGISENIFQI 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                         L T  I+F+               + ++ M    ++      S   
Sbjct: 125 N------FEERVMDLATQIINFLSLLVVGSIQSISHRAIGLLIMYFLFYYLLTGEESDFM 178

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q   L           +      ++R+T +    IA+ EG +L  ++ + GV      G 
Sbjct: 179 QNLFLAIPFNTKNTVILLNEFRNIVRTTLIASGAIAVIEGGILIVSFLIFGVQGAFLWGS 238

Query: 247 ITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I A+++ +P    PI +    I   ++ +   A  + + G           RP +     
Sbjct: 239 IAAVLSFLPVVGTPIIWIPAVIIQFLQQDYVAAAGILITGIFLSVSDSSFFRPVIQKKVG 298

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           K+    +  G+  G+   GL+G+ IGP+L+A   +  K        +KE
Sbjct: 299 KIHPFQSLLGIFIGIPLFGLVGIIIGPLLLAYFYLTVKMFSEEYLSDKE 347


>gi|109900570|ref|YP_663825.1| hypothetical protein Patl_4272 [Pseudoalteromonas atlantica T6c]
 gi|109702851|gb|ABG42771.1| protein of unknown function UPF0118 [Pseudoalteromonas atlantica
           T6c]
          Length = 374

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 106/352 (30%), Gaps = 20/352 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
             W++   +L +LYF +    P++   +I     P+ ++              ++   ++
Sbjct: 16  AVWLLFLGVLYTLYFTQSLLMPLVVTSLIALLLSPLVAALQGLHIPR-----TVSAFLLV 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I P  FL        ++    V    QH       +SD   G   S L  K      
Sbjct: 71  STLIAPFTFLGAELAEPAQKWAKLVPELTQHVTEQLDSISDAMEGENESNLPAKADDEEF 130

Query: 132 SLK------------ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S                 E  +                         ++  +I   F   
Sbjct: 131 SFFGLFKNKAEQRPVEKDENVMSQRLKQGGLEIMLSVLSSTPLILAQLMTGVILTLFLLI 190

Query: 180 DGFSISQQLDSLGEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            G  + +        +      + +   + K +    + ++II  G GL      +L G+
Sbjct: 191 FGPQLFEAFIQHFPKITDKDQARCLVATIQKELSRYIVTVSIINAGLGLSTAFVLYLIGI 250

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +  GV+  ++  IP    +    +     L+  G    A            I  + +
Sbjct: 251 EDALLWGVLAGLLNFIPYVGSLIGATILTLAGLVQFGVQVTALIPPAVYFGLNLIESQFI 310

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            P ++G  ++L  L     L+      G +G+ +   L+  I +   +  + 
Sbjct: 311 TPTVLGRNMQLNPLIVVLWLLVWGWLWGAVGVLLAVPLLVCIKLTLDQLNIW 362


>gi|312912463|dbj|BAJ36437.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
          Length = 344

 Score = 98.5 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L +  L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVPLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 131 --------------NAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 177 SR------PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    +      I  +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|161614094|ref|YP_001588060.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167551544|ref|ZP_02345298.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|161363458|gb|ABX67226.1| hypothetical protein SPAB_01833 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205323625|gb|EDZ11464.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 344

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 105/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 131 --------------NAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV      +  V      G++ 
Sbjct: 177 SR------PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAVLDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++     I +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|52842249|ref|YP_096048.1| transporter, permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
 gi|52629360|gb|AAU28101.1| transporter, permease [Legionella pneumophila subsp. pneumophila
           str. Philadelphia 1]
          Length = 378

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 107/337 (31%), Gaps = 21/337 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++++I    L   +G   P++ ++ +      I S         +   + I  +  +
Sbjct: 35  AGLILVWITGYLLIAGRGLLIPIVISIFVWHLLNTINSGVQKIPFIGTHLPSWIRMILSL 94

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +  ++ L       + ++++      ++ + +   L          +  +       
Sbjct: 95  FVVVCLVMVLINIITNNVSDVIAASPRYQENLLHIFNSLDQRFHVKGIFDFDSLIQGL-- 152

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                            I         +F     S + + + + F + +    +Q++D+ 
Sbjct: 153 ----------------SIQSMLVNIYGVFTTITSSAVLISLYVVFLFVEQHYFTQKMDAF 196

Query: 192 GEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     K I   + K  ++     T++++    +        G+       ++   
Sbjct: 197 FPQAEHRKLVKNIISHITKDTQTYLGIKTLLSLLTATLSWFIMKWVGLDFAEFWALLIFF 256

Query: 251 MAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    I       ++ L+   + +    +        F V   L P L+G  + L 
Sbjct: 257 LNYIPNIGAIVATAFPAALALIQFESWWPFLEVTSGIVAIQFFVGNFLEPRLLGKSLNLS 316

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L   F L       G+LG+F+   +  ++ +I+   
Sbjct: 317 PLVILFALALWGAIWGVLGMFLSVPITVMMMIIFAHF 353


>gi|302552792|ref|ZP_07305134.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
 gi|302470410|gb|EFL33503.1| integral membrane protein [Streptomyces viridochromogenes DSM
           40736]
          Length = 362

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/360 (14%), Positives = 113/360 (31%), Gaps = 27/360 (7%)

Query: 9   QGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           Q +  W  + +++  + +         +    PVL AL+      P++   + K     +
Sbjct: 18  QRLAAWCAVLLLVSGVVYVGIRLCDEFRAAVVPVLLALLGTALLGPLHRRLV-KAGVHRS 76

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V+V+ +    +  +    +    E+V+ +  A++                   
Sbjct: 77  VAAALTCVAVVAVVGGAVYIVVAALIDTGDEIVASLKEASRGIAE--------------- 121

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                           +   L +               +  +     +  ++ +FFF RD
Sbjct: 122 --HFGAAGTSLDDLASNARELLSKFGGTAASGVISGFSVVGESIAVAVLALLLVFFFLRD 179

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               +  L SL         + ++R   K +     G T+IA+ + L +     L  VP 
Sbjct: 180 SDKAAGALRSLAPRGSADTLEAMARRALKAVEGFMRGTTLIALIDALCITVGLLLLDVPG 239

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              LG +  + A IP     IS     +  L       A  +         +    L+P 
Sbjct: 240 APGLGALVFVGAYIPYLGAFISGAVAVLVALADRGFVIALWVLGVVVAVQVLEGHVLQPA 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +    +++        +  G    G+LG+ +   L A    + +E     +  +     +
Sbjct: 300 IQSRTVQMHPAVVMVAITAGASVAGVLGMLLAVPLTAAAFGVAEELRTRYEGQEASPEPS 359


>gi|298374135|ref|ZP_06984093.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
 gi|298268503|gb|EFI10158.1| conserved hypothetical protein [Bacteroides sp. 3_1_19]
          Length = 337

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 130/339 (38%), Gaps = 20/339 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + ++  + +  F   +L A  I             K      F A++     +  F
Sbjct: 18  IILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILCF 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++P+    +  + + + +     +    G  +   + +                  ++  
Sbjct: 78  LIPITSAIWLVINKTQNINLDPTVLLNTGQHIADLVQE------------------KTGF 119

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            + +          +P+           + ++++ +I  L+F    G  +   L +L   
Sbjct: 120 DVLDRGNLLKAASILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFPF 179

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +I
Sbjct: 180 S-DQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATII 238

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T 
Sbjct: 239 PIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLITV 298

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           FG+V G+   G +G+  GP+L++L  +       +  + 
Sbjct: 299 FGVVIGLSLFGFMGIIFGPLLVSLFLLCIDIFKKSYLDK 337


>gi|186683719|ref|YP_001866915.1| hypothetical protein Npun_R3576 [Nostoc punctiforme PCC 73102]
 gi|186466171|gb|ACC81972.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 364

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/328 (12%), Positives = 119/328 (36%), Gaps = 13/328 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  ++  + +   +     ++ A ++ F      +    ++     +   +  +S +
Sbjct: 20  LVFLNGWLAFLLVKNFQPVVTILVLATLLAFVLNYPVAILQ-RQGVKRGYAVSLVFISAL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +   + L    + +  E+V  +           + L++       +   +  L+   
Sbjct: 79  IIIVALGITLVPIVLEQFNEMVKVLPQWIDSSEEKLQILNNWFFNHKLNVNLSHLLTQVT 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         ++F+        +  +D     + +++  F+   DG  I Q +   
Sbjct: 139 DQLPNE--------LEFVTDKLLSIIVDTIDSVSDGLIIVVLTFYLLLDGPRIWQGIFKK 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F     ++S+ + +  ++  +G   +A+  G+     +    V   +  G+   ++
Sbjct: 191 LPGSFAQ---QVSQSIQQNFQNYLIGQVTLALLMGVSETLMFLAFQVQFSLLFGLGVGLL 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++IP G  +S   ++  +    + + A  +F    +   ++D+ + P L+G    L  + 
Sbjct: 248 SLIPFGDVVSVVVITFIIA-THDFWLAVKVFAVAVVIDQLIDQAIAPRLLGRFTGLRPIW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               L+ G    G+LGL I   +   I 
Sbjct: 307 VLIALLVGTNVGGVLGLLIAVPVAGFIK 334


>gi|317131258|ref|YP_004090572.1| protein of unknown function UPF0118 [Ethanoligenens harbinense
           YUAN-3]
 gi|315469237|gb|ADU25841.1| protein of unknown function UPF0118 [Ethanoligenens harbinense
           YUAN-3]
          Length = 366

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/357 (14%), Positives = 118/357 (33%), Gaps = 17/357 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS------KKEESSTFLAV 64
           + R +I  +++  L  L+   +  L   ++ +       +         +++     +  
Sbjct: 13  VRRILIFIVMVALLALLRSMLSIFLLTFMLVYIGNSAEKAVSQLFLKVFRRKADPRVVVA 72

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    V+   ++ L       + ++ +L++ +                       +   +
Sbjct: 73  VLYALVILALVMLLWIYIPVIVRQISDLITNMTDYFTSVSKTKASAGGRFSLESITAFVS 132

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            H+           +    +G   I +F +  G    +  +S+I  +  L          
Sbjct: 133 SHVDV---------SKYLESGGTSIAQFLTNLGTASFNIFMSLILSLFFLLGKPSVVAFG 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q  +S    ++    +   R       +      +I+     +   A  + G PS + L
Sbjct: 184 RQFKNSKLSWMY-EDMRYFVRKFSNSFGAVIQTQLLISCINTTISTVALLIMGFPSVIGL 242

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  ++ ++P     IS   + I   ++G I     + +  A+   +    L P L+  
Sbjct: 243 AAMIFVLGLVPVAGVFISLVPLCIIGYVQGGITKVIWVLVLIAVLHALEGYVLNPKLMSN 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
             +LP   TF  L+     +GL GL IG  L   I  + +      ++   +  S F
Sbjct: 303 KTQLPVFITFLVLLIAEHLIGLWGLVIGLPLAVFILDVLEVLPQGGRQETRRPLSRF 359


>gi|168235560|ref|ZP_02660618.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194735679|ref|YP_002114495.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194711181|gb|ACF90402.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291058|gb|EDY30411.1| inner membrane protein YdgG [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 344

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 104/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVAQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 131 --------------NAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 177 SR------PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++     I +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|163850937|ref|YP_001638980.1| hypothetical protein Mext_1508 [Methylobacterium extorquens PA1]
 gi|163662542|gb|ABY29909.1| protein of unknown function UPF0118 [Methylobacterium extorquens
           PA1]
          Length = 401

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 93/347 (26%), Gaps = 26/347 (7%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + S ++       +             +   IA + +  L +    F       + ++L 
Sbjct: 54  IFSGILFAVFLDGVTRGLGYVLPIGRGWRLAIACLVLAALALGLTAFGGATVASQARDLG 113

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT---------- 143
           + V   ++      +           +          +      ET              
Sbjct: 114 TTVRQQSETVRDWLKERGVEIDLSQGAPAEAGQGGEGKGQDTGKETGKDAGKDKNGKEGG 173

Query: 144 ----------------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +    +   A+   +   +   +++ ++        D  S    
Sbjct: 174 LAGLASGALKSPGSLLSDAGSVLGPAATVVIALFNALGNVLVIVFLGVAIAADPGSYRDG 233

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L          ++     + +R    G  +      ++  +     G+   + LG+ 
Sbjct: 234 ALRLVPPRHREKGARVLDGSGETLRHWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQ 293

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++A +P   P+    V +   +   +                    L PF+    + L
Sbjct: 294 AGLLAFVPTIGPLIAGLVIVLSSLASGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDL 353

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P    F G +      GL G+ +   L+A+I V+ +E  +      E
Sbjct: 354 PAATIFAGQLLLGVLFGLWGVALALPLVAVIKVLLEELYIEDGAEAE 400


>gi|254877432|ref|ZP_05250142.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843453|gb|EET21867.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 339

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 123/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  I  + ++ L  F   +L A ++     P+         +     + +  + ++   
Sbjct: 11  IICIIGALVMWVLYPFIYSILFAGLLAIILAPLQEYLEQHIGKHR--SSFLLVMGILLCV 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +P+L + YY + E+   +      +Q    +   +  IP      +     L    +  
Sbjct: 69  FIPILIVLYYAISEIVSYLQHPETLSQTFATLGDSIGKIPYIGSILQEHLDKLIKAINDD 128

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +      + +  I       G   + +    +  ++ ++ F     ++ +    +   
Sbjct: 129 SDTII----SNLGQILPKVRYVGSTSISFITDFLITLLLVYQFLVSSSTLEKFAKKVVLK 184

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      IS  +    R   L + + A   G V+   + L G+P+ + L    AI +MI
Sbjct: 185 DFDDSDSFISTAII-TTRRVSLAIFLTASLVGTVMAITFLLTGMPTPILLAFTVAIASMI 243

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   ++L F  +  
Sbjct: 244 PFMVGIVYILIGASVFVVYGATKAIIILVVGFALNIFTDNIMQPKIINKQVQLSFAASLI 303

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG++  G +G+F+GPV+  +  V
Sbjct: 304 GILGGIQAFGFIGIFLGPVIFNVTFV 329


>gi|67921802|ref|ZP_00515319.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67856394|gb|EAM51636.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 343

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 91/309 (29%), Gaps = 10/309 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             I    L+ ++     V +A++       +      K +    F  VI  + ++ L I+
Sbjct: 12  FIISCYILWEIRQVLLLVFTAIVFATALNRLVKWL-KKFKIRRNFAIVIIVIGIIFLSIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               +    + + ++L++      +        LS+                    L   
Sbjct: 71  FGWLVVPPFLDQFQKLLALFPNVWERLRTNLILLSETQSRFDWLPPPPSLNDLLTRL--- 127

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  I           L   L +IF+                    L    +
Sbjct: 128 ------QPLLTDIFANFFTVFSNSLLIILQLIFIYFLTITMVMAPKKYRYLFLKLFPSFY 181

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               ++I  +    + +   G+TI  +  G + G    +  V   +   ++  ++  IP 
Sbjct: 182 RKRGEEILTLSEVALGNWLTGVTINCLFIGTLSGLGLLVLQVKLVLVHALLAGLLNFIPN 241

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             P +     + + +    +    + +W  I   I    L P ++   + L    T    
Sbjct: 242 VGPATSVVFPLMVALLDEPWKIWAILIWYFIIQNIESYWLTPTVMAKQVSLLPAVTLMAQ 301

Query: 317 VGGVRTMGL 325
           +   RT G+
Sbjct: 302 IFFARTFGI 310


>gi|297518809|ref|ZP_06937195.1| putative inner membrane protein [Escherichia coli OP50]
          Length = 318

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 115/319 (36%), Gaps = 6/319 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    +  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGR----FMVHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++Q +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W  +   + D  +RP L
Sbjct: 241 ATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPML 299

Query: 301 VGGPIKLPFLPTFFGLVGG 319
           +     LP +    G++GG
Sbjct: 300 IRMGADLPLILILSGVIGG 318


>gi|167623922|ref|YP_001674216.1| hypothetical protein Shal_1993 [Shewanella halifaxensis HAW-EB4]
 gi|167353944|gb|ABZ76557.1| protein of unknown function UPF0118 [Shewanella halifaxensis
           HAW-EB4]
          Length = 360

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 134/341 (39%), Gaps = 4/341 (1%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            V    +  +   ++   I+     PI++    +   S    +V +   V  + ++PLLF
Sbjct: 22  YVCYLLISPYLGSIVLGFIVSILFLPIHTRIQHRMPNSPNMASVFSCTLVTVMVLIPLLF 81

Query: 81  LFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +    M E    ++        G          I  G+     W    S      +    
Sbjct: 82  VAMAIMNEGINFMTNAYEWLTGGGAKSFLAHPYIQSGVALLNKWLPFDSIKIDELVQQAA 141

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              T         ++       D  L    M+  LFFF RD   I      +   L  + 
Sbjct: 142 GKVTQLSTSFLSASTGIAGDVADTFLDFGLMLFVLFFFLRDQEKIIDNTRHIIP-LSRSQ 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA- 258
              I   V  V +S  LG  + A+ +G++ G A  LAG  S +  G + A  + IP    
Sbjct: 201 QGLIFNEVGVVAKSAVLGAFLTALAQGVLGGIAMSLAGF-SGLFWGSMMAFASFIPFVGT 259

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            + +   SIYL I G+   A  + +WG + +  +D  LRP+L+ G   +  L  FF L+G
Sbjct: 260 AMIWLPASIYLFITGDWQWAIFMMVWGVVVVGSIDNFLRPWLMQGNTGMSTLLLFFSLLG 319

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G++  GL+GL  GP++ A+  V+ +   +  K+  E+    
Sbjct: 320 GLQLFGLIGLIYGPIIFAVTLVLARLYEIEFKDFIEQQDKE 360


>gi|240948564|ref|ZP_04752937.1| membrane protein [Actinobacillus minor NM305]
 gi|240297072|gb|EER47643.1| membrane protein [Actinobacillus minor NM305]
          Length = 354

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 108/342 (31%), Gaps = 15/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +T    +  +    + IIL  +          L +L I     P+     ++K       
Sbjct: 2   QTSSLTRFFLATAAVVIILAGVKLAGEIVIQFLLSLFIAIICSPVIRFMTNRKIP----- 56

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A   +  LFI+   FL       ++E  + + L  +        L            
Sbjct: 57  LGLAVAFLFVLFIIAFFFLASMINNTIREFTTSIPLYKETLAVKLNTLEGFIQKWNIPIS 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             +          + + F  +  +  + R    F  +  +  + ++ ++  LF       
Sbjct: 117 LPE--------MSILDNFDPSVVMRLVSRLLLSFSDVVSNIFMLLLVVVFMLFESPTIKH 168

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            ++                 I+R+V  +IR      T+++   G  +       GV   V
Sbjct: 169 KLAIAFSHNNLKSIKQEEDHINRVVESIIR-YLGVKTVVSALTGFCIWLLLESFGVQYAV 227

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
              V+  ++  IP    I      +   LI  +   A  + +       IV   L P ++
Sbjct: 228 LWAVLAFLLNYIPNIGSILAGIPIVLQALILNDFPIAAGVTIGVVAINMIVGNILEPKMM 287

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G  + L  L     L+     +G +G+ +   L   + +  +
Sbjct: 288 GKTLGLSTLVVTLSLLFWGWLLGTVGMLLSVPLTMALKIALE 329


>gi|320106143|ref|YP_004181733.1| hypothetical protein AciPR4_0906 [Terriglobus saanensis SP1PR4]
 gi|319924664|gb|ADV81739.1| protein of unknown function UPF0118 [Terriglobus saanensis SP1PR4]
          Length = 330

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 113/344 (32%), Gaps = 21/344 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMC 72
           M I+L + + L      V  + +      P+ +   + K      S     VI  V++  
Sbjct: 1   MLILLYAGWHLLRVLEIVYVSALFAVVLSPVVAKITTWKIRSWHPSRPIAVVILLVALFG 60

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
              +         M ++KE  + +       +                    K++     
Sbjct: 61  ALFLFFRLGLPPVMRDLKEFATDLPARIPVLLARI-----------------KNMPLADK 103

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L I + T            +      ++ ++   I+  II   +F  +G  + +   S  
Sbjct: 104 LGIENITTRVETAASATAAYIVSSLPLWAEHLFDIVTTIILTVYFILEGDEVYKYFLSTL 163

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +  F      + R+  + +    +G  I+   +G      +    +   V LG++  I  
Sbjct: 164 KTGFRRRMDGMFRVAEERVSRWLIGQLILMGIQGAYSLIVFGALHIRYFVLLGILMGITN 223

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP    +    +   +    +  +A  + ++ A      +  L P ++   + L  +  
Sbjct: 224 IIPIAGNLVTIVIVFGVAAADSWPHAFLVLIFYAAYTQFENAWLTPRIMKQSVDLMGIAV 283

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
              L+ G    G++G  +     AL+AV   E ++  +E     
Sbjct: 284 LIALLVGSTLAGIVGALVAVPSAALVAVFADEFLVQKEEALPAP 327


>gi|110638692|ref|YP_678901.1| hypothetical protein CHU_2298 [Cytophaga hutchinsonii ATCC 33406]
 gi|110281373|gb|ABG59559.1| conserved hypothetical protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 371

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 114/350 (32%), Gaps = 17/350 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +   + +   +I  I++ ++ F   +  PV  A +     +P+      K   + T  
Sbjct: 2   EHVQISRLLQNLLITVILVTTMIFASTWLIPVSWAFLFACLLYPVCMFIERK-GLNRTLT 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           +++ T+    +    + FL    +L ++   + +    +    V   +    G  +    
Sbjct: 61  SMLVTLLFCVIMFFIMYFLIMQALLIIQTNDNVLHKIKEGIESVILHIQSKTGLEF---- 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                 +       S + +  NG+  I    S  G   L   L+ +F+   L        
Sbjct: 117 ------YHPHSLKESLSTIFQNGMSVISTQLSSVGTNVLTIALTPVFLFFILNLRGLVKA 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              +              +         +++   G  I+     ++      L GV S +
Sbjct: 171 FYIKNYK----GNDLESIQTFITKSLTSMKNYLWGTMILTAVTAVMTYIILMLFGVKSAI 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              V  AI+ +IP    +           + K ++     + +       I +  LRP L
Sbjct: 227 FFSVFLAILNIIPYLGNLIAYIAILSFVWVTKESVSILIYITICLYFSNMIQENILRPKL 286

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           VG  +++        ++ G    G+ G+ +    + +   + + +    K
Sbjct: 287 VGDKMEINAFLVLSAVMLGAIIWGVSGMVLFVPFLGIAKALVESNPEWNK 336


>gi|323359731|ref|YP_004226127.1| permease [Microbacterium testaceum StLB037]
 gi|323276102|dbj|BAJ76247.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 357

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 118/341 (34%), Gaps = 5/341 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +++ S+  L      V +AL +     P+ S    +         +   + V+ +F 
Sbjct: 19  VGLLLIGSVENLSTILLYVGTALFLSLGLDPVVSFLERR-GLPRWAAVLATILGVLGIFA 77

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  +    + ++ +LV+++    + G      +        A+  W +       ++ 
Sbjct: 78  GIIFMVVPIIVSQITQLVAQIEQLFRPGR-WNEIVLGAQDWASANFPWLRLDEVWAGIQH 136

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T    +    I      FG            ++I   +F     S+   +  L    
Sbjct: 137 WFSTLDVGSISTMIGNSLLTFGGAIAAGLGGAFIVLILTIYFTASTPSLKSAVYQLVPAS 196

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
             A + +++  +   +    +G   + +  G++      +   P    L V+    ++IP
Sbjct: 197 KRARFIELAEKITDSVGYYVMGQVSLGVINGILSAIFLSIINAPFPAVLAVVAFFFSLIP 256

Query: 256 GGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
               ++      ++  +   G+   A    ++  I + I    + P ++   + +P    
Sbjct: 257 LVGTLTGSTIIVLTCLIPGLGSPTIAIIALIYYLIYMQIEAYVISPRIMNRAVSVPGAVV 316

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               + G   + LLG  I   + A I +I++E I+  +  +
Sbjct: 317 VISALAGGALLNLLGALIAIPVAASILIIYREVIIPRQNER 357


>gi|254852442|ref|ZP_05241790.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|258605752|gb|EEW18360.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
          Length = 384

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 110/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVHVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|78049634|ref|YP_365809.1| putative permease family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78038064|emb|CAJ25809.1| putative permease family protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 368

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/336 (11%), Positives = 105/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    P++ A        PI      K        A++     +
Sbjct: 31  LVVLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGL-RKLYIPRFLGALLILCLGL 89

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +     L       +++   ++    +    + + +                     
Sbjct: 90  AGTVTLATQLAGPADEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGGEGQRG 149

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + ++       +   P+ A+    + L             FFF   G S+ +   +L
Sbjct: 150 VQIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIAL 198

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV      +  +P    +  G + 
Sbjct: 199 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILSVLQIPLPEAILWGTVV 258

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 259 ALLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 319 ISPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 354


>gi|255531139|ref|YP_003091511.1| hypothetical protein Phep_1233 [Pedobacter heparinus DSM 2366]
 gi|255344123|gb|ACU03449.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 370

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 117/336 (34%), Gaps = 14/336 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  M    +          +   AP+L++ ++     P+ +    K     +  A+I+ 
Sbjct: 10  TKLAMVLFSIISAGYLAILGQTILAPLLTSFLLALLLLPMANFMEQKWRFKRSIAAIISV 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ +    L FL        K+       A      V  W+S   G     ++     
Sbjct: 70  VLMIGVISSILYFLANQLTDLWKDWPLLKHQAETSFHDVQHWISRTFGVNAQKQIDYLKN 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   ++   +     T            F ++F  + L+   +             +   
Sbjct: 130 SASSAVATSATVLGATLLTVSSTLLFLSFLLLFTFFILNYRGI-------------LFNF 176

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S+ E        +I R +  +I+    G+ +      +++    W+  V   V LG+I
Sbjct: 177 LSSVFEEKHKQKVSEIVRQIQYIIKKYITGLFLQMFIVTVLMIFTLWVLNVKYAVLLGLI 236

Query: 248 TAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           + I  ++P     +   +S+ +            + +       +    L P +VG  +K
Sbjct: 237 SGIFNIVPYLGIFTALLISVLITFATAGAAKVLLVLIAFVSIHALDGNVLMPLVVGSKVK 296

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L  F G+V G    G+ G+F+    +A++ +I+
Sbjct: 297 INALFAFIGIVVGEMIWGISGMFLCIPYLAMLKIIF 332


>gi|182680787|ref|YP_001828947.1| hypothetical protein XfasM23_0216 [Xylella fastidiosa M23]
 gi|182630897|gb|ACB91673.1| protein of unknown function UPF0118 [Xylella fastidiosa M23]
 gi|307579253|gb|ADN63222.1| hypothetical protein XFLM_06455 [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 369

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 107/335 (31%), Gaps = 17/335 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI  +    +   +    ++  + + 
Sbjct: 32  LVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALLLLCLGIS 91

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++ +                      Q      R ++     +              
Sbjct: 92  GTVVLSVELAGP------------ASEWIQQAPDKIRQVARQVRHLTRPMQQANQAVESL 139

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +     ET  ++  +           M      +S++ +I+  FFF   G  + ++  +L
Sbjct: 140 ARAADGETERQSQIVRTRLYNPYTVLMDTHKLVISVLGVILLTFFFMVFGEKLQRKAIAL 199

Query: 192 GEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
             +     +   I R +   I    L +++I    GL+      L  +     +  G + 
Sbjct: 200 LPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEALLWGTVV 259

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + +   L+       A    L   +   +  + + P ++G  + 
Sbjct: 260 ALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPIILGHRMA 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  L     L+      GL+GL +   ++  I ++
Sbjct: 320 ISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMV 354


>gi|188580764|ref|YP_001924209.1| hypothetical protein Mpop_1508 [Methylobacterium populi BJ001]
 gi|179344262|gb|ACB79674.1| protein of unknown function UPF0118 [Methylobacterium populi BJ001]
          Length = 395

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/350 (10%), Positives = 91/350 (26%), Gaps = 29/350 (8%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + S ++       +             +   +A + +  L    + F       + ++L 
Sbjct: 45  IFSGILFAVFLDGLTRGLGHVLPIGRGWRLALACLVLAALAFGLVAFGGATVASQARDLG 104

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT---------- 143
           + V   ++      +           +                                 
Sbjct: 105 TTVRQQSETVRDWLKERGIEIDLSQGAPAGQAATQEASQAGGQGAGQGAGGEGEDGKNQK 164

Query: 144 -------------------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                              +    +   A+   +   +   +I+ ++        D  S 
Sbjct: 165 QGGLTGLASGALKSPGSLLSDAGSVLGPAATVVIALFNALGNILVIVFLGIAIAADPGSY 224

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 L          ++     + +R    G  +      ++  +   L G+   + L
Sbjct: 225 RDGALRLVPPRHREKGARVLDGAGETLRHWLFGQLVTMAAIFVLTWAGLSLLGIGGALIL 284

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+   ++A +P   P+    V +   +   +                    L PF+    
Sbjct: 285 GLQAGLLAFVPTIGPLIAGVVIVLSSLASGLNGLLGALGVYLAVQTAESYGLTPFIQRRA 344

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + LP    F G +      GL G+ +   L+A+I V+ +E  +      E
Sbjct: 345 LDLPAATIFAGQLLLGVLFGLWGVALALPLLAVIKVLLEELYIEDGAEAE 394


>gi|148255935|ref|YP_001240520.1| putative transport protein/permease [Bradyrhizobium sp. BTAi1]
 gi|146408108|gb|ABQ36614.1| putative transport protein/permease [Bradyrhizobium sp. BTAi1]
          Length = 382

 Score = 98.1 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/358 (10%), Positives = 88/358 (24%), Gaps = 12/358 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++    L   ++       + S +++G     + S               +  +++ 
Sbjct: 24  IGVILFAATLAFSWYYAAALFLLFSGMLLGVALNAMTSLLGRVLPWPHPLRLALVCLTLA 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +  +         + K L   +     +                 S       +   
Sbjct: 84  ALLVGIVFLGGTTIADQAKVLSDTIKSQLGNIKGFLDRNGIDTSFFDFSAATQATPAPDG 143

Query: 132 SLKILSE------------TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                ++                 +    I     +  +  +    +   ++     F  
Sbjct: 144 GSTTPTQAPSHSLPGGLPSPSALASSGGAIVSQTFKLLLGTVSAVGNFFIVLFLGLAFAA 203

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                   L  L    +      I   +   +    +          LV      + GV 
Sbjct: 204 QPAVYRSGLLFLAPAKYRDQATVIIDRISYTLERWLIAQITTMFAVFLVTWIGLAVIGVQ 263

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           S   LG+   ++A IP    I    + +   +      A   F+       +    L P 
Sbjct: 264 SSFILGIQAGLLAFIPTVGAIIAGVIVVLASLASGWVAAVSAFVLFLGVHAMESYVLTPL 323

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           +    + +P    F   +      G+ GL +   LMA+  V+               +
Sbjct: 324 IQRQALDIPPATLFAFQILLGIVFGVWGLTLALPLMAIAKVMIDYFKSDRSTEDAAAA 381


>gi|218462579|ref|ZP_03502670.1| hypothetical protein RetlK5_25350 [Rhizobium etli Kim 5]
          Length = 287

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 70/214 (32%), Gaps = 3/214 (1%)

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                 W +  +                 +  +       G   +D    ++   +  F+
Sbjct: 28  NSLLPEWVRSQAGTIKDNFSGILSEGMGFLTGLFAQIWNSGKAIVDVISLLVVTPVVAFY 87

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              D   +  ++D      + A  ++I++ + + I     G   + +  G+   +   L 
Sbjct: 88  ILLDWDRMVSKVDQWIPRDYVADVRQIAKEIDQAIAGFIRGQGSLCLILGIYYAAGLSLV 147

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSI---YLLIKGNIFNATCLFLWGAIELFIVD 293
           G+   + +G+   +++ IP    +    +S+    +    +      + +      F+  
Sbjct: 148 GLNFGLLIGLFAGMISFIPYVGSLVGLVLSVGVAIVQFWPDYPWIGLVIVVFFSGQFLEG 207

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L+P LVG  + L  +   F L       G +G
Sbjct: 208 NILQPKLVGSSVGLHPVWLMFALFAFGALFGFVG 241


>gi|15802015|ref|NP_288036.1| putative transport protein [Escherichia coli O157:H7 EDL933]
 gi|15831561|ref|NP_310334.1| transport protein [Escherichia coli O157:H7 str. Sakai]
 gi|168750589|ref|ZP_02775611.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757486|ref|ZP_02782493.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763699|ref|ZP_02788706.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771140|ref|ZP_02796147.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775828|ref|ZP_02800835.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783421|ref|ZP_02808428.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|168800858|ref|ZP_02825865.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|195938991|ref|ZP_03084373.1| putative transport protein [Escherichia coli O157:H7 str. EC4024]
 gi|208810317|ref|ZP_03252193.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816938|ref|ZP_03258058.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819961|ref|ZP_03260281.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396236|ref|YP_002270673.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|217328601|ref|ZP_03444682.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|254793218|ref|YP_003078055.1| putative transport protein [Escherichia coli O157:H7 str. TW14359]
 gi|12515579|gb|AAG56588.1|AE005383_10 putative transport protein [Escherichia coli O157:H7 str. EDL933]
 gi|13361774|dbj|BAB35730.1| putative transport protein [Escherichia coli O157:H7 str. Sakai]
 gi|187768663|gb|EDU32507.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015272|gb|EDU53394.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999244|gb|EDU68230.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355555|gb|EDU73974.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359988|gb|EDU78407.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366167|gb|EDU84583.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4501]
 gi|189376932|gb|EDU95348.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC508]
 gi|208724833|gb|EDZ74540.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731281|gb|EDZ79970.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740084|gb|EDZ87766.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157636|gb|ACI35069.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC4115]
 gi|209769940|gb|ACI83282.1| putative transport protein [Escherichia coli]
 gi|209769942|gb|ACI83283.1| putative transport protein [Escherichia coli]
 gi|209769946|gb|ACI83285.1| putative transport protein [Escherichia coli]
 gi|217317948|gb|EEC26375.1| permease, PerM family [Escherichia coli O157:H7 str. TW14588]
 gi|254592618|gb|ACT71979.1| transporter of quorum signal AI-2 [Escherichia coli O157:H7 str.
           TW14359]
 gi|320188286|gb|EFW62948.1| Putative transport protein [Escherichia coli O157:H7 str. EC1212]
 gi|326341967|gb|EGD65748.1| Putative transport protein [Escherichia coli O157:H7 str. 1044]
 gi|326343517|gb|EGD67279.1| Putative transport protein [Escherichia coli O157:H7 str. 1125]
          Length = 344

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSTLNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+           +        +I + +
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFKQMMARPVEGMAAIQRAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV  +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|199597441|ref|ZP_03210871.1| Predicted permease [Lactobacillus rhamnosus HN001]
 gi|199591701|gb|EDY99777.1| Predicted permease [Lactobacillus rhamnosus HN001]
          Length = 358

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 103/341 (30%), Gaps = 17/341 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  +N   + R +++F + + L+F +   + +L   I       +  +           +
Sbjct: 5   EKFINNVPVRRTVVLFSVFLVLWFARSIMSDILLTFIFALLVSRLVHAVQRHVHVRPFVI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V   + V+   I   +      + +   L + V             +            
Sbjct: 65  VVPVYILVILGLIYAAVHYVPAIIHQTITLFNSVQDFYNSDAFANNQVMQWVL------- 117

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   QS K L+ T     G+  +  +A   G + L   LS I              
Sbjct: 118 --------QSTKSLNLTEQLKTGLSTVLEYAGNIGAMGLTLVLSFILSFFFTIELDSLPA 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                LDS     F    +  +                IA+   ++         +P+  
Sbjct: 170 FGQLFLDSPFGWYFKDL-RYFALKFINTFGVVMEAQIFIAVVNTVITTITLLFMKMPNIP 228

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++++IP    I     ++I     G   +   + +  A    +    L P  +
Sbjct: 229 SLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDVITILIMIAAIHVLEAYVLNPKFM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+   R  G  GL +G  +      + 
Sbjct: 289 SSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFFLDVL 329


>gi|290958928|ref|YP_003490110.1| integral membrane protein [Streptomyces scabiei 87.22]
 gi|260648454|emb|CBG71565.1| putative integral membrane protein [Streptomyces scabiei 87.22]
          Length = 347

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 104/345 (30%), Gaps = 27/345 (7%)

Query: 9   QGIMRWMIMFIILVSLYF--------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  W  + +++  + +         +    PVL AL+      P++   +       +
Sbjct: 9   RRVAAWCAVLLLVAGVGYVGVRLCVEFRTALTPVLLALLGTALLGPLHRRLVG-AGVHRS 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V+V+ +    +  +    +    ++V+ +  A                     
Sbjct: 68  VAAGLTCVAVLGIVGGAVYVVAVALVETGDQIVASLRNAADDLAS--------------- 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                               L                 +  +     +  +  +FFF RD
Sbjct: 113 --HFGAAGTSLDDLAAHAKELLARFGGTAASNVISGVSVVGEAVAMAVLALFLVFFFLRD 170

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                  L ++         + I+R   + +     G T+IA+ + + +     +  VP 
Sbjct: 171 SHRAVAALRAMSPRGGADLVEAIARRAFEGVEGFMRGTTLIALIDAVCITVGLLILDVPG 230

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG +  + A +P     +S     +  L    +  A  +         +    L P 
Sbjct: 231 AIGLGALVFVGAYLPYLGAFVSGAVAVLVALADRGVVIALWVLGIVFAVQMLEGHVLMPM 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +    +++        +  G    G+LG+ +   L A +  +  E
Sbjct: 291 IQSRTVQMHPAVVMLAITAGASVAGVLGMLLAVPLTAAVLGVVHE 335


>gi|254432531|ref|ZP_05046234.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
 gi|197626984|gb|EDY39543.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
          Length = 341

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/321 (12%), Positives = 105/321 (32%), Gaps = 28/321 (8%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           ++  + + +      ++A ++           + +   + +   ++  +  + +  + + 
Sbjct: 30  VVKLIDYFQAVLTLFIAAAMLAVLLDFPVRRLV-RLGCARSLAILLTVLGTLGVVGLFVQ 88

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    + +   L++ +VLA Q                   EL                 
Sbjct: 89  VLGSQLINQGSTLLNDLVLAFQRPDLPFHSFLKTIEPPQLIELLRAS------------- 135

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                        +              +F+++ + +   D  +  +QL  L        
Sbjct: 136 ----------LGTSLGVVGGAFTSVFGSVFLVVIVVYMLIDNGATWRQLLRLLPIDVRDR 185

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           + +    V K +     G   + I   L     + + GV   + L ++  ++  IPG   
Sbjct: 186 FDR---SVQKNVLGFLRGQVTLMIFLCLASLLVFAVLGVKFSLLLAIVVGVLDAIPGIGA 242

Query: 260 -ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            +     +  + +    + A  + +   +   I D  + P ++G  +++  +  FF L  
Sbjct: 243 TLGVIVAATVVFLTQGQWLALQVVIASVVLQQIQDNLIHPRVMGRVLEIQPVVLFFALFV 302

Query: 319 GVRTMGLLGLFIGPVLMALIA 339
           G R  GLLG+F+   +  ++ 
Sbjct: 303 GERLAGLLGVFLAIPVAGMLL 323


>gi|47570617|ref|ZP_00241232.1| membrane protein [Bacillus cereus G9241]
 gi|47552723|gb|EAL11159.1| membrane protein [Bacillus cereus G9241]
          Length = 181

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 66/177 (37%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
            ++DG +   +  SL    +     +I +   + + +   G  ++ I  G      Y + 
Sbjct: 1   MFKDGHAFPGKAVSLLPESYREEGLRIIKETNETLSAYIQGQALVCIFVGAFTFIGYLII 60

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            +P    LG+I A   +IP   P    A ++ + +  +   A  + +   I        +
Sbjct: 61  DLPYAFVLGIIAAFTNIIPNLGPFIGAAPAVIVGLFVSPMQALYVIIIVTIVQQFESNII 120

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            P ++   + +  L     ++G     G++G+ +   + A+   +    +   K  +
Sbjct: 121 SPRIMSSKLNIHPLTIIILILGVGNFAGIIGMILAVPVYAVTKTVVSNLVRLFKTKR 177


>gi|325921822|ref|ZP_08183639.1| putative permease [Xanthomonas gardneri ATCC 19865]
 gi|325547699|gb|EGD18736.1| putative permease [Xanthomonas gardneri ATCC 19865]
          Length = 337

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/335 (11%), Positives = 103/335 (30%), Gaps = 17/335 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +    +  +L+  +    PV+ A        PI      K        A +     + 
Sbjct: 1   MVLATLAVGYTLWAAQTIILPVMLAAFFALIGNPILRGL-RKLYIPRFLGAFMVLCLGLA 59

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +     L       +++   ++    +    + + +                      
Sbjct: 60  GTVALAAQLAGPAAEWVQQAPRQMRQIARDVRDLTKPVMQANQAAENFARAAGGEGQRNV 119

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             + ++       +   P+ A+    + L             FFF   G S+ +   +L 
Sbjct: 120 QIVRTQMDDPYKALVRTPKLAASVLAVVL-----------LTFFFMVYGESLQRHAIALL 168

Query: 193 EHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVITA 249
            +     +  +I   + + +    L +++I    GLV     +   +P    +  G + A
Sbjct: 169 PNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYALKIPLPEALLWGTVVA 228

Query: 250 IMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           ++   P   P+    + + +  +      +A    +       I  + + P ++G  + +
Sbjct: 229 LLNFAPYVGPLIGVMLMLLMGFVEFRTTLSAMLPAILYLALHTIEGQVVTPIVLGRRMAI 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L     L+      G++GL +   L+  I ++ 
Sbjct: 289 SPLMLILALMLFGWLWGMVGLLLAVPLLVCIKMVL 323


>gi|225386463|ref|ZP_03756227.1| hypothetical protein CLOSTASPAR_00210 [Clostridium asparagiforme
           DSM 15981]
 gi|225047432|gb|EEG57678.1| hypothetical protein CLOSTASPAR_00210 [Clostridium asparagiforme
           DSM 15981]
          Length = 352

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 29/330 (8%), Positives = 88/330 (26%), Gaps = 13/330 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----STFL 62
            + I+      ++     +L    AP     ++     P       +             
Sbjct: 9   KKLIVITGTTGVVYAGFRYLLPLVAPFFIGYLVALMLRPSARFLSYRLRLRIRGKTRHLP 68

Query: 63  AVIA----TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
             +      + ++ L    L +       E K L  ++ +  +                +
Sbjct: 69  VGVVGGAEFLLLITLLGAGLYWGLVKLCQEGKMLALQLPIWVEQFDLWLTGSCREMEQTF 128

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                       + L  L +   ++     +    +          + ++  +  +    
Sbjct: 129 GLREGRVADVVSEMLTNLIQAGKQSAMPALMANSVTVIRWGVGITVVFVVLFLAVVLSLQ 188

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  ++  S+        +  I + +    ++ F    II     ++        G 
Sbjct: 189 EMDDLRVRRDLSVF----RREFAMIGKRIVHTGKAWFKTQGIILSLITMLCILGMAAIGN 244

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P ++  G+   ++  +P     +       + +    +          +  +++ + L  
Sbjct: 245 PYYIMAGIGIGVLDALPIFGTGTVLIPWSLICLFMGRWGRALALFALYLICYLIREYLET 304

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+   + L  L T   +  G++  G  G 
Sbjct: 305 KLMSNQVGLSPLETLAAVYVGLQLFGFPGF 334


>gi|124024399|ref|YP_001018706.1| hypothetical protein P9303_27111 [Prochlorococcus marinus str. MIT
           9303]
 gi|123964685|gb|ABM79441.1| Domain of unknown function DUF20 [Prochlorococcus marinus str. MIT
           9303]
          Length = 356

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/327 (12%), Positives = 104/327 (31%), Gaps = 19/327 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAP-------VLSALIIGFTSWPIYSSFIS 53
           M   ++ P  +   +++ +  ++L+ L+    P        ++A +I F           
Sbjct: 1   MLGPLVFPIWLRLSLVLPLFALNLWVLRQLLLPLAPFPGLFVTAALIAFLLDIPSRWINQ 60

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          +  V  + L ++  + L    + ++ +L++++             L + 
Sbjct: 61  RLGLPRWLAIGVVAVLTVGLLVLAGVALVPRLIDQLGQLINELPGWLVAAEGWVSRLQEW 120

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
             G      +    S   +          +     + +         L   ++ + +++ 
Sbjct: 121 ASGRGLPSEFGDFSSDLLTRL--------SGVATQLSQQLLGILGATLGITINTLLVLVL 172

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             F    G  I+  L       +      +   +    R  F G  ++A+       + +
Sbjct: 173 AVFLLLGGDPITAGLARWLPDQWREL---VVDTITGTFRGYFAGQVLLALILSGGQIAVF 229

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L  +P  V   V+     +IP  + ++   VS  L    +      +         IVD
Sbjct: 230 TLLDIPFGVLFAVLIGFTTLIPYASALTIVGVSALLA-LQDPRMGLEILAAAIAVGQIVD 288

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           + ++P L+G  + L        L  G 
Sbjct: 289 QVIQPRLMGSIVGLQPAWLLIALPIGA 315


>gi|213582219|ref|ZP_03364045.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 328

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/329 (13%), Positives = 99/329 (30%), Gaps = 22/329 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + +IL  + F      P + AL I     P+      +          +  V ++ L ++
Sbjct: 4   LVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIVIIVMLMVL 62

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L +L        + L             +  WL     G+   EL              
Sbjct: 63  LLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP-------- 114

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  +    ++         L ++ ++  L    +    + Q +        
Sbjct: 115 ------NAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMMSR------ 162

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P       +     +    +  T I+I  GLV         V      G++   +  IP 
Sbjct: 163 PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLAFALNYIPN 222

Query: 257 GAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              +      I  +L+    ++A  +     +   +    L P ++G  + L  L  F  
Sbjct: 223 IGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLS 282

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+     +G +G+ +   L  ++ +  ++
Sbjct: 283 LIFWGWLLGPVGMLLSVPLTIIVKIALEQ 311


>gi|255693657|ref|ZP_05417332.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
 gi|260620544|gb|EEX43415.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
          Length = 334

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/345 (18%), Positives = 137/345 (39%), Gaps = 20/345 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L A  I             KK+   +  A++ T 
Sbjct: 9   KYSLIVIILFMGVIIFRQITPFLGGLLGAFTIYILVRTQMHHLTEKKKIKRSISALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F+VPL    +  + +++++        +    V  ++ +  G             
Sbjct: 69  ETIFVFLVPLGLTIWMIVNKLQDINLAPQTFVEPIQQVAGFIKEKTGYDVL--------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                         +  +  +PR             +++  MI  L+F    G  +   +
Sbjct: 120 ---------GKDTLSFIVSILPRIGQLIMSSISSLAVNLFVMIFVLYFMLIGGKKMEAYI 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           + +         +++   +  ++RS  +G+ ++AI +G +    Y + G P+ + LG +T
Sbjct: 171 NDILP-FNETNTREVIHEINMIVRSNAIGIPLLAIIQGGIAMIGYLIFGAPNVLLLGFLT 229

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               +IP     + +  V+ YL I G+ F+A  LF +GAI +   D  +R  L       
Sbjct: 230 CFATIIPMVGTALVWFPVASYLAISGDWFHAIGLFAYGAIVVSQSDNLIRFILQKKMADT 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
             L T FG+V G+   G +G+  GP+L++L  +          ++
Sbjct: 290 HPLITIFGVVIGLPLFGFMGIIFGPLLLSLFFLFVNMFKKEYLDS 334


>gi|282901613|ref|ZP_06309531.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281193489|gb|EFA68468.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 360

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 105/335 (31%), Gaps = 12/335 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +++  + + +   + V+ A+++ F        F +          V   +  + +     
Sbjct: 26  LLIQVIKYFQPLVSVVVLAILLSFVLNYPIKFFHN-LGIPRILAIVGVLLLTVVMLGAIG 84

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + L      ++ EL++ +      G    +   D            + L           
Sbjct: 85  VILLPLIFQQLNELINILPAWISSGTQQLQAFLDW-------AATQQDLPVNIIGIATQL 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               +N I         F    + + L++I  I+   +   +G  +   L          
Sbjct: 138 LEKISNQIQSFTGKILTFAFDTIGFLLNLILTIVLTIYLILNGEKLWDGLYGWLPTYLGV 197

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             + + +      ++ F+G   +    G+ +   +    +P  +  G+     ++ P G 
Sbjct: 198 KARALLKE---DFQNYFIGQATLGAVLGVTVTLTFIALKIPLALLFGITIGFFSLFPFGT 254

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I    VS+ +    N + A  + L       I    + P L+G    L  +     L+ 
Sbjct: 255 GIGIGIVSLLIA-LENFWQAVEVALIAVTIDQINSNIVAPRLLGSLTGLNPVWVVISLLV 313

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G +  G+LGL I   + + I            +  
Sbjct: 314 GAKLGGVLGLLIAIPIASFIKDFADIWREGQLQTD 348


>gi|88813395|ref|ZP_01128632.1| hypothetical protein NB231_07055 [Nitrococcus mobilis Nb-231]
 gi|88789361|gb|EAR20491.1| hypothetical protein NB231_07055 [Nitrococcus mobilis Nb-231]
          Length = 369

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 105/341 (30%), Gaps = 14/341 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +      +  + + +++ +LY     F P+  A +I     P+       K       A
Sbjct: 24  PINIRSVALTGIFVLMVMYTLYLAAPLFMPLTVAFLISMMFAPLIRGLKKIKIPPPISAA 83

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++    +   F                + + K   A +           + G M   +  
Sbjct: 84  LVLASLLALGFGAVYGLSVP-----ASQWIQKAPQALREID------HKLYGLMGPMDKL 132

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +     +     +      +                      +   +I L+F    G S
Sbjct: 133 KRAKQEIEEAVPGNNDDKVDSMTSIRWNPIQWLLTGTWAVVYGLGVSVILLYFLLASGDS 192

Query: 184 ISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             ++L  +           +  + + + I      +T+I I  G V  +A +  G+P+ +
Sbjct: 193 FLRKLVRILPRFEDKRNAVETIQHIQRSIAIFLGTITLINICLGAVAAAALYALGMPNPL 252

Query: 243 ALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             GV+  ++   P   P+      + + LL   ++               +  + + P L
Sbjct: 253 LFGVMVGLLNFAPYIGPLISSMILLVVALLSLDDVSQMLLAPALVLALNALEGQLITPIL 312

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            G  + L  +  F  +       G++G+ I   L A + ++
Sbjct: 313 AGHRLNLSPVVIFLSITLWGWMWGIIGILIAVPLAASVKIV 353


>gi|331668275|ref|ZP_08369123.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA271]
 gi|331063469|gb|EGI35380.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA271]
          Length = 344

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|260905376|ref|ZP_05913698.1| AI-E2 family membrane protein [Brevibacterium linens BL2]
          Length = 356

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 118/338 (34%), Gaps = 8/338 (2%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           + F ++ +L  +      +  AL +     PI    + ++    +   V+  ++ + +  
Sbjct: 27  LAFGLITALQSVATVIIYIGLALFLALGLEPIVLWLVERR-LPRSLSVVLVVLAFLAIVA 85

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +L +    + ++++ +  +             L+         + +T  +   +    
Sbjct: 86  GAVLLIAPAVISQIQQFIGDLPDIVAS-------LAATGWVADLEQRFTGAVDLDKIFAN 138

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L E       +  +       G   + +   ++ ++I   +F     +I   + SL    
Sbjct: 139 LGEWASDPKNVVSLGGGVVSIGAGIISFLAGVVIVVILTIYFAVTMPTIKSAMLSLVAAS 198

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                + ++  V + I    LG   + I  G+       + G P    L  I  + ++IP
Sbjct: 199 SRPTVESVTEEVTRSIGRYVLGQVSLGIVNGVCSAIFLTIIGAPLPALLAFIAFLASLIP 258

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              PI+   +     +  +      + ++  + + +    L P ++   + +P       
Sbjct: 259 LVGPITGAIIITGSCLMVSPGLGIAVGIYYLVYMQVEAYLLSPRIMKTAVNVPGALVIIA 318

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            + G    G+LG  +   + A   +I ++ I+  ++ +
Sbjct: 319 AIAGGTLGGVLGAVVAVPVAASGMIIIRKVIVPAQDKR 356


>gi|71897747|ref|ZP_00679973.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
 gi|71732302|gb|EAO34356.1| Protein of unknown function UPF0118 [Xylella fastidiosa Ann-1]
          Length = 369

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 106/335 (31%), Gaps = 17/335 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A+       PI  +    +   +    ++    + 
Sbjct: 32  LVVLATLAVGYTLWATQAVILPVLLAVFFALVGNPILRALGHIRIPRAIGALLLLCFGIS 91

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++ +                      Q      R ++     +              
Sbjct: 92  GTVVLSVELAGP------------ASEWIQQAPDKIRQVARQVRHLTRPMQQANQAVESL 139

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +     ET  ++  +           M      +S++ +I+  FFF   G  + ++  +L
Sbjct: 140 ARAADGETERQSQTVRTRLYNPYTLLMDTHKLVISVLGVILLTFFFMVFGEKLQRKAIAL 199

Query: 192 GEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
             +     +   I R +   I    L +++I    GL+      L  +     +  G + 
Sbjct: 200 LPNHHQQRFTASILRNLEHEISRYVLTISVINALVGLIFSGLLLLLSIPLQEALLWGTVV 259

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + +   L+       A    L   +   +  + + P ++G  + 
Sbjct: 260 ALLNFAPYVGPLIGVLLMLLIGLVQFHESSRALLPALLYLMLHTLEGQLITPIILGHRMA 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +  L     L+      GL+GL +   ++  I ++
Sbjct: 320 ISPLMLIVALLLFGSLWGLIGLLLAVPMLVCIKMV 354


>gi|300711171|ref|YP_003736985.1| hypothetical protein HacjB3_09050 [Halalkalicoccus jeotgali B3]
 gi|299124854|gb|ADJ15193.1| hypothetical protein HacjB3_09050 [Halalkalicoccus jeotgali B3]
          Length = 326

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 121/335 (36%), Gaps = 21/335 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +   +    L+ LY L  F   VL+A+++ +   P++     +         V
Sbjct: 1   MNKQRGFLLLAVCLSFLLGLYVLLPFLEYVLAAILLAYVLHPLHVRLAPRIGPR--LSPV 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +     +   + P  ++F   + +++ + +                 +    +   E   
Sbjct: 59  VLIGFSLVAVVAPFAYVFAALVRDLRAIAA----------------GESGLRVAEVEGTI 102

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +                  +      +      L     +  ++  L++  +DG   
Sbjct: 103 ATYTGRSVDLERWIRVGAETIFEVSFSGLAELFGAALKASFGLALVLFLLYYLLKDGACF 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L      L P    ++   +     +  +G   +A  +G+  G    LAGVP  V  
Sbjct: 163 VAWLKETTP-LPPDVTDRLYCRIDATTWAVIVGHVFVAFVQGMAGGIGLLLAGVPDPVFW 221

Query: 245 GVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             +  ++A++P     + +    +YLL+ G+ +    L ++G + + ++D  +RP ++  
Sbjct: 222 TAVMILLALLPLIGAFLVWAPAGVYLLLIGHPYAGLFLLVYGIVVVSMIDNYVRPIIIDA 281

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLF-IGPVLMAL 337
             +L       G+ GG+ ++G +G   +G +   L
Sbjct: 282 RARLNPGVILVGVFGGIYSLGFVGPIALGVLGATL 316


>gi|295134599|ref|YP_003585275.1| hypothetical protein ZPR_2757 [Zunongwangia profunda SM-A87]
 gi|294982614|gb|ADF53079.1| membrane protein, UPF0118 [Zunongwangia profunda SM-A87]
          Length = 362

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 127/351 (36%), Gaps = 18/351 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + + ++L  LY ++     +  A II     P+      + +  +    +I  +
Sbjct: 12  RAAGIALGIMLMLFFLYEIQSVIVYIAVAAIISLIGRPVVIFLRQRLKIPNQIAVIIVLL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +F+  +L      + + + L           I +  + SD+         +     
Sbjct: 72  LVLAIFVGIILVFVPIVIEQSQYLGR---------IDIEAFKSDLNDLNGQINDYLGVEE 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +    F+++  +  IP+F +    I     +++  +I   FF  +D   +   +
Sbjct: 123 INIIESLKESQFIRSLDVSLIPKFLNNVFGILGATIVALFSVIFISFFLLKDSKLMLNSI 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                      + ++   +  ++   F+G+T+      ++      L  V + VA+  I 
Sbjct: 183 LVFANRGKEQKFVRVFNKIKILLSRYFVGLTMQITVLFILYMILLTLFEVNNPVAIAFIC 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIF---------NATCLFLWGAIELFIVDKTLRPF 299
           A + ++P   P+    +    +I  N+              + L  AI   I +   +P 
Sbjct: 243 AFLNLVPYLGPVFAGILMALFVISSNLGADFQAIILPKLIYVMLGYAICQVIDNLISQPM 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  +K   L  F  ++      G++G+ +   +   I VI KES+   K
Sbjct: 303 IFGASVKSHPLEIFLIILIAGLVFGIVGMVVAVPVYTAIKVIAKESLSDYK 353


>gi|88859912|ref|ZP_01134551.1| hypothetical protein PTD2_17910 [Pseudoalteromonas tunicata D2]
 gi|88817906|gb|EAR27722.1| hypothetical protein PTD2_17910 [Pseudoalteromonas tunicata D2]
          Length = 362

 Score = 97.7 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 100/333 (30%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      ++L  +        P L +L +     P+ +     +         +A +
Sbjct: 11  KRMLILAATVVVLAGVKAASVVIVPFLLSLFLAIICNPLINICARYRIPK-----GVAVI 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L ++  + L       + +    +            W  ++           + L 
Sbjct: 66  LVILLIVLLGMSLAGLVGQSLNDFSRNIPEYKIKLQQEFVWAVEVAAKYNILLNKEQILE 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                K++        G+  +        +  +        +   +     D     +Q+
Sbjct: 126 LFDPGKVIDMASNMLAGLGGVMANLFLIILTVVFMLFEAPVIGKKVHLALDDPQMKMRQI 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D                   + + +     T++++  G+++G   W+  V   V  GV+ 
Sbjct: 186 DRFL----------------ESVNAYLAIKTLVSLATGVLVGLLLWILSVDYFVLWGVLA 229

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP    I       +  LI      A  +         ++   + P  +G  + L
Sbjct: 230 FMFNYIPNIGSIIAAVPAVLLALILQGPAVAGMVGFGYIAINTVMGNVVEPKYMGRGLGL 289

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             L  F  L+     +G +G+ +   L  ++ +
Sbjct: 290 STLVVFLSLIFWGWLLGTVGMLLSVPLTMIVKI 322


>gi|313610346|gb|EFR85574.1| YubA [Listeria monocytogenes FSL F2-208]
          Length = 228

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 82/205 (40%)

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           +              +  L+I+   + LF+  +DG  +   L  +      A+ +++   
Sbjct: 1   NSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLPVNGRAHTRQVLGE 60

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
               I S   G  I+++  G++L   Y + G+P  + L +I A  +++P   P      +
Sbjct: 61  ANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPA 120

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + I  + +    L +   +   +  K + P ++G  +K+  +   F ++      G+L
Sbjct: 121 IIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILVAGNLFGIL 180

Query: 327 GLFIGPVLMALIAVIWKESIMAIKE 351
           G+       A++ VI     +  K 
Sbjct: 181 GVIFAVPGYAVLKVIVTHVFIWFKR 205


>gi|239616654|ref|YP_002939976.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
 gi|239505485|gb|ACR78972.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
          Length = 688

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 82/254 (32%), Gaps = 3/254 (1%)

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
               + +++             +       +L       +  + +               
Sbjct: 433 NWLAYTNELLDWFNVKRETKASILLTTRTFLLELKVKLRDYTNSMLEKIPNIASETFTIV 492

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
             ++   I   F++     ++ +L       +        R +   ++   L +  IA+ 
Sbjct: 493 FFVVIGSIYTSFYFAFFKRLAPKLY---PRQYRRIAANFLRELHGNMKRYILSILFIALI 549

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            G+ +G      G+   + +G   AI  ++P    I      I L+      +   +F+ 
Sbjct: 550 VGITVGLLIKFLGLGYSLLIGFWAAITNLVPVVGVIFEIVPIILLIAAQPSLSGLIIFVI 609

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I +      +   L+G   ++  +     ++   + +G+LG F+   +  L+  +WK 
Sbjct: 610 ALIAIHSAAFIIFLKLMGDYNRVNPVMVILLVLFMGQLLGILGAFLAAPVAILLKQLWKH 669

Query: 345 SIMAIKENKEKISS 358
                 E++  ++ 
Sbjct: 670 FFEPWLESENSVNE 683



 Score = 43.1 bits (100), Expect = 0.066,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS-LYFLKGFFAPVLSA-LIIGFTSWPIYSSFISKKEES 58
           M+ +      +     +++ +   ++ L    A V+ A L+I F          +K +  
Sbjct: 1   MKRSNKGRLFVALLTFLYLFIAFMIFLLSPTTAIVVLATLVIVFIVVTWAKFATTKLKIK 60

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
                +I  +SV    I+ + F+    + ++    + V+   
Sbjct: 61  RALALIIGLLSVFLTIIMIMFFIVPLVLKQVPNFYNLVLDFF 102


>gi|302392163|ref|YP_003827983.1| hypothetical protein Acear_1408 [Acetohalobium arabaticum DSM 5501]
 gi|302204240|gb|ADL12918.1| protein of unknown function UPF0118 [Acetohalobium arabaticum DSM
           5501]
          Length = 355

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 113/318 (35%), Gaps = 8/318 (2%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +     PVL      +   PI   F ++    +  + +   + ++   +V + F     
Sbjct: 36  VISIILLPVLLGGFFYYLLRPIVRFFTARVNSKNLAILITGLLIIIAAVVV-IYFGGSII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E+++L++   L  +        +  +  G                             
Sbjct: 95  YTELEKLINYFSLNYEVIRENISRIIKLGNGHLDFLSDFNIQKRLLGFAQRMLEKFSNYN 154

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                   +  G I +        +   +F+F +D   I   L S          K++ R
Sbjct: 155 FMGAFSSLTNLGTIVV-------LIPFVVFYFLKDDHKIYYLLLSWFTEENKPQAKRMLR 207

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + + +      I+A   G  +   Y L G+P+ +AL +I AI +++P   P      
Sbjct: 208 EIDEALATYIGTQLIVAFILGSFMFVGYLLIGLPNSLALALIIAITSLVPILGPALGILP 267

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++++ +  N      LF+  A+  ++    +RP + GG + +  L   F ++  +   G+
Sbjct: 268 ALFVALTTNFLMIVKLFIVLAVAQYLEGNLVRPIVQGGKLNIHPLVVLFLIIISILLFGV 327

Query: 326 LGLFIGPVLMALIAVIWK 343
           LG      +  ++ +I +
Sbjct: 328 LGALFVVPIYVVVRIIIE 345


>gi|255655063|ref|ZP_05400472.1| hypothetical protein CdifQCD-2_05080 [Clostridium difficile
           QCD-23m63]
 gi|296451050|ref|ZP_06892792.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296880597|ref|ZP_06904559.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
 gi|296260057|gb|EFH06910.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296428551|gb|EFH14436.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
          Length = 350

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 40/319 (12%), Positives = 101/319 (31%), Gaps = 2/319 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + + I  ++ + +Y    + AP     II     PI     +K   +     ++ +   +
Sbjct: 17  IFFCIYTLLFIFIYKAFPYIAPFFLGGIIALMINPISQKLENKFHINKGISTLVLSFLAV 76

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +       +    + E+   ++ +    +       +   +       + + +  +   
Sbjct: 77  AIVSTVTTIIVINSVKELMGFLNNISANPEDISNTIMYF--LNKINDFMKSFQEIANFDI 134

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   +         +               + II + IA +F  +D   I     ++
Sbjct: 135 EQLVNKFSGEVMQITKNLLTSILGLATSIPYIIIFIITLFIATYFIAKDLDKIENSFYNM 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    K + +     +       TI+       +  ++ L G+   + +G + A+M
Sbjct: 195 FTVDVRKKVKNVKKEAGLSLVGYIRAYTILMAITFFAIWGSFALFGLKYGLIVGFVGALM 254

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP    I+     I        +            L ++ + L P LV   + L  L 
Sbjct: 255 DLIPFLGIITIYLPVIVYYFLIKNYFIAISMTVIFFVLSLIREILEPKLVSVNVGLNPLA 314

Query: 312 TFFGLVGGVRTMGLLGLFI 330
           T   +  G++  G++G+  
Sbjct: 315 TLAAIFIGIQVKGIIGVIF 333


>gi|119511687|ref|ZP_01630792.1| hypothetical protein N9414_06044 [Nodularia spumigena CCY9414]
 gi|119463672|gb|EAW44604.1| hypothetical protein N9414_06044 [Nodularia spumigena CCY9414]
          Length = 365

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 115/328 (35%), Gaps = 13/328 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++  ++I + L   +      + A ++ F        F  K   +  +   +  +S +
Sbjct: 20  IVFLNFWLIFLFLKSFQELVTIFILATLLAFILNYPVKFFE-KAGVNRNYAVALVLISAL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F V  + L    + +  E+V  +           + L++       +  +++ +S   
Sbjct: 79  VIFAVFGIVLLPIILPQFNEMVKLLPQWIDASGEKFQLLNNWAISHGLNINFSEIISDFT 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         ++ I        +  +D    I+  ++  F+   D   I   +   
Sbjct: 139 ERLPNE--------LENITDNLFSIFIETVDSVSDILITVVLTFYILLDSPRIWSGIFKK 190

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F     K+ R + +  ++  +G   +A   G +L   + +  V   +  G+   I 
Sbjct: 191 LPWSF---TDKVQRSLQQNFQNYLIGQVTLASLMGCLLTVIFLVFQVQFGLIFGLGVGIF 247

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           ++IP    +   ++   ++   N + A  +     +    +D+ + P L+G    L  + 
Sbjct: 248 SLIPF-GDVVSISLITLIIAAQNFWLAVKVLAVAVVTDQFIDQAIAPRLLGKFTGLRPIW 306

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               L+ G    GLLGL I   +   I 
Sbjct: 307 VLVALLLGTSIGGLLGLLIAVPIAGFIK 334


>gi|15675097|ref|NP_269271.1| hypothetical protein SPy_1117 [Streptococcus pyogenes M1 GAS]
 gi|28895889|ref|NP_802239.1| hypothetical protein SPs0977 [Streptococcus pyogenes SSI-1]
 gi|71903480|ref|YP_280283.1| hypothetical protein M28_Spy0815 [Streptococcus pyogenes MGAS6180]
 gi|94988588|ref|YP_596689.1| hypothetical protein MGAS9429_Spy0958 [Streptococcus pyogenes
           MGAS9429]
 gi|94992411|ref|YP_600510.1| hypothetical protein MGAS2096_Spy0914 [Streptococcus pyogenes
           MGAS2096]
 gi|94994386|ref|YP_602484.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
 gi|13622254|gb|AAK33992.1| hypothetical protein SPy_1117 [Streptococcus pyogenes M1 GAS]
 gi|28811139|dbj|BAC64072.1| hypothetical protein [Streptococcus pyogenes SSI-1]
 gi|71802575|gb|AAX71928.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS6180]
 gi|94542096|gb|ABF32145.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS9429]
 gi|94545919|gb|ABF35966.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS2096]
 gi|94547894|gb|ABF37940.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10750]
          Length = 382

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 111/338 (32%), Gaps = 13/338 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P        +    + S++               +       ++A ++   L    +  
Sbjct: 47  LPFFYGAAGAYIVNIVMSAYEKVYVYIFKDWSHVLKVKRGICLLLAYLTFFILITWIISI 106

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L     +  Q  +        +   +       K      +        
Sbjct: 107 VIPDLITSISTLTKFDTITIQEVVNNLEHNKLLARTIQYIGGDGKLTETIANYSQQLLKQ 166

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T   + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 167 FLTVLTN-ILTSVTVIASAIINLFISFVFSLYVLASKEDLCRQGNTLVDTYTG-KYAKRI 224

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++ +     F+  T+ A+  G +  S  ++  +P    +GV+ A  A+IP     
Sbjct: 225 HYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLPFAGTIGVLVAFTALIPVIGAS 284

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 285 IGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPKVVGGSIGLPAMWVLMAITIGA 344

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++G+ I   L A +  + K++I   +  ++K  S
Sbjct: 345 SLKGIVGMIIAVPLAATLYQVIKDNIQKRQAIQKKQVS 382


>gi|291282733|ref|YP_003499551.1| putative permease, PerM family [Escherichia coli O55:H7 str.
           CB9615]
 gi|209769938|gb|ACI83281.1| putative transport protein [Escherichia coli]
 gi|209769944|gb|ACI83284.1| putative transport protein [Escherichia coli]
 gi|290762606|gb|ADD56567.1| Putative permease, PerM family [Escherichia coli O55:H7 str.
           CB9615]
 gi|320641955|gb|EFX11319.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H7 str.
           G5101]
 gi|320647271|gb|EFX16079.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H- str.
           493-89]
 gi|320652564|gb|EFX20833.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H- str.
           H 2687]
 gi|320653085|gb|EFX21279.1| pheromone autoinducer 2 transporter [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320668624|gb|EFX35429.1| pheromone autoinducer 2 transporter [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 344

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSTLNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+           +        +I + +
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFKQMMARPVEGMAAIQRAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV  +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|330960589|gb|EGH60849.1| permease [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 260

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 89/228 (39%), Gaps = 3/228 (1%)

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I        + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++
Sbjct: 23  DKIKAAISEHMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKI 82

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L          K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI 
Sbjct: 83  RGLLPRQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIA 142

Query: 249 AIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            + A++P    +       V+      G+++    +     I   +    L P LVG  I
Sbjct: 143 GLAAIVPYMGFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRI 202

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 203 GLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 250


>gi|293400449|ref|ZP_06644594.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305475|gb|EFE46719.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 363

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 95/323 (29%), Gaps = 25/323 (7%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
           F P+LS +++ F   PI      K         ++  + ++ +    L  L      +  
Sbjct: 45  FLPILSGVLLAFFLQPIIDRVQQKFSLK--VSVMLVYIGLLAILGAFLAVLLPLLYQQAL 102

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           EL   V    Q      +        +                       LK N +    
Sbjct: 103 ELAQLVPRWLQQLEGFLKQHHIAYDNL---------------------NTLKQNYMQEGY 141

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A       +D         I  FF   D     +    +  ++           +  +
Sbjct: 142 IIAIDSAKSVIDTLTDYGIAYIIAFFISIDMDFWKRTAKKIVPNVTR--VATFYHTLSNI 199

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
           I     G  +  +   + +G    L   P+ +   +I A++ + P         +   + 
Sbjct: 200 IYQYLAGTMLDLLFIIVSVGIVLSLYRFPNALLYAMILALLNLFPYVGATLGLILIAAVA 259

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
                     +F        I    ++P +    + +  L TF  +       G++G+ +
Sbjct: 260 ALHYDHYPWMMFFIVWSIQQIESNIIQPLIFNRTMNVRPLLTFVFIFISDAFFGVIGVIL 319

Query: 331 GPVLMALIAVIWKESIMAIKENK 353
            P+  A+  ++++  + +   +K
Sbjct: 320 SPIFAAVAQIVFRSYLHSKTSDK 342


>gi|254784901|ref|YP_003072329.1| hypothetical protein TERTU_0707 [Teredinibacter turnerae T7901]
 gi|237683572|gb|ACR10836.1| conserved domain protein [Teredinibacter turnerae T7901]
          Length = 357

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/346 (12%), Positives = 98/346 (28%), Gaps = 22/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M       + ++      +++  +   +    P L +L I     P       K      
Sbjct: 1   METHSPIARFLLGLAAFVVVVAGMKSAETLLVPFLLSLFIAVICTPPLMWLKGK-----G 55

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A + V+   +V  + +       + +  + + L       +   L      +   
Sbjct: 56  LPGWLAMLIVVANVVVLGVLIGIVVGAAISDFRADLPLYQARLSDLTGGLITRLSELGLH 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T+  S       LS        +  +   A    +  +                   
Sbjct: 116 VDPTQIRSSFNPAAALSLAGNTLASLGNLMTNAFLILLTVVFIL---------------- 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +                 K        +        +++   G ++    W+ GV  
Sbjct: 160 GEEVGFSDKLQSSSRNSQKTIKAINQFSAGVNRYMAIKALMSFLTGTLILIWLWILGVDY 219

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G++  ++  +P    I     ++ L +    + +A    L   I  F V   + P 
Sbjct: 220 FVLWGLLAFLLNFVPTLGSILAAVPAVLLAVVQLGVGDAVLTGLGFLIVNFGVGNIIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           ++G  + L  L  F  LV     +G +G+ +   L   + +  +  
Sbjct: 280 MMGKGLDLSTLVVFLSLVFWGWVLGPVGMLLSIPLTMTVKIALESF 325


>gi|218961758|ref|YP_001741533.1| hypothetical protein CLOAM1477 [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730415|emb|CAO81327.1| conserved hypothetical protein; putative membrane protein
           [Candidatus Cloacamonas acidaminovorans]
          Length = 352

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 117/325 (36%), Gaps = 12/325 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L  LK  F P++ ++ + F   P+ +     K        V+  +  + +  V L  +
Sbjct: 24  YILKTLKSIFIPLIFSIFLLFLFAPLINYLKKHKFP-----MVLILLITLVIIAVFLGLV 78

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                     L++ +         +        G  +   L T    + +++ I +   +
Sbjct: 79  ILLIYAASNSLINGLPRYEDKFNALIAK-----GTEYLQNLATNWNINTENISIANIAQI 133

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            ++GI  IP+F S      +    +I  +I  L F   +   +  +L      L      
Sbjct: 134 LSSGIISIPQFLSNTVNTLVSIIQNIFLIIFFLIFLLLEIDKLPLRLRKATSKLSKEQTL 193

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I + + K I++     T++ +   L+      + GV   +  G++  ++  IP    + 
Sbjct: 194 DILQNIEKQIQNYLTIRTLVNLSAALLCMLWMLIFGVDFILVCGILLFVLDFIPDVGSVI 253

Query: 262 --FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                + IYL+  G  F      L       ++   + P L G  + L  +     L+  
Sbjct: 254 SSAIPILIYLMQSGFSFLWLIFALLIVATQMLIGNIIEPKLQGVQLNLTPIMVLVSLIFW 313

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               G++G+ I   L + I +I K+
Sbjct: 314 GWLWGIVGMLICVPLTSAINIILKQ 338


>gi|331652992|ref|ZP_08353997.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M718]
 gi|331049090|gb|EGI21162.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M718]
          Length = 344

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 101/337 (29%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                 +
Sbjct: 127 YIDPKAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPAEGMAAI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                                 +    +  T I+I  GLV  +      V      G++ 
Sbjct: 187 QRAI----------------DSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|317129913|ref|YP_004096195.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474861|gb|ADU31464.1| sporulation integral membrane protein YtvI [Bacillus
           cellulosilyticus DSM 2522]
          Length = 370

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 88/299 (29%), Gaps = 10/299 (3%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  P L  LII     P  +   +K   + +   ++  V  +  F   +  L    +  +
Sbjct: 33  YLYPFLIGLIISLIFLPAVNFIENKFGWNRSSAVLLIIVFFILTFSALITLLVAEIVAGL 92

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL-------- 141
             L  ++      GI       D         L           +      L        
Sbjct: 93  SYLTKELPTYIHDGIEFIHLWFDTYLLPIYEGLIAFSSQLDPGQQTTIHQSLERLLSNFG 152

Query: 142 --KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              +N I ++    + F M   +    + F ++  FF  +D  ++ Q L+S         
Sbjct: 153 EQMSNIIQYVLNGFADFLMALPNTITVLFFALLGAFFITKDWPTMMQWLESKTPKKIKVI 212

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +++    K I        I+    G+++     + GV   +   ++ AI+ ++P    
Sbjct: 213 ANRMTEQWKKAIVGYVFAQLILVSMTGVIVFIGLLIIGVDYAITTALLIAIVDLLPYLGT 272

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                  I        +            + I      P ++   + +P L     L  
Sbjct: 273 GLVFIPWILYTFFSGHWGLAIGLSILYAIVIIQRNLAEPKVMSKHMGIPPLALLVSLFA 331


>gi|116624022|ref|YP_826178.1| hypothetical protein Acid_4934 [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227184|gb|ABJ85893.1| protein of unknown function UPF0118 [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 359

 Score = 97.7 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 113/315 (35%), Gaps = 13/315 (4%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +        AL+  +   P+ +           T    +A V  + L ++ +  +    +
Sbjct: 33  RSTLFVFTLALLFAYLLSPLVNLLDRALPNRTRTVALALAYVIFIGLAVLVVTQVGVRVV 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            + +    K+                      ++      L       I SE + +T+ I
Sbjct: 93  AQAQAASKKLPDMMAK----------WEEPSPSAPENVNTLKARVVQTIRSEMYKRTSDI 142

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH-LFPAYWKKISR 205
                 AS   +      + ++ + +  FFF +DG  I   + S+ +     A    +  
Sbjct: 143 LNALPGASLKFLEVASDVIYVVIVPVLAFFFLKDGELIRVHMLSVVDAGPLRAMVDSLLE 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +  ++      + ++++   +    A+ + G+P  + L V+   +  IP   P++  A 
Sbjct: 203 DIHLLLAHYMRALVLLSLNTFVFYSVAFTIMGMPFGILLAVMGMCLEFIPMIGPLTAAAA 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + +       +   + ++      + D  + P L+G  ++L  L   FG+ GG    G+
Sbjct: 263 ILIVAAVSG-ASILTVLIFLVAYRMLQDYFVSPHLMGQGVELHPLLVLFGVFGGAEVAGV 321

Query: 326 LGLFIGPVLMALIAV 340
            G F+   ++AL  +
Sbjct: 322 AGSFLSVPVLALARI 336


>gi|228473499|ref|ZP_04058252.1| putative membrane protein [Capnocytophaga gingivalis ATCC 33624]
 gi|228275106|gb|EEK13909.1| putative membrane protein [Capnocytophaga gingivalis ATCC 33624]
          Length = 358

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 119/351 (33%), Gaps = 22/351 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + + ++ ++LY L+     ++ A ++     P+      + +  +T+  V A  
Sbjct: 12  KAVGIMVGIVLLALALYKLQNIIIYIVLAAVLALIGRPMVGFLKRRLKFKNTWATVTAIA 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M  F   +       + + K L S           +   +      +  S    +  S
Sbjct: 72  IIMSFFAGIISLFVPLLISQGKNLASI------DFKALNDNVHRFLDNLLHSLGMGRIES 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++  L      ++ ++      S  G+                FFF +DG +IS+  
Sbjct: 126 QVGNIPELLNIEDISSVLNGFIGVISNIGIGLFSVL-------FIAFFFMKDGTAISEGF 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL +       ++    +  ++   F+G+ +      ++L     + GV   + +  + 
Sbjct: 179 LSLVKPKRLPKVRETLEDIKTILSRYFVGLFLQLSVVFILLTIVLLIFGVKDALIIAFLC 238

Query: 249 AIMAMIPGGAPISFTAVSIYL---------LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           A++ +IP   P+    V   L         L    +     + +      FI +   +P 
Sbjct: 239 ALLNLIPYVGPMIGAVVISVLTISNFMDADLQSVILPKTLYVLIGFFFTQFIDNVFSQPI 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F   +      G+ G+ +      ++ VI K      K
Sbjct: 299 IFSNSMKSSPLEIFIVTLVIGTLFGIAGMVVAIPAYTVLKVILKAVFPNNK 349


>gi|189462559|ref|ZP_03011344.1| hypothetical protein BACCOP_03249 [Bacteroides coprocola DSM 17136]
 gi|189430720|gb|EDU99704.1| hypothetical protein BACCOP_03249 [Bacteroides coprocola DSM 17136]
          Length = 338

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 113/307 (36%), Gaps = 22/307 (7%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            + F   +L    +        +   +K          + T+ V    ++P+    +  +
Sbjct: 25  AQPFMNGILGGFTLYILLRNFSNWLQTK--IKPLLAVWMITIGVTLFILIPVSLFSWAIV 82

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++  +        Q    V   + +  G    SE                     +  +
Sbjct: 83  SQISGMHFDTQAIIQPAHQVIDIIEERTGFDLLSE------------------KSLSFMV 124

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                   +      D  +++   I+ +FF   +G  +   + ++      +  +++   
Sbjct: 125 VQASSIGQKIMTGVSDLIVNLAVAIMLMFFMLWEGRKMEHYVSTIMPFE-ESNKREVLNK 183

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAV 265
           +  ++RS  +G+ ++A+ +G++    Y L   P+     ++TA  ++IP     + +  V
Sbjct: 184 IQLMVRSNAIGIPLLAVIQGIISLGGYLLCDAPNPYLTALLTAFASIIPLVGTALIWIPV 243

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           SIY LI G   NA  L  +G I +   D  +R  L      +  L T FG+V G+   G 
Sbjct: 244 SIYFLIMGEWINALILLGYGGIIISQCDNLIRFLLQKKMANIHPLITIFGVVAGLPIFGF 303

Query: 326 LGLFIGP 332
           +G+  GP
Sbjct: 304 MGIIFGP 310


>gi|256829469|ref|YP_003158197.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578645|gb|ACU89781.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 379

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 107/355 (30%), Gaps = 11/355 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +   +++ ++ +L +L     P   AL++ +   P+         +S      +   
Sbjct: 15  RMALAAGLLWGVITTLGYLSDVLIPFAVALLLAYILNPLVYRVQ-MFVKSRGLAIGLTLF 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA-SELWTKHL 127
               +       +      E   +   +     +        + +P  +W     +    
Sbjct: 74  FFFAVLGGLCWIVIPLMGREAAHMGRLISDLVSNSKLAEEAANRLPPDVWQALRDYFDTP 133

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS---IIFMIIALFFFYRDGFSI 184
                 +  S   +  + +  +               L+      +++ L F   D   +
Sbjct: 134 EVRNFFRTDSFISMAQSTLRKVLPGLMGIISGTYSVLLALVVPAVVLLYLIFLLMDFQKV 193

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                 +    +              +   F G T IA   G+   + + L G+P  + L
Sbjct: 194 RVAWKEMIPPQYRDSVVSFVEEFDVAMNRYFRGQTTIAGILGIFFATGFSLVGLPMGILL 253

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLI------KGNIFNATCLFLWGAIELFIVDKTLRP 298
           G    ++ ++P    I      +   I      +          L   +   I D  L P
Sbjct: 254 GFFVGLLNLVPYLQLIGLIPAVVLAAIHALETGQSFWVVMGMTGLVFVVVQIIQDAVLVP 313

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            ++G  + L        L    + +G+LGL I   +  L+   ++  ++A   ++
Sbjct: 314 RILGKAMGLSPAVMLLSLSIWGKLLGMLGLLIALPMTCLVLAYYRRLVLAPAASR 368


>gi|164688740|ref|ZP_02212768.1| hypothetical protein CLOBAR_02387 [Clostridium bartlettii DSM
           16795]
 gi|164602216|gb|EDQ95681.1| hypothetical protein CLOBAR_02387 [Clostridium bartlettii DSM
           16795]
          Length = 363

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 101/320 (31%), Gaps = 3/320 (0%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             L     P L A II     P+      K   +   ++++  ++   +    ++ +   
Sbjct: 34  KVLGSILTPFLIAFIIAAILNPLIKFSCKKLHINRAIISILFVLTFYTVASFIIILIGSK 93

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            ++ ++ L + +              +          L    +S  +       + L   
Sbjct: 94  LLVLLQSLFTTLPQFFTTYFEPYIRDTFTHFEKLFLSLDPNVISALEESSSSLISTLGNF 153

Query: 145 GIDF---IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              F   +  + S F        L  +  II  FF   D   I   +            K
Sbjct: 154 VSKFSTMVVSYVSGFATTIPAIFLKTVITIIVTFFITIDFEKIINFIKRQLPESASKPIK 213

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           +  + +   +    L   +I       +     +  +P+ + + V+ AI  ++P      
Sbjct: 214 ESKKFITTTLFKCLLSYVLILSITFTEIAIGLTILQIPNAILIAVVIAIFDILPVLGTGG 273

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                  + +    +          I + I+   + P LVG  + L  + T   +  G+ 
Sbjct: 274 IMIPWAIIALLYGNYTIGIGVAILYIIITIIRNIIEPKLVGQQVGLHPVVTLISMFVGLH 333

Query: 322 TMGLLGLFIGPVLMALIAVI 341
            +G +G+   P+ +AL+  +
Sbjct: 334 FLGFIGMLGLPITIALLRYL 353


>gi|116327615|ref|YP_797335.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116331774|ref|YP_801492.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120359|gb|ABJ78402.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116125463|gb|ABJ76734.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 355

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 48/349 (13%), Positives = 117/349 (33%), Gaps = 14/349 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +++F  +VSL+ L+    P++ AL+I +T   + +   S           I  +
Sbjct: 15  RTSFFLIVVFTTVVSLWGLQLLAVPIVLALLIFYTFNGMINDLES-LGVPRILSIAILML 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                  + +  +       +  L+                ++           W + + 
Sbjct: 74  FTSIPIYLFINSVASPIASTLNPLLKNWKQDLDDAKFKYLTVTVNLQFNEFPASWNETI- 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L     + +      F          ++   +  F F  +G  I + L
Sbjct: 133 --------RPDELIKKIAELMHEQVKGFVSYIPTLIGYLLITPLFAFLFLLNGNGIYKSL 184

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL  + +      I+  + + + +    + I ++    V    +++ G+P     G+  
Sbjct: 185 ISLIPNRYFEMALMITYKINEQLTNYLKSLMIQSMIICAVSSLGFYIIGLPYFYIFGLFL 244

Query: 249 AIMAMIPGGAPISFTAVSIYLL----IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            I   IP   PI      ++        G       + +  +I   I +  ++P ++ G 
Sbjct: 245 GIANSIPYLGPIMGAIPPLFFALVIGGAGTTGLMISILIVVSIAQIIDNFLVQPVVISGS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + L  +     +  G   +GL+G+ I   + A++ V  +    ++K++ 
Sbjct: 305 MSLHPIVIVGAVTVGGAALGLVGMLIAVPMAAILKVTIQTLYSSMKDHN 353


>gi|326625322|gb|EGE31667.1| UPF0118 inner membrane protein yhhT [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 339

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 109/332 (32%), Gaps = 22/332 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++   G    +L AL       P+ + FI +  +       +A   
Sbjct: 3   ILLKLASLVIILAGIHAAAGIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 57

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 58  VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 117

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S KI+  T     G+           M  +     +  +   L F   +       L 
Sbjct: 118 MDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKLRFALNNPQIHIAGLH 177

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G ++     L  +   +  GV+  
Sbjct: 178 RAL----------------KGVSHYLALKTLLSLWTGAIIWLGLALMDIQFALMWGVLAF 221

Query: 250 IMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  +P     IS     I  L+    +    +     +   ++   + P ++G  + + 
Sbjct: 222 LLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLLVHMVIGNIMEPRMMGHRLGMS 281

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            L  F  L+     +G +G+ +   L ++  +
Sbjct: 282 TLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 313


>gi|296532431|ref|ZP_06895157.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
 gi|296267241|gb|EFH13140.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
          Length = 342

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/354 (12%), Positives = 106/354 (29%), Gaps = 19/354 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAV 64
           +  + +   ++   + + L+ +      V +A ++G   +                    
Sbjct: 1   MTRRRVSLLVLAVGLGLLLWQVPQLPLLVFAAALLGVFLYAGADRLRRLVPRLPHGAAVG 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +++  LF             ++  L  +V  A                         
Sbjct: 61  LFILALALLFGGAGWLAAAPIAEQLNTLWQEVPRAAAGLADRLSDYQ------------- 107

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     +      + +        A            +++ +     +F  D    
Sbjct: 108 -----WGQELLRRLNAGEMSLPQGGGSTAMVAVNTTFGALANVVLVGFLGLYFALDPALY 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +++L           + R     +R       +  +  G++ G+  WL G P    L
Sbjct: 163 RRGIEALLAPSLRPRAHALCRESAATLRGWLGAQLVSMLVVGVLTGTGLWLIGTPLAPVL 222

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           G+I A++  IP   P+     ++ L +   +  A  +     +   I    + P++    
Sbjct: 223 GMIAALLTFIPTLGPVLAAVPAVLLGLADGVSGALSVVAVYLVVQTIESYFITPYVQKRS 282

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           + LP   T   LV      G LG+ +   + AL+ ++ +   +    ++E    
Sbjct: 283 VDLPEAATIIALVAFGLLFGFLGMLLATPMAALLLMLVRRLYVEDYLDQEPPEE 336


>gi|240138067|ref|YP_002962539.1| hypothetical protein MexAM1_META1p1400 [Methylobacterium extorquens
           AM1]
 gi|240008036|gb|ACS39262.1| conserved hypothetical protein, putative permease [Methylobacterium
           extorquens AM1]
          Length = 392

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/347 (10%), Positives = 94/347 (27%), Gaps = 26/347 (7%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + S ++       +             +   IA++ +  L +    F       + ++L 
Sbjct: 45  IFSGILFAVFLDGVTRGLGYVLPIGRGWRLAIASLVLAALALGLTAFGGATVASQARDLG 104

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT---------- 143
           + V   ++      +           +          +      +T              
Sbjct: 105 TTVRQQSETVRDWLKERGVEIDLSQGAPAEAGQGGEGKGQDTGKDTGKDAGKDKNEKEGG 164

Query: 144 ----------------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +    +   A+   +   +   +++ ++        D  S    
Sbjct: 165 LAGLASGALKSSGSLLSDAGSVLGPAATVVIALFNALGNVLVIVFLGVAIAADPGSYRDG 224

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L          ++     + +R    G  +      ++  +     G+   + LG+ 
Sbjct: 225 ALRLVPPRHREKGARVLDGSGETLRHWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQ 284

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++A +P   P+    V +   +   +                    L PF+    + L
Sbjct: 285 AGLLAFVPTIGPLIAGLVIVLSSLASGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDL 344

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P    F G +      GL G+ +   L+A+I V+ +E  +      E
Sbjct: 345 PAATIFAGQLLLGVLFGLWGVALALPLVAVIKVLLEELYIEDGAEAE 391


>gi|149374611|ref|ZP_01892385.1| hypothetical protein MDG893_11201 [Marinobacter algicola DG893]
 gi|149361314|gb|EDM49764.1| hypothetical protein MDG893_11201 [Marinobacter algicola DG893]
          Length = 387

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/315 (13%), Positives = 91/315 (28%), Gaps = 18/315 (5%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           I +   P+ ++    K       AV+  +      I  +         E   ++ K+ +A
Sbjct: 62  ISYALEPLVAAINRLKVPRPLAAAVVLILL-----IGIIAGASIPLKQEAMAMLDKIPVA 116

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF---------IP 150
            +               M              +           +G            I 
Sbjct: 117 IEQFQKNEASRPKDGESMMEKAQSAAKKIEATASPDRDNGDASQSGATPVRVVDEPLEIK 176

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVP 208
            +  +     L         ++ ++F    G    +++  +    F    K  +I     
Sbjct: 177 DYVLQGSPAALVLISQCFSALLLVYFVLAIGSLYRRKIVKISGPSFARMRKAARIMNEFH 236

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +R     M + A+  G++   ++   GV      GV+  I + +P   P      +  
Sbjct: 237 RSVRQFLFVMFVGAVFVGVLTWLSFMALGVEQAGFWGVLAGIASAVPYLGPFLVLMGTGM 296

Query: 269 LLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                 G +  +  +         I    L P+L      L  +  F GL+      G +
Sbjct: 297 AAFIQFGELEMSIIVAGTSLAITSIQGYLLTPWLTSHISSLNAVAIFIGLLFWGWLWGPV 356

Query: 327 GLFIGPVLMALIAVI 341
           GL +   ++ ++  +
Sbjct: 357 GLVVATPILMIVKSL 371


>gi|285017242|ref|YP_003374953.1| permease family protein [Xanthomonas albilineans GPE PC73]
 gi|283472460|emb|CBA14965.1| putative permease family protein [Xanthomonas albilineans]
          Length = 387

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 105/336 (31%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +  +L+  +    PVL A        PI                V+    + 
Sbjct: 50  LVVLATLAVAYTLWAAQQVILPVLLAAFFALIGNPILRLLRRLYLPRFLAALVVLLSGMA 109

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               + +       +         V  A      +   + D+   M  +    +  +   
Sbjct: 110 LAATLTVQLAGPAAV--------WVQQAPAQMRHIATQVHDLTKPMQLANQAAESFARAA 161

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                    +    +D   R   R   +          +++  FFF   G ++ +   +L
Sbjct: 162 GGDGGPRVQVIRTQMDDPYRALVRTPRLAASALA----VVLLTFFFMVFGENLQRHAIAL 217

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
                   +   I R + + +    L +++I    GLV      L  +     +  G + 
Sbjct: 218 LPSRQQQKFTTDILRSIEQEVSRYVLTISVINTLVGLVFAVILILLNITPQEALLWGTVM 277

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +   +  +AT   L+      +  + + P ++G  + 
Sbjct: 278 ALLNFAPYVGPLIGVVLMLLMGFVAFRDPLSATLPALFYLALHLLEGQVVTPIVLGRRMA 337

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L     L+      G++GL +   L+  I ++ 
Sbjct: 338 ISPLMLILALMLFGWLWGMIGLLLAVPLLVCIKIVL 373


>gi|167626468|ref|YP_001676968.1| hypothetical protein Fphi_0251 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596469|gb|ABZ86467.1| conserved hypothetical protein [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 339

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 123/326 (37%), Gaps = 7/326 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  I  + ++ L  F   +L A ++     P+         +     + +  + ++   
Sbjct: 11  IICIIGALVMWVLYPFVYSILFAGLLAIILAPLQEYLEQHIGKHR--SSFLLVMGILLCV 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +P+L + YY + E+   +      +Q    +   +  IP      +     L    +  
Sbjct: 69  FIPILIVLYYAISEIVSYLQHPETLSQTFATLGDSIGKIPYIGSILQEHFDKLIKAINDD 128

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             +      + +  I       G   + +    +  ++ ++ F     ++ +    +   
Sbjct: 129 SDTII----SNLGQILPKVRYVGSTSISFITDFLITLLLVYQFLVSSSTLEKFAKKVVLK 184

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
            F      IS  +    R   L + + A   G V+   + L G+P+ + L    AI +MI
Sbjct: 185 DFDDSDSFISTAII-TTRRVSLAIFLTASLVGTVMAIVFLLTGMPTPILLAFTVAIASMI 243

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    I +  +   + +      A  + + G       D  ++P ++   ++L F  +  
Sbjct: 244 PFMVGIVYILIGASVFVVYGATKAIIILVVGFALNIFTDNIMQPKIINKQVQLSFAASLI 303

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAV 340
           G++GG++  G +G+F+GPV+  +  V
Sbjct: 304 GILGGIQAFGFIGIFLGPVIFNVTFV 329


>gi|205352809|ref|YP_002226610.1| transport protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205272590|emb|CAR37497.1| putative membrane protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326627879|gb|EGE34222.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 344

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 103/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLIIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 131 --------------NAAMTLVTNLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPEKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 177 SR------PVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++     I +L+    ++A  +     +   +    L P ++   + L
Sbjct: 231 FALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMRRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|148359604|ref|YP_001250811.1| permease [Legionella pneumophila str. Corby]
 gi|148281377|gb|ABQ55465.1| transporter, permease [Legionella pneumophila str. Corby]
          Length = 352

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 107/339 (31%), Gaps = 21/339 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                ++++I    L   +G   P++ ++ +      I S         +   + I  + 
Sbjct: 7   STAGLILVWITGYLLIAGRGLLIPIVISIFVWHLLNTINSGVQKIPFIGTHLPSWIRMIL 66

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + +  ++ L       + ++++      ++ + +   L          +  +     
Sbjct: 67  SLFVVVCLVMVLINIITNNVSDVIAASPRYQENLLHIFNSLDQRFHVKGIFDFDSLIQGL 126

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                              I         +F     S + + + + F + +    +Q++D
Sbjct: 127 ------------------SIQSMLVNIYGVFTTITSSAVLISLYVVFLFVEQHYFTQKMD 168

Query: 190 SLGEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +           K I   + K  ++     T++++    +        G+       ++ 
Sbjct: 169 AFFPQAEHRKLVKNIISHITKDTQTYLGIKTLLSLLTATLSWFIMKWVGLDFAEFWALLI 228

Query: 249 AIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  IP    I       ++ L+   + +    +        F V   L P L+G  + 
Sbjct: 229 FFLNYIPNIGAIVATAFPAALALIQFESWWPFLEVTSGIVAIQFFVGNFLEPRLLGKSLN 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  L   F L       G+LG+F+   +  ++ +I+   
Sbjct: 289 LSPLVILFALALWGAIWGVLGMFLSVPITVMMMIIFAHF 327


>gi|295135659|ref|YP_003586335.1| hypothetical protein ZPR_3833 [Zunongwangia profunda SM-A87]
 gi|294983674|gb|ADF54139.1| membrane protein, UPF0118 [Zunongwangia profunda SM-A87]
          Length = 339

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 59/355 (16%), Positives = 127/355 (35%), Gaps = 21/355 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              L  Q  +  +I+F+ ++    L  +   +L A+ +           + K     +  
Sbjct: 5   RPALVRQIFVLLLILFLGILIFRELVPYLTGILGAITLYVLMASWMEKLLKK-GWKPSVA 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A +         ++P+  +      ++ + V+   +         + L +  G       
Sbjct: 64  AGVLMFGSFIGILIPVSGIIIMLTSKIGKAVNNSEMVVSAIKKQLQHLEEYVGYDI---- 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                         +     +    ++            +  +++  M   L+F   +  
Sbjct: 120 --------------TGAIDTSAISGWVSEKLQNLAGGTFNVFVAVGLMYFMLYFMLINRE 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +   L      L  A    I++    +++S  LG+ ++A  +GL+    Y + GVP   
Sbjct: 166 KMKTALIDYIP-LGKANLSTIAKESNLLVKSNALGIPLVAFVQGLIALIGYLVLGVPDPF 224

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFLV 301
               ITAI +MIP        A +  LL      +    L ++G + +   D  +R  ++
Sbjct: 225 FWFGITAIGSMIPFIGTAIGIAPTTILLFADGQNWQGVALLIYGIVVVGSTDNLIRIMVL 284

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
               K+  L T  G++ GV+  G +GL  GP+L++L  +I K          +++
Sbjct: 285 DRLAKVHTLITLVGVIVGVQIFGFIGLIFGPLLVSLFLLILKIYKKEYGNENDRL 339


>gi|309788792|ref|ZP_07683387.1| conserved hypothetical protein [Shigella dysenteriae 1617]
 gi|308923063|gb|EFP68575.1| conserved hypothetical protein [Shigella dysenteriae 1617]
          Length = 344

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 111/337 (32%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +       +++ T+
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAASILMTI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++                       N+    +P++ + I   + A E   + + 
Sbjct: 72  ILMAMVLLLAYLG---------------SALNELTRTLPQYRNSIMTPLQALEPLLQRVG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+  L+        +  +    ++         L ++ ++  L    +      Q +
Sbjct: 117 IDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 177 AR------PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|157155130|ref|YP_001462889.1| putative transport protein [Escherichia coli E24377A]
 gi|157077160|gb|ABV16868.1| putative permease, PerM family [Escherichia coli E24377A]
 gi|324119355|gb|EGC13242.1| TqsA transporter [Escherichia coli E1167]
          Length = 344

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                 +
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAI 186

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +                 +    +  T I+I  GLV  +      V      G++ 
Sbjct: 187 QRAIDC----------------VSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|323144594|ref|ZP_08079182.1| hypothetical protein HMPREF9444_01862 [Succinatimonas hippei YIT
           12066]
 gi|322415603|gb|EFY06349.1| hypothetical protein HMPREF9444_01862 [Succinatimonas hippei YIT
           12066]
          Length = 358

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/330 (14%), Positives = 116/330 (35%), Gaps = 22/330 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +     F   +L ++ +             K  +       I T++V    ++PL  
Sbjct: 23  YALILQALPFVNGILGSITLYVLLRRPNFYLARKYGKRK--SPWIITIAVTVFILIPLSL 80

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L +Y +  ++       +A +      + + +  G    ++                   
Sbjct: 81  LAWYAIELVQNFDLDPKIAIEKITTTIKKIEEATGFDLITD------------------K 122

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             +          +       ++ +++   I+ LFF    G  +   +  L         
Sbjct: 123 SLSFITAQFSNIFNMLMSGINNFAINVFTAILLLFFLLSGGMKMELYIAKLLPFS-EENK 181

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP- 259
             + + +  ++RS  +G+ ++A+ +G+V    Y L GV + +  GV+T   ++IP     
Sbjct: 182 HAVIKRLHVIVRSNAIGIPLLAVIQGVVATIGYMLCGVNNALLFGVLTGFASIIPIVGTM 241

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           I +  + I     G++ +   L  +    +   D  +R  L         L T FG++ G
Sbjct: 242 IVWIPLVIGQYFDGSLLSTLGLAFYCIAIISQCDNVIRMILQKRMANTHPLITIFGVIAG 301

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +   G +G+  GP+++++  +         
Sbjct: 302 LPIFGFMGVIFGPLIVSMFLLFVDMFAKQY 331


>gi|255100081|ref|ZP_05329058.1| hypothetical protein CdifQCD-6_04695 [Clostridium difficile
           QCD-63q42]
          Length = 350

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 101/319 (31%), Gaps = 2/319 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + + I  ++ + +Y    + AP     II     PI     +K   +     ++ +   +
Sbjct: 17  IFFCIYTLLFIFIYKAFPYIAPFFLGAIIALMINPISQKLENKFHINKGISTLVLSFLAV 76

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +       +    M E+   ++ +    +       +   +       + + +  +   
Sbjct: 77  AIVSTVTTIIVINSMKELMGFLNNISANPEDISNTIMYF--LNKINDFMKSFQEIANFDV 134

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   +         +               + II + IA +F  +D   I     ++
Sbjct: 135 EQLVNKFSGEVMQITKNLLTSILGLATSIPYIIIFIITLFIATYFIAKDLDKIENSFYNM 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    K + +     +       TI+       +  ++ L G+   + +G + A+M
Sbjct: 195 FTVDVRKKVKNVKKEAGLSLVGYIRAYTILMAITFFAIWGSFALFGLKYGLIVGFVGALM 254

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP    I+     I        +            L ++ + L P LV   + L  L 
Sbjct: 255 DLIPFLGIITIYLPVIVYYFLIKNYFIAISMTVIFFVLSLIREILEPKLVSVNVGLNPLA 314

Query: 312 TFFGLVGGVRTMGLLGLFI 330
           T   +  G++  G++G+  
Sbjct: 315 TLAAIFIGIQVKGIIGVIF 333


>gi|218529762|ref|YP_002420578.1| hypothetical protein Mchl_1787 [Methylobacterium chloromethanicum
           CM4]
 gi|218522065|gb|ACK82650.1| protein of unknown function UPF0118 [Methylobacterium
           chloromethanicum CM4]
          Length = 392

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 94/347 (27%), Gaps = 26/347 (7%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + S ++       +             +   IA++ +  L +    F       + ++L 
Sbjct: 45  IFSGILFAVFLDGVTRGLGYVLPIGRGWRLAIASLVLAALALGLTAFGGATVASQARDLG 104

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT---------- 143
           + V   ++      +           +          +      ET              
Sbjct: 105 TTVRQQSETVRDWLKERGVEIDLSQGAPAEAGQSGEGKGQDTGKETGKDAGKDKNGKEGG 164

Query: 144 ----------------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +    +   A+   +   +   +++ ++        D  S    
Sbjct: 165 LAGLASGALKSPGSLLSDAGSVLGPAATVVIALFNALGNVLVIVFLGVAIAADPGSYRDG 224

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L          ++     + +R    G  +      ++  +     G+   + LG+ 
Sbjct: 225 ALRLVPPRHREKGARVLDGSGETLRHWLFGQLVTMAAIFVLTWAGLSFLGIGGALILGLQ 284

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++A +P   P+    V +   +   +                    L PF+    + L
Sbjct: 285 AGLLAFVPTIGPLIAGLVIVLSSLASGLNGLLGALGVYLAVQAAESYGLTPFIQRRALDL 344

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P    F G +      GL G+ +   L+A+I V+ +E  +      E
Sbjct: 345 PAATIFAGQLLLGVLFGLWGVALALPLVAVIKVLLEELYIEDGAEAE 391


>gi|157145858|ref|YP_001453177.1| putative transport protein [Citrobacter koseri ATCC BAA-895]
 gi|157083063|gb|ABV12741.1| hypothetical protein CKO_01609 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 107/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    + +          I   
Sbjct: 34  KLVIMLGMLVIILTGIRFSADIIVPFILALFIAVVLSPLVQRMV-RLRIPRVLAVSILIG 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +  WL  +  G+   EL      
Sbjct: 93  IIVMGMVLLLAYLGTSLNELARTLPQYRSSLVVPLKNIEPWLQRLGIGVSVDELVKYIDP 152

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             +      +       +   SI  +++ + F   +   +  +L
Sbjct: 153 ------------------NAAMTLVTNLLAQLSNAMSSIFLLLLTVVFMLLEVPQLPGKL 194

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P       +     +    +  T I+I  G+V+     L  V      G++ 
Sbjct: 195 QQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGVVVWGMLALLEVRFAFVWGLLA 252

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+   +++A  +     I   +    L P ++G  + L
Sbjct: 253 FALNYIPNIGSVLAAIPPIAQVLVFSGLYDALVVLTGYLIINLVFGNILEPRIMGRGLGL 312

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 313 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 349


>gi|320531096|ref|ZP_08032125.1| hypothetical protein HMPREF9555_02234 [Selenomonas artemidis F0399]
 gi|320136678|gb|EFW28631.1| hypothetical protein HMPREF9555_02234 [Selenomonas artemidis F0399]
          Length = 384

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/348 (10%), Positives = 102/348 (29%), Gaps = 9/348 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-------TFLAVIATVSVM 71
              + L  +     P+   +   F       +                +   V++    +
Sbjct: 36  ATALVLRSILQVLYPIFVGVAFAFVLSIPQEALEKILGRHRQMRSHARSLSIVLSLTGGI 95

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +         +  ++   + +  A          +  +    +  EL +   +   
Sbjct: 96  IMLFLFANAFIPQFIQTLRGFGTALPEALHEVAAALDGVPTLQ--KYVVELESVDWNQMM 153

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                     +   +       + F  + ++  + II  I  L         + Q L + 
Sbjct: 154 QRVQEYLASGQAEAVYSAVHTTAEFVTMMVETFVGIILGIYFLGTKEMLTRQMRQMLYAF 213

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +   I  +  +   +   G  + +    + L +   L G+     +  I    
Sbjct: 214 CTRKNADHIAHIGGVFRQKFYAFVCGQMLDSFIFMMGLFTGMILFGISHAAMVSAIVVFT 273

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP    +   A+    +   +   A    +   +   I    + P ++G  + LP + 
Sbjct: 274 GLIPMVGGVIGGAIGAVFIFVESPTQALIFIILLIVLHQIDSNFIYPRIMGRSLGLPEVW 333

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +F  ++ G    G+LG+ +G  + +    +  E      + KE +  +
Sbjct: 334 SFIAIIVGGGLFGVLGMLLGVPVFSAFYTLLGEYTRNRLKEKEHLPED 381


>gi|167765242|ref|ZP_02437355.1| hypothetical protein BACSTE_03630 [Bacteroides stercoris ATCC
           43183]
 gi|167696870|gb|EDS13449.1| hypothetical protein BACSTE_03630 [Bacteroides stercoris ATCC
           43183]
          Length = 336

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/307 (17%), Positives = 125/307 (40%), Gaps = 20/307 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +  F   +L AL I             K++   +  A + T   +  F+VPL  + +  +
Sbjct: 27  ITPFLGGLLGALTIYILVRRQMIYLSEKRKIKRSIAATVITAEAILCFLVPLALVVWLAV 86

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + ++ +                  +  P  + A       +   ++   +      +  I
Sbjct: 87  VNLQNI------------------NLDPQAVIAPFEEAASIIKARTGYNVLSGNSLSFFI 128

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +PR           + +++  ++  L+F    G  + Q ++ L         ++I   
Sbjct: 129 SSLPRIGQTLMGGISSFIVNMFVLVFVLYFMLIGGKKMEQYVNELLP-FNETNTQEIVHE 187

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAV 265
           +  ++RS  +G+ ++A+ +G V    YW+   P+ +  G +T   ++IP     + +  +
Sbjct: 188 INMIVRSNAIGIPLLAVIQGGVAMLGYWIFDAPNILFSGFLTGFASIIPMAGTALVWIPI 247

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++Y+ + GN F A  L ++G++ +  +D  +R  +      +  L T FG+V G+   G 
Sbjct: 248 AVYMALIGNWFQAIGLVIFGSLVISQLDNLIRFVIQKKMADIHPLITVFGVVIGLSLFGF 307

Query: 326 LGLFIGP 332
           +G+  GP
Sbjct: 308 MGVIFGP 314


>gi|254423473|ref|ZP_05037191.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196190962|gb|EDX85926.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 374

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 103/335 (30%), Gaps = 22/335 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++    + +I+  L  L G   P+L +L +   + P+ S    K          ++ + +
Sbjct: 39  LISLASIVLIVSGLRALSGLLTPILLSLFLVLVTAPLLSWLRKKGLPR-----WLSYLVI 93

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +    +  LF  ++    + +L+  +             L +  G         + L+  
Sbjct: 94  LLGVGIVGLFFTFFLTTSLNQLLDVLPTYINQIESQVEELWEWLGTRGIDSEDIQELTWF 153

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q               + I R +       L    ++   +I   +      S S +L  
Sbjct: 154 Q--------------PERILRVSVTVTTTVLGLFSNVGLTLIIFIYMLATAPSFSARLRK 199

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +  +   +   +  L    +     LV      + G+   V  GV++ +
Sbjct: 200 GLRKN--PSALQRLQAFAQSTSAYLLIKGWLGALTALVQIFLMLILGLDFAVLWGVLSFL 257

Query: 251 MAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P           + L +       A    +         D  + P  +   + L  
Sbjct: 258 LNFVPNIGFYIALIPPLLLSLIELGWLKAVLFAIAYVAINNFFDLVIAPKYLSEGLDLSA 317

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L TF  ++     +G +G F+   L  ++  +  E
Sbjct: 318 LVTFLAVIIWTWILGPIGAFLALPLTVMVKKLLLE 352


>gi|126698629|ref|YP_001087526.1| hypothetical protein CD1045 [Clostridium difficile 630]
 gi|255091987|ref|ZP_05321465.1| hypothetical protein CdifC_04920 [Clostridium difficile CIP 107932]
 gi|255305971|ref|ZP_05350143.1| hypothetical protein CdifA_05210 [Clostridium difficile ATCC 43255]
 gi|255313721|ref|ZP_05355304.1| hypothetical protein CdifQCD-7_05208 [Clostridium difficile
           QCD-76w55]
 gi|255516403|ref|ZP_05384079.1| hypothetical protein CdifQCD-_04772 [Clostridium difficile
           QCD-97b34]
 gi|260682669|ref|YP_003213954.1| hypothetical protein CD196_0922 [Clostridium difficile CD196]
 gi|115250066|emb|CAJ67886.1| putative sporulation integral membrane protein [Clostridium
           difficile]
 gi|260208832|emb|CBA61754.1| putative membrane protein [Clostridium difficile CD196]
          Length = 350

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 101/319 (31%), Gaps = 2/319 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + + I  ++ + +Y    + AP     II     PI     +K   +     ++ +   +
Sbjct: 17  IFFCIYTLLFIFIYKAFPYIAPFFLGAIIALMINPISQKLENKFRINKGISTLVLSFLAV 76

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +       +    M E+   ++ +    +       +   +       + + +  +   
Sbjct: 77  AIVSTVTTIIVINSMKELMGFLNNISANPEDISNTIMYF--LNKINDFMKSFQEIANFDV 134

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +   +         +               + II + IA +F  +D   I     ++
Sbjct: 135 EQLVNKFSGEVMQITKNLLTSILGLATSIPYIIIFIITLFIATYFIAKDLDKIENSFYNM 194

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    K + +     +       TI+       +  ++ L G+   + +G + A+M
Sbjct: 195 FTVDVRKKVKNVKKEAGLSLVGYIRAYTILMAITFFAIWGSFALFGLKYGLIVGFVGALM 254

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP    I+     I        +            L ++ + L P LV   + L  L 
Sbjct: 255 DLIPFLGIITIYLPVIVYYFLIKNYFIAISMTVIFFVLSLIREILEPKLVSVNVGLNPLA 314

Query: 312 TFFGLVGGVRTMGLLGLFI 330
           T   +  G++  G++G+  
Sbjct: 315 TLAAIFIGIQVKGIIGVIF 333


>gi|316935743|ref|YP_004110725.1| hypothetical protein Rpdx1_4441 [Rhodopseudomonas palustris DX-1]
 gi|315603457|gb|ADU45992.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           DX-1]
          Length = 367

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 95/319 (29%), Gaps = 16/319 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y  K FF P+++A ++G    P+ S F           AV+  ++ +   +  +  +   
Sbjct: 47  YVGKPFFLPIVTAFVVGTMLSPMASLFERW-HIPRGVSAVLIVLAGLAGVVFMIGLISVP 105

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     L     L       + + ++       A             +  L        
Sbjct: 106 LIEWTNRLPELGSLMRDKLHVLDKPVAMWRQLQTALGGAEALAPATVQMPKLDWMQPTVE 165

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +         F +  + +  S                     +             +I 
Sbjct: 166 FLSPTLTELVLFLVTLVLFVASWRG-------------LRRALVMLFAGRDARLRTLRIL 212

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             + + + +  L +T+I +  G   G     AG+P+   LG + A +  IP   P     
Sbjct: 213 NEIEESLGAYLLTVTVINLCYGAATGLLLAAAGMPNPAGLGALAATLNFIPIIGPFVMFV 272

Query: 265 VSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           +   + I         L          FI    + P ++G  + L  L  F  +      
Sbjct: 273 ILCVVGIVSMPTLGAGLLAAFGFACLTFIEGHFITPTIIGRRLALNALAVFIAIAFWTWL 332

Query: 323 MGLLGLFIGPVLMALIAVI 341
            G +G F+   L+ +  V+
Sbjct: 333 WGPMGAFLASPLLIVGLVL 351


>gi|218695163|ref|YP_002402830.1| putative transport protein [Escherichia coli 55989]
 gi|218351895|emb|CAU97620.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli 55989]
          Length = 344

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+           +        +I + +
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMACPVEGMAAIQRAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV  +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|238916040|ref|YP_002929557.1| hypothetical protein EUBELI_00073 [Eubacterium eligens ATCC 27750]
 gi|238871400|gb|ACR71110.1| Hypothetical protein EUBELI_00073 [Eubacterium eligens ATCC 27750]
          Length = 356

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 102/330 (30%), Gaps = 3/330 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +I+ ++      L  +  P + A                   E  T  A I    V  
Sbjct: 18  SAVIIAVVFFIFKVLFYYVWPFMLAFCFAVLLQKPIVGLAKLLREKKTLAASIVVTMVTL 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  LL++ Y    E+K+ ++             + +     G    +    +    + 
Sbjct: 78  IILSVLLYVGYMAFRELKDFIANFDENINSLDGQFKLVCCRIDGWIKLKEGCSYAFFEKC 137

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I+ +   +      + + +       +     ++   I   +            ++  
Sbjct: 138 KGIIIDGDGQQMFFTIMRKHSVPVITWCVMAVAGLVVCFIGTIYAAAGIEKYRSWREN-- 195

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             +F      +   +  +I   F    II     +V  +A+ + G P  + LGV+T I+ 
Sbjct: 196 -TIFKGEVGAVHVGLRNLINVYFRVQLIIMSINIVVCSTAFLMIGNPYAILLGVLTGIID 254

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            +P     +         +         + +   I  + V + +    +G  + +     
Sbjct: 255 ALPIFGTGTVLIPWAVGSLLFGHVKNAVILVVLYIVTYFVREIMESKCMGDRMGIAPFTM 314

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              +  G+   G++G  +GP+   +I  + 
Sbjct: 315 LAVIYIGILVYGVVGFILGPISYCIIKALV 344


>gi|227486232|ref|ZP_03916548.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235863|gb|EEI85878.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 408

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 41/387 (10%), Positives = 117/387 (30%), Gaps = 28/387 (7%)

Query: 1   MRETML--NPQGIMRWMIMFIILVSLYFL----------KGFFAPVLSALIIGFTSWPIY 48
           M+E       +  +  +++  I    ++L             F P++  L+I F      
Sbjct: 1   MKEIFEEKTRKYFIIGILLIGIFYGFFYLDRIGEILDTTYKVFRPIVYGLVIAFIINLPM 60

Query: 49  SSFI-----------SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           + F              ++   +F  +++ +    +  + L  L       +  +   + 
Sbjct: 61  NFFHDEIFTKIFKDDKHEKLRRSFSLILSWIIFFAMVTIVLTVLIPELSRAVGVISENIP 120

Query: 98  LANQHGIPVPRWLSDI-----PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
                 I        +            E+  + +S   +  +       ++ I+     
Sbjct: 121 AFMNSLIDFINGSKLLTNVSKFIVTRLEEINIERISDSFTKILQDFFRPDSDFINKTGSI 180

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            +      L   +  +F +       +     ++ + +            ++++      
Sbjct: 181 INSVSQGILSLSIGFVFSLYVSMNKTKLKNGAARLVFANLSEKTARQIVYVAKLSYDSFA 240

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
                  +  +  G+      W+  +PS   + ++     MIP       T++ I L+  
Sbjct: 241 RFLETRILSCLALGVACFIGMWVLRLPSAGMISILMGAFDMIPYIGAFLATSIGIILIFT 300

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +   A    ++  I   +  +   P ++G    LP +  F  ++ G    G+ G+    
Sbjct: 301 YSPGKALVFLIFILILQNVQQQLFYPLVIGKHQGLPPIWIFVSVIIGGGLFGIFGMIAFI 360

Query: 333 VLMALIAVIWKESIMAIKENKEKISSN 359
            L  ++  + +++     + K      
Sbjct: 361 PLATVLYTLLEDNTTKKLKEKSISDEE 387


>gi|168789435|ref|ZP_02814442.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
 gi|261227955|ref|ZP_05942236.1| transporter of quorum signal AI-2 [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258311|ref|ZP_05950844.1| transporter of quorum signal AI-2 [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189370968|gb|EDU89384.1| putative permease, PerM family [Escherichia coli O157:H7 str.
           EC869]
          Length = 344

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSTLNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+           +        +I + +
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFKQMMARPVEGMAAIQRAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV  +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLRIIVKIALEQ 327


>gi|323968669|gb|EGB64074.1| TqsA transporter [Escherichia coli M863]
 gi|327252716|gb|EGE64370.1| hypothetical protein ECSTEC7V_1959 [Escherichia coli STEC_7v]
          Length = 344

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEILVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|77463912|ref|YP_353416.1| hypothetical protein RSP_0340 [Rhodobacter sphaeroides 2.4.1]
 gi|77388330|gb|ABA79515.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 340

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 77/299 (25%), Gaps = 20/299 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                + + ++ G                       +  V V+       L        +
Sbjct: 24  DVLLVIFAGVLFGVFLSAGGGLVQRVTGLQRGAGIALFIVLVLLALTGAFLAFAPAMFEQ 83

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L  ++  A +         S  P                     L      +  +  
Sbjct: 84  ADALARQLPPAFEDLRDRISAYSWGP--------------------TLLSRLAPSRLLSS 123

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
              FAS           +++ ++    +   D     + L +L          ++  I  
Sbjct: 124 DGGFASTAVSATFGALGNVVIILFIGLYTAVDPGLYRRGLRALLAPPLRPRGDEVLAIAD 183

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             +R    G  I     G++     WL G+P    LG+I A++  IP   P+     ++ 
Sbjct: 184 GTLRGWLGGQIISMTVVGVLTWLGLWLIGIPLAFILGLIAALLTFIPNIGPVLSAVPALL 243

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L +         +              + P +    + LP        +      GL+G
Sbjct: 244 LALPEGAEQVGLVLAVFLTVQTFESYLVTPLIQKERVALPPALIISAQLLMGVLFGLMG 302


>gi|87312173|ref|ZP_01094276.1| probable permease [Blastopirellula marina DSM 3645]
 gi|87285098|gb|EAQ77029.1| probable permease [Blastopirellula marina DSM 3645]
          Length = 523

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/261 (19%), Positives = 104/261 (39%), Gaps = 3/261 (1%)

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            +    + R  +    G     +   + +         ++         +          
Sbjct: 255 MEDVQTLFRRQTVEYLGGQPLAMARLYANPGDREASRLQSLAIDRLETIVLPVTGAGASF 314

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
                L +  +I++L++F+ DG ++      L   L   Y +++     +V R+  L   
Sbjct: 315 VGALILGLGILILSLYYFFFDGPALISAAMRLSP-LDDEYERQLIEEFSQVSRAVVLATL 373

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA- 278
           + A+ +GL+ G  +W  G+ S   L  +T  +AM+P     S        LI      A 
Sbjct: 374 LSALAQGLLAGIGFWFCGLESVFLLMFLTMTLAMVPFLGAASVWVPVSVWLIVAEERLAA 433

Query: 279 -TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              L ++G   + +VD  ++PF++ G  KL  L     ++GGV  +G +G+ +GP+L+A 
Sbjct: 434 GVGLAIYGVAVISLVDNIIKPFVLHGQSKLHPLLALLSVLGGVSALGPIGILVGPMLVAF 493

Query: 338 IAVIWKESIMAIKENKEKISS 358
           + V+       + +  E   +
Sbjct: 494 MQVLLNMLRGELVKMGEAEDA 514



 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 5  MLNPQGIMRWMIMFIILVSLYF----LKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
          M  P+    W ++ I+ V+ +F    +  F  P+  A I+     P++   + K +  + 
Sbjct: 1  MSLPKMFSFWALLAIVGVAAFFTYQVMSIFLVPMFLAAILVVIFRPLHDWIVEKFKGRNA 60

Query: 61 FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
            A   T+ ++ + + PL+ +F   + E  +LV 
Sbjct: 61 LAAGATTLIILLIVLAPLIGIFSMAIKETIDLVR 94


>gi|218129309|ref|ZP_03458113.1| hypothetical protein BACEGG_00886 [Bacteroides eggerthii DSM 20697]
 gi|317475278|ref|ZP_07934544.1| hypothetical protein HMPREF1016_01524 [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988486|gb|EEC54807.1| hypothetical protein BACEGG_00886 [Bacteroides eggerthii DSM 20697]
 gi|316908532|gb|EFV30220.1| hypothetical protein HMPREF1016_01524 [Bacteroides eggerthii
           1_2_48FAA]
          Length = 336

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 134/332 (40%), Gaps = 20/332 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              +  F + +L AL I             K++   +  A I T   +  F++PL  + +
Sbjct: 24  FRQITPFLSGLLGALTIYILVRRQMIYLSEKRKMKRSIAATIITAEAILCFLIPLALVVW 83

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             ++ ++ +                  +  P  + A    T  +   ++   +      +
Sbjct: 84  LAIINLQNI------------------NLDPQAIIAPFEQTAAIIKAKTGYNILGGDSLS 125

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  +PR           + +++  ++  L+F    G  + Q ++ +         + +
Sbjct: 126 FVLSSLPRIGQTLMGGISSFAVNMFVLVFVLYFMLIGGKKMEQYVNGILP-FNETNTQNV 184

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISF 262
              +  ++RS  +G+ ++AI +G V    YW+ G P+ +  G +T   +++P     + +
Sbjct: 185 VHEINMIVRSNAIGIPLLAIIQGGVAMIGYWIFGAPNILFSGFLTGFASVVPMVGTALIW 244

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             ++IY+ + GN   A  L  +GA+ +  +D  +R  +      +  L T FG+V G+  
Sbjct: 245 VPIAIYMALIGNWLQAIGLAAFGALVISQLDNLIRFIIQKKMADIHPLITIFGVVIGLSL 304

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G +G+  GP+L++L  +          + ++
Sbjct: 305 FGFMGVIFGPLLLSLFFLFVDMFKKGYLDGEK 336


>gi|94990464|ref|YP_598564.1| hypothetical protein MGAS10270_Spy0955 [Streptococcus pyogenes
           MGAS10270]
 gi|94543972|gb|ABF34020.1| hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10270]
          Length = 382

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 111/338 (32%), Gaps = 13/338 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P        +    + S++               +       ++A ++   L    +  
Sbjct: 47  LPFFYGAAGAYIVNIVMSTYEKVYVYIFKDWSHVLKVKRGICLLLAYLTFFILITWIISI 106

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L     +  Q  +        +   +       K      +        
Sbjct: 107 VIPDLITSISTLTKFDTITIQEVVNNLEHNKLLARTIQYIGGDGKLTETIANYSQQLLKQ 166

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T   + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 167 FLTVLTN-ILTSVTVIASAIINLFISFVFSLYVLASKEDLCRQGNTLVDTYTG-KYAKRI 224

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++ +     F+  T+ A+  G +  S  ++  +P    +GV+ A  A+IP     
Sbjct: 225 HYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLPFAGTIGVLVAFTALIPVIGAS 284

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 285 IGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPKVVGGSIGLPAMWVLMAITIGA 344

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++G+ I   L A +  + K++I   +  ++K  S
Sbjct: 345 SLKGIVGMIIAVPLAATLYQVIKDNIQKRQAIQKKQVS 382


>gi|331007495|ref|ZP_08330665.1| hypothetical protein IMCC1989_1586 [gamma proteobacterium IMCC1989]
 gi|330418700|gb|EGG93196.1| hypothetical protein IMCC1989_1586 [gamma proteobacterium IMCC1989]
          Length = 345

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 108/339 (31%), Gaps = 22/339 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + ++      I++  +   +    P   +L I     P+       +         I
Sbjct: 7   PISRFLLVTAAFIIVVAGMKAAESLLVPFFLSLFIAIICTPLLGFMKRYRIP-----TGI 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A + ++ + +V  +F+       +    + +         +   L     G   +     
Sbjct: 62  AILLIVVMMVVVGIFIGAIVGSSVNSFTANIPEYQARLTVLSSGLQSWLSGWGIA----- 116

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                   K+  E    +  +       + FG I  D  L ++ +I  L         ++
Sbjct: 117 -----IDPKLWREMVNPSAALTIAGNTLTSFGNIMTDGFLILLTVIFILTEEINFSDKLT 171

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q               +        +       T++++  G+++  A  + GV   +  G
Sbjct: 172 QASTK------SEKTLEALSRFTDSLNKYMAIKTLVSMATGVLVMIALAIIGVDYPILWG 225

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++  ++  IP    I      + L +    +  A  + ++  +   IV   L P  +G  
Sbjct: 226 LLAFLLNFIPTFGSILAAVPPVLLAVVQLGVGEAFFIAIFYVLVNVIVGSVLEPRFMGKG 285

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L  L  F  LV     +G +G+ +   L  ++ +  +
Sbjct: 286 LDLSSLVVFLSLVFWGWILGPVGMLLSVPLTIMVKIALE 324


>gi|87121490|ref|ZP_01077379.1| putative membrane protein [Marinomonas sp. MED121]
 gi|86163333|gb|EAQ64609.1| putative membrane protein [Marinomonas sp. MED121]
          Length = 358

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 112/345 (32%), Gaps = 22/345 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E+      ++ +  + II+  L        P + ++ I     P+ +     K     
Sbjct: 1   MAESHRATYFLVGFAALIIIIAGLKAASAIVVPFMLSMFIAIIFAPLLAWLARHKVP--- 57

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               IA + V+ L I  +  L  +    + +  + +             ++D+   M  S
Sbjct: 58  --IGIAVMLVVLLMIFSVGSLVIFVGSSLDDFYAALPGYKARLSNELVGITDLLHHMGLS 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               K  S+             +  +  +    S  G +  +  + ++ +I  LF     
Sbjct: 116 VSVEKIRSYFD----------PSILMQVVTNALSSLGGVLTNVFVVLMTVIFILFEAADF 165

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +S  +D     L         +     +       T+++I  G V+G   W+ GV  
Sbjct: 166 PTKLSAAMDDATGSLKR------FKDFSNAVNQYLAIKTLVSILTGFVIGIWLWIIGVDF 219

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV   ++  +P    I       +   ++     +    L       IV   + P 
Sbjct: 220 PLLWGVSAFLLNFVPNIGSIIAAIPAVMLAFVQLGGVASGLAALGYLAINLIVGNIIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            +G  + L  L  F  L+      G +G+ +   L  ++ +  + 
Sbjct: 280 YMGKGLGLSTLVVFLSLILWGWVFGAVGMLLSIPLTIIVKLALEA 324


>gi|51244045|ref|YP_063929.1| hypothetical protein DP0193 [Desulfotalea psychrophila LSv54]
 gi|50875082|emb|CAG34922.1| hypothetical membrane protein [Desulfotalea psychrophila LSv54]
          Length = 365

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 55/341 (16%), Positives = 125/341 (36%), Gaps = 4/341 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +           L  F++ ++ + ++     P+Y     +     +  + +  + ++
Sbjct: 23  FLLVFAIAFFFLGRILWPFWSILVLSFLLVNIFQPVYLFLSKQL--PRSVASGLTCLMII 80

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L   PLLF       E     + V  +                    + L    +    
Sbjct: 81  ALVFFPLLFFTGALTGEALSFYNWVRDSQVWMRFQDFIQQSQFITRMQAPLKDFGIDFQP 140

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    S  +    G  F+   AS +    L        MI+ +FF + D   + + L  L
Sbjct: 141 AQITASLAYFAKAGGLFLYDQASSWAANILQSVALFFIMILVIFFLFMDLLRLKEFLFKL 200

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
              L     + + +   ++  +   G  I  I +G++ G  + +  +PS +  G I +++
Sbjct: 201 SP-LPEDENRLLVKKFEEIANAILKGSGICGIIQGIIGGVLFSIMHLPSPILWGCIMSVL 259

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A +P     +     ++ L I G    A+ L +   +    ++  ++P LVG  +++  L
Sbjct: 260 AFLPIFGIGLVMLPAALALAIDGQTATASSLVISYLVLSLGMEYLIKPKLVGSQVEMHTL 319

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             F  ++GG+   G+LG+  GP+++     +    +    +
Sbjct: 320 LVFLSIIGGISVYGILGIIYGPLIITAFLTLSNIYLRRYDQ 360


>gi|332044623|gb|EGI80817.1| protein of unknown function UPF0118 [Lacinutrix algicola 5H-3-7-4]
          Length = 343

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 104/332 (31%), Gaps = 21/332 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++   +   LYF K    P+L A II                  S     ++ + ++ +
Sbjct: 17  LLLTGSVFTLLYFGKNLIMPLLVAAIIAILLDIPVQKL-KNLGLPSWLSITLSVLLMVLI 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F +    L        ++       A +      +W ++     +   +           
Sbjct: 76  FSLLFWLLSSQINNMAQDWSVIKEKATEKLNAFSQWANNSLNWDYKDYIENN-------- 127

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +      AS F    +      + + + +  F             L  
Sbjct: 128 ---------KKLVQKAESLASSFLSSLMSLLSQSLIIFVYIILFLMQKLQFINFFKKLFT 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +        + +   K+ R+ F+G   I +   ++    + +  VP  + L +  A+ ++
Sbjct: 179 NQTA--IHSLLKNSAKITRNYFVGKGKIMLFLFVIYYIGFLIGSVPYALFLALFAALFSI 236

Query: 254 IPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP     I      I   +      A  +    +    + +  L P+++G  I L    T
Sbjct: 237 IPYVGNVIGGGVAVILSYLYAGSTPALIVISVVSATQLVENYVLTPWIIGDEINLNPFIT 296

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            FG++      G++G  I   ++ ++ VI+  
Sbjct: 297 IFGIILFSALWGVVGAIISLPIIGVLKVIFDH 328


>gi|225851276|ref|YP_002731510.1| membrane protein [Persephonella marina EX-H1]
 gi|225646547|gb|ACO04733.1| membrane protein [Persephonella marina EX-H1]
          Length = 355

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 132/313 (42%), Gaps = 5/313 (1%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
            +P+      K + S+   ++I+T  V    IVP + L  +   ++  L   ++ A   G
Sbjct: 45  FYPVKKKLDHKLK-STLLSSLISTAIVFMFIIVPSIVLIAFFTNQVISLYPVIIQAVSEG 103

Query: 104 IPVPRWLSDIPGGMWASELWTKHLS--HPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
             +  +++ IP      +++ + L   H +         + +N  +F+        +   
Sbjct: 104 HTIEYYINQIPILSSIHKIFLQSLQTLHIEIDLNTVLRNILSNIANFLIEQGKSLFINIT 163

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              + I  M++ +FF ++DG S+  ++  L   L       +       I+   LG  + 
Sbjct: 164 FLIIGIGIMLVTIFFLFKDGESLYDRVLKLIP-LPEKDKNFLLSKTYTAIQGVVLGSVLT 222

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATC 280
           AI +G++    Y+ AG+   +    IT I A +P G   + +  ++IYL I         
Sbjct: 223 AIAQGILSFIGYFTAGLEFSLFWAFITFIAAFLPIGGASLVWIPIAIYLFISKGFLTGFL 282

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             LWG   + +VD  ++P ++G    +  +  FF ++GG+   G +G+F+ P+++ LI  
Sbjct: 283 FALWGTFVISLVDNIIKPVVIGDKTNIHPVILFFAILGGLNLFGFIGIFLAPIVIVLIDN 342

Query: 341 IWKESIMAIKENK 353
           +            
Sbjct: 343 MLYLYAERFSSQD 355


>gi|86749792|ref|YP_486288.1| hypothetical protein RPB_2675 [Rhodopseudomonas palustris HaA2]
 gi|86572820|gb|ABD07377.1| Protein of unknown function UPF0118 [Rhodopseudomonas palustris
           HaA2]
          Length = 391

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 44/352 (12%), Positives = 92/352 (26%), Gaps = 11/352 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L + +   G    + + ++ G     +                 +    + 
Sbjct: 24  ISTVAFGALLYTSWHFAGTLFLIFAGILFGVFLNALTDLAGKVVGGPHGLRLALVCCVLT 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +FI   +        +   L   +     +              M  + +     S   
Sbjct: 84  VMFIGIAVLGGNTIAQQATALSGTIKAQIVNAKTFLERQGVDTSFMELNVVANAANSANA 143

Query: 132 SLKILSETFLKT-----------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 +  L             +G   I     +  +  +    +   ++     F   
Sbjct: 144 GSTAAEQQPLPQPRNLPSAGDLASGGGAIVSQTLKLILGTIGAVGNFFIVMFLGLAFAAQ 203

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                + L+ +    + A    I      +++   L   I       V  +   L G+P 
Sbjct: 204 PDVYRRGLERVAPLRYRAQASAIVGDTGDMLKRWLLAQLITMSAVFAVTATGLSLIGIPG 263

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              LG+   ++A IP    I    V +   I    F     F+       +    L P +
Sbjct: 264 AFILGIQAGLLAFIPTVGAILGGLVIVLAAIGSGWFAVVSAFVLFLGVHALESYILTPLI 323

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               I +P    F   +      GL GL +   LMA+  V+           
Sbjct: 324 QRQAIDIPPATLFAMQILLGIVFGLWGLAMALPLMAIGRVVINHLRAEPTPE 375


>gi|313205129|ref|YP_004043786.1| hypothetical protein Palpr_2671 [Paludibacter propionicigenes WB4]
 gi|312444445|gb|ADQ80801.1| protein of unknown function UPF0118 [Paludibacter propionicigenes
           WB4]
          Length = 361

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 52/335 (15%), Positives = 125/335 (37%), Gaps = 16/335 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++ +  +L  LY  +G   P++ A II     P+    +S +        ++A +  +
Sbjct: 16  IFFVGLSALLAILYIAQGIIVPLVFAFIIAILLHPVVKFLVSIRINR-----IMAIIITL 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L  + ++        E         L  +    +              +  +++ +   
Sbjct: 71  LLMALIIVAFIALIYKEAVSFSDSWPLLVKKFTAILD---------DTIQYTSQYFNIRP 121

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L     T  +   +        +  +       +++ + + +F        + + +  L
Sbjct: 122 ALIHTWITKTQHELVTINSTLIGQTLVTVGSSVATMLLVPVYIFVILYYQPLLIEFVHRL 181

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +       + I+     VI+   LG+ I AI  G++      L G+   + LGV+ A++
Sbjct: 182 FDEAHQNQVRSITTKTKSVIQHYLLGLIIEAIIVGILNTVGLLLLGIQYAILLGVLGALL 241

Query: 252 AMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            +IP    I    + + +    K + + A  +F        I +  + P +V   +K+  
Sbjct: 242 NLIPYIGGIIAVGLFMMVALVTKESSWFALYVFGVHTFIQIIDNDYIVPKIVASKVKINA 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L +   ++ G    G+ G+F+   L+A++ VI+  
Sbjct: 302 LFSIVVVLVGNALWGVPGMFLSLPLLAIVKVIFDH 336


>gi|300215084|gb|ADJ79500.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
           5713]
          Length = 349

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 118/355 (33%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + + R+ ++  ++  LY  +   + +L   I  F    +  +   K +  S  +
Sbjct: 5   QRFLGNERLRRFTVLLFLVGVLYLARSMMSLILLTFIFSFLVISLNDAIRKKIDIPSKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++    + +       + + + LV+ +V    H       + ++     +   
Sbjct: 65  VIIVYLLMIGGIYLAITIYLPKLVTQTENLVNYIVKFYNHPPKGTNDVINMVTQYISQSD 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K +    S+ +     + T G+ FI      F                   FF  D  
Sbjct: 125 IMKQMRGGMSIIVKYLANIGTMGMTFIMALLLSF-------------------FFTIDKD 165

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG---MTIIAIGEGLVLGSAYWLAGVP 239
            + +   S  +  +  ++  +       + S  +      IIA+    +  +      +P
Sbjct: 166 DLFKFSKSFLKGPYSWFFNDVYYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMP 225

Query: 240 SHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              +L ++   M+MIP    I     + +     G +     + +   +   +    L P
Sbjct: 226 QLFSLALLIFFMSMIPVAGVIISAIPMMLIGYTVGGVKYIIYIIIMLCVVHALEAYVLNP 285

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+    +LP   TF  L       G+ GL +G  +   +  I       I+  +
Sbjct: 286 KLMSSRTELPIFYTFVVLYVSEHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 340


>gi|28974220|gb|AAO64221.1| putative acid membrane antigen A [Campylobacter fetus]
          Length = 367

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 123/349 (35%), Gaps = 21/349 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +    + I+F++   L+  + +   +   +++   +  I ++F+      +   A I
Sbjct: 17  PTNRLFFGFFILFLLCWVLFLFQSYLLTISIGVLLAVATSNIQNAFLRFTNGKAALSAAI 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ +  +F +PL++     +         +   +     +  +   +P  +   E   K
Sbjct: 77  TTLFLCTVFFLPLIYAVIEIVKNAANF--DIKSISHTIDYIKNFDLKLPQALSFLEPKIK 134

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L     L            I  +  +A        ++ + I F+++ LFF +       
Sbjct: 135 ELIAGIDLP---------TLIRKVLSYAKGSLEKSANFLIDISFIMLFLFFSHFYANFFK 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +   +     + I   V   +   F       I +G +        G    +   
Sbjct: 186 SYIKKVSP-IAKYELEAIFSEVANTMSVVFYSTIANMILQGFLFAIIASFYGFDGLLFGV 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP------ 298
           +      +   G  + +  +S++    G+   A  + ++  + +  + D  ++P      
Sbjct: 245 LFAFSSLIPVVGGALVYIPLSVFEFSLGDTKAAIIILVYSIVVISTLADNFVKPLVIKFI 304

Query: 299 --FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              L+  P K+  L  FF ++ G+ + G  G+ +GP ++ L++   +  
Sbjct: 305 NEKLLKTPAKMNELLIFFSMLAGLSSFGFWGIVLGPAIVTLLSATLRVY 353


>gi|323947965|gb|EGB43959.1| TQSA AI-2 transporter tqsA [Escherichia coli H120]
          Length = 344

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|153956495|ref|YP_001397260.1| hypothetical protein CKL_3913 [Clostridium kluyveri DSM 555]
 gi|219856798|ref|YP_002473920.1| hypothetical protein CKR_3455 [Clostridium kluyveri NBRC 12016]
 gi|146349353|gb|EDK35889.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
 gi|219570522|dbj|BAH08506.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 351

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 47/340 (13%), Positives = 109/340 (32%), Gaps = 5/340 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +  + +++  I+ ++ +    +  P + A +              K +  S   ++I
Sbjct: 7   KIDKISIFFIVYTILFLTFFNTLDYTLPFVLAFLCALLLRKPTIFISKKLKIKSGIASLI 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN--QHGIPVPRWLSDIPGGMWASELW 123
            T+    + I  L+        E  +L                  +              
Sbjct: 67  TTLVFFTIIITLLVLGITTISQEAIQLGKNTQAYISKNSTDIYNSFYKLQKYYNDLDPYI 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L    +  +   + +       +  +            + ++F ++  +FF +D  S
Sbjct: 127 INTLEKNFTNFVTKTSNIVVGFSGKLVSYIINLIATIPYILMVVLFTLLTTYFFTKDMSS 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               + +L  +       KI     K++ +  L   II +   L     + +  V   V 
Sbjct: 187 SKINMQNLIPNNKTDKLLKIYSETKKMLGNYLLSYMIIILFTFLETIIVFLIFKVKYAVI 246

Query: 244 LGVITAIMAMIPG--GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           L VI AI  ++P      I      IYL++  N      L +   +   I+ + + P +V
Sbjct: 247 LSVICAIADLLPILGIGAIYIPIAFIYLIVFKNYVTFIGLLICYILV-SIIRQIIEPKIV 305

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              + +  +     L  G+++ G+ G+     L+    + 
Sbjct: 306 SSSLGIHPVAVLAALFIGLKSNGISGMIFCIFLVVFFNIF 345


>gi|118590999|ref|ZP_01548399.1| hypothetical protein SIAM614_20101 [Stappia aggregata IAM 12614]
 gi|118436521|gb|EAV43162.1| hypothetical protein SIAM614_20101 [Stappia aggregata IAM 12614]
          Length = 339

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 93/326 (28%), Gaps = 21/326 (6%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +I   L   +    P + ALI+ +    +   F            +++    +       
Sbjct: 1   MIGWLLVVGRSLILPFVIALIVWYMINALAHVFAHIPLGRWRLPRLVSFSLALLTIFFAG 60

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +     + + +L        +    +    S+        EL                
Sbjct: 61  TLVLDIVTVNLTQLAQDAPTYQRRLEELFAQTSNHLHLNDPIELKDLLPD---------- 110

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                     +PR  +    +      S   + I + F   +  +  ++ + L      A
Sbjct: 111 --------SIVPRMVTAGASLVTTLAGSASLVFIYVLFLVLEQSTFDRKFERLFPSPERA 162

Query: 199 YWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + + I   F   T +++  G++        G+P     G I  ++  IP  
Sbjct: 163 EAAFAMRAEINRSIMHYFTIKTAVSVATGVLTSLVLIAIGLPYAALFGFIAFLLNYIPTI 222

Query: 258 APISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             +        L       +     +     +  F +   + P L+G  + L  L     
Sbjct: 223 GSLIGVIFPSLLAIVYYDTLGPFIAIATGLGLIQFTIGNLVEPRLMGSNLNLSGLVIMLS 282

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
           L       G++G+ +   L  +I ++
Sbjct: 283 LAFWGAIWGVVGMVLCVPLTVMIVIV 308


>gi|196248998|ref|ZP_03147698.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
 gi|196211874|gb|EDY06633.1| sporulation integral membrane protein YtvI [Geobacillus sp.
           G11MC16]
          Length = 341

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 111/339 (32%), Gaps = 2/339 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RW+I+ ++L  + +L  +  P+L AL       P                        
Sbjct: 1   MRRWIIIVLLLAFVLWLLPYSVPLLLALATALLLEPSIRRLQENYRLKRVHAVTAIFTLF 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +    L FL    + ++  L  K+         V   L        +S       S  
Sbjct: 61  LVIVGFSLYFLIVILVQQVMALSQKLPYVFSEATKVLDELIQTWQSYSSSIPQEIIDSLE 120

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +S+  + +  L  +    + +    +      + +  +  ++ALF    D   + Q +  
Sbjct: 121 RSVNTVQQMLL--SFATNLTQSLVHYIAAIPAFFIHFLVYLVALFLICLDLPQLKQGIRR 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       +   + K          + ++    +  +   + GV     +  I  +
Sbjct: 179 YLSERTHQRLSMVVSQLSKAGVGFIKAQFLFSLITFFLALAGLLILGVDYAALMAFIIVV 238

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++P     S       + I           +   + + +V + + P +    + +  L
Sbjct: 239 VDILPILGTGSVLVPWGIISIINGSTGLGIGLIVLFVIITVVRRIIEPKVFSTNLGISPL 298

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                +  G + +GLLG FIGPV++ L+  + K  ++  
Sbjct: 299 AALVSVYLGFQILGLLGAFIGPVIVILVETLVKAGVIKW 337


>gi|288556236|ref|YP_003428171.1| sporulation integral membrane protein YtvI [Bacillus pseudofirmus
           OF4]
 gi|288547396|gb|ADC51279.1| sporulation integral membrane protein YtvI [Bacillus pseudofirmus
           OF4]
          Length = 374

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 109/347 (31%), Gaps = 10/347 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ++  + ++  + + +    L        P   A  I +   P       K + SS F + 
Sbjct: 7   LMILRTVIIAIALIVFGWLLINFFSLTYPFWIAAAIAWFLQPWVRFMREKLKFSSGFASF 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----------HGIPVPRWLSDIP 114
              +  + L    +    +     ++    ++    +          + +  P W   + 
Sbjct: 67  FGLLGSIILVSSVITGAIFLIGYSLRNFFQQIPGWIETSSISLQQFFNQVIFPFWQQILG 126

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                S    + L             L       +    +   M    + ++ +F+I+++
Sbjct: 127 IFDTFSYEEQEALRQSIVQLGSQVGSLLGQAGQTLVDRITHILMGVPTFLVAFVFIILSI 186

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           +F  +      ++        F    +     V   +        I+ +  GL++     
Sbjct: 187 YFMGKQWTFYREKTREALAPSFLLLIRDFGAAVRTRLFGFLKAQFILMMITGLIVLVGLS 246

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +  V   V L V+  I  ++P     +        L     F+           + IV +
Sbjct: 247 ILRVEHVVTLAVVIGIAELLPYLGTGTILIPWFVYLFIVGDFSLAIGLTILYGIIVIVRQ 306

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + P ++   + L  +     L  G++  G LGL  GPVL+  + ++
Sbjct: 307 LIEPKILSSNLDLNPVAVLISLFVGLQLFGALGLLFGPVLLVFLMIL 353


>gi|307719112|ref|YP_003874644.1| hypothetical protein STHERM_c14310 [Spirochaeta thermophila DSM
           6192]
 gi|306532837|gb|ADN02371.1| hypothetical protein STHERM_c14310 [Spirochaeta thermophila DSM
           6192]
          Length = 348

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 108/344 (31%), Gaps = 27/344 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +      +  + +  I   L+  +    P++ A ++ F   P+       +     
Sbjct: 1   MERLVRLQVIFLALLSLVAIGGVLHITQQVVLPLVIAALLSFILAPLVVRMHRARIPY-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +    VM L ++ +  L       +  L+ +        I +   L D        
Sbjct: 59  ---FLGITVVMLLLVLIIAGLGTLLSSSLYSLIREYPRYQTRFIGLYNTLVDRFHL---- 111

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                              F   + +  I  +        ++     + +++ L F   +
Sbjct: 112 ---------------REWLFNDLSWVRTIGSYLVGLSGRLVELVTYTVLVLLFLLFLLLE 156

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++         A   +I   + + I        +I++  GL++ +AY L G+  
Sbjct: 157 WRHLPRKMLRALRRGLTARIARILEHISEQISRYLAVKFLISLATGLLVWAAYSLIGLDF 216

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLR 297
               G++  +   IP         +S    +     +  +   +         ++   L 
Sbjct: 217 AFIWGLLAFLFNFIPNIGSAVVWGLSSLFAVIQFYPDWQHPLLVSGSMMFIQMVMGNLLE 276

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P L G  + L  +   F L+      G+ G+FI   L  ++ ++
Sbjct: 277 PKLAGEQLNLSPVVVLFSLLFWGWLWGVAGMFIAVPLTVIVKIV 320


>gi|226357951|ref|YP_002787691.1| permease; membrane protein [Deinococcus deserti VCD115]
 gi|226320194|gb|ACO48187.1| putative permease; putative membrane protein [Deinococcus deserti
           VCD115]
          Length = 333

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 89/341 (26%), Gaps = 32/341 (9%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                 +  + + + L  L+  +    P++   +I     P+      +          +
Sbjct: 5   SVSTVAIVTIAVLLTLGGLHVTQDATLPLVFGAVIALFFRPLQRRLEQRL--PRWLSVAL 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  +    + L  + Y   +  ++L         +GI +P                  
Sbjct: 63  IILLFLAFLALILGSVVYAVNVVAQDLPRYAERLKGYGIRLPD----------------- 105

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                            +     +           L        +++ L     +  +  
Sbjct: 106 ------------SLSSGSPSGSNVMGVVFGGLRAVLSPLGLTGLLLVFLVLLLAEADAWR 153

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           ++L                  + +         T+  +   ++      L G+P      
Sbjct: 154 RRLVQAFGAERGRRLTDAFGRMGRQFEQFMWVQTVTGLITAVLTWGICALVGLPFPFVWA 213

Query: 246 VITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+T ++   P    +       ++    G       + L   +    V   L P   G  
Sbjct: 214 VLTFVLEFFPTIGSLLSVVPPVLFAFAFGGAAQGALVLLGLTVVQLGVGSLLNPKWQGDR 273

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +KL      F +V      G+ G  I   L A IA++  E 
Sbjct: 274 LKLSPTVVAFSVVFWGWLWGVGGAIIAVPLTAGIALLLSEF 314


>gi|218282483|ref|ZP_03488742.1| hypothetical protein EUBIFOR_01324 [Eubacterium biforme DSM 3989]
 gi|218216579|gb|EEC90117.1| hypothetical protein EUBIFOR_01324 [Eubacterium biforme DSM 3989]
          Length = 385

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/345 (9%), Positives = 106/345 (30%), Gaps = 23/345 (6%)

Query: 2   RETMLNPQGIMRWMIMFIILVS------LYFLKGFFAPVLSALIIGFTSWPIYSSFISK- 54
           +E M     I   +I  +I         L ++     P L    + F    I ++ +   
Sbjct: 6   KEKMYQRLIIFTLLIGMVIYYFEKIFCFLGWIGQMCLPFLLGAGLAFVFNIISNNLMRYS 65

Query: 55  --------KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG--- 103
                    +       V++ + V  +F+  +  +    +  ++ L++            
Sbjct: 66  IKWFDIKDTKIKRIISNVLSVLIVFAVFVAFVGIVIPRILFSIQLLLTNFPQMIYELYIW 125

Query: 104 -IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            + + + +  I   +   ++         ++     ++L + G + I             
Sbjct: 126 LLDITKNIDVIHDSLKNLDINAFSTFAIDNVSKKISSWLVSGGANDIFGSIFTILSTTFS 185

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLG----EHLFPAYWKKISRIVPKVIRSTFLGM 218
           +       I+  F    +   + ++  SL             + + +++ ++  S   G 
Sbjct: 186 WFAQAFITIVFSFLLLFNKEQVVRETKSLLKAYLPEKNYDRVRHVLKLIVRIFTSYVGGT 245

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            +  +    ++ +   +  +P    +G++  I A++P    +    +  + +   +    
Sbjct: 246 CLECLILASLVTAGALILKIPYAFLVGLVVGIGALVPMFGALVAAILCAFFIAMTSPVQG 305

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
               +       +    + P +VG  +  P +     +  G    
Sbjct: 306 LTFIIMFICIQQVEGNFIYPHVVGKSVGFPPMYIIVAITIGANVA 350


>gi|323339562|ref|ZP_08079837.1| membrane protein [Lactobacillus ruminis ATCC 25644]
 gi|323093042|gb|EFZ35639.1| membrane protein [Lactobacillus ruminis ATCC 25644]
          Length = 355

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 108/340 (31%), Gaps = 16/340 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             L    + R++++  I+  LY  +   + +L   I  F    +  S     +  S  + 
Sbjct: 6   KFLENVRLRRFVVLLGIIGILYASRSIISVILLTFIFTFLITRLIMSIHRHVKIPSQLIV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +   ++++ L  + +       + + + +V+ V+   Q+       + +   G       
Sbjct: 66  IAVYLALIGLIYLAVTVYVPKLISQSEAMVASVLQFYQNPPKGANEVINFISGY------ 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    +  L          + + ++ +  G +     +S++          +    
Sbjct: 120 ---------VGKLDVMNQVKGSFEIVMKYVTSIGSMGFTLFMSLLLSFFFTIEERQMAEF 170

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L S             ++I             +IAI   ++  +      +P   +
Sbjct: 171 SKSFLTSGPFAWIFQDIYYFAKIFVNTFGVVMEAQFMIAIINTVITTTCLGFMKMPQLFS 230

Query: 244 LGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L ++  ++++IP    I     +       G + +   + +   +   I    L P L+ 
Sbjct: 231 LSLMIFVLSLIPVAGVIVSAVPLCFIGYTVGGLRDVFYIIVLLIVVHAIESYVLNPKLMS 290

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              +LP   TF  L       G  GL +G  +   +  + 
Sbjct: 291 SRTELPIFYTFVVLFVSEHLFGTWGLIVGIPIFTFMLDVL 330


>gi|172037187|ref|YP_001803688.1| hypothetical protein cce_2272 [Cyanothece sp. ATCC 51142]
 gi|171698641|gb|ACB51622.1| hypothetical protein cce_2272 [Cyanothece sp. ATCC 51142]
          Length = 357

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 93/328 (28%), Gaps = 15/328 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +K       +A+II         +   +      +  +++ V ++ +       +   
Sbjct: 20  WNIKQLLLLFFTAVIIANFINHGVQALQ-RFGIKRGYAVILSIVLLLTIVSGFFWLIVPP 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
              ++ +L   V       I   +             L +      Q             
Sbjct: 79  FAQQLPQLFKLVPQGIDQLIITIKDFISRLDPELIDALPSSQKIIEQ----------LQP 128

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            ++ I           L   L+ + ++        +  +  Q         +      I 
Sbjct: 129 ILERIAGQGLSVFYTTLGIPLTSLLLLALTLMLLVNPNAYRQGFIRFFPSFYRQKVDHIL 188

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +   + ++     +    +   L+      L  +P  +A  ++  I+  IP   P+    
Sbjct: 189 KECDRSLQGGLTIILFQMVMISLLSFIGLSLLKMPLTLAQSMLAGILTFIPNIGPVLSFI 248

Query: 265 VSIYLLIKGNIFN----ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             + + +  + +          ++  I     +K L P ++     L    T    V   
Sbjct: 249 PPVAIALLESQWKSFAVFILYVIFYIIIQIAKNKLLNPLVIENRKSLLPAFTLLSQVFFA 308

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMA 348
              G+LG F+   L  +  V   E ++ 
Sbjct: 309 GLFGVLGFFLALPLALVSQVWLHEVLVK 336


>gi|159030703|emb|CAO88376.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 345

 Score = 97.0 bits (240), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/337 (11%), Positives = 106/337 (31%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++ + + L  L+ ++     +  A++              +         +I  ++ +
Sbjct: 7   LGFICLIMALYVLWQIRQLLLLIFMAIVFTVALNRCVKGLQ-RLGIKRGLAILITLLTSL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+  + +    + + ++L+  +  A                  W   L        Q
Sbjct: 66  GIAILFFIIIVPPFIEQFQKLIELLPQAWNLVRNNSIQWRQQFQFDWLPSLPNLTDLGQQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                           F+      F    +   L ++F+++       +     Q    L
Sbjct: 126 ----------LQPLGTFVFSNFFTFFSNSVAAILQLLFVLVLAMMMLANPQPYRQAFLKL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             + +    ++I  +    + +  LG+ I +   GL+ G    +  +   +   ++  ++
Sbjct: 176 FPNFYRRRAEEILTLSEAGLGNWLLGIAISSTMVGLLSGFGLLVLQINLVLVHAILAGLL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P +     I + +    +    + +   I   +    L P ++   + L    
Sbjct: 236 NFIPNIGPTASVIFPILIAVIDAPWKIVAILILYFIIQNVESYLLTPTVMAKQVSLLPAI 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +   +  G+LGL +   L  ++     E +  
Sbjct: 296 TLIAQIFFAQMFGILGLLLALPLTVVVKTWLDELLFK 332


>gi|315185727|gb|EFU19494.1| protein of unknown function UPF0118 [Spirochaeta thermophila DSM
           6578]
          Length = 348

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 109/344 (31%), Gaps = 27/344 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   +      +  + +  I   L+  +    P++ A ++ F   P+       +     
Sbjct: 1   MERLVRLQVIFLALLSLVAIGGVLHITQQVVLPLVIAALLSFILAPLVVRMHRARIPY-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +    VM L ++ +  L       +  L+ +        I +   L D        
Sbjct: 59  ---FLGITVVMLLLVLIIAGLGTLLSSSLYSLIREYPRYQTRFIGLYNTLVDRFHL---- 111

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                              F   + +  I  +        ++     + +++ L F   +
Sbjct: 112 ---------------REWLFNDLSWVRTIGSYLVGLSGRLVELVSYTVLVLLFLLFLLLE 156

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +++         A   +I   + + I        +I++  GL++ +AY L G+  
Sbjct: 157 WRHLPRKMLRALRRGLTARIARILEHISEQISRYLAVKFLISLATGLLVWAAYSLIGLDF 216

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLR 297
               G++  +   IP         +S    +     +  +   +     +   ++   L 
Sbjct: 217 AFIWGLLAFLFNFIPNIGSAVVWGLSSLFAVIQFYPDWQHPLLVSGSMILIQMVMGNLLE 276

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           P L G  + L  +   F L+      G+ G+FI   L  ++ ++
Sbjct: 277 PKLAGEQLNLSPVVVLFSLLFWGWLWGVAGMFIAVPLTVIVKIV 320


>gi|260868092|ref|YP_003234494.1| putative inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|257764448|dbj|BAI35943.1| predicted inner membrane protein [Escherichia coli O111:H- str.
           11128]
 gi|323180915|gb|EFZ66453.1| hypothetical protein ECOK1180_0209 [Escherichia coli 1180]
          Length = 344

 Score = 97.0 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|111021262|ref|YP_704234.1| hypothetical protein RHA1_ro04285 [Rhodococcus jostii RHA1]
 gi|110820792|gb|ABG96076.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 357

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 105/334 (31%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+    + + +  +        P+  AL++     P+      K          +AT++
Sbjct: 7   VILGLAALVVTVAGIQVAASIVGPIFLALMLTVAVHPLPEWLHRK-----GLPTWLATIA 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +    +L L     L + +L + +         +                    L+ 
Sbjct: 62  AILVVNSIILVLVLSLALSVAQLATLLPEYADDFTALID-------------DAQSFLNS 108

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  S+T L       +  F        L    +++F++  L F   DG S   ++ 
Sbjct: 109 NGVNSTDSQTLLSQVDYGKVFGFVEGILQSMLGIFSNLLFVLALLLFMAVDGSSYGARMR 168

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                                 R+  +  T+  +   ++   A W  G+P  +  G+++ 
Sbjct: 169 --IVTQMRPDIATALTSFSAGTRTYLIVSTVFGLIVAVIDTGALWALGIPLPILWGLLSF 226

Query: 250 IMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    I        L + +G       + +  ++   I+   ++P  VG  + L 
Sbjct: 227 ITNYIPNVGFILGLVPPALLALLQGGPGLMLTVIVVYSVINVIIQSVIQPKFVGDAVGLS 286

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   L  +   + 
Sbjct: 287 VTFTFLSLVFWAWILGPLGAILAIPLSLMAKALL 320


>gi|266620765|ref|ZP_06113700.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
 gi|288867626|gb|EFC99924.1| sporulation integral membrane protein YtvI [Clostridium hathewayi
           DSM 13479]
          Length = 353

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/353 (11%), Positives = 104/353 (29%), Gaps = 13/353 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK------- 54
           + +    + I+   +   +  S  +L     P L A I      P       K       
Sbjct: 3   KPSRKLKKTILILGVTGAVYASFKYLLPLVIPFLIAYIFALALRPSAVWLEKKCRLPFKK 62

Query: 55  --KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
                    +  I  + +M LF   L +      +E       +                
Sbjct: 63  KEIHLPLAAIGGIQILILMVLFGTLLYYGGRKLFMEANLFFDNLPQMINSLDHWLTGCC- 121

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                         +   + + +     +K   + F+   +      F++  +  + + I
Sbjct: 122 FFTENLLRLPRGFLVKMLRDMLVGGGKAMKDAAMPFLMVNSMTVVRCFIEVTVMTVILFI 181

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           A     ++   I  + D+    +F   +  +   +  V  +       I      +  + 
Sbjct: 182 ATILSLQEMEDIRMRRDN---SIFRHEFALLGGRLSMVGSAWLKTQGSIMFLTMCICTAG 238

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +L G    + LG+   ++  +P     +         +    +          I  + +
Sbjct: 239 LFLMGNQYSLLLGIGIGLLDALPIFGTGTVLIPWALFRLVNGDWLYGIGLFVIYIICYFL 298

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +   ++   + L  L T   +  G++  GLLG  +GP+ + +I  + +  
Sbjct: 299 RQVMEAKIMADKVGLTPLETLISMYVGLQLFGLLGFILGPIGLLIIEDLVELY 351


>gi|218705101|ref|YP_002412620.1| putative transport protein [Escherichia coli UMN026]
 gi|293405102|ref|ZP_06649094.1| tqsA [Escherichia coli FVEC1412]
 gi|298380749|ref|ZP_06990348.1| tqsA [Escherichia coli FVEC1302]
 gi|300901603|ref|ZP_07119666.1| putative AI-2 transport protein TqsA [Escherichia coli MS 198-1]
 gi|301026725|ref|ZP_07190134.1| putative AI-2 transport protein TqsA [Escherichia coli MS 69-1]
 gi|218432198|emb|CAR13088.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli UMN026]
 gi|291427310|gb|EFF00337.1| tqsA [Escherichia coli FVEC1412]
 gi|298278191|gb|EFI19705.1| tqsA [Escherichia coli FVEC1302]
 gi|300354997|gb|EFJ70867.1| putative AI-2 transport protein TqsA [Escherichia coli MS 198-1]
 gi|300395372|gb|EFJ78910.1| putative AI-2 transport protein TqsA [Escherichia coli MS 69-1]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALFVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|292489976|ref|YP_003532868.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|292901002|ref|YP_003540371.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291200850|emb|CBJ47984.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291555415|emb|CBA23846.1| putative AI-2E family transporter [Erwinia amylovora CFBP1430]
 gi|312174165|emb|CBX82418.1| putative AI-2E family transporter [Erwinia amylovora ATCC BAA-2158]
          Length = 345

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 113/344 (32%), Gaps = 22/344 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           +R+  +    +++   + +IL  +        P + A+       P+ S  + +  +   
Sbjct: 4   LRQEKVGQNILLKLATLVVILAGIKMSAEIVVPFILAMFFAIVINPLVSVLVQRGIKRGM 63

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            ++++  + ++ L ++  +                                 +       
Sbjct: 64  AISLVVVILLLALALLVAMVAGS-------------------LQEFSEVYPQLQAQSVQK 104

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +H +   +L I S +  +      I   A+            ++ +I+ + F   +
Sbjct: 105 LGVIQHFAARFNLNISSTSLAQRLDPGAIMDVATTMLRQLSGAMTQLVLVIMTVIFMLFE 164

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +L      + P           K +        +I++  G+++  +    G+  
Sbjct: 165 VHHLPYKLRYAL--VNPQIHIAGLHKALKGVTHYLALKALISLVTGVLVWLSLLALGIKF 222

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  G++  ++  IP   P I+     +  L+      A  +         ++   L P 
Sbjct: 223 ALLWGIVAFVLNFIPNIGPVIAGIPPVLQALLLNTPLEAGLVAGLFVSIHMLLGNLLEPR 282

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+G  + L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 283 LLGRGLGLSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|15805923|ref|NP_294622.1| hypothetical protein DR_0898 [Deinococcus radiodurans R1]
 gi|6458616|gb|AAF10473.1|AE001942_5 conserved hypothetical protein [Deinococcus radiodurans R1]
          Length = 394

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 96/304 (31%), Gaps = 4/304 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV--IA 66
           + I+  +   +++       G  A +  A  + +T  P+       +      +A+  I 
Sbjct: 22  RLIVYAIAALLLIGLARQAAGGLALIAIAYALSYTFNPLLLWLEKHRITRPFGVALTLIV 81

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V+ +    +       +  +  L++ +    +H I      ++       ++L    
Sbjct: 82  VLGVIGVLFWSVASQVVSFLQGLPALLNSLPQLLEHLIGKGPGHNNAGISQTQAQLTQYV 141

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +L       L                   +++      ++    FF  D     +
Sbjct: 142 REQVDNLTRNFGPLLARVLSPD--SALYGQVSGVMNWLGQAGLVLTLAVFFMLDHSKFGR 199

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            L  +    +      +S  V K   +      I+ +    + G    L GVP+ +ALG+
Sbjct: 200 TLLRVFPKEWQPRLLLLSEDVSKSFGNYIRAQLILLLVISGISGVGLLLLGVPNALALGL 259

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T ++ ++P    +     ++   +         +     +   +    + P ++G  + 
Sbjct: 260 LTGLLNLVPLVGMVLAAIPALLQALPLGTTKVLIVAGLYFVLNQVAWNVIAPMVMGRTVN 319

Query: 307 LPFL 310
           L   
Sbjct: 320 LSAA 323


>gi|309776898|ref|ZP_07671868.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915309|gb|EFP61079.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 373

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 110/347 (31%), Gaps = 16/347 (4%)

Query: 11  IMRWMIMFIILVSLY-----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++  + + I    ++      L+    P +   ++ +   P+      K      F  + 
Sbjct: 24  VLLILFLLIKTQVVWGSWAGMLRSVMQPFVIGFVLAYVMHPLVEFLEKK-GIPKNFSIIA 82

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V V+   IV L+ L      ++ E ++ ++          + L ++      + +   
Sbjct: 83  LWVCVLVFLIVMLVMLMPVLYDKINEFMTSMIDGVVWISNKIKTLGNMKDFSLVNSITNN 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++  QS                +           L+   +I+F II   +   D   I 
Sbjct: 143 IVNMLQSYDDWVPQ---------LVSSLPGLMNTVLNMVTNILFSIIIAIYMLFDFDRIK 193

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L     HLF          + + +      + I+ + + +   + Y++ G    + +G
Sbjct: 194 LGLRKFI-HLFFKNSDVYLHEIDQNVTVYLKSLIILMLIKFVEYSAFYFMIGHQDWLIIG 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T+   +IP        ++ I   +     N   L +   I   +    + P +     
Sbjct: 253 LLTSFGVIIPYLGGTIANSIGIITALTLPPSNIVALIIGIMILSNVDAYVISPLVHEKRS 312

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +  L T F +  G    G +G+ +       I  + +         
Sbjct: 313 AMGPLVTLFAVFAGGVISGAVGIMVSVPAAIAIKTMMEVYEKRNDRK 359


>gi|254173525|ref|ZP_04880197.1| membrane protein [Thermococcus sp. AM4]
 gi|214032217|gb|EEB73047.1| membrane protein [Thermococcus sp. AM4]
          Length = 335

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 131/347 (37%), Gaps = 29/347 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   + + I+ +S   ++    P+   +++ +  +P++     +     + L + A + 
Sbjct: 8   AVWTVVSLVILYLSWRTVRPLVTPLFFGVLLAYIVYPLHMRLRRRFSAHESALVLTAIMI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   ++    L                            L +         L       
Sbjct: 68  GLGTALLVFFTLISI------------------------KLVNRFYMNVKDVLVWLSSLQ 103

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +++  +  +  + S F      Y L ++  + A ++    G  +   + 
Sbjct: 104 FSGTLQTFFEQVQSQIVPKLTDYVSSFTFSVPKYLLQLVVFLFAFYYALVYGEKLRGFIL 163

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS---HVALGV 246
           SL       +  +I     K + +      ++ + +G ++   Y + GV      +  G 
Sbjct: 164 SLVPGNQAPFMVEILDRTDKTLDALVRAWLLLNVAKGFLMTIGYVIFGVGDVYTAMIAGF 223

Query: 247 ITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGP 304
           +T + + +P     + + A ++YL ++G++  A  + ++GA+ +  + D T+RP LV   
Sbjct: 224 LTFLFSFVPLLEGWMLWVAGAVYLYMRGSLLGAIGISVYGAVLVSPLPDYTIRPMLVAKD 283

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +L     F G++GG    GL GL +GPV++++  V+ KE      E
Sbjct: 284 AELDETLVFIGMLGGTWAFGLKGLLLGPVILSIALVLLKEWKKRNSE 330


>gi|306813437|ref|ZP_07447627.1| putative transport protein [Escherichia coli NC101]
 gi|305853182|gb|EFM53622.1| putative transport protein [Escherichia coli NC101]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 101/337 (29%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  G V  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGQVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|126735527|ref|ZP_01751272.1| hypothetical protein RCCS2_16666 [Roseobacter sp. CCS2]
 gi|126714714|gb|EBA11580.1| hypothetical protein RCCS2_16666 [Roseobacter sp. CCS2]
          Length = 380

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 104/330 (31%), Gaps = 14/330 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++L ++     F  PV++A +  F                     VI+      + 
Sbjct: 36  IFCLLMLQAMIAASDFLVPVITAFLGYFVLNRPRRWLGQLGIPP-----VISAALFTTIL 90

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            + ++ L         + +  +                +     A E   +     + + 
Sbjct: 91  TLLIVVLLVQLSSPAAQFIEDLPSLMAEIQE------KLASAGGALEAINEASEAAEEMM 144

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGE 193
                      +       +    +   +   I+F ++ LFF    G     + + SL +
Sbjct: 145 SDKAAETVAVEVVSDTGIVATIFSMAPGFLSRIMFALVLLFFLVASGDMFLTKTVQSLNK 204

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   +   +     G+ II  G G+ +  A  L G+PS + LG +   +  
Sbjct: 205 FSDKKKAVEVLHTIEDRLGYYLGGIAIINAGLGVAVAVAMTLWGLPSAIILGFMAFGLNF 264

Query: 254 IPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P    +    ++  +        + A  +F    +   I  + + P  +   ++L    
Sbjct: 265 VPFVGGLIGAMIAAAVAFVSLDGTWTAMGVFATYIMLTSIEGQFITPLAISRRMRLNTTV 324

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            F  +        ++G+ +   ++ ++ ++
Sbjct: 325 VFLSVAFFAWIWSVMGMVVALPVLIVVKIV 354


>gi|293409912|ref|ZP_06653488.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470380|gb|EFF12864.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 103/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    ++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|110641723|ref|YP_669453.1| putative transport protein [Escherichia coli 536]
 gi|191174309|ref|ZP_03035816.1| putative permease, PerM family [Escherichia coli F11]
 gi|300978404|ref|ZP_07174254.1| putative AI-2 transport protein TqsA [Escherichia coli MS 200-1]
 gi|110343315|gb|ABG69552.1| putative membrane protein [Escherichia coli 536]
 gi|190905388|gb|EDV65020.1| putative permease, PerM family [Escherichia coli F11]
 gi|222033359|emb|CAP76100.1| UPF0118 inner membrane protein ydgG [Escherichia coli LF82]
 gi|300308136|gb|EFJ62656.1| putative AI-2 transport protein TqsA [Escherichia coli MS 200-1]
 gi|312946201|gb|ADR27028.1| putative transport protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|324014786|gb|EGB84005.1| putative AI-2 transport protein TqsA [Escherichia coli MS 60-1]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|299783257|gb|ADJ41255.1| Permease [Lactobacillus fermentum CECT 5716]
          Length = 366

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 103/337 (30%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVSVMCLFIV 76
           +   L  L     P+L   +I +    +         +  +           ++   ++ 
Sbjct: 29  VAGLLKTLLAAAMPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLS 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ +     +   +LV+ V L       V     +        +   + +   +     
Sbjct: 89  IVVVIGVVSSVVAPQLVACVKLLFSGQSKVIPQFINWLENESFLKSLWQQIDLSKINWTK 148

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +++L                   +    + +  I    +       ++ Q   L     
Sbjct: 149 VQSYLLNGASGTF-STVMSTASKVVSALTTTVVAIFFSIYLLLFKDRLACQFRLLLTTYL 207

Query: 197 P---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   A   ++  +  +   S  +G    A+  G        +  +P    +G + A+ A+
Sbjct: 208 PGQVARILRVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTAL 267

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   +V I ++   +   A    +         ++   P +VG  I LP +  F
Sbjct: 268 VPIIGALMGASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVF 327

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             ++ G    G+LG+     L A    + K  +   +
Sbjct: 328 VAVMVGGGVSGILGMMFTVPLFAAFYQLLKTDVAKRQ 364


>gi|313899413|ref|ZP_07832923.1| putative membrane protein [Clostridium sp. HGF2]
 gi|312955701|gb|EFR37359.1| putative membrane protein [Clostridium sp. HGF2]
          Length = 369

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 111/347 (31%), Gaps = 16/347 (4%)

Query: 11  IMRWMIMFIILVSLY-----FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++  + + I    ++      L+    P +   ++ +   P+      K      F  + 
Sbjct: 24  VLLILFLLIKTQVVWGSWYRMLRSILQPFIIGFVLAYVMHPLVEFLEKK-GIPKNFSIIA 82

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V V+   IV L+ L      ++ E ++ ++          + L ++      + +   
Sbjct: 83  IWVCVLVFLIVMLVMLMPVLYDKINEFMTSMIDGVVWISNKIKTLGNMKDFSLVNSITNN 142

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++  QS                +           L+   +++F II   +   D   I 
Sbjct: 143 IVNILQSYDDWVPQ---------LVSSLPGLMNTVLNVVTNVLFSIIIAIYMLFDFERIK 193

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L     HLF          + + +      + I+ + + +   + Y++ G    + +G
Sbjct: 194 RGLRKFV-HLFFKNSDIYLHEIDQNVTVYLKSLIILMLIKFIEYSAFYFMIGHQDWLIIG 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++T+   +IP        ++ I   +     N   L +   I   +    + P +     
Sbjct: 253 LLTSFGVIIPYLGGTIANSIGIITALTLPPSNIVALIIGIMILSNVDAYVISPLVHEKRS 312

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +  L T F +  G   MG +G+ +       I    +         
Sbjct: 313 AMGPLITLFAVFAGGVIMGAVGIMVSVPAAIAIKTAIEVYEQKTDRR 359


>gi|16129559|ref|NP_416118.1| pheromone AI-2 transporter [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24112988|ref|NP_707498.1| putative transport protein [Shigella flexneri 2a str. 301]
 gi|30063115|ref|NP_837286.1| putative transport protein [Shigella flexneri 2a str. 2457T]
 gi|89108442|ref|AP_002222.1| predicted inner membrane protein [Escherichia coli str. K-12
           substr. W3110]
 gi|110805574|ref|YP_689094.1| putative transport protein [Shigella flexneri 5 str. 8401]
 gi|170020046|ref|YP_001725000.1| putative transport protein [Escherichia coli ATCC 8739]
 gi|170081265|ref|YP_001730585.1| transporter of quorum signal AI-2 [Escherichia coli str. K-12
           substr. DH10B]
 gi|187731327|ref|YP_001880355.1| putative transport protein [Shigella boydii CDC 3083-94]
 gi|188492603|ref|ZP_02999873.1| putative permease, PerM family [Escherichia coli 53638]
 gi|191165884|ref|ZP_03027721.1| putative permease, PerM family [Escherichia coli B7A]
 gi|194436582|ref|ZP_03068683.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|218554168|ref|YP_002387081.1| putative transport protein [Escherichia coli IAI1]
 gi|218699833|ref|YP_002407462.1| putative transport protein [Escherichia coli IAI39]
 gi|238900817|ref|YP_002926613.1| putative inner membrane protein [Escherichia coli BW2952]
 gi|253773443|ref|YP_003036274.1| transporter [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254161662|ref|YP_003044770.1| putative transport protein [Escherichia coli B str. REL606]
 gi|256018207|ref|ZP_05432072.1| putative transport protein [Shigella sp. D9]
 gi|256022739|ref|ZP_05436604.1| putative transport protein [Escherichia sp. 4_1_40B]
 gi|293414917|ref|ZP_06657560.1| tqsA [Escherichia coli B185]
 gi|293445975|ref|ZP_06662397.1| tqsA [Escherichia coli B088]
 gi|300819341|ref|ZP_07099540.1| putative AI-2 transport protein TqsA [Escherichia coli MS 107-1]
 gi|300821531|ref|ZP_07101678.1| putative AI-2 transport protein TqsA [Escherichia coli MS 119-7]
 gi|300907258|ref|ZP_07124914.1| putative AI-2 transport protein TqsA [Escherichia coli MS 84-1]
 gi|300918734|ref|ZP_07135309.1| putative AI-2 transport protein TqsA [Escherichia coli MS 115-1]
 gi|300927438|ref|ZP_07143157.1| putative AI-2 transport protein TqsA [Escherichia coli MS 182-1]
 gi|300931463|ref|ZP_07146787.1| putative AI-2 transport protein TqsA [Escherichia coli MS 187-1]
 gi|300951053|ref|ZP_07164924.1| putative AI-2 transport protein TqsA [Escherichia coli MS 116-1]
 gi|301029241|ref|ZP_07192353.1| putative AI-2 transport protein TqsA [Escherichia coli MS 196-1]
 gi|301303109|ref|ZP_07209235.1| putative AI-2 transport protein TqsA [Escherichia coli MS 124-1]
 gi|301647765|ref|ZP_07247557.1| putative AI-2 transport protein TqsA [Escherichia coli MS 146-1]
 gi|307138251|ref|ZP_07497607.1| putative transport protein [Escherichia coli H736]
 gi|307310829|ref|ZP_07590475.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|312969617|ref|ZP_07783800.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|331642185|ref|ZP_08343320.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H736]
 gi|331663068|ref|ZP_08363978.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA143]
 gi|331673175|ref|ZP_08373943.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA280]
 gi|84027916|sp|P0AFS5|TQSA_ECOLI RecName: Full=AI-2 transport protein tqsA; AltName: Full=Transport
           of quorum-sensing signal protein
 gi|84027917|sp|P0AFS6|TQSA_SHIFL RecName: Full=AI-2 transport protein tqsA; AltName: Full=Transport
           of quorum-sensing signal protein
 gi|1742635|dbj|BAA15335.1| predicted inner membrane protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787885|gb|AAC74673.1| pheromone AI-2 transporter [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24051948|gb|AAN43205.1| putative transport protein [Shigella flexneri 2a str. 301]
 gi|30041364|gb|AAP17093.1| putative transport protein [Shigella flexneri 2a str. 2457T]
 gi|110615122|gb|ABF03789.1| putative transport protein [Shigella flexneri 5 str. 8401]
 gi|169754974|gb|ACA77673.1| protein of unknown function UPF0118 [Escherichia coli ATCC 8739]
 gi|169889100|gb|ACB02807.1| transporter of quorum signal AI-2 [Escherichia coli str. K-12
           substr. DH10B]
 gi|187428319|gb|ACD07593.1| putative permease, PerM family [Shigella boydii CDC 3083-94]
 gi|188487802|gb|EDU62905.1| putative permease, PerM family [Escherichia coli 53638]
 gi|190904015|gb|EDV63727.1| putative permease, PerM family [Escherichia coli B7A]
 gi|194424614|gb|EDX40600.1| putative permease, PerM family [Escherichia coli 101-1]
 gi|218360936|emb|CAQ98508.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI1]
 gi|218369819|emb|CAR17590.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli IAI39]
 gi|238862552|gb|ACR64550.1| predicted inner membrane protein [Escherichia coli BW2952]
 gi|242377332|emb|CAQ32077.1| transporter of quorum signal AI-2 [Escherichia coli BL21(DE3)]
 gi|253324487|gb|ACT29089.1| protein of unknown function UPF0118 [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973563|gb|ACT39234.1| predicted inner membrane protein [Escherichia coli B str. REL606]
 gi|253977758|gb|ACT43428.1| predicted inner membrane protein [Escherichia coli BL21(DE3)]
 gi|260449277|gb|ACX39699.1| protein of unknown function UPF0118 [Escherichia coli DH1]
 gi|281601034|gb|ADA74018.1| putative permease [Shigella flexneri 2002017]
 gi|291322805|gb|EFE62233.1| tqsA [Escherichia coli B088]
 gi|291432565|gb|EFF05544.1| tqsA [Escherichia coli B185]
 gi|299877844|gb|EFI86055.1| putative AI-2 transport protein TqsA [Escherichia coli MS 196-1]
 gi|300400991|gb|EFJ84529.1| putative AI-2 transport protein TqsA [Escherichia coli MS 84-1]
 gi|300414117|gb|EFJ97427.1| putative AI-2 transport protein TqsA [Escherichia coli MS 115-1]
 gi|300416613|gb|EFJ99923.1| putative AI-2 transport protein TqsA [Escherichia coli MS 182-1]
 gi|300449656|gb|EFK13276.1| putative AI-2 transport protein TqsA [Escherichia coli MS 116-1]
 gi|300460736|gb|EFK24229.1| putative AI-2 transport protein TqsA [Escherichia coli MS 187-1]
 gi|300526034|gb|EFK47103.1| putative AI-2 transport protein TqsA [Escherichia coli MS 119-7]
 gi|300528112|gb|EFK49174.1| putative AI-2 transport protein TqsA [Escherichia coli MS 107-1]
 gi|300841518|gb|EFK69278.1| putative AI-2 transport protein TqsA [Escherichia coli MS 124-1]
 gi|301074135|gb|EFK88941.1| putative AI-2 transport protein TqsA [Escherichia coli MS 146-1]
 gi|306909007|gb|EFN39503.1| protein of unknown function UPF0118 [Escherichia coli W]
 gi|309701826|emb|CBJ01138.1| putative membrane protein [Escherichia coli ETEC H10407]
 gi|310337902|gb|EFQ02991.1| conserved hypothetical protein [Escherichia coli 1827-70]
 gi|313649058|gb|EFS13494.1| hypothetical protein SF2457T_2529 [Shigella flexneri 2a str. 2457T]
 gi|315060907|gb|ADT75234.1| predicted inner membrane protein [Escherichia coli W]
 gi|315136241|dbj|BAJ43400.1| putative transport protein [Escherichia coli DH1]
 gi|315257602|gb|EFU37570.1| putative AI-2 transport protein TqsA [Escherichia coli MS 85-1]
 gi|320178611|gb|EFW53575.1| Putative transport protein [Shigella boydii ATCC 9905]
 gi|320184783|gb|EFW59574.1| Putative transport protein [Shigella flexneri CDC 796-83]
 gi|320197784|gb|EFW72392.1| Putative transport protein [Escherichia coli EC4100B]
 gi|323152898|gb|EFZ39168.1| hypothetical protein ECEPECA14_5257 [Escherichia coli EPECa14]
 gi|323164395|gb|EFZ50198.1| hypothetical protein SS53G_5288 [Shigella sonnei 53G]
 gi|323185861|gb|EFZ71218.1| hypothetical protein ECOK1357_0591 [Escherichia coli 1357]
 gi|323378523|gb|ADX50791.1| protein of unknown function UPF0118 [Escherichia coli KO11]
 gi|323937394|gb|EGB33672.1| TQSA AI-2 transporter tqsA [Escherichia coli E1520]
 gi|323940323|gb|EGB36515.1| TqsA transporter [Escherichia coli E482]
 gi|323962231|gb|EGB57823.1| TqsA transporter [Escherichia coli H489]
 gi|323973765|gb|EGB68939.1| TqsA transporter [Escherichia coli TA007]
 gi|324019469|gb|EGB88688.1| putative AI-2 transport protein TqsA [Escherichia coli MS 117-3]
 gi|331038983|gb|EGI11203.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H736]
 gi|331058867|gb|EGI30844.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA143]
 gi|331069373|gb|EGI40760.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA280]
 gi|332101609|gb|EGJ04955.1| conserved hypothetical protein [Shigella sp. D9]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|167461645|ref|ZP_02326734.1| hypothetical Membrane Spanning Protein [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 371

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 7/322 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              AP+  + +I     P       K          I+T S + L +  +  L  +   +
Sbjct: 34  SIAAPLFWSFVIFLMIEPFARFLNRK-GLRKGLATTISTFSFIILILAFVTVLGLFLTNQ 92

Query: 89  MKELVSKVVLANQHGIPVPR------WLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +  L+ K+                              + + +  ++         T   
Sbjct: 93  VASLIEKIPGYANIIQHQIAGTTTYIQKKMQNLPPDTLDKFQEFANNLTETATKFTTAFL 152

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +DF       F   F    ++ +  II  FF   +  S  +             +  
Sbjct: 153 KGILDFFKGGLLSFFTSFSGIMVNFVVGIILAFFLSLEIESWKKGARRKISPSLLNTFTF 212

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V K +        I+     +++  +  +  V + ++L ++  ++ ++P     +F
Sbjct: 213 LKENVGKGVSGYIKSQLILVSITFVIVLVSLIILRVENALSLSIMAGVIDVLPLLGISAF 272

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I  L   N +              +V + + P + G  + +     F  ++  +  
Sbjct: 273 FIPWIIYLFIINNYPLAIALSIVLGITLLVRQIMEPKITGQALGVSPFTMFAFMIVSLSV 332

Query: 323 MGLLGLFIGPVLMALIAVIWKE 344
            G+ G  I PVL+  +  ++KE
Sbjct: 333 FGVFGFIISPVLLITLKALYKE 354


>gi|331657566|ref|ZP_08358528.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA206]
 gi|331055814|gb|EGI27823.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli TA206]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 101/337 (29%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+           +        +I   +
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAIQHAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV  +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|302389809|ref|YP_003825630.1| sporulation integral membrane protein YtvI [Thermosediminibacter
           oceani DSM 16646]
 gi|302200437|gb|ADL08007.1| sporulation integral membrane protein YtvI [Thermosediminibacter
           oceani DSM 16646]
          Length = 352

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/333 (11%), Positives = 114/333 (34%), Gaps = 2/333 (0%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   + + ++ + +  +  +  P    ++I     PI +    K + S   + ++   ++
Sbjct: 11  VYLGLAIAVVSIVIAIVLKYLLPFAVGMLIALMIDPIVNRIELKLKISRGIVVILVLSAI 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                  ++        E+ +L++ +         +   +          ++  K +   
Sbjct: 71  FSALGYLIILAISRLTFELGKLINILPSYTDFLSAILSDIGSFMFS--IYDIIPKTVLDY 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                       T  +     F      +  +  + +IF  ++ +FF +D   I   +  
Sbjct: 129 LLKNWGQIISYLTGFLSNFYTFLVEKLGLIPNILVFLIFTFLSSYFFAKDKKRIMISIRK 188

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +  H F    + I   +             + +   L+  + +++  V   + LG+I  +
Sbjct: 189 ILPHNFYKKLENIQLELLISFVGLIKAQITLVMISTLITIAGFYILKVDYALTLGIICGV 248

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++P   P                       +   + +    + L+  ++G  + L  +
Sbjct: 249 LDVLPIFGPSIIFIPWAVFSAIVGNIKFAIALIALYLVVVGCRQVLQAKVIGTHLGLDPI 308

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                +  G++  G LGLFIGP+++ ++  + +
Sbjct: 309 VALISIYVGIKIFGFLGLFIGPLVVVIVRAVIQ 341


>gi|289434213|ref|YP_003464085.1| hypothetical protein lse_0846 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170457|emb|CBH26997.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 348

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 113/352 (32%), Gaps = 19/352 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENNTARRVLVFILIGIVLYLLRSMINLILLTFIFAFLVTRLENVILKRVRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYTLVALFLYVAIVHFLPILIDQISQLVDSLVKIYNNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NAVAKWVVGFLKESNIEKYLQTGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q L S    +F        +              +IA+   ++   A +L   P  +
Sbjct: 168 FTGQFLTSKVGFIFKE-AAFFGKKFVGTFGVVLEAQLMIALVNTIITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G + +   + L   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGLQDVFYILLTVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                LP   TF  L+      G+ GL +G  +   +  I        KE +
Sbjct: 287 SSKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILDVRNAEDKEKR 338


>gi|19746066|ref|NP_607202.1| hypothetical protein spyM18_1078 [Streptococcus pyogenes MGAS8232]
 gi|50914183|ref|YP_060155.1| hypothetical protein M6_Spy0837 [Streptococcus pyogenes MGAS10394]
 gi|139473790|ref|YP_001128506.1| hypothetical protein SpyM50949 [Streptococcus pyogenes str.
           Manfredo]
 gi|306827377|ref|ZP_07460664.1| possible permease [Streptococcus pyogenes ATCC 10782]
 gi|19748236|gb|AAL97701.1| hypothetical protein spyM18_1078 [Streptococcus pyogenes MGAS8232]
 gi|50903257|gb|AAT86972.1| Hypothetical membrane spanning protein [Streptococcus pyogenes
           MGAS10394]
 gi|134272037|emb|CAM30276.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
 gi|304430524|gb|EFM33546.1| possible permease [Streptococcus pyogenes ATCC 10782]
          Length = 382

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 46/338 (13%), Positives = 110/338 (32%), Gaps = 13/338 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P        +    + S++               +       ++A ++   L    +  
Sbjct: 47  LPFFYGAAGAYIVNIVMSAYEKVYVYIFKDWSHVLKVKRGICLLLAYLTFFILITWIISI 106

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L     +  Q  +        +   +       K      +        
Sbjct: 107 VIPDLITSISTLTKFDTITIQEVVNNLEHNKLLARTIQYIGGDGKLTETIANYSQQLLKQ 166

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T   + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 167 FLTVLTN-ILTSVTVIASAIINLFISFVFSLYVLASKEDLCRQGNTLVDTYTG-KYAKRI 224

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++ +     F+  T+ A+  G +  S  ++  +P    +GV+ A  A+IP     
Sbjct: 225 HYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLPFAGTIGVLVAFTALIPVIGAS 284

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 285 IGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPKVVGGSIGLPAMWVLMAITIGA 344

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++G+     L A +  + K++I   +  ++K  S
Sbjct: 345 SLKGIVGMITAVPLAATLYQVIKDNIQKRQAIQKKQVS 382


>gi|54294930|ref|YP_127345.1| hypothetical protein lpl2009 [Legionella pneumophila str. Lens]
 gi|54297959|ref|YP_124328.1| hypothetical protein lpp2014 [Legionella pneumophila str. Paris]
 gi|296107646|ref|YP_003619347.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
 gi|53751744|emb|CAH13166.1| hypothetical protein lpp2014 [Legionella pneumophila str. Paris]
 gi|53754762|emb|CAH16249.1| hypothetical protein lpl2009 [Legionella pneumophila str. Lens]
 gi|295649548|gb|ADG25395.1| Predicted permease [Legionella pneumophila 2300/99 Alcoy]
 gi|307610760|emb|CBX00371.1| hypothetical protein LPW_20931 [Legionella pneumophila 130b]
          Length = 352

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 108/337 (32%), Gaps = 21/337 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              ++++I    L   +G   P++ ++ +      I S         +   + I  +  +
Sbjct: 9   AGLILVWITGYLLIAGRGLLIPIVISIFVWHLLNTINSGVQKIPFIGTHLPSWIRMILSL 68

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +  ++ L       + ++++      ++ + +   L          +  +       
Sbjct: 69  FVVVCLVMVLINIITNNVSDVIAASPRYQENLLHIFNSLDQRFHVKGIFDFDSLIQGL-- 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                            I         +F     S + + + + F + +    +Q++D+ 
Sbjct: 127 ----------------SIQSMLVNIYGVFTTITSSAVLISLYVVFLFVEQHYFTQKMDAF 170

Query: 192 GEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     K I   + K  ++     T++++    +        G+       ++   
Sbjct: 171 FPQAEHRKLVKNIISHITKDTQTYLGIKTLLSLLTATLSWFIMKWVGLDFAEFWALLIFF 230

Query: 251 MAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    I  +    ++ L+   + +    +        F V   L P L+G  + L 
Sbjct: 231 LNYIPNIGAIVATAFPAALALIQFESWWPFLEVTSGIVAIQFFVGNFLEPRLLGKSLNLS 290

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L   F L       G+LG+F+   +  ++ +I+   
Sbjct: 291 PLVILFALALWGAIWGVLGMFLSVPITVMMMIIFAHF 327


>gi|300864368|ref|ZP_07109241.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300337643|emb|CBN54387.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 345

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 114/343 (33%), Gaps = 21/343 (6%)

Query: 6   LNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           LN   ++R++++F    +    L + +        A ++ F       S   K+      
Sbjct: 13  LNNSTLVRFLLLFASGWAFLTLLAYFETVIVVFTIASLVAFLLSYPVRSL--KRFLPHGS 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + + +   + +    + + ++L+  +        P+   L           
Sbjct: 71  AVTLVFLLSIIIVVSLSVTVGVTLLSQGQQLIDSITEFVNALAPLSDRLEGFLRERNLQV 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    ++  +                 +           ++ IF+    FF   DG
Sbjct: 131 NLRVIEEQLRTQALGGIV------------SSITLLQTVFTNVITFIFITAVSFFMLLDG 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + Q + +          ++ +R + +     F    I+ +           +  V   
Sbjct: 179 ERLWQLMLNFLP---KHLHRRFARTIERNFLGFFQAQIILMLFLVTASFIVLLILNVRFA 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L VI     +IPG       A+  ++++  N + A  + +   I   I D  + P ++
Sbjct: 236 LILAVILGAFDLIPGIGATLGIALVFFIVLAQNYWLAFKVLIACIILQQIQDNIIHPRIM 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              + L  +  FF L+ G R  GLLG+F+   L  +I   ++ 
Sbjct: 296 KNSLNLNPVVVFFALLVGARAAGLLGIFLAIPLAGVIVSWFEI 338


>gi|73669708|ref|YP_305723.1| hypothetical protein Mbar_A2217 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396870|gb|AAZ71143.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 351

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 119/336 (35%), Gaps = 7/336 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
                 + +F+I V++Y  K FF+ +L +  I +   P+YS   S+ +      A  + +
Sbjct: 8   NKFTILVTIFVIAVAIYITKSFFSVILFSFFIAYLLVPLYSYLESRIKYRR-IAAAASVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +FI+  + + Y  + E+  L++      Q    +   +  I            + S
Sbjct: 67  LALTIFILIGIRIIYVVVNEVLTLLNSPENLQQLTKNITSRVIKIIEVN-----VHFNSS 121

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        L                       ++II  +I  ++F   G     QL
Sbjct: 122 EVTNQVDQFILSLTDTYFPPTKSLVIFLTATLPFDIVAIIVALIFSYYFLLTGNKSIDQL 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +          K   + +  +    F    + +   G++     +L  V     L  + 
Sbjct: 182 LNFVPDKNEKEIKLFLKELDVIYSGLFRQHFVTSAIIGVIALIGLYLLDVSYPGVLASLI 241

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +++M P    P  +  ++ Y ++  +   A  + ++      + D  LRP L+     +
Sbjct: 242 FLLSMYPLVGLPGIYLPLTAYYILLQDYNKALQILIFSLALNTLQDYYLRPKLIQEKGSV 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             + T       +  +G+ GL IGP +   +  +++
Sbjct: 302 HPVITIIAFGAPLLVIGITGLVIGPAVYGFLLALYR 337


>gi|301050165|ref|ZP_07197061.1| putative AI-2 transport protein TqsA [Escherichia coli MS 185-1]
 gi|300298114|gb|EFJ54499.1| putative AI-2 transport protein TqsA [Escherichia coli MS 185-1]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIESLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|134045617|ref|YP_001097103.1| hypothetical protein MmarC5_0574 [Methanococcus maripaludis C5]
 gi|132663242|gb|ABO34888.1| protein of unknown function UPF0118 [Methanococcus maripaludis C5]
          Length = 321

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/327 (16%), Positives = 116/327 (35%), Gaps = 21/327 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F      Y L  F   +  A+ + + + P+Y     K   S         +  +   ++
Sbjct: 2   IFSFFALSYMLWPFIGIIALAVAVAYMTKPLYDVLKPKLGRSYGA------IFCLLGIVI 55

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
           P L L      ++   +  + + +      P        G+  S++              
Sbjct: 56  PSLLLVTLVAEDVITFLLSLDIDSIMLQVTPILSDMGYLGVPPSDVSQPVSDIW------ 109

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                       +    +          + ++F+    F+F +DG  I            
Sbjct: 110 -------GVSKPLLNNLATQISAVPSLLMRLLFLSFMTFYFLKDGDKIKDSFLLYIPKEK 162

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                     + K +++ F+G  + ++  G +    YWL G+P+ + LG ++ I+ ++P 
Sbjct: 163 KRNTLLFVNEIHKALKTLFIGNVVTSLIVGFISIIGYWLIGLPNPITLGALSGILNILPV 222

Query: 257 GAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFF 314
               +    +++Y L+ G       L  +G + L +  D  +RP ++     L       
Sbjct: 223 VGGWTIYVPLTVYYLLTGEFTKGILLGFFGIVFLSLAPDFAIRPRVISKDGDLHPALVLI 282

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + G    G+ GL IGP+++AL+  I
Sbjct: 283 AFLIGPLVFGIPGLAIGPIIVALVYAI 309


>gi|118475422|ref|YP_891668.1| acid membrane antigen A [Campylobacter fetus subsp. fetus 82-40]
 gi|118414648|gb|ABK83068.1| acid membrane antigen A [Campylobacter fetus subsp. fetus 82-40]
          Length = 367

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 123/349 (35%), Gaps = 21/349 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +    + I+F++   L+  + +   +   +++   +  I ++F+      +   A I
Sbjct: 17  PTNRLFFGFFILFLLCWVLFLFQSYLLTISIGVLLAVATSNIQNAFLRFTNGKAALSAAI 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ +  +F +PL++     +         +   +     +  +   +P  +   E   K
Sbjct: 77  TTLFLCTVFFLPLIYAVIEIVKNAANF--DIKSISHTIDYIKNFDLKLPQALSFLEPKIK 134

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L     L            I  +  +A        ++ + I F+++ LFF +       
Sbjct: 135 ELIAGIDLP---------TLIRKVLSYAKGSLEKSANFLIDISFIMLFLFFSHFYANFFK 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +   +     + I   V   +   F       I +G +        G    +   
Sbjct: 186 SYIKKVSP-IAKYELEAIFSEVANTMSVVFYSTIANMILQGFLFAIIASFYGFDGLLFGV 244

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP------ 298
           +      +   G  + +  +S++    G+   A  + ++  + +  + D  ++P      
Sbjct: 245 LFAFSSLIPVVGGALVYIPLSVFEFSLGDTKAAIIILVYSIVVISTLADNFVKPLVIKFI 304

Query: 299 --FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              L+  P K+  L  FF ++ G+ + G  G+ +GP ++ L++   +  
Sbjct: 305 NEKLLKTPAKMNELLIFFSMLAGLSSFGFWGIVLGPAIVTLLSATLRVY 353


>gi|309793364|ref|ZP_07687791.1| putative AI-2 transport protein TqsA [Escherichia coli MS 145-7]
 gi|308122951|gb|EFO60213.1| putative AI-2 transport protein TqsA [Escherichia coli MS 145-7]
          Length = 344

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 103/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+       +   +        +I + +
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKIQQMMARPVEGMAAIQRAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV  +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|262382952|ref|ZP_06076089.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301307733|ref|ZP_07213690.1| conserved hypothetical protein [Bacteroides sp. 20_3]
 gi|262295830|gb|EEY83761.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300834407|gb|EFK65020.1| conserved hypothetical protein [Bacteroides sp. 20_3]
          Length = 337

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 130/339 (38%), Gaps = 20/339 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + ++  + +  F   +L A  I             K      F A++     +  F
Sbjct: 18  IILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILCF 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++P+    +  + + + +     +    G  +   + +                  ++  
Sbjct: 78  LIPITLAIWLVINKTQNINLDPTVLLNTGQHIADLVQE------------------KTGF 119

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            + +          +P+           + ++++ +I  L+F    G  +   L +L   
Sbjct: 120 DVLDRGNLLKAASILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFPF 179

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +I
Sbjct: 180 S-DQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATII 238

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T 
Sbjct: 239 PIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLITV 298

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           FG+V G+   G +G+  GP+L++L  +       +  + 
Sbjct: 299 FGVVIGLSLFGFMGIIFGPLLLSLFLLCIDIFKKSYLDK 337


>gi|220904315|ref|YP_002479627.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219868614|gb|ACL48949.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 368

 Score = 96.6 bits (239), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 61/365 (16%), Positives = 122/365 (33%), Gaps = 23/365 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE----------- 56
            Q + R + +  +L     L      +  A  +   + P Y     K             
Sbjct: 2   TQTMPRLLYLLAVLAWYLLLLPNPVTIFMAACLSCLTLPQYRKLRQKARAWRIRIERSRP 61

Query: 57  --ESSTFLAVIA--------TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
                  L               ++   IVP+  L      +     +++     +   +
Sbjct: 62  DSRKRRLLISFVNSSPLYGYITMLIAALIVPIAVLVLLVSPQAAAGFTRLRELQANNFQL 121

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
           P    +       S      L    +  ++         +  +      F    +    +
Sbjct: 122 PVEWVNYIQQWRQSLTEHPRLERAFNDLLMRLDSFFDTAMGLLLSRGVDFLGGTMTVLWT 181

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
               +     F      + +    +  H+  +  ++    + + +R   LG+ ++A+ +G
Sbjct: 182 SFLFVSLTVIFTIYSRRVRKITGRIF-HISQSMLRRFITAIHRALRGIMLGIVLVALAQG 240

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWG 285
            + G A+ +AGV      G++  ++A IP     + +  + I L   G    A  L LWG
Sbjct: 241 FLCGVAFAVAGVNQPAFWGLLATLVAPIPMVGTALVWLPLCISLWFTGKSMAAIGLGLWG 300

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            + +  VD  LRP  +   IK PF      ++ G+ + G +GL  GPVL+A      +E+
Sbjct: 301 MLAVAGVDNVLRPLFLRQGIKAPFFVLIIAILCGLSSFGPVGLIAGPVLLAFAMQAVEEA 360

Query: 346 IMAIK 350
               K
Sbjct: 361 NRIYK 365


>gi|82776830|ref|YP_403179.1| putative transport protein [Shigella dysenteriae Sd197]
 gi|81240978|gb|ABB61688.1| putative transport protein [Shigella dysenteriae Sd197]
          Length = 344

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 111/337 (32%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +       +++ T+
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAASILMTI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++                       N+    +P++ + I   + A E   + + 
Sbjct: 72  ILMAMVLLLAYLG---------------SALNELTRTLPQYRNSIMTPLQALEPLLQRVG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+  L+        +  +    ++         L ++ ++  L    +      Q +
Sbjct: 117 IDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 177 AR------PVEGMAAIQRAIGSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|294497247|ref|YP_003560947.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
 gi|295702619|ref|YP_003595694.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
 gi|294347184|gb|ADE67513.1| sporulation integral membrane protein YtvI [Bacillus megaterium QM
           B1551]
 gi|294800278|gb|ADF37344.1| sporulation integral membrane protein YtvI [Bacillus megaterium DSM
           319]
          Length = 343

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 110/325 (33%), Gaps = 1/325 (0%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +   +V +  L  +  P++ AL+       I        +    +  ++  +  +   I+
Sbjct: 8   VIASIVIVCLLIPYSLPIVFALLTALALEGIVQKLHQSFKMKRVYAVLMTFILYVVSLIL 67

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
              F+    + ++  L        +       + + I    +++ L T+ +S  +     
Sbjct: 68  IGFFIVRTIVTQVVALSKIAPSFVKEIYETAIYPTIIKWKYYSNALPTEVISSIERTLEK 127

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +   L +     +      F      + L  +  ++AL F   +  +I  ++ S      
Sbjct: 128 TVNSLDSLLKSTV-EIIISFAATVPGFLLEFLIYLVALVFISLELPAIKNKIKSFLTEET 186

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
               + +   + +          I+++   ++     WL  VP    L ++  I+ ++P 
Sbjct: 187 KYKLQVVITQLIQAGVGFIKAQIILSVMTFVMAYVGLWLLDVPYTALLSLLIVIVDILPI 246

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               S         +     +           + +V + + P +    + +  L     L
Sbjct: 247 LGTGSVLVPWGIFALTQGHDSLAIGLFILFGVITVVRRVVEPKVFSTNMGISPLAALVSL 306

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
             G + +G +GLF+GP L+ L   +
Sbjct: 307 YIGFKLLGFVGLFLGPALVILYDAL 331


>gi|256838584|ref|ZP_05544094.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739503|gb|EEU52827.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 337

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 130/339 (38%), Gaps = 20/339 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + ++  + +  F   +L A  I             K      F A++     +  F
Sbjct: 18  IILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILCF 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++P+    +  + + + +     +    G  +   + +                  ++  
Sbjct: 78  LIPITLAIWLVINKTQNINLDPTVLLNTGQHIADLVQE------------------KTGF 119

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            + +          +P+           + ++++ +I  L+F    G  +   L +L   
Sbjct: 120 DVLDRGNLIKAASILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFPF 179

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +I
Sbjct: 180 S-DQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATII 238

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T 
Sbjct: 239 PIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLITV 298

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           FG+V G+   G +G+  GP+L++L  +       +  + 
Sbjct: 299 FGVVIGLSLFGFMGIIFGPLLLSLFLLCIDIFKKSYLDK 337


>gi|254432666|ref|ZP_05046369.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
 gi|197627119|gb|EDY39678.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
          Length = 353

 Score = 96.6 bits (239), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 84/288 (29%), Gaps = 4/288 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
             + +A+++      +      +         +++   V  +  +    +    + +  E
Sbjct: 27  MTLFAAVVLAMALCTLVGWVRQRLGCGRPLAVLLSLGLVSVVAAILATAVIPPFIDQFAE 86

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           LV+K+  A    + + R        M             + L     T     G   +  
Sbjct: 87  LVAKLPAAAATLLSLMRGWIAGASQMLYGRSDGSLDWLREGLFSSGTTENLRGGALQLLG 146

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A   G   +     +   ++                  L    +   ++++     + +
Sbjct: 147 LAGGIGSGLVQLLFVVAVALMITVQPVAYRE----IAVLLIPSFYRRRFRRVLIHCGEAL 202

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
            +   G+ I ++  G++      L  V    A  V+  ++ +IP   P   T   + + +
Sbjct: 203 SAWMGGVLISSLCVGVLAAIGLSLLDVKLVAANAVLAGLLNIIPNIGPTLSTIFPMSVAL 262

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             +   A  + L       +    + P ++   + L    T    +  
Sbjct: 263 LDSPLKALAVLLLYVGVQNLESYLITPSVMQHQLDLLPGLTLTAQLLF 310


>gi|307257181|ref|ZP_07538953.1| hypothetical protein appser10_11810 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864343|gb|EFM96254.1| hypothetical protein appser10_11810 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 350

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 107/344 (31%), Gaps = 17/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  +    + ++    + +IL  +        P L +L I     PI      +      
Sbjct: 1   MEHSSSLTKVLVATASIIVILAGIKMAGEIIIPFLLSLFIAIICSPIIKFMTKRHIP--- 57

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A   ++ L ++   FL       ++E  + +             +  +       
Sbjct: 58  --LGLAIGLLLGLIVLIFFFLAGMFNGAIQEFTASIPQYKVLLTERLDTVFALIKAYNLP 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      + + +   F  +  ++F+ R    F  +  +  +  + +I  LF     
Sbjct: 116 --------ISITQEDVLNKFDPSVVMNFVSRLLLSFSSVVSNIFVLFLVVIFMLFESPMA 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            + ++    +L      +  +     V   +       T+++   G+ +     +  V  
Sbjct: 168 KYKLA---LALSPDDDLSNEEYYLNQVLDGVIGYLGVKTVVSALTGISIWILLIVLDVQY 224

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V    +  ++  IP     ++   + +  L+         + +       +    L P 
Sbjct: 225 AVLWATLAFLLNYIPNIGSFLAGIPIVLQALLLNGFSVGIGVLIGVVGINMLFGNVLEPK 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 285 MMGKRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 328


>gi|260843906|ref|YP_003221684.1| putative inner membrane protein [Escherichia coli O103:H2 str.
           12009]
 gi|257759053|dbj|BAI30550.1| predicted inner membrane protein [Escherichia coli O103:H2 str.
           12009]
          Length = 344

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 101/337 (29%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLMA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FAFNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|227515057|ref|ZP_03945106.1| permease [Lactobacillus fermentum ATCC 14931]
 gi|227086579|gb|EEI21891.1| permease [Lactobacillus fermentum ATCC 14931]
          Length = 366

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 104/337 (30%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVSVMCLFIV 76
           +   L  L     P+L   +I +    +         +  +           ++   ++ 
Sbjct: 29  VAGLLKTLLAAAMPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLS 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ +     +   +LV+ V L       V     +        +   + +   +     
Sbjct: 89  IVVVIGVVSSVVAPQLVACVKLLFSGQSKVIPQFINWLENESFLKSLWQQIDLSKINWTK 148

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +++L                   +    + +  I    +       +++Q   L     
Sbjct: 149 VQSYLLNGASGTF-STVMSTASKMVSALTTTVVAIFFSIYLLLFKDRLARQFKLLLTTYL 207

Query: 197 P---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   A   ++  +  +   S  +G    A+  G        +  +P    +G + A+ A+
Sbjct: 208 PGQVARILRVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTAL 267

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   +V I ++   +   A    +         ++   P +VG  I LP +  F
Sbjct: 268 VPIIGALMGASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVF 327

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             ++ G    G+LG+     L A    + K  +   +
Sbjct: 328 VAVMVGGGVSGILGMMFTVPLFAAFYQLLKTDVAKRQ 364


>gi|15679222|ref|NP_276339.1| hypothetical protein MTH1211 [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|8928484|sp|O27279|Y1211_METTH RecName: Full=UPF0118 membrane protein MTH_1211
 gi|2622321|gb|AAB85700.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 334

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 119/353 (33%), Gaps = 21/353 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E +        + +M ++L+S   +   +  +    +  +   P+      +     +
Sbjct: 1   MIERLRGALASASFPVMALLLLSAIVVYPLWTMLFLGAVFAYIVRPVALRINRRI-PYLS 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++A + V+   +  L+F     +     L+S                          
Sbjct: 60  VSIILAMIVVIMPLVGILVFTVDSIINSAPSLLSLAGS--------------------IH 99

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                +L       + +   +  + +     +            L +   + + F+F RD
Sbjct: 100 VPGAGNLQPSAENTLANLRTVLRDILSGSLNYVVAILQSVPMISLQLFVFLSSTFYFARD 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   + +L       + ++++    +V+ S F G  + A+  GL+    + L G P 
Sbjct: 160 GKRLVGYIRTLIPEETRPFMERMASETERVLLSIFYGHFLTALAIGLMAAVGFHLLGYPY 219

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG++T +  +IP   P +                   L L   + L  +D  LRP L
Sbjct: 220 AILLGIMTGLFQLIPVIGPWAAYTPLSIYDFVTGNILRGVLVLIFGLFLSTIDIYLRPKL 279

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            G    +  +    G +GG    G+ G  +GP+++ L     +   M     +
Sbjct: 280 SGKYADIHPMIFLVGFLGGPVVWGVAGFIVGPLVLGLAYAALEAYRMESGGEE 332


>gi|254520402|ref|ZP_05132458.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226914151|gb|EEH99352.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 355

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 119/333 (35%), Gaps = 13/333 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                  P++  + + +   P+ + F+ K +      A +  +    +    + +   Y 
Sbjct: 36  IFAVVIIPIIFGVFLFYILKPLNNIFLKK-KMKGGSAASLTLLIFFFIAAGIMKYFGDYF 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + +   L    +   +    +        G ++  + + K L   Q   I          
Sbjct: 95  IEQFINLKIIFLKIVEEKGNLYGVGEFFKGDIFKLDYYEKFLGDIQKYAI---------- 144

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +           +     I+ +I+ +F+  +D   I + + ++    +      I +
Sbjct: 145 --LLASGLRGIFDKGMQLFSDILLIILIVFYLLKDEEKIKENIVNIFPGKYKYKLYDIVK 202

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
              +V+ S  LG   +A+   L++   Y + G+ S + L  +T ++A IP         +
Sbjct: 203 ESDEVLSSYILGQAKVALSLALMVFIGYKIIGMASPLLLSSVTFVLAFIPFVGFFISMII 262

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              + I         L +   I   +  + + P ++G  + +  +   F +VG    +G 
Sbjct: 263 PYIIAIALGWSMIIKLSILVIIAQTLKGRIIVPLIMGKTMNIHPITDIFLVVGAASLVGP 322

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G F+   + +L  VI+K     ++E  ++   
Sbjct: 323 IGAFVVVPIYSLGKVIFKYFNKEVEEKLKEFKE 355


>gi|163732541|ref|ZP_02139986.1| hypothetical protein RLO149_11905 [Roseobacter litoralis Och 149]
 gi|161393901|gb|EDQ18225.1| hypothetical protein RLO149_11905 [Roseobacter litoralis Och 149]
          Length = 373

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 51/344 (14%), Positives = 111/344 (32%), Gaps = 16/344 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              +   +  +  +     +  L      F P++ AL++G    P+ + F  +       
Sbjct: 10  NRRVDLTRLALVAVGASATVWLLESGTPVFLPLVFALVVGVVFAPLSNFF-DRLGAPPVV 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A+   ++V+ +  + +   +      M  +        Q    +   + ++        
Sbjct: 69  GALAVLITVLSVITLGVFLFYPVVAEFMTRVPFMWTELQQSLSGLKSTMENV-------- 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +          +              +        +   I+  +  L+FF    
Sbjct: 121 --ENVQNQVAITLAPEGSAEMEAPGTVAVPTVAGILSYLPSFAAQIMVFVGILYFFLLTK 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + + S+  HL     +K+ R     +   FL +T I    G ++       G+P+ 
Sbjct: 179 LELYKYIASVTTHLS----EKVLRRAEVEVSRYFLAITAINACFGALVSLMLSAYGMPNA 234

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              G+   ++  +    PISF  V +   LI  +   +    L   +      + + P  
Sbjct: 235 AYWGLGAFLVNYVLYLGPISFAIVLLLGGLIVFDGAMSVLPALTYMLMNMTEGQFVTPTF 294

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  + +  L  F  LV  +   G +G  I   L+  +  I KE
Sbjct: 295 VGKQMSVNPLLIFTSLVFWLWIWGPVGGIIAIPLLVWLRQINKE 338


>gi|226355646|ref|YP_002785386.1| hypothetical protein Deide_07700 [Deinococcus deserti VCD115]
 gi|226317636|gb|ACO45632.1| Conserved hypothetical protein [Deinococcus deserti VCD115]
          Length = 362

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 96/289 (33%), Gaps = 2/289 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L      V  A  + F   P+ +     +        ++  V  + L    ++ +    
Sbjct: 23  LLASVLFTVFMAYGLAFLCNPLLTWLERHRV-RRMIGVLLLLVLGILLVTAVVMTVSSQI 81

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              +  +        +  + +   L  +PG     E  T ++         +   L    
Sbjct: 82  NGMLNNVPELARSLKEILVNLLDRLDRLPGTEGLKETLTTYIDREVQDITQNAGPLAERL 141

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +   P    +     + +   + F++    +F  D   I + +  +    +     ++S 
Sbjct: 142 LSTGPT-VMKTLSNLVGWLGQVGFIVTLAMYFMIDYDGIGRSMLQILPRAWQPTALQLSE 200

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V +   S   G  ++ I   ++  +   L  VP+ +A+G+++ ++ + P    +  + +
Sbjct: 201 DVSESFGSYLRGSLLLLIACVVLATTGLLLLKVPNPLAIGLLSGVINLFPYVGIVLASIL 260

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           +++  I         +     +   ++   L P ++G  ++L       
Sbjct: 261 AMFQAIPMGTTTILLVAGLYFLINQLLGNVLGPLIMGHTMRLSAAAILI 309


>gi|74312074|ref|YP_310493.1| putative transport protein [Shigella sonnei Ss046]
 gi|73855551|gb|AAZ88258.1| putative transport protein [Shigella sonnei Ss046]
          Length = 344

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ I   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLISVPLTIIVKIALEQ 327


>gi|300939745|ref|ZP_07154388.1| putative AI-2 transport protein TqsA [Escherichia coli MS 21-1]
 gi|300455391|gb|EFK18884.1| putative AI-2 transport protein TqsA [Escherichia coli MS 21-1]
          Length = 344

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 113/337 (33%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +      ++++ T+
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            VM + ++                       N+    +P++ + I   + A E   + + 
Sbjct: 72  IVMAMVLLLAYLG---------------SALNELTRTLPQYRNSIMTPLQAIEPLLQRVG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+  L+      + +  +    +R         L ++ ++  L    +      Q +
Sbjct: 117 IDVSVDQLAHYIDPNSAMTLLTNLLTRLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 177 VR------PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|257884562|ref|ZP_05664215.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257887388|ref|ZP_05667041.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257895880|ref|ZP_05675533.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257898506|ref|ZP_05678159.1| conserved hypothetical protein [Enterococcus faecium Com15]
 gi|257820400|gb|EEV47548.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
 gi|257823442|gb|EEV50374.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
 gi|257832445|gb|EEV58866.1| conserved hypothetical protein [Enterococcus faecium Com12]
 gi|257836418|gb|EEV61492.1| conserved hypothetical protein [Enterococcus faecium Com15]
          Length = 350

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 107/354 (30%), Gaps = 17/354 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 10  QRFLANEKIRRLTVLLSVIFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGIL 69

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 70  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDADPVLQYIHNYIERND 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +           +     F     
Sbjct: 130 FFEQLQNGASIALGYLQDIGKLAVAFAMSFILSFFFMIEKQKTIFFSRLFLKSEFSWFFQ 189

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +    D                              IIA+   L+   A    G    +
Sbjct: 190 DLYYFADKFV----------------NTFGLVLEAQFIIALLNTLLTTIALAAFGFHQLL 233

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I+++IP    I     +S     +G I +   + +   +   I    L P L+
Sbjct: 234 SLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILMTILVVHLIESYVLNPKLM 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                LP   TF  L+   R  G+ GL +G  +      + K   +     +E 
Sbjct: 294 SSKTDLPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHSPRET 347


>gi|26247848|ref|NP_753888.1| putative transport protein [Escherichia coli CFT073]
 gi|91210812|ref|YP_540798.1| putative transport protein [Escherichia coli UTI89]
 gi|117623787|ref|YP_852700.1| putative transport protein [Escherichia coli APEC O1]
 gi|218558471|ref|YP_002391384.1| transport protein [Escherichia coli S88]
 gi|227886041|ref|ZP_04003846.1| possible inner membrane protein [Escherichia coli 83972]
 gi|237705541|ref|ZP_04536022.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|300989167|ref|ZP_07178899.1| putative AI-2 transport protein TqsA [Escherichia coli MS 45-1]
 gi|331647088|ref|ZP_08348182.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M605]
 gi|26108251|gb|AAN80453.1|AE016761_28 Hypothetical protein ydgG [Escherichia coli CFT073]
 gi|91072386|gb|ABE07267.1| putative transport protein [Escherichia coli UTI89]
 gi|115512911|gb|ABJ00986.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365240|emb|CAR02961.1| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli S88]
 gi|226900298|gb|EEH86557.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
 gi|227836970|gb|EEJ47436.1| possible inner membrane protein [Escherichia coli 83972]
 gi|281178672|dbj|BAI55002.1| putative transport protein [Escherichia coli SE15]
 gi|294491865|gb|ADE90621.1| YdgG protein [Escherichia coli IHE3034]
 gi|300407365|gb|EFJ90903.1| putative AI-2 transport protein TqsA [Escherichia coli MS 45-1]
 gi|307553571|gb|ADN46346.1| putative permease [Escherichia coli ABU 83972]
 gi|307626913|gb|ADN71217.1| putative transport protein [Escherichia coli UM146]
 gi|315297396|gb|EFU56675.1| putative AI-2 transport protein TqsA [Escherichia coli MS 16-3]
 gi|323187136|gb|EFZ72451.1| hypothetical protein ECRN5871_4607 [Escherichia coli RN587/1]
 gi|323952585|gb|EGB48457.1| TqsA transporter [Escherichia coli H252]
 gi|323956766|gb|EGB52501.1| TqsA transporter [Escherichia coli H263]
 gi|324006946|gb|EGB76165.1| putative AI-2 transport protein TqsA [Escherichia coli MS 57-2]
 gi|330911408|gb|EGH39918.1| putative transport protein [Escherichia coli AA86]
 gi|331043871|gb|EGI16007.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli M605]
          Length = 344

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|126462746|ref|YP_001043860.1| hypothetical protein Rsph17029_1984 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126104410|gb|ABN77088.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 340

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 78/299 (26%), Gaps = 20/299 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                + + ++ G                       +  V V+       L        +
Sbjct: 24  DVLLVIFAGVLFGVFLSAGGGLVQRVTGLQRGAGIALFIVLVLLALTGAFLAFAPAMFEQ 83

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L  ++  A +         S  P                     L      +  +  
Sbjct: 84  ADALARQLPPAFEDLRDRISAYSWGP--------------------TLLSRLAPSRLLSS 123

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
              FAS           +++ ++    +   D    ++ L +L          ++  I  
Sbjct: 124 DGGFASTAVSATFGALGNVVIILFIGLYTAVDPGLYARGLRALLAPPLRPRGDEVLAIAD 183

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             +R    G  I     G++     WL G+P    LG+I A++  IP   P+     ++ 
Sbjct: 184 GTLRGWLGGQIISMTVVGVLTWLGLWLIGIPLAFILGLIAALLTFIPNIGPVLSAVPALL 243

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L +         +              + P +    + LP        +      GL+G
Sbjct: 244 LALPEGAEQVGLVLAVFLTVQTFESYLVTPLIQKERVALPPALIISAQLLMGVLFGLMG 302


>gi|260435867|ref|ZP_05789837.1| hypothetical protein SH8109_1721 [Synechococcus sp. WH 8109]
 gi|260413741|gb|EEX07037.1| hypothetical protein SH8109_1721 [Synechococcus sp. WH 8109]
          Length = 359

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/347 (12%), Positives = 115/347 (33%), Gaps = 4/347 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M  PQ ++    +  I++     +     + +A+++      +      ++        +
Sbjct: 1   MRLPQWLLLTAFIAAIVLLWSLREL-LLLIFAAVVLAMALCTLVGILRERRPMQRPLALL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV-PRWLSDIPGGMWASELW 123
           +  + ++ L       +    + E   L+ K+  A Q  + +   W+  I   ++ ++ +
Sbjct: 60  LCILGLLLLVAGAAGVVVPPFLEEFALLLQKLPEAGQTLVRLGLGWIDSISEAIYGADAF 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY--CLSIIFMIIALFFFYRDG 181
                   +          +             G+        L ++F++          
Sbjct: 120 PDLDQLGLNGPRQLVPDSSSLAAGVGSGLLGLLGLAGNLGNGVLRLLFVVAVALMISIQP 179

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            +       L    +    ++I       + S  +G+ I ++   ++   A  L GV   
Sbjct: 180 QAYRNVGLQLIPSFYRRRGRRILDQCGAALSSWMVGVLISSLAVFVLCSIALTLLGVKLV 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +A  ++  ++ +IP   P   T   + + +    + A  +     +   I    + P ++
Sbjct: 240 LANALLAGLLNVIPNVGPTMSTIFPMAVALLDAPWKAAAVLGAYVVIQNIESYVITPSVM 299

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +KL    T           G LGL +   L  ++ VI +E ++ 
Sbjct: 300 HHQVKLLPGLTLAAQFLFTLLFGPLGLLMALPLAVVLQVIIREVVIH 346


>gi|56808363|ref|ZP_00366119.1| COG0628: Predicted permease [Streptococcus pyogenes M49 591]
          Length = 382

 Score = 96.2 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 110/338 (32%), Gaps = 13/338 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P        +    + S++               +       ++A ++   L    +  
Sbjct: 47  LPFFYGAAGAYIVNIVMSAYEKVYVYIFKDWSHVLKVKRGICLLLAYLTFFILITWIISI 106

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L     +  Q  +        +   +       K      +        
Sbjct: 107 VIPDLITSISTLTKFDTITIQEVVNNLEHNKLLARTIQYIGGDGKLTETIANYSQQLLKQ 166

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T   + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 167 FLTVLTN-ILTSVTVIASAIINLFISFVFSLYVLASKEDLCRQGNTLVDTYTG-KYAKRI 224

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++ +     F+  T+ A+  G +  S  ++  +P    +GV+ A  A+IP     
Sbjct: 225 HYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLPFAGTIGVLVAFTALIPVIGAS 284

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 285 IGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPKVVGGSIGLPAMWVLMAITIGA 344

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G++G+ I   L A +  + K++I   +   +K  S
Sbjct: 345 SLKGIVGMIIAVPLAATLYQVIKDNIQKRQAILKKQVS 382


>gi|193064903|ref|ZP_03045979.1| putative permease, PerM family [Escherichia coli E22]
 gi|194425793|ref|ZP_03058349.1| putative permease, PerM family [Escherichia coli B171]
 gi|192927390|gb|EDV82008.1| putative permease, PerM family [Escherichia coli E22]
 gi|194415848|gb|EDX32114.1| putative permease, PerM family [Escherichia coli B171]
 gi|323163328|gb|EFZ49155.1| hypothetical protein ECE128010_0405 [Escherichia coli E128010]
          Length = 344

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 101/337 (29%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FAFNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|257869328|ref|ZP_05648981.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
 gi|257803492|gb|EEV32314.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
          Length = 351

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 106/335 (31%), Gaps = 18/335 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + RW ++  +   L+ L+     +L   I  +  + +      K   S   L+++  + V
Sbjct: 15  LRRWTVLIFLCGILFLLRSMMTIILLTFIFTYLIYKLVQLIRKKVNVSIKLLSIVLYLIV 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L  + +       + +  +LV  V    Q        L  +   +  S+   K  +  
Sbjct: 75  VALVYLVITKYAPILLNQSAQLVKSVTDFYQKADSNNELLEYLLHLVQTSDYVQKIQNGV 134

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +          N  +        F + F     +   +  +  F         + +  
Sbjct: 135 VVVINYLY-----NFGELALTVLISFLLSFFFMIDNKKTVAFSQLFLQGSASWFFEDVYY 189

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L                     S      +IAI   ++   A  + G P  ++L ++   
Sbjct: 190 LARKFTR------------AFGSVIETQLLIAIVNTVITVLALAVMGFPQLLSLAMMIFF 237

Query: 251 MAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++IP    I     ++      G + +   + L       +    L P L+    ++P 
Sbjct: 238 LSLIPVAGVIISCIPLTFIAYTIGGLNDVVYVLLIIIFVHALESYVLNPRLMSHKTEIPM 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             TF  L  G    G+ GL +G  L   +  + K 
Sbjct: 298 FYTFIVLYLGEHLFGIWGLIVGIPLFTFLLDLMKI 332


>gi|312111198|ref|YP_003989514.1| hypothetical protein GY4MC1_2166 [Geobacillus sp. Y4.1MC1]
 gi|311216299|gb|ADP74903.1| protein of unknown function UPF0118 [Geobacillus sp. Y4.1MC1]
          Length = 342

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 99/331 (29%), Gaps = 19/331 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +I  +++  LY ++     +L   I  F    +      +   +   + ++  V+V+ 
Sbjct: 16  RIVIFSVLIFILYLVRSILNIILLTFIFSFLMNGLVDFISKRIRINRKIIVLLLYVAVVS 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++      + E+ +L+ ++               +I       +L    ++   +
Sbjct: 76  ILVYGVVKYLPVVINEISQLIKQLTEFYSKPQD------NIVFNYIIEQLKHYEITTYLN 129

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +       ++      +      +           +     F Y        +L+  G
Sbjct: 130 FGMTYLIKYFSDIGSVGLQILLALILSLFFLLEKERIISFTNRFKYSKISPFYNELEYFG 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                                      IIA     +  +  W+   P    LG++   + 
Sbjct: 190 RKFVR------------TFGKVIEAQFIIATVNMAITVAGLWIMDFPQLFGLGILIFFLG 237

Query: 253 MIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP    I     +       G I     + +  A+   +    L P L+     LP   
Sbjct: 238 LIPVAGVIISLFPLCFIAYSIGGIMKVVYVLIMIAVIHALEAYVLNPKLMSSKTNLPVFY 297

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           TF  L+      G+ GL +G  +   I  + 
Sbjct: 298 TFIVLIFSEHFFGVWGLILGIPVFVFILDVL 328


>gi|325527793|gb|EGD05065.1| hypothetical protein B1M_08312 [Burkholderia sp. TJI49]
          Length = 314

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 134/301 (44%), Gaps = 5/301 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLA 63
              +     +   ++L++L+ ++ F   +  A +I    WP+   F          T +A
Sbjct: 17  RAQRIARAVLYTALLLLALWVIRAFIPAIAWACVIAIAMWPLLKRFESHRLVRNRPTIVA 76

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + TV++  L ++P+       + +  ++   +     +GIP+P  +S +P G      W
Sbjct: 77  TVITVAISLLVVLPVALALTQAIAQAHDMRVWLRTIQDNGIPLPDVVSRLPYGSTQIADW 136

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +         + + + +     +    F   FG       L   FM++ LF   R G  
Sbjct: 137 WQANLGHP---LHAASAMHGVNGEKFIAFGRLFGTKLAHALLEFGFMLVTLFVILRAGHK 193

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +S  L       F A   ++   +   +  T  G+ ++ +GEG +LG AY LAGVP    
Sbjct: 194 LSGALLQGARRAFGADGAQLIERMVGAVNGTVTGLVVVGLGEGALLGIAYALAGVPHAAL 253

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LG++TA+ AM+P  AP+ F   +++L ++G    A  + + G + +F+ +  +RP L+GG
Sbjct: 254 LGLVTAVAAMLPFCAPVVFCGAALWLFVQGATTWAVVVAVTGFVVVFVAEHFVRPVLIGG 313

Query: 304 P 304
            
Sbjct: 314 A 314


>gi|325281691|ref|YP_004254233.1| hypothetical protein Odosp_3090 [Odoribacter splanchnicus DSM
           20712]
 gi|324313500|gb|ADY34053.1| protein of unknown function UPF0118 [Odoribacter splanchnicus DSM
           20712]
          Length = 368

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/360 (13%), Positives = 121/360 (33%), Gaps = 20/360 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTF 61
              + ++  + +   +   ++       +L A +I F   PI       K          
Sbjct: 3   SVTKYVLGIVALAGAIFFSWYFFSVIVYILVAAVISFIGRPIIDLLGRVKIRGYRLPDGL 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  + +  LFI+    +    + E + L +  V      + +P     I       +
Sbjct: 63  KAGITVICLWGLFILFFSTIIPLAIREFQSLGNVSVSNIVSELEIP-----IEDAGHFMK 117

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            +            +++   K   +  +  +         D  +++  +   LFFF +D 
Sbjct: 118 HYGLMDEDQDVDAYVTDLLSKVFNVGQLKTWFGTVAGTMTDIFVALFSITFILFFFLKDS 177

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS- 240
              S  + ++    F    +     + K++   F+G+ +  +G   +      + G+   
Sbjct: 178 RLFSGMVMAVLPSRFEEQARNALDSIQKLLVRYFVGLLLEVLGVMALNTIGLTIVGLGFS 237

Query: 241 -HVALGVITAIMAMIPGGAPISFTAVSIYL---------LIKGNIFNATCLFLWGAIELF 290
             V +G++T ++ +IP   P+      + +              +     + +   +   
Sbjct: 238 NAVVIGLVTGVLNVIPYIGPMIGVFFGLAVGVVLNLGLDFYDQMLPLLIYMTIAMLLTQL 297

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I +   +PF+ G  +    L  F  ++      G+LG+ +      ++ V+ KE     K
Sbjct: 298 IDNVVFQPFIYGSSVHAHPLEIFLVILMAGSMAGILGMILAIPSYTVLRVVLKEFFNKYK 357


>gi|254673006|emb|CBA07533.1| permease [Neisseria meningitidis alpha275]
          Length = 253

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/239 (17%), Positives = 92/239 (38%), Gaps = 2/239 (0%)

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +P        + +         + + T   +N +        R G   +    +++ + +
Sbjct: 6   LPWLKNTIGGYVEIDQASIIAWLQAHTGELSNALKAWFPVLMRQGGNIVSSIGNLLLLPL 65

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            L++F  D    S  +  L    F   + +I+  + +V+     G  ++ +  GLV G  
Sbjct: 66  LLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLRGQLLVMLIMGLVYGLG 125

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELF 290
             L G+ S  A+G++  I+  +P     +   ++        G+      ++   A+  F
Sbjct: 126 LVLVGLDSGFAIGMLAGILVFVPYLGAFTGLLLATVAALLQFGSWNGILSVWAVFAVGQF 185

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +    + P +VG  I L      F L+   + MG +G+  G  L A+  V+ +E +   
Sbjct: 186 LESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPLAAVTLVLLREGVQKY 244


>gi|170683134|ref|YP_001743653.1| putative transport protein [Escherichia coli SMS-3-5]
 gi|170520852|gb|ACB19030.1| putative permease, PerM family [Escherichia coli SMS-3-5]
          Length = 344

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+           +        +I + +
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMVRPVEGMAAIQRAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV  +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|322384232|ref|ZP_08057942.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151124|gb|EFX44441.1| permease-like protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 374

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 7/322 (2%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
              AP+  + +I     P       K          I+T S + L +  +  L  +   +
Sbjct: 37  SIAAPLFWSFVIFLMIEPFARFLNRK-GLRKGLATTISTFSFIILILAFVTVLGLFLTNQ 95

Query: 89  MKELVSKVVLANQHGIPVPR------WLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +  L+ K+                              + + +  ++         T   
Sbjct: 96  VASLIEKIPGYANIIQHQIAGTTTYIQKKMQNLPPDTLDKFQEFANNLTETATKFTTAFL 155

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +DF       F   F    ++ +  II  FF   +  S  +             +  
Sbjct: 156 KGILDFFKGGLLSFFTSFSGIMVNFVVGIILAFFLSLEIESWKKGARRKISPSLLNTFTF 215

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           +   V K +        I+     +++  +  +  V + ++L ++  ++ ++P     +F
Sbjct: 216 LKENVGKGVSGYIKSQLILVSITFVIVLVSLIILRVENALSLSIMAGVIDVLPLLGISAF 275

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               I  L   N +              +V + + P + G  + +     F  ++  +  
Sbjct: 276 FIPWIIYLFIINNYPLAIALSIVLGITLLVRQIMEPKITGQALGVSPFTMFAFMIVSLSV 335

Query: 323 MGLLGLFIGPVLMALIAVIWKE 344
            G+ G  I PVL+  +  ++KE
Sbjct: 336 FGVFGFIISPVLLITLKALYKE 357


>gi|260662013|ref|ZP_05862909.1| EpsX protein [Lactobacillus fermentum 28-3-CHN]
 gi|260553396|gb|EEX26288.1| EpsX protein [Lactobacillus fermentum 28-3-CHN]
          Length = 366

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 104/337 (30%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVSVMCLFIV 76
           +   L  L     P+L   +I +    +         +  +           ++   ++ 
Sbjct: 29  VAGLLKTLLAAAMPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLS 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ +     +   +LV+ V L       V     +        +   + +   +     
Sbjct: 89  IVVVIGVVSSVVAPQLVTCVKLLFSGQSKVIPQFINWLENESFLKSLWQQIDLSKINWTK 148

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +++L                   +    + +  I    +       +++Q   L     
Sbjct: 149 VQSYLLNGASGTF-STVMSTASKVVSALTTTVVAIFFSIYLLLFKDRLARQFKLLLTTYL 207

Query: 197 P---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   A   ++  +  +   S  +G    A+  G        +  +P    +G + A+ A+
Sbjct: 208 PGQVARILRVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTAL 267

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   +V I ++   +   A    +         ++   P +VG  I LP +  F
Sbjct: 268 VPIIGALMGASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVF 327

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             ++ G    G+LG+     L A    + K  +   +
Sbjct: 328 VAVMVGGGVSGILGMMFTVPLFAAFYQLLKTDVAKRQ 364


>gi|184155466|ref|YP_001843806.1| putative transport protein [Lactobacillus fermentum IFO 3956]
 gi|183226810|dbj|BAG27326.1| putative transport protein [Lactobacillus fermentum IFO 3956]
          Length = 366

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 104/337 (30%), Gaps = 7/337 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSS---FISKKEESSTFLAVIATVSVMCLFIV 76
           +   L  L     P+L   +I +    +         +  +           ++   ++ 
Sbjct: 29  VAGLLKTLLAAAMPLLIGCVIAYIVNLLMVRYEGLYHRVFKGQRAQRFARVTALCLAYLS 88

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ +     +   +LV+ V L       V     +        +   + +   +     
Sbjct: 89  IVVVIGVVSSVVAPQLVACVKLLFSGQSKVIPQFINWLENESFLKSLWQQIDLSKINWTK 148

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            +++L                   +    + +  I    +       +++Q   L     
Sbjct: 149 VQSYLLNGASGSF-STVMSTASKVVSALTTTVVAIFFSIYLLLFKDRLARQFKLLLTTYL 207

Query: 197 P---AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           P   A   ++  +  +   S  +G    A+  G        +  +P    +G + A+ A+
Sbjct: 208 PGQVARILRVLTVFDQSFSSYIVGQVKDAVVLGCSCTVLMLILQLPYAPMVGAVMAVTAL 267

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   +V I ++   +   A    +         ++   P +VG  I LP +  F
Sbjct: 268 VPIIGALMGASVGIIVIFAVSPVKALIFLVMILALQEFDNRVTYPLIVGKSIGLPSVWVF 327

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             ++ G    G+LG+     L A    + K  +   +
Sbjct: 328 VAVMVGGGVSGILGMMFTVPLFAAFYQLLKTDVAKRQ 364


>gi|260905264|ref|ZP_05913586.1| predicted permease [Brevibacterium linens BL2]
          Length = 436

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 97/318 (30%), Gaps = 24/318 (7%)

Query: 9   QGIMRWMIMFIILVSLYF---LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + ++  + +  +  +L F   L+   APV  AL      +P+      K +      A I
Sbjct: 37  RALVIALTIAGLAYALMFFKGLQDIVAPVFLALNFYIVVYPLQKYLT-KLKVPRAIGATI 95

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + + V+ +         +     +  + S              +LSDI       +   +
Sbjct: 96  SVLLVLVMIFGFFGLTAWSVAELVLLIPSYGEQLVATYQSALSFLSDIGVTSSVLQQQFQ 155

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    +  +       + +  +                      + +  F+    S+ 
Sbjct: 156 QFNVRSLIDAVYPLLTNVSLVAGLLT-------------------TVVMAVFFVAMDSMG 196

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L                   +R  ++  T+  +   ++   A  +  VP     G
Sbjct: 197 IDRRMLMLLDVKPSLAASLGGFASGVRRYWVVATVFGLIVAVLDVIALAIIDVPLIWVWG 256

Query: 246 VITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+  +   IP    +      ++  L+     +A  + +  ++  F++   ++P   G  
Sbjct: 257 VLAFLTNYIPNIGFVIGLIPPALLALVDSGWQSALWVVIAYSVLNFVIQSIIQPKFTGES 316

Query: 305 IKLPFLPTFFGLVGGVRT 322
           + +  L +F  L+  V  
Sbjct: 317 VGVTPLVSFLSLLFWVWV 334


>gi|304407575|ref|ZP_07389227.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
 gi|304343526|gb|EFM09368.1| protein of unknown function UPF0118 [Paenibacillus curdlanolyticus
           YK9]
          Length = 372

 Score = 96.2 bits (238), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 96/319 (30%), Gaps = 3/319 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +++I+ +   L     PV  +  I     P      +K     +  + I+ + 
Sbjct: 15  IALIALTVYLIMFAFSHLYKIATPVFLSFFIYIFIEPPARWM-NKLGIKKSIASAISVLL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + +   L   Y    +   L+ K+ +  Q         SD        +     L  
Sbjct: 74  FTLVILSVFLGTGYIIADQANGLIQKLPVYQQIMKDQVALHSDWIAAK--MDTLPPDLLG 131

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +   T    +         S +   F  +  +    II  +F   +     +   
Sbjct: 132 QFDKVVDYVTSKGQHLATQFLLTISSYLTSFSAFIFNFAIGIILAYFLSVEIKDWKRVAA 191

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
               + F   +  +   V K I +       +     +V+  +  L GV +   + V++A
Sbjct: 192 DKTPNTFKKAFSFLRDNVFKGIGAYLKSQLKLISITFIVIFVSLLLLGVDNAFTISVVSA 251

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  ++P     +     I  L                + + +  + L P + G  + +  
Sbjct: 252 IFDVLPLLGVGTVFVPWIIYLFIVGKTTLAIWVSALFLTVVLARQILEPKITGDTLGVSA 311

Query: 310 LPTFFGLVGGVRTMGLLGL 328
                 ++  +   G+ G+
Sbjct: 312 FTMLAFMIISLSLFGIAGV 330


>gi|116328176|ref|YP_797896.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116330900|ref|YP_800618.1| permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
 gi|116120920|gb|ABJ78963.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis L550]
 gi|116124589|gb|ABJ75860.1| Permease [Leptospira borgpetersenii serovar Hardjo-bovis JB197]
          Length = 375

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 134/352 (38%), Gaps = 11/352 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIATV 68
                + +F I +     + +    L ALI+   +   +        E     +  I   
Sbjct: 17  IFFSVLFVFTIGIFFLVFRPYLYSSLMALILYLATRRPHKLLKEYLGEKFQWLVPWIMIS 76

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V  + +VP  F+    + E   ++ K+ ++      +   ++      + ++     + 
Sbjct: 77  LVSMIVLVPSYFVIRTLIGETLSILFKLRISLSEDKIIETLMNFAMLTDFITDNEFFWVK 136

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD-------YCLSIIFMIIALFFFYRDG 181
            P+     +E ++    +D I    S      L          +++ F ++ LFF Y+DG
Sbjct: 137 VPEIYGEFAENYVDILNLDSIYGILSNASSFILGNIELPTGILMNLFFALLVLFFLYQDG 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + +            +++ R V   +++   G  II+I +G  +     +AG+ S 
Sbjct: 197 KKVERFILDNLPFS-KQLEEQVGRKVASAVQTVIRGNLIISILQGAAVYILLLVAGISSP 255

Query: 242 VALGVITAIMAMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                + +  ++IP               L ++ N   A             ++  ++P 
Sbjct: 256 FLYASLASFFSIIPVVGTSVVWLPIGLYILFLENNPMMAFFFMGSALFFYLALENFIKPR 315

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           ++   ++   L  F  L+GG++  G++GL +GPV++ L+ ++W    +  KE
Sbjct: 316 MLDKKLQAHPLLIFLSLIGGIKEFGIMGLVLGPVVVTLVVILWDFWKLYRKE 367


>gi|158321393|ref|YP_001513900.1| sporulation integral membrane protein YtvI [Alkaliphilus oremlandii
           OhILAs]
 gi|158141592|gb|ABW19904.1| Sporulation integral membrane protein YtvI [Alkaliphilus oremlandii
           OhILAs]
          Length = 359

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/336 (14%), Positives = 113/336 (33%), Gaps = 3/336 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             I   +I+ +I ++   + G+  P +    I +   P+        +  +  +++    
Sbjct: 14  NTIYTAIIIGLIYLAFKHVLGWVMPFIIGFFIAYLLKPMADFIERSTKIKNKSVSIFVIS 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK--- 125
               + I    FL       + E ++         I      ++     + + L  +   
Sbjct: 74  FFYVVVIGVASFLVINLWRLIYEFINLFPTLYIDSIEPMIAAANDWIISFINNLSPEVAA 133

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +S      +   T + ++    +    +        Y ++++F II       D  ++S
Sbjct: 134 LISDVFDNVLSMVTQVVSSLSKIVLFSITGIAQKIPIYFITLLFSIICSVLITMDYDNVS 193

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L+        +    + +I+   I        I+     + +   + + G+   + + 
Sbjct: 194 AFLNRQIPKSIRSILSDVKKILVDTIFKMAKAYFILLFIAFIEMCIGFMILGIDHAIPIA 253

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I AI+ +IP               I           L   +  +I+  TL P +VG  I
Sbjct: 254 SIIAILDIIPLIGIGGILIPWGIYEIIIGQSTVGIGLLIIYLISYILRNTLEPKIVGKQI 313

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  L TF  +  G +T G +G    P++  +I  +
Sbjct: 314 GLNSLVTFVSMFVGFKTFGFIGFMTAPIVAIIIKQL 349


>gi|331683106|ref|ZP_08383707.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H299]
 gi|331079321|gb|EGI50518.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H299]
          Length = 344

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLKAIEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|111020752|ref|YP_703724.1| hypothetical protein RHA1_ro03766 [Rhodococcus jostii RHA1]
 gi|110820282|gb|ABG95566.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
          Length = 377

 Score = 96.2 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/334 (14%), Positives = 101/334 (30%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++    + + L +L        PV  ALI+     PI ++   +          +  + 
Sbjct: 22  VLVGGASLVVALGALKAFADIVGPVFLALILTVAVQPIPNALRRRGWPG-----WLVMIV 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +      LLFL    +  + +L + +   +     +   +                L  
Sbjct: 77  AILAVWGILLFLVLALVFSIAQLSTLLPEYSDKFDEMVGNVQ-------------SGLQS 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   +  +    +  +           L    +++F+   L F   D  + + +L+
Sbjct: 124 HGIGSDQVQQMIAGIDMSKVTDLVGDILAGTLAVFSNLLFVFALLLFMSADAATYTWRLN 183

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L  +                        T   +   ++   A WL G+P  +  G+++ 
Sbjct: 184 TL--NRLRPDLASAFTNFAAGTLIYLFVSTFFGLIVAVLDARALWLMGIPLPILWGLLSF 241

Query: 250 IMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    I        L +  G       + +  +    ++   ++P  VG  + L 
Sbjct: 242 ITNYIPNIGFIIGLIPPALLALLDGGPVLMLWVIVVYSALNVLIQSVIQPKFVGDAVGLT 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   L      + 
Sbjct: 302 VTFTFLSLVLWSWVLGPLGAILAIPLTPFAEAML 335


>gi|226311109|ref|YP_002771003.1| hypothetical protein BBR47_15220 [Brevibacillus brevis NBRC 100599]
 gi|226094057|dbj|BAH42499.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 343

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 109/332 (32%), Gaps = 2/332 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I + +I+ ++L    FL  +  P L AL+      P+    I +   +     + A   
Sbjct: 2   TIRKMIILLLVLAVGLFLLPYSIPFLLALLTAILVEPLVLFLIKRLRTNRMSAVITAFFL 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +  F + L ++    +++  +L  ++   +QH   +           +AS         
Sbjct: 62  FLISFGIVLYWIGTQIVIQGIDLAQRLPAYSQHIFELVESYLMSWETYYASLPAETVSEI 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 L    L +     + +       I   + +S I  ++ALF    D   +     
Sbjct: 122 QSVFAGLKSWALTS--ASTVAKGILGVAAIIPGFLISTIIYLVALFLISLDLPKLRAGFM 179

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +         + +   + +          I+++    +      +  V     + ++  
Sbjct: 180 RMFTVSAREKVEVVISQLNRATLGFLRAQIILSLMTFALSLLGLLILQVKYAAVISLMIV 239

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + ++P     SF              +     +   + + +V + + P ++   + +  
Sbjct: 240 FVDILPILGTGSFLVPWAIYTFLMGNSSLAIGLIVIFLVITVVRRIIEPKILASNLGISA 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L     +  G + +G  GL +GP L+ +   +
Sbjct: 300 LAALVSMFLGFQVLGFFGLILGPALVIIYEAL 331


>gi|259910131|ref|YP_002650487.1| Putative inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|224965753|emb|CAX57285.1| Putative inner membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283480230|emb|CAY76146.1| putative AI-2E family transporter [Erwinia pyrifoliae DSM 12163]
          Length = 345

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 107/337 (31%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++   + +IL  +        P L AL       P+ S  I +          +  
Sbjct: 11  QNILLKLATLVVILAGIKLSAEIVVPFLLALFFAIVINPLVSVLIRR-GVRRGMAITLVM 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ +  + ++ +                               +           +HL
Sbjct: 70  VVMLLVLTLLVIMVAGSL------------------QAFSEVYPQLQAQSAQKLSMLQHL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    L I S +  +      I   A+     F      ++ +I+ + F   +   +  +
Sbjct: 112 AARFHLNISSSSLAQRLDPGAIMDVATTMLRQFSGAMTQLVLVIMTVIFMLFEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      + P           K +        +I++  G+++  A    G+   +  G++
Sbjct: 172 LRYAL--VNPQIHIAGLHKALKGVTHYLALKALISLVTGVLVWLALLALGIKFALLWGIV 229

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  IP   P I+     +  L+      A  +         ++   L P L+G  + 
Sbjct: 230 AFVLNFIPNIGPVIAGIPPVLQALLLNTPLEAGLVAALFVSIHMLLGNLLEPRLLGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 290 LSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|108763169|ref|YP_628600.1| hypothetical protein MXAN_0325 [Myxococcus xanthus DK 1622]
 gi|108467049|gb|ABF92234.1| putative membrane protein [Myxococcus xanthus DK 1622]
          Length = 386

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 76/291 (26%), Gaps = 14/291 (4%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
            A I+        +    +          +   +++ +     L +      ++  LV +
Sbjct: 70  IATILALALEHGVARLE-RGRLPRLAAIALVMTALLVVVAALALLVIPAAADQLDALVRQ 128

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
                +                                    E          +P    R
Sbjct: 129 WPQLMEELRS------------SRPIQVLSDRLQALGWARRLEEATPRLATGALPTLLIR 176

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                +   +S + +   + F    G  + ++  +L        + ++   V        
Sbjct: 177 AIGGVVGVVISALTVFFLVVFMLTFGGDLIRRGLALVGPEHRMRYVRVLHNVYSATGGYL 236

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
            G+ +I      +      L G+P  + LG+ +   +++P   P+    V   L      
Sbjct: 237 SGLALICTINATLTTVTLALLGLPYFLPLGIASGFSSLVPYVGPLIAGGVITLLTWATQG 296

Query: 276 FNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             A  + L   +    +    L P +    + +  L     ++      G+
Sbjct: 297 IWAAAVALAYFLLYGPLEGNVLAPLVFRRTVHVNPLLVLLAVLFCAELAGI 347


>gi|261415247|ref|YP_003248930.1| protein of unknown function UPF0118 [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371703|gb|ACX74448.1| protein of unknown function UPF0118 [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326974|gb|ADL26175.1| putative membrane protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 375

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 61/339 (17%), Positives = 117/339 (34%), Gaps = 11/339 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           +L G   P  +A +I +   P+      K         V+  +    +    + F     
Sbjct: 29  YLSGVLFPFFAAFLIAYIMDPLVCRLQIKFRY-RVIAVVVVLLGAAIIIGGCMYFFVPKV 87

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS----ELWTKHLSHPQSLKILSETFL 141
           + E++ L + +           R ++ +P   WAS      W       +SL + S    
Sbjct: 88  VHEVQYLGTLISRIFTDSTWSDRIMTFLPADTWASVKTMISWNSIAEAMESLDVWSVVQT 147

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            ++ I                   S   + + L F   D   I + +  L    +     
Sbjct: 148 VSDRILPGAWDILSKTSTIFMGVSSAAVVFMYLVFIMLDMHKIRKGIRRLIPRRYRREAG 207

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG---- 257
           + +    K + + F   +++A   G++    + + G+P  VA G+ +  + MIP      
Sbjct: 208 EFASSTDKFMGTYFRAQSMVAFTVGVLYAIGFSVMGLPMGVAFGLFSGALNMIPYMQLTT 267

Query: 258 APISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
            P++     +Y L KG  F   A  +     +   I D  L P +VG  + LP +     
Sbjct: 268 IPLALLLAVVYALDKGMPFWEVAIIILAIYLVVQIIQDFFLVPHIVGKSMNLPPVGILLS 327

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           L    + +G LGL +      +  V  ++      +  E
Sbjct: 328 LSIWGKLLGFLGLLVAIPFTCICLVYVEKLRNKADQYVE 366


>gi|90962471|ref|YP_536387.1| hypothetical protein LSL_1500 [Lactobacillus salivarius UCC118]
 gi|90821665|gb|ABE00304.1| Conserved hypothetical protein [Lactobacillus salivarius UCC118]
          Length = 351

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 117/355 (32%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + + R+ ++  ++  LY  +     +L   I  F    +  +   K +  S  +
Sbjct: 7   QRFLGNERLRRFTVLLFLVGVLYLARSMMNLILLTFIFSFLVISLNDAIRKKIDIPSKLI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++    + +       + + + LV+ +V    H       + ++     +   
Sbjct: 67  VIIVYLLMIGGIYLAITIYLPKLVTQTENLVNYIVKFYNHPPKGTNDVINMVTQYISQSD 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K +    S+ +     + T G+ FI      F                   FF  D  
Sbjct: 127 IMKQMRGGMSIIVKYLANIGTMGMTFIMALLLSF-------------------FFTIDKD 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG---MTIIAIGEGLVLGSAYWLAGVP 239
            + +   S  +  +  ++  +       + S  +      IIA+    +  +      +P
Sbjct: 168 DLFKFSKSFLKGPYSWFFNDVYYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMP 227

Query: 240 SHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              +L ++   M+MIP    I     + +     G +     + +   +   +    L P
Sbjct: 228 QLFSLALLIFFMSMIPVAGVIISAIPMMLIGYTVGGVRYIIYIIIMLCVVHALEAYVLNP 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+    +LP   TF  L       G+ GL +G  +   +  I       I+  +
Sbjct: 288 KLMSSRTELPIFYTFVVLYVSEHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 342


>gi|77920680|ref|YP_358495.1| putative transport protein [Pelobacter carbinolicus DSM 2380]
 gi|77546763|gb|ABA90325.1| putative transport protein [Pelobacter carbinolicus DSM 2380]
          Length = 350

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 99/341 (29%), Gaps = 23/341 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   Q  +    + I+   L   K    P L A  I   S         +        
Sbjct: 4   RPLSVSQVFITLAALVIVAAGLNAGKVILVPFLLAGFIAILSASPMFWLQRR-----GLP 58

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + +A + V+   ++  L L       +      + L           L+        S  
Sbjct: 59  SWLALLVVILTVVLAGLMLAGLIGSSVSAFSENLPLYESRLRQYADVLTTWLERKNISIS 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                                       +  +       +   +   +++ + F   +  
Sbjct: 119 GQVLTEIFD--------------PGAAMKLVASLFNALTNVLANGFLVLMTVIFMLLEAS 164

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L ++     P+          + ++      TII++  G ++     + GV   +
Sbjct: 165 GMPGKLRAILG---PSKSLSGFDHFVQNVQHYMAIKTIISLITGALITLWLLVLGVDFPL 221

Query: 243 ALGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             GV+  ++  +P    I       +  L++  +  A  + +   +   ++   + P  +
Sbjct: 222 LWGVLAFLLNYVPNIGSIIAAGPAVLLALVQLGLLRALLVGVGFLVVNLVMGSAVEPRFM 281

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           G  + L  L  F  L+     +G +G+ +   L     +  
Sbjct: 282 GRGLGLSPLVVFLSLLFWGWLLGPVGMLLSVPLTMTAKIAL 322


>gi|150009736|ref|YP_001304479.1| hypothetical protein BDI_3151 [Parabacteroides distasonis ATCC
           8503]
 gi|255012973|ref|ZP_05285099.1| hypothetical protein B2_03653 [Bacteroides sp. 2_1_7]
 gi|149938160|gb|ABR44857.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
           8503]
          Length = 337

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/339 (14%), Positives = 130/339 (38%), Gaps = 20/339 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + ++  + +  F   +L A  I             K      F A++     +  F
Sbjct: 18  IILGLGVILFFKITPFLGGILGAFTIYILLRGQMFHLTEKLNMRPAFAALLLLGETILCF 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++P+    +  + + + +     +    G  +   + +                  ++  
Sbjct: 78  LIPITLAIWLVINKTQNINLDPTVLLNTGQHIADLVQE------------------KTGF 119

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            + +          +P+           + ++++ +I  L+F    G  +   L +L   
Sbjct: 120 DVLDRGNLLKVASILPQIGQFLVGSISSFAVNVVVLIFILYFMLIGGRKMENYLYTLFPF 179

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++   +  +++S  +G+ ++A+ +G+V    Y++   P  +  G +T I  +I
Sbjct: 180 S-DQNKDEVLNEINMIVKSNAIGIPLLAVIQGIVAVIGYFIFQTPDPLLFGFLTCIATII 238

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +  ++ Y+ + G+  +A  L ++  + +  VD  +R  L      +  L T 
Sbjct: 239 PIVGTALVWVPLAAYMALNGDWVHALGLAIYALLVITNVDNLIRFILQKKLADIHPLITV 298

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           FG+V G+   G +G+  GP+L++L  +       +  + 
Sbjct: 299 FGVVIGLSLFGFMGIIFGPLLLSLFLLCIDIFKKSYLDK 337


>gi|149181715|ref|ZP_01860207.1| hypothetical protein BSG1_18170 [Bacillus sp. SG-1]
 gi|148850563|gb|EDL64721.1| hypothetical protein BSG1_18170 [Bacillus sp. SG-1]
          Length = 331

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 103/315 (32%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y++     P+++A++      P       + +       +I  +  M    +   F+  
Sbjct: 2   IYYILPVSIPLITAIVTALLLDPAVKMLERRFKIKRKLAVLIVFIIFMLAIGLLSYFVIT 61

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + E  +LV  +         +                          ++    +F  +
Sbjct: 62  KVVGEGVKLVEDMPAYINQLSDIWLSYEKQLTNAAKDLPIEIVTQTSNEVQDFLNSFKNS 121

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                     S F     +Y +S +  +IALF F  D   I Q L S            +
Sbjct: 122 LRDYLDIEKISAFLAYIPNYLVSFLVYLIALFMFMLDLPRIKQTLFSHLTEKTAEKVNFM 181

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +  +  VI   F    +++I   +              V + +I  ++  IP    I   
Sbjct: 182 TSRLSYVIFGFFKAQFLVSIIIFVTSLIGLLFIAPEVAVVMSIIIWVIDFIPLIGSIVVL 241

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                  +              A  L I+ +T+ P ++G  I L  L T   +  G++ +
Sbjct: 242 FPWAMYHLLSGNLTLGTELAVLAAVLLIIRRTVEPKVMGSHIGLSPLATLIAMYLGLKLL 301

Query: 324 GLLGLFIGPVLMALI 338
           G+LG  +GP+++ + 
Sbjct: 302 GVLGFILGPLILIIF 316


>gi|323357875|ref|YP_004224271.1| permease [Microbacterium testaceum StLB037]
 gi|323274246|dbj|BAJ74391.1| predicted permease [Microbacterium testaceum StLB037]
          Length = 408

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 111/340 (32%), Gaps = 10/340 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   ++ ++L  L      +  AL +     P+    + +   S  +  VI    +  + 
Sbjct: 79  LTAILLGLALSSLSTVLIYIAIALFVALALDPLVRMLVRR-GISRAWSIVIVFGGLAVIL 137

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              L  L    + ++++ V  +       I                       S    LK
Sbjct: 138 AAALWLLIPPVVRQVEQFVGDIPTFVNDLID---------SDAVRWVESNFGDSLAGVLK 188

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +         I  I     + G+    +    I +++   +F      +   L  L   
Sbjct: 189 EVQSFVTNPTNIAAIGGGLLQVGITIGTFISGAIIVLVLSLYFLAALPKMKNSLVRLTPA 248

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
              A    ++  +   +     GM ++A+   +       +   P    L  +   + +I
Sbjct: 249 RSRATVSDMTGQITDSVGGYLAGMVVLALCNAVFAFIVLTILQQPFAALLAALAFGITLI 308

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    + F AV+    +  +  +     +   + + I    L P ++   I +P      
Sbjct: 309 PLVGSVLFWAVATVFTLIVSPTSGLIFAIAYLVYMQIEAYLLTPRVMNRTISVPGSLVVI 368

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           G + G   +GLLG  +   + A + +I K+ ++  ++ K+
Sbjct: 369 GALVGGTLLGLLGALVAIPVTASVLLIIKQIVIPRQDAKK 408


>gi|32035189|ref|ZP_00135223.1| COG0628: Predicted permease [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126208598|ref|YP_001053823.1| membrane protein [Actinobacillus pleuropneumoniae L20]
 gi|165976554|ref|YP_001652147.1| hypothetical protein APJL_1147 [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190150455|ref|YP_001968980.1| membrane protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|303250123|ref|ZP_07336325.1| hypothetical protein APP6_1539 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|303253297|ref|ZP_07339446.1| hypothetical protein APP2_0608 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307246043|ref|ZP_07528125.1| hypothetical protein appser1_12460 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307248151|ref|ZP_07530179.1| hypothetical protein appser2_11320 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307252766|ref|ZP_07534657.1| hypothetical protein appser6_12800 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307255025|ref|ZP_07536843.1| hypothetical protein appser9_12590 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259461|ref|ZP_07541186.1| hypothetical protein appser11_12580 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261610|ref|ZP_07543278.1| hypothetical protein appser12_11710 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|307263799|ref|ZP_07545405.1| hypothetical protein appser13_12100 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|126097390|gb|ABN74218.1| membrane protein [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
 gi|165876655|gb|ABY69703.1| putative membrane protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189915586|gb|ACE61838.1| membrane protein [Actinobacillus pleuropneumoniae serovar 7 str.
           AP76]
 gi|302647979|gb|EFL78186.1| hypothetical protein APP2_0608 [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|302651186|gb|EFL81340.1| hypothetical protein APP6_1539 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306852978|gb|EFM85201.1| hypothetical protein appser1_12460 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306855328|gb|EFM87503.1| hypothetical protein appser2_11320 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306859798|gb|EFM91820.1| hypothetical protein appser6_12800 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306861898|gb|EFM93874.1| hypothetical protein appser9_12590 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866397|gb|EFM98260.1| hypothetical protein appser11_12580 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868733|gb|EFN00542.1| hypothetical protein appser12_11710 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306870920|gb|EFN02658.1| hypothetical protein appser13_12100 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 350

 Score = 95.8 bits (237), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 107/344 (31%), Gaps = 17/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  +    + ++    + +IL  +        P L +L I     PI      +      
Sbjct: 1   MEHSSSLTKVLVATASIIVILAGIKMAGEIIIPFLLSLFIAIICSPIIKFMTKRHIP--- 57

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A   ++ L ++   FL       ++E  + +             +  +       
Sbjct: 58  --LGLAIGLLLGLIVLIFFFLAGMFNGAIQEFTASIPQYKVLLTERLDTVFALIKAYNLP 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      + + +   F  +  ++F+ R    F  +  +  +  + +I  LF     
Sbjct: 116 --------ISITQEDVLNKFDPSVVMNFVSRLLLSFSGVVSNIFVLFLVVIFMLFESPMA 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            + ++    +L      +  +     V   +       T+++   G+ +     +  V  
Sbjct: 168 KYKLA---LALSPDDDLSNEEYYLNQVLDGVIGYLGVKTVVSALTGISIWILLIVLDVQY 224

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V    +  ++  IP     ++   + +  L+         + +       +    L P 
Sbjct: 225 AVLWATLAFLLNYIPNIGSFLAGIPIVLQALLLNGFSVGIGVLIGVVGINMLFGNVLEPK 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 285 MMGKRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 328


>gi|223984398|ref|ZP_03634537.1| hypothetical protein HOLDEFILI_01831 [Holdemania filiformis DSM
           12042]
 gi|223963640|gb|EEF68013.1| hypothetical protein HOLDEFILI_01831 [Holdemania filiformis DSM
           12042]
          Length = 369

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 103/336 (30%), Gaps = 11/336 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L  L+    P L    I +   P       K   S      +  + ++ L I  L+ +  
Sbjct: 44  LTTLRLILTPFLVGFGIAYVVHPFIEFLQKK-GVSRRIAIPLVCLGMLTLLIGILMMVVP 102

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +  EL++ ++            +++    +  + ++ +  +               
Sbjct: 103 MVYDKTTELINSMISGLNWLYQQYVEMNENAPNILVAGIFQQITTLLND---------TK 153

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + +        +     L +  + +F  I   +   D   I + + SL   +        
Sbjct: 154 SWLPNFSALLPQLISKVLSFLTNAVFAFIISVYVLFDFEKIRKTIFSLARTIDKELPI-Y 212

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V   I      + ++   + L     Y L G  S + + ++T+I  ++P        
Sbjct: 213 LSAVNAEISGYLHSLLMLMAIKFLEYSLLYMLIGHKSAITIALLTSIGLIVPYFGATVAN 272

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            + I   +   +     L     +   +    + P +     ++P L T   +  G   +
Sbjct: 273 FIGILTSLTLPLPKVLFLIGGICVLSMVDAYIIAPIVHSRSSQVPPLWTLLCVFAGGMLL 332

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           G +G+ I   +   + VI        +      S +
Sbjct: 333 GPIGIMISIPVFMSLRVIVNLVRFRNERYDPLPSED 368


>gi|20091055|ref|NP_617130.1| permease [Methanosarcina acetivorans C2A]
 gi|19916148|gb|AAM05610.1| permease [Methanosarcina acetivorans C2A]
          Length = 357

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/321 (10%), Positives = 98/321 (30%), Gaps = 9/321 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  ++  +    L++ +  F  ++   ++   +  +   F    +    F      + +
Sbjct: 21  ALTTILFVLFFAILFYFQDIFIVLILGAVLILIAEKMIQFFNRFMDSFPKFNRKAVGLVL 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +    +  L      +  +  L+       Q             G           LS  
Sbjct: 81  LTGAGLIFLLFVGSQVQALGVLIGDFSNIQQDYAS---------GASALFSEHESELSKL 131

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I+    L+  G             +       ++ + +    +++    I   + +
Sbjct: 132 ADSGIIKPQDLQKIGNTIFSGVTDLVSKVSYYLFTGLLIIPLMFGVYFKHHNKIGSYIQT 191

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +  + + + +   F    + +   GL+    ++L G+     LG++   
Sbjct: 192 YAPPEHAEGITRALKRMGRELEDFFSAKMLESAVVGLICCIGFYLGGLEGWFYLGILAGF 251

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +IP   P+      + +    +   A    +   +   I +  L PF++   + +  L
Sbjct: 252 LNIIPYLGPLLGAIPPVIVGYIDSPMTALFAVITVIVAQTIDNLYLIPFMISEKVDINPL 311

Query: 311 PTFFGLVGGVRTMGLLGLFIG 331
            +    +   + +G LG+ + 
Sbjct: 312 LSVVLTLAASKLLGPLGMVLA 332


>gi|310765717|gb|ADP10667.1| Putative inner membrane protein [Erwinia sp. Ejp617]
          Length = 345

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 107/337 (31%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +++   + +IL  +        P L AL       P+ S  I +          +  
Sbjct: 11  QNILLKLATLVVILAGIKLSAEIVVPFLLALFFAIVINPLVSVLIRR-GVRRGMAITLVM 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++ +  + ++ +                               +           +HL
Sbjct: 70  VVMLLVLTLLVIMVAGSL------------------QAFSEVYPQLQAQSAQKLSMLQHL 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    L I S +  +      I   A+     F      ++ +I+ + F   +   +  +
Sbjct: 112 AARFHLNISSSSLAQRLDPGAIMDVATTMLRQFSGAMTRLVLVIMTVIFMLFEVHHLPYK 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L      + P           K +        +I++  G+++  A    G+   +  G++
Sbjct: 172 LRYAL--VNPQIHIAGLHKALKGVTHYLALKALISLVTGVLVWLALLALGIKFALLWGIV 229

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  IP   P I+     +  L+      A  +         ++   L P L+G  + 
Sbjct: 230 AFVLNFIPNIGPVIAGIPPVLQALLLNTPLEAGLVAALFVSIHMLLGNLLEPRLLGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  L+     +G +G+ +   L ++  ++ +
Sbjct: 290 LSSLVVFLSLIFWGWLLGPVGMLLSVPLTSVCKILME 326


>gi|293377081|ref|ZP_06623291.1| putative membrane protein [Enterococcus faecium PC4.1]
 gi|292644297|gb|EFF62397.1| putative membrane protein [Enterococcus faecium PC4.1]
          Length = 345

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 107/354 (30%), Gaps = 17/354 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLSVIFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGIL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDADPVLQYIHNYIERND 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +           +     F     
Sbjct: 125 FFEQLQNGASIALGYLQDIGKLAVAFAMSFILSFFFMIEKQKTIFFSRLFLKSEFSWFFQ 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +    D                              IIA+   L+   A    G    +
Sbjct: 185 DLYYFADKFV----------------NTFGLVLEAQFIIALLNTLLTTIALAAFGFHQLL 228

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I+++IP    I     +S     +G I +   + +   +   I    L P L+
Sbjct: 229 SLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILMTILVVHLIESYVLNPKLM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                LP   TF  L+   R  G+ GL +G  +      + K   +     +E 
Sbjct: 289 SSKTDLPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHSPRET 342


>gi|166367439|ref|YP_001659712.1| hypothetical protein MAE_46980 [Microcystis aeruginosa NIES-843]
 gi|166089812|dbj|BAG04520.1| hypothetical protein MAE_46980 [Microcystis aeruginosa NIES-843]
          Length = 392

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 116/343 (33%), Gaps = 7/343 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + ++ +     + +  F  +L A ++ F      +    ++       A++ ++  +
Sbjct: 36  LVVLNVWALSAIFGYFESLFVILLIAAVLSFLLGYPVTWLE-RQGLKRGLAAIVVSLITI 94

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F+   + L      + ++ V+++      G      L      M      +       
Sbjct: 95  LIFVAVGITLVPLVFTQAQQFVNRLPEWLDSGQRQLMQLDTKIDTMNLPIPIS--FDGLI 152

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +                    A    +  +   L ++  II  F+       I + +   
Sbjct: 153 AQFNSRLGAELQILAGRSVNLALNLTVFTVVRVLDVLLTIILTFYLLLHSPDIWRSIIQW 212

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   +    R+     ++ F+G  I A    L L +A+    VP  +  G++   M
Sbjct: 213 LPKPVQQPFSLTLRL---SFQNYFVGQVICATCMALGLVTAFLSIKVPFGLLFGLLIGTM 269

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP G  +    V+  L ++ +I  A  +     +   IV+  + P ++G    L    
Sbjct: 270 ALIPFGGTVGIVTVTALLALR-DIGLALQVLAVAVVVQQIVENGIAPRILGSVTGLNPFW 328

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               ++ G R  GLLG+ +   +  +I    +       E  +
Sbjct: 329 VLVSVLTGARVGGLLGVIVAVPMAVMIKEALEVIRQVTPEETK 371


>gi|146283129|ref|YP_001173282.1| PerM family membrane protein [Pseudomonas stutzeri A1501]
 gi|145571334|gb|ABP80440.1| membrane protein, PerM family [Pseudomonas stutzeri A1501]
          Length = 276

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 81/272 (29%), Gaps = 11/272 (4%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           LF+      ++  L +++         +   L +    +   E   + +   +       
Sbjct: 4   LFIVPLLWQQVLTLFNELPRMLVEWQSLLLLLPERYPQLVTEEQVLRGIDFMRGEI---- 59

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                     +   +     + +   + ++ + I +FFF +D   IS  +          
Sbjct: 60  ----GRYGQLVLTSSLSSLPLLIGLMIYLVLVPILVFFFLKDREQISNWIKGYLPRE-RG 114

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              ++S+ +   I +   G  I  +   +V  + +   G+     + ++  +  ++P   
Sbjct: 115 LITQVSQEMNLQIANYIRGKAIEILICAVVSYAVFASLGLNYAALMAMLVGVSVVVPYIG 174

Query: 259 PISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
               T     +     G       L +  AI   +    L P L    + L  +     +
Sbjct: 175 ATVVTIPIALIGIFQWGLGDQFFYLMVAYAIIQTLDGNVLVPLLFSEAVNLHPVAIICAV 234

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +      G  G+F    L  L   +       
Sbjct: 235 LLFGGLWGFWGVFFAIPLATLFKAVLYAWPRE 266


>gi|157161061|ref|YP_001458379.1| putative transport protein [Escherichia coli HS]
 gi|157066741|gb|ABV05996.1| putative permease, PerM family [Escherichia coli HS]
          Length = 344

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWEWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|322375735|ref|ZP_08050247.1| hypothetical protein HMPREF0849_01450 [Streptococcus sp. C300]
 gi|321279443|gb|EFX56484.1| hypothetical protein HMPREF0849_01450 [Streptococcus sp. C300]
          Length = 298

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 98/298 (32%), Gaps = 6/298 (2%)

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  V+  ++++ + I  L+ +       + +L + +         +          
Sbjct: 7   LRRPIAMVLVFLALILIVIALLVLVLPTLAQTISQLGTVLSTVLTQLGKLL------GSS 60

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            + ++     +      +  S +      +  +           ++  L I+F    L  
Sbjct: 61  EFVTKDMLSTIVSGIQGQSSSISQALIGFLSGLTSNIGNIFSSLMNAFLIIVFTFSFLSS 120

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                   S+ L              I ++  +      +   I A+  G+++   Y + 
Sbjct: 121 KEHLAAMTSRLLKVFLPEKVVIKLTYIGQVALETYDQFLMIQLIEAVIIGVMIAVGYSVF 180

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+P  V  G+   +++ IP   P+    V    +   +   A    L   +   I    +
Sbjct: 181 GIPYGVMTGIFAGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLI 240

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P +VG  I LP + T      G    GLLG+     + A+I  + KE ++A +   +
Sbjct: 241 YPRVVGQSIGLPAIFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQLD 298


>gi|307944293|ref|ZP_07659634.1| putative membrane protein [Roseibium sp. TrichSKD4]
 gi|307772639|gb|EFO31859.1| putative membrane protein [Roseibium sp. TrichSKD4]
          Length = 355

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/345 (12%), Positives = 105/345 (30%), Gaps = 23/345 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEES 58
           MR ++L     +  +++ +    L   +    P + AL++ +    + +S      +   
Sbjct: 1   MRSSLLT--VTLSLILVCLTGWLLVAGRSLLLPFVIALMLWYLINALSASLARAPSRSGK 58

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 ++    + +  V    +F      + +L             +   ++       
Sbjct: 59  PVLPGWLSLGLSLVVIFVAATVVFDMVAANLADLARDAPTYQARLNDLVTQITATFK--- 115

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                   LS P     L         +     F ++         +  +F+++    F 
Sbjct: 116 --------LSDPIDFNDLLPEGGVQRMVTAGAGFVTQIASSASLVFIYTLFLLLEQSTFD 167

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                +                 ++   + + IR  F   T ++I  G++      + G+
Sbjct: 168 IKFARL------FSNPAKAEAAFRVRAEINESIRHYFGIKTAVSIATGVLTSVILTMMGL 221

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           P     G I  ++  IP    +        + L+   ++     +        F +   +
Sbjct: 222 PYAALFGFIAFLLNYIPTIGSMIGVIFPSMLALVYYDSLTPFFVITFGLGFIQFAIGNLI 281

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            P L+G  + L  +     L       G++G+ +   L  +I +I
Sbjct: 282 EPKLMGSSLNLSGIIIMLSLALWGAIWGVVGMVLCVPLTVIIMII 326


>gi|307250384|ref|ZP_07532332.1| hypothetical protein appser4_11640 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306857594|gb|EFM89702.1| hypothetical protein appser4_11640 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 350

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 107/344 (31%), Gaps = 17/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  +    + ++    + +IL  +        P L +L I     PI      +      
Sbjct: 1   MEHSSSLTKVLVATASIIVILAGIKMAGEIIIPFLLSLFIAIICSPIIKFMTKRHIP--- 57

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A   ++ L ++   FL       ++E  + +             +  +       
Sbjct: 58  --LGLAIGLLLGLIVLIFFFLAGMFNGAIQEFTASIPQYKVLLTERLDTVFALIKAYNLP 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                      + + +   F  +  ++F+ R    F  +  +  +  + +I  LF     
Sbjct: 116 --------ISITQEDVLNKFDPSVVMNFVSRLLLSFSGVVSNIFVLFLVVIFMLFESPMA 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            + ++    +L      +  +     V   +       TI++   G+ +     +  V  
Sbjct: 168 KYKLA---LALSPDDDLSNEEYYLNQVLDGVIGYLGVKTIVSALTGISIWILLIVLDVQY 224

Query: 241 HVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V    +  ++  IP     ++   + +  L+         + +       +    L P 
Sbjct: 225 AVLWATLAFLLNYIPNIGSFLAGIPIVLQALLLNGFSVGIGVLIGVVGINMLFGNVLEPK 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 285 MMGKRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 328


>gi|89099562|ref|ZP_01172437.1| hypothetical protein B14911_11272 [Bacillus sp. NRRL B-14911]
 gi|89085715|gb|EAR64841.1| hypothetical protein B14911_11272 [Bacillus sp. NRRL B-14911]
          Length = 352

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/334 (13%), Positives = 100/334 (29%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
               +  +  + + +I    YF+     P++ A I      P+      K         +
Sbjct: 4   FFTKRFFIWLIGLILIGTLFYFILPVSVPLIVAFITALMLEPLVKLLQGKLNIKRRISVM 63

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  ++ +    +   F+    + E  +LV                  +            
Sbjct: 64  IVFIAFVLFIGLSGYFITTKVITEAIKLVENAPEYVNEINNAWLDAEEKFTRAAEDLPKD 123

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   ++                           +Y +S +  +IALF F  D   +
Sbjct: 124 VVDEISNQVQTFLNKTKTELVAYVSIDNVKALLTNIPNYLVSFLVYLIALFLFLIDLPRL 183

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +   +            ++  +  V+   F    ++++    V      +      + +
Sbjct: 184 RRGAYNHLTEKTADKVSFMTSRLSYVVLGFFKAQFLVSLIIFFVSLVGLLIIAPDIALVM 243

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++  I+  IP    I          +              A  L I+ +T+ P ++G  
Sbjct: 244 ALVLWIIDFIPIIGSIVILGPWALFHLLTGDVVLGTKLAVLAAVLLIIRRTVEPKVMGTH 303

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           I L  L T   +  G++ +G+LG  IGP+++   
Sbjct: 304 IGLSPLSTLIAMYLGLKLLGILGFIIGPLILIAF 337


>gi|115524867|ref|YP_781778.1| hypothetical protein RPE_2861 [Rhodopseudomonas palustris BisA53]
 gi|115518814|gb|ABJ06798.1| protein of unknown function UPF0118 [Rhodopseudomonas palustris
           BisA53]
          Length = 377

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 91/334 (27%), Gaps = 1/334 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++    LV  ++       + + ++ G     +                 +  V + 
Sbjct: 33  IMTVLAVGFLVFTWYFAATLFLIFAGILFGVFLSALTGLLGRVIGGGHGVRLALVCVLLT 92

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS-DIPGGMWASELWTKHLSHP 130
            +    ++        + + L + +     +G         D       +       S  
Sbjct: 93  GMSTGVMVLGGSTIAQQARLLSNTIKAQIVNGKAFLEEHGVDTSFLELGAPAPAGEPSTV 152

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
              + L       +G   I     +  +  +    +   +I     F          L  
Sbjct: 153 TPPRNLPSAGAIASGGGAIVSQTLKLILGAVSAVGNFFIVIFLGVCFAAQPSVYRSGLLR 212

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                  A+  +I   +  V++   L   I       +      + GVP    LG+   +
Sbjct: 213 FIPSPHRAFAAEIVDDIGDVLQRWLLAQMITMTAVFAITAIGLKIIGVPGAFILGIQAGL 272

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +A IP    I    + +   I          F+       +    L P +    + +P  
Sbjct: 273 LAFIPTLGAILGGLIIVLASIASGWVAVISAFVLFLGVHALESYILTPLIQRQALDIPPA 332

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F   +      GL GL +   LMA+  V+   
Sbjct: 333 TLFAMQILLGMVFGLWGLALALPLMAIAKVVMDH 366


>gi|292656983|ref|YP_003536880.1| Htr-like protein [Haloferax volcanii DS2]
 gi|291372863|gb|ADE05090.1| Htr-like protein [Haloferax volcanii DS2]
          Length = 433

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 113/371 (30%), Gaps = 26/371 (7%)

Query: 1   MRETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M    +     M W + + +     Y +  F    +  L I + + PIY     + +  S
Sbjct: 1   MALPDIQRSRAMWWSLALVLAGALTYVVYSFIGTFVFGLFIYYATRPIYWRIRRRVKPPS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              AV      + +  + +           +E +      +   +P+      I   +  
Sbjct: 61  LAAAVALFALALPVLGLVVYAATIAL----REFLRYADRLSTDEVPIDLEAYGIDPTLLE 116

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                + L       +L+   L +         A+          + +  MI   F+  R
Sbjct: 117 GIASPQALLEYDFRSVLTPEALGSVFDS--LSVAANTFAFLGVGAIHLFVMIAFAFYLLR 174

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV- 238
           DG  + +   S+         +   R V +   + F G  + AI  G +   AY L  V 
Sbjct: 175 DGHRLRRWGQSMFADDHG-ILEAYMRGVDRDFNNIFFGNILNAILTGTIGVIAYSLLNVL 233

Query: 239 -------PSHVALGVITAIMAMIPGGAPISFTAVS--------IYLLIKGNIFNATCLFL 283
                  P+   +G++  + ++IP                         G  F      +
Sbjct: 234 APAGVRIPAPALIGLLAGVASLIPVVGMKLVYVPIAGYMGLEAAIANPPGLWFVLLFAAV 293

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I   I D  LRP++ G    L           G    G  G+F+ P+++ L     +
Sbjct: 294 SFVIVDTIPDLVLRPYVSGRS--LHVGAVMLAYTFGPLLFGWYGIFLMPMILVLFVNFAR 351

Query: 344 ESIMAIKENKE 354
             +  +   K 
Sbjct: 352 LVLPELLAGKP 362


>gi|254975864|ref|ZP_05272336.1| hypothetical protein CdifQC_11154 [Clostridium difficile QCD-66c26]
 gi|255093251|ref|ZP_05322729.1| hypothetical protein CdifC_11434 [Clostridium difficile CIP 107932]
 gi|255314993|ref|ZP_05356576.1| hypothetical protein CdifQCD-7_11612 [Clostridium difficile
           QCD-76w55]
 gi|255517668|ref|ZP_05385344.1| hypothetical protein CdifQCD-_11201 [Clostridium difficile
           QCD-97b34]
 gi|255650778|ref|ZP_05397680.1| hypothetical protein CdifQCD_11376 [Clostridium difficile
           QCD-37x79]
 gi|260683863|ref|YP_003215148.1| membrane protein [Clostridium difficile CD196]
 gi|260687523|ref|YP_003218657.1| hypothetical protein CDR20291_2171 [Clostridium difficile R20291]
 gi|306520681|ref|ZP_07407028.1| hypothetical protein CdifQ_13206 [Clostridium difficile QCD-32g58]
 gi|260210026|emb|CBA64079.1| conserved membrane protein [Clostridium difficile CD196]
 gi|260213540|emb|CBE05283.1| conserved membrane protein [Clostridium difficile R20291]
          Length = 353

 Score = 95.8 bits (237), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 109/333 (32%), Gaps = 1/333 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +I  I+ + L FL     P + + II     PI     +    + T ++++  +
Sbjct: 12  KFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNLNRTLISIVILL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L I  L+         + ++  ++    +  I                 +    + 
Sbjct: 72  IFYGLCIFLLVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDASTPNVNLSLIL 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++     + + +   + +    +        + L +I  +IA FFF  D   I   +
Sbjct: 132 GWDNISQSMMSLVASISTNAL-NAIASIASKTPAFMLKLIITLIASFFFTFDYQKIVNFI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         I       +        I+     L L     +  V +   + VI 
Sbjct: 191 LKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFLELLIGLTILKVENAFTISVII 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A++ ++P     S     + + +     N     L   I + +V + L P +VG  I L 
Sbjct: 251 ALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEPKVVGHQIGLY 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   +  G +  G+ GLF  P+   +I  +
Sbjct: 311 PLITLMCMFIGAQLFGIAGLFGFPIAATIIKNL 343


>gi|196233557|ref|ZP_03132399.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
 gi|196222409|gb|EDY16937.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
          Length = 347

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/344 (11%), Positives = 107/344 (31%), Gaps = 19/344 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R ++   ++  L+ L      +  + ++      +             +  +   + 
Sbjct: 5   SLGRVILAIAVIGLLFLLGKLLLVLFLSTLLALALNQVVGWVGRWGWPR--WAGIGVALL 62

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++  F+  L  L      +  +LV+ +    +  +        +P               
Sbjct: 63  IVLAFVALLGLLIPGLAGQAGKLVAHLPDVQKQVVTQLPGSGPLP--------------- 107

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +          +  D +         + L+     + M++   +   DG  I Q L 
Sbjct: 108 --EIANKLLQSASFSDPDAVIGKFVTGAAVALEVVSQFLVMLVIAVYLLVDGSRIFQWLL 165

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +       + +++ S  + +V+    +G  I +   G           VP+ + L ++ A
Sbjct: 166 AFLPRAQRSKFREASPKIAQVVSRFIVGQFICSTLAGTYAFVVLSCLHVPNAILLALVAA 225

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  ++P      F   ++ +    +   A  +         +    + P + G  +KL  
Sbjct: 226 IFDILPILGFFLFIIPAVGMAFTVSPVVAGAVAALYGAYHLMEAYFIVPKVYGEQLKLST 285

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L      + G    G +G      ++A   V+ K  +    ++ 
Sbjct: 286 LTVLLSCLAGWLLGGPVGAVAILPVVASYPVVEKIWLEPWLQSD 329


>gi|188578949|ref|YP_001915878.1| transport protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188523401|gb|ACD61346.1| transport protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 338

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/336 (11%), Positives = 109/336 (32%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +    +  +L+  +    P++ A+       PI                    +  +
Sbjct: 1   MVVLATLAVGYTLWAAQTIILPIMLAVFFALIGNPILRGLRKLYIPR--------FLGAL 52

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + L       +            A QH   +   + ++   +  +    ++ +   
Sbjct: 53  LILCLGLAGTVTLAVQLAGPAAEWAQQAPQHMQQIAHDVRNLTKPVMQANQAAENFARAA 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +      +    +D   +   R   +          +++  FFF   G S+ +   +L
Sbjct: 113 GGEGQRGVQIVRTQMDDPYKALVRTPKLAASVLA----VVLLTFFFMVYGESLQRHAIAL 168

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + 
Sbjct: 169 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGILYVLKIPLPEAILWGTVV 228

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 229 GLLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L    GL+      G++GL +   L+  I ++ 
Sbjct: 289 ISPLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVL 324


>gi|300959061|ref|ZP_07171156.1| putative AI-2 transport protein TqsA [Escherichia coli MS 175-1]
 gi|300314320|gb|EFJ64104.1| putative AI-2 transport protein TqsA [Escherichia coli MS 175-1]
          Length = 343

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|213963730|ref|ZP_03391980.1| membrane protein [Capnocytophaga sputigena Capno]
 gi|213953610|gb|EEB64942.1| membrane protein [Capnocytophaga sputigena Capno]
          Length = 358

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/352 (13%), Positives = 117/352 (33%), Gaps = 24/352 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-STFLAVIAT 67
           + +   +++ + L +LY L+     ++ +L++     P+   F  + +    T   ++  
Sbjct: 12  RAVGIIVLVVLGLYTLYLLQSIIIYLIVSLVLTLMGKPLIQFFYKRLKIKSKTVCVILTM 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + L +          + + K L    +   +  I      +    G+   +      
Sbjct: 72  TIFILLALSVFSLFIPLLVSQGKNLSGLNIDLLKTNIDNLIQQTLSKVGLQKEDYSFGVQ 131

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +               IP F + F     D+ +    ++   FFF +DG  I   
Sbjct: 132 EMLNFID--------------IPNFLNSFISFISDFGVGAFSVLFISFFFMKDGEKILIA 177

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S          K     +  ++   F+G+ +      ++      + GV +   + ++
Sbjct: 178 LLSTFSTHRKRKLKTSIFKINNLLSRYFVGLILQITILFVIYTVILLIFGVENAFIIALL 237

Query: 248 TAIMAMIPGGAPISFTAVSIYL---------LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            A++ +IP   P+    +   L          +  ++     + +   I   + +   +P
Sbjct: 238 CALLNLIPYVGPMIGFVLMALLTMSSNLQNDFMSVSLPTTIYVLVGFLIGQLVDNVFSQP 297

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +    +K   L  F   +      G++G+ +      ++ V+ KE     K
Sbjct: 298 LIFSNSVKSTALEIFLITLISGTLFGMVGMVVAIPAYTVLKVVLKEFFPNNK 349


>gi|154248269|ref|YP_001419227.1| hypothetical protein Xaut_4349 [Xanthobacter autotrophicus Py2]
 gi|154162354|gb|ABS69570.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 368

 Score = 95.8 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/343 (19%), Positives = 127/343 (37%), Gaps = 5/343 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L    +    +  +++     +K F  P+L  LII   S P++    +     +   A +
Sbjct: 17  LLRLALRFGTLALLLIWCFTIMKPFLNPILWGLIIAIASHPLFVRLRAAVHGRTAVAATL 76

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + L ++P   L    ++ +K L   +        P P  +            +  
Sbjct: 77  YVLLALALLVLPAYLLADTLIVSLKLLAHHLADGTLRVPPPPDSVRTWILVGDPIHRFWL 136

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             S        S T   T     +    S   + FL++ ++I      +           
Sbjct: 137 LSSTNLDQAFASITPELTTMGRSMVSGVSDVLVGFLEFIIAIFVAAAFMANAASGQRIAG 196

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L         +  + +  + IRS   G+  +A+ + L+ G  +  A +P+   L 
Sbjct: 197 DVAIRLA----GEGGRSYADLAVRTIRSVTKGIIGVALIQSLLAGLGFLAADIPAAGLLA 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  I+A++     +    V IY     +   A    +W      I    LRP ++   +
Sbjct: 253 LLCLIIAIVQLPLVLVLLPVVIYAFTILDPVPAVVFAVWCTGVSLIE-HVLRPLMLARGV 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +P L  F G +GG+ T G+LGLF+GPV++AL   +    + A
Sbjct: 312 DVPMLVVFIGAIGGLLTSGVLGLFVGPVVLALGYTLVLAWLQA 354


>gi|325273487|ref|ZP_08139726.1| hypothetical protein G1E_10548 [Pseudomonas sp. TJI-51]
 gi|324101378|gb|EGB98985.1| hypothetical protein G1E_10548 [Pseudomonas sp. TJI-51]
          Length = 290

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 118/273 (43%), Gaps = 5/273 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + +  F + +L   I+ F SWP+            T  A + T++ + +  +PL++L + 
Sbjct: 22  WVMAPFISALLWGAILAFASWPLMRLLTRVLGGRETLAASLLTMAWILIVALPLVWLGFN 81

Query: 85  GMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               +++  + V           P WL  +P        W + L    +  + S      
Sbjct: 82  LADHIRDATAFVRDVQVDGLPDAPAWLGGLPFVGERLVSWWQSLDQQGAALLASVKPHLG 141

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              +++   +++ G   L+  LS++F+     FFYRDG  +S  +  L   L        
Sbjct: 142 QVGNWLLARSAQIGSGVLELTLSLVFVF----FFYRDGPRLSAFVLRLLHRLMGDRAAYY 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             +V   ++    G+   A  + L+    + +AGVP  + LG++T ++++IP G P+++ 
Sbjct: 198 LELVAATVQRVVNGVIGTAAAQALLALIGFLIAGVPGAIVLGLVTFMLSLIPMGPPLAWI 257

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             + +L+ KG    A  L +WG   +  VD  L
Sbjct: 258 PATAWLVWKGEYGMAVFLGIWGTFVISGVDNVL 290


>gi|325981599|ref|YP_004294001.1| hypothetical protein NAL212_0916 [Nitrosomonas sp. AL212]
 gi|325531118|gb|ADZ25839.1| protein of unknown function UPF0118 [Nitrosomonas sp. AL212]
          Length = 410

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 103/359 (28%), Gaps = 50/359 (13%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L+ FF  +    ++ F + P+     +K +       V+  +  + +      ++    +
Sbjct: 28  LQDFFGLIFITFVLTFIATPLVHIGRNKLKLPHRASLVLVYIFFLVVLGSFFRYVTPSVI 87

Query: 87  LEMKELVSKVVLANQHGIPV---------------------------------------- 106
            E    ++         I +                                        
Sbjct: 88  GEANRFINNFSEVQLKLIEMKRDVIGKYPGIERPVHGYARSILDEDSLRVIDAKLNRFRQ 147

Query: 107 ------PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
                    L D+       + + K   +      L    L T  +  +     +     
Sbjct: 148 KLNFSDIEHLDDVRENEVTEDTYEKLRKYYDKETELLVELLMTKQMGKVREELPKLINYL 207

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLG 217
                ++   ++  F    D   +   + SL E     ++++          V+      
Sbjct: 208 YKAIGTMSLALLFSFLILFDSVRLGGLMKSLHESRLKDFYQETAQPVIRFAYVVGRAIQA 267

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIF 276
             +IA     +      + G+PS   L +I  + + IP     IS T + +  L  G + 
Sbjct: 268 QAMIACVNTFLTLIGLVILGIPSVALLSLIVFVCSFIPVLGVFISTTPMVLVALNTGGLT 327

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            A  +     I   I    L P + G  +KL  +     L+    + GL G+ +G  + 
Sbjct: 328 LALGIVGMITIIHIIEAYGLNPMIYGKHLKLNPVLVLIILLIAYHSFGLWGMILGVPVA 386


>gi|82544032|ref|YP_407979.1| transport protein [Shigella boydii Sb227]
 gi|81245443|gb|ABB66151.1| putative transport protein [Shigella boydii Sb227]
 gi|332095617|gb|EGJ00629.1| hypothetical protein SB359474_1766 [Shigella boydii 3594-74]
          Length = 344

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/337 (13%), Positives = 113/337 (33%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +      ++++ T+
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            VM + ++                       N+    +P++ + I   + A E   + + 
Sbjct: 72  IVMAMVLLLAYLG---------------SALNELTRTLPQYRNSIMTPLQALEPLLQRVG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S+  L+        +  +    ++     L   L ++ ++  L    +      Q +
Sbjct: 117 IDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMLSIFLLLLTVLFMLLEVPQLPGKFQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 177 AR------PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|103486275|ref|YP_615836.1| hypothetical protein Sala_0783 [Sphingopyxis alaskensis RB2256]
 gi|98976352|gb|ABF52503.1| protein of unknown function UPF0118 [Sphingopyxis alaskensis
           RB2256]
          Length = 365

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 97/309 (31%), Gaps = 19/309 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +  +      L  FF  V +A+++G     I S  + +          ++   
Sbjct: 33  AAVIVIAIAGVAWLAVSLTRFFMLVFAAVVLGAVFDAIASWLVRRARVGRGIALALSVAG 92

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +F    +        E+  +  +V  A +                            
Sbjct: 93  IVAVFAGAFILFGSQLAREIDTIREQVPQALRGVEAFLDRYG------------------ 134

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               ++     + +  I  +   A  + +         + +++A  F   D  +  + L 
Sbjct: 135 -LGARVRELAEVGSEDISQLVSQAGGYALAAGSGIADFVLVLVAGIFLASDPATYRRGLL 193

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      A          + ++   +G  + ++    +  +   L GVP+   LG+I  
Sbjct: 194 LLVPARAEATAALALDDAARGLKGWMIGQAVSSLVVAALTWAGLALLGVPAAGGLGLIAG 253

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP   PI     ++ L    +   A    +   +   +    L+P +    + +P 
Sbjct: 254 LLDVIPMIGPIIAGIPAVLLAFTVSPMTALWTLILFLVIQQLQGNFLQPMIQKQAVDVPP 313

Query: 310 LPTFFGLVG 318
               F +V 
Sbjct: 314 AVLLFAVVA 322


>gi|293570925|ref|ZP_06681970.1| transport protein [Enterococcus faecium E980]
 gi|291608988|gb|EFF38265.1| transport protein [Enterococcus faecium E980]
          Length = 345

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/354 (13%), Positives = 108/354 (30%), Gaps = 17/354 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLSVIFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGIL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDADPVLQYIHNYIERND 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +       +   +     F     
Sbjct: 125 FFEQLQNGASIALGYLQDIGKLAVAFAMSFILSFFFMIEKQKTILFSRLFLKSEFSWFFQ 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +    D                              IIA+   L+   A    G    +
Sbjct: 185 DLYYFADKFV----------------NTFGLVLEAQFIIALLNTLLTTIALAAFGFHQLL 228

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I+++IP    I     +S     +G I +   + +   +   I    L P L+
Sbjct: 229 SLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILMTILVVHLIESYVLNPKLM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                LP   TF  L+   R  G+ GL +G  +      + K   +     +E 
Sbjct: 289 SSKTDLPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVKKIPNHSPRET 342


>gi|304315341|ref|YP_003850488.1| hypothetical protein MTBMA_c15960 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302588800|gb|ADL59175.1| conserved hypothetical protein [Methanothermobacter marburgensis
           str. Marburg]
          Length = 335

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 122/356 (34%), Gaps = 21/356 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E +        ++++ +IL+S   +   +  +    +  +   P+      +     +
Sbjct: 1   MIERLRGTITSASFLVLALILLSAIVIYPIWTMLFLGAVFAYIVRPVALRINERI-PYLS 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +IA + V+   I  ++F     +     L++                          
Sbjct: 60  VSIIIAMIVVIMPLIGIVVFTVDSLINSTPSLITLARGF--------------------D 99

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +           + +   + T+ +     +            L +   + + F+F RD
Sbjct: 100 IPYLPGQLQSSGGTLGALRGILTDILRGSINYVIDVIQSVPMIALQLFIFLSSTFYFARD 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  +   +  +       + ++++    +V+ S F G  + A+  G++ G  + L G P 
Sbjct: 160 GERLLSYIRGIIPTEAKPFMRRMASETERVLMSIFYGHFLTALLIGIMAGLGFHLLGYPY 219

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG+IT I  +IP   P +         +         L L   I L  +D  LRP L
Sbjct: 220 AIVLGIITGIFQLIPVIGPWAAYTPLAIYDLVTGNILRGVLVLIFGIFLSTIDIYLRPKL 279

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            G    +  +    G +GG    G+ G  +GP+++ L     +   +     +E  
Sbjct: 280 SGKYADIHPMIFLVGFLGGPVVWGVAGFIVGPLVLGLAYAALEAYRLGESAAEENQ 335


>gi|209559400|ref|YP_002285872.1| hypothetical protein Spy49_0869 [Streptococcus pyogenes NZ131]
 gi|209540601|gb|ACI61177.1| hypothetical protein Spy49_0869 [Streptococcus pyogenes NZ131]
          Length = 369

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 107/331 (32%), Gaps = 13/331 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISK-----------KEESSTFLAVIATVSVMCLFIVPLLF 80
            P        +    + S++               +       ++A ++   L    +  
Sbjct: 40  LPFFYGAAGAYIVNIVMSAYEKVYVYIFKDWSHVLKVKRGICLLLAYLTFFILITWIISI 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +    +  +  L     +  Q  +        +   +       K      +        
Sbjct: 100 VIPDLITSISTLTKFDTITIQEVVNNLEHNKLLARTIQYIGGDGKLTETIANYSQQLLKQ 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T   + I    +      ++  +S +F +  L          +  +D+     +    
Sbjct: 160 FLTVLTN-ILTSVTVIASAIINLFISFVFSLYVLASKEDLCRQGNTLVDTYTG-KYAKRI 217

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  ++ +     F+  T+ A+  G +  S  ++  +P    +GV+ A  A+IP     
Sbjct: 218 HYLLELLHQRFHGFFVSQTLEAMILGSLTASGMFILRLPFAGTIGVLVAFTALIPVIGAS 277

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
              A+   L++  ++  A    ++  I   I    + P +VGG I LP +     +  G 
Sbjct: 278 IGAAIGFILIMTQSMSQAIIFIIFLIILQQIEGNFIYPKVVGGSIGLPAMWVLMAITIGA 337

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
              G++G+ I   L A +  + K++I   + 
Sbjct: 338 SLKGIVGMIIAVPLAATLYQVIKDNIQKRQA 368


>gi|114778648|ref|ZP_01453464.1| hypothetical protein SPV1_12495 [Mariprofundus ferrooxydans PV-1]
 gi|114551113|gb|EAU53674.1| hypothetical protein SPV1_12495 [Mariprofundus ferrooxydans PV-1]
          Length = 343

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 35/336 (10%), Positives = 89/336 (26%), Gaps = 23/336 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +M      +++  +        P L A  I            ++        + +A + 
Sbjct: 7   ILMTGAAFVVVVAGMQAAASLLIPFLLAAFIAIICLSPLYWLHAR-----GLPSGVAVLI 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + ++    +  +    + +    + +           L +   G            +
Sbjct: 62  IALVLVLTGTLIGVFVGASLSDFSHNLPVFQARLQTQTDGLLNWLSGFGLQLDSQLLRDN 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 +        G+           +  +   L    +        R   S      
Sbjct: 122 FSPSLAMGMAGKLLAGLGNALANTFLIVLTVIFLLLEASALPHKWTLMGRHAPS------ 175

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       +        + S       +++  G V+     L GV   +  G+I  
Sbjct: 176 -----------GEHFSRFIASVNSYLAIKGWVSLATGAVIAIWLALLGVDYPLLWGLIAF 224

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   +P    I       +  L++    +A    +       I+   + P  +G  + L 
Sbjct: 225 LFNFVPNIGSIIAAVPAVLLALVQLGPGSALAAGVGYLAVNIIMGNVVEPRYMGRGVGLS 284

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L  F  LV     +G +G+ +   L  ++ +  + 
Sbjct: 285 TLVVFVSLVFWGWILGPVGMLLSVPLTMIVKLALEA 320


>gi|215486777|ref|YP_002329208.1| putative transport protein [Escherichia coli O127:H6 str. E2348/69]
 gi|312966641|ref|ZP_07780861.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|215264849|emb|CAS09234.1| predicted inner membrane protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288751|gb|EFR16651.1| conserved hypothetical protein [Escherichia coli 2362-75]
          Length = 344

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVHWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|33864295|ref|NP_895855.1| hypothetical protein PMT2030 [Prochlorococcus marinus str. MIT
           9313]
 gi|33641075|emb|CAE22204.1| Domain of unknown function DUF20 [Prochlorococcus marinus str. MIT
           9313]
          Length = 356

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 12/294 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    ++A +I F           +          +  V  + L ++  + L    +
Sbjct: 34  LAPFPGLFVTAALIAFLLDIPSRWINQRLGLPRWLAIGVVAVLAVGLLVLAGVALVPRLI 93

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++++             L +   G      +    S   +          +   
Sbjct: 94  DQLGQLINELPGWLVAAEGWVSRLQEWASGRGLPSEFGDFSSDLLTRL--------SGVA 145

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +         L   ++ + +++   F    G  I+  L       +      +   
Sbjct: 146 TQLSQQLLGILGATLGITINTLLVLVLAVFLLLGGDPITAGLARWLPDQWREL---VVDT 202

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +    R  F G  ++A+       + + L  +P  V   V+     +IP  + ++   VS
Sbjct: 203 ITGTFRGYFAGQVLLALILSGGQIAVFTLLDIPFGVLFAVLIGFTTLIPYASALTIVGVS 262

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             L    +      +         IVD+ ++P L+G  + L        L  G 
Sbjct: 263 ALLA-LQDPRMGLEILAAAIAVGQIVDQVIQPRLMGSIVGLQPAWLLIALPIGA 315


>gi|241668900|ref|ZP_04756478.1| hypothetical protein FphipA2_09034 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 320

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 119/317 (37%), Gaps = 7/317 (2%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ L  F   +L A ++     P+         +     + +  + ++    +P+L + Y
Sbjct: 1   MWVLYPFIYSILFAGLLAIILAPLQEYLEQHIGKHR--SSFLLVMGILLCVFIPILIVLY 58

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
           Y + E+   +      +Q    +   +  IP      +     L    +    +      
Sbjct: 59  YAISEIVSYLQHPETLSQTFATLGDSIGKIPYIGSILQEHLDKLIKAINDDSDTII---- 114

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + +  I       G   + +    +  ++ ++ F     ++ +    +    F      I
Sbjct: 115 SNLGQILPKVRYVGSTSISFITDFLITLLLVYQFLVSSSTLEKFAKKVVLKDFDDSDSFI 174

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           S  +    R   L + + A   G V+   + L G+P+ + L    AI +MIP    I + 
Sbjct: 175 STAII-TTRRVSLAIFLTASLVGTVMAITFLLTGMPTPILLAFTVAIASMIPFMVGIVYI 233

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            +   + +      A  + + G       D  ++P ++   ++L F  +  G++GG++  
Sbjct: 234 LIGASVFVVYGATKAIIILVVGFALNIFTDNIMQPKIINKQVQLSFAASLIGILGGIQAF 293

Query: 324 GLLGLFIGPVLMALIAV 340
           G +G+F+GPV+  +  V
Sbjct: 294 GFIGIFLGPVIFNVTFV 310


>gi|116872345|ref|YP_849126.1| hypothetical protein lwe0927 [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741223|emb|CAK20345.1| putative membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 348

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 114/352 (32%), Gaps = 19/352 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   ERLKENNTARRVLVFLLIGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYTLVAIFLYVAIVHFLPILINQISQLVDSLVKIYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G++FI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQTGVNFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+   ++   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVATFGVVLEAQLMIALVNTIITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVIYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                LP   TF  L+      G+ GL +G  +   +  I +      ++ +
Sbjct: 287 SSKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILEVRNSEDRKKR 338


>gi|53712882|ref|YP_098874.1| hypothetical protein BF1591 [Bacteroides fragilis YCH46]
 gi|52215747|dbj|BAD48340.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 332

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 133/332 (40%), Gaps = 22/332 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              +  F   +L AL I        +   ++ +   +F A++ T   +  F+VP+  + +
Sbjct: 22  FRQITPFLGGLLGALTIYILVRKQMTYLGARMK--RSFAALLITGEAILCFLVPISLIVW 79

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + +++++                  +  P  +         +   ++   +  +    
Sbjct: 80  MLVNKLQDI------------------NLDPQAIITPVEELAGIIKAKTGYDVLGSDTLP 121

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  +P+           + +++  ++  L+F    G  +   +D +         +++
Sbjct: 122 FIVSLLPKIGQAVMGGISSFAVNLFVLVFVLYFMLIGGTKMEAYIDDILP-FNEKNTREV 180

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISF 262
           +  +  ++RS  +G+ ++A+ +G V    Y++ G P+   +GV+T    +IP     + +
Sbjct: 181 THEINMIVRSNAIGIPLLAVIQGGVALIGYFIFGAPNAWLIGVLTCFATIIPMVGTALVW 240

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+ YL + G   NA  L  +G I +   D  +R  L         L T FG+V G+  
Sbjct: 241 FPVAAYLALTGEWANAIGLAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLSL 300

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G +G+  GP++++L  +          +NK+
Sbjct: 301 FGFMGVIFGPLVLSLFLLFVDMFKKEYLDNKK 332


>gi|254517038|ref|ZP_05129096.1| transporter, PerM family [gamma proteobacterium NOR5-3]
 gi|219674543|gb|EED30911.1| transporter, PerM family [gamma proteobacterium NOR5-3]
          Length = 377

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 125/339 (36%), Gaps = 4/339 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I+ +++        F   +L  +I+  + +P++ S   +   S    A +  V  
Sbjct: 21  IRLGLIVAVVIACERIFAPFLPIMLWGVILAVSLYPLFLSLCRRTRLSPGSNAALIVVLG 80

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L  VP + L       + +++     +          + D P                
Sbjct: 81  ILLLGVPTVMLGSSFATHIFDVIGNFDASTYTVRAPNDAVKDWPIVGERVFAAWSSAYTD 140

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I S      N      + A+      L +  ++I   + + +      ++ +    
Sbjct: 141 LPGFIESLQPQLGNFSKSAAKAAASTAGTLLFFFGALIIAGVMMAYGESGTAAVGRIFAR 200

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +           I+ +    +RS   G+  +A  + L+ G  + LAG P+   L ++T I
Sbjct: 201 MVGGQKGPALHTITTL---TVRSVATGVVGVAFIQALLFGVGFMLAGTPAAGLLALVTLI 257

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL-WGAIELFIVDKTLRPFLVGGPIKLPF 309
           M ++   A +    V  Y+   G+      + L    I     D  L+P L+G  + +P 
Sbjct: 258 MGIVQLPALLVSLPVIAYVWGMGDGGTVVNVALTIYFIIAGFSDNVLKPMLLGRGVSVPM 317

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                G +GG+   G++GLF+G V++++   ++   +  
Sbjct: 318 PVVLLGALGGMMGAGIVGLFVGAVILSVGYELFMGWVDE 356


>gi|295400285|ref|ZP_06810264.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977560|gb|EFG53159.1| protein of unknown function UPF0118 [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 342

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/331 (12%), Positives = 99/331 (29%), Gaps = 19/331 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +I  +++  LY ++     +L   I  F    +      +   +   + ++  V+V+ 
Sbjct: 16  RIVIFSVLIFILYLVRSILNIILLTFIFSFLMNGLVDFISKRIRINRKIIVLLLYVAVVS 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++      + E+ +L+ ++               +I       +L    ++   +
Sbjct: 76  ILVYGVVKYLPVVINEISQLIKQLTEFYSKPQD------NIVFNYIIEQLKHYEITTYLN 129

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +       ++      +      +           +     F Y        +L+  G
Sbjct: 130 FGMTYLIKYFSDIGSVGLQILLALILSLFFLLEKERIISFTNRFKYSKISPFYNELEYFG 189

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                                      IIA     +  +  W+   P    LG++   + 
Sbjct: 190 RKFVR------------TFGKVIEAQFIIATVNMAITVAGLWIMDFPQLFGLGILIFFLG 237

Query: 253 MIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP    I     +       G I     + +  A+   +    L P L+     LP   
Sbjct: 238 LIPVAGVIISLFPLCFIAYSIGGIMKVVYILIMIAVIHALEAYVLNPKLMSSKTNLPVFY 297

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           TF  L+      G+ GL +G  +   I  + 
Sbjct: 298 TFIVLIFSEHFFGVWGLILGIPVFVFILDVL 328


>gi|153840429|ref|ZP_01993096.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149745907|gb|EDM57037.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ3810]
          Length = 342

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 108/322 (33%), Gaps = 19/322 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LYF K    P++ +  +     P+ + F  K    +  + V  T+ V    +       
Sbjct: 25  ALYFAKPVLLPMVISTFVALLFSPLINYFEDKGLPRTITVVVTLTLLVSVSILGLAA--- 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  K+  +++    Q+       ++                     L+I S+  + 
Sbjct: 82  --ISEPAKQWWAELPSIVQNVSQEVNEVTK-----------ASSEHMNAPLEIASDMNID 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EMGNNTVFSLLKALATTTPTLLTQAMIVLFMVYFMLNHGRSLFRKSVSRLRGFSKQRQAV 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ + + K +      +T++  G GL +G  +++ G+      G    +M   P   P+ 
Sbjct: 189 ELVQALQKDLSRYIGTITLVNAGLGLCVGLVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 262 FTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++  L   ++     +     +   I  + + P L+G    L  L  F  LV  
Sbjct: 249 SMVSFGFVAYLQLDSVSFMLTVVSIYLLLNLIESQFVTPTLLGRRFNLNPLVIFMWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G +GL IG  L+  I ++
Sbjct: 309 GWLWGGMGLLIGVPLLVCINIL 330


>gi|166363128|ref|YP_001655401.1| hypothetical protein MAE_03870 [Microcystis aeruginosa NIES-843]
 gi|166085501|dbj|BAG00209.1| hypothetical protein MAE_03870 [Microcystis aeruginosa NIES-843]
          Length = 345

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 106/337 (31%), Gaps = 11/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++ + + L  L+ ++     +  A++              +         +I  ++ +
Sbjct: 7   LGFICLIMALYVLWQIRQLLLLIFMAIVFTVALNRCVKGLQ-RLGIKRGLAILITLLTSL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + I+  + +    + + ++L+  +  A                  W   L        Q
Sbjct: 66  AIVILFFIIIVPPFIEQFQKLIELLPQAWDLVRNNSIQWRQQFQFDWLPSLPNLTDLFQQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                           F+      F    +   L ++F+++       +     Q    L
Sbjct: 126 ----------LQPLGTFVFSNFFTFFSNSVAAILQLLFVLVLAMMMLANPQPYRQAFLKL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             + +    ++I  +    + +  LG+ I +   GL  G   WL  +   +   ++  ++
Sbjct: 176 FPNFYRRRAEEILTLSEAGLGNWLLGIAISSTMVGLFSGFGLWLLQINLVLVHAILAGLL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P +     I + +    +    + +   I   +    L P ++   + L    
Sbjct: 236 NFIPNIGPTASVIFPILIAVIDAPWKIVAILILYFIIQNVESYWLTPTVMAKQVSLLPAI 295

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           T    +   +  G+LGL +   L  ++     E +  
Sbjct: 296 TLIAQIFFAQMFGILGLLLALPLTVVVKTWLDELLFK 332


>gi|146311563|ref|YP_001176637.1| putative transport protein [Enterobacter sp. 638]
 gi|145318439|gb|ABP60586.1| protein of unknown function UPF0118 [Enterobacter sp. 638]
          Length = 344

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 112/337 (33%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILTGIRFAADIIVPFILALFIAVILNPLVQRMVRWRIPR-----VLAIS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+ +  L  Y    + EL   +       +   + L          E W +   
Sbjct: 67  LLITIIIMAMALLVTYLGTSLNELARTLPQYRSKLVIPLQQL----------EPWLQRAG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S++ L +       +  +    ++         L ++ ++  L    +    + Q +
Sbjct: 117 IEVSVEELLKYVDPNAAMTLVTGLLAQLSSAMTSIFLLLLTVVFMLVEVPQLPVKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 177 VR------PVEGMGAIQRALDSVSRYLVLKTAISIVTGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    ++A  +     I   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFSGFYDALIVLAGYLIINLVFGNILEPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIGLEQ 327


>gi|323169898|gb|EFZ55554.1| hypothetical protein ECLT68_5540 [Escherichia coli LT-68]
          Length = 326

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/329 (12%), Positives = 98/329 (29%), Gaps = 22/329 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + IIL  + F      P + AL I     P+    +  +        V+A   +M + ++
Sbjct: 2   LVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVSILMTIIVM 56

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ L  Y    + EL   +       +   + L  +   +       +   +      +
Sbjct: 57  AMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAM 116

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           +        +           +  L   L +  +                          
Sbjct: 117 TLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA----------------R 160

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P       +     +    +  T I+I  GLV  +      V      G++   +  IP 
Sbjct: 161 PVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPN 220

Query: 257 GA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               ++       +L+    + A  +     +   +    L P ++G  + L  L  F  
Sbjct: 221 IGSVLAAIPPIAQVLVFNGFYEALLMLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLS 280

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+     +G +G+ +   L  ++ +  ++
Sbjct: 281 LIFWGWLLGPVGMLLSVPLTIIVKIALEQ 309


>gi|157737199|ref|YP_001489882.1| putative permease [Arcobacter butzleri RM4018]
 gi|157699053|gb|ABV67213.1| putative permease [Arcobacter butzleri RM4018]
          Length = 361

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/329 (17%), Positives = 113/329 (34%), Gaps = 19/329 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +++ S   L     P+  A  I F    + +            L +IA    + + I  +
Sbjct: 22  LVIYSFNSLSSILTPIAIAFFIWFLINALANEIKKIPFIKQKILNIIAIPLSLFIIIYFM 81

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +  +    M EL S V   +     V   +S               +     L+   +
Sbjct: 82  IKVGAFITSSMIELSSIVSQLDSKINIVIEKIS-----------IMTSIDLKDPLEKFFQ 130

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
            F  ++ ++ I    S      +   L ++F++I   FF +   ++        +     
Sbjct: 131 EFNLSSALNKIFTAFSSIFSNLVQIFLYVLFLLIDQQFFNQKLNAL------FSKEENRQ 184

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             + I   V K +R+  L  TI+++  G +         +   +  G I  I+  IP   
Sbjct: 185 KAEHILTSVSKGVRTYILITTIVSLVTGFLTFIICQYFSLQGAILWGFIAFILNFIPTIG 244

Query: 259 PISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            I          L+   +  +   LF    I  F+V   + P L+G  + +        L
Sbjct: 245 SIIAVLIPTIFALIQFTDYSDIVGLFTALVIIQFVVGNIIYPKLMGNKLNISQFVVILSL 304

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           V      G +G+F+   +M ++ +I  + 
Sbjct: 305 VIWGAMWGTIGMFLAVPIMMILLIILSQF 333


>gi|209518137|ref|ZP_03266966.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209501441|gb|EEA01468.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 357

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 97/323 (30%), Gaps = 15/323 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y  +  F P++   +  +                      +     M L    + F    
Sbjct: 23  YIGRVVFVPIVFGGMAVYVVVDFTRLLQRIPVIGPRLPKQLRYGLSMFLIGAAIFFAIDM 82

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     LV+         + +   +S +          +   +    L          N
Sbjct: 83  LVANYDALVALAPRYQDSVLLMIHKISTLLHLESEPTWESLRRNMLTQL----------N 132

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +    +    + +D  + +++    L      G  ++            A  + + 
Sbjct: 133 IQAMVTGMLASLSSVIIDLFVIVLYASFLLVERRTFGDKLTNMT---ANSTNAARIRGVV 189

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT- 263
             + + I +     T++ +  G V   A    G+       ++TA++  +P    +    
Sbjct: 190 TDINRRIGAYLALKTVLGVLLGAVCWLAMRAVGLEFAGLWAILTALLNYVPYIGSVLAVM 249

Query: 264 -AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V + +L  G++ +   + +  +   F++   L P+L G  + L        +      
Sbjct: 250 FPVLMSVLQFGDLNSILVVLVTLSAIHFVIGNILDPYLTGNSLNLSPFAILASMAVWSAL 309

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G+ G F+   +   + +I+ E 
Sbjct: 310 WGVPGAFLAVPITVSMTIIFSEF 332


>gi|172035116|ref|YP_001801617.1| hypothetical protein cce_0200 [Cyanothece sp. ATCC 51142]
 gi|171696570|gb|ACB49551.1| hypothetical protein cce_0200 [Cyanothece sp. ATCC 51142]
          Length = 357

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 105/316 (33%), Gaps = 6/316 (1%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P+  S   +      F  +   + ++ L     L L    + +++ L+ K+    +  
Sbjct: 47  LSPLVGSVE-RMGLPRWFSVIFVYLLLVLLLTGIGLLLGPTIIAQLQRLLEKLPGYIEIL 105

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
               ++     G      L   +        +          +  +           L+ 
Sbjct: 106 GKQIQFFMTEKGFTEPEILEFLNRQFNLQSIVSWTFRSSQQLLIGVSGLTRGIVGGVLNV 165

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L     I+   +       +   + SL    +    K     V + +     G  +++ 
Sbjct: 166 FL----AILLSGYMLSGSQKLIDGIVSLFPTPWDQKLKDQVIPVSQRMGGYIQGRLLVSF 221

Query: 224 GEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
             GL +       G+    + LG I  +  +IP   P+  +  ++ + +    +    + 
Sbjct: 222 ILGLAVSLGLKFLGIGEFALGLGTIAGMTNLIPFFGPVLGSIPALIVAVAQGGWLFLWVL 281

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L   I   +    L P LVG  + +P L     ++ GV+ +G++G  I P  +A   V+ 
Sbjct: 282 LLFVIIQNLETYVLDPLLVGSSVNVPPLYQLLAVLSGVQLLGIIGALILPPWVAGAGVLL 341

Query: 343 KESIMAIKENKEKISS 358
           +   +  K   EK +S
Sbjct: 342 QNLYLTPKLEAEKENS 357


>gi|309800181|ref|ZP_07694366.1| membrane protein [Streptococcus infantis SK1302]
 gi|308116189|gb|EFO53680.1| membrane protein [Streptococcus infantis SK1302]
          Length = 223

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             N ++ +           +   L II   + L +   DG      L+            
Sbjct: 1   MQNILNSVTNSVGSVLSALVSTVLIIIMTPVFLIYLLLDGHKFLPMLERTILKRDKLNIS 60

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   +   I     G++I A+  G +    Y + G+   +   + + +  +IP   P  
Sbjct: 61  GLLTNLNTTISRYISGVSIDAVIIGCLAFIGYSMIGLRYALVFAIFSGLANLIPYVGPSI 120

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I   +  +        ++  I   +    L P +VGG +K+  +     L+    
Sbjct: 121 GLIPMIISNLFTDPHKMIIAVIYMLIIQQVDGNILYPRIVGGVMKVHPITILVLLLLSSN 180

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G++G+ +     +++  I K      + +KE     
Sbjct: 181 IYGVIGMIVAVPTYSILKEIAKFLARLYENHKEAQEVE 218


>gi|187934482|ref|YP_001886501.1| hypothetical protein CLL_A2312 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722635|gb|ACD23856.1| putative membrane protein [Clostridium botulinum B str. Eklund 17B]
          Length = 394

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 122/356 (34%), Gaps = 17/356 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES-----------STFLAV 64
           I+      +  +     P+L A++I +  +PI  S  +  + +                +
Sbjct: 36  ILGTTFDFIVKILSLIKPLLIAILITYILFPITRSIENFLKNNKIYKIKNNGTSRALSII 95

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKE--LVSKVVLANQHGIPV--PRWLSDIPGGMWAS 120
            + ++++ + +  L  +++    ++ +   +S +V      +        S        +
Sbjct: 96  FSYLAIIGIILGLLCGIYFMIGGQLSKNISISNIVEYISTYLNTHSLSNSSISLALENLN 155

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +   +       +       TN I  +  FA   G     + +++I  I  L      
Sbjct: 156 LPFLDAMEDHIVEVVNFIQNYITNNIGKMASFAVSIGSGVATFFIALIISIYLLKDHEYF 215

Query: 181 GFSISQQLDSLGEH-LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                +    +  +         +   + +V      G  + A   G++   A  + G+ 
Sbjct: 216 INLWDKLYYLIFRNSKIGKKINYVFSTIHEVFGRFIRGQLLEAFFVGVLSAIALSIVGID 275

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               +G+I  +  +IP   PI  T ++  + L+ G         +   I   I +  L P
Sbjct: 276 YAFVIGIIVGLSNLIPYVGPIVGTILAAIMGLLSGTPIKIVYAIIAMIIVQQIDNNLLAP 335

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            +VG  + L  + T   ++ G    GLLG+ +   L A   V++     +  + + 
Sbjct: 336 KIVGNSVGLHAVFTMLAILIGGNIGGLLGMLLAVPLAASFKVLFNNWYTSYMKKEN 391


>gi|328471641|gb|EGF42518.1| putative permease [Vibrio parahaemolyticus 10329]
          Length = 342

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 108/322 (33%), Gaps = 19/322 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LYF K    P++ +  +     P+ + F  K    +  + V  T+ V    +       
Sbjct: 25  ALYFAKPVLLPMVISTFVALLFSPLINYFEDKGLPRTITVVVTLTLLVSVSILGLAA--- 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  K+  +++    Q+       ++                     L+I S+  + 
Sbjct: 82  --ISEPAKQWWAELPSIVQNVSQEVNEVTK-----------ASSEHMNAPLEIASDMNID 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EMGNNTVFSLLKALATTTPTLLTQAMIVLFMVYFMLNHGRSLFRKSVSRLRGFSKQRQAV 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ + + K +      +T++  G GL +G  +++ G+      G    +M   P   P+ 
Sbjct: 189 ELVQALQKDLSRYIGTITLVNAGLGLCVGLVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 262 FTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 ++  L   ++     +     +   I  + + P L+G    L  L  F  LV  
Sbjct: 249 SMVSFGFVAYLQLDSVSFMLTVVSIYLLLNLIESQFVTPTLLGRRFNLNPLVIFMWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G +GL IG  L+  I ++
Sbjct: 309 GWLWGGMGLLIGVPLLVCINIL 330


>gi|126699888|ref|YP_001088785.1| hypothetical protein CD2273 [Clostridium difficile 630]
 gi|255101415|ref|ZP_05330392.1| hypothetical protein CdifQCD-6_11449 [Clostridium difficile
           QCD-63q42]
 gi|255307288|ref|ZP_05351459.1| hypothetical protein CdifA_11907 [Clostridium difficile ATCC 43255]
 gi|115251325|emb|CAJ69157.1| putative sporulation integral membrane protein [Clostridium
           difficile]
          Length = 353

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 109/333 (32%), Gaps = 1/333 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +I  I+ + L FL     P + + II     PI     +    + T ++++  +
Sbjct: 12  KFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIRLITNNTNLNRTLISIVILL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L I  L+         + ++  ++    +  I                 +    + 
Sbjct: 72  IFYGLCIFLLVSFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDASTPNVNLALIL 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++     + + +   + +    +        + L +I  +IA FFF  D   I   +
Sbjct: 132 GWDNISQSMMSLVASISTNAL-NAIASIASKTPAFMLKLIITLIASFFFTFDYQKIVNFI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         I       +        I+     + L     +  V +   + VI 
Sbjct: 191 LKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKVENAFTISVII 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A++ ++P     S     + + +     N     L   I + +V + L P +VG  I L 
Sbjct: 251 ALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEPKVVGHQIGLY 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   +  G +  G+ GLF  P+   +I  +
Sbjct: 311 PLITLMCMFVGAQLFGIAGLFGFPIAATIIKNL 343


>gi|28896865|ref|NP_796470.1| putative permease [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364667|ref|ZP_05777262.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
 gi|260877766|ref|ZP_05890121.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260895584|ref|ZP_05904080.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28805073|dbj|BAC58354.1| putative permease protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088588|gb|EFO38283.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308089745|gb|EFO39440.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308112608|gb|EFO50148.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           K5030]
          Length = 342

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 109/322 (33%), Gaps = 19/322 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LYF K    P++ +  +     P+ + F  K    +  + V  T+ V    +       
Sbjct: 25  ALYFAKPVLLPMVISTFVALLFSPLINYFEDKGLPRTITVVVTLTLLVSVSILGLAA--- 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  K+  +++    Q+       ++                     L++ S+  + 
Sbjct: 82  --ISEPAKQWWAELPSIVQNVSQEVNEVTK-----------ASSEHMNAPLELASDMNID 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EMGNNTVFSLLKALATTTPTLLTQAMIVLFMVYFMLNHGRSLFRKSVSRLRGFSKQRQAV 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ + + K +      +T++  G GL +G  +++ G+      G    +M   P   P+ 
Sbjct: 189 ELVQALQKDLSRYIGTITLVNAGLGLCVGLVFFVLGLEDPFLWGAFAGVMNFAPYLGPVI 248

Query: 262 FTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
             A   ++  L   ++     +     +   I  + + P L+G    L  L  F  LV  
Sbjct: 249 SMASFGFVAYLQLDSVSFMLTVVSIYLLLNLIESQFVTPTLLGRRFNLNPLVIFMWLVFW 308

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G +GL IG  L+  I ++
Sbjct: 309 GWLWGGMGLLIGVPLLVCINIL 330


>gi|255656255|ref|ZP_05401664.1| hypothetical protein CdifQCD-2_11304 [Clostridium difficile
           QCD-23m63]
 gi|296450306|ref|ZP_06892066.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296878718|ref|ZP_06902722.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
 gi|296260867|gb|EFH07702.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP08]
 gi|296430292|gb|EFH16135.1| sporulation integral membrane protein YtvI [Clostridium difficile
           NAP07]
          Length = 353

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 110/333 (33%), Gaps = 1/333 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +I  I+ + L FL     P + + II     PI     +    + T ++++  +
Sbjct: 12  KFTYVVLITSIVYIVLKFLLPLLMPFVISFIIASILRPIIKLITNNTNLNRTLISIVILL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +   L I  L+         + ++  ++    +  I                 +    + 
Sbjct: 72  AFYGLCIFLLISFGVKIFASVSDVFFRLPEIYKSSIQPTLNTLFSKIDASTPNVNLALML 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              ++     + + +   + +    +        + L +I  +IA FFF  D   I   +
Sbjct: 132 GWDNISQSMMSLVASISTNAL-NAIASIASKTPAFMLKLIITLIASFFFTFDYQKIVNFI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                         I       +        I+     + L     +  V +   + VI 
Sbjct: 191 LKQFPEKSQFMIINIKNSSINALLKLLKAYAILLSVTFIELLIGLTILKVENAFTISVII 250

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           A++ ++P     S     + + +     N     L   I + +V + L P +VG  I L 
Sbjct: 251 ALVDILPVLGTGSILTPWMIISLINGNINLAIGLLILYIIITVVRQILEPKVVGHQIGLY 310

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L T   +  G +  G+ GLF  P+   +I  +
Sbjct: 311 PLITLMCMFVGAQLFGIAGLFGFPIAATIIKNL 343


>gi|221639768|ref|YP_002526030.1| hypothetical protein RSKD131_1669 [Rhodobacter sphaeroides KD131]
 gi|221160549|gb|ACM01529.1| Hypothetical Protein RSKD131_1669 [Rhodobacter sphaeroides KD131]
          Length = 331

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/299 (12%), Positives = 77/299 (25%), Gaps = 20/299 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                + + ++ G                       +  V V+       L        +
Sbjct: 15  DVLLVIFAGVLFGVFLSAGGGLVQRVTGLQRGAGIALFIVLVLLALTGAFLAFAPAMFEQ 74

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L  ++  A +         S  P                     L      +  +  
Sbjct: 75  ADALARQLPPAFEDLRDRISAYSWGP--------------------TLLSRLAPSRLLSS 114

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
              FAS           +++ ++    +   D     + L +L          ++  I  
Sbjct: 115 DGGFASTAVSATFGALGNVVIILFIGLYTAVDPGLYRRGLRALLAPPLRPRGDEVLAIAD 174

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             +R    G  I     G++     WL G+P    LG+I A++  IP   P+     ++ 
Sbjct: 175 GTLRGWLGGQIISMTVVGVLTWLGLWLIGIPLAFILGLIAALLTFIPNIGPVLSAVPALL 234

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           L +         +              + P +    + LP        +      GL+G
Sbjct: 235 LALPEGAEQVGLVLAVFLTVQTFESYLVTPLIQKERVALPPALIISAQLLMGVLFGLMG 293


>gi|166713881|ref|ZP_02245088.1| transport protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 338

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 109/336 (32%), Gaps = 17/336 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  +    +  +L+  +    P++ A        PI                    +  +
Sbjct: 1   MVVLATLAVGYTLWAAQTIILPIMLAAFFALIGNPILRGLRKLYIPR--------FLGAL 52

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  + L       +            A Q    + R + ++   +  +    ++ +   
Sbjct: 53  LILCLGLAGTVTLAVQLAGPAAEWAQQAPQRMRQIARDVRNLTKPVMQANQAAENFARAA 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +      +    +D   +   R   +          +++  FFF   G S+ +   +L
Sbjct: 113 GGEGQRGVQIVRTQMDDPYKALVRTPKLAASVLA----VVLLTFFFMVYGESLQRHAIAL 168

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
             +     +  +I   + + +    L +++I    GLV     ++  +P    +  G + 
Sbjct: 169 LPNRQQQRFTTEIMLDIEREVSRYVLTISVINTLVGLVFAGMLYVLKIPLPEAILWGTVV 228

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A++   P   P+    + + +  +      ++    +       I  + + P ++G  + 
Sbjct: 229 ALLNFAPYVGPLIGVMLMLLMGFVEFRTTLSSLLPAILYLALHTIEGQVVTPIVLGRRMA 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  L    GL+      G++GL +   L+  I ++ 
Sbjct: 289 ISPLMLILGLMLFGWLWGMVGLLLAVPLLVCIKMVL 324


>gi|86133547|ref|ZP_01052129.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
 gi|85820410|gb|EAQ41557.1| protein of unknown function DUF20 [Polaribacter sp. MED152]
          Length = 343

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/353 (17%), Positives = 128/353 (36%), Gaps = 21/353 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             +  Q  +  +I+F  ++    L  + + VL A+ I           I K   +    A
Sbjct: 7   PKIIRQVFVLLLIVFFAVLIFTELIPYLSGVLGAITIYVLLRKWMVILIKK-NWNPDVAA 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++         ++P+  + +    ++ E V       +      R +    G   +S + 
Sbjct: 66  ILLMFLSFICILLPVTGIIFMLGEKIGEAVENSEEIARVVQNKIRTIESEYGYDLSSRIN 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T+ +S                   +I      F     +  + I  M   L++   +   
Sbjct: 126 TEEIS------------------TWISSNLETFAGSTFNIFIGIGLMYFILYYMLTNRRR 167

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +   L            K I      ++RS  +G+ ++AI +G++    + + G+     
Sbjct: 168 LKDSLYEYIPISN-KNLKIIGAESQAMVRSNAIGIPLVAIAQGIIALIGFLIFGIRDPFF 226

Query: 244 LGVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
             +I  I +MIP    +     V I  +  GN   A  + ++G + +   D  +R FL+ 
Sbjct: 227 WFIIVTIGSMIPFVGTLIGILPVFILSMSYGNTVGAWGILIYGLVVVGSTDNIIRLFLLK 286

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
               +  L T  G++ GV   G +GL  GP+L++L  V+ +          E+
Sbjct: 287 KLDNVHPLITLIGVIVGVPLFGFIGLIFGPLLISLFLVVVRIYKKEFGALIEE 339


>gi|92117758|ref|YP_577487.1| hypothetical protein Nham_2235 [Nitrobacter hamburgensis X14]
 gi|91800652|gb|ABE63027.1| protein of unknown function UPF0118 [Nitrobacter hamburgensis X14]
          Length = 395

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/342 (8%), Positives = 82/342 (23%), Gaps = 25/342 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++   +LV  +        + + +++G     I +               I  +++ 
Sbjct: 24  IGIVLFAALLVFAWEFAATLFLIFAGVLLGVALNAITNLLGRVVRLPHGLRLTIVCLALA 83

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                 ++        +   L + +     +                 + L     +   
Sbjct: 84  AALSGVVVLGGTTIADQTTVLSNTLKSQLVNLKAFLEKNGVDTSYFNLTNLNASSETSKA 143

Query: 132 S-------------------------LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
           S                            L       +    I     +  +  +    +
Sbjct: 144 SGTARASGPARASGAAKAEETPSTNVQHNLPSAGALASSGSAIVSQTLKLILGTVSAVGN 203

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              ++     F        + L  +      A    +   +   +    +   +      
Sbjct: 204 FFIVLFLGLCFAAQPTLYRKGLLGMAPAKHRAAATILVDRIGDTLERWLIAQMVTMAAVF 263

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           LV      + G+ S   LG+   ++A IP    +    + +   +          F+   
Sbjct: 264 LVTWIGLEIIGIQSSFILGIQAGLLAFIPTIGALLGGLIVVLASLASGWVAGASAFVLFL 323

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               +    L P +    + +P    F   +      G+ GL
Sbjct: 324 GVHALESYILTPIIQRQALDIPPATLFAFQILLGVVFGVWGL 365


>gi|313638619|gb|EFS03751.1| membrane protein YdbI [Listeria seeligeri FSL S4-171]
          Length = 379

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 113/352 (32%), Gaps = 19/352 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I V LY L+     +L   I  F    + +  + +       +
Sbjct: 36  EKLKENNTARRVLVFILIGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 95

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 96  VIVLYTLVALFLYVAIVHFLPILIDQISQLVDSLVKIYNNPPD----------------- 138

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 139 NAIAKWFVGFLKESNIEKYLQTGVDFIIVSLSGIGSVGLSFFLALILSLFFSLEKERVTS 198

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q L S    +F        +              +IA+   ++   A +L   P  +
Sbjct: 199 FTGQFLTSKVGFIFKE-AAFFGKKFVGTFGVVLEAQLMIALVNTIITTIALYLMDFPQLL 257

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G + +   + L   I   I    L P L+
Sbjct: 258 SLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGLQDVFYILLTVVIVHAIETYILNPKLM 317

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                LP   TF  L+      G+ GL +G  +   +  I        KE +
Sbjct: 318 SSKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILDVRNAEDKEKR 369


>gi|118591666|ref|ZP_01549062.1| hypothetical protein SIAM614_22022 [Stappia aggregata IAM 12614]
 gi|118435659|gb|EAV42304.1| hypothetical protein SIAM614_22022 [Stappia aggregata IAM 12614]
          Length = 375

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 104/338 (30%), Gaps = 15/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + +  +  +L   +  FAPV  ++++G    P       +        A    +
Sbjct: 30  RVSAVILCVIAVTAALDIGQVIFAPVCLSIVVGTIFAPPVERLS-RLGVPGWLSAGGMVL 88

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +             +  L           I    + S        + L     +
Sbjct: 89  LFIVFILTAGAAFVVPLSDWLDRLPLIWSRLQAQLISWQGFFSS------VASLQEDLRN 142

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  +  +    + ++ +  FA  F    + +  S  F ++      R    +S   
Sbjct: 143 AVGQKGGMQVSVEDNSAVESVFYFAPAFVAQVILFLASFYFFLLTGPHLRRAALQLSS-- 200

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +           R +   + +  + +++I  G G  +  + WL GVPS +  G++ 
Sbjct: 201 ----DGEGRRSIVTAFRTIETRLSTYLISISLINAGLGAAVALSMWLLGVPSPLLWGMMA 256

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIK 306
            ++  +    P     +   + +         L   L       I  + + P ++G  + 
Sbjct: 257 CVLNYVVYLGPAIMVLLMSAVGLATGNTPLAILTPPLTYLALNLIEAQFVTPTVLGRTMT 316

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L     F  +   +   G +G F+   L+ ++  + + 
Sbjct: 317 LNPFLVFLAIAFWIWLWGPIGGFVAVPLLLVVGTVLEI 354


>gi|283851774|ref|ZP_06369052.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
 gi|283572894|gb|EFC20876.1| protein of unknown function UPF0118 [Desulfovibrio sp. FW1012B]
          Length = 367

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 124/346 (35%), Gaps = 4/346 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +    +  + +    L  F   ++ AL++     P+ +             A   T+  
Sbjct: 11  FLLATFLAAVSIMATLLWPFRHAMVIALVLATLVRPLGAWLPRFMRARRLLAATTLTLLT 70

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +   ++PL  L      E    V       + G      +      +        +L   
Sbjct: 71  VLFVLLPLAGLLTLLTSEAVTFVQTAAAWFKAGG--LHDIVAWARTLPLPGWAKAYLVAS 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  E +   +G D    F    G    +  L +  +++ LF+   +G  ++++L  
Sbjct: 129 PIDLHKIEAWALASGGDIGLWFLWA-GKGVANIGLQLFVLVMFLFYLLAEGEFLTERLRR 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               L       I      V RS  LG    ++  GLV G   W+AG+   +   V    
Sbjct: 188 ASP-LRRDQEDAIIARFKAVSRSVLLGGLGTSLAIGLVTGVGLWIAGITPFLWGAVAVIA 246

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +   G  +      IYL+  G+   A  L L+  + +  VD  +RP  + G  ++  +
Sbjct: 247 SLIPVVGLSLILIPSIIYLVATGSWKMAIFLALYWLLVINSVDNVVRPLFMRGQARMSLV 306

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             F  ++GG+   G LGL  GP+ +++  + +   + A  E +++ 
Sbjct: 307 WVFVSILGGILLFGPLGLLYGPLALSISFLFFDIFLEAQGETEDRQ 352


>gi|126661462|ref|ZP_01732518.1| hypothetical protein CY0110_29024 [Cyanothece sp. CCY0110]
 gi|126617254|gb|EAZ88067.1| hypothetical protein CY0110_29024 [Cyanothece sp. CCY0110]
          Length = 357

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 105/316 (33%), Gaps = 6/316 (1%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P+  S   K      F  +   + ++ L     L L    + +++ L+ K+    +  
Sbjct: 47  LSPLVGSVE-KMGLPRWFSVIFVYLLLVLLLTGIGLLLGPTIVAQLQRLLEKLPGYIEIL 105

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
               +    +                 +   + S           +    S      +  
Sbjct: 106 GQQIQ----LFMTEKGFTEPEILEFLNRQFNLQSLVSWTFRSSQQLLIGVSGLTRGIVGG 161

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L++   I+   +       +   + SL    +    K     V + +     G  +++ 
Sbjct: 162 VLNVFLAILLSGYMLSGSQQLINGIVSLFPIPWDEKLKDQVVPVSQRMGGYIQGRLLVSF 221

Query: 224 GEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
             GL +       G+    + LG I  +  +IP   P+  +  ++ + +    +    + 
Sbjct: 222 ILGLTVSLGLKFLGIGEFALGLGTIAGMTNLIPFFGPVLGSIPALIVAVAQGGWLFLWVL 281

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L   I   +    L P LVG  + +P L     ++ GV+ +G++G  I P  +A   V+ 
Sbjct: 282 LLFVIIQNLETYVLDPLLVGSSVNVPPLYQLLAVLSGVQLLGIIGALILPPWVAGAGVLL 341

Query: 343 KESIMAIKENKEKISS 358
           +   +  K   EK +S
Sbjct: 342 ENLYLTPKLEAEKENS 357


>gi|88809887|ref|ZP_01125393.1| hypothetical protein WH7805_10938 [Synechococcus sp. WH 7805]
 gi|88786271|gb|EAR17432.1| hypothetical protein WH7805_10938 [Synechococcus sp. WH 7805]
          Length = 359

 Score = 95.4 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 95/296 (32%), Gaps = 13/296 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L+A +I F           +         V+ T+  +   +   + L    +
Sbjct: 30  LAPFPGLFLTAALIAFLLDIPCVWLTGR-GLPRWMAIVMVTLVTISALVFAGITLVPLLI 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++ +             L  +         +    S   +              
Sbjct: 89  DQLGQLINALPGLLSEAEGWITSLQSLADARGLPSEFGDLSSDLLTR--------AGRVA 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I +         L   ++ + +++   FF   G SI+  L       +      ++  
Sbjct: 141 SQISQRLLGILGATLGTTINTVIVLVLAVFFLLGGRSIAAGLARWLPTDWREL---VTST 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+   +     + +  +P  V   V+     +IP  + ++  AVS
Sbjct: 198 LSRTFRGYFAGQVLLALILAVGQIVVFTVLKIPYGVLFAVLIGFTTLIPYASALTIIAVS 257

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             L    +      + +   +   +VD+ ++P L+G  + L        L  G + 
Sbjct: 258 GLLA-FQDPKTGLEILVAAILVGQLVDQVIQPRLMGSIVGLQPAWLLIALPIGAKA 312


>gi|312143377|ref|YP_003994823.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
 gi|311904028|gb|ADQ14469.1| protein of unknown function UPF0118 [Halanaerobium sp.
           'sapolanicus']
          Length = 348

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 102/313 (32%), Gaps = 10/313 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
             +    P L  + I +   P+        +       ++   +++ L      F     
Sbjct: 36  VFQLVIIPSLLGIFIYYLLRPLVRFLHKYIKYK-NLSILLTITALLILISFITYFAGNII 94

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             E++ L+  +       I +   +SDI    +  EL          ++     F +  G
Sbjct: 95  YTEIQRLIRFLSDYENIAIRISELISDIEEIGFLEEL---------DIESRLIQFARNVG 145

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                                +      + +F +D   + ++L  L         K I +
Sbjct: 146 NRLTDYDFVGIFDSLAQMFTIVFLTPFIVIYFLKDDKLLFEKLIKLVPKDNQETVKVIFK 205

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + ++         ++    G ++   Y   G+P+ + L  I AI ++IP   P    + 
Sbjct: 206 KIDRIFGVYMPSQLLVGAISGTIMFIGYTFIGMPNALGLSFILAIASIIPVIGPAIGVSP 265

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++++ +  +      + +   I     +  +RP L GG +    +   F +V      G+
Sbjct: 266 AVFIALTTSWVMLIQVAVLMTIVQLFENNVVRPILQGGMLNTHPIAIIFSIVIATLLFGI 325

Query: 326 LGLFIGPVLMALI 338
           LG  +   +   I
Sbjct: 326 LGALVAVPIYVSI 338


>gi|187777381|ref|ZP_02993854.1| hypothetical protein CLOSPO_00937 [Clostridium sporogenes ATCC
           15579]
 gi|187774309|gb|EDU38111.1| hypothetical protein CLOSPO_00937 [Clostridium sporogenes ATCC
           15579]
          Length = 351

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 104/326 (31%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I  I  +  +    +  P + A +         +  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTISFLIFFKTLPYTLPFVLAFLFALALKKPANYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LIFFSIIITLLFWGINSLVHEVIDFGKNTQTYLYSHEDQISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D     
Sbjct: 129 SIEKTIGNSFSKISNIIVFITSRIVSSFIGLLTSIPYILMLILFTLLSTYFFTKDITKHD 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +  +   + + +I     K++    L    +           +++  +   +   
Sbjct: 189 NKISKIIFNEHSSKFPQIYLESKKMLSGYILSYLTLIGITFFETLIVFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +I AI   +P     S       + I         +  L   + + I+ + L P L+   
Sbjct: 249 IIAAIADFLPILGIGSIYVPLALIHILVYKNYVVGIGLLISYVAVSIIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPVSVLAAIFIGLKANGISGMFF 334


>gi|323484056|ref|ZP_08089426.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
 gi|323402498|gb|EGA94826.1| sporulation integral membrane protein YtvI [Clostridium symbiosum
           WAL-14163]
          Length = 372

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/349 (14%), Positives = 108/349 (30%), Gaps = 3/349 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +I  ++++      G   P   AL +     PI      K       L+ I      
Sbjct: 16  AYILIAAMLVLLTILTAGLLMPFWIALFLSAILQPITRLLSGKLGLKKKGLSTIVLFLFY 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    L+F          +L        +  I               S +  +      
Sbjct: 76  LLLFCILIFGIAEVTNLFGDLFQSFPDYYKDTIVPALGSLGNSIEQIFSIIPNEFRPDMA 135

Query: 132 SLKILSETFL---KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            L+I   T++    +    +   FA      F    LS++  I+  +F      ++   L
Sbjct: 136 ELQISIMTWIEKIVSAISQYGLTFAGNVISGFTSSILSVLMTILLSYFITVQYDTVVAFL 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     +   I  ++   +        I+     + L     +    + + + +  
Sbjct: 196 KCQLPDKIRTFGADIKPLLKNSVVKYLKATLILMFITFIELAVGLSIIKGSNPIGMALGI 255

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           AI   +P           I + +    +      L   I + I+   L P ++G  + + 
Sbjct: 256 AIFDALPVFGTGGIMIPWIIIELLSGNYALAGGLLILYIIITIMRNILEPKILGSQLGIN 315

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +     ++ G R +G+LG+   P+   ++ V+     + + +N  K++
Sbjct: 316 PIVVLLAVLIGGRLLGVLGMIFFPITAYVLTVLHDAGKIKLYKNPPKLN 364


>gi|309389223|gb|ADO77103.1| sporulation integral membrane protein YtvI [Halanaerobium
           praevalens DSM 2228]
          Length = 353

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 56/323 (17%), Positives = 108/323 (33%), Gaps = 2/323 (0%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P + A +I     P+   F  K      F+ +I  + V+ + +  ++     G LE+
Sbjct: 30  YFTPFIIAAVIASLINPVVDYFNKKIPIHRGFIVIIVLILVVVILVTMIIIGGAQGYLEL 89

Query: 90  KELVSKVVLA--NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
             L+  +         I      +     +  +   +  +    +  +        + + 
Sbjct: 90  NRLLRNLPDYRSIDSQIKWLSVQNQQLETLIQNWEVSDAVRDAINSNLQLLYNGIRDTLI 149

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +      F        + +    I  FF  RD   I + L ++           +   +
Sbjct: 150 SVINSILEFLTKLPSVFMILFIAFIGTFFISRDRDKIKEFLVNIFPLAIQPKIANVFTQL 209

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
                     M I+    G+V G    L G    + +GV  A++ +IP   P       I
Sbjct: 210 NSSAVGYIRAMLILITISGIVAGIGVKLLGNQYALIVGVTAAVLDLIPIIGPALLFYPWI 269

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + I    F+         + L  +       ++G  + L  L T   L  G R +G +G
Sbjct: 270 IVSIIFGNFSQAFSLFILHLFLAGIRSASEGKIMGKSLGLHPLATMIALFSGYRILGAIG 329

Query: 328 LFIGPVLMALIAVIWKESIMAIK 350
             +GP  + LI  I    ++ IK
Sbjct: 330 FVVGPTFLVLIKAIVDSDLIDIK 352


>gi|227891477|ref|ZP_04009282.1| integral membrane protein [Lactobacillus salivarius ATCC 11741]
 gi|227866624|gb|EEJ74045.1| integral membrane protein [Lactobacillus salivarius ATCC 11741]
          Length = 351

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 119/355 (33%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + + R+ ++  ++  LY  +   + +L   I  F    +  +   K +  S  +
Sbjct: 7   QRFLGNERLRRFTVLLFLVGVLYLARSMMSLILLTFIFSFLVISLNDAIRKKIDIPSKLI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  + ++    + +       +++ + LV+ +V    H       + ++     +   
Sbjct: 67  VIIVYLLMIGGIYLAITIYLPKLVIQTENLVNYIVKFYNHPPKGTNDVINMVTQYISQSD 126

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K +    S+ +     + T G+ FI      F                   FF  D  
Sbjct: 127 IMKQMRGGMSIIVKYLANIGTMGMTFIMALLLSF-------------------FFTIDKD 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG---MTIIAIGEGLVLGSAYWLAGVP 239
            + +   S  +  +  ++  +       + S  +      IIA+    +  +      +P
Sbjct: 168 DLFKFSKSFLKGPYSWFFNDVYYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMP 227

Query: 240 SHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              +L ++   M+MIP    I     + +     G +     + +   +   +    L P
Sbjct: 228 QLFSLALLIFFMSMIPVAGVIISAIPMMLIGYTVGGVKYIIYIIIMLCVVHALEAYVLNP 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L+    +LP   TF  L       G+ GL +G  +   +  I       I+  +
Sbjct: 288 KLMSSRTELPIFYTFVVLYVSEHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 342


>gi|260435172|ref|ZP_05789142.1| hypothetical protein SH8109_0741 [Synechococcus sp. WH 8109]
 gi|260413046|gb|EEX06342.1| hypothetical protein SH8109_0741 [Synechococcus sp. WH 8109]
          Length = 361

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/306 (12%), Positives = 91/306 (29%), Gaps = 13/306 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F++   L     F    L+A +I F           +      +  V   +  + L + 
Sbjct: 21  AFVLKGLLVQFAPFPGLFLTAALIAFLLDLPCRWLAQR-GLPRAWAIVSVVLVTLGLLVW 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L    + ++ +L+S                            +    S   +    
Sbjct: 80  AAVALVPLLIEQLSQLISTSPSLLTAAEQWIDRGQLWALDHGLPADFADLSSDLVAQF-- 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +     + +         +   ++++ +++   F       I   L       +
Sbjct: 138 ------SRLATQLSQRLLGLLGATVGTTINVVIVLVLAVFLLLGADPIVDGLARWLPDRW 191

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +   + +  R  F G  ++A+         +    +P  V   V+     ++P 
Sbjct: 192 RDL---VKMTLERTFRGYFAGQVVLALILSGGQLLVFTALNIPYGVLFAVLIGFTTLVPY 248

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            + +S  +VS  L ++ +      L     +   IVD+ ++P L+G  + L        L
Sbjct: 249 ASAVSIVSVSAVLAVQ-DPRTGLELLAAAIVVGQIVDQVIQPRLMGSIVGLQPAWLLIAL 307

Query: 317 VGGVRT 322
             G R 
Sbjct: 308 PIGARV 313


>gi|149278254|ref|ZP_01884392.1| hypothetical protein PBAL39_11872 [Pedobacter sp. BAL39]
 gi|149231020|gb|EDM36401.1| hypothetical protein PBAL39_11872 [Pedobacter sp. BAL39]
          Length = 350

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/339 (17%), Positives = 127/339 (37%), Gaps = 20/339 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   +I+ +  +  Y L+G F  +LS L++     P +   + +K+ +    AV+  
Sbjct: 9   RNTINLVIIIALGCLIAYSLQGIFGSILSTLVMFTILRPAFMYLVEEKKMNKRVAAVLLL 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  + + I+P   L    + ++ +L    +        +   +          E      
Sbjct: 69  VVSVVVIILPFYALSTMVIEKIADLQKDQIYFKNLLFKLKHLIPVGGDFQNLIEDGM--- 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                              +++            +  L ++ M   L+F   +       
Sbjct: 126 ---------------KKAGNWVTELFPSLISGAFNTVLGLLLMYFLLYFMLVERERFESS 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L            ++ +  +     +  LG   IA+ +G ++  A+++   P  +  GVI
Sbjct: 171 LLKYAPFR-EQNAQRFALEMRNTTYANVLGQGFIAMVQGSLVSLAFYVLDYPDPLFWGVI 229

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T  ++ +P   P I F   +I  ++ GN   A  + ++G + +  +D  LR  +      
Sbjct: 230 TTFISFVPVLGPPIVFVPAAIIQMLNGNNVAAWAMLIFGFVVIINIDNVLRFMIAKKVGN 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  + T  G+V G+   G+LGL  GP+L++   ++ K  
Sbjct: 290 IHPIITVIGVVIGIPLFGILGLVFGPLLLSYFILLVKIY 328


>gi|126656529|ref|ZP_01727790.1| hypothetical protein CY0110_22537 [Cyanothece sp. CCY0110]
 gi|126622215|gb|EAZ92922.1| hypothetical protein CY0110_22537 [Cyanothece sp. CCY0110]
          Length = 361

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 112/347 (32%), Gaps = 11/347 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + + +      K  F     A  +             K   S  +  ++  +S  
Sbjct: 23  IVVLNIIVFIFVFQQFKSVFYSFTIASFLALLLHHPIIFLEKKLGLSKLYAILLVFLSFT 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F V  + L    +++   L+S +    Q        +S       +       ++   
Sbjct: 83  LIFSVIGIILVPIIVIKFSALLSILPDWIQSTSIKINNISYWFNSNNSLVDSQTIITKLT 142

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                          +FI         IFL   L+I F+     F              L
Sbjct: 143 DSFQDQLQNFIQGFPNFIFGTIGNLLSIFLIAVLTIFFLFYGNSFLKNC----------L 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    + I + + +   S  L   +++    +V+    +L   P  +  G+     
Sbjct: 193 HSWFSSDVGEMIHKTLYRNFNSYLLNQVVLSTVLTIVMIPTLYLLKAPFALLFGLTIGAF 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P GA +S  AVSI L   GNI+    + L   I   I++  L P L+G    L  + 
Sbjct: 253 GLVPFGATLSILAVSIILF-LGNIWIGLRVLLVLIIIDQIIENILPPRLLGKLTGLNPII 311

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             F ++ G      +GL     + A    ++     +  +  EKI S
Sbjct: 312 ILFSVMVGATLGDFVGLITAVPIAATTKSLFNHWSQSNTQELEKIFS 358


>gi|283833213|ref|ZP_06352954.1| permease, PerM family [Citrobacter youngae ATCC 29220]
 gi|291070846|gb|EFE08955.1| permease, PerM family [Citrobacter youngae ATCC 29220]
          Length = 344

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 106/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    + K          +  V
Sbjct: 12  KIVIMLGMLVIILSGIRFAADIIVPFILALFIAVVLNPVVQRMV-KLRIPRVLAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLKNLEPWLQRAGIGVSVDELVKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             +      +       +   SI  +++ + F   +   +  +L
Sbjct: 131 ------------------NAAMTLVTNLLAQLSNAMSSIFLLLLTVVFMLLEVPQLPGKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P       +     +    +  T I+I  GLV         V      G++ 
Sbjct: 173 QQM--MSRPIEGMAAIQRAIDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+   +++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFSGLYDALVVLAGYLVINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|282900524|ref|ZP_06308468.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
 gi|281194577|gb|EFA69530.1| protein of unknown function UPF0118 [Cylindrospermopsis raciborskii
           CS-505]
          Length = 320

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 101/318 (31%), Gaps = 12/318 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             ++ +     +  A I+ F           K   + T+  +I  V  + L ++    L 
Sbjct: 2   LFHYFQHPITILSIAAILAFLLNYPVQLLE-KARITRTYSVIIVLVITLTLLVILGFTLV 60

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  +L+  +             L  +           K L    S+         
Sbjct: 61  PMLVEQTTQLLKNIPDWVTSSQENLSRLQVL--------ARQKRLHIDFSVVSSQINASV 112

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            N +  I   A  F    L   L+I+ +++  F+    G  +   L +           K
Sbjct: 113 QNILQQIASGAVGFAGTLLSGLLNIVLVVVLAFYMLIYGDRLWSGLINQLPSYIGLPLSK 172

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             ++      + FL   ++A+   + L   +    VP  +   +I  I  ++P       
Sbjct: 173 SLQL---NFHNFFLSQLLLALFMVIALTPIFLFLRVPFALLFAIIIGISELVPVIGATLG 229

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +   L+     + A  + +   I   I D  L P L+G    L  L  F  ++ G   
Sbjct: 230 IGLVTLLVSLQTWWLAFPVAMVAIIIQQIRDNILAPKLLGNFTGLNPLWIFIAILMGFEI 289

Query: 323 MGLLGLFIGPVLMALIAV 340
            GLLG  +   +   I  
Sbjct: 290 GGLLGTLVAVPIAGTIKS 307


>gi|159026200|emb|CAO86358.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
 gi|159029535|emb|CAO87687.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 392

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 115/343 (33%), Gaps = 7/343 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +  + +     + +  F  +L A ++ F      +    ++       A++ ++  +
Sbjct: 36  LIVLNAWALSAIFGYFESLFVILLIAAVLSFLLGYPVTWLE-RQGLKRGLAAIVVSLITI 94

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F+   + L      + ++ V+++      G      L      M      +       
Sbjct: 95  LIFVAVGITLVPLVFTQAQQFVNRLPEWLDSGQRQLMQLDTKIDTMNLPIPIS--FDGVI 152

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +                    A    +  +   L ++  II  F+       I + +   
Sbjct: 153 AQFNSRLGAELQILAGRSVNLALNLTVFTVVRVLDVLLTIILTFYLLLHSPDIWRSIIQW 212

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   +    R+     ++ F+G  I A    L L +A+    VP  +  G++   M
Sbjct: 213 LPKPVQQPFSLTLRL---SFQNYFVGQVICATCMALGLVTAFLSIKVPFGLLFGLLIGTM 269

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           A+IP G  +    V+  L ++ +I  A  +     +   IV+  + P ++G    L    
Sbjct: 270 ALIPFGGTVGIVTVTALLALR-DIGLALQVLAVAVVVQQIVENGIAPRILGSVTGLNPFW 328

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               ++ G R  GLLG+ +   +  +I    +       E  +
Sbjct: 329 VLVSVLTGARVGGLLGVIVAVPMAVMIKEALEVIRQVTPEETK 371


>gi|148240639|ref|YP_001226026.1| permease [Synechococcus sp. WH 7803]
 gi|147849178|emb|CAK24729.1| Predicted permease [Synechococcus sp. WH 7803]
          Length = 359

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 96/296 (32%), Gaps = 13/296 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L+A +I F          S+         V+ T+  + L +   + L    +
Sbjct: 30  LAPFPGLFLTAALIAFLLDIPCVWLTSR-GLPRWLAIVMVTLFTISLLVFAGVTLVPLLI 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++ +             L  +         +    S   +              
Sbjct: 89  DQLGQLINALPSLLNQAEGWITGLQSLAEARGLPSEFGDLSSDLVT--------RAGRVA 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             I +         L   ++ + +++   FF   G SI+  L       +      +   
Sbjct: 141 SQISQRLLGILGATLGTTINTVIVLVLAVFFLLGGRSIAAGLARWLPTAWREL---VIST 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+   +     + +  +P  V   V+     +IP  + ++  AVS
Sbjct: 198 LSRTFRGYFAGQVLLALILAMGQIVVFTVLKIPYGVLFAVLIGFTTLIPYASALTIIAVS 257

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             L    +      + +   +   +VD+ ++P L+G  + L        L  G + 
Sbjct: 258 GLLA-FQDPKTGLEILVAAILVGQLVDQVIQPRLMGSIVGLQPAWLLIALPLGAKA 312


>gi|239826942|ref|YP_002949566.1| hypothetical protein GWCH70_1491 [Geobacillus sp. WCH70]
 gi|239807235|gb|ACS24300.1| protein of unknown function UPF0118 [Geobacillus sp. WCH70]
          Length = 340

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 105/343 (30%), Gaps = 19/343 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R +I  I++  LY ++     +L   I  F    +      +   +   + ++    V+ 
Sbjct: 16  RIVIFSILIFILYLVRSILNIILLTFIFSFLMNGLVDFISKRIRINRKIIVLLLYAVVVS 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + +  ++      + E+ +L+ ++               +I       +L    ++   +
Sbjct: 76  ILVYGVVKYLPVVINEISQLIKQLTEFYLKPKD------NIVFNYIIEQLKQYEITTYLN 129

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +       ++      +      +           +     F Y    S   +L    
Sbjct: 130 FGMTYLIKYFSDISSIGLQILLALILSLFFLLEKERIISFTNRFKYSKISSFYDEL---- 185

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                   +   +   +          +IA    ++  +  W+ G P    LG++   + 
Sbjct: 186 --------EYFGKKFARTFGKVIEAQFVIATINMIITVACLWMMGFPQLFGLGILIFFLG 237

Query: 253 MIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP    I     +       G +     + +  A+   +    L P L+     LP   
Sbjct: 238 LIPVAGVIISLFPLCFIAYSIGGVMKVVYVLIMIAVVHALEAYVLNPKLMSSKTNLPVFY 297

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           TF  L+      G+ GL +G  +   I  +     +  K + E
Sbjct: 298 TFIVLIFSEHFFGVWGLILGIPVFVFILDVLGVKTVQGKRDDE 340


>gi|58039782|ref|YP_191746.1| putative permease [Gluconobacter oxydans 621H]
 gi|58002196|gb|AAW61090.1| Putative permease [Gluconobacter oxydans 621H]
          Length = 365

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 67/353 (18%), Positives = 137/353 (38%), Gaps = 3/353 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                ++  +   I++ +++ LK F    + A+ I  T+WP+     +    S      +
Sbjct: 12  NTRSVLIALLASGIVISAIWILKPFLPATIWAVTIAVTTWPMLRRLQTFVGNSRRVAVSL 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  M +FI+PL            ++++ V       + +P     +            
Sbjct: 72  TILIAMLVFILPLWLAITTVSSHFGDIIALVSS--SSTLHIPDEPPWMGRLPLVGPHIAP 129

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q ++            + +      +   F    L  I  ++ L        S  
Sbjct: 130 FWDRMQHMQFPEMVRQVIPAPETLIHTFLAYAGSFSILALQFILTLVILGVLLMRAESAI 189

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
              D+L   L     K++ ++    IR    G+T+ A+ E  V G    LAG P    L 
Sbjct: 190 AVADTLVTILAGNRGKEMLQLAAYTIRGVAFGVTVTAVVESAVAGIGLKLAGAPWVSILT 249

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            +T ++ ++  G  ++     I++     +  A  L +   I   I+D  LRPFL+    
Sbjct: 250 AVTFMVCLLQAGPGVTLIPAVIWVYFDRGLAPAALLLV-VTIITIIIDNVLRPFLIRKQA 308

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +P +    G++GG+  +GL+G+FIGP+++++   + K  I   ++    +S+
Sbjct: 309 DIPLILIMLGVIGGLGGLGLVGIFIGPLILSVAYTLTKSWISDSRQTPPSVST 361


>gi|212639688|ref|YP_002316208.1| putative permease [Anoxybacillus flavithermus WK1]
 gi|212561168|gb|ACJ34223.1| Predicted permease [Anoxybacillus flavithermus WK1]
          Length = 372

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 86/319 (26%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +   +I+  I++  Y++     P+L A I      P       +         ++
Sbjct: 25  IPKRSVYMILILLAIVLLTYWVAPIAVPILFAFITAIFLEPAVKVAQQRIGFKRQSATLL 84

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                     +   F+    + E         +     I     L               
Sbjct: 85  VFSLFTLFMFLSGYFIITKIVTEAFHFFRHSPMYLNEMIAGWNELVARWYKQTEKLPPFV 144

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  + +                  S        + ++ +  +I LF F  D   I 
Sbjct: 145 VAELSHQVDLFLTKLKTQLTASLSFHKVSALVANVPTFLINFLVYLITLFLFMHDLPKIR 204

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + S            +   +  V+   +    ++++    V      L      +   
Sbjct: 205 EAIFSHLTEETKEKVHFMLSRLSYVVFGFWKAQFLVSLIIFAVSLVGLLLITPKVALFTA 264

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            I  ++  IP    I   A                      + L I+ +T+ P ++G  I
Sbjct: 265 FIIWVIDFIPIIGSIIVMAPWAIFHFVTGDTVLATKLSILGVILLILRRTIEPKVMGAHI 324

Query: 306 KLPFLPTFFGLVGGVRTMG 324
            L  L T   +  GV+ MG
Sbjct: 325 GLSPLATLISMYLGVKMMG 343


>gi|222479371|ref|YP_002565608.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452273|gb|ACM56538.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 345

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 113/325 (34%), Gaps = 15/325 (4%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            +   +L  +++ +  +P+            T  A++  +  +   ++P+++L    + +
Sbjct: 34  PYLQFILFGVVLAYILFPVQQRAEQH--VRPTIAAIVIVLGALLFVLIPIIYLLTIAVQQ 91

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              +VS V         +   L      +    L+  +                   +  
Sbjct: 92  SLRVVSAVRNGQIDVASIEELLESTGYRIDLVALYESN------------QERIATSLQE 139

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A           + +   +  LF   RDG  +   +  +          ++   + 
Sbjct: 140 VTSGAIDLAGSLPGLFIGLTITLFVLFALLRDGEQLVAWVQWVLPVD-EDILDELREGLD 198

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           +++ ++ +G   +A  +  +LG    +AG+P+ + L V+T ++ ++P          +  
Sbjct: 199 QLMWASVVGNVAVAAIQAALLGVGLAIAGLPAVIFLTVVTFVLTLLPLVGAFGVWVPAAM 258

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L+      A+       + +   D  LRP L+G            G+ GG+   G +GL
Sbjct: 259 YLLAVGRPIASAAIAVYGLLVTFSDTYLRPALIGRTGAFNSAIIVIGIFGGLVVFGAVGL 318

Query: 329 FIGPVLMALIAVIWKESIMAIKENK 353
           FIGPV++    ++            
Sbjct: 319 FIGPVVLGGAKLVLDCFAREHTGEP 343


>gi|303327143|ref|ZP_07357585.1| putative membrane protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863131|gb|EFL86063.1| putative membrane protein [Desulfovibrio sp. 3_1_syn3]
          Length = 368

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 116/344 (33%), Gaps = 23/344 (6%)

Query: 32  APVLSALIIGFTSWPIYSSFISK---------------------KEESSTFLAVIATVSV 70
             +  A      + P Y     +                        S          ++
Sbjct: 26  ITIFMAACFSCLTLPFYRRLRQRASAWRVRLERREPDSRGRRFLIRFSHHMPLCSYIAAI 85

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
                VP+  L      +    ++++     +   +P    +       S      +   
Sbjct: 86  FSGLFVPIAILALLVSPQAVAGLARLRELQANNFQLPPQWVEHIQHWRLSLTEYPSIEKA 145

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  + +   L  + +  +   +  F    +    +    +     F      I +    
Sbjct: 146 VNDFLHNLDTLFGDAVTMLVSRSFGFLGGTMTAFWTTFLFLTLTVLFTVYSRRIRKVTCR 205

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +  HL  A  ++    + + +R   LG+ ++A+ +G + G  + +AG       G++  +
Sbjct: 206 IF-HLPQALLRRFISAIHRALRGIMLGIVLVALAQGFLCGIGFAVAGFNQPAFWGMLATL 264

Query: 251 MAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +A IP     + +  + + L   G    A  L LWG + +  VD  LRP  +   IK PF
Sbjct: 265 VAPIPVVGTALVWLPLCLSLWFTGKTMAAVGLALWGMLAVAGVDNVLRPLFLRQGIKAPF 324

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                 ++ G+ + G +GL  GPVL+A      +E+    + ++
Sbjct: 325 FVLILAILCGLASFGPVGLIAGPVLLAFAMQAVEEANYFYRTHE 368


>gi|315302384|ref|ZP_07873255.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
 gi|313629240|gb|EFR97502.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
          Length = 348

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 113/351 (32%), Gaps = 19/351 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +       R ++  +I + LY L+     +L   I  F    + +  + +       + 
Sbjct: 6   RLKENNTARRVLVFVLIGMVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLIV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++    V     + ++      + ++ +LV  +V    +                     
Sbjct: 66  IVLYTLVAAFLYIAIVHFLPILIDQISQLVGSLVKIYNN-----------------PSDN 108

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           T        LK  +       G+DFI    S  G + L + L++I  +       R    
Sbjct: 109 TVVKWVVGFLKESNIQKYLQTGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTSF 168

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             Q L S    +F        +              +IA+   ++   A +L G P  ++
Sbjct: 169 TGQFLASKVGFIFKE-AAFFGKKFVATFGVVLEAQLMIALVNTIITTIALYLMGFPQLLS 227

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L ++  ++ +IP    I      + +    G   +   + L   I   I    L P L+ 
Sbjct: 228 LSIMVFVLGLIPVAGVIISCVPLVLIAYTVGGFQDVFYILLTVVIVHAIETYILNPKLMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               LP   TF  L+      G+ GL +G  +   +  I        KE +
Sbjct: 288 SKTNLPVFYTFIVLIFSETFFGVWGLIVGIPVFVFLLDILDVRNAEDKEKR 338


>gi|325125970|gb|ADY85300.1| permease [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 377

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 84/250 (33%), Gaps = 1/250 (0%)

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
           L  +       +       +     +  + +  +  + ++ +   R      D+   +IF
Sbjct: 124 LDSLESLYDQLKAQYSSFINEILAYLQKQGWSTSGLVSYMQKGVGRVTGFLSDFFFGVIF 183

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I  L+   R      + L +L         K       +       G  I A   GL++
Sbjct: 184 AIYFLYDGQRIAAYWKRNLGTLLNKKVIKGIKLFLADADRAFSGYIRGQIIDAFIVGLLV 243

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIE 288
             A  +A VP  + +G++T +  +IP   PI    + I          A  +  +   + 
Sbjct: 244 SLAMLIAKVPYGLLIGLVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLI 303

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I    L   L+   I +  L     ++ G    G +G+ I   + AL+   ++  I  
Sbjct: 304 QAIDGNILNHKLLSSAIHIHPLYVIACVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAY 363

Query: 349 IKENKEKISS 358
            ++  EK   
Sbjct: 364 RQKQLEKSKE 373


>gi|283769056|ref|ZP_06341962.1| putative membrane protein [Bulleidia extructa W1219]
 gi|283104413|gb|EFC05790.1| putative membrane protein [Bulleidia extructa W1219]
          Length = 365

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 103/329 (31%), Gaps = 12/329 (3%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +   F P +    I F           K          +    V+    + +  L     
Sbjct: 47  MWSIFKPFVYGFSIAFIFAHPIRWLEQKS-IPKKIAVFLVYGLVLLALFLLVANLIPVLT 105

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
           + +  +++ V+ A                 +         +      ++ S   L     
Sbjct: 106 VRLSAMINSVISAVNEL------YVRYSHYLSNDSGTLAVMVRAAIRQLSSLQNLIPGVT 159

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +P   +    + + +  S +  +   F +     ++S   + +          +++  
Sbjct: 160 SELPSVLNSTISMAITFIFSFVISVFMSFQWDSIKETVSNWSEKMSP-----KGSEVTFA 214

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   +++    + I+ + + +     Y L G P    L ++T +  ++P   P++   ++
Sbjct: 215 IADEVQTYIHSLFILMVIKVIEYALVYSLLGHPDWFILCILTGLALLVPYIGPMAVYGLA 274

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I   +   I     L +   I   + D  + P +      +  L   F ++ G    G++
Sbjct: 275 ILTAVGMPIGRFGFLVVILLILSNVDDYVISPLVHARNTSITPLWVLFSIMVGNTLFGII 334

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ I   +   I    K       ++ E+
Sbjct: 335 GVIIAIPVYLAIHKFLKLRKYRKDDSYEQ 363


>gi|331084164|ref|ZP_08333270.1| hypothetical protein HMPREF0992_02194 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330402019|gb|EGG81592.1| hypothetical protein HMPREF0992_02194 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 346

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 99/345 (28%), Gaps = 11/345 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-----ISKKEESS 59
           M   +  +   +   + + + ++     P     I+                  K   S 
Sbjct: 1   MNWKKAGIAAGVSAGVFLGMKYVFPVILPFFLGWILAEAVHVPAKRICEKQTSKKLHLSE 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T L +I  +  + L ++ +LF   Y   ++ E V       +    +   L      +  
Sbjct: 61  TALGMIFIIMGVLLVVLSMLFTLQYLTGKLGECVQYYPELKEEAQDILWKLCLGIEHLTG 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                      +  ++                 A       + +   +   I+    F +
Sbjct: 121 ISADKSCFYISRQAELFLRCIFSGKNS---MNTAVVSVKGCVCFVGILAICIVFAILFLQ 177

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   +   L+             I R +   I++       I     L+     W   V 
Sbjct: 178 ERERVYASLEK---WKIFGNLIHIIREMAAGIKAYLKAQFKIIFVVCLLCVGGLWALKVR 234

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +V  GV   +    P     +F      L+        +   L   +    V + L P 
Sbjct: 235 HYVGFGVAIGMFDAFPVLGTGTFLIPGALLMFLQGKIKMSIGLLVLYLLTAAVRQFLEPR 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+G  + +  L     +  GV   G  G  +GPV   LI VI KE
Sbjct: 295 LIGNHVGVSPLLVLVSVYLGVVLYGGFGFVLGPVSAFLIYVILKE 339


>gi|21228854|ref|NP_634776.1| hypothetical protein MM_2752 [Methanosarcina mazei Go1]
 gi|20907379|gb|AAM32448.1| hypothetical protein MM_2752 [Methanosarcina mazei Go1]
          Length = 362

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 102/336 (30%), Gaps = 25/336 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      ++ + +  +     P+  ++       P+    + K+         I+ V
Sbjct: 20  RVLIYSTAAVLLTIGMKAISSILMPIFFSIFSYLIFAPLVRWLMRKRVPGK-----ISVV 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ +FI   +         + +L  ++         +   +                 S
Sbjct: 75  LVILVFIFVFVGTTLLFANSLLQLSGRIPNYENQLTSILNSI-----------------S 117

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  +S   +  +   F    +       L+   +I  ++I   F   D      ++
Sbjct: 118 IYLPEAGVSVESVLRDIAAFAFNVSGDIISGALNAGSTIALIVITTTFLLLDSAGAPVKM 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               E             + + + +  L  T   +  G+         G+   V  G++ 
Sbjct: 178 QK--EGENQPVHISQYTELSRTVINYMLLRTETNLLGGIGTAILLLAGGIDFAVLWGLLF 235

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP     ++     +  L +  +  A  + +   I   +V+  + P L G  +KL
Sbjct: 236 FLFGYIPYLGFYLAAIPPMLLGLFEYGLIGAVGVLVGITIINALVENVIFPSLAGKGLKL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                F  L      +G  G  I   L  ++ +I +
Sbjct: 296 SPTLVFLSLFYWSFVLGAAGALIAVPLTIVVKIILE 331


>gi|212693909|ref|ZP_03302037.1| hypothetical protein BACDOR_03431 [Bacteroides dorei DSM 17855]
 gi|237708530|ref|ZP_04539011.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724003|ref|ZP_04554484.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265751306|ref|ZP_06087369.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212663441|gb|EEB24015.1| hypothetical protein BACDOR_03431 [Bacteroides dorei DSM 17855]
 gi|229437667|gb|EEO47744.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229457459|gb|EEO63180.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263238202|gb|EEZ23652.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 333

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 125/336 (37%), Gaps = 20/336 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + L+    +  F   +L A  I             +K    +  A++  +  +  F
Sbjct: 15  IILGLGLILFIKMSPFMGGILGACTIYIMVRKQMFYLTQEKHFKKSITAILLLIEAIMCF 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VPL    +  + +++ +             +  WL    G    +              
Sbjct: 75  LVPLSLAVWLLINKLQTVNVDTTGFIHTVTNLADWLHTKTGYDLLNAEN----------- 123

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                   ++    +P            + ++   ++  L+F    G  + + +  L   
Sbjct: 124 -------ISSIASILPAIGQFLMGSISSFAVNAFVLVFVLYFMLIGGIQMEKYIYELLPF 176

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +I
Sbjct: 177 S-DTNKKNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATVI 235

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T 
Sbjct: 236 PIVGTALVWFPLAAYLALSGDWTHAIGLLLYCGLIVTNIDNLIRFILQKKMADTHPLITI 295

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           FG+V G+   G +G+  GP+L+++  +         
Sbjct: 296 FGVVIGLSLFGFMGVIFGPLLLSIFILCVNIFKTQY 331


>gi|87124280|ref|ZP_01080129.1| hypothetical protein RS9917_11740 [Synechococcus sp. RS9917]
 gi|86167852|gb|EAQ69110.1| hypothetical protein RS9917_11740 [Synechococcus sp. RS9917]
          Length = 369

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/303 (10%), Positives = 90/303 (29%), Gaps = 5/303 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-IVPLLFLFY 83
           + LK       +A+++      +      +         ++  V +  +  I     +  
Sbjct: 20  WTLKDVLIHCFAAIVLAMALCTLVGRLRQRLPMPRPLALLVCLVGLALVIGIGA-AIVVP 78

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE---LWTKHLSHPQSLKILSETF 140
               +  +L+ ++  A +    +     +   GM               P  +    +  
Sbjct: 79  PFTTQFHQLLLQLPAAARELKSLAIQSINGISGMVYGSGTAASWSERLFPDGVNNWPDGS 138

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              +G+    +             + I+F+I           +  +    L    +    
Sbjct: 139 ALASGLGGSLQGLLGLAGNLGSGLVQIVFVIAVSLMVAVQPQAYREVAILLVPSFYRRRA 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++I       + S  +G+ I ++   ++ G    L GV   +A  ++  ++ +IP   P 
Sbjct: 199 REILLQCGDALSSWMVGLLISSLCVAVLAGIGLSLLGVRLVMANALLAGLLNVIPNVGPT 258

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T   + + +    + +  +     +   +    + P ++   +KL    T        
Sbjct: 259 MSTIFPMAMALLDAPWKSLAVLGLYVVIQHLESYVITPSVMHHQVKLLPGLTLTAQFVFT 318

Query: 321 RTM 323
              
Sbjct: 319 VLF 321


>gi|84517107|ref|ZP_01004463.1| hypothetical protein SKA53_03604 [Loktanella vestfoldensis SKA53]
 gi|84509002|gb|EAQ05463.1| hypothetical protein SKA53_03604 [Loktanella vestfoldensis SKA53]
          Length = 384

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/336 (13%), Positives = 112/336 (33%), Gaps = 19/336 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
             G +  +   ++L  L   +     + +A+I+   +  + +    ++         IA+
Sbjct: 21  QTGALMIIAFAVVLFLLVQARFILISLATAIILFSLTSDVINFIARQRIGPLRIPNAIAS 80

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++ M L    LL L    + ++  ++   +   +        +                 
Sbjct: 81  IAAMVLIATALLILTSVLLAQVNTVLVTTLAYTERAPSAIASM-----------FGWLSE 129

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  ++     +   T+ +      AS      +   L + F+     +F     S+   
Sbjct: 130 DNQAAIFNAVRSIDATSYLRSAAGQASGITQATVLIILFVGFLFAERIWFDTKLESLIGD 189

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                        +KI + +   +    L  T+I+   G ++ +      +    ALGVI
Sbjct: 190 KAQAL------RVRKIIQSIIHRVNYYLLVKTVISGITGAMVYALALAFQLELATALGVI 243

Query: 248 TAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T ++  IP    I  +     +  +  G       +F+      F+    + P L+G  +
Sbjct: 244 TFVLNFIPNIGSILATGLIALVTHVQFGAPNTTLAIFVIATGIQFLNGNVIDPMLMGRAL 303

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +L        L       G+ G+F+   +M ++ V+
Sbjct: 304 RLSSFGIILSLAFWGAVWGVPGMFLSVPIMVMLLVV 339


>gi|149280338|ref|ZP_01886459.1| permease [Pedobacter sp. BAL39]
 gi|149228887|gb|EDM34285.1| permease [Pedobacter sp. BAL39]
          Length = 367

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 126/343 (36%), Gaps = 15/343 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +       ++ + I+ +  +++   +   AP+L++ ++     P+ +   +K +   +
Sbjct: 1   MSQPFYTKLAMVLFSIICVGYLAI-LGQTLLAPLLTSFLLSLLLMPLANFMETKWKFKRS 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+++ V ++ +    L FL         +       A      V  W+S   G     
Sbjct: 60  LAAIVSVVLMIAVISAILFFLANQLTDLWADWPLLKQQAEHSFHDVQGWISATFGVNTQK 119

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           ++     S              +  +           M      L + F+++  FF    
Sbjct: 120 QIDYLKDS-------------TSTALATSASVLGATLMTLSSTLLFLSFLLLFTFFILNY 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L S+ +        +I + +  +I+    G+ +      +++    WL  V  
Sbjct: 167 RRVLFTFLTSVFKEEHTEKVSEIVKRIQYIIKKYITGLFLQMFIVTVLMIFVLWLLNVKY 226

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V LG+IT I  +IP     +   +S+ +      +     + +       +    L P 
Sbjct: 227 AVLLGLITGIFNIIPYIGIFTALLISVLITFATAGVAKVLLVIIAFVAVHALDGNILMPL 286

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +VG  +K+  L  F G+V G    G+ G+F+    +A++ +I+
Sbjct: 287 VVGSKVKINALFAFIGIVVGEMVWGISGMFLCIPYLAMLKIIF 329


>gi|118474515|ref|YP_892768.1| transport protein [Campylobacter fetus subsp. fetus 82-40]
 gi|118413741|gb|ABK82161.1| transport protein [Campylobacter fetus subsp. fetus 82-40]
          Length = 336

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 103/341 (30%), Gaps = 22/341 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     ++      II   L        P   A+ I     P+       K         
Sbjct: 1   MKYQLTLISIASFVIIATGLAAASAIVVPFFLAVFIAIAISPVLEFMQRLKIRR-----T 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ + ++ +FI  L FL       +    S +               +        ++ +
Sbjct: 56  ISFILLIAIFIGILWFLGNVVSSALNGFSSSLPEYQMQFRIFIDKTVEWLNSYEIIKINS 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    + KI S T         I   +    ++ +   +        + +F +   S+
Sbjct: 116 FVLESIDTNKIFSTTSTILRQTSEIVTKSFLVFLLVVFMLVETQVFKDKVEYFAKKHMSM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
               +S   +L                +      TI +I  GL+L       GVP     
Sbjct: 176 HNIANSFISNL----------------KKYLAIKTISSIATGLILWLFLVYFGVPYAPLW 219

Query: 245 GVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            V+  I   IP    I     +I + L+  ++ +   L +   +    +   + P  +G 
Sbjct: 220 AVLAFIFNYIPTIGSIIAAIPAILMSLLVNDLSDTLWLSIIYLVVNISIGNFIEPKFLGA 279

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + +  L     L+     +G+ G+F+   L   I +   E
Sbjct: 280 GLGISTLVVILSLLFWGFLLGIGGMFLAVPLTMSIKIALNE 320


>gi|257095745|ref|YP_003169386.1| hypothetical protein CAP2UW1_4216 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048269|gb|ACV37457.1| protein of unknown function UPF0118 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 361

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 77/352 (21%), Positives = 145/352 (41%), Gaps = 3/352 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q I   ++  +++  +  L  F   +L A++I  T+ PI +  +      S   A++ +
Sbjct: 6   KQLIQIALVALLLIGCIAVLLPFTGTLLFAIVICVTTLPIRNRLLRLCRGRSNLAALLVS 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++ L + P+  L       ++  +  +    +HG  +P         M          
Sbjct: 66  ILLLLLLVAPMALLSGSLADGVEIAIRYLKPLMEHG--LPATPPAWLISMPIVGTDIASY 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            H           L    +D   + A     +F    L ++ +I  +FF +RD     + 
Sbjct: 124 WHELIESREEMNNLLRQFLDPTRKLALAAVALFAQGLLQLVLVIFFVFFIFRDAHIYVEA 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L +    L     +++  +V   +     G+   A  + +V    + +AGVP  V L V 
Sbjct: 184 LHTGSRMLAGDLGERMLALVEGTVTGVMAGIVGTAAAQAVVGMVGFIIAGVPGIVILTVA 243

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T   +M+P     + +   +++L  +G    A  + LWG   +  VD  L+P L+     
Sbjct: 244 TFFFSMVPVVGATLIWLGAAVWLYNEGQAGWAVFMVLWGMFGISSVDNFLKPVLISRTAS 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           LP L    G+ GGV   G +GLF+GP L+AL  V+ +E +     + E+ +S
Sbjct: 304 LPLLLIVVGVFGGVLVFGFIGLFLGPTLLALGQVLIREWLAHAGPDVERPAS 355


>gi|289582606|ref|YP_003481072.1| hypothetical protein Nmag_2958 [Natrialba magadii ATCC 43099]
 gi|289532159|gb|ADD06510.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 339

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 139/352 (39%), Gaps = 18/352 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +  +++    +S   +  F   VL A+++ F  +P+     S    S    A+
Sbjct: 1   MNISKGYLLTLVLIFAYLSWQLVVPFLQYVLLAVLLAFLLFPLQQRLESY--VSPMLAAL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  +  FI+P L +      +   L+  +         +   + D            
Sbjct: 59  SLVLLAIIGFIIPFLLIVAVVADDAANLLESLDAETLQVSELESTIED------------ 106

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +  +   I +          F+   A+ +        +     +  L++  ++G ++
Sbjct: 107 --QTGMEVDLIETAADSAQEVGTFVLEQATAWFSALTHALIGFGLALFLLYYLLKNGDNL 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +  +           +   +  V+ +  +G  +IAI EG++ G A +  G+P+    
Sbjct: 165 LEWIREVTPLPM-DVQDDLYGELSDVMWAVLVGHVLIAIIEGVIAGLALFAVGIPNAAFW 223

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I  I++++P    P+ +   SIYL++ G    A  L ++ AI + + D  LRP +V  
Sbjct: 224 TFIMVILSLVPLIGAPLVWIPASIYLVVIGEPLLAAGLAVYSAIVVGVSDDYLRPVVVDR 283

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             ++       G++GG+   G++GLF GPV++  +  + +          E+
Sbjct: 284 YAEISPAVIILGVLGGIYAFGIMGLFFGPVVVGALITVIEVLDEEYDRLAEE 335


>gi|103486810|ref|YP_616371.1| hypothetical protein Sala_1324 [Sphingopyxis alaskensis RB2256]
 gi|98976887|gb|ABF53038.1| protein of unknown function UPF0118 [Sphingopyxis alaskensis
           RB2256]
          Length = 408

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/310 (13%), Positives = 91/310 (29%), Gaps = 13/310 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L     FF P+ +A++I     P+      +   S+    +     +  +     + +
Sbjct: 58  FALQAGAEFFLPLTAAIVIAIALVPLLEWLERRGVPSALAAFLSLAAFLAIINAALAIIV 117

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                     L   +     +  P+  + + +                  S+   SE   
Sbjct: 118 VP-ATGWFARLPESIPRIQSNLAPLIDFYATLQ---------RFVDRTLMSVASGSEATA 167

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW- 200
           +             F        + + F ++ +FFF      + +           A   
Sbjct: 168 QAVAATAPTSVVDYFISSAPAAAIQLFFAVLVIFFFLAGWTRLRRGTIRRRGSFDGAMQT 227

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            ++ + V          +T+I    GL++    W  G+PS    G I +I   +P   PI
Sbjct: 228 ARVIQNVVDATADYLATITMINAMLGLIVALLLWALGMPSPFMWGGIVSICNFVPYLGPI 287

Query: 261 SFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             + +     L+    +  A    L       +    + P ++G  + +  L     L  
Sbjct: 288 VASVLLALGGLMTFDAVGLALLPALIFIGVHLVEANLITPLVLGKRLTINPLLILVSLSF 347

Query: 319 GVRTMGLLGL 328
                G  G 
Sbjct: 348 WGWVWGTPGA 357


>gi|60681100|ref|YP_211244.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|253563134|ref|ZP_04840591.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265762981|ref|ZP_06091549.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|60492534|emb|CAH07305.1| putative transmembrane protein [Bacteroides fragilis NCTC 9343]
 gi|251946910|gb|EES87192.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263255589|gb|EEZ26935.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301162588|emb|CBW22135.1| putative transmembrane protein [Bacteroides fragilis 638R]
          Length = 332

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 133/332 (40%), Gaps = 22/332 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              +  F   +L AL I            ++ +   +F A++ T   +  F+VP+  + +
Sbjct: 22  FRQITPFLGGLLGALTIYILVRKQMIYLGARMK--RSFAALLITGEAILCFLVPISLIVW 79

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++++                  ++  P  +         +   ++   +  +   +
Sbjct: 80  MLVNKLQD------------------INLDPQAIITPVEELAGIIKAKTGYDVLGSDTLS 121

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  +P+           + +++  ++  L+F    G  +   +D +         +++
Sbjct: 122 FIVSLLPKIGQAVMGGISSFAVNLFVLVFVLYFMLIGGTKMEAYIDDILP-FNEKNTREV 180

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISF 262
           +  +  ++RS  +G+ ++A+ +G V    Y++ G P+   +GV+T    +IP     + +
Sbjct: 181 THEINMIVRSNAIGIPLLAVIQGGVALIGYFIFGAPNAWLIGVLTCFATIIPMVGTALVW 240

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+ YL + G   NA  L  +G I +   D  +R  L         L T FG+V G+  
Sbjct: 241 FPVAAYLALTGEWANAIGLAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLSL 300

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G +G+  GP++++L  +          +NK+
Sbjct: 301 FGFMGVIFGPLVLSLFLLFVDMFKKEYLDNKK 332


>gi|183220231|ref|YP_001838227.1| putative permease protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189910349|ref|YP_001961904.1| permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775025|gb|ABZ93326.1| Permease [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778653|gb|ABZ96951.1| Putative permease protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 352

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/347 (15%), Positives = 121/347 (34%), Gaps = 12/347 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +I   IL+ +  +K    P+L + I  +    +   F S+         ++   
Sbjct: 14  RSAFFGLIALTILIGIVGVKFLAIPLLISGIHFYIFHGVVDYFESR-GIHRAITIIVIFT 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++      L F       + + +VS+  +            + +P      ELW K ++
Sbjct: 73  FLITFAYWFLAFYLPNLFEKAQPIVSEWSIKMDDPNFQLLDFTKLPVVSKNPELWKKIIN 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       +     + +  F     ++   +   +I + I  FF   D   I + +
Sbjct: 133 ---------PEEIAKLATNNLEEFLRSIVVMIPTFISWMIIIPIISFFLLLDANVIYKTM 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S   + F   +  +   + + I S    + I      LV    ++  G+   V  GV  
Sbjct: 184 ISFIPNRFFEMFLMVFYRMNQQITSYLKSLVIQCGIMALVSSIGFYFIGMKFFVLFGVFL 243

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIK 306
            +   IP   P+       ++ ++   +  +        I   +VD   ++P ++   + 
Sbjct: 244 GVANSIPYLGPLIGAIPPILFAILFPEMSPSIGSIASVVIVAQLVDNAIVQPVVIANAVS 303

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L  L    G+  G    G+ G+ +   +++++ V       A+KE++
Sbjct: 304 LHPLAILIGIAVGGNFFGIFGMLLAIPVLSILKVTIGILYHALKEHQ 350


>gi|255534118|ref|YP_003094490.1| hypothetical protein Phep_4237 [Pedobacter heparinus DSM 2366]
 gi|255347102|gb|ACU06428.1| protein of unknown function UPF0118 [Pedobacter heparinus DSM 2366]
          Length = 350

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 123/339 (36%), Gaps = 20/339 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   +I+ +  +  Y L+G F  +LS L++     P +   +  K  +  F A++  
Sbjct: 9   RNNINLVIIIALGCLIAYSLQGIFGSILSTLVLFTILRPAFIYMVDVKGYNKNFSALLLL 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  + + I+P   L    + ++ EL                   + P          KHL
Sbjct: 69  VVSVVVIILPFYTLSAMVINKIAEL------------------QNDPIYFKNLLFKLKHL 110

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                               +             +  L ++ M   L+F   D       
Sbjct: 111 IPVGDDVQRLIEEGLKKAGTWATELFPSLISGAFNIVLGLLLMYFLLYFMLVDRERFENA 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L            ++ +  +     +  LG   IA+ +G +L   +++ G    V  GVI
Sbjct: 171 LIKYAPFRA-QNAQRFAEEMRNTTYANVLGQGFIAMVQGSLLSLCFFVLGYTDPVFWGVI 229

Query: 248 TAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           T  ++ +P   P + F   ++  +  GN F    + ++G + +  +D  LR  +      
Sbjct: 230 TTFISFVPLLGPPVIFVPAALIQIANGNNFAGWAMLIFGFVVIINIDNVLRFMIAKKVGN 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  + T  G+V GV   G+LGL  GP+L++   ++ K  
Sbjct: 290 IHPIITVIGVVIGVPLFGILGLVFGPLLLSYFILLIKIY 328


>gi|256254732|ref|ZP_05460268.1| hypothetical protein BcetB_10635 [Brucella ceti B1/94]
          Length = 227

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 3/176 (1%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   +D     +   +  F+   D   +   +DS          ++I+R +   +     
Sbjct: 1   GKSLIDIAGLFVVTPVVAFYMLLDWDRMVNSIDSWVPRKQLHTVRRIAREMNAAVAGFIR 60

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL---IKG 273
           G   + +  G        L G+   + +G    +++ IP        A++I +       
Sbjct: 61  GQGTLCLILGTYYAIGLTLTGLNFGLLIGFFAGLISFIPYIGSFVGLALAIGVALVQFWP 120

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +      +     +  FI    L+P LVG  + L  +   F L       G  G+ 
Sbjct: 121 DWIMVCTVAAVFFLGQFIEGNILQPKLVGSSVGLHPVWLMFALFAFGSLFGFTGML 176


>gi|294497736|ref|YP_003561436.1| hypothetical protein BMQ_0969 [Bacillus megaterium QM B1551]
 gi|294347673|gb|ADE68002.1| putative membrane protein [Bacillus megaterium QM B1551]
          Length = 344

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 105/330 (31%), Gaps = 19/330 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++     +L   I  F    +  +   K   +ST + ++  ++++    +         M
Sbjct: 29  IRSMLQLLLFTFIFTFLIGRLQQTLRRKLPLNSTLILIVIYIALIGALGIVGYVYIPVIM 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ELV K++   +H                     T       +LK           I
Sbjct: 89  TQVTELVQKLMYFYKHPPD-----------------NTFVTYIIDNLKRFKSPENIQQNI 131

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D +  + S  G +     L+++  +  L    R      Q   S     F      + R 
Sbjct: 132 DLVYSYLSNIGKVSAQVFLALLLSLFFLLEKSRIHRLFVQLEQSRLGWFFKE-AGYLGRK 190

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
                        IIA    ++   A W+ G P+ +ALGV+  ++ ++P          +
Sbjct: 191 FVNSFGKVIEVQFIIAFVNSILSVIALWVLGFPNLLALGVMVFLLGLVPVLGVFVSLIPL 250

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
                  G       + +   +   +    L P L+     LP   TF  LV G   +G+
Sbjct: 251 CTIAYSLGGGVKVLSVLIMVVVLHALESYVLNPKLMSSKTNLPTFITFIILVFGEHFLGV 310

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            GL +G  +      +           KE+
Sbjct: 311 WGLILGIPIFIFFLDLVGVDSAQQLSKKEE 340


>gi|297196905|ref|ZP_06914302.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
 gi|197715967|gb|EDY60001.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
          Length = 416

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 89/315 (28%), Gaps = 15/315 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    ++   V L  L+     +  AL++     P+                V++ V
Sbjct: 79  RLLVLGAAVYAGFVLLGRLQLVAVALFLALVVTSVLRPLADLLARWL--PRALAVVVSVV 136

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  L  +      E   L  +            +                    
Sbjct: 137 GSLLVLLGLLALVGELVASEWGRLGQEFSGGVGRIERWLQ------------GAPFHVSP 184

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S          ++    +   A       ++   + +  +    FF   G       
Sbjct: 185 AVTSNLQDKVNSFVSDHRSVLISSAVSGAGRLVEVLTAGVLALFCSLFFVHSGDRFWSWF 244

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L        + +  R   +       G+ I+A    +++G A ++  VP  + L ++ 
Sbjct: 245 QELLPQRARDPFSRAGRTAWRTFAGYTRGIVIVAASNAVLVGVALFVLRVPLALPLTMLE 304

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A IP    PI+    ++  L       A  +     I   I    L P ++   ++L
Sbjct: 305 FFAAFIPLVGSPIALGVATVVALASRGPAIAIVVLALIVIIGQIEGHVLHPLVMSWAVQL 364

Query: 308 PFLPTFFGLVGGVRT 322
             +     ++ G   
Sbjct: 365 HPVIVAVSVIAGAIL 379


>gi|307150365|ref|YP_003885749.1| hypothetical protein Cyan7822_0429 [Cyanothece sp. PCC 7822]
 gi|306980593|gb|ADN12474.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 349

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/310 (11%), Positives = 92/310 (29%), Gaps = 9/310 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++   I +  L+ ++     + +A++       +        +    +   +    ++
Sbjct: 7   LGFICFIISIYILWQIQQLLLLIFTAIVFATALNRLIRWLEQH-QIKRNYAITLTFTGIL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L  +  + +    + + K L+       Q    +   L D   G       T      Q
Sbjct: 66  ILITLFFVLIIPPFLEQFKNLLELSPQIWQQIRHLLITLRDANLGWLPQPPTTLSDLVKQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I  +T                         L ++F++I +F    +     Q    L
Sbjct: 126 LQPIFEDTQFWKRF--------FAIFSNSFFAILQLLFILILIFVMLLNPHPYRQGFLRL 177

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    ++I       + + F G+ I +   G+      +   +   +   ++  ++
Sbjct: 178 FPSFYRRRGEEILDKTELALVNWFTGIVISSTFIGVFSAIGLFALHINLVLFNALLAGLL 237

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P +     I L +    +    + +   I   I    L P ++   + L    
Sbjct: 238 NFIPNIGPTTSVVFPIMLALLDAPWKVGAVLILYFIIQNIESYLLTPTVMAKQVSLLPAV 297

Query: 312 TFFGLVGGVR 321
           T    +   +
Sbjct: 298 TLMAQLFFAK 307


>gi|298291852|ref|YP_003693791.1| hypothetical protein Snov_1869 [Starkeya novella DSM 506]
 gi|296928363|gb|ADH89172.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 376

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 97/334 (29%), Gaps = 14/334 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+     Q  +    +  +  +++  +    P+++A+IIG    P       +       
Sbjct: 33  RQWQRVTQIAIIATAVIALAAAMFVARAVLIPIVAAVIIGSVIGPAIEGLAKRGVP---- 88

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A++ ++   I  L          + + + +              L      + +  
Sbjct: 89  -TALASLLIVAGLIAGLYGAAVALAGPVADWMGRAPEVGAILQERFAALKPSLQTVISLI 147

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              + +       +  E          +       G   L       F+   LFF     
Sbjct: 148 ESIQSIGRVAEPPMAVEIANSRMLESMVTLVTPVIGEFIL-------FIGSLLFFLAGRV 200

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + +  +G         ++ R +   + +  +  T I IG GL      W  G+P+ 
Sbjct: 201 QIKRRVVQVMGPRSARLTALRVFREIEDRLGAYLVTATFINIGLGLATALMTWALGLPNP 260

Query: 242 VALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              G    ++  +P   P           ++    I  A     +  +   I  + L P 
Sbjct: 261 PLWGAAAGVLNYVPYVGPAVMTLILAVAGIVTFPGILEAMLPAAFFLMITSIEGQFLTPL 320

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           ++G  + L     F  +       G  G F+   
Sbjct: 321 IIGRRVALNPFAVFLSMAFWTWLWGPAGTFLSVP 354


>gi|268316229|ref|YP_003289948.1| hypothetical protein Rmar_0662 [Rhodothermus marinus DSM 4252]
 gi|262333763|gb|ACY47560.1| protein of unknown function UPF0118 [Rhodothermus marinus DSM 4252]
          Length = 372

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 34/306 (11%), Positives = 95/306 (31%), Gaps = 12/306 (3%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN 100
            +   P+                ++    +  L  +    L  +   ++ EL   +    
Sbjct: 61  AYLLRPVVDRVQQ-LGLGRVPAILLTMSLLAGLISLVFTSLVPFLARQLAELSRLIS--L 117

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
           +                +  +  T   +  Q  + L            +         +F
Sbjct: 118 ESLQGAVTQFERWLMRFFPIQPGTLMETLRQGFETLIRE-------RQLASTIGSMLDLF 170

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            +   +++ +    FF  +DG  + + L  L  + +      +   +   +   F  + +
Sbjct: 171 ANLFYAVLVIPFVTFFALKDGTRLRRSLLRLVPNRYFELTLAVLDKLGANVGRYFRALML 230

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNA 278
            ++    +      L G+   VA+G+ T I   IP   P+        +     G+    
Sbjct: 231 QSLSVATLASVLLALVGLRFAVAVGLFTGIANTIPYFGPLMGFLAGTLVGIAQTGDFSMV 290

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +   +     +   +P +     +   L   F ++ G +  G++G+ +   ++ ++
Sbjct: 291 PEVLVAMGLTQIADNVLFQPLIFSRAARAHPLIILFAVLVGAQLAGIVGMLLAIPILTIV 350

Query: 339 AVIWKE 344
            V  ++
Sbjct: 351 RVAVEQ 356


>gi|313888147|ref|ZP_07821821.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845837|gb|EFR33224.1| putative membrane protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 427

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 124/373 (33%), Gaps = 27/373 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLY---FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           L  +  +  +I ++I +       L    + V+ A+I  +   PI +    K      F 
Sbjct: 52  LITKIFLGILIFYLINILFNKFPILGYTLSSVIIAIIFAYIINPIVNYLERK-GVKRQFG 110

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +I  +S + +F + ++ +    + E+  L++ +       I             +  EL
Sbjct: 111 VIIVYISAILIFGILIVSVIPKTINEVSNLLTSLPGMVDTLIREFNNFLSNVFAKFNIEL 170

Query: 123 WTKHLSHPQSLKILSETFL-----------------------KTNGIDFIPRFASRFGMI 159
               ++  +         +                           +             
Sbjct: 171 PKNFINIYKETNPKVNGNVETPQIVSNILDSIKGTINELIVKVQGSLMGSLSNVISKLYG 230

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
           FL     ++ +II  F+F  D      ++     +        ++R +   ++    G  
Sbjct: 231 FLTSAFRLVLIIIFSFYFSVDKERFMLRVKKAIPNKHREDISYLTRNIDIALQQFIRGRM 290

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           ++AI  GL+      +  V   + +G+IT +  +IP   P    A ++      +   A 
Sbjct: 291 LMAIFVGLLTMVYLLVLRVDFAIIIGLITCVADIIPFIGPFLGCAPAVLFAFMDSPMKAL 350

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            + +   I  ++ +  L P L+G    L  L     ++ G    G+ G+ I   L ++I 
Sbjct: 351 WVLILFVIVQWVENNILAPKLIGDSTGLNPLVILISIIIGGGIFGVWGMVISVPLTSIIF 410

Query: 340 VIWKESIMAIKEN 352
           ++     +   + 
Sbjct: 411 ILVDFIKIKYNDR 423


>gi|260587510|ref|ZP_05853423.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
 gi|260541775|gb|EEX22344.1| conserved hypothetical protein [Blautia hansenii DSM 20583]
          Length = 346

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/345 (15%), Positives = 99/345 (28%), Gaps = 11/345 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF-----ISKKEESS 59
           M   +  +   +   + + + ++     P     I+                  K   S 
Sbjct: 1   MNWKKAGIAAGVSAGVFLGMKYVFPVILPFFLGWILAEAVHVPAKRICEKQTSKKLHLSE 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           T L +I  +  + L ++ +LF   Y   ++ E V       +    +   L      +  
Sbjct: 61  TALGMIFIILGVLLAVLSVLFTLQYLTGKLGECVQYYPELKEEAQDILWKLCLGIERLTG 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                      +  ++                 A       + +   +   I+    F +
Sbjct: 121 ISADKSCFYISRQAELFLRCIFSGKNS---MNTAVVSVKGCVCFVGILAICIVFAILFLQ 177

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           +   +   L+             I R +   I++       I     L+     W   V 
Sbjct: 178 ERERVYASLEK---WKIFGNLIHIIREMAAGIKAYLKAQFKIIFVVCLLCVGGLWALKVR 234

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +V  GV   +    P     +F      L+        +   L   +    V + L P 
Sbjct: 235 HYVGFGVAIGMFDAFPVLGTGTFLIPGALLMFLQGKIKMSIGLLVLYLLTAAVRQFLEPR 294

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+G  + +  L     +  GV   G  G  +GPV   LI VI KE
Sbjct: 295 LIGNHVGVSPLLVLVSVYLGVVLYGGFGFVLGPVSAFLIYVILKE 339


>gi|67922408|ref|ZP_00515919.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67855752|gb|EAM51000.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 347

 Score = 94.3 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 101/341 (29%), Gaps = 15/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++I+   +  L+ ++     + +A II             +      +  + + + ++
Sbjct: 7   VGFVILAFCIYLLWKIRELLLLLFTAAIIANFLNHGVQLLQ-RMGMKRGYAVLSSILLLL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +       +      ++ EL   V L     I   +             L T       
Sbjct: 66  AILSAFFWLIIPPFAEQLPELFKLVALGIDQLIISTKDFISRLDPKLIDALPTNQEIIEP 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         +  I           L   L+++ +    F    +  +  Q    L
Sbjct: 126 ----------LQPLLKKIAGQGLLVFYATLGIPLTLLLLFALTFMLLANPSAYRQGFIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      I +   + ++     +    +   L+      +  +P  +A  ++  I+
Sbjct: 176 FPSFYRPKINHILKECDRSLQGVLTSILFQMVMISLLSFIGLSILSMPLTLAQAMLAGIL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFN----ATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             IP   P+      + + +  N +          ++  +   I +K L P ++     +
Sbjct: 236 TFIPNIGPVLSLIPPVTIALLENSWKSVTVFILYIIFYIVIQMIENKLLTPLVIKNRKSI 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               T    V      G+LG F+   L  +  V  KE ++ 
Sbjct: 296 LPALTLLSQVFFASFFGVLGFFLALPLALVSQVWLKEVLVK 336


>gi|262195294|ref|YP_003266503.1| hypothetical protein Hoch_2065 [Haliangium ochraceum DSM 14365]
 gi|262078641|gb|ACY14610.1| protein of unknown function UPF0118 [Haliangium ochraceum DSM
           14365]
          Length = 358

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 109/337 (32%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +M      II+           PVL AL +   S P      +    +   +A++ T 
Sbjct: 23  RVLMVGAAFVIIVAGFRIAAELMVPVLMALFLSLLSLPPLRRLKALGVPNPLAIALVVTA 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + ++  +         + +   ++ L  +    +                      
Sbjct: 83  VTLSILLISAVIGGS-----LTQFQEQIPLYQERLQFLFSGAMSWL-------------- 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           H + +++             + R A       L    ++  +I+ + F   +  S++ +L
Sbjct: 124 HERGVQVDLAMLTSAVDGAAVMRLAGNTAGSLLAALSNVFLVILTMVFMLLEAQSMNGKL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +      P           + ++       ++++  G +      L GV      G+I 
Sbjct: 184 RAALGD--PKADLSGFAQAAERVQKYLAIKAVMSLITGTLATLVCVLTGVDFPFLWGLIA 241

Query: 249 AIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   +P    I       +  LI+  + +A  + L   +   ++   L P L+G  + L
Sbjct: 242 FLFNFVPNIGSIIAALPPVLLALIENGLGSAVLVILGYVLINTVIGNMLEPRLMGRRLGL 301

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+      G +G+ +   L  ++ ++   
Sbjct: 302 STLVVFLSLLFWGWVWGPMGMLLSVPLTVVLKIVLDH 338


>gi|85373367|ref|YP_457429.1| permease [Erythrobacter litoralis HTCC2594]
 gi|84786450|gb|ABC62632.1| predicted permease [Erythrobacter litoralis HTCC2594]
          Length = 382

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/339 (10%), Positives = 86/339 (25%), Gaps = 28/339 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   +  +  +++Y  +     +   L+                        +   + V+
Sbjct: 39  IWVGVAGLAFLAVYISQSLLV-IFGGLVFAAMIDGGARLMGRVAPLPRPVRVIAVLLLVV 97

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                   F       +   L + +           +                       
Sbjct: 98  VFLAWLSAFAGSQIAQQAATLPAIIQGQATEVFEWAQ--------------------ANG 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                ++       +       +R          S + ++I   +   D     + ++ +
Sbjct: 138 LGVKEADLQAIAGQLASGVGTVTRALTGLAGGLTSAVLIVIIGLYVALDPNLYERGVEWM 197

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA-------GVPSHVAL 244
                          +   +R    G  +  + EG+       +         VP    L
Sbjct: 198 APRQNRRELHVTLVKMAYTLRRLMAGRLVGMLIEGIFTYIMLTVVAQLIGIGTVPMAALL 257

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T ++A +P    I    + I +   G         +   +   +    + P +    
Sbjct: 258 AILTGLLAFVPNIGAIVSGVLMITVGFSGGYDMGIYTLVVYFLVQNVDGYIVIPMIAKKT 317

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           + L         +      G+LGLF+   LMA+I V  +
Sbjct: 318 VDLAPALVLGFQLIMGILFGILGLFLADPLMAMIKVALE 356


>gi|300854561|ref|YP_003779545.1| hypothetical protein CLJU_c13750 [Clostridium ljungdahlii DSM
           13528]
 gi|300434676|gb|ADK14443.1| predicted membrane protein [Clostridium ljungdahlii DSM 13528]
          Length = 388

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/352 (13%), Positives = 107/352 (30%), Gaps = 15/352 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEE-----SSTFLAVIA 66
           I  ++   L  +     P + ALII +   P           KK             +  
Sbjct: 34  IFALLWNLLKKIINLAKPFVMALIIVYLLKPGVENIEKFLEKKKILKKASHRRVIGIIGV 93

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
              V  +F   +  ++     ++    S   +A+     +      +       +     
Sbjct: 94  YTLVAAIFAAVVSGIYIMIGGKLSHNTSIANMASYLNEYLNNPTLSVSSVSEKLKSLNIS 153

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +    + KI        +         +   +  +         II   +  +D      
Sbjct: 154 IPTSLNDKIAQIVSYVQSYFSASIGAMTNSIVAIVSNIALFFIAIILSIYLIQDSEYFVG 213

Query: 187 QLDSLGEHLFPA-----YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + +    F         K++  ++         G  + A   G++     +  G+   
Sbjct: 214 LWNKIFNLAFGKSKTGSKLKEVLHVMDVTFYKYIRGQLLEASIVGVLSAIVLYFIGIDYA 273

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGN-IFNATCLFLWGAIELFIVDKTLRPFL 300
           + +G+I  I  MIP    +  T +++ + + G     A    +       + D  L P +
Sbjct: 274 LVIGIIAGICNMIPYIGAVVGTVLAVIMALLGGQPITAVWAIIGMLAVRQVDDSLLAPKI 333

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           VG  + L  + T   ++ G    GL+G+ +     A + V+  +   +  E 
Sbjct: 334 VGNSVGLHPVFTMIAILIGGNLGGLIGMLVAVPTAASLKVLLGKWYASHMEK 385


>gi|152970116|ref|YP_001335225.1| putative transport protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238894583|ref|YP_002919317.1| putative transport protein [Klebsiella pneumoniae NTUH-K2044]
 gi|330014336|ref|ZP_08307893.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
 gi|150954965|gb|ABR76995.1| putative integral membrane transport protein [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238546899|dbj|BAH63250.1| putative integral membrane transport protein [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|328533203|gb|EGF59969.1| autoinducer 2 exporter TqsA [Klebsiella sp. MS 92-3]
          Length = 344

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 48/337 (14%), Positives = 107/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL +     P+    + +          +   
Sbjct: 12  KMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLV-RCRVPRVLAISLLIG 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L IV L  L        + L        +    +  WL  +   +   EL      
Sbjct: 71  LIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRMGFTVSVVELNKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             + +    +       +   SI  +++ + F   +   +  +L
Sbjct: 131 ------------------NAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPAKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L             +     +    +  T I++  GLV+     L  V      G++ 
Sbjct: 173 QQLMSRPVEGMGA--IQRAIDSVSHYLVLKTAISLITGLVVWGMLVLLDVRFAFMWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    +      I  +L+ G ++ A  +     I   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|288935653|ref|YP_003439712.1| hypothetical protein Kvar_2794 [Klebsiella variicola At-22]
 gi|290509681|ref|ZP_06549052.1| transporter tqsA [Klebsiella sp. 1_1_55]
 gi|288890362|gb|ADC58680.1| protein of unknown function UPF0118 [Klebsiella variicola At-22]
 gi|289779075|gb|EFD87072.1| transporter tqsA [Klebsiella sp. 1_1_55]
          Length = 344

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 107/337 (31%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL +     P+    + +          +   
Sbjct: 12  KMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLV-RCRVPRVLAISMLIG 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L IV L  L        + L        +    +  WL  +   +   EL      
Sbjct: 71  LIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRMGFTVSVVELNKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             + +    +       +   SI  +++ + F   +   +  +L
Sbjct: 131 ------------------NAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPAKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L     P       +     +    +  T I++  GLV+     L  V      G++ 
Sbjct: 173 QQL--MSRPVEGMGAIQRAIDSVSHYLVLKTAISLVTGLVVWGMLVLLDVRFAFMWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    +      I  +L+ G ++ A  +     I   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRVMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  +  +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIAKIALEQ 327


>gi|24214038|ref|NP_711519.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45658233|ref|YP_002319.1| putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24194909|gb|AAN48537.1| permease [Leptospira interrogans serovar Lai str. 56601]
 gi|45601475|gb|AAS70956.1| conserved putative permease protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 355

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/349 (13%), Positives = 115/349 (32%), Gaps = 14/349 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     +++F I+VSL+ L     P++ A +I +      ++  S           I   
Sbjct: 15  RTSFFLIVIFTIVVSLWGLHLLAVPIVMAFLIFYAFNGTINNLES-LGVPRILSIAILMF 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +       +  +    +  +  L+                ++           W + + 
Sbjct: 74  VISVPIYFFINSIAPPIVSTLNPLLKNWKQDLDDAKFKYLTVTVNLQFNEFPSSWNETI- 132

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       L     + +      F          +I   +  F F  +G  + + L
Sbjct: 133 --------RPDELIKKIAELMHEQVKAFVSYIPTLIGYLIITPLFAFLFLLNGNGMYKSL 184

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL  + +      ++  + + + +    + I      +V G  ++  G+P     G+  
Sbjct: 185 ISLIPNRYFEMALMVTYKINEQLTNYLKSLMIQGAIICVVSGIGFYFIGLPYFYIFGLFL 244

Query: 249 AIMAMIPGGAPISFTAVSIYLL----IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            +   +P   PI      ++        G     T + +  A+   I +  ++P ++ G 
Sbjct: 245 GVANSVPYLGPIMGAIPPLFFALVIGGDGTTELLTSILIVVAVAQMIDNFLIQPIVISGS 304

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           + L  +     +  G   +GL+G+ I   + A++ V  +    ++K++ 
Sbjct: 305 VSLHPIVVVGAVTVGGAALGLVGMLIAVPIAAILKVTIQTLYSSMKDHN 353


>gi|150400408|ref|YP_001324175.1| hypothetical protein Mevan_1671 [Methanococcus vannielii SB]
 gi|150013111|gb|ABR55563.1| protein of unknown function UPF0118 [Methanococcus vannielii SB]
          Length = 334

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 62/337 (18%), Positives = 135/337 (40%), Gaps = 21/337 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R +++F +   LY L  F + V  A+ + + + P+Y++     +   T+ A    + 
Sbjct: 8   ILKRLLMLFSVFALLYMLWPFVSIVSIAIAVAYMAKPLYNNL--WPKLGRTYGAFTCLLG 65

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   I+ +L +    +  +  L             +  +L+++       +L    +S 
Sbjct: 66  IVVPMILLVLLVIKDVVFFLVSL---------DVRIMVDFLTNVVSHFEFLQLNESDISK 116

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S                I    +          + ++ +    F+F +DG+ I     
Sbjct: 117 IVSELWK--------LSKPILDSIASQISAIPSLMMKLLLLFFLTFYFLKDGYKIKDIFL 168

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S        +   + R V    +  F+G  + ++  G++    Y L GVP+ + LG ++ 
Sbjct: 169 SYVPEDRKEHATLVIREVHAAFKILFIGNAVTSLCVGIISIIGYSLMGVPNSITLGALSG 228

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKL 307
           I+ ++P     +    ++IY L+ G+I  +  + L+G I L +  D  +RP +V     L
Sbjct: 229 ILNILPVVGGWTIYFPLTIYYLLIGDITKSILILLFGIIFLSLAPDFAIRPKIVAKSSDL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +      + G    G+ GL IGP+++  +  + K 
Sbjct: 289 HPVLVLIAFLVGPLAFGISGLAIGPIIVGTVYAVHKA 325


>gi|300710664|ref|YP_003736478.1| hypothetical protein HacjB3_06475 [Halalkalicoccus jeotgali B3]
 gi|299124347|gb|ADJ14686.1| hypothetical protein HacjB3_06475 [Halalkalicoccus jeotgali B3]
          Length = 335

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/348 (18%), Positives = 134/348 (38%), Gaps = 15/348 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +G +  +I  ++ VS   ++ F   +L AL++ F   P++     K        A 
Sbjct: 1   MNVRRGFLLGLIALLLAVSFAMVQPFLQYLLLALLLAFVLHPLHERLEPKVGG--QLSAA 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I  V  +  F++P + +      +   L  ++      G            G+   E   
Sbjct: 59  ILIVGSLIAFVIPFVVVGATVAGDAMALAQQLQSGGVSG-----------FGLGQVEALI 107

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +  +  Q       +         +   A           + +   +  L++  +DG  +
Sbjct: 108 QQYTGFQIDLASRVSAYAEQAAGIVAGSAPGVFGTISHAFVGLGLGLFVLYYLLKDGSKL 167

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L      L      ++   + ++  +  LG  ++AI +G + G   ++ G+P+    
Sbjct: 168 MGWLRETLP-LPSTVQDELYASLNEITWAVLLGHVLVAIVQGAIAGIGLFVVGIPNATLW 226

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
             I  ++++IP     + +   +IYL+  G       L L+G I +   D  LRP +V  
Sbjct: 227 TFIMIVLSLIPIIGSFLVWGPAAIYLVATGQTVFGVGLLLYGTIIVNATDNFLRPIVVDR 286

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             K+       G++GGV  +G +GLF+GPV++  + V+ +      + 
Sbjct: 287 HAKINPSIIIIGVIGGVYLIGFMGLFVGPVIVGALKVVLEIFDEHYEA 334


>gi|150004610|ref|YP_001299354.1| putative transmembrane protein [Bacteroides vulgatus ATCC 8482]
 gi|294776726|ref|ZP_06742190.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|149933034|gb|ABR39732.1| putative transmembrane protein [Bacteroides vulgatus ATCC 8482]
 gi|294449381|gb|EFG17917.1| putative membrane protein [Bacteroides vulgatus PC510]
          Length = 333

 Score = 94.3 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 125/336 (37%), Gaps = 20/336 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + L+    +  F   +L A  I             +K    +  A++  +  +  F
Sbjct: 15  IILGLGLILFIKMSPFIGGILGACTIYIMVRKQMFYLTQEKHFKKSITAILLLIEAIMCF 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VPL    +  + +++ +             +  WL    G    S              
Sbjct: 75  LVPLSLAVWLLINKLQTVNVDTTGFIHTVTNLADWLHTKTGYDLLSAEN----------- 123

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                   ++    +P            + ++   ++  L+F    G  + + +  L   
Sbjct: 124 -------ISSIASILPAIGQFLMGSISSFAVNAFVLVFILYFMLIGGIQMEKYIYELLPF 176

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +I
Sbjct: 177 S-DTNKKNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATVI 235

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T 
Sbjct: 236 PIVGTALVWFPLAAYLALSGDWTHAVGLLLYCGLIVTNIDNLIRFILQKKMADTHPLITI 295

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           FG+V G+   G +G+  GP+L+++  +         
Sbjct: 296 FGVVIGLSLFGFMGVIFGPLLLSIFILCVNIFKTQY 331


>gi|260425662|ref|ZP_05779642.1| putative transporter permease [Citreicella sp. SE45]
 gi|260423602|gb|EEX16852.1| putative transporter permease [Citreicella sp. SE45]
          Length = 345

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 96/342 (28%), Gaps = 16/342 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M  PQ      ++ ++   L+  K    PVL ALI  +    +               A+
Sbjct: 1   MNLPQITYLTALLIMLGYILHIGKPVILPVLIALIALYILSNVTDRLGRVPVIGR-LPAL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + V+  F V  +  F Y      ++ + +     +   +    + + G         
Sbjct: 60  LRRLIVLLAFTVLTVLSFAYLADTFTQVAAALPGYESNIDALVLRAAHVFGIEDQPTWAK 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +     ++ S        +           +           M   L   + D    
Sbjct: 120 VRSATIDRFQVQSYIGPVLLSLRGFGGTLFLVTLYAFFMMAERAVMARKLANAFGDPER- 178

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                             +   +   +       T++ I  GL+      + G+   +  
Sbjct: 179 ------------ETRTIALFERINTRVGDYLSVKTVVNIILGLLSYGVLLIFGIDFALFW 226

Query: 245 GVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            ++  ++  IP    +      + L     G+   A+ + +   +    V   L P ++ 
Sbjct: 227 AILIGLLNYIPYIGSLIAVIFPVLLSLAQTGSYSAASMVAVGLTVAQMFVAGYLEPRMMS 286

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L      F L       GL G  +   L A + ++  E
Sbjct: 287 RTFNLSPFVVLFALAFWGALWGLPGAVLAVPLTASMIIVLAE 328


>gi|162451781|ref|YP_001614148.1| putative transport protein [Sorangium cellulosum 'So ce 56']
 gi|161162363|emb|CAN93668.1| putative transport protein [Sorangium cellulosum 'So ce 56']
          Length = 365

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 22/322 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L + + F  PVL  + +   S PI +    +   ++        V +  L  V  +   
Sbjct: 20  GLRYAEPFLVPVLFGVALAAISSPIATWVTRRGLPAALGALAALVVDLAILVFVGAVVTI 79

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                   EL  KV +       +   L+                   +   +  E   +
Sbjct: 80  AGV-----ELEEKVPVYLVRMSSMTDALA--------------VTLTERGFPVNPEFLSR 120

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T     +        +       S+  +++ +FF   +G     ++  L     PA   +
Sbjct: 121 TLHTASLVPLLGGAAVTVASAASSLGVVLLVVFFALCEGAGAGAKVRRLL--STPARGLE 178

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-IS 261
               + + ++   +  T+ ++   ++      L GV   + L     ++  IP     ++
Sbjct: 179 HVDRIVREVKKYLVVKTLTSLLVAVLAYVLLVLLGVDLALLLASSLFVLHFIPNIGAAVA 238

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                +  L       A  + +   +   +V   L P ++G  + L  L    G++    
Sbjct: 239 TIPAVLAALASQGPGTAALVAIGYLLINLLVGNVLEPRVLGRTLGLSPLAVLIGMLFWGW 298

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G  G  +   +M +  +  +
Sbjct: 299 LWGPAGALLSVPIMMVAKITLE 320


>gi|126659576|ref|ZP_01730707.1| hypothetical protein CY0110_06214 [Cyanothece sp. CCY0110]
 gi|126619119|gb|EAZ89857.1| hypothetical protein CY0110_06214 [Cyanothece sp. CCY0110]
          Length = 345

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 104/341 (30%), Gaps = 15/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++++ + +  L+ +K     + +A+II          F  K      +  +++ + ++
Sbjct: 7   VGFIVIAVCIYILWNIKQLLLLLFTAVIIANFLNHGVQFFQ-KFRIKRGYAVLLSILLLV 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +       +      ++ EL   V       I + R+          + L +       
Sbjct: 66  AIISGFFWLIVPPFAQQLSELFKLVPQGIDQLIIMIRYFISRLDPELINALPSN------ 119

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         ++ I           L   L+++ ++        +  +  +    L
Sbjct: 120 ----QKFIEQLQPILERIAGQGLSVFYTTLGIPLTLLLLLALTLMLLANPDAYRRGFIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +      + +   + ++     +    +   L+      L  +P  +A  ++T I+
Sbjct: 176 FPSFYRKKIDYVLKECDRSLQGGLTMILCQMVMISLLSFIGLSLLKMPLTLAQAMLTGIL 235

Query: 252 AMIPGGAPISFTAVSIYLL----IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             IP    +      + +        +I       ++  I      K L P ++     L
Sbjct: 236 TFIPNIGIVLSFIPPVAIALLESQWKSITIFILYVIFYIIIRITEHKLLAPLVIENRKSL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               T    V      G+LG F+   L  +  V   E ++ 
Sbjct: 296 LPAFTLLSQVFFASLFGVLGFFLALPLALVSQVWLHEVLVK 336


>gi|167756725|ref|ZP_02428852.1| hypothetical protein CLORAM_02266 [Clostridium ramosum DSM 1402]
 gi|237734444|ref|ZP_04564925.1| predicted protein [Mollicutes bacterium D7]
 gi|167702900|gb|EDS17479.1| hypothetical protein CLORAM_02266 [Clostridium ramosum DSM 1402]
 gi|229382264|gb|EEO32355.1| predicted protein [Coprobacillus sp. D7]
          Length = 360

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/333 (12%), Positives = 96/333 (28%), Gaps = 16/333 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              L  +     P +    I F   P+ +          +    +  ++   +  + +  
Sbjct: 41  YGVLSAIWLVSKPFIVGFTIAFVLNPLINYIEKY-VTKRSIAVTMVYLAAFAILTLLISL 99

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                   + E+               +   +         +     +  +   +L  T 
Sbjct: 100 AVPMIYESISEMFPAFYSGLGEIGVFVKENFNYDISSLMRHIQNIVNAFFKDSVVLDTTI 159

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +          FL Y +  I+M            +I+ ++D           
Sbjct: 160 D-------VLNQVMINVTNFLIYIILAIYMSSNFKNIRSHIRNITYRIDKTLPIYLRE-- 210

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                 +   +        I AI + +     Y   G P+ + LG ++   ++IP   PI
Sbjct: 211 ------IDSSLVQYVKAFFIGAIAQAITTMLMYLAIGHPNWLILGFVSGASSIIPYVGPI 264

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + +   +         LF+   I+  I+   + P +    I L  +   FG++ G 
Sbjct: 265 VANCLGLITSLGMGTTTIVILFILIFIQSTIMSYVITPRIYSSRIDLSIMWVLFGILSGS 324

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              G+ G+ I   L+    + ++      +  K
Sbjct: 325 SLFGIWGMVIAMPLLVSAKITFQVYKENHQNEK 357


>gi|254424434|ref|ZP_05038152.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
 gi|196191923|gb|EDX86887.1| conserved domain protein, putative [Synechococcus sp. PCC 7335]
          Length = 370

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 93/315 (29%), Gaps = 10/315 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +      L+ ++       +A++I      I     +  + +      I  V   
Sbjct: 7   ISLLCLIAAGYILWQIRPLLLLSFAAVVIAIALNSITQKIKTTLKITRRAAIPITLVIAA 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +V ++ +    + + + L   +V  +Q        L             ++ L    
Sbjct: 67  IVALVFVVGIVPPFIEQFRLLAVLLVRFSQTLPARILDLQANMPERIRLPELSEFL---- 122

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +      +    +           L   L  +F+ +       +  +  Q +  +
Sbjct: 123 -----AWLTAPDSAAIDVFGNFFSIFNSSLQILLQTLFVSVLSLMILANPAAYLQVVLLV 177

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +    ++I      V+ +   G+ I ++    +      +  +    A  +I  I+
Sbjct: 178 FPAFYRPRAEEIFYKCELVLGNWLGGILISSLFVFSISFIGLLVLKIDLAFAHALIAGIL 237

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP   P +S     +  LI  + +    +     I   I    L P ++   + +   
Sbjct: 238 NFIPNLGPTLSMVFPVVVALISNDPWKVVAVIALYIIIQQIESYWLTPTIMAHQVSMLPA 297

Query: 311 PTFFGLVGGVRTMGL 325
            T    +      G+
Sbjct: 298 FTLIAQIFFASVFGV 312


>gi|16124344|ref|NP_418908.1| hypothetical protein CC_0089 [Caulobacter crescentus CB15]
 gi|13421190|gb|AAK22076.1| conserved hypothetical protein [Caulobacter crescentus CB15]
          Length = 340

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 90/323 (27%), Gaps = 18/323 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++    P+  AL +             +       LA+   V +        +++     
Sbjct: 1   MQDILTPLALALFLAVMIDSFARVLTDRTPRFPRRLALPTAVVLSLWLFGMSVWIVIDNG 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E  +  S+ V +    I                 +        + L             
Sbjct: 61  KEFFDHSSQYVDSLNAIIARFTPTIARLAPGLELSVAPTIGDLVKHLNPQ---------- 110

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF-PAYWKKISR 205
               R+       F  +  S I ++I L F        ++++ +L  H        K+ +
Sbjct: 111 ----RYFGDVAQSFNSFATSAILVLIYLGFILASRRGFARKIVALFPHHAERETNMKMFQ 166

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +       T+  +           L G+ +      +  + A IP         +
Sbjct: 167 RIRDGVEQYLWIQTVTGLMIAASAFMVMTLVGLDNAFFWAFLIFLAAYIPILGGAIGCFL 226

Query: 266 SIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +     +++ A  LF+      F+V   + P + G  + +        L      
Sbjct: 227 PPIFALIQFPESLWPAVLLFVALQGIFFVVGNVILPRMQGDSLNMDPTVVLLSLAVWGAL 286

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G+ G+F+   L     VI  + 
Sbjct: 287 WGVPGMFLSTPLTVAAMVILAQF 309


>gi|254883091|ref|ZP_05255801.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643611|ref|ZP_07998231.1| transmembrane protein [Bacteroides sp. 3_1_40A]
 gi|254835884|gb|EET16193.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317384780|gb|EFV65739.1| transmembrane protein [Bacteroides sp. 3_1_40A]
          Length = 333

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 125/336 (37%), Gaps = 20/336 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ + L+    +  F   +L A  I             +K    +  A++  +  +  F
Sbjct: 15  IILGLGLILFIKMSPFMGGILGACTIYIMVRKQMFYLTQEKHFKKSITAILLLIEAIMCF 74

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +VPL    +  + +++ +             +  WL    G    S              
Sbjct: 75  LVPLSLAVWLLINKLQTVNVDTTGFIHTVTNLADWLHTKTGYDLLSAEN----------- 123

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                   ++    +P            + ++   ++  L+F    G  + + +  L   
Sbjct: 124 -------ISSIASILPAIGQFLMGSISSFAVNAFVLVFILYFMLIGGIQMEKYIYELLPF 176

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 K + + +  ++RS  +G+ ++A+ +G +    Y+L  VPS +  G +T    +I
Sbjct: 177 S-DTNKKNVLKEINMIVRSNAIGIPLLAVIQGGIATLGYYLFDVPSALLFGFLTCFATVI 235

Query: 255 PGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     + +  ++ YL + G+  +A  L L+  + +  +D  +R  L         L T 
Sbjct: 236 PIVGTALVWFPLAAYLALSGDWTHAVGLLLYCGLIVTNIDNLIRFILQKKMADTHPLITI 295

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           FG+V G+   G +G+  GP+L+++  +         
Sbjct: 296 FGVVIGLSLFGFMGVIFGPLLLSIFILCVNIFKTQY 331


>gi|209918913|ref|YP_002292997.1| putative transport protein [Escherichia coli SE11]
 gi|209912172|dbj|BAG77246.1| putative transport protein [Escherichia coli SE11]
          Length = 344

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 101/337 (29%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I      +    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNTLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|271968820|ref|YP_003343016.1| hypothetical protein Sros_7599 [Streptosporangium roseum DSM 43021]
 gi|270511995|gb|ACZ90273.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 355

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 16/323 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    +  +IL  LY ++    P++  + I     P Y     +   S         +
Sbjct: 24  RLLAIIALAAVILWVLYVVQVVVIPIVLGMAITTLLLPPYQRL-RRHGLSRALATTAVCL 82

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L    +  L    +  + EL      A      +   L                  
Sbjct: 83  GGFLLLAALVALLVPPTVAGVAELRRSFGKAGGDLQMLASSLG--------------LDE 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +          +     I   A        +    ++  +I   +F   G  +   +
Sbjct: 129 KKTTELFEQAKQYLSGRGGEIASGALAGVRTVGEILFGVVLAMILSVYFVHSGDRLVGWV 188

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L         ++   ++  V+     G+ ++ + +G  +G A W+ GVP  + L V+T
Sbjct: 189 IDLAPRGARRTLRESGAVIFDVVSRYIRGVALVGLVDGFFIGIALWILGVPIALPLAVLT 248

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A +P     +   ++  +  +      A  +     +   +    L P + G  + L
Sbjct: 249 FAGAFLPVVGAFAAGLLAAVVAFVAKGWLVALIVVAVTVLVQQLEGHVLAPQIYGRALDL 308

Query: 308 PFLPTFFGLVGGVRTMGLLGLFI 330
           P       +  G    G++G F+
Sbjct: 309 PSAAILIIIALGSVLGGIVGAFL 331


>gi|212212631|ref|YP_002303567.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011041|gb|ACJ18422.1| hypothetical membrane spanning protein [Coxiella burnetii
           CbuG_Q212]
          Length = 376

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 101/341 (29%), Gaps = 21/341 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +  + ++ +I+  L+  +  F P+  AL++ +    + ++   +           A  
Sbjct: 39  NSVAAFALVVLIVYLLFIGRFLFLPLTIALVLWYVIISL-TALYQRIPFKKRLSHGFALF 97

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    + L   F      + +L+       Q    + RW + + GG            
Sbjct: 98  LAIVTTAIFLYLFFLMFTQSLPDLIEAAPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQI 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++       L     +F       F ++      +    ++                
Sbjct: 158 DLKNIFSELPIILSLTAANFTLVIVYLFFLLLEHRSFNQKLKLLCHSSKKY--------- 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I + + K + + F   T+I++   L          + +        
Sbjct: 209 ---------KKVTEIIKEITKDVNNYFKVKTLISLITALFSYFVLLGFKINNAEFWSTFV 259

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  IP   P+      + +       +     L +       I+   + P  +G  + 
Sbjct: 260 FLLNYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRLN 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L  L     L       G +GLF+   +M ++ +I  +   
Sbjct: 320 LSPLVILLSLAFWGSLWGFIGLFLSVPIMVILTIILGKFPK 360


>gi|254504159|ref|ZP_05116310.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222440230|gb|EEE46909.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 355

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 99/330 (30%), Gaps = 19/330 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             ++ ++   L   +    P + A+I+ +    + + +      +     ++A    +  
Sbjct: 12  VFLISMVGWLLVVGRSLLLPFIIAIIVWYMINALSNVYRRIGYGNFHLPGLVAFPLALLT 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                 F+     + + +L        +    +    +D+            HL+ P  L
Sbjct: 72  IFSVSTFVLDIVAVNLTQLAQDAPTYQRRLEELFTQAADLF-----------HLNDPVEL 120

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           + L    +    +       +          + ++F+++    F R    +         
Sbjct: 121 RDLFPDSVVPRMVTAGASVVTAIAGSASLVFIYVLFLLLEQSTFDRKFEKL------FAT 174

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I   +   +   F   T +++  G++        G+P     G I  I+  
Sbjct: 175 PERAKAAFAIRAEINSSLMHYFTIKTAVSVATGVLTSLVLIAIGLPYAALFGFIAFILNY 234

Query: 254 IPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    +        L       +     +     +  F +   + P L+G  + L  L 
Sbjct: 235 IPTIGSLIGVIFPSLLAIVYYDTLGPFLIIATGLGLIQFSIGNLIEPRLMGANLNLSGLV 294

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L       G++G+ +   L  +I ++
Sbjct: 295 IMLSLALWGAIWGVVGMVLCVPLTVMIVIV 324


>gi|168181101|ref|ZP_02615765.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           NCTC 2916]
 gi|226951086|ref|YP_002806177.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A2 str. Kyoto]
 gi|182668156|gb|EDT80135.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           NCTC 2916]
 gi|226841539|gb|ACO84205.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A2 str. Kyoto]
          Length = 351

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 101/326 (30%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I  I  +  +    +  P + A +         +  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LVFFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEEEISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D    +
Sbjct: 129 SIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTKDITKHN 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +  +   + +  I     K++    L    +           +++  +   +   
Sbjct: 189 NKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +  AI   +P     +       + I         +  L     +  + + L P L+   
Sbjct: 249 ITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLISYAAVSTIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPISILAAIFIGLKANGISGMFF 334


>gi|261339650|ref|ZP_05967508.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
 gi|288318476|gb|EFC57414.1| permease, PerM family [Enterobacter cancerogenus ATCC 35316]
          Length = 344

 Score = 93.9 bits (232), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 109/337 (32%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILTGVRFAADIIVPFILALFIAVILNPLVHRMVRLRIPR-----VLAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + IV ++ L  Y    + EL   +             L          E W +   
Sbjct: 67  LLIGIIIVAMVLLVAYLGTSLNELARTLPKYRSSLAIPLMQL----------EPWLQRAG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S++ L         +  +    ++         L  + ++  L    +    + Q +
Sbjct: 117 IEISVEELLRYIDPNAAMTIVTSLLAQLSNAMTSIFLLFLTVVFMLLEVPQLPAKLQQMM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I++  G V+        V      G++ 
Sbjct: 177 VR------PVEGMGAIQRALDSVSRYLVLKTAISLVTGAVVWGMLMALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    +      I  +L+   +++A  L     I   I    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPILQVLVFSGLYDALVLLAGYLIVNLIFGNILEPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIGLEQ 327


>gi|153939240|ref|YP_001392990.1| sporulation integral membrane protein YtvI [Clostridium botulinum F
           str. Langeland]
 gi|152935136|gb|ABS40634.1| sporulation integral membrane protein YtvI [Clostridium botulinum F
           str. Langeland]
 gi|295320965|gb|ADG01343.1| sporulation integral membrane protein YtvI [Clostridium botulinum F
           str. 230613]
          Length = 351

 Score = 93.9 bits (232), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 101/326 (30%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I  I  +  +    +  P + A +         +  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LIFFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEEEISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D    +
Sbjct: 129 SIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTKDITKHN 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +  +   + +  I     K++    L    +           +++  +   +   
Sbjct: 189 NKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +  AI   +P     +       + I         +  L     +  + + L P L+   
Sbjct: 249 ITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLISYAAVSTIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPISILAAIFIGLKANGISGMFF 334


>gi|255008391|ref|ZP_05280517.1| putative transmembrane protein [Bacteroides fragilis 3_1_12]
 gi|313146114|ref|ZP_07808307.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134881|gb|EFR52241.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 323

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 134/332 (40%), Gaps = 22/332 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
              +  F   +L AL I            ++ +   +F A++ T   +  F+VP+  + +
Sbjct: 13  FRQITPFLGGLLGALTIYILVRRQMMYLGARMK--RSFAALLITGEAILCFLVPISLIVW 70

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++++                  ++  P  + A       +   ++   +  +   +
Sbjct: 71  MLVNKLQD------------------INLDPQAIIAPVEELAGIIKAKTGYDVLGSDTLS 112

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             +  +P+           + +++  ++  L+F    G  +   +D +         +++
Sbjct: 113 FIVSLLPKIGQAVMGGISSFAINLFVLVFVLYFMLIGGTKMESYIDDILP-FNEKNTREV 171

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISF 262
           +  +  ++RS  +G+ ++A+ +G V    Y++ G P+   +GV+T    +IP     + +
Sbjct: 172 THNINMIVRSNAIGIPLLAVIQGGVALIGYFIFGAPNAWLVGVLTCFATIIPMVGTALVW 231

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             V+ YL + G   NA  L  +G I +   D  +R  L         L T FG+V G+  
Sbjct: 232 FPVAAYLALTGEWANAIGLAAYGGIVVSQCDNLIRFILQKKMADTHPLITIFGVVIGLPL 291

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            G +G+  GP++++L  +          +NK+
Sbjct: 292 FGFMGVIFGPLILSLFLLFVDMFKKEYLDNKK 323


>gi|29654244|ref|NP_819936.1| hypothetical protein CBU_0923 [Coxiella burnetii RSA 493]
 gi|29541510|gb|AAO90450.1| hypothetical membrane spanning protein [Coxiella burnetii RSA 493]
          Length = 376

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 102/341 (29%), Gaps = 21/341 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +  + ++ +I+  L+  +  F P+  AL++ +    + ++   +           A  
Sbjct: 39  NSVAAFALVVLIVYLLFIGRFLFLPLTIALVLWYVIISL-TALYQRIPFKKRLSHGFALF 97

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    + L   F      + +L+       Q    + RW + + GG            
Sbjct: 98  LAIVTTAIFLYLFFLMFTQSLPDLIEAAPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQI 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++       L     +F       F ++      +    ++                
Sbjct: 158 DLKNIFSELPIILSLTAANFTLVIVYLFFLLLEHRSFNQKLKLLCHSSKKY--------- 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I + + K + + F   T+I++   L+         + +        
Sbjct: 209 ---------KKVTEIIKEITKDVNNYFKVKTLISLITALLSYFVLLEFKINNAEFWSTFV 259

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  IP   P+      + +       +     L +       I+   + P  +G  + 
Sbjct: 260 FLLNYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRLN 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L  L     L       G +GLF+   +M ++ +I  +   
Sbjct: 320 LSPLVILLSLAFWGSIWGFIGLFLSVPIMVILTIILGKFPK 360


>gi|295703106|ref|YP_003596181.1| hypothetical protein BMD_0970 [Bacillus megaterium DSM 319]
 gi|294800765|gb|ADF37831.1| putative membrane protein [Bacillus megaterium DSM 319]
          Length = 344

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/330 (16%), Positives = 104/330 (31%), Gaps = 19/330 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++     +L   I  F       +   K   +ST + ++  ++++    +         M
Sbjct: 29  IRSMLQLLLFTFIFTFLIGRFQQTLRRKLPLNSTLILIVIYIALIGALGIVGYVYIPVIM 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ELV K++   +H                     T       +LK           I
Sbjct: 89  TQVTELVQKLMYFYKHPPD-----------------NTFVTYIIDNLKRFKSPENIQQNI 131

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           D +  + S  G +     L+++  +  L    R      Q   S     F      + R 
Sbjct: 132 DLVYSYLSNIGKVSAQVFLALLLSLFFLLEKSRIHRLFVQLEQSRLGWFFKE-AGYLGRK 190

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
                        IIA    ++   A W+ G P+ +ALGV+  ++ ++P          +
Sbjct: 191 FVNSFGKVIEVQFIIAFVNSILSVIALWVLGFPNLLALGVMVFLLGLVPVLGVFVSLIPL 250

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
                  G       + +   +   +    L P L+     LP   TF  LV G   +G+
Sbjct: 251 CTIAYSLGGGVKVLSVLIMVVVLHALESYVLNPKLMSSKTNLPTFITFIILVFGEHFLGV 310

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            GL +G  +      +           KE+
Sbjct: 311 WGLILGIPIFIFFLDLVGVDSAQQLSKKEE 340


>gi|219870412|ref|YP_002474787.1| PerM protein, putative permease [Haemophilus parasuis SH0165]
 gi|219690616|gb|ACL31839.1| PerM protein, predicted permease [Haemophilus parasuis SH0165]
          Length = 346

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 17/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +     Q ++    + IIL  +        P L +L I     PI     S K     
Sbjct: 1   MEQNSSLTQILVATAALVIILAGIKLSVEIVIPFLLSLFIAIICSPIIKYLTSHKV--PL 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     +  L    L  L    + E    + +  +     I     L D        
Sbjct: 59  WLAITILFILFLLGFFFLAGLINSTVQEFTASIPQYKILLSERIAAAMLLVDNW------ 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                ++    S + + E    +  ++F+ R    F  +  +  + ++ ++  LF     
Sbjct: 113 -----NIPVSISREQIQEQLDPSIIMNFVSRLLLSFSGVVTNIFVLLLVVVFMLFEAPTA 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L     +      +     V + + S     TI+++  G+ +     +A V  
Sbjct: 168 KHKLIVALR---GNKDVESEESHINRVLQGVISYLGIKTIVSLLTGISIWVLLEIADVQY 224

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G ++ ++  IP    I     +++   +         + +       ++   L P 
Sbjct: 225 AVLWGTLSFLLNYIPNIGSIIAGVPIAVQAFLLNGFSVGLGVSVGIIAINMVISNILEPR 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 285 MMGRTLGLSTLIVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 328


>gi|327398765|ref|YP_004339634.1| hypothetical protein Hipma_0605 [Hippea maritima DSM 10411]
 gi|327181394|gb|AEA33575.1| protein of unknown function UPF0118 [Hippea maritima DSM 10411]
          Length = 338

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 55/347 (15%), Positives = 132/347 (38%), Gaps = 12/347 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               +   ++ I +     +  F+  ++  + I    +P++     K   S    +++  
Sbjct: 2   RSAFIGLFLVIIAIAFTAIMLPFWKSLVWGVTIAIVFYPLFERLSKKI-SSKNIASLLTI 60

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ +  +P+    Y  + E ++ +  +         +   + +            K  
Sbjct: 61  LIVLIIIALPITLGVYIMVDESEKFMGNIENIKSSFNTIIVKIQNF--------SKLKIF 112

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +        +   L  N    I +                +F  I  F+  RD       
Sbjct: 113 APYIDKLDDALFSLIKNTGVLITKNVGAIFSQTYTIAAEFLFSFIIAFYLIRDADDFLNY 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + S+ +      + KI + +   I +T LG  + A  +G++    + + G+ +      +
Sbjct: 173 ISSIIDDK--ESFYKILKSIRDSINATVLGGVLTAFIQGIIGAIGFLIVGLNAFFLWMFL 230

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            A+ + +P     + +   +IYLLI G       +  WG++ +  VD   RP ++   I 
Sbjct: 231 IAMFSFVPLVGTAVIWIPAAIYLLISGAYIKGAFILAWGSLAIGTVDNYFRPIIISSKIN 290

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +  +  FFG++G +   G +G+ +GPV++++  V+ K  +    + +
Sbjct: 291 IHSMVLFFGILGSIVVFGPIGIILGPVIISVGDVLVKTYVSNKAKRR 337


>gi|217964951|ref|YP_002350629.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|290893492|ref|ZP_06556476.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|217334221|gb|ACK40015.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|290556993|gb|EFD90523.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|307570489|emb|CAR83668.1| membrane protein, putative [Listeria monocytogenes L99]
 gi|313609663|gb|EFR85166.1| membrane protein YdbI [Listeria monocytogenes FSL F2-208]
          Length = 348

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 111/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAIFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQTGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+   ++   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTVITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|150377348|ref|YP_001313943.1| hypothetical protein Smed_5234 [Sinorhizobium medicae WSM419]
 gi|150031895|gb|ABR64010.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 362

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 101/334 (30%), Gaps = 24/334 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   + +   + ++YF     APV  AL I    WPI S   ++      F   I    
Sbjct: 28  VVPGILTVIATVAAVYFSGVVLAPVACALFIIAVLWPIQSRLEARLH--RVFALAIVAAL 85

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +   F+V +  +        + L             +  WL                ++ 
Sbjct: 86  LFGTFVVFMSVVTLSFGRIGRSLAMDAGQFQLLYNRLAEWL------------GGHGIAL 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   ++ L    +  I    +     +L   L +I  ++ +         ++    
Sbjct: 134 AGFWADNLDSRLLLRALQGISARLNTMVSFWLVVLLYVILGLLEVSDLGARIRRLTD--- 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                   A       +    IR   L  TI++   G+ + +     G+      G++  
Sbjct: 191 -----DNAARIISGFELAASRIRRYLLIRTIMSAATGIAVWALATAFGLRFAAEWGIVAF 245

Query: 250 IMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +  IP   P   T +     L    +  +A  +F   +   FI+   + P + G  + +
Sbjct: 246 TLNYIPFIGPAFATILPTCYALAQFQSPQSALIVFACLSTAQFIIGSYIEPRVAGNTLGI 305

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                 F +       G+ G FIG  +   +   
Sbjct: 306 SPSLVLFSVFLWTFLWGIFGAFIGVPITIAVLSF 339


>gi|168698049|ref|ZP_02730326.1| hypothetical protein GobsU_00895 [Gemmata obscuriglobus UQM 2246]
          Length = 366

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/306 (11%), Positives = 93/306 (30%), Gaps = 17/306 (5%)

Query: 49  SSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
            +        + +   +  ++ +      L  L      +  +L  +V  A         
Sbjct: 69  DALARCTGLGAGWALGLVVIAAVAALTTGLYALGVSVAGQFGQLPEEVPRAIDRSRTYLE 128

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
                   +       +                  +G   +    + F         +++
Sbjct: 129 RHEWGRWVLDQVTPLGQL----------------PSGGSRLAGRLASFFSTTFGALGNLV 172

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            +     +   D  +      +L         +++ R +   +R   LG  +     G++
Sbjct: 173 LLTFLALYLAADPHTYLGGAVALIPPRHRRRAEQVLRAIGFHLRRWLLGRLVAMTTVGVI 232

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           + +  W  GVP  V LG++ A++  +P   PI+     + L +               + 
Sbjct: 233 VSAGLWGVGVPQFVVLGLLAAVLTAVPFIGPIAAAVPGVALALAHGPPAGLGAVGVYVLA 292

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG-PVLMALIAVIWKESIM 347
             + +  + P +     +LP       +       G+LGL    P+L+A++  +    + 
Sbjct: 293 QAVENYVVTPLVQKRAAQLPPALALAAVALAGVLFGVLGLIAASPLLVAVLVAVKMLYVE 352

Query: 348 AIKENK 353
            +  ++
Sbjct: 353 DVLGDR 358


>gi|218514990|ref|ZP_03511830.1| putative transmembrane permease protein [Rhizobium etli 8C-3]
          Length = 407

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 103/350 (29%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     P+  A+++G        +   K        A + +  
Sbjct: 73  WAIIGIFAILGLAAVYMMSLILIPITLAVVVGMILGLAAENLS-KMGVPRLANAFLLSSG 131

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  +    L         E  +         +P    +  +       E     +  
Sbjct: 132 VALVIALLANSLASPLATLANEAPAFFERTIARIMPYLERIEWLHITPATFESGPMSIGA 191

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + T+    + +    F  + L     +      +  F      ++    
Sbjct: 192 LLENTGNVLHVVTTSLTPALVQGLIFFAALLLFLASRVNLRKTIIMTFRTRTQRLAA--- 248

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I +G G+V+    + +G+ + V  G    
Sbjct: 249 -----------IRVINAVEQVLGFYFATASLIYVGLGVVMTIIAYASGLSAPVLWGFFAF 297

Query: 250 IMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP       T       ++                    I++  + P ++G  +++
Sbjct: 298 LSSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLIMENIIFPAVMGRRLEI 357

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  I +E ++  +   +   
Sbjct: 358 NPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEERPQPQLPK 407


>gi|212702630|ref|ZP_03310758.1| hypothetical protein DESPIG_00658 [Desulfovibrio piger ATCC 29098]
 gi|212673902|gb|EEB34385.1| hypothetical protein DESPIG_00658 [Desulfovibrio piger ATCC 29098]
          Length = 367

 Score = 93.5 bits (231), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 128/358 (35%), Gaps = 22/358 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFI----------SKKEE 57
           P  + R + +   L     L+     ++ A      + P+Y                +  
Sbjct: 2   PNMLPRLLYILAALAWFLLLRPNPVTIVMAGCFACLTLPVYRRMRCTIRHWRKRLRLRHP 61

Query: 58  SSTFLAVIA----------TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 VI+           V +    ++P+  L      ++   ++++     +   +P
Sbjct: 62  GRLGHIVISCSHRLPLYGYIVMIFSAVVIPISTLVLLVSPQVAGGLARLRELQANNFQLP 121

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                    +  S      +    S  + +   +  + +  +   +       +    ++
Sbjct: 122 PEWVMRFQELRHSLADYPKVDKMISEFLSNLDAMLADTMGLLINRSVDVLGGTMTVLWTL 181

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
              +     F      I+     +  H+     ++    + + ++   LG+ ++AI +G+
Sbjct: 182 FLFVTLTVIFAAYASRINLITARIF-HIPATMLRRFVLAIRRALQGVMLGIVLVAIAQGV 240

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGA 286
           + G  + +AG+      G++  ++A IP     + +  + + L   G    A  L LWG 
Sbjct: 241 LCGIGFAVAGIKQPAFWGLLATVVAPIPFVGTALVWGPLCLSLWFSGATMPAVGLALWGT 300

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + +  VD  LRP  +   I  PF      ++ G+ + G +GL IGPVL+A+     +E
Sbjct: 301 LAVTSVDNILRPLFLQQGINAPFFVLIIAILCGLGSFGPMGLIIGPVLLAIAMQAVEE 358


>gi|320195503|gb|EFW70128.1| Putative transport protein [Escherichia coli WV_060327]
          Length = 344

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLWL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|163856737|ref|YP_001631035.1| hypothetical protein Bpet2425 [Bordetella petrii DSM 12804]
 gi|163260465|emb|CAP42767.1| hypothetical protein predicted by Glimmer/Critica [Bordetella
           petrii]
          Length = 357

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 94/337 (27%), Gaps = 23/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +R +   ++L  LY     F P+  AL       P+  +   +        +++  
Sbjct: 18  QRLSLRVIAGILVLGLLYLASPVFIPLAFALFTIALVAPLQRALAGRMPAP--LASILTL 75

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
                     LL   +   L  + +        +                       +  
Sbjct: 76  AVTAGCVAAFLLLAGWGFGLIAQWIFGNAGRFQRLLS-------------------METE 116

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +   ++   F+      ++ R      +            II +     +      +
Sbjct: 117 GMHRHGGMVLRLFVDNVNAAWLLRAVQELALKINSMLGLSFLTIIFVALGLFELDEAPGR 176

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L           W   +  V   +R   +  T+ ++  GL +      AG+    A G +
Sbjct: 177 LRKALGASRGRRWTAAAAEVAAKLRRYMIIRTVASVLTGLSVWLFTIYAGLELASAWGGL 236

Query: 248 TAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             ++  IP   P+           +   ++  +  +FL       I    L P L G   
Sbjct: 237 AFLLNYIPFLGPLVATVFPALFAYVQYESLQASLAVFLSLNFIQVIYGCYLEPRLAGSAF 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L  L     +       G+ G FIG  L+     ++
Sbjct: 297 SLSPLMVMLAVFFWGLVWGIPGTFIGVPLLITATAVF 333


>gi|154500526|ref|ZP_02038564.1| hypothetical protein BACCAP_04199 [Bacteroides capillosus ATCC
           29799]
 gi|150270757|gb|EDM98053.1| hypothetical protein BACCAP_04199 [Bacteroides capillosus ATCC
           29799]
          Length = 359

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 93/318 (29%), Gaps = 2/318 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L  +  P L AL + +   P     + +        A + TV +  L    L  + +  
Sbjct: 29  VLLPWVLPFLLALGLAWLMEPAVKMLMGRFRLRRGLAAALTTVGLALLLCGALGLVLWRV 88

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLKILSETFLKT 143
             E+  L+ ++ +       +   + D      +                 I     L  
Sbjct: 89  GYELALLLGRLPVLLSGLPALGDHVGDWAYRFIVALPVQLQDFAKDALDGFIRQGISLPA 148

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              D +   A+       D  L +    +A FF       +   L       +     K 
Sbjct: 149 KLYDVLAGIAAGAAAAVPDAMLFLFTTALAAFFTSAARPQVLSFLSRQIPVSWRDRLGKA 208

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
             ++   +        ++ +     L   + +  V   + L  + A++  +P     +  
Sbjct: 209 VPVLKTSLGGWLRAQGLLMLVTFGELTVGFLILQVDLALLLAALVALVDALPVFGTGTVL 268

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                  +    +            +  V   L P LVG    LP L   F +  G R +
Sbjct: 269 LPWALFSLLSGDWKLAIGLAVLYGLVSAVRSLLEPRLVGQKAGLPPLAALFAMYVGFRAL 328

Query: 324 GLLGLFIGPVLMALIAVI 341
           G+ G+ + P+    +  +
Sbjct: 329 GVWGMILSPLAAIFLKQL 346


>gi|209518813|ref|ZP_03267627.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
 gi|209500783|gb|EEA00825.1| protein of unknown function UPF0118 [Burkholderia sp. H160]
          Length = 343

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/340 (12%), Positives = 99/340 (29%), Gaps = 18/340 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +++ ++   LY  +    P+  A+I  +  + + +         +     +       
Sbjct: 11  AAVLVTLLGWGLYVGRPVLVPIAFAIIATYVVFGLANLLRRIPYLGAPLRDGLRHAIAAT 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L ++ +       + +   L++         + +    + +      +           S
Sbjct: 71  LMLLTVYLSVDLLLSDRDRLMAVAPKYEATLLVLLTKFAALLHIETEANWTAIRRDLLAS 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +               +    +           +II +++   FF  +     ++L +  
Sbjct: 131 V--------------NVQAIMTATLSSVSSLLAAIIVVLLYATFFLIEHAKYRRKLVNFA 176

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   +   I       T++    G+       L G+       V+  ++ 
Sbjct: 177 GGSTR--IVSVIDEINSKIGVYLAMKTLLGAILGIASWICMRLVGLEFAELWAVLIGLLN 234

Query: 253 MIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP        AV   L  L  G    A  LF    +  F+V   L P+L+GG + L   
Sbjct: 235 FIPYAGSWISVAVPTLLAALQFGQWNAAIVLFFSLTLANFVVGHLLDPWLMGGSLNLSPA 294

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                L       G+ G F+   +   + + +       +
Sbjct: 295 IILVSLAVWSSIWGIAGAFLAVPITVGLVIAFSAFESTRR 334


>gi|170756253|ref|YP_001783269.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           B1 str. Okra]
 gi|169121465|gb|ACA45301.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           B1 str. Okra]
          Length = 351

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 101/326 (30%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I  I  +  +    +  P + A +         +  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LIFFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEEEISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D    +
Sbjct: 129 SIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTKDITKHN 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +  +   + +  I     K++    L    +           +++  +   +   
Sbjct: 189 NKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +  AI   +P     +       + I         +  L     +  + + L P L+   
Sbjct: 249 ITAAIADFLPILGIGTIYVPLALIYILVYKNYVVAIGLLISYAAVSTIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPISILAAIFIGLKANGISGMFF 334


>gi|209965064|ref|YP_002297979.1| hypothetical protein RC1_1769 [Rhodospirillum centenum SW]
 gi|209958530|gb|ACI99166.1| membrane protein, putative [Rhodospirillum centenum SW]
          Length = 370

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 95/322 (29%), Gaps = 14/322 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L+F +    PV  A ++         +   +        A + T++++         L
Sbjct: 45  YTLHFTREVLLPVFLAFLLSLLLRGPVKAL-RRLHLPEPLGAALVTLALLAAAGGLAYVL 103

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                  ++ L   +    +    +   +          +  T     P  + +   +  
Sbjct: 104 SEPATAWVRRLPVILSEVREKFGDIQAQIEQARLATERLQQMTGAGDAPPEVVVRGPSLA 163

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                      A     + L +            F      ++   L SL       +  
Sbjct: 164 AEILSQTQIVMAQAAVTLALTFF-----------FLAFGRHTLESVLRSLPHVRDRLHLV 212

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I   V   I +  + +T+I      V  +  W  G+P+ V  G I  ++  IP      
Sbjct: 213 DIVNTVQINISAYLMTITLINSALAFVTATLLWALGMPNPVLFGGIAGLLNFIPYIGSAC 272

Query: 262 FTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            T +     LL     +          +   +    + P +VG  + L  +  F  ++  
Sbjct: 273 TTIILAIVALLSFDTWWAVLLPPACFIMLTALEGNFVTPTIVGRRLTLNPIFVFATVLFW 332

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
               G+ G  +   ++A+  ++
Sbjct: 333 GWLWGMPGALLAVPILAVFKIL 354


>gi|240103191|ref|YP_002959500.1| hypothetical protein TGAM_1134 [Thermococcus gammatolerans EJ3]
 gi|239910745|gb|ACS33636.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 335

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 60/348 (17%), Positives = 140/348 (40%), Gaps = 29/348 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   + + I+ +S   ++    P+   +++ + ++P++     +     + L + A + 
Sbjct: 8   VVWTVVSLIILYLSWRTVRPLVTPLFFGVLLAYIAYPLHMRLRRRFSAHESALILTAIMI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            +   ++    L           +  V     +   V  WLS +         + +    
Sbjct: 68  GLGTILLVFFTLLS---------IKLVNRFYMNVKDVLAWLSSLQFSGTLQTFFGQ---- 114

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +++  +  +  + S F      Y L +I  + A ++    G  + + + 
Sbjct: 115 -----------VQSQIVPKLTDYVSSFTFSVPKYLLQLIVFLFAFYYALVYGEKLREFIL 163

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS---HVALGV 246
           SL       +  +I     K + +      ++ + +G ++   Y + GV      +  G 
Sbjct: 164 SLVPENQAPFIVEILNRTDKTLDALVRAWLLLNVAKGFLMTIGYIIFGVGDVYTAIIAGF 223

Query: 247 ITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGP 304
           +T + + +P     + + A +IYL +KG++  A  + ++GA+ +  + D T+RP LV   
Sbjct: 224 LTFLFSFVPLLEGWMLWVAGAIYLYMKGSLLGAIGIAVYGAVLVSPLPDYTVRPMLVAKD 283

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +L     F G++GG    GL GL +GPV++++  V+ KE      + 
Sbjct: 284 AELDETLVFIGMLGGTWAFGLKGLLLGPVILSIALVLLKEWKKRTSDR 331


>gi|46578545|ref|YP_009353.1| hypothetical protein DVU0128 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603874|ref|YP_968274.1| hypothetical protein Dvul_2836 [Desulfovibrio vulgaris DP4]
 gi|46447956|gb|AAS94612.1| membrane protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564103|gb|ABM29847.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris DP4]
 gi|311232471|gb|ADP85325.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris RCH1]
          Length = 352

 Score = 93.5 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 100/316 (31%), Gaps = 4/316 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            RW+++            F   +  A  +     P+     + +       A + T    
Sbjct: 3   TRWLLLAAFAAGAALFSSFLKALFFAACLACAFRPLSRRLEAWRG--PLVAAGLTTALAG 60

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              ++P+  +      +  + ++ +    +           +   + A       L    
Sbjct: 61  MCLVIPVAVVGSLAAPQAVQGLAVLDGLRESNWFTSPEAQQLVDDIDARLRDLPGLEGGL 120

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +   +                   L+  L    +++ +F F      I +   +L
Sbjct: 121 RGLARNAAGILGTAARTALAGGVGLAGGALNAVLQGFIVLMLIFVFTAYARHIQRFALAL 180

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 A   +        +     G+ ++A  +G++ G  + +AGVP     G I A++
Sbjct: 181 LPMP-RAMLDRCVTAFRGAVVGVLAGVVLVAAIQGVLCGIGFAVAGVPQAAFWGFIAAMV 239

Query: 252 AMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A IP    +  +     +L   G    A  L LW AI +   D  LRP  +   I+ P  
Sbjct: 240 APIPVVGTMAVWIPACAWLWFAGKTTAAIGLVLWSAIIVSGSDNILRPIFLKTGIEAPIA 299

Query: 311 PTFFGLVGGVRTMGLL 326
             F  ++ G+   G +
Sbjct: 300 LIFLAIICGLAAFGPM 315


>gi|312143672|ref|YP_003995118.1| sporulation integral membrane protein YtvI [Halanaerobium sp.
           'sapolanicus']
 gi|311904323|gb|ADQ14764.1| sporulation integral membrane protein YtvI [Halanaerobium sp.
           'sapolanicus']
          Length = 353

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 106/325 (32%), Gaps = 4/325 (1%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +F P + A +I     PI             F  +I  + V+ +F   ++       LE+
Sbjct: 30  YFTPFIIAAVIASLINPIVDILDKNIPVHRGFSVLIVLLLVVVIFASFIIIGGAQIYLEL 89

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L+  +    +      +WL++    + A     +     Q     +   L     D I
Sbjct: 90  NRLLRNLPDF-RTIDTQIQWLAEQNQQLEALIESWEISEAVQESIRANIQLLYNGIRDAI 148

Query: 150 PRFASRF---GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
               +             + +    IA FF  RD   I   L +L           +   
Sbjct: 149 ISVINNILEMLTRLPSVFMILFISFIATFFISRDRDDIKHFLVNLFPEDVKPKIANVFIQ 208

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +          + I+    G + G    L G    V +G+  AI+ +IP   P       
Sbjct: 209 LNISAVGYIRALLILISISGTIAGVGVHLMGFEYAVIIGLTAAILDLIPIIGPALLFYPW 268

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I + I    F          + L  V       ++G  + +  L T   L  G R +G +
Sbjct: 269 IIVSIIYGNFTQAFSLFLLHLFLAGVRSASEGKIMGENLGVHPLATMIALFAGFRILGAI 328

Query: 327 GLFIGPVLMALIAVIWKESIMAIKE 351
           G  +GP  + +I  +    ++ I++
Sbjct: 329 GFVVGPTFLVIIKAVTDSELVNIRD 353


>gi|300764159|ref|ZP_07074154.1| hypothetical protein LMHG_10132 [Listeria monocytogenes FSL N1-017]
 gi|300515149|gb|EFK42201.1| hypothetical protein LMHG_10132 [Listeria monocytogenes FSL N1-017]
          Length = 348

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 110/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVHVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|315501555|ref|YP_004080442.1| hypothetical protein ML5_0744 [Micromonospora sp. L5]
 gi|315408174|gb|ADU06291.1| protein of unknown function UPF0118 [Micromonospora sp. L5]
          Length = 383

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 60/176 (34%), Gaps = 1/176 (0%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG S+ + +             +  R   + + +   G  IIA  + + +G A  +  V
Sbjct: 188 KDGRSMWRWVLRRLTGPRRELTAEAGRAGWRTLGAYSRGTMIIAAIDAIGIGLALVVLRV 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L +IT +   +P        AV++ + +       A            I    L 
Sbjct: 248 PLALPLALITFLGGFVPIIGATVAGAVAVLVALAANGPTTALLTLAAVIAVQQIEGNLLE 307

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P ++   ++L        +  G    G+ G F+   + A++  +           +
Sbjct: 308 PLVMRRQVQLHPAVILVVVTAGTLVAGVAGAFVSVPIAAVLWRVLDTVQRHRAAER 363


>gi|289580791|ref|YP_003479257.1| hypothetical protein Nmag_1111 [Natrialba magadii ATCC 43099]
 gi|289530344|gb|ADD04695.1| protein of unknown function UPF0118 [Natrialba magadii ATCC 43099]
          Length = 381

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 62/342 (18%), Positives = 129/342 (37%), Gaps = 11/342 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M         +++ +  ++   +      VL A ++ F  +P +     +        A+
Sbjct: 1   MDVRTAAFVLLLLVLGAIATLMVAPLLQYVLGAALLAFILYPTHERLEPRLGTRP--SAL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + TV  +   IVPL+ +    +  +   V     A+                     + T
Sbjct: 59  LLTVVAIVGAIVPLMLVSLIVLDTVVSFVVGFDAAST-------VDEIRTIAHDDFGIDT 111

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +   ++  I          ++             ++  + ++  I  L++   DG   
Sbjct: 112 EQIQSLETAVIQELENSAAGALELALFELVGLLNRGMEMGIGLLVFIFLLYYLLVDGDLF 171

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L  +   L     +++   +  V  +      ++A+ EGL+ G  ++L GVP+    
Sbjct: 172 VAWLREVVP-LKDHIREELFTEINVVTWAVIKSHVLVAVIEGLLGGLGFYLLGVPNVAFW 230

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            VI  I++ +P     + +     YLL+      A  + L+G   L +VD  LR ++V  
Sbjct: 231 TVIMIIVSFLPAIGVWLVWGPAVGYLLMTAGPVGAVAMLLYGITVLSLVDNYLRAYVVDR 290

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              L       G++GG+  +G++GLF+GPVL+A+        
Sbjct: 291 GSGLHPAVVIVGVIGGIYLLGIMGLFLGPVLLAVFKAGLNVF 332


>gi|167854953|ref|ZP_02477728.1| ribosome recycling factor [Haemophilus parasuis 29755]
 gi|167853910|gb|EDS25149.1| ribosome recycling factor [Haemophilus parasuis 29755]
          Length = 346

 Score = 93.1 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 114/344 (33%), Gaps = 17/344 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +     Q ++    + IIL  +        P L +L I     PI     S K     
Sbjct: 1   MEQNSSLTQILVATAAIVIILAGIKLSVEIVIPFLLSLFIAIICSPIIKYLTSHKV--PL 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+     +  L    L  L    + E    + +  +     I     L D        
Sbjct: 59  WLAITILFILFLLGFFFLAGLINSTVQEFTASIPQYKILLSERIAAAMLLVDNW------ 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                ++    S + + E    +  ++F+ R    F  +  +  + ++ ++  LF     
Sbjct: 113 -----NIPVSISREQIQEQLDPSIIMNFVSRLLLSFSGVVTNIFVLLLVVVFMLFEAPTA 167

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L     +      +     V + + S     TI+++  G+ +     +A V  
Sbjct: 168 KHKLIVALR---GNKDVESEESHINRVLQGVISYLGIKTIVSLLTGISIWVLLEIADVQY 224

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V  G ++ ++  IP    I     +++   +         + +       ++   L P 
Sbjct: 225 AVLWGTLSFLLNYIPNIGSIIAGVPIAVQAFLLNGFSVGLGVSVGIIAINMVISNILEPR 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 285 MMGRTLGLSTLIVFLSLLFWGWLLGTVGMLLSVPLTMALKIALE 328


>gi|325290688|ref|YP_004266869.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966089|gb|ADY56868.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 357

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 94/311 (30%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             ++     F P + A        P+      + +       VI  ++ +        FL
Sbjct: 26  YLIFTTFPHFVPFILAYFTATALDPLTCQLGRRLKIPLVPAVVITNLTFLGCLAFLFFFL 85

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                L+  +L S +             LS     +         L     L  L     
Sbjct: 86  ASRIYLQSLDLFSYIQDHLPQIQAWFGLLSKDISSLLELLPPGLSLQLTNGLNNLLSEIT 145

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
             N    +  +         ++    I   +++F F      I  +  S  +        
Sbjct: 146 NPNLFAALGLYTYGLSTAIPNFFFLAIIYFVSVFLFQLKLTEIHSRFYSFFKESSKKKVL 205

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I   + +          I++    ++  +   L GV     +     ++ ++P     S
Sbjct: 206 FIFSDLRQATLGFLKAQLILSTLTYILSFAGLTLLGVKYAYVIAFFITLVDVLPILGTGS 265

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           F     ++ +           L   I + ++ + L P ++G  I L  L T   +  G +
Sbjct: 266 FFVPWAFVTLLLGNTFLAAGLLVVFIIILVIRRALEPKILGESIGLSALATLMSIWLGFK 325

Query: 322 TMGLLGLFIGP 332
            +G++G+F+ P
Sbjct: 326 IIGVVGIFLFP 336


>gi|299822402|ref|ZP_07054288.1| membrane protein [Listeria grayi DSM 20601]
 gi|299815931|gb|EFI83169.1| membrane protein [Listeria grayi DSM 20601]
          Length = 350

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 109/351 (31%), Gaps = 19/351 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + + + +   R +   +++  LY L+     +L   I  F +  +    +   +     +
Sbjct: 5   QKLFHNKSFQRVLTFILLIGILYLLRSELNLILLTFIFAFIATRLERLILRWVKIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            VI  + V       +  +    + ++ ELV   V    H                    
Sbjct: 65  VVILYILVTLGIYAGITHVLPVLIKQISELVDLGVKLYHHPPQ----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    + K          G D I      FG + + + L++I  +       R   
Sbjct: 108 NGFTDWLLDTTKNSHIQSYLRQGADLIMDSLKSFGALGMSFFLALILSLFFSLEKERVAK 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             +Q   S    L+        +              +IA+   L+   A +L   P  +
Sbjct: 168 FTAQFQTSKLSFLY-DNLAYFGKKFVSTFGVVLEAQLVIAVINTLITSLALFLMDFPQML 226

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  +  +IP    I     +++     G + +   L +   +   I    L P L+
Sbjct: 227 SLVIMVFLFGLIPVAGVIISCIPLTVIAYTIGGVEDVIYLLITIVVVHCIETYFLNPRLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                LP   TF  L+      G+ GL IG  +   +  I        K+ 
Sbjct: 287 ASKTSLPIFYTFIVLIFSESYFGVWGLIIGIPVFVFLLDILDVRNEEQKQK 337


>gi|313157302|gb|EFR56727.1| putative membrane protein [Alistipes sp. HGB5]
          Length = 368

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/349 (13%), Positives = 118/349 (33%), Gaps = 8/349 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I    +   +L  +++ +     VL + ++     P+     +   +       +A +
Sbjct: 10  RFIAGAAVAAAVLFLVWYFRSIVVYVLISAVLAVMGNPLVKRLAALHIKGWKVPRWLAAL 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + +  V L  L    +  +   + ++   +   +             +  E +    S
Sbjct: 70  ATLIVIWVVLATLCSLFVPLVFNKIYQLSNVDFATVVASIEEPIARAQSYLHEFFAMPES 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                + L+    +   I+ +    +    + L   ++I  +    FFF RD       +
Sbjct: 130 TFSLSEALASALKQVIDIESLNTVFASIVNVVLSSVIAIFSITFITFFFLRDEGLFYAMI 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP--SHVALGV 246
            ++    +     +    V  ++   F G+   ++   + +       G+       +G+
Sbjct: 190 TAMFPERYHENITRALDSVTLLLARYFTGILSESLLLMVAVSLTMMAFGMKAADAAFIGL 249

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNI------FNATCLFLWGAIELFIVDKTLRPFL 300
           +  +M ++P   P+    VS+++ I   I        A  +     I   + D  L+P L
Sbjct: 250 VMGVMNVVPYAGPLIGGVVSVFVGIVTPIGGMTVGHTAVVIIGSLLILKGLDDFVLQPTL 309

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               +K   L  F  ++      G+LG+ +      ++ V  KE     
Sbjct: 310 YSSRVKAHPLEIFLVILIAGSLAGILGMLLAIPSYTVLRVFAKEFFSQF 358


>gi|253731994|ref|ZP_04866159.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724235|gb|EES92964.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 185

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 68/163 (41%)

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++    F   +  +   +   + S   G  I++   G++L   Y + G+   + L  I A
Sbjct: 1   NIMPPKFRKDFHDLLEKMSVQVGSYIQGQIIVSFCIGILLFIGYSVIGLKYSLVLASIAA 60

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +++P   P    + +I +    + +    L +   +  F+    + P ++G  +K+  
Sbjct: 61  VTSVVPYLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHP 120

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L   F L+   + +G++G+ +G    A++ V+        K  
Sbjct: 121 LTIIFILLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRR 163


>gi|46907181|ref|YP_013570.1| hypothetical protein LMOf2365_0969 [Listeria monocytogenes str. 4b
           F2365]
 gi|226223567|ref|YP_002757674.1| hypothetical protein Lm4b_00969 [Listeria monocytogenes Clip81459]
 gi|254823780|ref|ZP_05228781.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254993695|ref|ZP_05275885.1| hypothetical protein LmonocytoFSL_12398 [Listeria monocytogenes FSL
           J2-064]
 gi|255520753|ref|ZP_05387990.1| hypothetical protein LmonocFSL_05921 [Listeria monocytogenes FSL
           J1-175]
 gi|46880448|gb|AAT03747.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876029|emb|CAS04735.1| Conserved hypothetical membrane protein [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293593001|gb|EFG00762.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
          Length = 348

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 110/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|300857402|ref|YP_003782386.1| hypothetical protein CLJU_c42830 [Clostridium ljungdahlii DSM
           13528]
 gi|300437517|gb|ADK17284.1| conserved membrane protein [Clostridium ljungdahlii DSM 13528]
          Length = 351

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 104/339 (30%), Gaps = 3/339 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +  +  ++  II +  +    +  P + A                K   +    ++I
Sbjct: 7   KINRISLFIILYTIIFLVFFSTLNYTLPFVLAFAFALILKRPTIFISRKLRINHALSSLI 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIPGGMWASELW 123
            T+    + I  L F       E  +L     L            +              
Sbjct: 67  TTIIFFTVIITVLSFGITVVTQETIQLGKNTQLYISRNSDNVYNSFYKLQKYYNNLDPYI 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              L    +  I   + +       +               + I F ++A +FF RD  S
Sbjct: 127 INALEKNFTSFITKLSNIAVTVSGKLVSSLINLLTTIPYILMVIFFTLLATYFFTRDMTS 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               +++L          KI     +++ +  L   II +   L     + L  +   + 
Sbjct: 187 SKISMNTLIPQNKTDKILKIYNESKRMLENYILSYLIIILITFLETLIVFSLFKIKYALI 246

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L +I AI  ++P       +  ++I  L   N +      +   I + ++ + + P +V 
Sbjct: 247 LSIICAIADLLPIIGIGAIYLPLAIIYLAIFNNYITCTGLIISYILVSVIRQIIEPKIVS 306

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + +  +     L  G++  G +G+     L+    + 
Sbjct: 307 SSLGVHPVAVLAALFIGLKADGFIGIIFCIFLVVFFNIF 345


>gi|152992184|ref|YP_001357905.1| hypothetical protein SUN_0589 [Sulfurovum sp. NBC37-1]
 gi|151424045|dbj|BAF71548.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 345

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 103/335 (30%), Gaps = 25/335 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +M    + IIL  +        P L AL +     P Y     K         +I  + 
Sbjct: 11  TLMVMASIVIILAGIKMAAVIIVPFLLALFLATILSPFYLWL-KKMGVHEILALLIIVLF 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +    +  +        + +             +   L +    +   +      + 
Sbjct: 70  LFLVISSMITLIGNSVQDFSQNVPMYEAKLRTDLSHIFDRLDNWGIHVPKDDFLAMFHT- 128

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                         + + +I      FG +  +  + I+ +I  L    +    ++Q   
Sbjct: 129 -------------RSVMHYIAGTLRSFGSLLTNSFMIIMTVIFMLMEISQFTAKLAQTNV 175

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                            V   I+   L  T+ +   GL++     + G+   V  G++  
Sbjct: 176 KGL---------ATVTEVSGKIKHYILLKTLTSAATGLIITIILKMLGIHYAVLWGLLAF 226

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  IP    I       +  L++ NI  A        +   ++   L P ++G  + L 
Sbjct: 227 LLNFIPNIGSILAAIPAVMMALVQFNITTALIAAGAYLLVNVLIGSILEPRILGKGLGLS 286

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L  F  L+     +G +G+ +   L  +I ++  
Sbjct: 287 TLIVFLSLIFWGWLLGPIGMLLSVPLTVIIKIVLN 321


>gi|302384825|ref|YP_003820647.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
 gi|302195453|gb|ADL03024.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
          Length = 367

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 43/363 (11%), Positives = 116/363 (31%), Gaps = 13/363 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE---- 57
           + +    + ++   +   +  S  +L     P L A +   +  P       K       
Sbjct: 3   KPSRKLKKTLLILGVTGAVYFSFRYLLPLVIPFLIAYVFALSLRPSALWIERKTRFAIKG 62

Query: 58  -----SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
                    +  I  +  M +F + L        +E + L+  + +              
Sbjct: 63  REISVPLAMIGGIEIILFMIVFGIILYVGGRKIFMEARLLLQNLPVILGEIDRWLMDNCS 122

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                             + +    +  +K   + F+   +       +   + +I ++I
Sbjct: 123 FAERFLKLPDGYMV-EVVRDIISGGQVAIKGRIMPFLMVNSMTIMKWMVQATVILIILLI 181

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
           A     ++   I ++ D+         +  + R +  V  +       I +   +V    
Sbjct: 182 ATVLSLQEMDEIRERRDNSIFCF---EYAMLGRRLTTVGSAWLKTQGAIMLFTMVVCSIG 238

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            +L G P  +  G+   ++  +P     +         +    +      +   +  + +
Sbjct: 239 LFLLGNPYFILFGIGIGLLDALPIFGTGTVFIPWALFSMINKNWKYGTGLILIYVICYFL 298

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            + +   ++GG + L  L T   +  G++  GLLG  +GP+ + ++  I +   ++   +
Sbjct: 299 REIMEAKIMGGKVGLTPLETLASMYVGLQLFGLLGFILGPIGLLIVEDIVEVYEVSYCHD 358

Query: 353 KEK 355
            +K
Sbjct: 359 GKK 361


>gi|295095978|emb|CBK85068.1| Predicted permease [Enterobacter cloacae subsp. cloacae NCTC 9394]
          Length = 346

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 108/333 (32%), Gaps = 22/333 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLMIILTGVRFAADIIVPFILALFIAVILNPLVQRMVRLRIPR-----VLAIS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + IV ++ L  Y    + EL   +             +          E W +   
Sbjct: 67  LLISIIIVAMVLLVAYLGTSLNELARTLPTYRSSLATPLLQI----------EPWLQRAG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S++ L +       +  +    ++         L  + ++  L    +    +   +
Sbjct: 117 IEVSVEELLKYIDPNAAMTIVTSLLAQLSNAMTSIFLLFLTVVFMLLEVPQLPAKLQHIM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I++  GLV+        V      G++ 
Sbjct: 177 VR------PVEGMGAIQRALDSVSRYLVLKTAISLVTGLVVWGMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    +      I  +L+   +++A  L     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPILQVLVFSGLYDALILLAGYLVINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             L  F  L+     +G +G+ +   L  ++ +
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKI 323


>gi|220908661|ref|YP_002483972.1| hypothetical protein Cyan7425_3286 [Cyanothece sp. PCC 7425]
 gi|219865272|gb|ACL45611.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 354

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 48/363 (13%), Positives = 110/363 (30%), Gaps = 23/363 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFIS 53
           MR      + ++  + + I+ ++++ L                A ++      +      
Sbjct: 1   MRRPNSWRRLLILGLSVPILALNIWILGQLLLYFEQLFTVLTLAAVLALLLNYLVQGLE- 59

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +         +   +  + + ++    L    + +  +L+  +    + G     WL   
Sbjct: 60  RLGLKRGQAILCVLLLTLAILVLLGFVLVPLVIQQATQLLEGLPTWLETGNQNLNWLGRF 119

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                      +  +            L    I  + R      ++ L +          
Sbjct: 120 AEQRRIPLKLEQISNQIADQIRGLVGSLPGVAIGTLGRLLDTILILVLAF---------- 169

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
             +    G  + Q L +L           +S  +    +  F+   ++A    L +    
Sbjct: 170 --YMLFYGGRLWQGLINLLPVPLGPI---LSHSLQLNFQRFFIVQLLLACFMVLAMLPVV 224

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
               +   +   ++  +  +IP         +   L++  N++ A  + +   I   I D
Sbjct: 225 LALQINFGLLFALVIGVAQLIPVIGATVGIGIVTLLVMLQNLWLAVQVAIAAVILQQIKD 284

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P L+G  I L  L  F  L+ G R  GLLG  +   +   I   ++E     +   
Sbjct: 285 NVLSPKLLGDVIGLNPLWQFIALLIGARVAGLLGAILSIPIAGTIKATFEEMREFYQSLA 344

Query: 354 EKI 356
           E  
Sbjct: 345 ELP 347


>gi|170761594|ref|YP_001788976.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A3 str. Loch Maree]
 gi|169408583|gb|ACA56994.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 351

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 101/326 (30%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I  I  +  +    +  P + A +         +  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LIFFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEGEISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D    +
Sbjct: 129 SIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSVPYILMLILFTLLSTYFFTKDITKHN 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L  +  +   + +  I     +++    L    +           +++  +   +   
Sbjct: 189 NKLSKIIFNEHSSKFSHIYLESKRMLNGYILSYLTLIGITFFETLIIFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +  AI   +P     +       + I         +  L     +  + + L P L+   
Sbjct: 249 ITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLISYAAVSTIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPISILAAIFIGLKANGISGMFF 334


>gi|116070721|ref|ZP_01467990.1| hypothetical protein BL107_13785 [Synechococcus sp. BL107]
 gi|116066126|gb|EAU71883.1| hypothetical protein BL107_13785 [Synechococcus sp. BL107]
          Length = 338

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 88/300 (29%), Gaps = 3/300 (1%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++     + + +++      +      ++    +   VI    ++ +F V L  +    +
Sbjct: 1   MREVLLLLFAGVVVAMALCTLVGILRERRPMGRSLALVICLGGLLTIFTVILTVVIPPFL 60

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E   L+ ++  A Q  + +     D             +L                +  
Sbjct: 61  EEFAVLLQQLPKAAQTLLGLLMDWIDGISQAIYGADSASNLDELGVSDPSKLVPDGQSIA 120

Query: 147 ---DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                             +  L ++F++           +       L    +     ++
Sbjct: 121 AGLGSGVLGLLGLAGNVGNAVLRLLFVVAVALMVSVQPQAYRGVGLQLVPSFYRRRAAEV 180

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
                + + S  +G+ I ++    + G A  L GV   +A  ++  ++ +IP   P   T
Sbjct: 181 LDRCGQALSSWMVGVLISSVAVSALCGIALSLLGVKLVLANALLAGLLNIIPNVGPTMST 240

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              + + +    + +  +     +   +    + P ++   +KL    T           
Sbjct: 241 VFPMAVAVLDAPWKSIAVLGAYVVIQNMESYVITPSVMHHQVKLLPGLTLAAQFVFTLMF 300


>gi|269956187|ref|YP_003325976.1| hypothetical protein Xcel_1387 [Xylanimonas cellulosilytica DSM
           15894]
 gi|269304868|gb|ACZ30418.1| protein of unknown function UPF0118 [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 369

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 93/342 (27%), Gaps = 19/342 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +      F+I  ++  + G   P++ A ++G    P+      +        A    V+
Sbjct: 25  VVGIAAAAFVIYSAVSLVSGLAIPLVVAAVLGVLLHPVVDRLE-RLGLPRGLGASAVLVA 83

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +  V +       + +  E+V ++         +                  +    
Sbjct: 84  LAVVLGVAVWLTVVGVVEQSTEIVDRLTRGLAELASL----------------EVQFAGT 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L ++                          + +     +  L++   D   +     
Sbjct: 128 SVDLSVVDLGDATAAISGGAASLFGSVFSSAAAFAMGTFIAVFFLYYILADWHRLKVLAT 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        +       +R  F  MT   +   + +  A  L  VP   ++ ++T 
Sbjct: 188 RHTAIGV-TSGHDVVEGATTTLRRYFGAMTSSNLVSAVAIAIAAALLDVPLAFSIALVTF 246

Query: 250 IMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + + +P    I       +  L       A  L     +   ++   +   L    ++L 
Sbjct: 247 VTSYVPFLGAIFSGAFAVLIALGSRGPVQALVLLGVVIVMQNVLQTLILTKLSSDRLRLH 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +      + G    GLLG  +   L  ++  I        +
Sbjct: 307 PIVNLGSTIVGTVFAGLLGATLSAPLTVVLRDILGHVRRRGE 348


>gi|23011708|ref|ZP_00051989.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 454

 Score = 93.1 bits (230), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 2/158 (1%)

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L                   +   F+   ++ +  GLV+G   W  GVPS +  GVI 
Sbjct: 22  IRLAGSSDLRRTPAAIDDATARLSRFFIAQLVLNLAFGLVIGVGLWFIGVPSPILFGVIA 81

Query: 249 AIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            I   +P    +      ++I + +      A  + +   +   I    + P L G    
Sbjct: 82  GIARFVPYIGAVISAVLPLAIAVAVDPGWSMAIQVAILFVVVEPIAGHVIEPLLYGHSTG 141

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +  +             G +GL +   L   + V+ + 
Sbjct: 142 ISPVAVILAATIWTFLWGPIGLLLATPLTVCLVVLGRH 179


>gi|148381571|ref|YP_001256112.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932794|ref|YP_001385948.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. ATCC 19397]
 gi|153934624|ref|YP_001389355.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. Hall]
 gi|148291055|emb|CAL85192.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|152928838|gb|ABS34338.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. ATCC 19397]
 gi|152930538|gb|ABS36037.1| sporulation integral membrane protein YtvI [Clostridium botulinum A
           str. Hall]
          Length = 351

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 36/326 (11%), Positives = 101/326 (30%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I  I  +  +    +  P + A +         +  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTISFLIFFKTLPYTLPFVLAFLFALVLKKPANYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LIFFSIIITLLFWGINLLVNEVIDFGRNAQAYLYSHEGEISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D    +
Sbjct: 129 SIEKTIGNSFSKISNIIVFITSKIVSSFIGLLTSVPYILMLILFTLLSTYFFTKDITKHN 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +  +   + +  I     K++    L    +           +++  +   +   
Sbjct: 189 NKISKIIFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +  AI   +P     +       + I         +  L     +  + + L P L+   
Sbjct: 249 ITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLISYAAVSTIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPISILAAIFIGLKANGISGMFF 334


>gi|170740020|ref|YP_001768675.1| hypothetical protein M446_1751 [Methylobacterium sp. 4-46]
 gi|168194294|gb|ACA16241.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 353

 Score = 93.1 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/340 (11%), Positives = 95/340 (27%), Gaps = 1/340 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++    L   +        + + ++ G     +                 + +V + 
Sbjct: 14  IGVVLFAAGLGLTWQAADTLLLIFAGILFGVFLDGLARLLGQVLPLGHGARLALVSVLLA 73

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +    F       +   L   +    +      R        +  +           
Sbjct: 74  GLVLGLAGFGGATVAAQADTLGQTLKQQTETVRGWLRTRGIDTRDLDLAGGEGAAKEGAA 133

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + + + L +     + + AS   +       ++  ++    F      +  + L   
Sbjct: 134 RGALPNPSALLSEAGRMLGQ-ASMIAVRVFGAIGNLFVVVALGLFLAAQPAAYREGLLRF 192

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                 +   +I     + +R    G   I     + +     L G+   + LG+   ++
Sbjct: 193 VPRRHRSRAAEILDATGETLRHWLFGQLAIMAAIFVCVWLGLSLLGLDGALILGLQAGLL 252

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP    +    V +   +   +  A        +   +    L PF+    + +P   
Sbjct: 253 CFIPTVGALVAGLVIVLAGLAQGLKGALGGLAIYLLVQALESYVLTPFIQKRALDIPPAT 312

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            F G +     +GL G+ +   LMA+  V+         E
Sbjct: 313 IFAGQILLGVLLGLWGIALALPLMAVAKVLLDRLYRPEIE 352


>gi|222085285|ref|YP_002543815.1| permease protein [Agrobacterium radiobacter K84]
 gi|221722733|gb|ACM25889.1| permease protein [Agrobacterium radiobacter K84]
          Length = 390

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 43/350 (12%), Positives = 101/350 (28%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + + + L  +Y +     PV  A+++G            K        AV+ + +
Sbjct: 56  WALIGIFLILALAGIYMMSIILIPVTLAVVVGMILGLAAEKLS-KLGVPRILNAVLLSSA 114

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  + +  L        +E            +P    +  +       E     ++ 
Sbjct: 115 VALVIFLFINALAGPLARLAQEGPDVFQRTVDRLMPFLERIKWLHITPQTFESGPMSINV 174

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +  +    I +    F  + L              F           + 
Sbjct: 175 LLENTGNVLHLVTNSLTPAIVQGLIFFAALML--------------FLAGRASLRKTLIM 220

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +           +I   V +V+   F    +I  G G+ +    +  G+ + +  GV   
Sbjct: 221 TFVSRTSRLTAIRIINAVEQVLGFYFATAALIYAGLGITMTIIAYAGGLSAPILWGVFAF 280

Query: 250 IMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP     + T       ++   +I  A    +        V+  + P ++G   +L
Sbjct: 281 LSSFIPFLGIATMTIALAIAGIITHDDIIFALAPAVVFFSIHLAVENLVFPAVMGRQWEL 340

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  +  E  +  K   +   
Sbjct: 341 NPFVVFLAIIFWTWMWGAVGAMLALPLSLVVMTVVNELFIEEKVQPQLPE 390


>gi|116073974|ref|ZP_01471236.1| hypothetical protein RS9916_36027 [Synechococcus sp. RS9916]
 gi|116069279|gb|EAU75031.1| hypothetical protein RS9916_36027 [Synechococcus sp. RS9916]
          Length = 350

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/323 (13%), Positives = 108/323 (33%), Gaps = 20/323 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAP-------VLSALIIGFTSWPIYSSFISKKEE 57
           M  P  +   + + +  ++LY  +    P        L++ +I F           +   
Sbjct: 1   MAWPIWLRWALALPLFTLNLYVCRQLLLPLAPFPGLFLTSALIAFLLDIPRRWLTRR-GL 59

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  +  +   ++    L    + ++ +L++ +    +        + +     
Sbjct: 60  PRWLAILVVALLTVGTLVLAGFTLVPLLIDQLVQLINALPSWLEAAEGWINRVQEWALQR 119

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                +    S   +          +     + +         L   ++I+ +++   FF
Sbjct: 120 GLPSDFGDLSSDLLTRI--------SQVASQLSQRLLGILGATLGTTINIVIVLVLAVFF 171

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
              G SI+  L       +      +   + +  R  F G  ++A+   L     + + G
Sbjct: 172 LLGGESITAGLARWLPDSWRNL---VVSTITRTFRGYFAGQVLLALILSLGQMVVFTVLG 228

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P  V   V+     ++P  + ++  AVS  L ++ +      + +   +   IVD+ ++
Sbjct: 229 IPYGVLFAVLIGFTTLLPYASALTIVAVSALLAVQ-DPSTGLEILVAAILVGQIVDQVIQ 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGV 320
           P L+G  + L        L  G 
Sbjct: 288 PHLMGNLLGLQPAWLLIVLPLGA 310


>gi|330465325|ref|YP_004403068.1| hypothetical protein VAB18032_06720 [Verrucosispora maris
           AB-18-032]
 gi|328808296|gb|AEB42468.1| hypothetical protein VAB18032_06720 [Verrucosispora maris
           AB-18-032]
          Length = 393

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 1/165 (0%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG ++                 +  R+  + + S   G  +IA  + + +G A  L GV
Sbjct: 197 KDGRAMWHWTLRRMTGPNREVAAEAGRVGWRTLGSYTRGTMLIAAIDAIGIGLALVLLGV 256

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLR 297
           P    L +IT I   +P        AV++ + +       A            I    L 
Sbjct: 257 PLAFPLALITFIGGFVPIIGATVAGAVAVLVALAANGPTTALLTLAAVIAVQQIEGNLLE 316

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P ++   ++L  +     +  G    G+ G F+   + A+   + 
Sbjct: 317 PLVMKRQVRLHPVVILLAVTAGTLIAGIAGAFVAVPIAAVAWRVI 361


>gi|323342143|ref|ZP_08082376.1| hypothetical protein HMPREF0357_10556 [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464568|gb|EFY09761.1| hypothetical protein HMPREF0357_10556 [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 364

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 99/321 (30%), Gaps = 11/321 (3%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +    K    P +    + +   PI   F             I  V  + L ++    + 
Sbjct: 43  AFELAKRILLPFVIGFALAYIVRPIAVFFEKY-NIKRAISVPITLVLFVVLIVLLFSSIL 101

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++ +L+   +   Q      + ++      WA +++ + +     +     T   
Sbjct: 102 PSLYTDISQLIGNSMDGIQQLYNYYKEINHNNPSPWADDIFKQVMGMLNGIVGQIPT--- 158

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +P  AS+F         + IF  I   +F  D  + +  +  +  ++ P     
Sbjct: 159 ------LPAAASQFLSKIFSTITTGIFSFIIGMYFVFDYENFTGSVLRIANNISPKLGNS 212

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   +   +      + +I     +     Y   G      LGV+TA   +IP   P   
Sbjct: 213 IIV-IDHAVSRYLGTLVVIMTITCIEYSLLYLAVGHNYAFVLGVLTAFGLLIPYIGPTVV 271

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             + I   +   +     L +   I   +    + P +     K+  L + F        
Sbjct: 272 HVLGILTALTLPLPRVIILTIGLVILSNVDGYVVSPMVYSKRDKIEPLWSLFAFFASSVL 331

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            G +G+ I   L   I  ++ 
Sbjct: 332 FGFVGILISMPLYFSIRALFN 352


>gi|288557140|ref|YP_003429207.1| hypothetical protein BpOF4_21599 [Bacillus pseudofirmus OF4]
 gi|288548434|gb|ADC52315.1| conserved sporulation related membrane protein [Bacillus
           pseudofirmus OF4]
          Length = 323

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 95/309 (30%), Gaps = 1/309 (0%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ A +      PI      ++        VI   S +    +  + +     + + E
Sbjct: 3   LPLVFAWLSAVLLSPIVRLLEKRR-IKHDVAVVIIFTSFLTFISLIGVLVITKIFMHINE 61

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            V        H       +       +              +    E+            
Sbjct: 62  FVQNAPTYLNHVTNAWVVIQYDFERKFEDLPPDFVNEINFHVINTLESTRIHLSNIDFIG 121

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             S F +    Y +S +  +IALF F  D  ++  +  S            +   + KV+
Sbjct: 122 GVSNFIVGIPSYLVSFLVYLIALFLFLLDLPTLKSKFYSFLTADTSNKLTYMLSRLRKVL 181

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
              F    I++I   ++             + + ++   + ++P    I       +   
Sbjct: 182 IGFFKAQFIVSIPIFILSYIGLLFIYPDIALIMALVIWFIDLVPLIGSIIILGPWAFYQF 241

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                         A+ L ++ +T+ P ++G  I L  L T   L  G+   G +GL +G
Sbjct: 242 IIGDTELAIKLTILAVVLLVIRRTVEPKIMGNQIGLSPLATLIALYLGLVLFGAIGLILG 301

Query: 332 PVLMALIAV 340
           P+L+     
Sbjct: 302 PLLVITFKS 310


>gi|315281657|ref|ZP_07870234.1| membrane protein YdbI [Listeria marthii FSL S4-120]
 gi|313614693|gb|EFR88260.1| membrane protein YdbI [Listeria marthii FSL S4-120]
          Length = 348

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 111/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFILLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRIRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     + ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAIFLYIAIVHFLPILIDQISQLVDSLVKIYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVQWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+   ++   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVATFGVVLEAQLMIALVNTVITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYTVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|300813434|ref|ZP_07093779.1| putative membrane protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
 gi|300512451|gb|EFK39606.1| putative membrane protein [Peptoniphilus sp. oral taxon 836 str.
           F0141]
          Length = 430

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/371 (13%), Positives = 111/371 (29%), Gaps = 40/371 (10%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ II      L      ++  +I  +   PI +    K  +            ++    
Sbjct: 65  LVTIIFEKYTILGYTLWSLIIGIIFAYVIDPIVNFLERKGIKRP-------FGVIIVYIT 117

Query: 76  VPLLF------LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
             ++F      +    + E+  L++ +                     +   L    L+ 
Sbjct: 118 TLIVFAILLVTVIPKTITEITNLLASLPPMIDSMSRGLTKFFYKLAEDYNINLPPSFLNM 177

Query: 130 PQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYC----------------------- 164
                        L TN  D +    + F     +                         
Sbjct: 178 LSGTTDGVSKSAKLVTNSQDPLTNMFNSFSNAITNILDNVQKSALDSLRSVVVKLYGLVT 237

Query: 165 --LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             L I+ ++I  F+F        +       + +      ++  +   ++    G  ++A
Sbjct: 238 STLKIVLVLIFSFYFSIGKEKYLKSFKKSIPNKYREDVNYLAVRINTSLQQFIRGRLLLA 297

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G +      +  V   + +G+IT I  +IP   P      ++          A  + 
Sbjct: 298 LFVGFLTMIYLLILRVDFAIVIGMITCIADIIPYIGPFLGFVPAVLFAFMDAPLKALWVS 357

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   I  +  +  L P L+G    L  L     ++ G    G+ G+ +   L+++I ++ 
Sbjct: 358 ILFIIIQWAENNILAPKLIGDSTGLNPLAVLISIIIGGGIFGIWGMVVSVPLVSIILILL 417

Query: 343 KESIMAIKENK 353
               +   ENK
Sbjct: 418 DFFKLKYNENK 428


>gi|254410689|ref|ZP_05024468.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196182895|gb|EDX77880.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 367

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 103/309 (33%), Gaps = 9/309 (2%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
               S   +         A+   +  + L     + LF   + + ++LVS++      G 
Sbjct: 55  NYPVSWLET-LGIKRGLAALFVFLVALLLLFAIGVTLFPLVITQAQQLVSRLPEWFDSGR 113

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                L      +         +             + +  ++     A       LD  
Sbjct: 114 RQLIMLDHRLEDLNLPISLDGLIIQINDRLKGQLQVIASKSLNLTLNLAVFTVTKVLDVL 173

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG 224
           L    +II+ F+  + G  + + L     +          R+     ++ F+G  IIA  
Sbjct: 174 L----IIISTFYLLQHGREVWRSLIEWLPNKVQRSASNTLRL---SFQNYFIGQIIIATC 226

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
               L S + L  VP  +  G    +MA++P G  +   A+   L+   +I     +   
Sbjct: 227 MASGLISLFILLKVPFGLLFGFTIGVMALVPFGGSV-GIALVTLLVALRDIGLGVQVLAV 285

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +   +V+  L P + G    L     F  L+ GVR  GLLG+ +      +I     E
Sbjct: 286 AVVFQQLVENLLAPRIFGRVTGLNPFWVFISLLIGVRVGGLLGVIVAVPTAVVIKEALVE 345

Query: 345 SIMAIKENK 353
              A K+  
Sbjct: 346 VRKARKDRN 354


>gi|22299806|ref|NP_683053.1| hypothetical protein tlr2263 [Thermosynechococcus elongatus BP-1]
 gi|22295990|dbj|BAC09815.1| tlr2263 [Thermosynechococcus elongatus BP-1]
          Length = 344

 Score = 92.7 bits (229), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 50/347 (14%), Positives = 108/347 (31%), Gaps = 23/347 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPV-------LSALIIGFTSWPIYSSFISKKE 56
                + +   +   +I+++L+  +  +          + A I+ F    +     ++  
Sbjct: 7   PQSWQRYLAYLITGPLIVLNLWVAEQVYLYFEYPINILVIAAILAFLLNQVVIRLSAR-G 65

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                   +  +  + +  V +L L    + + +EL++++           R L  +   
Sbjct: 66  LQRRQAIALVLLMTLVVASVLMLLLLPLAIQQAEELLNQLPELADTSNQNLRHLDQLLRR 125

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                     +                     I        +  +      + ++I   +
Sbjct: 126 YQFPVGVNDLMEELAIQIK------------GITALLPSVAITTVTRFFDTLLVLILTVY 173

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
               G  I + L  L    +        R+    IRS F     + +   L L       
Sbjct: 174 MLFYGSGIWRGLIQLVPKPWRQGVDDALRL---NIRSFFSAQLFLGLFMFLALIPFMVAL 230

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V       +I  +  +IP             L++  + + A  +FL   +   I D  L
Sbjct: 231 QVNFGFLFALIIGVAQLIPVVGATLGLGFVTLLILFQDAWLALNIFLIAVVLQQIKDNVL 290

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            P L+G  + L  L  F  L+ G R  G LG+ +   L A + ++ +
Sbjct: 291 APKLLGNLMGLNPLWQFIALLIGARVAGFLGILLAIPLAATVKMVLE 337


>gi|261405457|ref|YP_003241698.1| hypothetical protein GYMC10_1608 [Paenibacillus sp. Y412MC10]
 gi|261281920|gb|ACX63891.1| protein of unknown function UPF0118 [Paenibacillus sp. Y412MC10]
          Length = 387

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 93/317 (29%), Gaps = 4/317 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +++I++    L    APV  + ++     P       +      F A I+ +  +
Sbjct: 17  LIVLTVYLIMLIFSKLYQIAAPVFLSFLVFLIIEPFSKFLHRR-GLPKPFAAAISVLLFL 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +  L       + +   L   +    Q       +   +       +     L+   
Sbjct: 76  LVILGILFGAGALIVSQFMNLQDNLPAYTQTIQK--HFSETLMFLQTKLDALPPDLTDRL 133

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      T       +   R+   F   F  +  +    II  FF   +  S  +     
Sbjct: 134 NGYFQDITTFAQGAAESFFRYIVGFMGSFSSFIANFGVAIILAFFLSTEIGSWRRIAKDK 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                   +  +   V K I S       +     +++     + G  + +++ +I A+ 
Sbjct: 194 TPKTLKTAFVFLKDNVFKAIGSYIKAQMKLVSITFVIVYIGLLILGTGNSLSVALICAVF 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P           I  L            +     + I  + L P + G  I +    
Sbjct: 254 DVLPLLGVPVILIPWITYLFIVGNTGLAIGLIVLLAVVVISRQLLEPKITGNSIGVSSAF 313

Query: 312 TFFG-LVGGVRTMGLLG 327
                ++  +   G+ G
Sbjct: 314 LMLSFMMISLSIFGVAG 330


>gi|154148283|ref|YP_001406674.1| transport protein [Campylobacter hominis ATCC BAA-381]
 gi|153804292|gb|ABS51299.1| transport protein [Campylobacter hominis ATCC BAA-381]
          Length = 339

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 57/341 (16%), Positives = 114/341 (33%), Gaps = 20/341 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     ++    + II   L        P L A  I   + PI       K        +
Sbjct: 1   MKLQTFLITLASIVIIFAGLKAANSVVVPFLLATFIAIVTSPILDILEKVKIPR-----I 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ + V    +  L F+    +  M + + ++   N+    +              E   
Sbjct: 56  ISFILVTFCMLGFLAFIGSVAVGTMFDFLGQLPEFNRKFQIILN------------EWME 103

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
              +      I+ +  +     + I    S             +F+++ + F   +   +
Sbjct: 104 NLNNTEFRDMIVFDPNMFNLESNKIITTTSSLVRKTGSIMSMWLFILLLVAFMLFETRIM 163

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +++  L      A            ++      TI++   G+++GS  +   +P  V  
Sbjct: 164 QEKVKYLSVKYSNAIV--FVHSFVYNLKRYLFIKTIVSTATGIIIGSGLYYLNIPYAVLW 221

Query: 245 GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  IM  IP     ++        L+ GNI +A  + +       I+   L P LVG 
Sbjct: 222 GIVAFIMNYIPTIGSFVAAVPAVFIALLSGNISDAIWVIILYTATNTILGVILEPRLVGE 281

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + +  +   F L+     +G+ GLF+   L   I +  K 
Sbjct: 282 ELGISTITVLFSLLLWGYVLGIGGLFLAVPLTMTIQIALKI 322


>gi|311747691|ref|ZP_07721476.1| hypothetical protein ALPR1_15209 [Algoriphagus sp. PR1]
 gi|126575679|gb|EAZ79989.1| hypothetical protein ALPR1_15209 [Algoriphagus sp. PR1]
          Length = 361

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/339 (10%), Positives = 99/339 (29%), Gaps = 8/339 (2%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
             ++       ++ +LII     P+ +               +A +      +   + L 
Sbjct: 18  FGWYFSNITLYLVISLIIAALLRPMTNQLNDFHLLGQHIPRWLAIIISYSAIVFIFVLLS 77

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
           +     +   V  +   + + I     +       +                 L    + 
Sbjct: 78  FLFFPLINNQVLILSELDLNTIYEEINIPIQKVENFLFRYQLLESEPGYLFNQLKTQIID 137

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           T        F S          + ++ ++   FF   +   + + L +L  + +      
Sbjct: 138 TIKGIDFGAFISNILNTTSSVFIGLMAILFITFFLLLENGLLRRNLLNLIPNPYFELSVA 197

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               V K++ +   G+ +  +    +      + GV   + + +  A+  +IP   P+  
Sbjct: 198 TFTKVEKLLSNYLSGLLLQMLAIFSIASFGLTIVGVDYALTIALFAAVANLIPYAGPLLG 257

Query: 263 TAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
               I + +            +    +     +   + +  L+P +    +K   L  F 
Sbjct: 258 ATFGIIVGVSTGNYEQNQELNYLLLKILSVFGVVQVMDNIFLQPMIFSKSVKAHPLEIFV 317

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            +  G +  G+ G+     +  +  V + E     K  +
Sbjct: 318 VIFAGAKIAGITGMIFAIPVYTIFRVSFMEFYQGYKSYR 356


>gi|283785182|ref|YP_003365047.1| AI-2 transport protein TqsA [Citrobacter rodentium ICC168]
 gi|282948636|emb|CBG88227.1| AI-2 transport protein TqsA [Citrobacter rodentium ICC168]
          Length = 344

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 110/341 (32%), Gaps = 22/341 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    + K          I   
Sbjct: 12  KIVIMLGMLVIILTGIRFAADIIVPFILALFIAVVLNPLVQRMV-KLRVPRVLAISILMA 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + +V L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMVMVVLLAYLGTSLNELARTLPQYRSSLVIPLKHIEPWLLRSGIGVSVDELVKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + S     +N +  I         + L+           +        +I + +
Sbjct: 131 NAAMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPTKFKHLMTRPVEGMAAIQRAI 190

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS+                        +  T I+I  GLV+ +      V      G++ 
Sbjct: 191 DSV--------------------SHYLVLKTAISIVTGLVVWAMLAALEVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+ G +++A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQMLVFGGLYDALVVLAGYLVINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             L  F  L+     +G +G+ +   L  ++ +  ++++  
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTVAG 331


>gi|227495011|ref|ZP_03925327.1| membrane protein [Actinomyces coleocanis DSM 15436]
 gi|226831463|gb|EEH63846.1| membrane protein [Actinomyces coleocanis DSM 15436]
          Length = 357

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 110/343 (32%), Gaps = 18/343 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M         ++   I   L   +    P+++A I+ +         + K    S     
Sbjct: 1   MTLQNLTFAVLLAIAIGWLLVIGQNIILPIIAAFIVVYIFV-ETDKLVGKLPGISKLPDW 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    +  +FI  L  L     + ++EL++      ++ + +   ++D+ G         
Sbjct: 60  VRKFVIYVVFIGLLAGLISLFTVTIQELIAHSGTYQKNLVQIFSQVTDLVGEEHLPSWDE 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  ++ I +     T  +     F                   I + F + +  S 
Sbjct: 120 LRAKIIGAINIPAWLGWVTAQLSSASGFIFLIA--------------IYVAFIFGERSSF 165

Query: 185 SQQLDSLGEHLFPA-YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           SQ+L +       A   ++I   +   +       T++ +  GLV        G+     
Sbjct: 166 SQKLTAAFPDPVKAARAQQIISEINTKVGQYLGAKTLVNVILGLVSYVIMLAFGLDYAGF 225

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             ++ A++  IP    I    + + L      +   +  LF+       I+   + P LV
Sbjct: 226 WALLIALLNYIPYIGSIFGVLLPVLLSVVQFVSWPWSLALFVLLITAQTIMGNMVEPLLV 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           G  +          L       G+ G  +   + +++ +I+ E
Sbjct: 286 GRKVNQSAFVVLVALAFWSSLWGVSGAILAVPMTSILGIIFGE 328


>gi|261221912|ref|ZP_05936193.1| permease [Brucella ceti B1/94]
 gi|260920496|gb|EEX87149.1| permease [Brucella ceti B1/94]
          Length = 224

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 3/173 (1%)

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            +D     +   +  F+   D   +   +DS          ++I+R +   +     G  
Sbjct: 1   MIDIAGLFVVTPVVAFYMLLDWDRMVNSIDSWVPRKQLHTVRRIAREMNAAVAGFIRGQG 60

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIF 276
            + +  G        L G+   + +G    +++ IP        A++I +       +  
Sbjct: 61  TLCLILGTYYAIGLTLTGLNFGLLIGFFAGLISFIPYIGSFVGLALAIGVALVQFWPDWI 120

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
               +     +  FI    L+P LVG  + L  +   F L       G  G+ 
Sbjct: 121 MVCTVAAVFFLGQFIEGNILQPKLVGSSVGLHPVWLMFALFAFGSLFGFTGML 173


>gi|256752917|ref|ZP_05493750.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256748197|gb|EEU61268.1| protein of unknown function UPF0118 [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 235

 Score = 92.7 bits (229), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 71/207 (34%)

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +     +  +L       +        N   +    A +  +  L   + II + I  F+
Sbjct: 14  IQLKFNYLSYLPPQVEKVLDKNLGSLNNAFTYHIDSAFKSVITILKDAVDIIIIPIVTFY 73

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
           F +D     ++++ +    +   +  I + + K++         I+    +       L 
Sbjct: 74  FLKDKKVFKEEIERILPQKYSTKFFNILKKIDKILSKYLRAQIYISTFVAIFTMIGLSLI 133

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            V     +GV+  I+ +IP   PI     ++ + +  ++       +   +   + +  +
Sbjct: 134 KVKYAFLIGVLAGILNIIPYVGPILSIIPTVLIGLLDSLTKGFWALIICLLVQQVENAFI 193

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            P ++   + L  +   F L+ G    
Sbjct: 194 TPKIMSDSVGLHPVTVIFSLIAGGELF 220


>gi|311747559|ref|ZP_07721344.1| putative permease [Algoriphagus sp. PR1]
 gi|126575541|gb|EAZ79851.1| putative permease [Algoriphagus sp. PR1]
          Length = 361

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 103/338 (30%), Gaps = 22/338 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              +   + + +  + L        P++      F   P+ + F  ++         ++ 
Sbjct: 7   QNTVNLLLAIVLGAIILKEGDFILVPLVWGAFFAFALNPLSNWFELRRIPR-----GLSI 61

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + L  +  L L Y  + +M  L+ +        +       +    +   ++     
Sbjct: 62  FLSILLVSILFLGLMYLMLDQMIGLIGEFPKIGDSLMQKVGNYRNDLNELLGVQVPQFDS 121

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                    S+              A    +          F +  LF    +       
Sbjct: 122 IFDTEAIEWSKVNETVFATGQSITLAGIIPLYIFLLMYYKDFFVEFLFKRSSESNV---- 177

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                           +    KVI+    G+  +++   L+ G  ++L G+   +   V 
Sbjct: 178 -----------EVLNWAEETGKVIQHYLGGILKVSVIVALLAGLFFYLIGLKYFLLFAVF 226

Query: 248 TAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            A+M +IP        F A+    L    +F     FL       + +  + P +VG  +
Sbjct: 227 IALMNLIPYVGVFISSFFAILYVFLTTDTLFYPFITFLVLWGIQLLENNIITPLVVGAHV 286

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           ++  L     ++ G    G+ G+ +   L+ ++ +  +
Sbjct: 287 RVNALAVLLAILIGGWLWGISGMVLFIPLVGVLKITLE 324


>gi|260437802|ref|ZP_05791618.1| sporulation integral membrane protein YtvI [Butyrivibrio crossotus
           DSM 2876]
 gi|292809826|gb|EFF69031.1| sporulation integral membrane protein YtvI [Butyrivibrio crossotus
           DSM 2876]
          Length = 324

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 43/338 (12%), Positives = 112/338 (33%), Gaps = 32/338 (9%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++  +I +   ++    AP + ALII        +   +K     +   ++  ++ M
Sbjct: 14  VFAVVSGVIYIVFKYMLPVVAPFIIALIISVLVDRPVTFLENKCHIKRSIGTLVIVIAAM 73

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L  + + +     + ++ + ++K+                                   
Sbjct: 74  ALLCLFVCYGGKILVKQVYDFINKIEEY-----------------------------KLP 104

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               +    +    +  +   +  +   F      +   I+A  F   D  SI   +   
Sbjct: 105 FNLNMDIKVINEKIVSGVVDNSPGYISGFTMVFTGVAVFIMATVFISGDMSSIRSSVKK- 163

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             ++F      + R +  V+ +      II     ++     ++   P  + LG++   +
Sbjct: 164 --NIFGKEIIYLGRRLKTVLGNYLKTELIIMAITCVICCVGLFIMKNPYALLLGIVIGFV 221

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             +P     +     + +L+  +      + +   +  +   + L P L+G    +    
Sbjct: 222 DALPILGTGTIFLPWVLVLVFMHRLKQASMIMILYLICYYTRQFLEPKLMGDKFGMSPTV 281

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
               +  G++  G++G+F GPV + LI  I    I  +
Sbjct: 282 MLITIYAGLKLFGVMGVFTGPVALILIREISDIVIKKL 319


>gi|124023341|ref|YP_001017648.1| permease [Prochlorococcus marinus str. MIT 9303]
 gi|123963627|gb|ABM78383.1| Predicted permease [Prochlorococcus marinus str. MIT 9303]
          Length = 360

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 95/308 (30%), Gaps = 6/308 (1%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV-SVMCLFIVPLL 79
            V  + L+     + + +++      +     S+K    +   +I  V  V  +  +   
Sbjct: 16  GVLFWSLREVLIHLFAGVVLAMALCTLVGELRSRKPMPRSMALLICLVALV-LVVSMATA 74

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPV----PRWLSDIPGGMWASELWTKHLSHPQSLKI 135
            +      +  +L+ ++  A +    +        S +  G+  S+   +       L  
Sbjct: 75  IVVPPFTEQFHQLLLQLPSAAKELWKLAIGAINQTSAMVYGVNNSKGGWEEQLFANGLNA 134

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
           L +     +G+    +             + ++F++           +      SL    
Sbjct: 135 LPDGASLASGVREGLQGLLGLAGNLGSGLVQLLFVLAMSLMVAVQPTAYRDVAISLLPSF 194

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           +    + I       + S  +G+ I +    L+      L G+   +A  ++  ++ +IP
Sbjct: 195 YRRRARSILSQCGDALSSWMVGVLISSFCVALLAAIGLSLLGIKLVMANALLAGMLNVIP 254

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P   T   + + +    + A  +     +   +    + P ++   +KL    T   
Sbjct: 255 NVGPTLSTIFPMSVALLDAPWKAVAVLGLYVVIQNLESYVITPSVMHHQVKLLPGLTLTA 314

Query: 316 LVGGVRTM 323
                   
Sbjct: 315 QFVFTVVF 322


>gi|290770140|gb|ADD61900.1| putative protein [uncultured organism]
          Length = 310

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 130/329 (39%), Gaps = 20/329 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
              +L AL I             K++   +  A + T   +  F+VPL  + +  ++ ++
Sbjct: 1   MGGLLGALTIYILVRKQMMYLSDKRKMKRSIAATLITAEAILCFLVPLGLVVWLAVVNLQ 60

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +                  +  P  + A      ++   ++   +         I  +P
Sbjct: 61  NI------------------NLDPQAIIAPFEEAANIIKAKTGYYILGKDTVAYVISILP 102

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
           R           + ++I  ++  L+F    G  + Q ++ L         + +   +  +
Sbjct: 103 RIGQAIMGGISSFAVNIFVLVFVLYFMLIGGKKMEQYVNDLLP-FNDDNTQNVIHEINMI 161

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYL 269
           +RS  +G+ ++A+ +G V    YW+ G P+ +  G +T   ++IP     + +  +++Y+
Sbjct: 162 VRSNAIGIPLLAVIQGGVAMIGYWIFGAPNILFAGFLTCFASIIPMVGTALVWFPIAVYM 221

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            + GN   A  L ++G   +  +D  +R  +      +  L T FG+V G+   G +G+ 
Sbjct: 222 ALIGNWVQAIGLAIYGGAVISQLDNLIRFIIQKKMADIHPLITVFGVVIGLSLFGFMGVI 281

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISS 358
            GP+L++L  +          + + K + 
Sbjct: 282 FGPLLLSLFFLFVDMFKRGYLDARGKTTE 310


>gi|16800017|ref|NP_470285.1| hypothetical protein lin0948 [Listeria innocua Clip11262]
 gi|16413407|emb|CAC96179.1| lin0948 [Listeria innocua Clip11262]
 gi|313619684|gb|EFR91311.1| membrane protein YdbI [Listeria innocua FSL S4-378]
 gi|313624382|gb|EFR94403.1| membrane protein YdbI [Listeria innocua FSL J1-023]
          Length = 348

 Score = 92.4 bits (228), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 109/341 (31%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRIRIPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYCLVAMFLYVAIVHFLPILIDQISQLVDSLVKIYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NKIVQWIVGFLKESNIQKYLQTGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q L S    +F        +              +IA+   ++   A +L   P  +
Sbjct: 168 FTGQFLTSKVGFIFKE-AAFFGKKFVATFGVVLEAQLMIALVNTIITTIALYLMNFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+      G+ GL +G  +   +  I 
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDIL 327


>gi|298290162|ref|YP_003692101.1| hypothetical protein Snov_0146 [Starkeya novella DSM 506]
 gi|296926673|gb|ADH87482.1| protein of unknown function UPF0118 [Starkeya novella DSM 506]
          Length = 346

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/341 (12%), Positives = 97/341 (28%), Gaps = 25/341 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + ++    + +   +++  +   APV  AL +    WP+      +    +     +
Sbjct: 4   RTNRILLGICTVVLAGGAIFLARPVIAPVAFALFVMALVWPLQDRLQRRLPGLAAMAITL 63

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A   +    +       +      + LV+              WL               
Sbjct: 64  AVTILAVFVVG--YATVWGLSQTGRWLVTNAGRFQALYAETAAWLE-------------- 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                      + T   T    ++                  +  +I +     +   + 
Sbjct: 108 -----GHGLYSAGTLADTFSASWLIGTFQGLAGRVNGMLGFAVVTMIYVMLGLLEADIVR 162

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +L  L          + S       R+  +  T++++  GL + +     G+   +A G
Sbjct: 163 DKL--LAAGEAGGRLVRASAATAAKFRTYMMVRTVMSVLTGLFVWAVTAALGLDLALAFG 220

Query: 246 VITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+   +  IP   P+          L   G+   A  +F+   +  F     + P + G 
Sbjct: 221 VMAFALNYIPFIGPLVATLLPTFFALAQFGSWEAAVLVFVAMNVIQFFSGSYIEPRVAGR 280

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + +        +       G+ G FIG  L+       +E
Sbjct: 281 ALAMSPFLVLLSVFFWAFMWGIAGAFIGVPLVIAALTFCEE 321


>gi|282882731|ref|ZP_06291338.1| putative permease [Peptoniphilus lacrimalis 315-B]
 gi|281297392|gb|EFA89881.1| putative permease [Peptoniphilus lacrimalis 315-B]
          Length = 430

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/371 (12%), Positives = 111/371 (29%), Gaps = 40/371 (10%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ II      L      ++  +I  +   PI +    K  +            ++    
Sbjct: 65  LVTIIFEKYTILGYTLWSLIIGIIFAYVIDPIVNFLERKGIKRP-------FGVIIVYIT 117

Query: 76  VPLLF------LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
             ++F      +    + E+  L++ +                     +   L    L+ 
Sbjct: 118 TLIVFAILLVTVIPKTITEITNLLASLPPMIDSMSRGLTKFFYKLAEDYNINLPPSFLNM 177

Query: 130 PQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYC----------------------- 164
                        L TN  D +    + F     +                         
Sbjct: 178 LSGTTDGVSKSAKLVTNSQDPLTNMFNSFSNAITNILDNVQKSALDSLRSVVVKLYGLVT 237

Query: 165 --LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             L I+ ++I  F+F        +       + +      ++  +   ++    G  ++A
Sbjct: 238 STLKIVLVLIFSFYFSIGKEKYLKSFKKSIPNKYRDDVNYLAVRINTSLQQFIRGRLLLA 297

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
           +  G +      +  V   + +G+IT I  +IP   P      ++          A  + 
Sbjct: 298 LFVGFLTMIYLLILRVDFAIVIGMITCIADIIPYIGPFLGFVPAVLFAFMDAPLKALWVS 357

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   +  +  +  L P L+G    L  L     ++ G    G+ G+ +   L+++I ++ 
Sbjct: 358 ILFILIQWAENNILAPKLIGDSTGLNPLAVLISIIIGGGVFGIWGMVVSVPLVSIILILL 417

Query: 343 KESIMAIKENK 353
               +   ENK
Sbjct: 418 DFFKLKYNENK 428


>gi|254498690|ref|ZP_05111408.1| transporter, permease [Legionella drancourtii LLAP12]
 gi|254352138|gb|EET10955.1| transporter, permease [Legionella drancourtii LLAP12]
          Length = 368

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 97/334 (29%), Gaps = 19/334 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I++II   L        P++ A+ I                        ++ +    +
Sbjct: 16  LIIVWIIGYFLIVGSSILIPIIIAVFIWHLLNTTSGIIQRIPTIGELLPMWLSMILSFAV 75

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             + +          +  ++       ++ + +   +         +           ++
Sbjct: 76  AAIFITIFVNIISNNVSNVIDASGRYQENLLTIVDGIDKKYRIEVLA-----------NM 124

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             L +T      +  I    +      +   L + F+ +   FF R   ++   L     
Sbjct: 125 NQLIKTINVQTIVLKISGVFTTLASSTVLIGLYVAFLFVEQHFFQRKMDAMITSL----- 179

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I   +    ++     T++++G  +         GV       ++   +  
Sbjct: 180 -ENQQLMTNILTHIVNDTQTYLGLKTLLSLGTAIASWFIMKWVGVDFAEFWALLIFFLNY 238

Query: 254 IPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    I       ++ ++   N      + +      FIV   + P  +   + L  L 
Sbjct: 239 IPNIGAIIATLFPATLAVVQFANWLPFIEVIVGLGTVQFIVGNLIEPRFLSHTLNLSPLV 298

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               L       G+LG+F+   +  ++ +I+   
Sbjct: 299 ILISLALWGAIWGILGMFLSVPITVMLMIIFAHF 332


>gi|257866043|ref|ZP_05645696.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257872374|ref|ZP_05652027.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257875678|ref|ZP_05655331.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
 gi|257799977|gb|EEV29029.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257806538|gb|EEV35360.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
 gi|257809844|gb|EEV38664.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
          Length = 347

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 102/338 (30%), Gaps = 18/338 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L    + RW ++F++   L+  +     +L   I  +  + +      K        ++
Sbjct: 7   FLQNLVLRRWTVLFMLAGILFLFRSLMTILLLTFIFTYLIYRLVLLLHRKSHLPIKLTSI 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    ++ +  +         + +  +LV+ V    Q        +  +   +  SE   
Sbjct: 67  LTYSLIVFILYLVATNYVPIIIKQSVQLVNSVADFYQRTDSNNELIEYVLNLLQTSEYIQ 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K  S    +          N  +        F + F     +   +  +  F    G   
Sbjct: 127 KLQSGVLVVINYLY-----NFGELALTVLISFLLSFFFMIDNKKTVAFSRLFLQGRGAWF 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +  L                 +   +      +IA+    +   A  + G P  ++L
Sbjct: 182 FEDVYYL------------GAKFTRAFGNVIETQLVIALVNTAITVFALAVMGFPQLLSL 229

Query: 245 GVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++   +++IP    I     ++      G   +   + L       +    L P L+  
Sbjct: 230 ALMIFFLSLIPVAGVIISCIPLTFIAYSIGGFNDVIYILLIIVFVHALESYILNPRLMAN 289

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             ++P   TF  L       GL GL IG  L      +
Sbjct: 290 KTEIPMFYTFILLYLSEHLFGLWGLIIGIPLFTFFLDL 327


>gi|288917432|ref|ZP_06411798.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
 gi|288351135|gb|EFC85346.1| protein of unknown function UPF0118 [Frankia sp. EUN1f]
          Length = 367

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 102/334 (30%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++      + +  +   +   A    AL++  T  P+ +    ++         +   +
Sbjct: 17  ILLGLASSVVTIAGMRAFRDTLAATFLALVLVVTCHPLQACL-RRRGAPGWVGVAVTMTT 75

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +    ++ L       +  L       ++      R L D+                
Sbjct: 76  IYTIMAGLVVALVAAAARLVTLLPDYAAQFDKLLNQAARRLEDL---------------- 119

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  + T +    +  +                +++F++  +FF   DG   +++LD
Sbjct: 120 -GVTPEQASTTVGRLDLSKLSGLLQNILSGLTSAGSNLMFLVALVFFLAIDGDQFARRLD 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                          R   +  R      ++  +    +   A     +P  +  G+++ 
Sbjct: 179 VAA--ESRPLLVDALRAFTRNTRRYLAVSSLFGLVVAALDVLALHWLAIPLPLLWGLLSF 236

Query: 250 IMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    +        L +  G +     +    +    +V   ++P +VG  ++L 
Sbjct: 237 ITNYIPNIGFLVGLLPPALLGLLEGGVARMLWVVAVYSSINMVVQSFIQPKVVGNVVRLS 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TFF +V     +G LG  +   +  L   + 
Sbjct: 297 ATLTFFSVVFWTFVLGPLGALLAVPMTLLTKALL 330


>gi|257460228|ref|ZP_05625331.1| transport protein [Campylobacter gracilis RM3268]
 gi|257442293|gb|EEV17433.1| transport protein [Campylobacter gracilis RM3268]
          Length = 342

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 106/343 (30%), Gaps = 24/343 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + E++     +M    + IIL  L   +    P L A+ I     P+       +     
Sbjct: 4   LGESLKLQMSLMSVACVVIILAGLKAAQAIVVPFLLAIFITVLVSPLVLYVQKIRVGR-- 61

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              V + + +   F+  ++F        +KE  +++         V   +S         
Sbjct: 62  ---VFSFLIITFAFVAIIVFFGAVIFDAIKEFSARLPELQAKFEEVLGGVS--------- 109

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               K       L   +     +     +     + G I        I +   +F     
Sbjct: 110 ---AKLSRFGIELNAANLGIDPSEAAAQLSALLRKTGSIVSTGFFIFIMVSFMVFESSVI 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I     S              +     ++   L  TI +   G ++G   W  GVP 
Sbjct: 167 DEKIRYFSQS------SRATHTFVKKFASSLKKYLLIKTIASACTGALIGLGLWALGVPY 220

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               G++  ++  IP    I     ++++ L   +I ++        +    +   + P 
Sbjct: 221 AALWGILAFVLNFIPTIGSIVAVFPTLFVTLATMDISSSIWTIAIYLVVNVAIGNIIEPR 280

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +G  + L  +    GL+     +G+ GLF+   L   + +  
Sbjct: 281 FLGQGLGLSTISVLAGLLLWGFVLGIGGLFLAVPLTMSLQIAL 323


>gi|160915325|ref|ZP_02077538.1| hypothetical protein EUBDOL_01334 [Eubacterium dolichum DSM 3991]
 gi|158433124|gb|EDP11413.1| hypothetical protein EUBDOL_01334 [Eubacterium dolichum DSM 3991]
          Length = 364

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/319 (9%), Positives = 92/319 (28%), Gaps = 25/319 (7%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            PVL  +++ F   P+                 +  +    +  + L+ L      ++ E
Sbjct: 46  LPVLLGVVVAFFMQPMIDRVQ--LYLPKRLSVFLVYIVFAVIVSLLLVVLVPIFYKQIIE 103

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            V  + +  +    +                          +     + L+ N +     
Sbjct: 104 CVKMLPIWLERFKNILESYH---------------------IPYDFHSLLERNSLKEGSM 142

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
           F            +      +  FF   D       +  + ++     +        K+I
Sbjct: 143 FVVDTLCSTFSTAMDYGVAYLTGFFISIDVEFWKHCIYKVFKNAHR--FSTFYHTASKII 200

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               LG  +  +   +       L+G P+     ++ A++ + P         + + + +
Sbjct: 201 YQYLLGTFLDLLFITVSTWCILSLSGFPNAFVYALLLALLNLFPYIGASIGLVLIVIVAL 260

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                          +   +    ++P +    + +  + +F  +       G+ G+ + 
Sbjct: 261 LSYEHFPFLPIFLVWLLQQLESNVIQPMIFHKTMDVRPILSFAFIFVSDAFFGIPGVILS 320

Query: 332 PVLMALIAVIWKESIMAIK 350
           P+  A+  + ++  + A +
Sbjct: 321 PIFAAIAQIGFRSYLHAKE 339


>gi|293402100|ref|ZP_06646239.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304492|gb|EFE45742.1| sporulation integral membrane protein YtvI [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 378

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 46/344 (13%), Positives = 110/344 (31%), Gaps = 3/344 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   ++M +  V   ++  +  P +    I F   PI   F+   +    F +++  +
Sbjct: 12  RFLYFSILMLLFYVFFQYIIPYLLPFILGFFIAFMLRPIIRIFVRLTKGHEKFWSIVIIL 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L  + L +         ++++ K+    Q+ +      S     +   +      S
Sbjct: 72  FFYALLGIILSYCGMKIYFWTQDVLIKIPEWYQNTMEPFLQDSFSHVQVVWKDYDGAISS 131

Query: 129 HPQSLKILSETFLK---TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              S+    + FL    T+    I    S        + L+    I + FFF  D  ++S
Sbjct: 132 AITSIWEGLQNFLSGFVTDLSQNILSILSNLLSSVPKFLLTFFIAIFSSFFFTSDYHNLS 191

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                            I         + F+    + +     LG    +  +     + 
Sbjct: 192 NFFFQQFSPETQKIILSIRYFATHTFLNMFIATIKLMLLTFFELGIGLSILDIKKAWLIA 251

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +   +  ++P           I               L   + + ++   + P L+G  +
Sbjct: 252 LGITVFDVLPVLGTGGIMIPWILFSYVQGQHKLAIGLLILYLIITLIRNIVEPKLMGKQL 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            L  L     +  G +  G+ G    P+++ ++  + +E I+ +
Sbjct: 312 GLHPLLMLLCMYAGGKLFGVFGFMCMPMVLLILKNLNEEEIIHL 355


>gi|157737983|ref|YP_001490667.1| hypothetical protein Abu_1751 [Arcobacter butzleri RM4018]
 gi|157699837|gb|ABV67997.1| conserved hypothetical transmembrane protein [Arcobacter butzleri
           RM4018]
          Length = 347

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 107/336 (31%), Gaps = 22/336 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                 +    +I+  +         +  A+ I      + +    K         +++ 
Sbjct: 7   KNYFFYFASFVVIIAGMKMASEIVVILFLAIFISSIFSSVLNLLQRKHFPK-----IVSY 61

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             ++ + I+      Y   + +K+ ++ +         +               L + H 
Sbjct: 62  FLLLLIVIILGFMFAYVINISLKDFLANLPSYEVKLKNLV--------------LNSIHF 107

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +    L I     ++T          +        +    + +II + F   +  S   +
Sbjct: 108 AQSYGLNIDKAKIMETLNFSSFFGLTTNIIGSISTFLSKFLLVIIGVAFILAESKSFQTK 167

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +  +           +    I+  F+  T  +   G ++        V   +  GVI
Sbjct: 168 LKVIFRNNAKKLQH--FNLFSFNIQKYFVVKTFTSFLTGFIVTIMLAFFNVDYPILWGVI 225

Query: 248 TAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +   +P    I       +  L+  +IF+A  + +   +    +   L P L+G  + 
Sbjct: 226 AMLFNFVPVVGSIIASIPAILLALMNLDIFSAIWVIILYMVINISISNILEPKLMGRELG 285

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L  L  FF L+     +G++G+F+   +   + + +
Sbjct: 286 LSPLIIFFSLIFWGYILGIVGMFLAVPITMTLKIAF 321


>gi|302865055|ref|YP_003833692.1| hypothetical protein Micau_0549 [Micromonospora aurantiaca ATCC
           27029]
 gi|302567914|gb|ADL44116.1| protein of unknown function UPF0118 [Micromonospora aurantiaca ATCC
           27029]
          Length = 383

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 1/176 (0%)

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +DG S+ + +         A   +  R   + + +   G  IIA  + + +G A  +  V
Sbjct: 188 KDGRSMWRWVLRRLTGPRRALTAEAGRAGWRTLGAYSRGTMIIAAIDAIGIGLALVVLRV 247

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L +IT +   +P        AV++ + +       A            I    L 
Sbjct: 248 PLALPLALITFLGGFVPIIGATVAGAVAVLVALAANGPTTALLTLAAVIAVQQIEGNLLE 307

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           P ++   ++L        +  G    G+ G F+   + A++  +           +
Sbjct: 308 PLVMRRQVQLHPAVILVVVTAGTLVAGVAGAFVSVPIAAVLWRVLDTVQRHRAAER 363


>gi|257866205|ref|ZP_05645858.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
 gi|257800139|gb|EEV29191.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
          Length = 309

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 102/308 (33%), Gaps = 11/308 (3%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           P ++    + +   +       + ++    + +  +      EM   ++++ +     I 
Sbjct: 2   PFFNWVKRRTK-KKSIALYATLLLIVFAAYLIIQVIGPALAYEMGRFINQIPVIINLVID 60

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
                         S L         S+ I   +      I       +    I     +
Sbjct: 61  NINH----------SYLEELFGPFIDSIDISQASNFALQFITGATNRLTSLISIVSHSAI 110

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            +  + + L + ++DG  +   L +     +    +++     +   +   G  ++    
Sbjct: 111 VLFTIPLLLVYMFKDGEKVPDFLANKTPKKYQGLMRQLCSDFHQAASAYIGGKLLVCSYV 170

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            +     + L G+ + + LG+I  ++ +IP   P    A +    +  +I  A  L +  
Sbjct: 171 AVSSYLIFSLLGLQNALLLGLICGVLDIIPYFGPFIGAAPAFLFALSLDIRTAILLVVGI 230

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            I        + P ++   + +  +   F L+     +G +G+ +   + ++I  +    
Sbjct: 231 TIIQLGESYLVSPLVMNKVLHIHPIIAVFLLLIAGNLLGFVGMIVALPVYSIIMAMSGTL 290

Query: 346 IMAIKENK 353
           +   +E K
Sbjct: 291 LRFFQERK 298


>gi|229190050|ref|ZP_04317057.1| UPF0118 membrane protein [Bacillus cereus ATCC 10876]
 gi|228593439|gb|EEK51251.1| UPF0118 membrane protein [Bacillus cereus ATCC 10876]
          Length = 337

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|223986201|ref|ZP_03636220.1| hypothetical protein HOLDEFILI_03530 [Holdemania filiformis DSM
           12042]
 gi|223961838|gb|EEF66331.1| hypothetical protein HOLDEFILI_03530 [Holdemania filiformis DSM
           12042]
          Length = 355

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 95/327 (29%), Gaps = 31/327 (9%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           V L  +    +P+L + +I F   P                  +     + L ++ +  +
Sbjct: 34  VVLMAVFHALSPLLFSCLIVFLFEPFVEKL----PFPRGISCSLVYFGFLGLLVLGIGMM 89

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               M +  +L+ +     +                                   +    
Sbjct: 90  VPLVMEQGSQLLGEAGRLREQLAA-------------------------TEFFHWAGQLD 124

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                      A       +D         +  +F   D  +  + L          +W 
Sbjct: 125 WHGVFTAGYEAAMSATRSAVDRLSFFGVSFLGAYFIALDMEAFGRILKKRLPSY--QHWL 182

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
              +   +V+     G+ +  +   + +     +  VP+ V   ++ A+  +IP      
Sbjct: 183 LFYKTSSRVVYHYLRGLALDLLFLMITVSVLLLIFSVPNAVFYAIMLALFNLIPYLGATV 242

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V +             L +   +   I    ++P +    + L  + T   L+ G  
Sbjct: 243 GQIVILLAQYFATGQIPWLLGVLLWLIQQIEANWVQPLIFKKVMNLRPVYTLIALLAGGC 302

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
             G++G+ + P+L A++ + ++  + A
Sbjct: 303 FFGMIGIILAPILAAIVQLAYRSYLFA 329


>gi|87198509|ref|YP_495766.1| hypothetical protein Saro_0484 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134190|gb|ABD24932.1| protein of unknown function UPF0118 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 406

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/325 (11%), Positives = 102/325 (31%), Gaps = 16/325 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L      F P ++A+I      P+      +    +   + IA ++++ + ++ LL +
Sbjct: 51  FVLSIGSVVFLPPVTAMIFTIVLSPLADRLT-RMGLPNVLASFIAILALVAVVVMALLLI 109

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                + + ++ +      Q          ++      +    +   H     +++   +
Sbjct: 110 LQPAFVMVDQVPTLAR---QVARRFAELRGNLWWIADVNRQLARITGHSAREVVVASPSV 166

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                   P       +  L     I   I        D  + +  +             
Sbjct: 167 IEQVAFATPSVILETLLTLLMTFFMIEARIRMKRRILLDRHTFNASV----------RLA 216

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ R V + + S  L +  +  G G+++    W  G+ + V  G +  ++  +P   P+ 
Sbjct: 217 RVLRDVQERVASYILTVAQVNFGVGVLVALGAWSFGLAAPVMWGGLAFVLNFLPYLGPLV 276

Query: 262 FTAVSIYLLIKGNIFNATCLF--LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              +   + +      A  L   L       +    + P ++G    +  +     +   
Sbjct: 277 MMGLLGLVGLGTAPTVAVGLLPALAFLGLHAVESNVVTPSILGARFTVNPVAILISISYF 336

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               G+LG  +   ++  ++ +   
Sbjct: 337 SWIWGVLGALLSVPILLTVSALLDH 361


>gi|317492338|ref|ZP_07950767.1| transporter tqsA [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919677|gb|EFV41007.1| transporter tqsA [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 348

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/337 (12%), Positives = 102/337 (30%), Gaps = 22/337 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +    + IIL  +        P L AL +     P+    +  +   S      A 
Sbjct: 11  TRIAIMASALVIILAGVRAASEIIVPFLLALFLAIILNPLVKILMKLRLPRSA-----AV 65

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             V+ + I+ L  +       + +    +             L  I   +  +    +  
Sbjct: 66  GLVLVIIILGLTLMIGMLGASLNDFSRTLPQYRGMLASKLVALQHIAERLNLNFSPVELA 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +H     +++        +           M  +   + +  +   L     +  +    
Sbjct: 126 NHFDPGVVMNMATRIVTQLSGAMSSLFLLLMTVVFMLMEVPHLPYKLRKSLSNADAGMGS 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +    + +                       T I++  G+V+     L G+   +  GV+
Sbjct: 186 IQRALDGVTQ----------------YLALKTGISLITGVVVWLMLHLMGIRFAMMWGVL 229

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++  IP     I+     I  L+  +  +A  +         +    L P ++G  + 
Sbjct: 230 AFVLNYIPNIGSVIAAIPPVIQALLFNSFGDAVMVASGYIAINMVFGNILEPRVMGRGLG 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L  L  F  L+     +G +G+ +   L  ++ ++ +
Sbjct: 290 LSTLVVFLSLIFWGWLLGPIGMLLSVPLTIVVKILLE 326


>gi|218235427|ref|YP_002366643.1| hypothetical protein BCB4264_A1926 [Bacillus cereus B4264]
 gi|218163384|gb|ACK63376.1| putative membrane protein [Bacillus cereus B4264]
          Length = 337

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYALSTINEMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|327386326|gb|AEA57800.1| hypothetical protein LCBD_2305 [Lactobacillus casei BD-II]
          Length = 340

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/327 (14%), Positives = 97/327 (29%), Gaps = 17/327 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F + + L+F +   + +L   I  F    +  +           + V   + V+   + 
Sbjct: 2   LFSVFLLLWFARSIMSDILLTFIFAFLVSRLVHAVQRHVHIRPFVIVVPVYILVILGLVY 61

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             +      + +   L + V             +                    QS K L
Sbjct: 62  AAVHYVPAIIHQTIGLFNSVQNFYNSEAFANNQVMQWVL---------------QSTKSL 106

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           + T     G+  + ++A   G + L   +S I                   LDS     F
Sbjct: 107 NLTEQLKTGVTTVLQYAGNIGAMGLTLFVSFILSFFFTIELDSLPAFGQLFLDSPFGWYF 166

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                  +                IA+   ++         +P+  +L ++  ++++IP 
Sbjct: 167 KDLQ-YFAMKFINTFGVVMEAQIFIAVVNTVITTITLLFLKMPNTPSLAIMVFLLSLIPV 225

Query: 257 GAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              I     ++I     G   +   + +  A    +    L P  +    +LP   TF  
Sbjct: 226 AGAIISLIPLTIIGYTVGGWQDVLTILIMIAAIHVLEAYVLNPKFMSSRTQLPVFFTFVV 285

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+   R  G  GL +G  +      + 
Sbjct: 286 LLVAERLFGTWGLIVGIPIFTFFLDVL 312


>gi|170739126|ref|YP_001767781.1| hypothetical protein M446_0793 [Methylobacterium sp. 4-46]
 gi|168193400|gb|ACA15347.1| protein of unknown function UPF0118 [Methylobacterium sp. 4-46]
          Length = 348

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 107/351 (30%), Gaps = 23/351 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M E+      +     + +   +L+  +  FAP   AL +    WP+ S           
Sbjct: 1   MSESAKPSVAVPAICALILAGAALHLARTVFAPAAFALFVIAVVWPLQSRLER--VVPKA 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
                + ++ + +         +     ++ +V+         + +  WL      +   
Sbjct: 59  LALSASVLATLIVVTAFGSLTAWAFGRTVRYVVNDAPHLQAVYLQLSDWLETHGVVLAGL 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                                    + ++ R          +    +  ++I +     +
Sbjct: 119 FAEHFD-------------------VRWLIRLLPEVASRISNMTAFLFVILIYVILGLSE 159

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              ++++L +L +H                +R   +  T++++  GL++ +      +P 
Sbjct: 160 VDEVARKLHTLDDHGIGRALLAGGAETAAKLRRFVVVRTLMSLTTGLLVCAFAAAMALPL 219

Query: 241 HVALGVITAIMAMIPGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +  GVI   +  IP       +       L    +   A  + +   +  F +   + P
Sbjct: 220 ALEWGVIAFTLNYIPVIGSAAATVLPTVFALAQFVSWEIALVVLVGLNLIQFFIGNFVEP 279

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            + G  + +  +   F +       G+ G FIG  +      I ++   + 
Sbjct: 280 KVAGSSLSISPVIVVFAVFLWTFLWGIAGAFIGVPITIAGLTICEQFPSSR 330


>gi|296283040|ref|ZP_06861038.1| hypothetical protein CbatJ_05440 [Citromicrobium bathyomarinum
           JL354]
          Length = 398

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 88/309 (28%), Gaps = 15/309 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L      F PV +A+++     P+     S     +T  +V+A V  + + ++    +
Sbjct: 53  FVLSIGSVVFLPVTAAVLLTVLLAPLADRLSSW-GVPNTLASVLALVIFVAIVVLAFSAI 111

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                     L   +         +    + +                   L   S    
Sbjct: 112 LQPAFSLFDRLPELIEQIGSRYREMQEEFAWL----------ANANERLADLVGGSGATE 161

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T     + +  +    + L   +    M   +      G      L             
Sbjct: 162 VTLAGPSVFQQVAISAPVLLLEVMLTFLMAFFMVE--ARGRLRRNILFGRTSFGTSVKAA 219

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI- 260
           ++ R V   + +  L +  I +G G+V+    W  G+P+ +  G +  ++  IP   P+ 
Sbjct: 220 RVLREVQDRVAAYILTVAWINLGVGIVVALGAWAMGLPAPIMWGGLATLLNFIPYVGPLA 279

Query: 261 -SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            +   V   L    ++F      +            + P ++G    +  +         
Sbjct: 280 MTGLLVLFGLGTADSVFLGMIPAVAYITLHVFEANAITPAILGRRFTMNPVMILLAFSYF 339

Query: 320 VRTMGLLGL 328
               G +G 
Sbjct: 340 TWIWGAIGA 348


>gi|255323344|ref|ZP_05364478.1| acid membrane antigen A [Campylobacter showae RM3277]
 gi|255299636|gb|EET78919.1| acid membrane antigen A [Campylobacter showae RM3277]
          Length = 346

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/349 (16%), Positives = 119/349 (34%), Gaps = 21/349 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N +       +  + + +Y  K F   +  A ++   +  +   F+   +   T  A +
Sbjct: 1   MNNRVFFGVFALCALALVVYLFKPFLLNIFIAALLAVATSNVNVKFLQLTKGKRTLSAAL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+++  LFI PLL+             +  +    +      +    P      ++   
Sbjct: 61  TTLALFSLFIAPLLYAVIEIAKHAANFNTGYITNTLNYFQSGNFQLPEPIKFLEPKIKEM 120

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                                  +    +  G   +++ + +IF+++  FF    G  + 
Sbjct: 121 IADID-----------VKAISANLIANLAGIGKSSVNFLVDMIFILVFFFFAVLYGSELV 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L S          + I   V  V+      + I AI +G +        G    +   
Sbjct: 170 GYLKSALPMKESE-SEFILSEVANVMSVVLYSIVINAILQGCLFAIITISYGYNGFLMGI 228

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRP------ 298
           +      +   G  +++  +S+Y    GN   A  + ++  I + +V D  L+P      
Sbjct: 229 LFAFTSLVPVVGGLLAWGPISLYEFANGNTAAAIVIAVYTIIVISVVADTFLKPIVIKFI 288

Query: 299 --FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              LV  P K+  L  FF ++ G+ T G  GL +GP ++       K  
Sbjct: 289 NDKLVKIPTKINELLLFFSMIAGISTFGFWGLILGPAIVTFFISTIKLY 337


>gi|298674448|ref|YP_003726198.1| hypothetical protein Metev_0489 [Methanohalobium evestigatum
           Z-7303]
 gi|298287436|gb|ADI73402.1| protein of unknown function UPF0118 [Methanohalobium evestigatum
           Z-7303]
          Length = 361

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 118/344 (34%), Gaps = 19/344 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I    +    L  ++ L+     ++  L+  + S PIY         +    A++AT+
Sbjct: 18  KIIAAIAVALFFLAIIFILRPLADGIILGLVFAYISRPIYLKLNK----NKRVGALVATI 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   I  L       + ++  +V                +          E   + +S
Sbjct: 74  CIVIPIIFILGMGILEIIQQITWIVQNQNEVISSLTGFINNVEIPDFLHTGIEQSIQDIS 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 +     +              +    + + L+++  II  +F   DG ++ Q++
Sbjct: 134 QSIIPILREIGIV-------------SYAKDLVIFLLNLVISIIVCYFLLSDGNTLYQKV 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +    +   ++     + K++   F+G    A+   ++    +++ G    +AL  + 
Sbjct: 181 LDITPSNYQKTFQNYVTELDKILGGIFIGNAYAALFVSIMSAIVFYVFGFSHILALSALI 240

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            I A++P  A          L    +G         +   +     +  +RP+L     K
Sbjct: 241 FIAAVVPLFAGYMVLLPLALLRYFNQGIEAALIFFLVASIVIYLPPELFMRPYLASLKSK 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +  L      +GG    G+ G F  P+L+  +   ++  +  ++
Sbjct: 301 VHPLLIMLAFIGGAFVGGIAGFFAAPILLGALIAAYRVYVSELR 344


>gi|119511129|ref|ZP_01630247.1| hypothetical protein N9414_16956 [Nodularia spumigena CCY9414]
 gi|119464224|gb|EAW45143.1| hypothetical protein N9414_16956 [Nodularia spumigena CCY9414]
          Length = 350

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 118/348 (33%), Gaps = 21/348 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M    LN   ++R++++  +  +    L +        + A I+ F              
Sbjct: 8   MFWEKLNNTKLIRYVLLLALGWAIVQVLAYFSTVIVIFIFAGILAFLLSYPVKWSERFL- 66

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  ++  +  + + +  ++ L +  + + ++L+ +     ++ I +   L +I   
Sbjct: 67  -PHGIAVIVVFLVSLLVLVGLIVTLGFAILSQFQQLLEQAPQFVEYVISLLNTLQNILIK 125

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                 +       ++  +             +        +  + +            F
Sbjct: 126 FNFKVDFQLIEEALRNQILAGIGTGWATFQGLLINLVDLILIAVVAF------------F 173

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              DG  +   L             +++  + +     F G  ++++  G  +   +   
Sbjct: 174 MLLDGKRVWDFLMKFFP---RNVRNQVTLAIQQNFLGFFWGRLLLSLFFGGSIFVVFIFI 230

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            +P  + L  I  +  +IPG        +   + +   I+ +  + +   I   + +  L
Sbjct: 231 QLPYALFLAAIAGVFDLIPGIGATIGITLVALIALPQGIWVSVQVLIGSVILQQVEENLL 290

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            P ++ G I +  +  FF L+ G +  GL+G+F+   +  ++  ++K 
Sbjct: 291 MPRIMQGSINMNPVFMFFALLIGAKVAGLVGVFLSIPIAGVLISMFKI 338


>gi|168183712|ref|ZP_02618376.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Bf]
 gi|182673274|gb|EDT85235.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Bf]
          Length = 351

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 101/326 (30%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I     +  +    +  P + A +         S  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTTSFLIFFKTLSYTLPFVLAFLFALVLKKPASYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LIFFSIIITLLFWGINLLVHEVVDFGRNAQAYLYSHEEEISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D    +
Sbjct: 129 SIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTKDITKYN 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +  +   + +  I     K++    L    +           +++  +   +   
Sbjct: 189 NKISKIMFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +  AI   +P     +       + I         +  L     + I+ + L P L+   
Sbjct: 249 ITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLISYAAVSIIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPISILAAIFIGLKANGISGMFF 334


>gi|153810357|ref|ZP_01963025.1| hypothetical protein RUMOBE_00738 [Ruminococcus obeum ATCC 29174]
 gi|149833536|gb|EDM88617.1| hypothetical protein RUMOBE_00738 [Ruminococcus obeum ATCC 29174]
          Length = 415

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 72/199 (36%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I    S  G++       +      L     D     +       H      K ++++ 
Sbjct: 193 TIILLVSVIGLVIFGVIPQLTQTTGNLMTSIADFIPQMKNWIREFSHDNQEIMKLVNQLQ 252

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
               ++   G++I+  G G ++ +     G  +        A  A+IP        AV +
Sbjct: 253 FNPDQAIKWGISILGSGAGNMMNTTMSALGSIASGLATFFIAFTALIPIFGAFIGCAVGV 312

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
           +L+   +   A    +   +   I    + P +VGG + LP +     +  G   MG++G
Sbjct: 313 FLIFMVSPKQAVLFIIIFLLLQQIEGNLIYPHVVGGSVGLPSIWVLAAVTIGGNLMGIVG 372

Query: 328 LFIGPVLMALIAVIWKESI 346
           + I    +++   I++E +
Sbjct: 373 MLIFIPTVSVFYTIFREYV 391



 Score = 39.6 bits (91), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/252 (7%), Positives = 51/252 (20%), Gaps = 25/252 (9%)

Query: 33  PVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIATVSVMCLFIVPLLF 80
                  I F      S                           +  + ++ +  + +  
Sbjct: 148 AFALGGAIAFVINVPMSFLEKIILGKTKENNKLAKKLARPVSLFLTIILLVSVIGLVIFG 207

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +          L++ +         +  W+ +              L       I     
Sbjct: 208 VIPQLTQTTGNLMTSIADFI---PQMKNWIREFSHDNQEIMKLVNQLQFNPDQAIKWGIS 264

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +  +G   +                +      A       G  I   +      +     
Sbjct: 265 ILGSGAGNMMNTTMSALGSIASGLATFFIAFTA--LIPIFGAFIGCAVGVFLIFMVSPKQ 322

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  I+  +++     +    +  G          G+PS   L  +T    ++     +
Sbjct: 323 AVLFIIIFLLLQQIEGNLIYPHVVGG--------SVGLPSIWVLAAVTIGGNLMGIVGML 374

Query: 261 SFTAVSIYLLIK 272
            F          
Sbjct: 375 IFIPTVSVFYTI 386


>gi|237797091|ref|YP_002864643.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Ba4 str. 657]
 gi|229261548|gb|ACQ52581.1| sporulation integral membrane protein YtvI [Clostridium botulinum
           Ba4 str. 657]
          Length = 351

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 101/326 (30%), Gaps = 3/326 (0%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I+ ++I     +  +    +  P + A +         S  I K +  ++  + I T
Sbjct: 9   DNLILFFIIYTTSFLIFFKTLSYTLPFVLAFLFALVLKKPASYLIKKLKIKNSLASFIVT 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    + I  L +     + E+ +                    D     + +   +   
Sbjct: 69  LIFFSIIITLLFWGINLLVHEVVDFGRNAQAYLYSHEEEISNYVDNIYRYYLNLPPSIID 128

Query: 128 SHPQSLKI--LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           S  +++       + +       I               + I+F +++ +FF +D    +
Sbjct: 129 SIEKTIGNSFSKISNIIVFITGKIVSSFIGLLTSIPYILMLILFTLLSTYFFTKDITKHN 188

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            ++  +  +   + +  I     K++    L    +           +++  +   +   
Sbjct: 189 NKISKIMFNEHSSKFSHIYLESKKMLNGYILSYLTLIGITFFETLIIFFIFNIKYSIMFS 248

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           +  AI   +P     +       + I         +  L     + I+ + L P L+   
Sbjct: 249 ITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLISYAAVSIIRQILEPKLLSSS 308

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + L  +     +  G++  G+ G+F 
Sbjct: 309 LGLHPISILAAIFIGLKANGISGMFF 334


>gi|296102588|ref|YP_003612734.1| putative AI-2 transport protein TqsA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057047|gb|ADF61785.1| putative AI-2 transport protein TqsA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 345

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 111/337 (32%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILTGVRFAADIIVPFILALFIAVILNPLVQRMVRIRIPR-----VLAIT 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + I+ ++ L  Y    + EL   +       +     +          E W +   
Sbjct: 67  LLISIIIIAMVLLVAYLGTSLNELARTLPKYRSSLVIPLLQI----------EPWLQRAG 116

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S++ L +       +  +    ++         L  + ++  L    +    +   +
Sbjct: 117 IEVSVEELLKYIDPNAAMTLVTSLLAQLSNAMTSIFLLFLTVVFMLLEVPQLPAKLQHIM 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I++  G V+        V      G++ 
Sbjct: 177 VR------PVEGMGAIQRALDSVSRYLVLKTAISLVTGCVVWGMLVALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++     + +L+   +++A  L     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPVLQVLVFSGLYDALILLAGYLVINLVFGNILEPRMMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 327


>gi|119484291|ref|ZP_01618908.1| hypothetical protein L8106_01197 [Lyngbya sp. PCC 8106]
 gi|119457765|gb|EAW38888.1| hypothetical protein L8106_01197 [Lyngbya sp. PCC 8106]
          Length = 374

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 116/334 (34%), Gaps = 13/334 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  +   + + +  ++    + +++A +I F      +             A +  + 
Sbjct: 12  WVLVLVASGLTISAFEYIGELISILVTAGLIAFILNYAVAKLQRL--IPRGLAAALVYLV 69

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + IV  + +    +++ ++L++++    + G                     + L  
Sbjct: 70  AALVVIVIAVTVVPPVIMQGRQLITRLPDLIESGKQQLAEFQAWGL--------ERSLPI 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +             + I   +    +   ++ +  I +++  F+   DG  +   + 
Sbjct: 122 DVGILQQKLLVNLQGKAEAIAATSLGLVVGTFNWFIDFILILVIAFYMLLDGERLWDGIT 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S         +        + ++   +G  I+ +   + L  +++L  VP  +   V   
Sbjct: 182 SFLSPKVRYIFTDCL---ARNLQGFVVGQFILGLFMAVSLTISFFLLKVPFFLLFAVFIG 238

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+ +IP             ++   + + A  + L   I   I D  + P ++G    L  
Sbjct: 239 ILEVIPFVGATLGIGTVTIIVAFIDWWLALQVLLVAIIFQQIKDNLVTPRIMGNITGLSP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  F  L+ G R  GLLG+ +   L  ++  I++
Sbjct: 299 VIIFSSLLLGGRIGGLLGIILAIPLTGVVKSIFE 332


>gi|300769592|ref|ZP_07079478.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300493007|gb|EFK28189.1| permease [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 358

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 105/317 (33%), Gaps = 17/317 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 39  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 98

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A  +   + + +               + +   S  I +   L   GI
Sbjct: 99  DQLKVIPDMLAKAITNHPVLNKNIDKWV-----------NQAIHSSELIQNGKALLVTGI 147

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 148 KGLSEVGTGFTHVLMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 202

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              ++        +I     +++   + + G+PS + L +I  I+ ++P    +      
Sbjct: 203 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 262

Query: 267 IYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L    G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 263 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 322

Query: 326 LGLFIGPVLMALIAVIW 342
            GL IG  +++    I 
Sbjct: 323 WGLIIGIPIVSFFLDIL 339


>gi|322372071|ref|ZP_08046613.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320548493|gb|EFW90165.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 408

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 49/335 (14%), Positives = 107/335 (31%), Gaps = 27/335 (8%)

Query: 7   NPQGIMRWMIMFIILVSL-YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           N + +  W+I  ++ + + + L  +   ++  L + + + PIY     +  +  +  A +
Sbjct: 8   NRERVAWWLIFGVLGLIIAFILYSYVGTIVLGLFVYYATRPIYRRLSHRI-QPRSLAAGL 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A   +    I+ + +  + G+ ++ EL                 L      +   +    
Sbjct: 67  ALGVLAFPGILLIAYTVFVGIQQLSELAGI------DLRQYESSLGPYLQTILGQQNPQD 120

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            ++   S       +L       +   A  +        + +   +I  F+  RD   ++
Sbjct: 121 AINQILSNPQQLTQYLNPQTASGVVTSAGGYLGAAASGLIHVFIALIIAFYLLRDDQKLA 180

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--------G 237
               S       A        V   + + + G  + A    +V    Y           G
Sbjct: 181 GWFSSQISGENSATHA-YLTEVDTDLETIYFGNILNAFVVAIVAAITYTALDSIAPPEVG 239

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIEL 289
           +P+ V LG++T + ++IP              L   +         F    L +   I  
Sbjct: 240 IPAAVLLGLLTGLGSLIPVVGMKIVYVPIGLYLAGRSLVTAPQSIWFPIVFLLVAAVIVD 299

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
            + +  LRP++ G    L      F  + G    G
Sbjct: 300 GVTELLLRPYISGR--NLHVGLVLFAYILGPLLFG 332


>gi|256828453|ref|YP_003157181.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
 gi|256577629|gb|ACU88765.1| protein of unknown function UPF0118 [Desulfomicrobium baculatum DSM
           4028]
          Length = 390

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 108/349 (30%), Gaps = 20/349 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++R ++   +   ++ L+ FF  +    + G+      +        +     V+    
Sbjct: 19  ALIRILVWGGVFAVVFILRSFFLLLFLTFVFGYIQNRGVNRLQE-LIPNRPLRVVLVASI 77

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + + I   +FL      +    V+++    +        L +    +  +       + 
Sbjct: 78  FLGVLITVGVFLVPRAKDQTVLFVTQLPQYVERLDQELGALGERYPMIANAIPELGAFAD 137

Query: 130 P--------------QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                          Q +  + +     + ++ +       G        + +  ++  F
Sbjct: 138 HSAPGNGKSRVAALVQQIFSMGDPPDGQHKVNQLLDLVRGVGGRIAAIASAFLLALLFSF 197

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
               D   +S  + SL        ++++    R    V+        +IA+    +    
Sbjct: 198 LIVLDLPRLSASVCSLENSKLGFVYREVAGSIRDFATVLGKALEAQFVIALVNAALTAIG 257

Query: 233 YWLAGVPSHVAL-GVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             L G+ S +A   VI  + + IP     IS   + +  L    +       +   +   
Sbjct: 258 VSLLGLGSSMAFLTVIVFLCSFIPVLGVFISSVPICLIALQDSGLTTMILGIVMITVIHL 317

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           +    L P + G  +++  +     L  G +   + GL +G  +   I 
Sbjct: 318 LEGYVLNPRIYGSYMRINPVIVLVILTVGAKLFHIWGLVLGVPICTYIF 366


>gi|219853173|ref|YP_002467605.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
 gi|219547432|gb|ACL17882.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
          Length = 363

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/359 (17%), Positives = 122/359 (33%), Gaps = 19/359 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++  L  Q ++  +I  I +++          VL AL I   S P++  F      S + 
Sbjct: 19  QQRDLIEQWLIVLVIAGIGVLTTVAFFPLLGIVLFALSIAMVSMPLHRRFQRFMRPSISA 78

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V   V ++                +  +LV +                      WA  
Sbjct: 79  MLVTVCVGLVLTVCTVATVAVLVENSDFIQLVVQ------------------TVLNWAVS 120

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +S    +     T    + I         +     D  + I+   +AL+ F   G
Sbjct: 121 SQGGSISLGIPIDAAQITSGVNDLIAQFTTSLKSWIEQIPDLLMDIVIFFLALYLFLEQG 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +  ++             + S +    + S ++    IA+    +    + + G    
Sbjct: 181 ERLWLEILKNIPARSRRVASRFSEMAVDTMYSVYVVHLAIAVVTFFLSIPFFMVLGYGHV 240

Query: 242 VALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +   V+  +  ++P     +    V  Y L  G++     +   G     + D  +RP L
Sbjct: 241 LFFAVLCGVFQLVPFLGQTVILLFVGGYALALGDVRGILLVIFIGYPIAAVPDVVMRPLL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +G  +++     F G  GG+  MG +G  +GP+LMAL+   +K +I      +E    N
Sbjct: 301 MGQKMQVHPAILFIGFFGGIAVMGAIGFVLGPLLMALLVAAYKIAIEEFGAGREGDKDN 359


>gi|284990636|ref|YP_003409190.1| hypothetical protein Gobs_2135 [Geodermatophilus obscurus DSM
           43160]
 gi|284063881|gb|ADB74819.1| protein of unknown function UPF0118 [Geodermatophilus obscurus DSM
           43160]
          Length = 443

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 89/303 (29%), Gaps = 21/303 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +     PVL AL++     P+               A +  + V  + +  +  L     
Sbjct: 92  IAWLVGPVLLALVVVIALTPVQRFLQRH-GWPRWASATVLLLLVWTVLLGFVALLVVSIA 150

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                L +    A      V   L+D                    L  L   F  +  +
Sbjct: 151 QFAALLPNYAGEAEALIASVVADLNDRGIVS-------------GQLSDLLAQFDYSQLV 197

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                  SR         L +  ++         G  ++             +      +
Sbjct: 198 GVATGVLSRATDAASTLVLLLAALVFLSIESGGFGRRLA------LIAADRPHLPIALGL 251

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
             +  RS     T+      +  G A  + G+P  V  G+++ +   +P    +      
Sbjct: 252 FARGTRSYLWVSTVFGGIVAVGDGIALAIIGIPLPVVWGLLSFVTNYVPNIGFVLGLVPP 311

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +I  L+ G   +   +    A+  F+V   ++P  VG  + L    TF  L+     +G 
Sbjct: 312 AILALLDGGWTDFWVVIAVYALLNFVVQTLIQPRFVGDSVGLSMTVTFVALLFWGWVLGA 371

Query: 326 LGL 328
           LG 
Sbjct: 372 LGA 374


>gi|328544580|ref|YP_004304689.1| Permease, PerM family [Polymorphum gilvum SL003B-26A1]
 gi|326414322|gb|ADZ71385.1| Permease, PerM family [Polymorphum gilvum SL003B-26A1]
          Length = 340

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 95/337 (28%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + I++  L     +  P+L A  +     P +          +     +   
Sbjct: 3   RILIVAACIVIVIAGLRAAVFWTVPLLLATFLAILLAPAFLRL-RDFGLPTWLALTVTVA 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +       +  L          L             + + + D    +    L      
Sbjct: 62  GLALAGAAIVALLQASLTDFAARLPDYQQTLRVQIADLMQSIEDNGFVLPEELLAPFTDR 121

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                                     +              ++I   F   +   ++++L
Sbjct: 122 ------------------QTAMSLLGQIARTLSGLLTQAFMVLIFTAFMLAEAAGLNRKL 163

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           D L         +   R   + +R      T++++  G ++    WL GV + + +G++ 
Sbjct: 164 DLL--PEVSQESRLALRRNLQKVRRYLALKTVMSLLTGALVVVMLWLMGVENALFMGLLA 221

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP           + L         A    +   +    V   + P ++G  + L
Sbjct: 222 FLLNYIPNVGSFLAAIPGVLLAFIQFGPGMALVAAIGYFVLNTAVSNGIEPRVLGDNLGL 281

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L     LV     +G +G+ +   +  ++  + + 
Sbjct: 282 SPLAIIVSLVVWGWVLGPIGMLLAVPITMMLKAVLEA 318


>gi|307721500|ref|YP_003892640.1| hypothetical protein Saut_1581 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979593|gb|ADN09628.1| protein of unknown function UPF0118 [Sulfurimonas autotrophica DSM
           16294]
          Length = 341

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/329 (12%), Positives = 110/329 (33%), Gaps = 23/329 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + I+L  +        P L +L I     P+Y+ F      S     +++   V+ +FI+
Sbjct: 16  VVIVLAGIKSASVIIIPFLLSLFIAIILSPLYNYF-----NSKGIADILSVTLVITVFIL 70

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L F+       + +  + +    Q      + +S     +  +       +     + +
Sbjct: 71  FLAFVAKLIGTSVHDFSANIDTYAQKLSGYYQLISTYAASLGIAISTDDISNLINMKQAM 130

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                    +  +        +  +   L   + +  + F      +I+           
Sbjct: 131 KFATSIIQSMGSMFTNGFIIILTVVFMLLESQYFVKKVEFADGHQETIAH---------- 180

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                     +   I++  +   +I++  G+++  +    G       G++  ++  IP 
Sbjct: 181 -------IETIFSKIKNYMVLKALISLLTGVIVWLSLSFIGTDYAFLWGILAFMLNFIPN 233

Query: 257 GAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              I       +  L++    +A  + L   +   ++   + P ++G  + L  L  F  
Sbjct: 234 IGSIIAAIPAVLITLVQLGAMSALLVTLLYTVINVVIGSIVEPKVMGKGLGLSTLIIFLS 293

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L+     +G++G+ +   L  +  +I+  
Sbjct: 294 LLFWGWLLGIVGMLLSIPLTIMAKIIFDA 322


>gi|284929683|ref|YP_003422205.1| putative permease [cyanobacterium UCYN-A]
 gi|284810127|gb|ADB95824.1| predicted permease [cyanobacterium UCYN-A]
          Length = 346

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/312 (10%), Positives = 92/312 (29%), Gaps = 10/312 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +    + I    L+ +K     + +A+I       +      K +       ++  +++ 
Sbjct: 7   IGLFSLVISCYVLWEIKHILLLIFTAVIFATAINRLVKLLE-KIKIPRILGILVIILTIT 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I+    +    + + ++L+S +    +        L +  G +              
Sbjct: 66  IATILFSWLIVPPFLDQFQKLLSLLPNIGEKLRGYLILLLENQGYLSLMPSPPSLDDLFS 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L               I           L   L ++F+ I       +          L
Sbjct: 126 QL---------QPLFTDIFSNFFIIFSNSLTIILQLVFIFILTIMMILNPHRYRHIFLKL 176

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I  +    + +  +G+ +  +  G + G   W   +   +   ++  ++
Sbjct: 177 FPSFYRQRGDEILTLSENALGNWLIGIVVNCLFIGTLSGLGLWFLQIRLVLVHALLAGLL 236

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P++     + + +    +    + LW  +   +    L P ++   + L  + 
Sbjct: 237 NFIPNIGPVTSVIFPLMVALLDEPWKIGAIILWYIVIQNVESYWLTPLVMAKQVSLLPVV 296

Query: 312 TFFGLVGGVRTM 323
           T    +   +  
Sbjct: 297 TLIVQIFFAQFF 308


>gi|116072044|ref|ZP_01469312.1| hypothetical protein BL107_07829 [Synechococcus sp. BL107]
 gi|116065667|gb|EAU71425.1| hypothetical protein BL107_07829 [Synechococcus sp. BL107]
          Length = 363

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 90/304 (29%), Gaps = 13/304 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++   L     F    ++A +I F         + +          +  +    L   
Sbjct: 21  VFVLKRVLVQFAPFPGLFITAALIAFLLDIPCRWLMGR-GLPRLPAITVVVLLTAGLLAF 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ L    ++++ +L+S                            +    S   S    
Sbjct: 80  AVVELLPLLIVQLSQLISAAPSLLTAAEQGINQGQAWAIAHGLPADFADLSSDLVSQI-- 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +     + +         +   ++ + +++   F      SI+  L       +
Sbjct: 138 ------SRVATQLSQRLLSILGATVGTSINTVIVLVLAVFLLLGSDSITAGLAQWLPARW 191

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 ++  + +  R  F G  ++A+         + +  +P  V   V+     +IP 
Sbjct: 192 REL---VTTTLGRTFRGYFAGQVVLALILSGGQLLVFTVLEIPYGVLFAVLIGFSTLIPY 248

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            + ++   VS   L   +      L         IVD+ ++P L+G  + L        L
Sbjct: 249 ASALTIVFVSAI-LGVQDPRTGLELLAAAIAVGQIVDQVIQPRLMGSIVGLQPAWLLIAL 307

Query: 317 VGGV 320
             G 
Sbjct: 308 PVGA 311


>gi|318040640|ref|ZP_07972596.1| hypothetical protein SCB01_02995 [Synechococcus sp. CB0101]
          Length = 358

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 105/331 (31%), Gaps = 19/331 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  ++A +I F           +         ++     + L ++  L+L    +
Sbjct: 34  LAPFPALFVAAALIAFLLDLPTRWLADR-GLPRWLAVLLVVGLGLGLLVLSALWLVPRLV 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ EL++ +      G      L +   G      +T   S   +          +   
Sbjct: 93  EQLGELINALPSWLAEGEIWLDRLEEWASGRGLPTDFTDLSSTLFA--------RASQLA 144

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +         +   ++ + +++   F    G  I   L              ++  
Sbjct: 145 SQLSQRVLGILGATVGITVNTVIVVVLAVFLLLGGERIVAGLARWLPESVREL---VTTT 201

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+   ++    + L G+P  V   V      ++P  + ++   + 
Sbjct: 202 LNRTFRGYFAGQVLLALILSVLQIVVFTLLGIPYGVLFAVAIGFTTLVPYASALT-IVLV 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG-- 324
             LL   N      +         +VD+ ++P L+G  + L        L  G R     
Sbjct: 261 SVLLALDNPRTGLEVLAAAISVGQVVDQVIQPRLMGSIVGLQPAWLLVSLPVGARIGSLM 320

Query: 325 ----LLGLFIGPVLMALIAVIWKESIMAIKE 351
               LLGL +   + + I   +        E
Sbjct: 321 GFGDLLGLLLAVPVASCIKTFFDAWRPQQPE 351


>gi|291520696|emb|CBK75917.1| Predicted permease [Butyrivibrio fibrisolvens 16/4]
          Length = 259

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 85/209 (40%), Gaps = 3/209 (1%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV-- 207
                                ++   +F  +   +        + +F   ++K+S I+  
Sbjct: 51  MNTIMSTTADVGVAFAQFFIALLLSIYFLAEKDKLKSGGSRFLKAVFKDQYEKVSYIIKQ 110

Query: 208 -PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             K++    +   I A+  G++      + G+P    + V+ A+  +IP   P     + 
Sbjct: 111 SDKILNCYIVYNLIDALVVGIINAIFMGIVGLPYAGLVSVVVAVFNIIPTFGPAIGAVIG 170

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            +LL+    + A    ++ AI   +    ++P L G  + +  L    G+V G + +G++
Sbjct: 171 GFLLLLVEPWYAAAFLIFTAILQTLDGYVIKPKLFGDSLGVSGLWILIGIVTGGKMLGVV 230

Query: 327 GLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G+ +    +A++ +I+ + ++   E K++
Sbjct: 231 GILLAIPTVAILDMIYHKYLLPFLEQKDE 259


>gi|157165001|ref|YP_001466916.1| hypothetical protein CCC13826_0123 [Campylobacter concisus 13826]
 gi|112800273|gb|EAT97617.1| transport protein [Campylobacter concisus 13826]
          Length = 338

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 96/341 (28%), Gaps = 21/341 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     I+      ++   L        P L A+ I   + P  ++    K        V
Sbjct: 1   MRTGNAIIYLASFVVVAAGLKTASVVVLPFLMAVFIAIVATPAINALEKLKFPR-----V 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A   +  +  + L F+    +  +  LVS +         +      +       +  +
Sbjct: 56  LAFALITAVVFLSLGFIANTVIKTINGLVSYMPELQSKFKALADHYHQMLASRGLIDPES 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +             + I      F     +      F+ + + F   +    
Sbjct: 116 IAAPADFDI-------------NKIFAVLGGFLRSGTELVSKSFFVFLLVTFMLFEVQVF 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           SQ+++            +I       ++      +  +   G+ +       GVP     
Sbjct: 163 SQKVEYFASKN--PQTNQIVDTFISNLKRYLAIKSAASFATGVFIFIGLNFIGVPYAPLW 220

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  ++  IP    I     ++ + +  N                 ++   + P  +G 
Sbjct: 221 GILAFVLNFIPTIGSIIAAVPALLVALLLNDAASCAWTAALYLAVNTVIGNFIEPKFLGK 280

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + +  L     L+      G+ G+F+   L   + +    
Sbjct: 281 GLGISTLVVLLSLLFWGFLFGIGGMFLAVPLTMSLKIALDA 321


>gi|228907670|ref|ZP_04071527.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 200]
 gi|228852162|gb|EEM96959.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 200]
          Length = 337

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|69246510|ref|ZP_00603973.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257878313|ref|ZP_05657966.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257889486|ref|ZP_05669139.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257892572|ref|ZP_05672225.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260559863|ref|ZP_05832042.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|314938633|ref|ZP_07845913.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|314944077|ref|ZP_07850740.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|314950315|ref|ZP_07853596.1| conserved hypothetical protein [Enterococcus faecium TX0082]
 gi|314951087|ref|ZP_07854149.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|314992327|ref|ZP_07857761.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|314996889|ref|ZP_07861893.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|68195240|gb|EAN09694.1| Protein of unknown function UPF0118 [Enterococcus faecium DO]
 gi|257812541|gb|EEV41299.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
 gi|257825846|gb|EEV52472.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
 gi|257828951|gb|EEV55558.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
 gi|260074087|gb|EEW62410.1| conserved hypothetical protein [Enterococcus faecium C68]
 gi|313588996|gb|EFR67841.1| conserved hypothetical protein [Enterococcus faecium TX0133a01]
 gi|313593143|gb|EFR71988.1| conserved hypothetical protein [Enterococcus faecium TX0133B]
 gi|313596721|gb|EFR75566.1| conserved hypothetical protein [Enterococcus faecium TX0133A]
 gi|313597304|gb|EFR76149.1| conserved hypothetical protein [Enterococcus faecium TX0133C]
 gi|313642021|gb|EFS06601.1| conserved hypothetical protein [Enterococcus faecium TX0133a04]
 gi|313643332|gb|EFS07912.1| conserved hypothetical protein [Enterococcus faecium TX0082]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 107/342 (31%), Gaps = 17/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 19  QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 79  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDADPVLQYIHTYIERND 138

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +       +   +     F     
Sbjct: 139 FFEQLQNGASIALGYLQDIGKMAVAFAMSFILSFFFMIEKKKTIVFSRLFLKSEFSWFFQ 198

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I    D                              +IA+   L+   A  + G    +
Sbjct: 199 DIYYFADKFV----------------NTFGLVLEAQFVIALLNTLLTTIALAVFGFHQLL 242

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I+++IP    I     +S     +G I +   + +   I   I    L P L+
Sbjct: 243 SLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNPKLM 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +LP   TF  L+   R  G+ GL +G  +      + K
Sbjct: 303 SSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLK 344


>gi|296269009|ref|YP_003651641.1| hypothetical protein Tbis_1025 [Thermobispora bispora DSM 43833]
 gi|296091796|gb|ADG87748.1| protein of unknown function UPF0118 [Thermobispora bispora DSM
           43833]
          Length = 406

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 98/325 (30%), Gaps = 21/325 (6%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           I L  ++ +     P++ AL +     P+      +K         +     + + ++ L
Sbjct: 22  ITLAGIHAVSSIIGPIVLALTLVIAVSPLREWLARRKAP-----VWMQIAIPLVVVLLVL 76

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           L +     L   +L             +   L                 +          
Sbjct: 77  LSMIAILSLAAAQLAILAPTYADQVTAMLTDLQRW-------------AAERGYGSEQLN 123

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L +     I   A       +    S+  +++ L     D    S+ + ++       
Sbjct: 124 KVLSSLDPGKIIELAQSVLSSLVGVLSSLFLIVVLLLAMCLDAPMFSRVIAAIAPE--RP 181

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              +         R   +  TI  +   ++  +A ++ GVP  +  GV+  I   IP   
Sbjct: 182 ALAQALTSFTDKTRRYLIVSTIFGLICAILDVAALYVLGVPLPLLWGVLALITNYIPNIG 241

Query: 259 PISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
            I   A    L +  G       + +   +   +V   ++P  +G  + L    TF  L+
Sbjct: 242 FILGLAPPALLGLLEGGPRTMLLVIVAYVVINVVVQSFIQPKFLGDAVGLSTTATFVSLI 301

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIW 342
                +G LG  +   L  L+  + 
Sbjct: 302 MWTWVLGPLGALLAIPLSLLVRALL 326


>gi|218441749|ref|YP_002380078.1| hypothetical protein PCC7424_4853 [Cyanothece sp. PCC 7424]
 gi|218174477|gb|ACK73210.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 94/335 (28%), Gaps = 22/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             II+  +            A +I   + P+      K+         +A +  +   + 
Sbjct: 20  FVIIVAGIKSAASILNSFFLASLIAIATVPLLQWLTRKRLPG-----WLALLITILGVVG 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             L L  +  + + +L+  +             L ++                  S  + 
Sbjct: 75  AGLTLIAFLGISISQLLQLLPTYEVKIQDFKDVLKEMLAARGI----------KASQVLS 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            + F  +  I  I +F         +  L +  +   L         + Q L        
Sbjct: 125 LDIFSPSRLIGSIAQFLLAVIQALSNSLLLVFLVAFMLIEASGFSNKLHQNLID------ 178

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                       + IRS  +  T       +         GV      GV+  ++  IP 
Sbjct: 179 NNRVFNQFNAFSRDIRSYIIITTWTGAITAVADFLILAFFGVDLAALWGVLFFLLNFIPA 238

Query: 257 GAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              +        L  +K     A  +  +  +   IVDK ++P  +   + L  L     
Sbjct: 239 VGFLLAIIPPFLLGFLKLGTHQAFLIVFFCWLVDNIVDKGIKPRYMQQGLDLSPLIIILS 298

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++     +G  G  +   L  +I  +  ES    +
Sbjct: 299 VIFWSWVLGPTGAILAVPLTLMIKKVILESSEEGR 333


>gi|257880906|ref|ZP_05660559.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
 gi|257816564|gb|EEV43892.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
          Length = 359

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 107/342 (31%), Gaps = 17/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 19  QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 78

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 79  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVINFYEHQPKDADPVLQYIHTYIERND 138

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +       +   +     F     
Sbjct: 139 FFEQLQNGASIALGYLQDIGKMAVAFAMSFILSFFFMIEKKKTIVFSRLFLKSEFSWFFQ 198

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I    D                              ++A+   L+   A  + G    +
Sbjct: 199 DIYYFADKFV----------------NTFGLVLEAQFVVALLNTLLTTIALAVFGFHQLL 242

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I+++IP    I     +S     +G I +   + +   I   I    L P L+
Sbjct: 243 SLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNPKLM 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +LP   TF  L+   R  G+ GL +G  +      + K
Sbjct: 303 SSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLK 344


>gi|239831649|ref|ZP_04679978.1| Hypothetical protein OINT_1000858 [Ochrobactrum intermedium LMG
           3301]
 gi|239823916|gb|EEQ95484.1| Hypothetical protein OINT_1000858 [Ochrobactrum intermedium LMG
           3301]
          Length = 340

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/335 (16%), Positives = 104/335 (31%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
              +  +   +++  L++    FAPV+ AL I    WPI  +              I  +
Sbjct: 6   NAALILIAGCVLIAMLHYGSAVFAPVVFALFIIMLVWPIQRALS--LIMPRYVALAITFL 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+CL +     + +      + +V   V        +  WL                  
Sbjct: 64  LVVCLLLGFGWLIAWTVGQVGRRIVIDAVRYQLLYEQLRTWLDGHGIAASVL-------- 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                        +   + +  R     G    +     I  ++ +     +      ++
Sbjct: 116 -----------LSENFSVSWTLRTLQTIGSRLNNTFSFWIVALVYVLLGLAETEEFGARI 164

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L +      + + SR     IR   +   +++I  G  +    WL G+P     G + 
Sbjct: 165 RQLKDQAAATAFLRASRSAAAKIRFYMVLRALMSIATGSFVWLLTWLVGLPFAETWGFVA 224

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            I+  IP   P+  T +          N   A  +F+   I   ++   + P L G  I 
Sbjct: 225 FILNFIPFLGPLVATLLITAFAFTHFANWQMALMVFIGLNIVQSVIGSVIEPRLTGKTIS 284

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L    T F +       G+ G FIG  +  +    
Sbjct: 285 LSPFATLFSVFAWGSLWGVFGAFIGVPITIVALTF 319


>gi|186680650|ref|YP_001863846.1| hypothetical protein Npun_F0102 [Nostoc punctiforme PCC 73102]
 gi|186463102|gb|ACC78903.1| protein of unknown function UPF0118 [Nostoc punctiforme PCC 73102]
          Length = 345

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/343 (13%), Positives = 118/343 (34%), Gaps = 21/343 (6%)

Query: 6   LNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           LN   ++R++++     +    L + +        A I+ F           ++      
Sbjct: 13  LNNLALVRFLLLVASGWAIVQLLAYFEAVIVIFTFAAILAFLLSYPVYGL--RRFLPHGV 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +  +  + +    ++ +    + + ++L+  +       +P+   L           
Sbjct: 71  AVGVVFLLSIVIIGGLIITVGLTVLSQGQQLIDSITAFLNSLVPLLEGLEGFLRTRNLQI 130

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
             +      ++  + +               +      F+   ++ I + +  FF   DG
Sbjct: 131 DLSFIEEQLRNQAVST------------LVTSLAILQGFMTNFVTFILIAVVAFFMLLDG 178

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +        +  I   + +     F G  +++          + +  VP  
Sbjct: 179 DKLWNFILKIVPKQRRNRFTNI---IRRSFLGFFRGQLLLSGFLTSSTFLVFLVLKVPFA 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + L +I  I+ +IPG       +     ++   ++ A  + +   I   I D  + P ++
Sbjct: 236 LILSIIIGIVDIIPGIGATLGVSTVTLFVLSQGVWLALKVLIACIILQQIQDNLIAPRIM 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            G + L  +  FF L+ G R  GLLG+FI   +  +I  +++ 
Sbjct: 296 QGALNLNPVVIFFALLVGARVAGLLGVFISIPIAGVIVSLFEI 338


>gi|89895286|ref|YP_518773.1| hypothetical protein DSY2540 [Desulfitobacterium hafniense Y51]
 gi|89334734|dbj|BAE84329.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 370

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/300 (14%), Positives = 92/300 (30%), Gaps = 4/300 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    +  L     P + A  I     P+   F+   + S    AV+A V  +      +
Sbjct: 44  VFGQVMSQLLAALLPFIIAFFIALLLEPLVLRFMQGLKTSRPIAAVLALVLAILGIGSIV 103

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +      E+ +L +               L  +   +  +      +++     I S 
Sbjct: 104 FLIVVRLYTELSDLGNSFPSYGYLVGFFNNILGTVDNFIQLNPQIQISINNATQGLIDSL 163

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                 G   +  F S          + ++  ++A FF       +     +L    +  
Sbjct: 164 QGWALTGSKVLLNFISAL----PGVFIVLVVSVVATFFMSASYPGVKNFFSNLVPRKWKP 219

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             + +SR +   +        I+    G++L       G P    +G I+A++ ++P   
Sbjct: 220 GARSVSRALGAAVVGFVRAEAILISVTGIILTVGLLWMGNPYAFTIGFISALLDLLPIVG 279

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                   I  L      +     L   +   ++ + L P ++   I +  L T   +  
Sbjct: 280 TGMIFVPWIVGLFILGSVSEGIKLLIIYLIATVIRQILEPKVMSQNIGIHPLATIISMYV 339


>gi|319652964|ref|ZP_08007069.1| membrane protein [Bacillus sp. 2_A_57_CT2]
 gi|317395313|gb|EFV76046.1| membrane protein [Bacillus sp. 2_A_57_CT2]
          Length = 337

 Score = 91.6 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 107/342 (31%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++ LN   I R++I  II+++LY L+     +L   I  F    +    +S+ + +    
Sbjct: 5   KSFLNNNSIKRFIIFGIIVLALYLLRSMINLILITFIFSFLMDRLVKLVLSRFKLNRKLT 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   + ++ L  + ++      + E+ +L  +V           +   +I        L
Sbjct: 65  VITLYMGIIGLLSIGIIKYLPLIVSEISQLFKQVESFYT------QKHDNIVITYIVQML 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T  ++              ++      +      +           +   L F +    
Sbjct: 119 ETNEITKYLEQGFAFLLQYFSDISHIAVQVLLSLILSLFFLLEKPKLIEFTLKFKHSKIA 178

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               ++            +       +          +IA    ++   A W+   P  +
Sbjct: 179 DFYNEI------------EYFGSKFVQTFGKVIEAQFVIATVNCILTTLALWIMDFPQLM 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP    I     +       G       + L   +   I    L P L+
Sbjct: 227 GLSILIFLLGLIPVAGVIISLVPLCTIAYSLGGFIQVFYIVLVIMVIHAIEAYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  + +
Sbjct: 287 SSKTDLPVFYTFIVLIFSEHFFGVWGLIVGIPVFVFMLDVLE 328


>gi|315125653|ref|YP_004067656.1| hypothetical protein PSM_A0553 [Pseudoalteromonas sp. SM9913]
 gi|315014167|gb|ADT67505.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 349

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 100/331 (30%), Gaps = 15/331 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I    +   + + L+ L      +   ++ G     + S            L ++ T +
Sbjct: 14  TIGITALAIGLFMLLWQLSYVLLLIFGGILFGVFLIGLASLLQRWLPLPRWGLVMLVTAT 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L I+    +    M ++ +L  ++    +      +                K    
Sbjct: 74  VLGLLILAGYLVGPAIMDQLLQLREQITGGVKQLEGYLK---------------GKEWGE 118

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                   +          +    S            I  ++   F+         + L 
Sbjct: 119 ALLQWAQGQWQQAPLSPRKLMGEVSGVFSTLFGSLADIFVILFIGFYLALHPEPYKKGLL 178

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L          ++   V   ++   +G     I  GL+     WL  +   +AL ++  
Sbjct: 179 FLFPSDKRRRINEVMHSVYYALKLWLMGRATSMIVVGLLTALGLWLIDMKLIMALALLAG 238

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++ +P   PI+    ++ + +  +   A  + +   +   +    + PF+    + LP 
Sbjct: 239 LLSFVPFIGPIAALIPAVLVALLNSPTQAAYVLVVYGVVQVLESNVITPFVQRTAVALPP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                G +      G+ GL +   L+  I V
Sbjct: 299 AVMLGGQLLMGAMFGIHGLALSTPLLVSIIV 329


>gi|297588299|ref|ZP_06946942.1| ABC superfamily ATP binding cassette transporter permease subunit
           [Finegoldia magna ATCC 53516]
 gi|297573672|gb|EFH92393.1| ABC superfamily ATP binding cassette transporter permease subunit
           [Finegoldia magna ATCC 53516]
          Length = 395

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 107/326 (32%), Gaps = 6/326 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            +      +L  +++ +   P+     +K     +   +I  V V+ L I+  + +    
Sbjct: 70  IIYHTINTLLIGIVLSYIINPLVKYIENK-GVKRSIAILIIYVIVILLIILLGMIVVPQT 128

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++K ++  +             L++    ++        +       I  +       
Sbjct: 129 IQQIKNMIISLPGFMSDISVKLNALNN---KIFKEYPNVSKIMSNAMQTINQKLGTIQTS 185

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I                  L I+ + +  F+   D       +     +     +  I  
Sbjct: 186 ILDKLSQTGNVTGNIFSNLLRIVLVPVVSFYMLLDKEKCIDFIMGFIPNENKDKFLSICS 245

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT-A 264
            + K       G  I+AI  G++   A  +  V   + +G++T +  +IP   P      
Sbjct: 246 DMDKAYSEFIRGRLIMAIFVGVLTAIALIIMKVDFAIIIGILTMVGDIIPYIGPFIAVTP 305

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
             I      +   A  + +      ++ +  L P L+G  I +  L     L+ G    G
Sbjct: 306 AFILAF-LDSPLKAIVVVVVFVSIQWVENNILAPKLLGSKIGINPLLVIVSLIIGGGMFG 364

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
           ++G+ +    +A + +++      IK
Sbjct: 365 VVGMILSVPFVATVKILYLHFKDKIK 390


>gi|152993672|ref|YP_001359393.1| hypothetical protein SUN_2095 [Sulfurovum sp. NBC37-1]
 gi|151425533|dbj|BAF73036.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 347

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 49/358 (13%), Positives = 127/358 (35%), Gaps = 26/358 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + N   ++  + +F ++ +    + F  P+  A+++   ++ +    I   + S    A 
Sbjct: 2   ISNKSLMITALFVFTVIGAYSIYQPFLLPLSVAILLTMATYNLTKKMIKFFK-SRKLSAG 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IAT+ ++ +   P++++   G+  M +L                                
Sbjct: 61  IATLLLVLIIFAPIVYMATTGVGYMTQL---------------DVEKIKHVTEVFKTFGE 105

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           +       +            +     + +  G + + +  ++I +++  F     G   
Sbjct: 106 EIPFVKGWVHTALSDKAIAGYVQDATSYLTTAGSVGIGFVKNMILVLVFYFLINYYGERF 165

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + +L   +      K+   V   +   F  + I AI EG + G      G    +  
Sbjct: 166 FELIRALLP-INKMKSAKMIHEVSSTMEVVFYSIIITAIFEGFLFGIMVSYFGFNGLLFG 224

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG- 302
            +      +   G  + +  VS+Y     +   A  +  +  + + I+ D  ++P ++  
Sbjct: 225 MIYGFASLIPLIGGAVVWVPVSLYAWTTIDANTAIFIASYSVVVISIIADTFIKPVIIKV 284

Query: 303 -------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                    I++  +  FF ++ G+ T G  G+ +GP + + +  I +  I    + +
Sbjct: 285 IKEDLLKSNIEVNEIVIFFSILAGMSTYGFWGMILGPAITSFLIAITRIYIEYNSKEQ 342


>gi|258513479|ref|YP_003189701.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777184|gb|ACV61078.1| sporulation integral membrane protein YtvI [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 356

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 97/324 (29%), Gaps = 3/324 (0%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I            P L   II  T  P+             +  +    +++ L  +  +
Sbjct: 25  IYYLFRLTYHLTFPFLVGTIISLTLEPLIVKLQRNSV-PRIYSVLFVVFAIVLLTGLLTM 83

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           +L Y    E+  L+++     +      ++L +         +  +   +          
Sbjct: 84  WLVYGLTAEIHTLINEYPAIVKALQLKQQFLLERMSHYQ--NILPEEFIYNLKEYSNKVN 141

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                 I    +          D  L  + +++ +FFF  +     ++L           
Sbjct: 142 DYIVGMISKTIQVVFVLLKTVPDKLLIYVIVVMYIFFFSMEWPKYKERLKCSISEDLWKK 201

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             +I       I        IIA+  GL++     L      + + ++    + IP    
Sbjct: 202 TSQIVNDTKIGIVGYLKAQLIIALISGLIILIGLLLIKSQFVLIITIMCIFASFIPFLGV 261

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                          + +     +   + + +V   + P ++G  + +  +     L  G
Sbjct: 262 NIVLVPWAIYSAFFCLESFALELIAIMVTVSVVRHIIEPKILGDKLGIQPIGILVALFIG 321

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
              +G  GL +GP+ + +   + K
Sbjct: 322 FELVGFWGLILGPLGLIVFNSMVK 345


>gi|315636913|ref|ZP_07892137.1| permease [Arcobacter butzleri JV22]
 gi|315478743|gb|EFU69452.1| permease [Arcobacter butzleri JV22]
          Length = 345

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/333 (17%), Positives = 115/333 (34%), Gaps = 19/333 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + MF+++ S   L     P+  A  I F    + +            L +IA    + + 
Sbjct: 2   LFMFLVIYSFNSLSSILTPIAIAFFIWFLINALANEIKKIPFIKQKILNIIAIPLSLFII 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           I  ++ +  +    M EL S +   +     V   +S               +     L+
Sbjct: 62  IYFMIKVGAFITSSMIELSSIISQLDSKINIVIEKIS-----------IMTSIDLKDPLE 110

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              + F  ++ ++ I    S      +   L ++F++I   FF +    +        + 
Sbjct: 111 KFFQEFNLSSALNKIFTAFSSIFSNLVQIFLYVLFLLIDQQFFNQKLNVL------FSKE 164

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                 + I   V K +R+  L  TI+++  G +         +   +  G I  I+  I
Sbjct: 165 ENRQKAEHILTSVSKGVRTYILITTIVSLVTGFLTFIICQYFSLQGAILWGFIAFILNFI 224

Query: 255 PGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P    I          L+   +  +   LF    I  F+V   + P L+G  + +     
Sbjct: 225 PTIGSIIAVLIPTIFALIQFTDYSDIVGLFTALVIIQFVVGNIIYPKLMGNKLNISQFVV 284

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              LV      G +G+F+   +M ++ +I  + 
Sbjct: 285 ILSLVIWGAMWGTIGMFLAVPMMMILLIILSQF 317


>gi|110668328|ref|YP_658139.1| permease [Haloquadratum walsbyi DSM 16790]
 gi|109626075|emb|CAJ52526.1| predicted transporter (predicted permease) [Haloquadratum walsbyi
           DSM 16790]
          Length = 417

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 107/356 (30%), Gaps = 32/356 (8%)

Query: 1   MRETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M    ++   +  W+I   +    ++ +  F   ++  L   + + P+Y     +    S
Sbjct: 1   MSSRTIDRTQLAWWVIGFALAGALIFVVYSFIGTIVFGLFFYYATRPLYQRINRQIGPPS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A+   +  +  F++ L                      +        L D P     
Sbjct: 61  LAAAIALLLLALPAFLLVLYTAAIA-----------ANELIKLTNQTLVQLVDSPITSQQ 109

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               T      Q                 +   A  F  +     + +  MI   F+  R
Sbjct: 110 LAQITDIERLIQIELTQLTPDQIRRVFSSLGS-AGNFLSVIGVGLVHLFVMIALAFYLLR 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-- 237
           D   +S+ + S          +     V     S F G  + A+  G +   AY +    
Sbjct: 169 DDHQLSRWVRSRFGDE-RGVLETYLDAVDNDFTSIFFGNILNAVITGTIGVLAYSILNIT 227

Query: 238 ------VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFL 283
                 +P+   LG++  + ++IP              L   +         F A+ + +
Sbjct: 228 APAGVAIPAAALLGLVAGVASLIPVVGMKLVYVPVAVYLAVTSYFTNPETLWFTASFVAV 287

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              I   I D  LRP++ G    L           G    G  G+F+ P+++ L+ 
Sbjct: 288 SLIIVDTIPDLVLRPYVSGRR--LHVGAVMVAYTFGPLLFGWYGVFLAPIILVLVV 341


>gi|30020062|ref|NP_831693.1| hypothetical protein BC1923 [Bacillus cereus ATCC 14579]
 gi|228952327|ref|ZP_04114415.1| UPF0118 membrane protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228958236|ref|ZP_04119965.1| UPF0118 membrane protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|229069498|ref|ZP_04202787.1| UPF0118 membrane protein [Bacillus cereus F65185]
 gi|229079130|ref|ZP_04211679.1| UPF0118 membrane protein [Bacillus cereus Rock4-2]
 gi|229127355|ref|ZP_04256351.1| UPF0118 membrane protein [Bacillus cereus BDRD-Cer4]
 gi|229144565|ref|ZP_04272968.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST24]
 gi|229150183|ref|ZP_04278405.1| UPF0118 membrane protein [Bacillus cereus m1550]
 gi|229178354|ref|ZP_04305723.1| UPF0118 membrane protein [Bacillus cereus 172560W]
 gi|296502546|ref|YP_003664246.1| hypothetical protein BMB171_C1711 [Bacillus thuringiensis BMB171]
 gi|29895612|gb|AAP08894.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|228605084|gb|EEK62536.1| UPF0118 membrane protein [Bacillus cereus 172560W]
 gi|228633302|gb|EEK89909.1| UPF0118 membrane protein [Bacillus cereus m1550]
 gi|228638978|gb|EEK95405.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST24]
 gi|228656188|gb|EEL12030.1| UPF0118 membrane protein [Bacillus cereus BDRD-Cer4]
 gi|228704147|gb|EEL56584.1| UPF0118 membrane protein [Bacillus cereus Rock4-2]
 gi|228713637|gb|EEL65523.1| UPF0118 membrane protein [Bacillus cereus F65185]
 gi|228801445|gb|EEM48333.1| UPF0118 membrane protein [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228807323|gb|EEM53854.1| UPF0118 membrane protein [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|296323598|gb|ADH06526.1| hypothetical protein BMB171_C1711 [Bacillus thuringiensis BMB171]
          Length = 337

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|311029884|ref|ZP_07707974.1| hypothetical protein Bm3-1_04891 [Bacillus sp. m3-13]
          Length = 352

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 93/310 (30%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
               P++ ALI      P+     ++ +        I  +  +    +   FL    + E
Sbjct: 28  PVSVPIIIALITALFLEPLVRLLQARAKLKRNLSVFIVFLLFLTSIGIIGYFLTTKVITE 87

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              LV            V R                        +              F
Sbjct: 88  GINLVENAPSYINEVNRVWRDFQSDMNNASEDLPPEFVTEISLQVDKFLYDLRIYLTDLF 147

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             +          +Y +S +  +IALF F  D   +   L S  +    A  K +S  + 
Sbjct: 148 NIQNVKNIFTNIPNYLVSFLVYLIALFLFLIDMPRLKAGLYSHLKEETAAKVKFMSSRLS 207

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            VI   F    ++++                  + +  I  ++  IP    I        
Sbjct: 208 YVIFGFFKAQFLVSVIIFFTSLIGLLFIAPEVALLMSFIIWLIDFIPIIGSIVILGPWAI 267

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                            AI L ++ +T+ P ++G  I L  L T   +  G++ +G+LG 
Sbjct: 268 FHFITGDIGLGTQLSILAIVLLVIRRTVEPKVMGSHIGLSPLATLIAMYLGLKLLGILGF 327

Query: 329 FIGPVLMALI 338
            +GP+L+   
Sbjct: 328 IVGPLLLIAF 337


>gi|126735841|ref|ZP_01751586.1| hypothetical protein RCCS2_18236 [Roseobacter sp. CCS2]
 gi|126715028|gb|EBA11894.1| hypothetical protein RCCS2_18236 [Roseobacter sp. CCS2]
          Length = 381

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/342 (14%), Positives = 114/342 (33%), Gaps = 21/342 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ET     G +  +   ++L  L   +     + +A+I+   +  + +    ++       
Sbjct: 16  ETTRLQTGALLIIAFAVVLFLLVQARFVLISLATAIILFSLTSDVINFIARQRVGPFRIP 75

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A+++ M L    LL L    + ++  ++   +   +        L    G      +
Sbjct: 76  NTLASIAAMVLIAAALLTLTSILLAQVNTVLVTTLSYAERAPSAVASLFAFLGEDSQLAV 135

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +    S                    I  +               + +I+ + F + +  
Sbjct: 136 FNALQSVE------------------ISSYLRGAASQASGVTQGTVLIILFVGFLFAERI 177

Query: 183 SISQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +L SL           KI + +   +    L  T+I+   G ++        +   
Sbjct: 178 WFQTKLLSLVGDEVQAERVGKIIQSIIHRVNYYLLVKTVISAITGAMIFVLAQAFSLELA 237

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPF 299
            +LG+IT ++  IP    I  TA+   +     G+      +F    +  FI    + P 
Sbjct: 238 TSLGIITFVLNFIPNIGSIVATALIALVAHVELGDATITLAIFAIAGVIQFINGSIIDPM 297

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+G  ++L        L       G+ G+F+   +M ++ V+
Sbjct: 298 LMGRALRLSSFGIILSLAFWGAVWGIPGMFLSVPIMVMLLVV 339


>gi|126180375|ref|YP_001048340.1| hypothetical protein Memar_2437 [Methanoculleus marisnigri JR1]
 gi|125863169|gb|ABN58358.1| protein of unknown function UPF0118 [Methanoculleus marisnigri JR1]
          Length = 341

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 96/338 (28%), Gaps = 26/338 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +    + I+L  +        P+L A      + P       ++       A +   
Sbjct: 12  RIAIVGAAVVIVLAGIRVATPILGPLLVAAFFAMITAPAMKWLTRRRVPPLLAAATVV-- 69

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                 I     +  +        +  +             L+D    +    +W     
Sbjct: 70  ---AGLIGIFAGMIIFLGAAFTGFIRTLPQYQASLEAHAAVLADYGIDIGRFTIWDYIDQ 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                              FI + A+       +  +    + + + F   +   ++  L
Sbjct: 127 ------------------GFILQQATELARQIGNIAVDAFLVFVGIGFLLLEAPRLAAVL 168

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                     Y  +      K++    +  T + +  G+  G    L GV   V  G I 
Sbjct: 169 ARHLGPESAPY--RHLSQSGKILIDYVVVRTKVNLITGVGTGLFLTLLGVDFAVLWGFIA 226

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +++ +P    +      ++  LI+     A  +    A+     +    P + G  + L
Sbjct: 227 FVLSYVPYIGLVVAAIPPTLLALIEFGPAGAVAVIAAVALIDAAAENLFLPRIAGRELNL 286

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                 F ++     +G +G+F+   L   + +  +  
Sbjct: 287 SPFVVLFSVIFWGFILGAVGIFLAIPLTIAVKLFLESW 324


>gi|28379561|ref|NP_786453.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|28272401|emb|CAD65324.1| transport protein [Lactobacillus plantarum WCFS1]
          Length = 360

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 107/331 (32%), Gaps = 17/331 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R  ++ +I+++LY      + +L   I  F    +  +     +   T + ++    V+ 
Sbjct: 18  RACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTIIVLVVYALVIL 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                +       + +       V    Q+       +       +      K L     
Sbjct: 78  GIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESDILKQL----- 132

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                       GI  + ++ +  G + L + LS I         ++      + L S  
Sbjct: 133 ----------KGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F       ++              +IAI   ++  +   +  +P  ++LG++  I++
Sbjct: 183 GWFFQDVHF-FAKKFVNSFGVVLEAQFLIAIVNTVITVTFMAILKMPQLISLGLMIFILS 241

Query: 253 MIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP    I     +S+     G +     + L   +   +    L P  +    +LP   
Sbjct: 242 LIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNPKFMSSRTELPIFY 301

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           TF  L+   R  G+ GL +G  +   I  I 
Sbjct: 302 TFVVLLVSERLFGVWGLIVGVPIFNFILDII 332


>gi|308181786|ref|YP_003925914.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308047277|gb|ADN99820.1| transport protein [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 360

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 107/331 (32%), Gaps = 17/331 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R  ++ +I+++LY      + +L   I  F    +  +     +   T + ++    V+ 
Sbjct: 18  RACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTIIVLVVYALVIL 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                +       + +       V    Q+       +       +      K L     
Sbjct: 78  GIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESDILKQL----- 132

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                       GI  + ++ +  G + L + LS I         ++      + L S  
Sbjct: 133 ----------KGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F       ++              +IAI   ++  +   +  +P  ++LG++  I++
Sbjct: 183 GWFFQDVHF-FAKKFVNSFGVVLEAQFLIAIVNTVITVAFMAILKMPQLISLGLMIFILS 241

Query: 253 MIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP    I     +S+     G +     + L   +   +    L P  +    +LP   
Sbjct: 242 LIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNPKFMSSRTELPIFY 301

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           TF  L+   R  G+ GL +G  +   I  I 
Sbjct: 302 TFVVLLVSERLFGVWGLIVGVPIFNFILDII 332


>gi|293552763|ref|ZP_06673424.1| transport protein [Enterococcus faecium E1039]
 gi|293559692|ref|ZP_06676220.1| transport protein [Enterococcus faecium E1162]
 gi|293569936|ref|ZP_06681023.1| transport protein [Enterococcus faecium E1071]
 gi|294615221|ref|ZP_06695102.1| transport protein [Enterococcus faecium E1636]
 gi|291587684|gb|EFF19561.1| transport protein [Enterococcus faecium E1071]
 gi|291591945|gb|EFF23573.1| transport protein [Enterococcus faecium E1636]
 gi|291603072|gb|EFF33263.1| transport protein [Enterococcus faecium E1039]
 gi|291606367|gb|EFF35773.1| transport protein [Enterococcus faecium E1162]
          Length = 345

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 107/342 (31%), Gaps = 17/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDADPVLQYIHTYIERND 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +       +   +     F     
Sbjct: 125 FFEQLQNGASIALGYLQDIGKMAVAFAMSFILSFFFMIEKKKTIVFSRLFLKSEFSWFFQ 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I    D                              +IA+   L+   A  + G    +
Sbjct: 185 DIYYFADKFV----------------NTFGLVLEAQFVIALLNTLLTTIALAVFGFHQLL 228

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I+++IP    I     +S     +G I +   + +   I   I    L P L+
Sbjct: 229 SLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNPKLM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +LP   TF  L+   R  G+ GL +G  +      + K
Sbjct: 289 SSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLK 330


>gi|159906093|ref|YP_001549755.1| hypothetical protein MmarC6_1711 [Methanococcus maripaludis C6]
 gi|159887586|gb|ABX02523.1| protein of unknown function UPF0118 [Methanococcus maripaludis C6]
          Length = 336

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 53/337 (15%), Positives = 119/337 (35%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  ++      L     F   +  A    + + P +++         T  A+++ +
Sbjct: 7   RFIMRIFVLVSFAAVLMIAVPFLDTIAFACAFAYMTEPFFNAVRRYTG--RTIGAILSIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  ++ +    +  +  L             +          +    +  + L+
Sbjct: 65  MVTVPALSLVVLILTDVVEFLNTL---------DVQSLIDNTIQFVSYLGLQNIAQEDLN 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S              + I      F    +   L+        ++F +DG      +
Sbjct: 116 PILSELWTFLKPTINKMAEQIYGLPLLFIKGMITVFLT--------YYFLKDGHRFKDAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + A   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIAGFWAIGLPNPVTLGALS 227

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P     +    +S+Y +  G    A  LF +G I L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSLYYIAVGMYSKAILLFGFGVIFLSLAPDFVIRPRLVNQESD 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPAIALVAFLMGPLALGVTGFALGPLIMGTFDAIFR 324


>gi|294496066|ref|YP_003542559.1| hypothetical protein Mmah_1416 [Methanohalophilus mahii DSM 5219]
 gi|292667065|gb|ADE36914.1| protein of unknown function UPF0118 [Methanohalophilus mahii DSM
           5219]
          Length = 340

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 128/329 (38%), Gaps = 17/329 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y L  +     +A+II   + P++S    K +      +++     +   I+PL ++   
Sbjct: 28  YALYPYIGAFFAAVIIYVITNPVHSYITKKLKLDMRITSIMIIFLSLVTIIIPLYYIIIL 87

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + + K+L++   L         + + +I   +                  L    L   
Sbjct: 88  LLEQAKQLMNIARLNWDILEENIQIIDEIAPALNI---------------ELKMAELVHI 132

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
             +FI  F         +  + +  M+  L++         +++              + 
Sbjct: 133 IEEFITGFIFGTIQNLGNQLIGLAIMVFLLYYLLSTDNKKLEEMALNILPFSTENKLHLL 192

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFT 263
             +  +  ST LG+  IA+ +G VL   + L G+   +  G IT I+++IP   P + + 
Sbjct: 193 NEMRNITYSTILGILFIALFQGGVLTITFLLLGIEGALLWGFITLILSIIPFIGPPLVWG 252

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++Y +I+G+    T +F+ G       D  LRP++      +  L +  GL  G+   
Sbjct: 253 PATVYKIIEGDFIAGTIIFVAGMFISNF-DYVLRPYIQEKFAAIHPLISLLGLFIGIYLF 311

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           G +GL +GPVL++   ++ K       + 
Sbjct: 312 GAIGLVVGPVLLSCFILMLKMFNQEYIKE 340


>gi|294102743|ref|YP_003554601.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
 gi|293617723|gb|ADE57877.1| protein of unknown function UPF0118 [Aminobacterium colombiense DSM
           12261]
          Length = 355

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 108/343 (31%), Gaps = 27/343 (7%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  + +    + ++ +    + L+F +G   P++ A +I +   P+  +   KK      
Sbjct: 20  RYGLRSQVFFLGFLSIVAAGMVLHFARGVVMPLVVAWLISYIFKPMIRTLERKKIPP--- 76

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V++  +++ +F+   L    +    +    +         + + +             
Sbjct: 77  --VLSITALIAVFLGLCLLALSFLYRRLVPFANAFPSYYDKLLLLVQEFGKTNDIPTEL- 133

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                              L+ +    +  +        +    ++  MI+ L F     
Sbjct: 134 ------------------LLEFDWGKRLTAWLITLPGTAISLVSNLFLMIVFLVFILLGS 175

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + S +L+           ++I   + K I        +I+   G+ +  A  L GV   
Sbjct: 176 PTSSDKLNRAFSPKTSVRVQQIIDSISKQIGRYLTTAVVISAMTGIAVWMALKLIGVDFS 235

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRP 298
           V  GV+  ++  IP    I  +   I +       +   A             +   L P
Sbjct: 236 VNWGVLAFLLNFIPYIGSILASIPPILVALVKFYPDFTPAIITAFALLSIQVGIGNLLAP 295

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++G  + +  +     L+      G  G  +   +  +I ++
Sbjct: 296 KVMGDTLDINPIVVLVSLLFWGWLWGGGGAVLAVPIAVVIKIV 338


>gi|294620005|ref|ZP_06699370.1| transport protein [Enterococcus faecium E1679]
 gi|294622423|ref|ZP_06701447.1| transport protein [Enterococcus faecium U0317]
 gi|291593727|gb|EFF25236.1| transport protein [Enterococcus faecium E1679]
 gi|291598067|gb|EFF29175.1| transport protein [Enterococcus faecium U0317]
          Length = 345

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 107/342 (31%), Gaps = 17/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVINFYEHQPKDADPVLQYIHTYIERND 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +       +   +     F     
Sbjct: 125 FFEQLQNGASIALGYLQDIGKMAVAFAMSFILSFFFMIEKKKTIVFSRLFLKSEFSWFFQ 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            I    D                              ++A+   L+   A  + G    +
Sbjct: 185 DIYYFADKFV----------------NTFGLVLEAQFVVALLNTLLTTIALAVFGFHQLL 228

Query: 243 ALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  I+++IP    I     +S     +G I +   + +   I   I    L P L+
Sbjct: 229 SLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILITILIVHLIESYVLNPKLM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               +LP   TF  L+   R  G+ GL +G  +      + K
Sbjct: 289 SSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLK 330


>gi|75759897|ref|ZP_00739969.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228939085|ref|ZP_04101681.1| UPF0118 membrane protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228969054|ref|ZP_04129975.1| UPF0118 membrane protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228971962|ref|ZP_04132581.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228978574|ref|ZP_04138948.1| UPF0118 membrane protein [Bacillus thuringiensis Bt407]
 gi|74492599|gb|EAO55743.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228781124|gb|EEM29328.1| UPF0118 membrane protein [Bacillus thuringiensis Bt407]
 gi|228787733|gb|EEM35693.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228790658|gb|EEM38338.1| UPF0118 membrane protein [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228820564|gb|EEM66593.1| UPF0118 membrane protein [Bacillus thuringiensis serovar berliner
           ATCC 10792]
          Length = 337

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYVLSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|254557702|ref|YP_003064119.1| transport protein [Lactobacillus plantarum JDM1]
 gi|254046629|gb|ACT63422.1| transport protein [Lactobacillus plantarum JDM1]
          Length = 360

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 107/331 (32%), Gaps = 17/331 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R  ++ +I+++LY      + +L   I  F    +  +     +   T + ++    V+ 
Sbjct: 18  RACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTIIVLVVYALVIL 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                +       + +       V    Q+       +       +      K L     
Sbjct: 78  GIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESDILKQL----- 132

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                       GI  + ++ +  G + L + LS I         ++      + L S  
Sbjct: 133 ----------KGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F       ++              +IAI   ++  +   +  +P  ++LG++  I++
Sbjct: 183 GWFFQDVHF-FAKKFVNSFGVVLEAQFLIAIVNTVITVAFMAILKMPQLISLGLMIFILS 241

Query: 253 MIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP    I     +S+     G +     + L   +   +    L P  +    +LP   
Sbjct: 242 LIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNPKFMSSRTELPIFY 301

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           TF  L+   R  G+ GL +G  +   I  I 
Sbjct: 302 TFVVLLVSERLFGVWGLIVGVPIFNFILDII 332


>gi|300769497|ref|ZP_07079383.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300492912|gb|EFK28094.1| membrane protein [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 357

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/331 (15%), Positives = 107/331 (32%), Gaps = 17/331 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R  ++ +I+++LY      + +L   I  F    +  +     +   T + ++    V+ 
Sbjct: 15  RACVLALIVLTLYLASSMMSIILLTFIFTFLVTRLVRAVRRWVKIPPTIIVLVVYALVIL 74

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
                +       + +       V    Q+       +       +      K L     
Sbjct: 75  GIYFAVSIYLPQLIKQTFLTFESVYRFYQNPSHDTNQVLTWVTSYFQESDILKQL----- 129

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                       GI  + ++ +  G + L + LS I         ++      + L S  
Sbjct: 130 ----------KGGISVVFQYITNIGNMGLTFFLSFILSFFFTIEDHQMRVFTKRFLTSTF 179

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              F       ++              +IAI   ++  +   +  +P  ++LG++  I++
Sbjct: 180 GWFFQDVHF-FAKKFVNSFGVVLEAQFLIAIVNTVITVAFMAILKMPQLISLGLMIFILS 238

Query: 253 MIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +IP    I     +S+     G +     + L   +   +    L P  +    +LP   
Sbjct: 239 LIPVAGVIISVVPLSLIAYSVGGLRYVVYMLLMILVVHALEAYVLNPKFMSSRTELPIFY 298

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           TF  L+   R  G+ GL +G  +   I  I 
Sbjct: 299 TFVVLLVSERLFGVWGLIVGVPIFNFILDII 329


>gi|259418235|ref|ZP_05742153.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
 gi|259345630|gb|EEW57474.1| conserved hypothetical protein [Silicibacter sp. TrichCH4B]
          Length = 379

 Score = 91.2 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 113/342 (33%), Gaps = 21/342 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                    +  +   ++L  L   +     +  A+I+   +  +      ++       
Sbjct: 17  SHARLRTVALIIIAFAVVLFLLVQARFLLISLAVAIILFSLTSDVIRLIARQRIGRLGVP 76

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +A+V+ + L    LL L    + ++  ++S  +   +        L    G       
Sbjct: 77  NWLASVAALLLISTALLLLSSILLAQLNTVLSTTLSYAERAPSAVASLFAWMGE------ 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                        +    L +     +  +         +     + +I+ + F + +  
Sbjct: 131 ------------DVERAVLNSLNSVELSSYVRTVAGQAGNLMQGTVLVILFVGFLFAERI 178

Query: 183 SISQQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             S ++ +            KI   +   +    L  T +++  G+++ +     G+   
Sbjct: 179 WFSTKMSNFFGDEAQAERANKIITSIIHRVNYYLLVKTAVSVITGVMVYAVASFFGIELA 238

Query: 242 VALGVITAIMAMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           ++LG++T I+  IP    I        +  +  G   +   LFL   +  F+    + P 
Sbjct: 239 LSLGILTFILNYIPNIGSIVATGMVALVGFVETGEPTSTALLFLITGLIQFVNGNVIDPL 298

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L+G  ++L        L       G+ G+F+   +M ++ VI
Sbjct: 299 LMGRALRLSSFGIILSLAFWGAVWGVPGMFLSVPIMVMMLVI 340


>gi|271968022|ref|YP_003342218.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270511197|gb|ACZ89475.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 432

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 51/324 (15%), Positives = 92/324 (28%), Gaps = 21/324 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYF------LKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           L         ++ I     YF      L+    PV  AL++    +P+            
Sbjct: 16  LLRLAAWSLCLIIIGWAVFYFAQFIAMLRIVILPVAVALLLTALLFPVTRRL-RAMGMRP 74

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            +   +  +  + +      F+      E   LV +V   ++                W 
Sbjct: 75  IYATWVTLLIALAVLGGIGWFIGVRANDEFPGLVDQVRATSKTVED------------WL 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                       S  I       T   + I +       + L+   SI+ ++   FF  +
Sbjct: 123 YTGPLHLQPSQLSKWIDEIAVQVTTQRNQITQTVLTGATVALEVLASIVLLLFVTFFLLK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           DG  I            P    +  R     +     G   +A   G+++G      GVP
Sbjct: 183 DGDRIWAWFLRAFGGTAP-RVDRAGRAAWVTLSHYVQGTVAVAGVHGVIMGIVLAGMGVP 241

Query: 240 SHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
               L V+  + + IP           ++  L       A        +E  + +  L+P
Sbjct: 242 LWAPLAVLIFLASFIPIVGIFFAGAVATLVTLGAKGPIYALIFLGILVVEQQLENHVLQP 301

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRT 322
            +VG  +    L     L  G   
Sbjct: 302 LIVGRALSFHPLAIILVLAVGGIL 325


>gi|297191311|ref|ZP_06908709.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
 gi|297150859|gb|EFH30832.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486]
          Length = 392

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 80/308 (25%), Gaps = 15/308 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I   + ++ +   L         V   L++     P+                 I+  
Sbjct: 57  RIIAVAVAVYSVFAVLGRFHEIAVAVFLGLVVTAVLRPVADLVAR--VLPRPLAVAISLF 114

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + L +  L  +      E   LV +     +                       +   
Sbjct: 115 GTIALVLGVLALVGEAVAGERTTLVREFRTGIERIENRLER------------PPFRVDP 162

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        L ++    +   A       ++        +    FF   G       
Sbjct: 163 EALTDVQSRIGQLLSSHRSTVISEALSGAGKLVEVLTVFALALFCSVFFIHSGDRQWGWF 222

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 +         R   +       G+ ++A    +++G A +  GVP  + L ++ 
Sbjct: 223 CGQLPPVARRRATVAGRAAWRTFTGYTHGILLVAATNAILVGIALFALGVPLALPLALLE 282

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A +P    P++    ++  L       A  +     +   I    L P ++   ++L
Sbjct: 283 FFAAFVPLVGSPVALAVAAVVALAAKGPLTAAVVVALIVVIGQIEGHLLHPVVMSWAVRL 342

Query: 308 PFLPTFFG 315
             +     
Sbjct: 343 HPVVVALS 350


>gi|227530005|ref|ZP_03960054.1| permease [Lactobacillus vaginalis ATCC 49540]
 gi|227350084|gb|EEJ40375.1| permease [Lactobacillus vaginalis ATCC 49540]
          Length = 367

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 53/332 (15%), Positives = 114/332 (34%), Gaps = 15/332 (4%)

Query: 32  APVLSALIIGFTSWPIYSSFISKK----------EESSTFLAVIATVSVMCLFIVPLLFL 81
            P+L   +I +    + + +              +    F  V++ ++++ + ++    +
Sbjct: 41  MPLLIGGVIAYIVNLLLNQYEHLYSRIFKTKWAQKYRRLFGIVLSYLTIILILVIVSSLV 100

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               +  +K LV+         + V     D+     + +L     +             
Sbjct: 101 IPELISCIKLLVANHGQVVNRFVKVIEHNKDLNTLWNSFDLEKIKWNQVGKYLTAGF--- 157

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  I   AS          +++ F I  L +       I + +++    L   +  
Sbjct: 158 -GGTFKAIISTASSVFSTVATAVVALFFSIYLLIYKETLSRQIKRLINAYLPQL-GKHIF 215

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++++      S  +G    A   G+       +  +P    +GV+TAI A+IP    I 
Sbjct: 216 YVTKVFNDSYSSYIVGQCKDAAILGIFCFIGMSVLRMPYASMIGVVTAIGALIPIIGAIL 275

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              V + ++   +   A    ++  I   + ++   P +VG  I LP +  F  ++ G  
Sbjct: 276 GAGVGVIIIFAVSPIQAGMFLIFIIILQQLDNRITYPLVVGKSIGLPSVWVFAAVIIGGG 335

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             G+LG+     L A I  I K        N+
Sbjct: 336 IYGILGMMFTVPLFAAIYKIIKTDTHKRLANE 367


>gi|297621135|ref|YP_003709272.1| hypothetical protein wcw_0904 [Waddlia chondrophila WSU 86-1044]
 gi|297376436|gb|ADI38266.1| putative membrane protein [Waddlia chondrophila WSU 86-1044]
          Length = 340

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 112/339 (33%), Gaps = 24/339 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  + ++++++I+  +   + FF P L ALII +    +                    +
Sbjct: 6   RFTLSFILVYMIVSIMIAGQAFFIPFLIALIISYFIIALAEWVKKIFRLPMPLA----YI 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +     +V    +       ++ L+    +  +    V   +SD                
Sbjct: 62  AAFSGILVFFYIVSTIVTNNVQSLIELAPVYQKKLEEVMNAVSDRFHFSK---------- 111

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              + + +   F   + +  I               L +IFMII  ++F+    +  +  
Sbjct: 112 --PNYQDMFREFNFGSILGSIALMIRDVARNAGVITLYVIFMIIEYYYFHDKMKAFFKTQ 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL         ++I+  + +  +S     T++++   ++        GV       ++ 
Sbjct: 170 KSL------ESAEQIASKIARKTQSYLRLKTLMSLVTAVLSYVLMIAVGVDFAEFWALLI 223

Query: 249 AIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  IP    I        + +L   + +    + +      FI+   + P ++G    
Sbjct: 224 FFLNYIPTIGSIVATAFPCLLTILQFQSFWPFAIISVGLISTQFIIGNIIEPRVMGKQFN 283

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L  L     L       G+ G+F+   ++ + ++I    
Sbjct: 284 LSGLVILVSLTISGTIWGITGMFLCVPILMITSIILNSF 322


>gi|269468325|gb|EEZ80001.1| permease [uncultured SUP05 cluster bacterium]
          Length = 356

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 71/361 (19%), Positives = 139/361 (38%), Gaps = 16/361 (4%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +    G M  +++  I   ++    F   +  AL+I   ++  Y     K   S++  A
Sbjct: 2   RIPYEHGFMLTLLILAIAGLIWLFTPFIPALFLALLIAIATFSQYIKLQKK--ISNSSSA 59

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++ T+ V  + I+PL ++     LE+  L+  +             L  I G   +  L 
Sbjct: 60  LLMTLLVTVVLILPLSYILLISGLEISALIQNINTNFTVEQSNQLLLQTITGLPLSDSLK 119

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               S   +        +K    DF          +   +   +I  I +L++FY DG S
Sbjct: 120 VTLNSALSNNLENFIINIK----DFSVVILKSIVSLSSHFIFFLIITIFSLYYFYIDGKS 175

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             ++L  L           +      +  +    + +IAI +GL+      + G+P    
Sbjct: 176 TVKRLKDLSPLEN-HLDDILFNQFSSLSITLVGSVLVIAILQGLIFSIGVMMIGLPVLFF 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVG 302
              +     +   G  I +  +S+YL  +G   +A  +  +GA+ +  I+D  +RP ++ 
Sbjct: 235 GIAMALASFIPVLGGLIIWLPLSLYLYAQGQTTDALIIVFFGAVIIGTIIDHFIRPMVIK 294

Query: 303 GPIKL--------PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              +           L T    + G+   G+LGLFIGP++ A+   I+    +    + +
Sbjct: 295 KFSQSSNQSSALDHTLITVLSTLAGIMQFGILGLFIGPIIAAMAISIFDVYAIKYAGSLD 354

Query: 355 K 355
           K
Sbjct: 355 K 355


>gi|229172646|ref|ZP_04300205.1| UPF0118 membrane protein [Bacillus cereus MM3]
 gi|228611117|gb|EEK68380.1| UPF0118 membrane protein [Bacillus cereus MM3]
          Length = 337

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 113/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVTFIGATLYKYLPVLTIQISQLIYQFRLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSNLKVFYEEI-TYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|219669720|ref|YP_002460155.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
 gi|219539980|gb|ACL21719.1| sporulation integral membrane protein YtvI [Desulfitobacterium
           hafniense DCB-2]
          Length = 365

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 92/300 (30%), Gaps = 4/300 (1%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +    L      F P + A  I     P+   F+   + S    AV+A V  +      +
Sbjct: 39  VFGQVLSQFLAAFLPFIIAFFIALLLEPLVLRFMQGLKASRPIAAVLALVLAILGIGSIV 98

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +      E+ +L +               L  I   +  +      +++     I S 
Sbjct: 99  FLIVVRLYTELSDLGNSFPSYGYLVGFFNNILGTIDNFIQLNPQIQISINNATQGLIDSL 158

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                 G   +  F S          + ++  ++A FF       +     +L    +  
Sbjct: 159 QGWALTGSKVLLNFISAL----PGVFIVLVVSVVATFFMSASYPGVKNFFSNLVPRKWKP 214

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             + +SR +   +        I+    G++L       G P    +G I+A++ ++P   
Sbjct: 215 GARSVSRALGAAVVGFVRAEVILISVTGIILTVGLLWMGNPYAFTIGFISALLDLLPIVG 274

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                   I  L      +     L   +   ++ + L P ++   I +  L T   +  
Sbjct: 275 TGMIFVPWIVGLFILGSVSEGIKLLIIYLIATVIRQILEPKVMSQNIGIHPLATIISMYV 334


>gi|322806902|emb|CBZ04472.1| membrane protein [Clostridium botulinum H04402 065]
          Length = 267

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 71/211 (33%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +        N    I        +   +  L    + I +++F   G  I Q+   +  
Sbjct: 51  ILNKVNGKIENYTVSIGENILNKFVGLGENILDYAVIPIIVYYFLAAGDKIIQKFFIIFP 110

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                  K +   + K++    +   I+ +   ++        G+   + L +I     +
Sbjct: 111 VKIRGMIKNVFEDIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNI 170

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P+  +  +I +    +   A    +       I    L P + G  + +  L   
Sbjct: 171 IPYFGPVIGSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVI 230

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L+ G +  G  G+ +   +  ++ +I+++
Sbjct: 231 LLLLIGGKIYGFAGMVLAIPIGVIMKIIYED 261


>gi|296106318|ref|YP_003618018.1| transmembrane permease [Legionella pneumophila 2300/99 Alcoy]
 gi|295648219|gb|ADG24066.1| transmembrane permease [Legionella pneumophila 2300/99 Alcoy]
          Length = 283

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 85/273 (31%), Positives = 139/273 (50%), Gaps = 1/273 (0%)

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            LF++PL +L    + E +  ++ +   N+ G   P +  +IP        +        
Sbjct: 3   LLFLIPLSWLIGILIKESQLFINFLQHINKEGGAAPEFFKNIPLVGDDLIQYWDVNIGKP 62

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                  + L          +  + G+        + F ++ LFFFYRDG  +  Q+  +
Sbjct: 63  GSIKEFLSNLHVTLTPT-SYYIKQIGVNLAHRSFQVGFTLLTLFFFYRDGDKLLLQIQHI 121

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           GE+     W + S  +P  +R T  G  ++ IG G+++G  Y L G P+    G ITA+ 
Sbjct: 122 GEYCLGDRWFRYSDRLPSALRGTVNGTIVVGIGVGILMGICYALVGFPAPTLTGFITALA 181

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           AMIP   PI F  V++ LL  G++     + +WG + +F+ D  ++P L+GG I+LPFL 
Sbjct: 182 AMIPFVVPIVFIIVALILLSVGSLIGGIIVLVWGTLVMFVADHFVKPVLIGGAIQLPFLA 241

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             FG++GGV T+GLLGLF+GP++M L   +W+E
Sbjct: 242 VLFGILGGVETLGLLGLFLGPMVMVLFVTLWQE 274


>gi|226954495|ref|ZP_03824959.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
 gi|226834766|gb|EEH67149.1| conserved hypothetical protein [Acinetobacter sp. ATCC 27244]
          Length = 358

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 107/340 (31%), Gaps = 18/340 (5%)

Query: 9   QGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           Q ++  ++  I+    L   +GF  P+L A I  +    +    +      ST       
Sbjct: 14  QTLVYILLFLILFGWLLKIGQGFLLPILVATIAMYILITLSHWLVKFPVLKST-PEWFRR 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+  FIV ++ L    +   +++++K+ +   +   V   ++   G   + +      
Sbjct: 73  ILVLISFIVVMVQLISLVITTGQKILAKMPIYEANIEQVFLHVNAYLGWSDSPDWQIFRE 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +               +    +     F       + +I+   F   +     ++
Sbjct: 133 MLMSQI--------------NLQSLITSTLTSFSALTGMFVVIIVYALFLLNERDQFVKK 178

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L            + +   + K I    +  T+I +    +     W  GV   +   +I
Sbjct: 179 LMIAFPDGKTEQTRLLITDINKKISEYLVVKTLINLILATICFVILWACGVEYALFWALI 238

Query: 248 TAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             +   IP    +      +   L   G++     + +   +    V   L P ++G  I
Sbjct: 239 IGLFNYIPYVGSLFGVIFPVLMTLAQTGSLKLTILVAILLTVAQMFVGNFLEPRMIGKQI 298

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L        L       G+ G  +   L ++  ++ +  
Sbjct: 299 NLSPFVVLLSLSLWSSLWGIAGAILAIPLTSIFVIVLEAF 338


>gi|167648175|ref|YP_001685838.1| hypothetical protein Caul_4216 [Caulobacter sp. K31]
 gi|167350605|gb|ABZ73340.1| protein of unknown function UPF0118 [Caulobacter sp. K31]
          Length = 346

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 83/307 (27%), Gaps = 20/307 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                   A+++      +      +          +A    +   +  +         +
Sbjct: 36  DVILMAFGAVLVAVLLNALAEPLHVRLRLRRPLALTLAVAVTIACVVSAIWTFGRQAEAQ 95

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L + +  A                 +   E W                     G  +
Sbjct: 96  FVALNAVLPRAWGELQSHLSTAPFGGAALAKLEDWR--------------------GFGW 135

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +     +         +  I ++ A  +      S       L         +++   + 
Sbjct: 136 LVSLGPKLAADAAGGLVGTIIVLFAGLYLAYHPGSYVGGALMLFPRPRRERARQVLDQIH 195

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +R   +G        G+  G    + GVPS  ALG+I  I   +P   P+      + 
Sbjct: 196 RALRQWLMGQLCSMALVGVTTGVGLAIVGVPSAAALGLIAGIGQFVPVIGPMVAPLPGLL 255

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           + ++        + L   +   +    + P ++    +LP   T F ++     +G LG+
Sbjct: 256 VALEAGPQTLLWVGLVYLVSAQLEANLITPLVLRQLAQLPMAVTLFAVLAMGVLLGPLGV 315

Query: 329 FIGPVLM 335
                L 
Sbjct: 316 LFATPLA 322


>gi|254557801|ref|YP_003064218.1| transport protein [Lactobacillus plantarum JDM1]
 gi|254046728|gb|ACT63521.1| transport protein [Lactobacillus plantarum JDM1]
          Length = 348

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 106/317 (33%), Gaps = 17/317 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 29  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A  +   + + +               + +   S  I +   L   GI
Sbjct: 89  DQLKVIPDMLAKAITNHPVLNKNIDKWV-----------NQAIHSSELIQNGKALLVTGI 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 138 KGLSEVGTGFTHVLMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              ++        +I     +++   + + G+PS + L +I  I+ ++P    +      
Sbjct: 193 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 252

Query: 267 IYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L    G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 253 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 312

Query: 326 LGLFIGPVLMALIAVIW 342
            GL IG  +++    I+
Sbjct: 313 WGLIIGIPIVSFFLDIF 329


>gi|134045790|ref|YP_001097276.1| hypothetical protein MmarC5_0751 [Methanococcus maripaludis C5]
 gi|132663415|gb|ABO35061.1| protein of unknown function UPF0118 [Methanococcus maripaludis C5]
          Length = 336

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 115/337 (34%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  ++      L     F   +  A    + + P +++         T  A+++ +
Sbjct: 7   RFIMRIFVLVSFTAVLMIAVPFLDTIAFACAFAYMTEPFFNAVRRYAG--RTLGAILSIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V    +  ++ +    +  +  L   V       I    +L                L 
Sbjct: 65  MVTVPALSLVVLILSDVVEFLNTL--NVPSLVDTTIQFVNYLGLQNIAQEDLNRILSELW 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I                             +  +  +   ++F +DG      +
Sbjct: 123 TFLKPTINKMAEQ---------------IYGIPLLFIKGLITVFLTYYFLKDGHRFKDAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + +   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLNEAYKNLFVVNALTSFTVGLISIAGFWAIGLPNPVTLGALS 227

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P     +    +S+Y +  G    A  LF +G I L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSLYYIAVGMYTKAILLFGFGVIFLSLAPDFAIRPRLVNHESD 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPAIALVAFLMGPLALGVTGFALGPLIMGTFDAIFR 324


>gi|323699207|ref|ZP_08111119.1| protein of unknown function UPF0118 [Desulfovibrio sp. ND132]
 gi|323459139|gb|EGB15004.1| protein of unknown function UPF0118 [Desulfovibrio desulfuricans
           ND132]
          Length = 377

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/321 (11%), Positives = 96/321 (29%), Gaps = 11/321 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++       ++  L +L G   P ++AL++ +   P+      +   +     ++  +
Sbjct: 15  RMVLGAGFFIGMVWLLDYLSGVLVPFVAALLVAYLLNPLTCWVERRVG-NRGVAVLLTML 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++      +L +    + E   +   +     +     +  + +P  +WA    T    
Sbjct: 74  LLLAAVAGVVLLVVPMMVKEFAHMGQVLSRLVSNTEFADKVAAHLPPDIWAWVRETAQSP 133

Query: 129 HPQSLKILSET-FLKTNGIDFIPRFASRFGMIFLDY---CLSIIFMIIALFFFYRDGFSI 184
             + L             +  +        +  ++       +  +++ + F   D   I
Sbjct: 134 EVRDLFTAQGALNAARTVLGNVVPGIRGVAVGAINAAAGLFGVFVILLYVIFLLADFGRI 193

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                      +            + +   F G  I+ +  G+++   + L G+P  + +
Sbjct: 194 KAGWQDYLPASYREGVVGFLDEFERTMGLYFRGQIIVCLLVGVLMSVGFVLIGLPLGLVM 253

Query: 245 GVITAIMAMIPGGAPISFTAVSIYL------LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           G++  I+ + P         V            +          L   +   I D  L P
Sbjct: 254 GMLIGILNIAPYLGVAGAVPVLFLAGLNSLEAGESIWLGIGLAVLVMGVVQVIQDAVLVP 313

Query: 299 FLVGGPIKLPFLPTFFGLVGG 319
            + G  + L        L   
Sbjct: 314 KIQGESLGLSPWLILLSLSIW 334


>gi|294677804|ref|YP_003578419.1| hypothetical protein RCAP_rcc02282 [Rhodobacter capsulatus SB 1003]
 gi|294476624|gb|ADE86012.1| protein of unknown function UPF0118, transmembrane [Rhodobacter
           capsulatus SB 1003]
          Length = 348

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 104/328 (31%), Gaps = 8/328 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q  +  + +   + +L  L+   AP+  AL++G    P+   +   +   +   +    +
Sbjct: 6   QLSLVALGLIASVAALAALRDLAAPMALALVVGVVLSPLSDLWERLRFSPAMGASASLVL 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           ++          L       + ELV +          V +    +  G+ A+        
Sbjct: 66  TLAA-----FGTLGLLLQPLIAELVHQAPKVWADSQEVMKAFRGLFAGLKAATRELSGAV 120

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +         +   +  +   A           L+  F+    FF            
Sbjct: 121 AEGARAEAGPAPQQMVDLPAVTTGALMIAPAIAAQALT--FVGTLFFFLLTRSEIYDWAA 178

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L          +  R    ++   FL +T+I    G+    A    G+P  ++ G++ 
Sbjct: 179 RRLVSPAGRGQLSQRLRRAEGIVSRYFLTITLINAALGIATAIALQALGLPGALSWGIVA 238

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +    P +     +   +      A  +  L     + +  + + P LVG  + L
Sbjct: 239 FLLNYVVYLGPAAVAVALLLAGVAAFDGGAAAVPVLVYGALITLEGQFVTPALVGRRMAL 298

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             L  F  L+ G+   G +G  +   L+
Sbjct: 299 NPLLVFVALLFGLWLWGAIGGIVALPLL 326


>gi|225012985|ref|ZP_03703402.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-2A]
 gi|225002884|gb|EEG40863.1| protein of unknown function UPF0118 [Flavobacteria bacterium
           MS024-2A]
          Length = 362

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 120/350 (34%), Gaps = 18/350 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I++ + + I+L  L  L+     ++ A +I     PI   FI +    +     +    
Sbjct: 13  AILQLLGIAIVLWLLLQLQTLLIYMIIAGVISLIGRPINQFFIKRLHFKNILATSLTLFI 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L I          + + + L           + V          +    ++ +  + 
Sbjct: 73  LLGLLISVFSLFVPLLIQQGENL---------SLLDVESLKKTTETLIQEISIYFQVDNS 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               ++  +   +      +P   ++   +   + + +  ++  LFFF +D       + 
Sbjct: 124 FWQQQLAVDNLFQNVNFGLLPELLNQILELLGGFTIGLFSVLFILFFFLKDSHLQDSIIL 183

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L         +K      +++   FLG+ +      ++      +  V +   +  + A
Sbjct: 184 TLVNDKITDRVEKSIEKTKRLLSRYFLGLLLQISILLIIYSIVLAVFKVENAFIIAFLCA 243

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNAT---------CLFLWGAIELFIVDKTLRPFL 300
           ++ +IP   PI    + + L +   I              + +   I   I +   +PF+
Sbjct: 244 LLNLIPYLGPIIGGLLMMTLTMSSFIGADFSSVILPKTSYVMIGFVIGQLIDNFFSQPFI 303

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               +K   L  F  ++     +G +G+ I   L   + VI +E +   K
Sbjct: 304 FSNSVKSHPLEIFIVILASGTLLGPVGMIIAIPLYTTLKVISQEFLAENK 353


>gi|209363980|ref|YP_001424515.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
 gi|207081913|gb|ABS76665.2| hypothetical membrane spanning protein [Coxiella burnetii Dugway
           5J108-111]
          Length = 376

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 102/341 (29%), Gaps = 21/341 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +  + ++ +I+  L+  +  F P+  AL++ +    + ++   +           A  
Sbjct: 39  NSVAAFALVVLIVYLLFIGRFLFLPLTIALVLWYVIISL-TALYQRIPFKKRLSHGFALF 97

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    + L   F      + +L+       Q    + RW + + GG            
Sbjct: 98  LAIVTTAIFLYLFFLMFTQSLPDLIEAGPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQI 157

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++       L     +F       F ++      +    ++                
Sbjct: 158 DLKNIFSELPIILSLTAANFTLVIVYLFFLLLEHRSFNQKLKLLCHSSKKY--------- 208

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I + + K + + F   T+I++   L+         + +        
Sbjct: 209 ---------KKVIEIIKEITKDVNNYFKVKTLISLITALLSYFVLLGFKINNAEFWSTFV 259

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  IP   P+      + +       +     L +       I+   + P  +G  + 
Sbjct: 260 FLLNYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRLN 319

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L  L     L       G +GLF+   +M ++ +I  +   
Sbjct: 320 LSPLVILLSLAFWGSIWGFIGLFLSVPIMVILTIILGKFPK 360


>gi|205375598|ref|ZP_03228385.1| hypothetical protein Bcoam_21753 [Bacillus coahuilensis m4-4]
          Length = 353

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 96/314 (30%), Gaps = 1/314 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           ++     P++SA I      P       +         +I  V  +    + L F+    
Sbjct: 25  YILPISIPLISAFITALFLDPAVRVLRKRFNIKRKLSVLIVFVLFLLFSGLSLYFITTKV 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E  +   ++                                    +     +      
Sbjct: 85  IGEAIQFAEEIPTYINQISDKWEIYEKDLLSASEDLPNEVVEQIQDEVGNFFNSVKSGLT 144

Query: 146 IDFI-PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            D++     S F     +Y ++I+  +IALF F  D   I   +              ++
Sbjct: 145 NDYVNLNKISSFIGGIPNYLVNILVYLIALFLFMIDLPKIRTTIYKHLTEKTADKVNFMT 204

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  V+        ++++   +            + + + V+  I+  IP    I   A
Sbjct: 205 SRLSYVVLGFLKAQFLVSVIIFIATLLGLLWIAPEAALVMSVVIWIVDFIPLIGSIVIMA 264

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                                A  L I+ +T+ P ++G  I L  L T   +  G++  G
Sbjct: 265 PWFTYHFITGNIGLGTELAILATVLLIIRRTVEPKVMGRHIGLSPLATLIAMYLGLKLFG 324

Query: 325 LLGLFIGPVLMALI 338
           LLG FIGP ++ L 
Sbjct: 325 LLGFFIGPFILILF 338


>gi|85709353|ref|ZP_01040418.1| hypothetical protein NAP1_10748 [Erythrobacter sp. NAP1]
 gi|85688063|gb|EAQ28067.1| hypothetical protein NAP1_10748 [Erythrobacter sp. NAP1]
          Length = 387

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 100/334 (29%), Gaps = 17/334 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           +     +   L  +   F P+++AL++     P+    + +    +   ++ + +    +
Sbjct: 38  FGAFLALPFVLSHMSVVFLPIVAALVLTILLSPLADWMV-RSGIPNALASLSSLLMFFGV 96

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L  +        + +   +   ++    +    +                   + +
Sbjct: 97  LVAALALILQPAAALFERMPEIIARVSERFAELQAEFAW-------------VSGIDEQM 143

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD-SLG 192
                       +   P              + ++ M +  FF       + + L     
Sbjct: 144 SGAMGEGDTREVVIAAPSMLEEIAFATPSVVVQVLVMFLMAFFMIEARGRMRRSLLFDRA 203

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    +  R V   + +  + +++I  G G+V+G A W  G+ + +  G +  I+ 
Sbjct: 204 SFGSSVRAARAIREVQDRVAAYIITVSMINAGLGIVVGLAAWAWGLDAPIMWGGLAMILN 263

Query: 253 MIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP   P+          L     I+      L   +   I    + P ++G    +  +
Sbjct: 264 FIPYIGPLALMALLAVFGLGTADTIWLGLVPALSYMVLNAIEGNAVTPSILGARFTMSPV 323

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                L       G +G  +   ++  +  ++  
Sbjct: 324 MILIALSYFTWIWGAIGALLSVPILLTLTGLFDH 357


>gi|103486897|ref|YP_616458.1| hypothetical protein Sala_1411 [Sphingopyxis alaskensis RB2256]
 gi|98976974|gb|ABF53125.1| protein of unknown function UPF0118 [Sphingopyxis alaskensis
           RB2256]
          Length = 369

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 98/330 (29%), Gaps = 20/330 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           W+ + + +     L      + +A+++                 +  +  +I  ++++  
Sbjct: 43  WLGLALAIGLCIILIQPILLIFAAIVLASMLDGGTRLLGRVLPVARGWRLLIICLALLAF 102

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               +LF     + +   L   V+   +                          S     
Sbjct: 103 LAWTILFAGSQIVAQAAALQGVVMGQVERIAGW--------------------ASDHGMG 142

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
               +T    + I       +      L    S++ +++   F   +     + +  +  
Sbjct: 143 SFQLDTRTIADNIAGTVGRVTAAVGTVLGALTSLVMIVVLGIFIAIEPRLYERGVAWMLP 202

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +   +  +   +R    G  +    EG+    A    G+P    LG++T ++A 
Sbjct: 203 MNARENFYITTARMGFTLRRLMAGRLLGMFVEGIGTWLACLAVGIPMAALLGLLTGLLAF 262

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP    I    + + +                 +   +    + P +    + L      
Sbjct: 263 IPNIGAILSGVLLVLVGFSAGTDTGLWAIGIYLVVQTVDGYLIVPMVAKKTVDLAPALVL 322

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +     +GL+GLF+   ++A+I V  +
Sbjct: 323 GAQILFGALLGLMGLFLADPIVAMIKVALE 352


>gi|300115142|ref|YP_003761717.1| hypothetical protein Nwat_2619 [Nitrosococcus watsonii C-113]
 gi|299541079|gb|ADJ29396.1| protein of unknown function UPF0118 [Nitrosococcus watsonii C-113]
          Length = 350

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 40/312 (12%), Positives = 91/312 (29%), Gaps = 16/312 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
            +++G     + +   +    S  +   +    V  L I+  L L         EL   +
Sbjct: 45  GILVGVFLRGVANWLSNHVPLSVGWSLTLVIFLVFYLAIMGSLLLGPTIANNFSELNQII 104

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             A        +    I                 Q L+   +    T     +    +  
Sbjct: 105 PQALARLQTFLKGHDII----------------EQLLENFLQQDKATLLAQNMFSRIAGV 148

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
               +   + ++ +    F+F  +       +  L           +   +  V+R   +
Sbjct: 149 FSSLMGLVVGLLIIFANGFYFSVEPQVYINGVLHLFPKHRRKRASLVLSELGHVLRWWLV 208

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
           G        G++      L  +PS  AL  + A+++ +P   P+     +  +       
Sbjct: 209 GRIASMTVIGILTWGGLLLLDIPSAAALAFLAAVLSFVPNIGPLLSVVPAALVGWLQGPM 268

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           +   + L   I   +    + P +    I LP        +      G+LG+ +      
Sbjct: 269 SVLYVILLYTIIQTLESYVITPLIQRQVIMLPPALILTAQLAMGMAFGILGVLLATPFAV 328

Query: 337 LIAVIWKESIMA 348
           +I V+ +   + 
Sbjct: 329 VILVLIQMLYIE 340


>gi|15895697|ref|NP_349046.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15025448|gb|AAK80386.1|AE007743_8 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325509847|gb|ADZ21483.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 339

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 52/344 (15%), Positives = 112/344 (32%), Gaps = 20/344 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----FISKKEESST 60
           + + +   R   + ++    YF +     +L   I+ +    ++           +    
Sbjct: 7   LFHKESFKRGAFLVLLAAFFYFCRSIMNFILLTFIVTYLISSLHGFIVSNLRKYIKVREG 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A++  V ++ + ++         + E   +V++                        S
Sbjct: 67  LIALLLYVLIIAVIVLVFYNYVPVIVRETTNIVNQATNFYNTI--------------DTS 112

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +L T        +  L        G+ +I  FA  FG + L+  L+ +  +  +      
Sbjct: 113 DLGTLGKYIQPMITKLDIGSYTKQGLSYIIEFAKNFGKVSLNLFLAFVLSLFFVLEKGTI 172

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                +   S    ++  Y+                   +IAI   ++   A  + G P+
Sbjct: 173 KKFGKKFEKSKLSTMY-EYFVYYGNNFLNSFGKVIKAQILIAIVNAVLSSIALAIMGFPN 231

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG +  ++++IP    I     +S              + L   +   I    L P 
Sbjct: 232 LMTLGFMIFVLSLIPVAGVIISLVPLSFIAFNINGFTEVIYVILMVVVIHCIESYFLNPK 291

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+    KLP   TF  L+     MG  GL +G  L   +  +++
Sbjct: 292 LMSSKTKLPIFFTFIILIVSGDFMGTWGLLLGIPLFMFLLDVFE 335


>gi|260222993|emb|CBA33114.1| hypothetical protein Csp_B17420 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 314

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 11/304 (3%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
                   V+  V  +   +  LL +      E+  +  +  +         +     P 
Sbjct: 12  RIPRVVAVVLVEVLFLVALLSVLLLIVPILAKELPLMREQFPVLLDSLNEALK-----PL 66

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                      ++  +   +        +    +       G +      + I + +ALF
Sbjct: 67  LAQWGIKLNLDVASIKGFVMKYLNANVEDAFGSVLASVKLGGSVAFALIGNAILIPVALF 126

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           +   D      QL  +             R   +V+     G  ++ +           L
Sbjct: 127 YMLMDWSRFMGQLRQMVPPRLRGPTDSFLRESDEVLGQYLRGQLLVMVILAAAYSIGLAL 186

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL------IKGNIFNATCLFLWGAIEL 289
            G+   + +G+ T +   +P         ++++          G  +    + +   +  
Sbjct: 187 FGLDLALPIGIFTGLAIFVPYLGFGVGLVLALFAGLLEFSSSHGIGYPLVMVAVVYGLGQ 246

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L P LVG  I L  L   F L+   +  G +G+ +     A++ V  +      
Sbjct: 247 VVESFLLTPRLVGERIGLHPLAVIFALLAFGQLFGFVGVLVALPASAVLLVAIRRVRAGY 306

Query: 350 KENK 353
             ++
Sbjct: 307 LASR 310


>gi|167766810|ref|ZP_02438863.1| hypothetical protein CLOSS21_01318 [Clostridium sp. SS2/1]
 gi|317498800|ref|ZP_07957088.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 5_1_63FAA]
 gi|167711564|gb|EDS22143.1| hypothetical protein CLOSS21_01318 [Clostridium sp. SS2/1]
 gi|291560611|emb|CBL39411.1| sporulation integral membrane protein YtvI [butyrate-producing
           bacterium SSC/2]
 gi|316893935|gb|EFV16129.1| sporulation integral membrane protein YtvI [Lachnospiraceae
           bacterium 5_1_63FAA]
          Length = 381

 Score = 90.8 bits (224), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 97/324 (29%), Gaps = 6/324 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+   +    IM  +++    + L F+      F  P ++  II   + P+      K +
Sbjct: 1   MKRWEIYLDIIMELLVILAGALLLIFVLPKSIVFLWPFVAGWIISMMAHPVIEYLEKKVK 60

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP--VPRWLSDIP 114
               F + I   +V+   IV L F      L++   +          +   +        
Sbjct: 61  LPKKFGSAILIAAVITGIIVVLYFAVRGIALQVIGFIQDAPDIRHEIMRQGMIFQKKIEQ 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                   + K                 ++  D+    A           L ++ M+ A 
Sbjct: 121 FLSILPPSFGKQFDQWSGSIGELFKKAASSAGDYGVAHAGGVAKGVTSGLLGLVVMLFAA 180

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
           + F  +   +    +               +    V+ S  L    I I    +L   ++
Sbjct: 181 YMFSLEREKLIAWYEKCIPGFVKHKINVFMKNSVGVLVSYCLAQLKIMIVIIAILWIGFF 240

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           +AG+       V+  I+ + P     +         +         + L       ++ +
Sbjct: 241 IAGIGHSFIYSVLVGIVDIFPILGTGTVIIPWAIFKLITGDIKTAVILLIIYAICLVLKQ 300

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVG 318
            L+P ++G  + +  L T F +  
Sbjct: 301 VLQPKMMGDSMGISALTTIFLIYV 324


>gi|329935750|ref|ZP_08285555.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
 gi|329304841|gb|EGG48714.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
          Length = 341

 Score = 90.4 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 97/330 (29%), Gaps = 27/330 (8%)

Query: 9   QGIMRWMIMFIILVSL--------YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  W ++ +++  +           +    PVL AL+      P++   +       +
Sbjct: 9   RRLAAWCVVALLVAGVGWVVVELGRVFRPAVVPVLLALLGSALLAPLHRRLVG-VGVHRS 67

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A +  V+V+ +    L  +    +    ++V  V  A Q                   
Sbjct: 68  LSAFVTCVAVVAVVGGALFIVVSALVDNGAQIVDSVRRAAQSLTDRL------------- 114

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                               L                    +   + +  ++ +FFF RD
Sbjct: 115 ----GSSGTSVDSLSEEARKLAGRFGGSAVSGVVTGVGYISETVATAVLALLLVFFFLRD 170

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G      L  L  +      + ++R   + +     G T IA+ +  ++ +      VP 
Sbjct: 171 GDRAVSGLRGLSPYGSADTVEAVARRAFRAVEGFMRGTTFIALIDAALITAGLLGLRVPG 230

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            V LG +  + A IP     +S     +          A            I    L+P 
Sbjct: 231 AVGLGALVFVGAYIPYLGAFLSGAVAVLVAFADRGFAVAVWALGLIVAVQLIEGHVLQPV 290

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +    +++        L  G    G+LGL 
Sbjct: 291 IQSRTVRMHPAVVLVALAAGASVAGILGLL 320


>gi|308181879|ref|YP_003926007.1| permease [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308047370|gb|ADN99913.1| permease [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 348

 Score = 90.4 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 105/317 (33%), Gaps = 17/317 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 29  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A  +   + + +               + +   S  I +   L   GI
Sbjct: 89  DQLKVIPDMLAKAITNHPVLNKNIDKWV-----------NQAIHSSELIQNGKALLVTGI 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 138 KGLSEVGTGFTHVVMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              ++        +I     +++   + + G+PS + L +I  I+ ++P    +      
Sbjct: 193 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 252

Query: 267 IYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L    G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 253 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 312

Query: 326 LGLFIGPVLMALIAVIW 342
            GL IG  +++    I 
Sbjct: 313 WGLIIGIPIVSFFLDIL 329


>gi|171779728|ref|ZP_02920684.1| hypothetical protein STRINF_01565 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281830|gb|EDT47264.1| hypothetical protein STRINF_01565 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 317

 Score = 90.4 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 82/268 (30%), Gaps = 5/268 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+    L FL     P++ + I+ +   P+      +   + T    I    ++ L I
Sbjct: 43  ISFLFKPVLSFLAIIMLPLVISAILYYLIKPLVGLIERR-GVNRTASIFIVYAIIVALLI 101

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +         ++   V  +    +        L   P            L++     +
Sbjct: 102 WAVASFIPMIEGQLTSFVENLPAYVKSVNVESSKLLKSPWLANYQSELQDMLANISDKAV 161

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                   N ID+   FAS    + L   +S   +     +F RD   + + L       
Sbjct: 162 DYAESFSKNAIDWASSFASAIARVTLAIIMSPFILF----YFLRDSHKMKEGLIKALPTR 217

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 +I   + K +     G   +AI  G++    + + G+      G+I   + MIP
Sbjct: 218 MRRPTSRILGDINKQLAGYVQGQVTVAIVVGIMFTIFFNMIGLRYAATFGIIAGFLNMIP 277

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFL 283
                      + + I         + +
Sbjct: 278 YLGSFLAMVPVVIMGIVQGPIMLIKILV 305


>gi|148508155|gb|ABQ75947.1| predicted transporter [uncultured haloarchaeon]
          Length = 417

 Score = 90.4 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 55/356 (15%), Positives = 107/356 (30%), Gaps = 32/356 (8%)

Query: 1   MRETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M    ++   +  W+I   +    ++ +  F   ++  L   + + P+Y     +    S
Sbjct: 1   MSSRTIDRTQLAWWVIGFALAGALIFVVYSFIGTIVFGLFFYYATRPLYQRINRQIGPPS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A+   +  +  F++ L                      +        L D P     
Sbjct: 61  LAAAIALLLLALPAFLLVLYTAAIA-----------ANELIKLTNQTLVQLVDSPITSQQ 109

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
               T      Q                 +   A  F  +     + +  MI   F+  R
Sbjct: 110 LAQITDIERLIQIELTQLTPDQIRRVFSSLGS-AGNFLSVIGVGLVHLFVMIALAFYLLR 168

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-- 237
           D   +S+ + S          +     V     S F G  + A+  G +   AY +    
Sbjct: 169 DDHQLSRWVRSRFGDE-RGVLETYLDAVDNDFTSIFFGNILNAVITGTIGVLAYSILNIT 227

Query: 238 ------VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFL 283
                 +P+   LG++  + ++IP              L   +         F A+ + +
Sbjct: 228 APAGVAIPAAALLGLVAGVASLIPVVGMKLVYVPVAVYLAVTSYFTNPETLWFTASFVAV 287

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              I   I D  LRP++ G    L           G    G  G+F+ P+++ L+ 
Sbjct: 288 SLIIVDTIPDLVLRPYVSGRR--LHVGAVMVAYTFGPLLFGWYGVFLAPIILVLVV 341


>gi|299135051|ref|ZP_07028242.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
 gi|298590028|gb|EFI50232.1| protein of unknown function UPF0118 [Afipia sp. 1NLS2]
          Length = 376

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/353 (9%), Positives = 91/353 (25%), Gaps = 10/353 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L+  +        + S +++G     + +              ++  + + 
Sbjct: 23  ILAVSFAALLIFAWEFAATLFLIFSGVLLGVALTAMTNLLKKVMPGPHAVRLLVICLLLA 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL--------- 122
            +              +   L   +     +              +  + +         
Sbjct: 83  TMMAGIFTLGGSTIAQQATALSGTIKSQIVNLKTFLESYGFDASYLDLNTISPTSPRTST 142

Query: 123 -WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 + P     L       +G   I     +  +  +    +   ++     F    
Sbjct: 143 TPATTPALPNMQHNLPSAGALASGGGAIVSQTLKLILGTVGAVGNFFIVLFLGLAFAAQP 202

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               + L ++         + +   +   +    +   I      +V      + G+P  
Sbjct: 203 GVYRKGLIAMSPRAIRPQIETVIDRIGSTLERWLIAQMITMTVVFVVTWLGLLVVGIPGA 262

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             LGV   ++  IP    +    + +   I          F+       +    L P + 
Sbjct: 263 FILGVQAGLLTFIPTVGALLGGLIIVLASISSGWVAIGSAFVLLLGVHALESYILTPIIQ 322

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
              I +P    F   +      G+ GL +   +MA++ VI         +  E
Sbjct: 323 REAIDIPPATLFAFQILLGVVFGVWGLALALPVMAVVKVILVYLREDRPKPIE 375


>gi|56697039|ref|YP_167401.1| hypothetical protein SPO2176 [Ruegeria pomeroyi DSS-3]
 gi|56678776|gb|AAV95442.1| membrane protein, putative [Ruegeria pomeroyi DSS-3]
          Length = 370

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 31/314 (9%), Positives = 91/314 (28%), Gaps = 21/314 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
            L  L + F  + + ++   +   ++     + T++ + + +  L  +      +  +  
Sbjct: 51  FLIPLALAFLVYVLVTAISDRVHAATGAPEWLTTLAGIIVVLAGLFLMIAVIGGQATQFA 110

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +             ++ + G    + L    +                     +    
Sbjct: 111 RAMASYENAFDQAVTRVAALLGEQITAFLRDNLIGID------------------LSALT 152

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE-HLFPAYWKKISRIVPKVIR 212
                       + + + + + F   +   +  +L              ++   +   ++
Sbjct: 153 RSAMGSATSLLNTFLLVSLYVAFLLVERRVLGIKLLLAARDPQLGRDMSQVMEAISHNLQ 212

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LL 270
           S     T +++    +    + L G+       V+T  +  IP    I          L+
Sbjct: 213 SYLGVKTFVSLLTAGISYVVFTLLGLEFAETWAVLTFALNFIPSIGSIVAVIFPALVSLV 272

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
               I     +  +     F++   L P L+G  + +        L       GL+G F+
Sbjct: 273 QFDTITPFLVIVFFCGTVQFLIGNFLDPALLGRSLNMSTFMVILALTFWTAVWGLIGAFL 332

Query: 331 GPVLMALIAVIWKE 344
              L   + ++++ 
Sbjct: 333 SVPLTVCLLIVFRH 346


>gi|307297810|ref|ZP_07577616.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306917070|gb|EFN47452.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 363

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 103/335 (30%), Gaps = 17/335 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
              + ++L+        +  A I              K       L+++  ++++     
Sbjct: 12  FIAVFMTLFLFPTTSRVLGLAFIFSLIINTPAQFVSRK--IPRGALSIVTGIALLSFMFF 69

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            +  +    +  +K L                 L  +  G    +   K         + 
Sbjct: 70  LIYRVVPITISGVKGLS--------------LELDSLFNGGTFDKWLEKLPPFISEAIVD 115

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                     D               +   ++ +IIA F   R    I + +  L     
Sbjct: 116 IVESASQWLSDAAIMIGQYVASNITSWITGVVLLIIAGFVVARKTNMIQKSVPVLFPGCD 175

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                     + K  ++   G  IIA+  G ++     + G+P+ + LG++  I   +P 
Sbjct: 176 QDKVSSFFHSLYKDFQTYIGGQLIIALVVGTIIAIGSAILGIPNAIFLGLLAGITNFVPY 235

Query: 257 GAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              +  +   I L  +   ++      +   I   +    L P ++   +K+ +      
Sbjct: 236 LGVVVTSIPMIVLSFVSKGLWGVVGAIVLLVIANQMEIWFLSPKILSNRVKINWFIVLVS 295

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++G    +G+ G+     ++  I   W + I++ +
Sbjct: 296 IIGFGELLGVFGVVFAVPILIFIKRYWMDFILSER 330


>gi|311279560|ref|YP_003941791.1| hypothetical protein Entcl_2254 [Enterobacter cloacae SCF1]
 gi|308748755|gb|ADO48507.1| protein of unknown function UPF0118 [Enterobacter cloacae SCF1]
          Length = 344

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 99/337 (29%), Gaps = 22/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P     +  +             
Sbjct: 12  KIVIMLGMLVIILTGIRFAADIVVPFILALFIAVILNPAVQFMVRWRIPR---------- 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    + + F+    +L +  L + +    +        L      +           
Sbjct: 62  --VVAVTLLIAFIILLAVLLLASLGTSLNELGRTAPQYRSSLVVPLQNVEPMLQRLGIQV 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             + L    +       +       S          L+++FM++ +         +    
Sbjct: 120 SVEQLSKFIDPNAAMLLVTRFLTQLSNAMSSIFLLLLTVVFMLLEVPQLPTKLQQL---- 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I++  GLV      L  V      G++ 
Sbjct: 176 -----MSRPVEGMAAIQRAIDSVTHYLVLKTAISLVTGLVAWWMLALLDVRFAFIWGMVA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP    I      I  +L+ G I +A  +         +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSILAAIPPILQVLVFGGISDALLVMAGYLAINMLFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L  F  L+     +G +G+ +   L  ++ +  + 
Sbjct: 291 STLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEH 327


>gi|302531313|ref|ZP_07283655.1| hypothetical protein SSMG_07695 [Streptomyces sp. AA4]
 gi|302440208|gb|EFL12024.1| hypothetical protein SSMG_07695 [Streptomyces sp. AA4]
          Length = 406

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 91/313 (29%), Gaps = 14/313 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + I+    ++ ++  L +L     PV  AL++     P  S  +            I  V
Sbjct: 38  RFIVVIAALYAVVWLLGYLASVVVPVSIALLLSALLAPAVSRLVQ-IRFPRGLATAIVLV 96

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + +    L F+       + EL  ++  +                  W          
Sbjct: 97  AGLAVLGGLLTFVITQFSSGLPELQQQLTTSLNQIKD------------WLINGPLHLRQ 144

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I        N    +   A        +     +  +    FF   G  I   L
Sbjct: 145 EQIQDFINQAIGFLQNNQASLTTTALTTAGTVGEILTGFVLTLFVTIFFLAGGDGIWTFL 204

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                           R     + S       +A+ + + +G   W+ GVP  + L  + 
Sbjct: 205 VRGVPQRVRNRVNVAGRRGFASLVSYIRATAAVAVVDAVGIGIGLWIVGVPLVIPLATLV 264

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            + A IP     I+     +  L+   I  A  +       + +    L+P L+G  ++L
Sbjct: 265 FLGAFIPIIGALITGGVAVLIALVSKGIIGAVVVLAIVVGVMQLESHVLQPLLLGRAVRL 324

Query: 308 PFLPTFFGLVGGV 320
             L     +  G+
Sbjct: 325 HPLAVVLAIAIGL 337


>gi|225873136|ref|YP_002754595.1| hypothetical protein ACP_1510 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791352|gb|ACO31442.1| putative membrane protein [Acidobacterium capsulatum ATCC 51196]
          Length = 353

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 67/326 (20%), Positives = 127/326 (38%), Gaps = 13/326 (3%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           A ++ AL++   + P+      +   ++   ++   +  +   I+P   L          
Sbjct: 34  AAIVGALVLAVATQPLLRWLRKRLANATAAASIALFIVAIG-IILPGALLARILGQYAVA 92

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           +          G  +     +       +             + L+          F+  
Sbjct: 93  I----------GAALSNGAVEAAIRQALNHHPQLAALLQHGSRFLTWNNAAERAGTFLSA 142

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A       +     I+ M+  LFF YRD  +  + L S+           +   +   I
Sbjct: 143 HAINLLSNSIAALTQIVVMLFLLFFLYRDSRAAVRALYSVLPMQQKE-ALMLVTSMEGTI 201

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLL 270
           R+TFLG   +A  +G+V G  + +  V     LG++TA+ AM+P  GA + +  V++YL 
Sbjct: 202 RATFLGHLAVAAIQGIVAGIVFAILRVTGAAPLGMLTAVAAMVPSFGAYVVWLPVAVYLG 261

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + G +  A  L + GA+ +  +D  L P LVG  ++         L+GG+   G+ GL +
Sbjct: 262 LAGRLIPAILLIVIGALIISTLDNLLYPLLVGAQLRQHPAIILLALLGGIWMFGIAGLVL 321

Query: 331 GPVLMALIAVIWKESIMAIKENKEKI 356
           GPVL ++   + +      +   E I
Sbjct: 322 GPVLFSVAMALLRIWHERSQAGVEAI 347


>gi|229029652|ref|ZP_04185728.1| UPF0118 membrane protein [Bacillus cereus AH1271]
 gi|228731656|gb|EEL82562.1| UPF0118 membrane protein [Bacillus cereus AH1271]
          Length = 337

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 53/342 (15%), Positives = 113/342 (33%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVTFIGTTLYKYLPVLTIQISQLIHQFRLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSSLKVFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  I   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITIIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+     +G+ GL IG  +   +  +  
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLN 328


>gi|326335034|ref|ZP_08201234.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
 gi|325692839|gb|EGD34778.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Capnocytophaga
           sp. oral taxon 338 str. F0234]
          Length = 361

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 56/351 (15%), Positives = 119/351 (33%), Gaps = 22/351 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   + +F++ + +Y L+     V+ A ++     PI      K +  +T+  + +  
Sbjct: 15  KAVGMIVGVFLLCLGIYKLQNVIIYVILASVLALIGRPIIQFLKKKLKFKNTWATITSIG 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +MC FI  +       + + K L S                  +   +           
Sbjct: 75  LIMCFFIGLMSLFIPMLITQGKNLASI-------------DFQALNDNILLFLDNILLSL 121

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L+       +   +  +    + F  I  +  + +  +    FFF +DG +IS   
Sbjct: 122 GFTKLESNITNIPELLNMQDVSSVVNGFIEIISNLGMGLFSVFFIAFFFMKDGTAISNSF 181

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL +       KK    +  ++   F+G+ +      ++L     + GV   V +  + 
Sbjct: 182 LSLADPKRLPKIKKTLEEIKNLLSRYFVGLFLQLTVIFVLLTIVLLIFGVGDAVIIAFLC 241

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNI---------FNATCLFLWGAIELFIVDKTLRPF 299
           A++ +IP   PI    V   L I   +              + +   I   I +   +P 
Sbjct: 242 ALLNLIPYLGPIIGAVVISVLTISNFMDADVQSVILPKTIYVLIGFLITQLIDNVFSQPI 301

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    +K   L  F   +      G++G+ +      ++ VI K      K
Sbjct: 302 IFSNSVKSNPLEIFLITLISGTLFGIVGMVVAIPAYTVLKVILKAVFPNNK 352


>gi|313126137|ref|YP_004036407.1| permease [Halogeometricum borinquense DSM 11551]
 gi|312292502|gb|ADQ66962.1| predicted permease [Halogeometricum borinquense DSM 11551]
          Length = 418

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/361 (12%), Positives = 110/361 (30%), Gaps = 31/361 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + +   + + +     Y    F    +  + I +++ PIY     ++    +  A 
Sbjct: 6   MDRSRMVWWAIGLVLAAALAYVFYSFVGTFVFGIFIYYSTRPIYRRI-KRRVRPPSLAAA 64

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A  ++    +  + +     + E+  L +               L+ +        L  
Sbjct: 65  VALFALALPALALIAYALAIVVNELVRLTNNGFFDLSRYPITSDQLARLTDPNTILSLEL 124

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L+  +           +  +  I   A     + +      + + +A +    D    
Sbjct: 125 SSLTESE----------LSQILSSIGSAADTLAFLGVGGVHLFVMIALAFYLLRDDHRFA 174

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG------- 237
                +  +       +     V +  ++ F G  + A+  G +   AY +         
Sbjct: 175 RWVRMNFADD--RGVMEAYCTAVDRDFKNIFFGNILNAVLTGTIGVIAYTVLNMVGPDGV 232

Query: 238 -VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIE 288
            +P+   +G++  + ++IP              L   +         F    + +   I 
Sbjct: 233 YIPAAALVGLLAGVASLIPVVGMKLVYIPVAIYLAGVSYFSNPGAFWFVIAFIAVSFVIV 292

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I D  LRP++ G    L           G    G  G+F  P+++ L+    K  +  
Sbjct: 293 DTIPDLVLRPYVSGRT--LHVGAVMIAYTFGPLLFGWYGIFFAPMILVLVVNFAKYVLPE 350

Query: 349 I 349
           +
Sbjct: 351 L 351


>gi|315639853|ref|ZP_07894985.1| permease [Enterococcus italicus DSM 15952]
 gi|315484387|gb|EFU74851.1| permease [Enterococcus italicus DSM 15952]
          Length = 351

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/343 (13%), Positives = 100/343 (29%), Gaps = 17/343 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E  L    + R +++ +++  +Y L+     +    I  F ++            SST L
Sbjct: 5   EAFLENIKLRRIVVLLVLIGGIYILRSMLTLLFLTFIFTFLAYKSVKKLKKLIPISSTIL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V     ++    + +       + +   +V  +V   QH              +     
Sbjct: 65  VVAIYGLIVLGMYLVVTKYVPIVIDQSIMMVDSLVRFYQHNPKNSDSFFRAAHEVIDQFN 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             ++L +  ++ +          I  +  F   F  +  +        +     F     
Sbjct: 125 LLEYLKNRLTIVLDYIQSFGKVTIAAMMAFILSFFFLIEEKRTFEFSRLFLHGEFAWFFQ 184

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +                                    IA+   ++   A          
Sbjct: 185 DLHYFFVKF----------------SNTFGVVIEAQLFIALINTVLTCLALVAMNFTQIP 228

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L V+  I+++IP    I     +SI     G + +   + L       +    L P L+
Sbjct: 229 SLVVMIFILSLIPVAGVIISTIPLSIIAYSTGGMNDVVIILLVILAIHLLESYFLNPKLM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               ++P   TF  L+      G+ GL +G  +   I  + K 
Sbjct: 289 SSKTEIPIFFTFVILLFSEHYFGVWGLVMGIPVFTFIFDLLKI 331


>gi|28379647|ref|NP_786539.1| transport protein [Lactobacillus plantarum WCFS1]
 gi|28272487|emb|CAD65411.1| transport protein [Lactobacillus plantarum WCFS1]
          Length = 348

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 47/317 (14%), Positives = 105/317 (33%), Gaps = 17/317 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           ++GF   VL   I  +    +      +         ++  V V+ LFI  L +     +
Sbjct: 29  MRGFATVVLLTTIFAYLGIKLSRWLNLRTHLPYWIAVIVVYVGVIALFIGALSYAAPTLV 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++K +   +  A  +   + + +               + +   S  I +   L   GI
Sbjct: 89  DQLKVIPDMLAKAITNHPVLNKNIDKWV-----------NQAIHSSELIQNGKALLVTGI 137

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +    + F  + +   LS IF +            +  +      +++      ++  
Sbjct: 138 KGLSEVGTGFTHVLMAIFLSFIFAVSRGRMMVFGRQFLQSKFKKFFTNVY-----YLTHK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
              ++        +I     +++   + + G+PS + L +I  I+ ++P    +      
Sbjct: 193 FVMILGRIIETQLVICTINTILMTIGFMIIGMPSIMVLSIIVFILGLVPVAGVLISMIPL 252

Query: 267 IYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L    G +     + +   +        L P L+     LP   TF  L+     +G 
Sbjct: 253 TLLGFASGGLIRVVWIIVLVILIHAFESYFLHPRLMADRTDLPVFVTFITLIIMESLLGA 312

Query: 326 LGLFIGPVLMALIAVIW 342
            GL IG  +++    I 
Sbjct: 313 WGLIIGIPIVSFFLDIL 329


>gi|87301855|ref|ZP_01084689.1| hypothetical protein WH5701_00980 [Synechococcus sp. WH 5701]
 gi|87283423|gb|EAQ75378.1| hypothetical protein WH5701_00980 [Synechococcus sp. WH 5701]
          Length = 379

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 90/296 (30%), Gaps = 13/296 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  L+A +I F           +          +     + + ++  L++    +
Sbjct: 34  LAPFPALFLTAALIAFLLDLPSRWLTGR-GLPRPLALALVLGLGLLVLVLVALWIIPLLV 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++ +         +                +    S   +          T   
Sbjct: 93  EQLADLLTALPGWFVEAETLLNQAQAWAVEHGLPADFGDLSSALLTR--------STQYA 144

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +         L   ++ + +I+   F    G SIS+ L       +      +   
Sbjct: 145 SQLSQKLLGLLGATLTLTINSVIVIVLAIFLLLGGESISRGLARWLPASWREM---VLGT 201

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           V +  R  F G  I+A+         + L G+P  V   V      +IP  +  +   + 
Sbjct: 202 VNRTFRGYFGGQVILALILSAAQIVVFTLLGIPYGVLFAVAIGFTTLIPYASAFT-IVLV 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             LL   +      +         +VD+ ++P L+G  + L        L  G R 
Sbjct: 261 SLLLALEDPTTGLEVLAVAIAVGQVVDQVIQPRLMGKIVGLQPAWLLLSLPVGARI 316


>gi|229109412|ref|ZP_04239007.1| UPF0118 membrane protein [Bacillus cereus Rock1-15]
 gi|228674038|gb|EEL29287.1| UPF0118 membrane protein [Bacillus cereus Rock1-15]
          Length = 337

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 114/343 (33%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|294651524|ref|ZP_06728834.1| hypothetical protein HMP0015_3043 [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822588|gb|EFF81481.1| hypothetical protein HMP0015_3043 [Acinetobacter haemolyticus ATCC
           19194]
          Length = 358

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/340 (13%), Positives = 108/340 (31%), Gaps = 18/340 (5%)

Query: 9   QGIMRWMIMFIIL-VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           Q ++  ++  I+    L   +GF  P+L A I  +    +    +      ST       
Sbjct: 14  QTLVYILLFLILFGWLLKIGQGFLLPILVATIAMYILITLSHWLVKFPVLKST-PEWFRR 72

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+  FIV ++ L    +   +++++K+ +   +   V   ++   G   + +      
Sbjct: 73  ILVLISFIVVMVQLISLVITTGQKILAKMPIYEANIEQVFLHVNAYLGWSDSPDWQIFRE 132

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                +               +    +     F       + +I+   F   +     ++
Sbjct: 133 MLMSQI--------------NLQSLITSTLTSFSALTGMFVVIIVYALFLLNERDQFVKK 178

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L            + +   + K I    +  T+I +    +     W  GV   +   +I
Sbjct: 179 LMIAFPDGKTEQTRLLIADINKKISEYLVVKTLINLILATICFVILWACGVEYALFWALI 238

Query: 248 TAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             +   IP    +      +   L   G++     + +  A+    V   L P ++G  I
Sbjct: 239 IGLFNYIPYVGSLFGVIFPVLMTLAQTGSLKLTILVAILLAVAQMFVGNFLEPRMIGKQI 298

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            L        L       G+ G  +   L ++  ++ +  
Sbjct: 299 NLSPFVVLLSLSLWSSLWGIAGAILAIPLTSIFVIVLEAF 338


>gi|126699652|ref|YP_001088549.1| hypothetical protein CD2035 [Clostridium difficile 630]
 gi|255307040|ref|ZP_05351211.1| hypothetical protein CdifA_10657 [Clostridium difficile ATCC 43255]
 gi|115251089|emb|CAJ68920.1| putative sporulation integral membrane protein [Clostridium
           difficile]
          Length = 363

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/332 (11%), Positives = 105/332 (31%), Gaps = 3/332 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +I+ ++++   +      P + A +I             K       +A I+      
Sbjct: 22  LVVILGLLMLLGKYAFSVLLPFVFAFLIASLLNKPVLYISEKLLIKRGIVATISVFLFFL 81

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  + +  +  Y +  +KE+   +    +  +            +++       +   ++
Sbjct: 82  IAGIIVSVIGTYLIYGIKEIFHFLPTMFEELVIPLTETVIKEVELFSGSFNFSFIELIEA 141

Query: 133 ---LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              + +   +    +  + I    +          +  I  I+A  F   D  +I + + 
Sbjct: 142 NMPVLMNEMSVFIVSLSNNIVSGITDIVSSVPLLFMKTIITIVASIFIAIDYPTIKRFIV 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       +        I        +I       L   + +  +     + +  A
Sbjct: 202 LQIPKNKSYLLAEAKAFTIDTIIKCGFSYLLIFAITFSELYVGFVIINISYAGIIALFIA 261

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ ++P     S       + +    ++         I + I+   + P LVG  ++L  
Sbjct: 262 LLDILPVLGTGSILIPWCIISLFLGDYSMALGIALLYIVITIIRNIIEPKLVGKHMELHP 321

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +     ++ G+   G +GLF  P+L+A +  +
Sbjct: 322 VLALASMLTGLHFFGFIGLFGIPLLIAFLKKL 353


>gi|238853025|ref|ZP_04643420.1| transport protein [Lactobacillus gasseri 202-4]
 gi|238834363|gb|EEQ26605.1| transport protein [Lactobacillus gasseri 202-4]
          Length = 349

 Score = 90.4 bits (223), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 48/342 (14%), Positives = 102/342 (29%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTF 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     S  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                    
Sbjct: 66  IVVLAYLLVIAIIYFAITIYMPILIKQIVKMSHSLMEFYQS-----------------DN 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +          +     T    +G+  +    +  G + + + +S+I             
Sbjct: 109 MDWLTQYLNHYISDSEITTQAKHGVTILVHALTNVGTLTIAFFMSLIMSFFYTIELDSMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 L+S                              IA+    +      +  +P  
Sbjct: 169 EFSHTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +AL ++  I+++IP    I     +S      G I     +F+   I   I    L P  
Sbjct: 229 IALCLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYILNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 289 MSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|229821094|ref|YP_002882620.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
 gi|229567007|gb|ACQ80858.1| protein of unknown function UPF0118 [Beutenbergia cavernae DSM
           12333]
          Length = 392

 Score = 90.0 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 90/322 (27%), Gaps = 13/322 (4%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
              L++     P+   +      +   +  + T       ++ L  L             
Sbjct: 64  FIGLVLTAVLRPLAQRYRRVAHPALAAVLALLTGVAALAAVLALAILGIS---------- 113

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                      V   L  +   +    L            +             +   A+
Sbjct: 114 --SEWPAVVQRVGDGLRGLAALLRDGGLPVTITDADVERWVSGAVGWLRTNSATLAGAAA 171

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
                FL   + +   + +   F   G  +               W+    +  +     
Sbjct: 172 TRVGTFLVTLMVVALGVFSAVCFLIGGDRMFSWFVGQLPPRVRTAWRTAGDVAWRSFGGY 231

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKG 273
             G  + A   G++      + GVP  + L V+  + A +P    P +     +  L   
Sbjct: 232 TRGAVLTAACVGVLGYVVLLVLGVPLAIPLAVLIFVGAFVPLIGAPAAMVVAMLVALAAN 291

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
            + NA  + +  A+   +    L P ++G  ++L       G+  G    GL+G  +   
Sbjct: 292 GLGNAVAVGIGIALVGQVEGHVLHPLVMGKHVRLHPFVVGIGVSAGTVLGGLVGAIVAIP 351

Query: 334 LMALIAVIWKESIMAIKENKEK 355
           ++ +   ++       + +  +
Sbjct: 352 VLGVGWAVFSALRPPPEPDDAE 373


>gi|223986476|ref|ZP_03636477.1| hypothetical protein HOLDEFILI_03792 [Holdemania filiformis DSM
           12042]
 gi|223961538|gb|EEF66049.1| hypothetical protein HOLDEFILI_03792 [Holdemania filiformis DSM
           12042]
          Length = 278

 Score = 90.0 bits (222), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 77/245 (31%)

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           +        +     L         + T         +    S   +   ++ +  +  +
Sbjct: 8   EWDLDTAKLQAALDQLGLSADKIFQTATNWVGGTGMTVINNISAITVGLSNWVMGFMLSL 67

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
             L    +    + + + +L             R   +   S   G  + A    ++   
Sbjct: 68  YLLSSKEKFIRQLKKLIGALLPLSAANRVLAWGRKTNQTFSSFISGQLLEACILAMLYYV 127

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
           +  L  +P  + +  +  + +++P    +   A    L+   N + +    ++  I    
Sbjct: 128 SMTLFKMPYAMLISTVIGVTSIVPMFGAMLGMAFGCVLIFAINPWMSLFFMVYFQIVQQF 187

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            +  + P +VG  + LP +     +V     +GL G+ I     A++  +  E +     
Sbjct: 188 ENNLIYPRVVGNSVGLPGIWVLLSIVVFGGLLGLFGMLIAVPATAVLYTLLGEFVNGRMR 247

Query: 352 NKEKI 356
            K +I
Sbjct: 248 KKGQI 252


>gi|282857112|ref|ZP_06266358.1| conserved domain protein [Pyramidobacter piscolens W5455]
 gi|282585047|gb|EFB90369.1| conserved domain protein [Pyramidobacter piscolens W5455]
          Length = 353

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/341 (12%), Positives = 91/341 (26%), Gaps = 36/341 (10%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +  + V L   +  F P++ A II +   P        K         I T  ++
Sbjct: 11  VAVLTVIAVGVVLQAAQNVFLPLVIAWIISYMMAPGVRFMTRLKVP-----VEITTFLLL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +        +          K +   +  + +    S                    
Sbjct: 66  ALLLYITSQAGSFLSQLFAGSADKFMNYYEQLVAIWNQFSAKYN---------------- 109

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I +      +    +  +        +      + +I+ L F       +  ++   
Sbjct: 110 ---ITATYLRGVDWGGALRSYIIALSGSIVTILSKTVMVIVFLMFILFGSPYVEYKMRKA 166

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      I   +   I      MT+I+   G+++       GV      GV+   +
Sbjct: 167 FPQKSAQVM-NILDSISTQIGRFLSVMTLISGATGILIWLGLSWIGVDFAPTWGVLAFFL 225

Query: 252 AMIPGGAPISFTAVSIYL-----------LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             IP    I  +   I +            + G                  +   + P +
Sbjct: 226 NFIPTVGSIVASVPPILISIVQFYPAAASAVFGIPPQVFMTIGVILAVQVTIGNIITPKV 285

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +G  + L  +     L+      G+ G  +   +  +I +I
Sbjct: 286 MGDSMNLSPVMILVSLLLWGWLWGVAGALLSMPIAGIIKII 326


>gi|254671723|emb|CBA09523.1| permease [Neisseria meningitidis alpha153]
          Length = 207

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 2/195 (1%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
           G   +    +++ + + L++F  D    S  +  L    F   + +I+  + +V+     
Sbjct: 4   GGNIVSSIGNLLLLPLLLYYFLLDWQRWSCGIAKLVPRRFAGAYTRITGNLNEVLGEFLR 63

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--IKGN 274
           G  ++ +  GLV G    L G+ S  A+G++  I+  +P     +   ++        G+
Sbjct: 64  GQLLVMLIMGLVYGLGLVLVGLDSGFAIGMVAGILVFVPYLGAFTGLLLATVAALLQFGS 123

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                 ++   A+  F+    + P +VG  I L      F L+   + MG +G+  G  L
Sbjct: 124 WNGILSVWAVFAVGQFLESFFITPKIVGDRIGLSPFWVIFSLMAFGQLMGFVGMLAGLPL 183

Query: 335 MALIAVIWKESIMAI 349
            A+  V+ +E +   
Sbjct: 184 AAVTLVLLREGVQKY 198


>gi|254457126|ref|ZP_05070554.1| acid membrane antigen A [Campylobacterales bacterium GD 1]
 gi|207085918|gb|EDZ63202.1| acid membrane antigen A [Campylobacterales bacterium GD 1]
          Length = 349

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 118/354 (33%), Gaps = 23/354 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           PQ  +  +    +         F   +  A ++  ++  I        + S    A+I++
Sbjct: 3   PQYFVAILFATSLYWMYLLYAPFLLTITIAALLAVSTSNIQELLSKLFK-SRFSAALISS 61

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  LF  PL +      +++  +  +V +  +  I                      +
Sbjct: 62  FLMAILFFAPLGYFLATLTIKLNSIDPQVFVGIEVYIREL-----------IKNPPEYLM 110

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                     +                  G     +  +   +II  FF   +G +I + 
Sbjct: 111 FIKPYAVDALKDLNVNALTSKAISLTGTIGSFSAGFLKNAFLIIIFYFFAQYNGTNIIEF 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  + +         +++ +  V+   F  + + A+ EG++ G A    G    +   + 
Sbjct: 171 LKRVVQMSVEETTT-LAKELSSVMSVVFYSIIVTAMLEGVLFGVAVSFMGYNGLLFGIMY 229

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG---- 302
                +   G  + +    +Y    G+  +A  + L+  I + I+ D  ++P ++     
Sbjct: 230 GFASLIPVVGGVLMWLPFMLYEFSIGDSSSAIFIALYSVIVISIIADTFVKPLIIKEINN 289

Query: 303 -----GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                   ++  L  FF ++ G+ T G  G+ +GP + A    I K      KE
Sbjct: 290 RLLKEDDTRINELVIFFAIIAGLATFGFWGMILGPAITAFFLTILKLFEARTKE 343


>gi|313125203|ref|YP_004035467.1| permease [Halogeometricum borinquense DSM 11551]
 gi|312291568|gb|ADQ66028.1| predicted permease [Halogeometricum borinquense DSM 11551]
          Length = 396

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 56/361 (15%), Positives = 114/361 (31%), Gaps = 27/361 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKG-FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           ++    + W++   I V L F+   F    +  L + + + P+YS    +  + S   AV
Sbjct: 9   IDRSRAIWWVLGVAIFVVLAFVADAFLGTFMLGLFLYYATRPVYSRIRGRIGQPSIGAAV 68

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              V  + + ++ + +     + E+   V +              L    G   + +  +
Sbjct: 69  ALLVLSLPV-VLLVNYTVLIAVQELSAFVGQNQQGI------LAALKPYLGSFESLQAPS 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L+              T  ++ +    +      LD    +       F+  RD   +
Sbjct: 122 ELLATLLENPSELVDMTDTATVEAVLSSIAGTASFILDAAFQLFIAFAFAFYLLRDDRRL 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG------- 237
           S                     V + +R+ + G  + A    ++   +Y           
Sbjct: 182 SAWTRENLSG-HGGVMDAYMTAVDRDLRTIYFGNILNAFAIAVIAAVSYNAINLFAPPSL 240

Query: 238 -VPSHVALGVITAIMAMIPGGAPISFTAVSIYLL--------IKGNIFNATCLFLWGAIE 288
            +PS   LG +T   ++IP             LL                    +   + 
Sbjct: 241 WIPSPTLLGALTGAASLIPVVGMKIVYVPVTVLLAVEAALTAPDAFWVALAYGAVSLVVV 300

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             I D  LRP++ G    L      F  + G    G  GLF+GP+L+ +     +  +  
Sbjct: 301 DTIPDFLLRPYVSGR--NLHTGTVMFAYIIGPALFGWYGLFLGPLLLVIAVHFVRIVLPE 358

Query: 349 I 349
           +
Sbjct: 359 L 359


>gi|300362643|ref|ZP_07058819.1| integral membrane protein [Lactobacillus gasseri JV-V03]
 gi|300353634|gb|EFJ69506.1| integral membrane protein [Lactobacillus gasseri JV-V03]
          Length = 349

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 103/342 (30%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTF 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     S  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                    
Sbjct: 66  IVVLAYLLVIAIIYFAITIYVPILIKQIVKMSHSLMKFYQS-----------------DN 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +          +     T    +G+  +    +  G + + + +S+I             
Sbjct: 109 MDWLTQYLNHYISDSEITTQAKHGVTILVHALTNVGTLTIAFFMSLIMSFFYTIELDSMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 L+S                              IA+    +      +  +P  
Sbjct: 169 EFSYTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I+++IP    I     +S      G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYILNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 289 MSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|56479402|ref|YP_160991.1| hypothetical protein ebA6963 [Aromatoleum aromaticum EbN1]
 gi|56315445|emb|CAI10090.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
          Length = 393

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 101/350 (28%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   +++ +  + ++ +      V + +++G     +     +    S      +  V+
Sbjct: 45  IVSMVLLIVVFGLLVWTVADVLLLVFAGVLVGVFLRGLGDGVSALTGLSGRVSFGVVLVT 104

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  + IV    L      ++ +L   + LA +  +                 L       
Sbjct: 105 LAAVLIVGGALLGNEMASQLDQLGPSLHLAWEKMLNGVYGYEWGRILFSERNLSAMLPED 164

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                                        + +     ++  +    +           L 
Sbjct: 165 -----------------GTWLTRLGDAFSMTIGAIAGLLIAVFIGVYGAATPTVYRHGLL 207

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L      +  +++   V   +R   +G        GL +    WL  +   +ALG+I  
Sbjct: 208 LLAPAHARSRAREVLDTVTTTMRWWLIGTFARMAVVGLSVTVGLWLLDIQLALALGLIAF 267

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I+  +P   P+     ++ + I     +A  + L         +  + P +    + LP 
Sbjct: 268 ILDFVPYIGPVLAALPALLVAIATGPADAFYVLLLYLAVQMAENYVVTPLIDQYSVHLPP 327

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             T    V     +G LG+     L A+  V+ +   +         +  
Sbjct: 328 ALTISAQVLLGALLGALGVVFATPLTAIALVLVRMLYVEEDAESPTGTQE 377


>gi|206977447|ref|ZP_03238342.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|206744297|gb|EDZ55709.1| putative membrane protein [Bacillus cereus H3081.97]
          Length = 337

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 114/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYGEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|241203730|ref|YP_002974826.1| hypothetical protein Rleg_0992 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240857620|gb|ACS55287.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 396

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/350 (11%), Positives = 104/350 (29%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     P+  A+++G            +        A I + S
Sbjct: 62  WAIIGIFGILFLAAVYLMSLILIPITLAVVVGMILGMAAEKLS-RMGVPRLANAFILSSS 120

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  + +  L    M    E  +         +P    +  +       E  +  +  
Sbjct: 121 VALVIFLLINSLADPLMTLANEGPAFAERTINRVMPYLERIRWLHITPATFESGSMSIGA 180

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + T+    + +    F  +       +      +  F      ++    
Sbjct: 181 LLENTGNVLHVVTTSLTPALVQGLIFFAALLFFLAGRVNLRKTIIMTFRTRTQRLAA--- 237

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I +G G+V+    +  G+ + V  G    
Sbjct: 238 -----------IRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYAGGLSAPVLWGFFAF 286

Query: 250 IMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP       T       +L    +               +++  + P ++G  +++
Sbjct: 287 LSSFIPYLGITLMTLAVAVAGILTHDGLLIGLMPAAAFFTVHLLMENLIFPAVMGRRLEI 346

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  I  E ++  K   +   
Sbjct: 347 NPFVVFLAILFWTWMWGAVGAMLALPLSLIVMTIIDELLIEEKPQPQLPK 396


>gi|87198930|ref|YP_496187.1| hypothetical protein Saro_0908 [Novosphingobium aromaticivorans DSM
           12444]
 gi|87134611|gb|ABD25353.1| protein of unknown function UPF0118 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 355

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/324 (10%), Positives = 85/324 (26%), Gaps = 21/324 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              ++  ++                          +  +  +   +  + F       + 
Sbjct: 47  IMVIIGGIVFAAMIDGGQRLIARVAPFLPRWLRITLVLLGALGFLVWLVTFAGGQIAAQA 106

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            E  + +    +      +        +    + ++ L                      
Sbjct: 107 AEFPAVIQTQLERLALWAQSHGITMQNLDLQAIASQVLGS-------------------- 146

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +R          +   + I   +F  +     + +  +      A+++  +  + K
Sbjct: 147 VGQVTRALGGIFGGFTTAFLIFILAIYFVLEPDLYRRGVAWMLPERSRAHFEGTAVRMGK 206

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +R    G  I    EG          GVP    LG++T ++A +P        A+ I +
Sbjct: 207 SLRMLLFGRLIGMAVEGFATWGLLAWWGVPMAALLGLLTGLLAFLPNIGAPISGALMIMV 266

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              G             I   +    + P +      L         +      G+LGL 
Sbjct: 267 GFSGGTEMGLFCIAVYVIVQTVDGNIIVPMVAKRTADLAPALVLGAQLMFGLLFGILGLM 326

Query: 330 IGPVLMALIAVIWKESIMAIKENK 353
           +   ++A++ +  +        N+
Sbjct: 327 LADPIIAMLKIALERQAERNDANR 350


>gi|303238314|ref|ZP_07324849.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
 gi|302594018|gb|EFL63731.1| protein of unknown function UPF0118 [Acetivibrio cellulolyticus
           CD2]
          Length = 355

 Score = 90.0 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 54/344 (15%), Positives = 119/344 (34%), Gaps = 19/344 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESST 60
            L  +  +R MI+ I+   LY ++      L   I+ +  + I S   SK     +  + 
Sbjct: 7   FLKKKSTIRIMILAILFFLLYLMRDMMNLFLLTFIMAYLMYRIQSFISSKISKFVKVGNR 66

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + +   +  + L I+ +       + E K+++ +V+                       
Sbjct: 67  VVTICLYMIFVFLAILGIYNFLPLVIQESKDVIDQVISYYTQNEAAIEK----------- 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             +        ++  L  +     G+D + + AS  G +  D  ++II  +  L      
Sbjct: 116 --YLLSALKKFNIDNLDISKYVGKGLDILAKSASSIGKLSFDMFIAIILSLFFLLE-RTR 172

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
               + +  +    +F    +   +              +IA+   ++      + G   
Sbjct: 173 IARFTLKFKTSSISVFYNEIEYFGKKFINSFGKVIEAQFLIALINSILSTIVLSILGFDK 232

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + LG++  ++ +IP    I     +S+     G +     ++   A+   +    L P 
Sbjct: 233 VIGLGIMIFVLGLIPVAGVIISLVPLSLIAFNTGGVKTVLFVWGMIAVLHALEAYVLNPK 292

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+    +LP   TF  L+ G     + GL IG  +   I  + +
Sbjct: 293 LMSSKTELPVFYTFIILLIGEHFFKVWGLIIGIPVFMFILDLVE 336


>gi|242399644|ref|YP_002995069.1| Predicted permease [Thermococcus sibiricus MM 739]
 gi|242266038|gb|ACS90720.1| Predicted permease [Thermococcus sibiricus MM 739]
          Length = 328

 Score = 90.0 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 54/348 (15%), Positives = 132/348 (37%), Gaps = 29/348 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + +   + + I  ++   +    + +  A I+ +   P++    ++ +   + L +
Sbjct: 1   MKAEEIVWGTVTLIIAYLAWKTIAPLLSAIFFAAILAYAVLPLHKRLTTRIDNKKSALIL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              +  +       L L                          + L         + ++ 
Sbjct: 61  TLLLIGLSSIFTVELVLI------------------------IKNLIASFYEDIMNFIYW 96

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                           L +     +  +   +      Y L ++  +   + F  +   I
Sbjct: 97  SLTIELPFGIHDVLQKLYSQSTPKLAEYVQSYAFSIPKYLLQLVIFLAMFYTFLVNSDRI 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
            +Q+  L         +K+ +     +++      ++ I +G ++   +W  G+   P+ 
Sbjct: 157 KKQIYLLIPRGHEDLGEKLLKRADVTLQALIRAWLLLNIAKGALMTLGFWGFGITDIPTA 216

Query: 242 VALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +  G++T + + IP     + +   +I+LL +G++  A  + ++GA+ +  + D T+RP 
Sbjct: 217 LLAGLLTMLFSFIPLFEGWMIWVVAAIFLLKQGDVLKAIAISIYGAVLVSPLPDFTIRPK 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           LV    KL  +    G++GGV   G+ GL IGP+++ L++ + KE   
Sbjct: 277 LVAKEAKLDEIMVLIGMIGGVWAFGVKGLIIGPIILNLVSALLKEWKR 324


>gi|322514984|ref|ZP_08067996.1| PerM family permease [Actinobacillus ureae ATCC 25976]
 gi|322119037|gb|EFX91201.1| PerM family permease [Actinobacillus ureae ATCC 25976]
          Length = 349

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 101/326 (30%), Gaps = 19/326 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 P L +L I     PI      ++         IA   ++ L ++  LFL     
Sbjct: 28  AAEIVVPFLLSLFIAIICSPIIKFMTIRRIP-----LGIAISLLLGLIVLVFLFLTGMVN 82

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             ++E  + +           + +  +                   + I  E  L     
Sbjct: 83  NAIQEFTASIPQYKLLLTARLQTIFALVNEYQLP------------ISIGQEDILSKFDP 130

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL-DSLGEHLFPAYWKKISR 205
             +    SR  + F     +I  + + + F   +      +L  +L      +  K    
Sbjct: 131 SAVMNLVSRLLLGFSGVLSNIFVLFLVVIFMLLESPMAKYKLALALSPDNDLSNEKYYID 190

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTA 264
            V K +       T+++   GL +     +  V   V  GV+  ++  IP     ++   
Sbjct: 191 QVLKGVIGYLGIKTVVSALTGLSVWILLMILNVQYAVLWGVLAFLLNYIPNIGSFLAGIP 250

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +  L+         +         +    L P ++G  + L  L  F  L+     +G
Sbjct: 251 IVLQALLLNGFSVGLAVLAGIVGVNMLFGNVLEPKMMGKRLGLSTLVVFLSLLFWGWLLG 310

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIK 350
            +G+ +   L   + +  + +  + +
Sbjct: 311 TVGMLLSVPLTMALKIALESNPSSRR 336


>gi|126649757|ref|ZP_01721993.1| hypothetical protein BB14905_16205 [Bacillus sp. B14905]
 gi|126593476|gb|EAZ87421.1| hypothetical protein BB14905_16205 [Bacillus sp. B14905]
          Length = 323

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 89/298 (29%)

Query: 46  PIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
           PI      +  +    +  I  +  + + ++    + Y    +    +  +         
Sbjct: 15  PIIVRMSKRFRKKRKIVVSIFFLFFLSISLLLCTLIIYVSWKQFSSFIIDIPDYLNQLSA 74

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +   +                      +     +  K           S           
Sbjct: 75  LWIQMQSKLSNHTYHLPVELVSQIQSMIARALASTEKFAHSLTNIDVWSALLTYIPTRLF 134

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            I    I L+    +  +I+Q++       +      I   V   +        ++ +G 
Sbjct: 135 DIFVYWIVLYMLLLELPTINQKILMPVPFHYHQKIVFIGERVKLALFGFLKAQLLVGLGI 194

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
             +  +A++    P  + L ++  ++  IP               +    +    + +  
Sbjct: 195 FALAIAAFYFLKTPFPLLLALLLVVLDFIPFLDSFILLVPWAIYQVFAGDYIYAAVLIVL 254

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +  F+V + + P ++G  I L  L TF  +  G +  G  G+ IGP+L  ++  + +
Sbjct: 255 TVGQFLVRRMIEPKIIGDKIGLSSLSTFIAMFIGFKIFGFSGILIGPLLFVVVLSLIQ 312


>gi|229545953|ref|ZP_04434678.1| permease [Enterococcus faecalis TX1322]
 gi|307273353|ref|ZP_07554598.1| hypothetical protein HMPREF9514_02118 [Enterococcus faecalis
           TX0855]
 gi|307277498|ref|ZP_07558590.1| hypothetical protein HMPREF9521_03091 [Enterococcus faecalis
           TX2134]
 gi|307279172|ref|ZP_07560230.1| hypothetical protein HMPREF9515_01491 [Enterococcus faecalis
           TX0860]
 gi|307288140|ref|ZP_07568150.1| hypothetical protein HMPREF9505_01546 [Enterococcus faecalis
           TX0109]
 gi|229308916|gb|EEN74903.1| permease [Enterococcus faecalis TX1322]
 gi|306500876|gb|EFM70194.1| hypothetical protein HMPREF9505_01546 [Enterococcus faecalis
           TX0109]
 gi|306504297|gb|EFM73509.1| hypothetical protein HMPREF9515_01491 [Enterococcus faecalis
           TX0860]
 gi|306505763|gb|EFM74941.1| hypothetical protein HMPREF9521_03091 [Enterococcus faecalis
           TX2134]
 gi|306509880|gb|EFM78905.1| hypothetical protein HMPREF9514_02118 [Enterococcus faecalis
           TX0855]
 gi|315027394|gb|EFT39326.1| hypothetical protein HMPREF9494_00882 [Enterococcus faecalis
           TX2137]
 gi|315145673|gb|EFT89689.1| hypothetical protein HMPREF9495_00632 [Enterococcus faecalis
           TX2141]
 gi|315150661|gb|EFT94677.1| hypothetical protein HMPREF9499_01336 [Enterococcus faecalis
           TX0012]
 gi|315153331|gb|EFT97347.1| hypothetical protein HMPREF9502_01369 [Enterococcus faecalis
           TX0031]
 gi|315157941|gb|EFU01958.1| hypothetical protein HMPREF9508_02076 [Enterococcus faecalis
           TX0312]
 gi|315160240|gb|EFU04257.1| hypothetical protein HMPREF9513_03217 [Enterococcus faecalis
           TX0645]
 gi|315164244|gb|EFU08261.1| hypothetical protein HMPREF9516_02188 [Enterococcus faecalis
           TX1302]
 gi|315166662|gb|EFU10679.1| hypothetical protein HMPREF9517_02690 [Enterococcus faecalis
           TX1341]
 gi|315170054|gb|EFU14071.1| hypothetical protein HMPREF9518_02288 [Enterococcus faecalis
           TX1342]
 gi|315174444|gb|EFU18461.1| hypothetical protein HMPREF9519_00612 [Enterococcus faecalis
           TX1346]
 gi|315575580|gb|EFU87771.1| hypothetical protein HMPREF9507_00751 [Enterococcus faecalis
           TX0309B]
          Length = 319

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 102/331 (30%), Gaps = 17/331 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               +L   I  + +  +        +  +  + ++    V+ L  + +       + + 
Sbjct: 1   MITTILLTFIFTYLAVRLVHFVQRYMKIPTIVIVLLTYALVVFLIYLAITKYVPVLVNQT 60

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            ++++ VV   Q                  ++         Q L+  +      NG   I
Sbjct: 61  TQMINSVVDFYQS---------------PHTDTNQVLQFIDQYLEKSNLLSQLQNGASMI 105

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            R+    G + L + +S I     +    +        L S  +  F   +   +     
Sbjct: 106 LRYIQDIGAVGLSFVMSFILSFFFMIEKKQMADFSKLFLKSDFDWFFQDIY-YFANKFVN 164

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIY 268
                      IA+   ++   A  + G     +L ++  I++++P    I     +S  
Sbjct: 165 TFGVVMEAQFFIAVVNTVITTLALAIIGFTQLPSLAIMIFILSLVPVAGVIISCIPLSFI 224

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
              +G + +   +     I        L P  +    +LP   TF  L+   R  G+ GL
Sbjct: 225 AYSQGGLNDVIYILALITIVHLFESYVLNPKFMSSKTELPIFYTFVILLVSERLFGVWGL 284

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +G  +      + K   +   +    +  N
Sbjct: 285 IVGIPVFTFFLDVLKVKPIRGLKRLPNVKKN 315


>gi|271968538|ref|YP_003342734.1| hypothetical protein Sros_7304 [Streptosporangium roseum DSM 43021]
 gi|270511713|gb|ACZ89991.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 351

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 101/335 (30%), Gaps = 21/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      + L  +  +     P   AL +     P+      +       +AV    
Sbjct: 15  RLLLGLAAAVVTLAGIRAVADIAGPAFLALTLTIAVSPLRVWLRRRGARPWVLVAVPLLT 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L     + L    ++   +LV+ +         +   ++     +  ++       
Sbjct: 75  VLLLL-----VALVGSLVVSAAQLVALLPTYAAQYQRLLASIARGIDHLGITQ------- 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     + L       +      F    L    ++I + + LF    D       +
Sbjct: 123 ------EQVNSALSKLDPGALIGLVQGFLGGLLSIGSALILIALLLFGMSLDATVTHDAI 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SL       +         +   S  +  T+  +   ++  +A W+ GVP  +  G++ 
Sbjct: 177 RSL--RTSRPHTVGALSEFARGTCSYLIVSTVFGLIVAVLDTAALWIMGVPLPLLWGLLA 234

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I   IP    +        L +          + +  ++  F++   ++P  VG    L
Sbjct: 235 FITNYIPNIGFVIGVIPPALLALLDSGPSTMVAVVVVYSVLNFVIQSVIQPKFVGESAGL 294

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               T   L+     +G LG  +   L A    + 
Sbjct: 295 STTVTILSLLVWAYELGALGAILAVPLSAFARALL 329


>gi|218662617|ref|ZP_03518547.1| putative transmembrane permease protein [Rhizobium etli IE4771]
          Length = 389

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/354 (11%), Positives = 106/354 (29%), Gaps = 17/354 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++    +  +   + L ++Y +     P+  A+++G        +   K        A +
Sbjct: 51  ISTAWAIIGIFAILGLAAVYMMSLILIPITLAVVVGMILGLAAENLS-KMGVPRLANAFL 109

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            +  V  +  +    L         E  + V       +P    +  +       E    
Sbjct: 110 LSSGVALVIALLANSLADPLTTLANEAPAFVERTISRIMPYLERIEWLHITPATFESGPM 169

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +             + T+    + +    F  + L     +      +  F      ++
Sbjct: 170 SIGALLENTGNVLHVVTTSLTPALVQGLIFFAALLLFLASRVNLRKTIIMTFRTRPQRLA 229

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                           +I   V +V+   F   ++I +G G+V+    + +G+ + V  G
Sbjct: 230 A--------------IRIINAVEQVLGFYFATASLIYVGLGIVMTIIAYASGLSAPVLWG 275

Query: 246 VITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
               + + IP       T       ++                    +++  + P ++G 
Sbjct: 276 FFAFLSSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLVMENIIFPAVMGR 335

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +++     F  ++      G +G  +   L  ++  I +E ++  +   +   
Sbjct: 336 RLEINPFIVFIAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEERPQPQLPK 389


>gi|119488061|ref|ZP_01621505.1| hypothetical protein L8106_11707 [Lyngbya sp. PCC 8106]
 gi|119455350|gb|EAW36489.1| hypothetical protein L8106_11707 [Lyngbya sp. PCC 8106]
          Length = 316

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 100/327 (30%), Gaps = 28/327 (8%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
            I+  + +          +                       F   I   +   L I  +
Sbjct: 5   AIIQLINYFYSVIVIFTISGTFAALLNYPVQKVSRY--IPRGFSIAIVCTTAFGLLIGLI 62

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L    + + +  V+ ++   Q                         ++  ++      
Sbjct: 63  AVLGIEVVNQGQGFVTSLLDFVQD----------------------SDVNPVENFLDSIN 100

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +         F        LS+IF+++   +   DG  I      +       
Sbjct: 101 IEKMIQALQAGLLTGLGFVQGAFSNFLSLIFIVVICVYMLIDGIKIWSACLKIVPIEIRD 160

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP-GG 257
            +      V K     F    ++ +   +    A+ + GV   + L +I  ++ +IP  G
Sbjct: 161 RFS---LTVQKSFIGFFRAQFLLVLFLSISGFIAFKILGVQYALFLSIILGLIDVIPGVG 217

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
             +    VS+ + +    + A  + +   I   I D  + P L+   + +  +  FF L 
Sbjct: 218 GTLCVIIVSLLVFLSEGGWMAIKVLIAATIVQQIQDNLISPKLMKDNLNINPVFLFFALF 277

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKE 344
            G +  G+LG+F+   +  ++ + + E
Sbjct: 278 VGEKIAGILGIFLSIPIAGMLIIWFSE 304


>gi|88703905|ref|ZP_01101620.1| Protein of unknown function, UPF0118 [Congregibacter litoralis
           KT71]
 gi|88701732|gb|EAQ98836.1| Protein of unknown function, UPF0118 [Congregibacter litoralis
           KT71]
          Length = 395

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 13/302 (4%)

Query: 45  WPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI 104
            PI  S  +     +   A +    +  L +  L  L       +KE  + +    +   
Sbjct: 90  RPIVRSVHATAGVPAPLTAALIVSIITVLLVSGLYSLGEPAKEWLKEAPNALRALQRQAS 149

Query: 105 PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
            V   L D+          +   +  ++   ++   +                M   +  
Sbjct: 150 EVRGPLEDMRETRAVITDLSNGSAKGKTEIFVNSESVVEQ----------SVMMKTSEGF 199

Query: 165 LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAI 223
              +  ++ LFF    G  + +   +L           ++++ +   I    L +T+I  
Sbjct: 200 AYSVATLVMLFFILGWGDRLFRNAIALLPGFAERRGAVQVAQAIESAIGRYLLMITLINS 259

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF- 282
             G  + +  +  G+P+ V  GV+ A++  +P       T V + + +         L  
Sbjct: 260 CLGFAVAALSYFIGLPNPVLWGVVAALLNYMPYIGAAITTLVLLAVSLISQPLEFPILTA 319

Query: 283 -LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L   +        + P+ VG  + L  L  FF L+      G +G  +   ++    V 
Sbjct: 320 PLAFLVLTTFEGYIVTPYAVGRSLTLNPLIVFFSLLVCFFLWGGIGALLAVPILVSFKVA 379

Query: 342 WK 343
            +
Sbjct: 380 LE 381


>gi|209885032|ref|YP_002288889.1| putative transport protein/permease [Oligotropha carboxidovorans
           OM5]
 gi|209873228|gb|ACI93024.1| putative transport protein/permease [Oligotropha carboxidovorans
           OM5]
          Length = 376

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 35/339 (10%), Positives = 86/339 (25%), Gaps = 8/339 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +L+  +        + S +++G     +                ++  V + 
Sbjct: 23  ILAVSFAALLIFAWEFAATLFLIFSGILLGVALTAMTKLLKRVMPGPHAGRLLVICVVLA 82

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +              +   L   +     +              +  S +         
Sbjct: 83  AMLAGIFTLGGSTIASQAAVLSGTLKAQVVNLKTFLESHGFDASYLDLSAIAASPNGTAA 142

Query: 132 SLKILSETFLKT--------NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +    S              +G   I     +  +  +    +   ++     F      
Sbjct: 143 TTTPTSPNVSHNLPSAGAIASGGGAIVSQTLKIILGTVGAVGNFFIVLFLGLAFAAQPGV 202

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             + L ++         + +   +   +    +   I      +V        G+P    
Sbjct: 203 YRKGLIAMSPAAVRPQMEALIDRISSTLERWLIAQMITMSVVFVVTWLGLLAIGIPGAFI 262

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           LGV   ++  IP    +    V +   I          F+       +    L P +   
Sbjct: 263 LGVQAGLLTFIPTVGALVAGIVILLASISSGWVAVGSAFVLLMAVHALESYILTPIIQRE 322

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            I +P    F   +      G+ GL +   +MA++ VI 
Sbjct: 323 AIDIPPATLFAFQILLGVVFGVWGLALALPVMAIVKVIL 361


>gi|167572529|ref|ZP_02365403.1| hypothetical protein BoklC_22016 [Burkholderia oklahomensis C6786]
          Length = 231

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 69/227 (30%), Positives = 117/227 (51%)

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           S+  +       +  +  E  +K      +  F   FG       +   FM++ LF  ++
Sbjct: 4   SQQASGWWHAYLAKPLHPEAAVKGVDDGAVVTFGRHFGSRIAHAAVLFGFMLVTLFVIFQ 63

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G  +S  L +     F      + + +   +  T  G+ ++  GEG++LG AY  AG+P
Sbjct: 64  AGPRLSGALLTGVRRAFGDNGAALLQRMAAAVYGTVTGLVVVGFGEGVLLGVAYAFAGLP 123

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               LG++TA+ AM+P  AP+ F   +++L ++G +  A  L  +G + +F+ +  +RP 
Sbjct: 124 HAALLGLVTAVAAMLPFCAPLVFCGAALWLFVQGAVGWAIGLAAFGFVVVFVAEHFVRPV 183

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ V+W E +
Sbjct: 184 LIGNSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTVLWVEWV 230


>gi|319937570|ref|ZP_08011975.1| hypothetical protein HMPREF9488_02811 [Coprobacillus sp. 29_1]
 gi|319807410|gb|EFW04019.1| hypothetical protein HMPREF9488_02811 [Coprobacillus sp. 29_1]
          Length = 337

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/337 (13%), Positives = 105/337 (31%), Gaps = 7/337 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++  + + I    L ++     P   A++  F   P+            + + V   
Sbjct: 3   RTKVIGLICVVIYCFVLKYMFHVIFPFAFAVVCYFVMKPLIDRLEKCFHIQRSAIGVSLL 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  +  + L  LF YG+        K+ +  +  +        I        L  +  
Sbjct: 63  LVIYLILAILLGCLFTYGVFFTIHFFEKIPMYYEDMLLPFLEQLTIWVQQHFPILMNEDY 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  +L+        +  +    S        Y  S    +I+ FFF  D   +   
Sbjct: 123 -------LLALQNFLGQSLLNVAGSFSTVITQIPIYLFSFFLFVISTFFFMLDYEEMKGN 175

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L S+        + +I     K +        I+      +L   + +  +   +    +
Sbjct: 176 LLSICSQHVMNSFVRIKNKCLKSLWVYVKCQLILMSICFFILLIGFAVMRMSHPLLYAFV 235

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           TA++  +P             + +    +          + + +V   L P ++   +K+
Sbjct: 236 TALLDSLPFIGVGIVLIPLCIVYLLQGAYLKAFYIFLIYLIINVVRSLLEPRIMNKQMKI 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P       ++  +   G++G+ + P+ M+LI      
Sbjct: 296 PSFLLLLSMMVHLYFFGMIGVILSPIHMSLIYGFLDI 332


>gi|114762133|ref|ZP_01441601.1| hypothetical protein 1100011001331_R2601_14380 [Pelagibaca
           bermudensis HTCC2601]
 gi|114545157|gb|EAU48160.1| hypothetical protein R2601_14380 [Roseovarius sp. HTCC2601]
          Length = 350

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/349 (12%), Positives = 108/349 (30%), Gaps = 19/349 (5%)

Query: 1   MRETMLNPQGIMR----WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           M+   +    ++R     M   ++L  L   +  FAP+  A++ G    P+      +  
Sbjct: 1   MKRPAIVSDTVLRVSTVIMASGVLLFGLKVAQDIFAPLTLAIVTGVIFAPLADRLE-RLG 59

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                +A+   + +          +  Y       L+ ++         +      +  G
Sbjct: 60  LPRGLVAMGLIIGIFFAIGALAYLVEPYI----TTLIDRLPSIKYEIRKLFIEYQGLIQG 115

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                         + ++    +  +      IP       +        +IF+    FF
Sbjct: 116 ---------FDEMNKEVEAALGSGGEQKEAADIPGLTDAMFLAPQILAQMLIFLGGLFFF 166

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                         +G  +      +       ++   F  ++++  G G+ +G+A  L 
Sbjct: 167 LLTRNEIYRYISAKIGTGMDTPKLLERFCDAEAMVSKYFAAISVVNAGLGIAVGTALMLL 226

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKT 295
           G+P  V  G+   ++  +    P +  A  +   ++  +                   + 
Sbjct: 227 GLPGAVVWGIAAMLLNFVLYLGPAALAAGLLLAGVVNYDGLMTFAPMAIYLCCNMTEAQF 286

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + P L+G  +++     F  L+  +   G LG  +   +  ++  ++  
Sbjct: 287 VTPALIGRHVQINPFLIFVSLIFWLWFWGPLGGIVAIPVTLILLRLFDI 335


>gi|291296850|ref|YP_003508248.1| hypothetical protein Mrub_2477 [Meiothermus ruber DSM 1279]
 gi|290471809|gb|ADD29228.1| protein of unknown function UPF0118 [Meiothermus ruber DSM 1279]
          Length = 378

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/358 (12%), Positives = 118/358 (32%), Gaps = 15/358 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  ++ +++   L   +     V +A +  + + P+   F  ++   +  + V+    +
Sbjct: 21  LLAGLVFWLLSWVLNGARTAIGIVSTAFVFSYLASPVVRWFEQRRLTRALGVVVVFVGLL 80

Query: 71  MCLFI--VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             L +  V L  +       +  L S V         +P  +  I       E   +   
Sbjct: 81  FFLGLATVLLAGMTTQLARFVNNLPSLVEPLVGWARGLPEQIGRIELPPVLLEALNQATL 140

Query: 129 HPQSLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           + Q+L       L       +        F    L     ++ +I    +   D   +  
Sbjct: 141 NLQTLLQAFTQTLLRGLQSLLAQGGNLLGFFTGLLGGAFQLLTVITISIYLLYDLPRVGA 200

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------- 237
            L       +    +++++           G  + A+  G+++  A +L+          
Sbjct: 201 ALFRAVPLPYQPKVQELAQKADAAFGGYVRGTLLGALFNGVLISLAMYLSFGAFQGFGVG 260

Query: 238 -VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            +   ++LG +  I + +P    I     ++ L +         + L   +   I    +
Sbjct: 261 VLTQAMSLGFLAFIFSFVPVLGVIISAIPALLLALPLGWLAFAVVALVLWVCNQIQG-VV 319

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            P ++G    L  +     ++ G    G+ G  +   L+A   +++ +  +  +  +E
Sbjct: 320 WPIIMGRTTSLHPVTGIAAVLIGGSLFGVAGALLAVPLVAFFKILYNDYYLNSRFYQE 377


>gi|84499944|ref|ZP_00998210.1| hypothetical protein OB2597_08389 [Oceanicola batsensis HTCC2597]
 gi|84391878|gb|EAQ04146.1| hypothetical protein OB2597_08389 [Oceanicola batsensis HTCC2597]
          Length = 345

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 103/342 (30%), Gaps = 16/342 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M+  +      +  ++   L+  K    PV++A+I  +      ++  S           
Sbjct: 1   MMIEKATYGTALTLMLGWLLWIGKPVLLPVIAAMISVYVLSTAAAAMQSLPVLGRFPGWA 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             TV ++  F + +  LF   +  + ++ + +     +   +    +++ G         
Sbjct: 61  RRTVILIA-FALGMGLLFLLVINNLSQVAAALPRYESNLDALVTRSANLLGIEDEPTWAN 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   + + S                     +        + ++ + FF    G   
Sbjct: 120 VRRMTLDRIDVTSW-------------VTPALLSLRGFGVTLFLVVLYSSFFMAERGSMA 166

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + + ++G     +    +   V + I       T +    G +      + G+   +  
Sbjct: 167 RKVVIAMGGEEAGSRALLLLSRVNERIGRYLFVKTAVNAILGALCFGIMLVLGIEFALFW 226

Query: 245 GVITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            V+ A +  IP    I      + L     G +  A+ + +        V   L P ++G
Sbjct: 227 AVLIAFLNYIPYIGSIVGVIFPVLLSLAQFGTLLMASVVLVTLTAAQTFVAAYLEPRMMG 286

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L        L       GL G  +   + A + ++  E
Sbjct: 287 RAFNLSPFVVLLALAFWSTLWGLPGALLAVPMTASLVLVLSE 328


>gi|148243365|ref|YP_001228522.1| permease [Synechococcus sp. RCC307]
 gi|147851675|emb|CAK29169.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 356

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 116/344 (33%), Gaps = 19/344 (5%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F++  +L  L  F A  +SA +I F           +         V+     + + ++ 
Sbjct: 21  FVLRQALLRLAPFPALFISAALIAFLLDIPRRWLQHR-GVPRPLTMVLVLGVTVGVVVLS 79

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            L+L    + ++ EL++      +        L +        +   + +    S     
Sbjct: 80  GLWLVPRLIEQLGELINAAPGWLEQAQNQLNVLQE--------KALERGIPTDLSPLTDD 131

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                T     + +         L   ++ I +++   F    G +IS  L       + 
Sbjct: 132 LLARSTRLARSLSQQLLGLLSATLGLTVNSIIVLVLAVFLLLGGETISAGLARWVPDDWR 191

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + +  R  F G  ++A+    +    + L  +P  +   ++     +IP  
Sbjct: 192 EL---VVGSLNRTFRGYFAGQVLLALILSGLQVVVFTLLQIPYGILFALLIGFTTLIPYA 248

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           + ++   +   +L   ++     +         +VD+ + P LVG  + L      F L 
Sbjct: 249 SALT-ITLISIVLTVEDLRTGLEVLAAAISVGQVVDQVIAPRLVGTIVGLHPAWVLFSLP 307

Query: 318 GG------VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G      +    LLGL +   L +++  I  E  + ++ ++  
Sbjct: 308 VGSRLGALLGCGQLLGLLLAVPLASVLKTILDEVYIRLQPSEPP 351


>gi|282895571|ref|ZP_06303705.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
 gi|281199411|gb|EFA74275.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
          Length = 358

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/304 (13%), Positives = 89/304 (29%), Gaps = 11/304 (3%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
            F            V   +  + +     + L      ++ EL++ +      G    + 
Sbjct: 56  KFFHSLGVPRILAIVGVLLLTIVMLGAIGVILLPLIFQQLNELINILPAWISSGTQQLQA 115

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
             D            + L               +N I         F    + + L++I 
Sbjct: 116 FLDW-------AATQQDLPVNIIGIATQLLEKISNQIQSFTGKILSFAFDTIGFLLNLIL 168

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I+   +   +G  +   L            + + +      ++ F+G   +    G+ +
Sbjct: 169 TIVLTIYLILNGEKLWDGLYGWLPTYLGVKARALLKE---DFQNYFIGQATLGAVLGVTV 225

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
              +    +P  + +       ++ P G  I    VS+ +    N + A  + L      
Sbjct: 226 TLTFIALKIPPSLIIWNYHWFFSLFPFGTGIGIGIVSLLIA-LENFWQAVEVALIAVTID 284

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I    + P L+G    L  +     L+ G +  G+LGL I   + + I           
Sbjct: 285 QINSNIVAPRLLGNLTGLNPVWVVISLLVGAKLGGVLGLLIAIPIASFIKDFADIWRQGQ 344

Query: 350 KENK 353
            +  
Sbjct: 345 LQTD 348


>gi|77465347|ref|YP_354850.1| hypothetical protein RSP_3345 [Rhodobacter sphaeroides 2.4.1]
 gi|77389765|gb|ABA80949.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
          Length = 432

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 111/339 (32%), Gaps = 21/339 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
               G +  +   ++L  L   +     +  ++I+   +    +     +         +
Sbjct: 64  RVQTGALVIIAFAVVLALLVQAQFILISLAVSVILFSLTSDAIALVARVRFGPVKIPNWL 123

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A+   + L  + LL L    + ++  ++   +  ++        +    G          
Sbjct: 124 ASSLALLLLAIVLLSLAAVIVSQVNTVLLTALSYSEQAPAAVAAIFSWLG---------- 173

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                   K   E  L +     I  +             + + +I+ + F + +     
Sbjct: 174 --------KDAEEAVLSSLRAVEISGYLRTLAAQAGTLMQATVLVILFVGFLFAERVWFP 225

Query: 186 QQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +L +L  +       ++I   +   +    L  T+++   GL++       G+     L
Sbjct: 226 VKLLNLFGNPDRARRVEEIVSSIMHRVNRYLLVKTLVSAITGLLVWGVAMAFGLDLAAPL 285

Query: 245 GVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G++T I+  IP    I      V +  +   ++  A  +     +  FI    L P L+G
Sbjct: 286 GMLTFILNFIPSLGSIVATLLIVLVTFVQTVDVSTALSVLALVGVIQFICGNILDPMLMG 345

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             ++L        L       G+ G+F+   +M  + ++
Sbjct: 346 RALQLSSFGIIISLAFWGAIWGIPGMFLSVPIMVGLMIV 384


>gi|206970693|ref|ZP_03231645.1| membrane protein [Bacillus cereus AH1134]
 gi|206734329|gb|EDZ51499.1| membrane protein [Bacillus cereus AH1134]
          Length = 340

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 115/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILTLVLYGLKSMINLILITFILTFLMNRFQRFISKKLKMNRKVV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++   +  L        +++ +L+ +  L  QH                    
Sbjct: 65  IACLYIILVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEMIRYILSAINEMEVSKYIEQGVDVIYQSIANIGKVSLQIILSLILSLFFLLEKERIIS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+  G++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNGVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLTVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|229495330|ref|ZP_04389065.1| putative membrane protein [Porphyromonas endodontalis ATCC 35406]
 gi|229317773|gb|EEN83671.1| putative membrane protein [Porphyromonas endodontalis ATCC 35406]
          Length = 328

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 94/298 (31%), Gaps = 14/298 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
              + +  L A+ +             K        A +  +  + LF++PL  +    +
Sbjct: 40  ALPYLSGFLGAITLFSILRGQMRFLTKKWHFPRWLAAFLLILETLFLFLLPLAGIASMLI 99

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                    +       +       +  G  +             +L  + +        
Sbjct: 100 DLFTHNHIDLNEWYHQAVQWVDEAKEWIGVDFVKRDGFFVEQVLPALTKMGQ-------- 151

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                F ++  +      ++ + ++  L++   +       +  L         + +   
Sbjct: 152 ----TFTTKIVVGVYSLVVNSVVLLFVLYYMLYEREYFETAIRELLP-FTEENKRILVSE 206

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
             ++I +  +G+ +IAI +G      Y   GV   +   V+TA   +IP    +      
Sbjct: 207 TQRIIAANAVGIPLIAIVQGGFAYLGYIFFGVEGALFYAVLTAFATIIPMVGTMVVYVPL 266

Query: 267 IYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                  GN  +   L ++G + +  +D  +R  L      +  L T FG++ GV  +
Sbjct: 267 ALAFGFAGNWGSCIGLLIYGFLVIGGIDNVIRFLLQKSLADIHPLVTVFGVIFGVSIL 324


>gi|82702638|ref|YP_412204.1| hypothetical protein Nmul_A1509 [Nitrosospira multiformis ATCC
           25196]
 gi|82410703|gb|ABB74812.1| Protein of unknown function UPF0118 [Nitrosospira multiformis ATCC
           25196]
          Length = 399

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 103/323 (31%), Gaps = 6/323 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + + ++L  L+F + FF P+L  +++     P+       +       A++  V 
Sbjct: 46  IALWIIALVVLLGGLHFAQTFFVPLLFGVLVSNALSPVVDWLERCRVPRILGAALVLVVL 105

Query: 70  VMCLFIVPLLFLF--YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  +  V L         + ++ E+  K+  + +        +                 
Sbjct: 106 LGGVSWVTLSLSGDASLIVEKLPEVAHKLRHSLRTLRSEGPSVLQQVEKAAKELEKAAVD 165

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  +S               ++  F  +   + + +   +  +++  +F    G    ++
Sbjct: 166 AGLKSPAAAVVITSHAEDGAWVKDFLLKQSALLVSFAAQMPVVLLLTYFLLAAGTHFRRK 225

Query: 188 LDSLGEHLF--PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           L  L            +I   V   ++   L + I      ++   A+ L G+      G
Sbjct: 226 LIKLVGPSLTRKKDAVRILEEVHLQVQRYLLVLIISNTLIAVLTWWAFELYGLEHAGVWG 285

Query: 246 VITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V   I+  +P    ++    S    LL  G++  A  +     +    +      +L G 
Sbjct: 286 VAAGILRFVPYLGTMTILLASGIAGLLQFGSLPLALAIAATAVLISGSIGMLFGTWLQGR 345

Query: 304 PIKLPFLPTFFGLVGGVRTMGLL 326
             ++     F  L+      G+ 
Sbjct: 346 FARVNEAVLFIVLLFFGWLWGVA 368


>gi|212223162|ref|YP_002306398.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus onnurineus NA1]
 gi|212008119|gb|ACJ15501.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus onnurineus NA1]
          Length = 348

 Score = 89.3 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 123/348 (35%), Gaps = 29/348 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M          ++ II ++   +     P+   L++ +  +PI+   I +  E+    A 
Sbjct: 1   MRAEIIAWATTVLVIIYIAWEVVSPLITPIFFGLVLAYAVYPIHKRLIPELGEAR--SAF 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + TV ++ L       L              VV      +  P                 
Sbjct: 59  LLTVGMVGLGGTITAELIMISAQVAASFYYNVVDFFNWILAQPL---------------- 102

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  S  +          I  +  + S+       Y L +   +   ++   +  SI
Sbjct: 103 ------PSEVLDFIRNFSGEFIPKLSEYLSKQAFSLPMYPLQLFIFLFTFYYALANSTSI 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS---H 241
            +Q+            ++I + V K + +      ++ + +G+++   + +  V      
Sbjct: 157 IEQIQLSLPEKNRHLGEEILQSVSKTLGALVRAWLLLNVAKGVLMTFGFIIFDVSDIYTA 216

Query: 242 VALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +  G +T + + +P     + +   + Y   +G   +A  + L+G   +  + D  +RP 
Sbjct: 217 IVAGFLTFLFSFVPLFEGWMIWLIAAAYFAKEGMYLHAAGISLYGFFLVSPMPDYIIRPL 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +V     L     F G+VGG   MG+ GL IGP+++ L+  + KE   
Sbjct: 277 IVAKDTDLNETLVFIGMVGGTWAMGIKGLIIGPIVLNLLLTLLKEWKR 324


>gi|330506790|ref|YP_004383218.1| hypothetical protein MCON_0564 [Methanosaeta concilii GP-6]
 gi|328927598|gb|AEB67400.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 346

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 112/334 (33%), Gaps = 17/334 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +  +L++  F   F   ++   +  +   PI   F  +K+  S   A+   V + 
Sbjct: 15  ILILALAAVLMTACFAFPFLDGIILGSVFAYVGRPIRDRFGKRKKLGSLVAAICVVVPIF 74

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +  L +    +   K                   L    G +             +
Sbjct: 75  LMLGLGSLEVATQIIALAKN---------------QEALRYWLGYLMQQTATDLPSWARE 119

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           SL    E                + G +     ++ +      +F   DG      L SL
Sbjct: 120 SLLSGLENAFGLIASLAASIPILQIGRMASLGIINFLISFPICYFILLDGEGFVGSLISL 179

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                    ++    + +++   F+G    +I   L+    ++L  +P  +AL  I  I 
Sbjct: 180 LPDGEMRVLERYIDRIDRILSGIFIGTVYTSIVGSLIAAVIFFLFDIPRPIALASIVFIA 239

Query: 252 AMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDK-TLRPFLVGGPIKLPF 309
            M+P     +    +++Y      +  A    +  +  +++  +  +RP+++     L  
Sbjct: 240 GMVPVLTSWAVLVPLAVYRYFTVGLEGALFFLVISSALIYLPSELFIRPYIISTRSSLHP 299

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L       GG    G+ G F+ P ++  I+ I++
Sbjct: 300 LLVMLSFFGGALVAGIGGFFLAPAVIGAISGIYQ 333


>gi|315303146|ref|ZP_07873817.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
 gi|313628477|gb|EFR96939.1| membrane protein YdbI [Listeria ivanovii FSL F6-596]
          Length = 360

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/342 (11%), Positives = 102/342 (29%), Gaps = 25/342 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + +
Sbjct: 22  FLQNKSVKRVGVFLLITFILYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 81

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + ++  +        ++ +LV                               
Sbjct: 82  LLYVFIAAVIVLVFVKYIPVLGDQVNQLVKFGNSFFTT---------------------D 120

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +      +  L+  F      +        +        +++   ++   FF      +
Sbjct: 121 SNNDFINYIVRLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKDHL 180

Query: 185 SQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +          + ++                   IIA+   ++   A W+ G P  
Sbjct: 181 ISFTNQFSTSKIGFIYDEVKFFGAKFVGTFGKVIEAQFIIALVNAVLTTIALWILGFPQL 240

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L ++  ++ +IP    I     ++I     G +     + +   +   +    L P L
Sbjct: 241 MTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILIVVIVIHALESYVLNPKL 300

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +     LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 301 MSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 342


>gi|218673206|ref|ZP_03522875.1| putative transmembrane protein [Rhizobium etli GR56]
          Length = 388

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/350 (10%), Positives = 104/350 (29%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     P+  A+++G            K        A + +  
Sbjct: 54  WAIIGIFAILGLAAVYMMSLILIPITLAVVVGMILGLAAEKL-GKMGVPRLANAFLLSSG 112

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  +    L     +   E  + V       +P    +  +       E     +  
Sbjct: 113 VALVIALLANSLVGPLTMLANEAPAFVERTINRIMPYLERIEWLHITPATFESEPMSIGA 172

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + T+    + +    F  + L     +      +  F      ++    
Sbjct: 173 LLENTGNVLHLVTTSLTPALVQGLIFFAALLLFLASRVNLRKTIIMTFRTRPQRLAA--- 229

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I +G G+V+    + +G+ + V  G    
Sbjct: 230 -----------IRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYASGLSAPVLWGFFAF 278

Query: 250 IMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP       T       ++                    +++  + P ++G  +++
Sbjct: 279 LSSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLVMENLIFPAVMGRRLEI 338

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  + +E ++  +   +   
Sbjct: 339 NPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTVIEELLIEERPQPQLPK 388


>gi|313894745|ref|ZP_07828306.1| putative membrane protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312976654|gb|EFR42108.1| putative membrane protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 362

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 102/343 (29%), Gaps = 9/343 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS-------TFLAVIATVSVM 71
              + L  +   F P+   +   F       +                +    ++    +
Sbjct: 19  ATALVLRSILQVFYPIFVGVAFAFVLSIPQEALEKILGRHRQMRSHARSISIALSLTGGI 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +         +  ++   + +  A          +  +    +  EL +   +   
Sbjct: 79  IMLFLFANAFIPQFIQTLRGFGTALPEALHEVAAALSGVPTLQ--KYVVELESVDWNQMM 136

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                     +T  +       + F  + ++  + II  I  L         + Q L + 
Sbjct: 137 QRVQEYLASGQTEAVYSAVHTTAEFVTMMVETFVGIILGIYFLGAKEMLTRQMRQMLYAF 196

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +   I  +  +   +   G  + +    + L +   L G+     +  I    
Sbjct: 197 CTRKNADHIAHIGGVFRQKFYAFVCGQMLDSFIFMMGLFTGMILFGISHAAMVSAIVVFT 256

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP    +   A+    +   +   A    +   +   I    + P ++G  + LP + 
Sbjct: 257 GLIPMVGGVIGGAIGAVFIFVESPTQALIFIILLIVLHQIDSNFIYPRIMGRSLGLPEVW 316

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +F  ++ G    G+LG+ +G  + + +  +  E      + KE
Sbjct: 317 SFIAIIVGGGLFGVLGMLLGVPVFSAVYTLLGEYTRNRLKEKE 359


>gi|88601670|ref|YP_501848.1| hypothetical protein Mhun_0359 [Methanospirillum hungatei JF-1]
 gi|88187132|gb|ABD40129.1| protein of unknown function UPF0118 [Methanospirillum hungatei
           JF-1]
          Length = 350

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 105/342 (30%), Gaps = 22/342 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + I      FIIL  L    GF  P L ++        +   F  +  +       I+
Sbjct: 10  TDRIIFLTACCFIILAGLKMAGGFIGPFLLSVFAAVIFSVVSLWFQKRGFDPR-----IS 64

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
                 +F+  L+ +    +L +  L+  +    +        +  I             
Sbjct: 65  GYLAFFIFLGCLIGVVAMVVLSISPLIEHIPRIEEGIQSNMGEIDTILSKFGIKVSTLIP 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            S       +    + T+ I  +                   F+++    F     ++  
Sbjct: 125 ASQMTGSLGVISPEMVTSFIGQLSAL----------------FIVLFTTLFLLLEATVFS 168

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
           Q  +     +             V+    +  T +    G   G A ++ GV      G+
Sbjct: 169 QKINTVLGSYRQELATRMTEFGSVVIEYVIIRTKVNFVTGAGFGIALFIIGVQDPWLWGL 228

Query: 247 ITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++  +P    I      ++  LI+ N + A  + +  +I     +  L P L G  +
Sbjct: 229 LMFVLNFVPYIGFIIALVPPTVLALIEINPYAALLVVIVASIVNLFSENVLFPELAGRGM 288

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +L     F  ++     +G  G+ +   L  L+ +I +    
Sbjct: 289 ELSPAIVFISMIFWGYFLGGAGVVVAVPLTVLLKMILESYPE 330


>gi|328542894|ref|YP_004303003.1| Conserved domain protein, putative [Polymorphum gilvum SL003B-26A1]
 gi|326412640|gb|ADZ69703.1| Conserved domain protein, putative [Polymorphum gilvum SL003B-26A1]
          Length = 389

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 89/322 (27%), Gaps = 21/322 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   ++ ++   L   +    P ++ALI+ +    +  +              +A +  +
Sbjct: 10  LTVALVTLVGWLLAVGRSLLLPFVTALIVWYLINALARAIRLVPIGPFQVPNALALLLAL 69

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                   F+F      + +L             V   LS         EL         
Sbjct: 70  IAIFTAATFVFDLVAANLAQLARDAPTYQARLEAVFATLSTRLSLQDPIELRDFLPD--- 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                           F+ RF +           S   + I + F   +  +  ++  +L
Sbjct: 127 ---------------AFVTRFVAAGATFVTTMAGSASLVFIYVVFLLIEQSTFDRKYRAL 171

Query: 192 GEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                 A     +   + + +       T ++I  GL+        G+P     G I  +
Sbjct: 172 FTSPERAQAAFALREEINRRVLHYIGIKTAVSISTGLLTTLLLTAIGLPYAALFGFIAFL 231

Query: 251 MAMIPGGAPISFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  IP    +        L             + L      F +   + P L+G  + L 
Sbjct: 232 LNYIPTIGSLIAVLFPSVLALVYYDEFGPFIAITLGLGAIQFAIGNLIEPRLMGSSLNLS 291

Query: 309 FLPTFFGLVGGVRTMGLLGLFI 330
            +     L       G+ G+ +
Sbjct: 292 GIVIMLSLALWGAIWGITGMVL 313


>gi|251793230|ref|YP_003007958.1| PerM protein [Aggregatibacter aphrophilus NJ8700]
 gi|247534625|gb|ACS97871.1| PerM protein [Aggregatibacter aphrophilus NJ8700]
          Length = 351

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/347 (13%), Positives = 111/347 (31%), Gaps = 20/347 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M ++    +G++    + IIL  +        P L +L I     P+ +   SKK     
Sbjct: 1   MTKSSSLFKGLVALAAIVIILAGIKAASEIAVPFLLSLFIAIICSPLLNYLTSKKV--PY 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           +LA+ + + ++ +    L  L    + E  + + +                 +      +
Sbjct: 59  WLAITSLLLLILVIFFFLFGLINSAIQEFSQSIPQY---------------RLLLAERVN 103

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L          L I  ++ +       I  F  R  + F     +   +++ + F   +
Sbjct: 104 SLVGLAQEMKIPLDISEKSIMDNFDPSVIMNFVRRVFLSFSGVVTNTFVLLLVVIFMLLE 163

Query: 181 GFSISQQLDSLGEHLFPA--YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                 +               +     +   I S     T++++   + +     +AGV
Sbjct: 164 APYAKHKFVVAFSDDPNNVGQQELYLDRILNGIMSYLGVKTMMSLLTAICVWVLLEVAGV 223

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLR 297
              +    ++ ++  IP    I      I   L+         + +   +    +   L 
Sbjct: 224 QYAILWATLSFLLNYIPNIGSIIAAVPIIVQALLLNGFIVGLGVLVGVVVINVGIGSALE 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P L+G  + L  L  F  L+     +G +G+ +   L   + +  + 
Sbjct: 284 PRLMGKKLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMALKIALEA 330


>gi|331700977|ref|YP_004397936.1| hypothetical protein Lbuc_0607 [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128320|gb|AEB72873.1| protein of unknown function UPF0118 [Lactobacillus buchneri NRRL
           B-30929]
          Length = 349

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 45/333 (13%), Positives = 98/333 (29%), Gaps = 16/333 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R+ ++ +++  LY  +   + VL   I       + ++     +  +  +  +  + V
Sbjct: 13  LRRFTVLMLVIFVLYVTRSMISTVLLTFIFCLLVVKLTNAIRRHIKIPAGIIVTVVYLLV 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      +         +       ++L       +P   +         +         
Sbjct: 73  ILGLYFAVTKYIPKIADQTIRTTQDIILFYTDPKNLPDDTTMSWLNELIKQSNIMAQ--- 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                        NG+  + ++ +  G + +   LS+I                   L+S
Sbjct: 130 -----------MKNGVSLVWKYVTGVGTMGITLFLSMILSFFFAIEQRTMTRFSKLFLES 178

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                F   +    +               IAI   ++         +P   AL ++  I
Sbjct: 179 DFGWFFQDLYF-FGKKFVATFGVVIEAQFFIAICNTVLTTIVMAFMHLPQLAALALMVFI 237

Query: 251 MAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +++IP    I  F  +S+     G   +   L +   +        L P  +     LP 
Sbjct: 238 LSLIPVAGVIISFVPLSLVGYSVGGWNDVFYLLITIIVVHAFEAYILNPNFMASKTNLPI 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             TF  L+ G    G+ GL  G  +      I 
Sbjct: 298 FYTFVVLLIGEHFFGIWGLICGVPIFTFFLDIL 330


>gi|116628720|ref|YP_813892.1| permease [Lactobacillus gasseri ATCC 33323]
 gi|116094302|gb|ABJ59454.1| Predicted permease [Lactobacillus gasseri ATCC 33323]
          Length = 349

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 49/342 (14%), Positives = 103/342 (30%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTF 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     S  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                    
Sbjct: 66  IVVLAYLLVIAIIYFAITIYMPILIKQIVKMSHSLMEFYQS-----------------DN 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +          +     T    +G+  +    +  G + + + +S+I             
Sbjct: 109 MDWLTQYLNHYISDSEITTQAKHGVTILVHALTNVGTLTIAFFMSLIMSFFYTIELDSMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 L+S                              IA+    +      +  +P  
Sbjct: 169 EFSHTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I+++IP    I     +S      G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYILNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 289 MSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|218896894|ref|YP_002445305.1| hypothetical protein BCG9842_B3416 [Bacillus cereus G9842]
 gi|218541176|gb|ACK93570.1| putative membrane protein [Bacillus cereus G9842]
          Length = 337

 Score = 89.3 bits (220), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 51/343 (14%), Positives = 114/343 (33%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           + + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRELKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYVLSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|327404430|ref|YP_004345268.1| hypothetical protein Fluta_2445 [Fluviicola taffensis DSM 16823]
 gi|327319938|gb|AEA44430.1| protein of unknown function UPF0118 [Fluviicola taffensis DSM
           16823]
          Length = 352

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 119/336 (35%), Gaps = 21/336 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +I+ +++V LY  +    P++  +I+      + S F     +   F   + T+    
Sbjct: 17  ALIILALLVVILYLGRSLIIPLIFGVILWLLMRKVRSLFYVIGLKDRWFPKALKTLLSTG 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +    +  +       ++EL+    + N +   + +    +                  S
Sbjct: 77  ILFSLVWVIGLIFERNIQELIKYYDVYNTNLTSILKDFDSL------------------S 118

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
              + +     N  D I ++ S   M       +++ ++I + F   +  S   ++ +L 
Sbjct: 119 SYKIEDITKSFNSNDLITKYFSSVLMSLQTIISNVVIVLIYMLFIILEESSFKFKVKALF 178

Query: 193 EHLFPAYWKKI-SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +      + +  R + K I       ++IA+   ++  S   L G+ +     ++  + 
Sbjct: 179 PNPVMYDERILVIRRIEKAITDYLGIKSLIALVSSVIAYSLLTLMGLNAPFFWALLIFMF 238

Query: 252 AMIPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + IP    +   F      ++  G+   +  +        FI    + P ++G  + +  
Sbjct: 239 SFIPFFGVLISSFLPALFAIVQFGSYSESLIILFSLGSVQFIAGNIVEPKIMGNTMNVSP 298

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L     L       GL G+F+   +  ++ +++ + 
Sbjct: 299 LVVILSLGFWGFIWGLPGMFLSVPITVIMVIVFSKF 334


>gi|73670404|ref|YP_306419.1| hypothetical protein Mbar_A2944 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397566|gb|AAZ71839.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 368

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 103/338 (30%), Gaps = 15/338 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           YF      P+   +++G     I      K ++     A++A++ +    +  +      
Sbjct: 31  YFAFLILLPLADGIVLGIVFAYIARPIRVKFKKHRKVGALVASLCIFIPIVFIVGAGIVE 90

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++  ++          +     L+                   +S+         + 
Sbjct: 91  ILNQISWVIEHQTAVAAAILNFINSLN-------------IPDKIIESINSAIWDLFTSL 137

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
                      +      + ++ +  II  +F   DG  +      +    +       +
Sbjct: 138 LPAVGSIGLLSYAQSIGLFFINFLISIIFCYFVLADGDRLYCAFLGVIPKEYKGVVNCYA 197

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +  +++  F+G    A+   +     ++  G    +AL  +  + ++IP  A      
Sbjct: 198 HHLDIILKGVFIGNAYSALIVSVTSVFVFYSFGFTHVLALATLIFVASIIPLFAGYMVLV 257

Query: 265 VSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
               +     G    A    +   I     +  LRP+L     K+  +      +GG   
Sbjct: 258 PLALMRYFESGFRSAAIFFTVSSIIIYGPPELILRPYLTSLKSKIHPMLLMLAFLGGAFV 317

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
            G+ G F  P+L+  +   ++           +  ++F
Sbjct: 318 GGIAGFFAAPILLGALVAAYRVYQDHTNPEITETCADF 355


>gi|145350774|ref|XP_001419773.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580005|gb|ABO98066.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 489

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 96/343 (27%), Gaps = 6/343 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +        L  L     P+++A        P+         +  T       +   
Sbjct: 75  VAVIASACACWLLQVLAYLLRPLVTATGAALLLRPLVDFVSDAAYQRETLRRNRLRLCCP 134

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +F VP +      ++ +  +   +V A   G        + P            L    
Sbjct: 135 RVFTVPRIVAIVLALVVVCAVFGTLVWALYLGRVYFLVHWNDPDWNSRFTSRINDLGRSM 194

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           S              +   R  +       D        +    +       +   L  L
Sbjct: 195 SEMAKRVFKKDDVAEEAWARLLANIEATLKDEEFWETLGVGVFHYMQDIMLMLFYTLFLL 254

Query: 192 GEHLFPAYWKKIS-RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVIT 248
                 +  + +  R + K  R     M  IA+   L +GS   L GVP    +A+ +++
Sbjct: 255 APRRELSRARSLVARRIHKATRRFVSIMVQIAVVRALSVGSLLGLCGVPWPLAIAVAIVS 314

Query: 249 AIMAMIPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             +  IP    I  +      I LL            +   +  F+V   + P +    +
Sbjct: 315 FWLFFIPTLGSIVASILPLPMIVLLPDLTERQRVAGSIIPNLVSFLVGDLIGPVVYRKGL 374

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L  +     LV      G  G  +G  L   + ++ +E    
Sbjct: 375 DLNEVTVLLALVFWYSVWGAAGAVLGVPLTCALKIVLEEMPHE 417


>gi|116333210|ref|YP_794737.1| permease [Lactobacillus brevis ATCC 367]
 gi|116098557|gb|ABJ63706.1| Predicted permease [Lactobacillus brevis ATCC 367]
          Length = 347

 Score = 89.3 bits (220), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/337 (12%), Positives = 100/337 (29%), Gaps = 17/337 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
             + ++++  +  + F +  L  +I  +           +         ++  +  + + 
Sbjct: 18  FALILLIILAWNARAFLSLALFTIIFIYLGNAATMGLEHRLHVHHLIATLLVYLIFLGIL 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +     +    + E+  L + +         +   L+     +  +     +     +  
Sbjct: 78  VAAFAQIIPPLVTEVSRLPNTLKELVTTYPQLETTLTRWIKNLTQNASVINNGKTLFTSG 137

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I+  +   +     I  F   F        L           F                 
Sbjct: 138 IVKLSRFSSGVETVILAFFFSFIFNLTKTQLRHFVHAFTKSRFS---------------- 181

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++      +  +      +I     +++    WL G+PS + LG++   + +I
Sbjct: 182 RLFVPMGELILKFVTIFGTVIETQLMICSINTVLMVIGLWLVGMPSLLILGIMVFFLGLI 241

Query: 255 PGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P    +     ++I   I G I     + +   +        L P L+     LP   TF
Sbjct: 242 PVAGVLISLIPLTIIAFISGGILRLAAVLVLVILIHLFESYFLHPRLMANATNLPIFVTF 301

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L+   R  G  GL +G  L+A    ++   +   +
Sbjct: 302 ITLIVSERLFGAWGLIVGVPLVAFFLEVFDVQLKPHR 338


>gi|312891170|ref|ZP_07750692.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311296337|gb|EFQ73484.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 350

 Score = 89.3 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 122/325 (37%), Gaps = 18/325 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             +Y L+G  + +L A+++     P+Y   + KK  +   +A++  +  + + ++P L L
Sbjct: 23  FLVYALRGLSSSILGAIVLFTIFRPVYLYLVEKKHWNKPLVAIMIILVSLIVIVIPFLSL 82

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
               + ++  L S                ++ P   W + +     SH      +    +
Sbjct: 83  SILVVNKISSLTS----------------ANFPIQKWLAAIDAFAGSHLNQPHFVDNINI 126

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                 +             D  L+++ +   L+F +         L          +  
Sbjct: 127 TQKIGTYAAELFPSILGSAADIFLTLLVLYFLLYFMFTQNKEFEAGLIKYAPFR-EQHAL 185

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PI 260
           K +  +     S  LG  II+I +G++      + GV   V  GVI   ++ +P    P 
Sbjct: 186 KFADELRISTYSNVLGQGIISISQGIMFAIGLRITGVEDPVFWGVIGTFISFLPVVGVPT 245

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                 I LL+    +    L ++G + +  +D  LR  +         L T  G++ G+
Sbjct: 246 LAIPFGIILLLNDKTWQGVFLLIYGVLIIGYIDNFLRFIINKRIANTHPLITVIGVIIGI 305

Query: 321 RTMGLLGLFIGPVLMALIAVIWKES 345
              G+LGL  GPVL++   ++ +  
Sbjct: 306 PLFGILGLVFGPVLLSYFLLLVEIY 330


>gi|254422139|ref|ZP_05035857.1| hypothetical protein S7335_2289 [Synechococcus sp. PCC 7335]
 gi|196189628|gb|EDX84592.1| hypothetical protein S7335_2289 [Synechococcus sp. PCC 7335]
          Length = 238

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/222 (18%), Positives = 78/222 (35%), Gaps = 1/222 (0%)

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +           +   +       L   LS++  I    +   D  +++     L   
Sbjct: 1   MQAIAAWAVRSTRQLALRSFTVTTDILGTLLSLVLAIFISGYMLADSSTLTTSFVRLFPQ 60

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAM 253
            +     +    +   I     G  I++    LV G      G+    V LG I  +  +
Sbjct: 61  PWDQEIGQQLPEIGSRIGGYIRGRLIVSFTLALVTGVGLSFLGLKDFAVGLGAIAGVTNL 120

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   PI     ++ + I    +    + L+      I    L P LVG  + +  L   
Sbjct: 121 IPFLGPILGAIPALIVAIPLGGWVVLWVILFYITIQNIETYILDPLLVGNSVGVHPLYQL 180

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             ++GG + +G++G  I P  +A  AV+ +   +  K   EK
Sbjct: 181 LAVLGGTQVLGIIGALIVPPWVAGGAVLLENLYLKPKLKNEK 222


>gi|110679720|ref|YP_682727.1| hypothetical protein RD1_2476 [Roseobacter denitrificans OCh 114]
 gi|109455836|gb|ABG32041.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
          Length = 374

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/346 (13%), Positives = 107/346 (30%), Gaps = 14/346 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + M   +  +      F P++ AL++G    P+ + F  K        A+   +
Sbjct: 17  RVVLVVVGMAAFVWLMKAGTHIFMPLIFALVVGVVFAPLTNFFQ-KLGAPPVVGALAVLI 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            VM   I  +   +        E   ++ +       V          +   +       
Sbjct: 76  IVMSSIIAGVYIFYPVAA----EFALRIPIMWLELRDVISGFRTTIENVENMQNQVAQSL 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P +    +        +  +    S          + +  +   L            +L
Sbjct: 132 APGASPEEATASAVEVSVPSVTDILSHLPAFAAQIMIFVGILYFFL--------LTRIEL 183

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               +    +  ++I       +   FL +T I +  G+++       G+P+ +  GV  
Sbjct: 184 YKYADVSSLSISEEILYRAEADVSRYFLTITGINVSFGVLVALVLSAYGMPNAIYWGVGA 243

Query: 249 AIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +    PI     + +   +  +   +    L   +      + + P LVG  + +
Sbjct: 244 FLVNYVLYLGPISFAAVLLLGGFVVFDGPMSFLPALTYILMNMTEGQFVTPSLVGKQMSV 303

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L  F  LV  +   G LG  I   L+     + KE   A+    
Sbjct: 304 NPLLVFLSLVFWLWMWGPLGGVIAIPLLVWFRQVNKEIRTALMREP 349


>gi|317968134|ref|ZP_07969524.1| hypothetical protein SCB02_01226 [Synechococcus sp. CB0205]
          Length = 357

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 13/296 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  + A +I F           +         ++     + L ++  L+L    +
Sbjct: 34  LAPFPALFVGAALIAFLLDLPTRWLARR-GLPRGLAVLLVVGLSLTLLVLAALWLVPRLI 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ EL++ +         V   L            +T   S   +          +   
Sbjct: 93  EQLGELINSLPSWLVEAEGVLDRLEVWAADRGLPTEFTDLSSTLFA--------RASQLA 144

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + + A       +   ++++ + +   F    G  I   L              ++  
Sbjct: 145 SQLSQRALGILGATVGLTVNVVIVAVLALFLLLGGDPIVAGLARWLPEGTR---TLVTGT 201

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+    +    + L G+P  V   V      ++P  + ++   + 
Sbjct: 202 LNRTFRGYFAGQVLLALILSALQIVVFTLLGIPYGVLFAVAIGFTTLVPYASALT-IVLV 260

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             LL   +      + +       +VD+ ++P L+G  + L        L  G R 
Sbjct: 261 SVLLALDDPRTGIEVLVAAISVGQVVDQVIQPRLMGSIVGLQPAWLLVSLPVGARV 316


>gi|229084918|ref|ZP_04217171.1| UPF0118 membrane protein [Bacillus cereus Rock3-44]
 gi|228698391|gb|EEL51123.1| UPF0118 membrane protein [Bacillus cereus Rock3-44]
          Length = 362

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 114/342 (33%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ ++ + LY LK     +L   I+ F           K + +   +
Sbjct: 27  KNFFRSRGFQRFLVLILLALVLYGLKSMINLILITFILTFLMDRFQRFISRKIKINRKLI 86

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++   +  L        +++ +L+ +  L  Q+                    
Sbjct: 87  IACLYIVLVTFIVTTLYKYLPVLTIQISQLIHQFKLFFQNPPD----------------- 129

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + +    S+I  +  L    R   
Sbjct: 130 NEVIRYVLSTINQMELSKYIEQGVDVIYQSVANIGKVSMQILFSLILSLFFLLEKERIIS 189

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S     +        +   +          +IA+   ++   A    G P  +
Sbjct: 190 FTSKFKESKLRVFYEEI-AYFGQKFARSFGKVIEAQFLIAVVNCILTVIALIFLGFPQLL 248

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP     IS   + I     G I     + ++  +   +    L P  +
Sbjct: 249 VLAVMIFLLGLIPVAGVFISLVPLCIIAYNVGGIAYVVYILIFITVIHALESYFLNPKFM 308

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+     +G+ GL IG  +   +  + +
Sbjct: 309 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLE 350


>gi|229096468|ref|ZP_04227440.1| UPF0118 membrane protein [Bacillus cereus Rock3-29]
 gi|229115392|ref|ZP_04244800.1| UPF0118 membrane protein [Bacillus cereus Rock1-3]
 gi|228668112|gb|EEL23546.1| UPF0118 membrane protein [Bacillus cereus Rock1-3]
 gi|228687030|gb|EEL40936.1| UPF0118 membrane protein [Bacillus cereus Rock3-29]
          Length = 339

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 112/341 (32%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+   LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFIVLIILAFVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVLYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|161831421|ref|YP_001596783.1| hypothetical protein COXBURSA331_A1020 [Coxiella burnetii RSA 331]
 gi|161763288|gb|ABX78930.1| putative membrane protein [Coxiella burnetii RSA 331]
          Length = 344

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 102/341 (29%), Gaps = 21/341 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             +  + ++ +I+  L+  +  F P+  AL++ +    + ++   +           A  
Sbjct: 7   NSVAAFALVVLIVYLLFIGRFLFLPLTIALVLWYVIISL-TALYQRIPFKKRLSHGFALF 65

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    + L   F      + +L+       Q    + RW + + GG            
Sbjct: 66  LAIVTTAIFLYLFFLMFTQSLPDLIEAAPAYQQKLYQLLRWFNVLVGGGRLYLGQLMRQI 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             +++       L     +F       F ++      +    ++                
Sbjct: 126 DLKNIFSELPIILSLTAANFTLVIVYLFFLLLEHRSFNQKLKLLCHSSKKY--------- 176

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        +I + + K + + F   T+I++   L+         + +        
Sbjct: 177 ---------KKVTEIIKEITKDVNNYFKVKTLISLITALLSYFVLLGFKINNAEFWSTFV 227

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            ++  IP   P+      + +       +     L +       I+   + P  +G  + 
Sbjct: 228 FLLNYIPYIGPLIAVVTLLIVASIQVTQLVPFIFLGILLTAIQIILGNFVEPKWLGVRLN 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L  L     L       G +GLF+   +M ++ +I  +   
Sbjct: 288 LSPLVILLSLAFWGSIWGFIGLFLSVPIMVILTIILGKFPK 328


>gi|289706353|ref|ZP_06502711.1| permease family protein [Micrococcus luteus SK58]
 gi|289556848|gb|EFD50181.1| permease family protein [Micrococcus luteus SK58]
          Length = 440

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 100/324 (30%), Gaps = 17/324 (5%)

Query: 10  GIMRWMIMFIILVSLYFLK------GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +  +++   + +++  +            + +AL I     P+     S          
Sbjct: 102 VLTGFLLAVGVALAIGVVSVLRTNGQLIVWIAAALFIALGLDPLVRRVESW-GAPRWVGV 160

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           + A + +  +    +  L    + +  +LV  +       +             W  +L 
Sbjct: 161 LTAALGLAAVAGAFVALLVPTVIEQSTQLVQDLPAIIDGVMR----------AEWFVQLD 210

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
            +                    +  +      FG   L+   S++ +++   +F      
Sbjct: 211 EEFHLQEAVRAQTERLAADGAAVTDLFGGLLGFGQTVLNAVFSVLVVVVLTLYFLSSLPH 270

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +      L         + +S  +   +    +G + +A   G V  +A  +AG P  V 
Sbjct: 271 MKYWAYRLAPRSRRPRIEALSEQITSSVGHYVMGQSFVAALNGAVAFTALAIAGAPFAVL 330

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L  I A MA IP         +   + +  +   A        + L I    + P ++  
Sbjct: 331 LAAIAAFMAFIPLVGAAIGGTLLTLVSLLTSWQTAAVFAAIYFVYLQIEAYVISPRVMAR 390

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLG 327
            + +P       ++ G   +G+LG
Sbjct: 391 AVSVPAAVAVIAVIAGGALLGVLG 414


>gi|328466968|gb|EGF38071.1| hypothetical protein LM1816_13087 [Listeria monocytogenes 1816]
          Length = 347

 Score = 88.9 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 20/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++ ++  + L++  + FL    + ++ +LV  +V    +                    
Sbjct: 65  VIVLSLVAVFLYVAIVHFL-PILINQISQLVDSLVKLYNN-----------------PSD 106

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 107 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 166

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 167 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 225

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 226 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 286 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 327


>gi|301167663|emb|CBW27246.1| putative membrane protein [Bacteriovorax marinus SJ]
          Length = 335

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 99/339 (29%), Gaps = 33/339 (9%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                 +  +       +L + K    P + +L I   S P    F +K +        +
Sbjct: 7   RINNVCLVILTFIAFTGALIYTKSILIPFVISLFIFSVSGPSIDWFETKLKAPRFLAVAL 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +    V  LF+                   +        + D       +     
Sbjct: 67  TMGIFILSSFVVSLFIV------------------KSLNAFIDGIGDYHIRFTLAVDSVV 108

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +  S++I  E    T     +     +F    +++  + + +II + F         
Sbjct: 109 AFLNSYSIEINPEMIKDTVRNLPVLSLVKKFSGGLVNFVSNSVLIIIMVLFL-------- 160

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                +           + + V   I         ++    +++G   +   V       
Sbjct: 161 -----IAGEGVTKIKNDMVKQVHYKISKYVATKFFMSFITAVIVGILLFSLKVDLAFMFV 215

Query: 246 VITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++T ++  IP    I      + +  L  G  +    +    +   F +   + P ++G 
Sbjct: 216 ILTFLLNFIPSIGSIIAVLIPLPVLFLQFGAGWELVTVMSISSAIQFCIGNVIEPKIMGE 275

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            + L  +     L+      G+ G+F+   + A++ ++ 
Sbjct: 276 NLGLHPIVILLFLLFWGLVWGIPGMFLAVPMTAVMKIVL 314


>gi|239917348|ref|YP_002956906.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|281414172|ref|ZP_06245914.1| predicted permease [Micrococcus luteus NCTC 2665]
 gi|239838555|gb|ACS30352.1| predicted permease [Micrococcus luteus NCTC 2665]
          Length = 440

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 88/295 (29%), Gaps = 14/295 (4%)

Query: 10  GIMRWMIMFIILVSLYFLK---GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           G +  + + + +  +  L+        + +AL I     P+     S          + A
Sbjct: 105 GFLLAVGVALAIGVVSVLRANGQLIVWIAAALFIALGLDPLVRRVESW-GAPRWVGVLTA 163

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +  +    +  L    + +  +LV  +       +             W  +L  + 
Sbjct: 164 ALGLAAVAGAFVALLVPTVIEQSTQLVQDLPAIIDGVMR----------AEWFVQLDEEF 213

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                              I  +       G   L+   S++ +++   +F      +  
Sbjct: 214 HLQEAVRAQTERLAADGVAITDLFGGLLGLGQTVLNAVFSVLVVVVLTLYFLASLPHMKY 273

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L         + +S  +   +    +G + +A   G V  +A  +AG P  V L  
Sbjct: 274 WAYRLAPRSRRPRIEALSEQITSSVGHYVMGQSFVAALNGAVAFTALAIAGAPFAVLLAA 333

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           I A MA IP         +   + +  +   A        + L I    + P ++
Sbjct: 334 IAAFMAFIPLVGAAIGGTLLTLVSLLTSWQTAAVFAAIYFVYLQIEAYVISPRVM 388


>gi|42781075|ref|NP_978322.1| hypothetical protein BCE_2006 [Bacillus cereus ATCC 10987]
 gi|42736996|gb|AAS40930.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 337

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 113/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|78045196|ref|YP_360599.1| putative membrane protein, AMBIGUITY [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997311|gb|ABB16210.1| putative membrane protein, AMBIGUITY [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 351

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 99/303 (32%), Gaps = 2/303 (0%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           +  P +  ++I     P+ S F  +   +      I+   ++ LF+  +       + E+
Sbjct: 31  YLLPFIIGILIAIILEPMVSYFEKRFNLTRAIGTGISLAILLILFLTVISSFLVKLVTEL 90

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L + V     +      ++  I GG          L+                     
Sbjct: 91  YRLANYVPDMLTNIKDQITFM--IAGGNRFLGKLPPTLADSIKQNAEKLLNQVVEVGKNF 148

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                       ++ + ++  +IA +FF +D     + + ++    +    + + +    
Sbjct: 149 FTSIFVGLAQVPEFIIILLIALIAAYFFSKDLPQYQRLVFNVLPEDYRQKSEYVLKEAIA 208

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
                     I+     ++     +L G    + LG+I   + ++P   P         +
Sbjct: 209 AAFRFLKAQAILVGLSTILTIFGLYLIGAAYPLTLGLIIGFLDLVPIVGPSLIIFPWAGI 268

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+    +      L   + +    K +   +V   + L  L T   +  G++ MG+LG+ 
Sbjct: 269 LLIQGKYLMAVEILILYLAISAFRKVVEAKVVAENLGLDPLATLISMYVGLKLMGVLGIA 328

Query: 330 IGP 332
            GP
Sbjct: 329 AGP 331


>gi|237798975|ref|ZP_04587436.1| permease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331021829|gb|EGI01886.1| permease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 298

 Score = 88.5 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 102/301 (33%), Gaps = 8/301 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 3   MTDTRRWFWIGGLALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +  LL L      ++  L           +   +  +             
Sbjct: 62  VVFGLFTLVLMTLLLVLVPMLAKQLFRLYELAP----QILDWLQHSAMPWVQAKFGLADG 117

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                     I        + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 118 FWKFDKIKAAISEHMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 177

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L          K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 178 TGKIRGLLPRQREGQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 237

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK---GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           GVI  + A++P    +     ++   +    G+++    +     I   +    L P LV
Sbjct: 238 GVIAGLAAIVPYMGFVIGIGAALIAGLFQFGGDLYPMMGIVAVFMIGQALEGMVLTPLLV 297

Query: 302 G 302
           G
Sbjct: 298 G 298


>gi|295680560|ref|YP_003609134.1| hypothetical protein BC1002_5726 [Burkholderia sp. CCGE1002]
 gi|295440455|gb|ADG19623.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1002]
          Length = 343

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/340 (12%), Positives = 96/340 (28%), Gaps = 18/340 (5%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             ++  ++   LY  +    P+   +I  +  + + +   S     +             
Sbjct: 11  AAILATLLGWGLYVGRPVLVPIAFGIIATYVVFGLANLLRSFPYVGARLREGPRHAIAAT 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L +  +       + +   L++         + +    + +      +           S
Sbjct: 71  LMLFTVYLSVSLLLSDRDRLMAVAPKYEATLLVLLTKFAALLHIETEANWTAIRRDLLAS 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +               +    +           +II +++   FF  +     ++L    
Sbjct: 131 V--------------NVQAIMTSTLSSVSSLFAAIIVVLLYATFFLIEHAKYRRKLVKFA 176

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                     +   +   I       T++    G+      WL G+       V+  ++ 
Sbjct: 177 GGSTR--IVSVIDEINSKIGVYLAMKTLLGAILGIASWICMWLVGLEFAELWAVLIGLLN 234

Query: 253 MIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP        AV   L  L  G    A  LF+   +  F+V   L P+L+GG + L   
Sbjct: 235 FIPYAGSWISVAVPTLLAALQFGQWNAAIVLFISLTLANFVVGHLLDPWLMGGSLNLSPA 294

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                L       G+ G F+   +   + +         +
Sbjct: 295 MILISLAVWSSIWGIAGAFLAVPITVGLVIALTAFESTRR 334


>gi|260433770|ref|ZP_05787741.1| transporter, permease [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417598|gb|EEX10857.1| transporter, permease [Silicibacter lacuscaerulensis ITI-1157]
          Length = 361

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 99/333 (29%), Gaps = 25/333 (7%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +++ ++++ LY    F  P+  AL+I      +    I+              ++ + + 
Sbjct: 22  IVLTLVVLGLYAGASFLVPLTMALLINVLIIALSDRVIALTRAPVWLAN----LAAVTVV 77

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  L  + Y    +  +              V   ++ + G    + +    +S      
Sbjct: 78  LAGLFMITYILGSQATQFARTAGDYESQFDGVINRVTGLVGNDVTTFVRDNLISMD---- 133

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                         +   A                + + + F   +  +  ++L     +
Sbjct: 134 --------------MASVARVLLGSATSMLNQFFLISLYVAFLMAERLAFRKKLRIAAGN 179

Query: 195 LF-PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
               A    +   +   ++      T I++    +  + +   G+       V+T  +  
Sbjct: 180 PVTGAELSSVLDAITFSLQRYVGVKTFISLVTAGISYAIFRALGLEYAETWAVLTFALNF 239

Query: 254 IPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    I        I L+    +     + L      F++   L P L+G  + +    
Sbjct: 240 IPSIGSIIAVVFPAMIALVQFETLGPFLVVVLGCGTIQFLIGNFLDPALLGRSLNMSTFL 299

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
               L       GL+G F+   L   I +I+  
Sbjct: 300 VILALTFWTTVWGLIGAFLSVPLTVCILIIFSH 332


>gi|116251132|ref|YP_766970.1| transmembrane protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255780|emb|CAK06861.1| putative transmembrane protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 388

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 104/350 (29%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     P+  A+++G            K        A I + S
Sbjct: 54  WAIIGIFGILFLAAVYLMSLILIPITLAVVVGMILGMAAEKLS-KMGVPRLANAFILSSS 112

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  + +  L    M    E  +         +P    +  +       E  +  +  
Sbjct: 113 VALVIFLLINSLADPLMTLANEGPAFAERTINRVMPYLERIRWLHITPATFESGSMSIGA 172

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + TN    + +    F  +       +      +  F      ++    
Sbjct: 173 LLENTGNVLHVVTTNLTPALVQGLIFFAALLFFLAGRVNLRKTIIMTFRTRTQRLAA--- 229

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I +G G+V+    +  G+ + V  G    
Sbjct: 230 -----------IRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYAGGLSAPVLWGFFAF 278

Query: 250 IMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP       T       +L    +               +++  + P ++G  +++
Sbjct: 279 VSSFIPYLGITLMTLAVAVAGILTHDGLLIGLMPAAAFFTVHLLMENLIFPAVMGRRLEI 338

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  +  E ++  K   +   
Sbjct: 339 NPFVVFLAILFWTWMWGAVGAMLALPLSLIVMTVIDELLIEEKPQPQLPK 388


>gi|2281317|gb|AAC45502.1| OrfB; similar to a Streptococcus pneumoniae putative membrane
           protein encoded by GenBank Accession Number X99400;
           inactivation of the OrfB gene leads to UV-sensitivity
           and to decrease of homologous recombination (plasmidic
           test) [Lactococcus lactis subsp. cremoris MG1363]
          Length = 301

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 74/254 (29%), Gaps = 5/254 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           F+     PV+ A +  +   PI      ++        ++  + +  L    L+      
Sbjct: 53  FITVISLPVILAAVFYYLLNPIVDFLEKRRV-PRVLTIIVLFLIIAALIAWGLIVAIPNV 111

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  +    S V             L+  P          +      +  I        N 
Sbjct: 112 ISGVDNFASSVPHYVNTAQKEINALAKNPHFEQFRPQVDQFAKSIGNQLIDWSKTFSVNA 171

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +  +    S+   I +            LF+  RDG  ++  +  L  + +     K+  
Sbjct: 172 VTTLSHLISKTTSILISLI----VFPFVLFYLLRDGQRLNGFITHLLPNDWRKETSKVLH 227

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   + +   G  ++AI   ++      + G+   VAL +    + ++P          
Sbjct: 228 EINSQLSNYVRGQVLVAIAVAIMFMIGLPIIGLRYAVALAITAGFLNLVPFLGSFLAAIP 287

Query: 266 SIYLLIKGNIFNAT 279
            + + +        
Sbjct: 288 MVIVGLAIGGPLML 301


>gi|149186422|ref|ZP_01864735.1| hypothetical protein ED21_23073 [Erythrobacter sp. SD-21]
 gi|148830011|gb|EDL48449.1| hypothetical protein ED21_23073 [Erythrobacter sp. SD-21]
          Length = 392

 Score = 88.5 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/338 (11%), Positives = 100/338 (29%), Gaps = 17/338 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++   + F +   L      F PV++A+I+     P+           +   ++++ + 
Sbjct: 38  VLIGLGVFFALPFVLSIGSVVFLPVVTAIILTVILSPLADKLTG-LGLPNALSSLVSLLV 96

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + ++ L  +    +    EL        +    +    +                  
Sbjct: 97  FFAILLLALALILQPAITLFDELPDLFQQVGERFTELRNQFAW-------------VAQI 143

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + L  L +       +   P              +  I  ++  FF       + Q+L 
Sbjct: 144 NEQLAALVDRGEGREVVLATPSLLEEVAFATPTIVVETILTLLMAFFMIEARVRLRQKLL 203

Query: 190 -SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                        ++ R V   + +  L + +I  G G+V+    W  GV + +  G + 
Sbjct: 204 FGRTSFGTSIKAARVLREVQDRVAAYILTVGLINAGVGVVVALGAWALGVDAPIMWGGLA 263

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           AI+  +P   P     +     +     +               +    + P ++G    
Sbjct: 264 AILNFLPYIGPTIMIGLLALFGIGTTETVLLGLVPATAYLALHTVEANVITPSILGARFT 323

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +  +     L       G+ G  +   ++ ++  ++  
Sbjct: 324 MNPVMILIALSYFTWVWGIFGALLSVPILLMLTALFDH 361


>gi|209548467|ref|YP_002280384.1| hypothetical protein Rleg2_0864 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209534223|gb|ACI54158.1| protein of unknown function UPF0118 [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 388

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 108/350 (30%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     P+  A+++G            +        A + + S
Sbjct: 54  WAIIGIFGILGLAAVYLMSLILIPITLAVVVGMILGMAAEKLS-RMGVPRLANAFMLSSS 112

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  + +  L    M    E  +         +P    +  +       E     +  
Sbjct: 113 VALVIFLVINSLAGPLMTLANEGPAFAERTINRVMPYLERIEWLHITPATFESGPMSIGA 172

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + T+    + +    F  + L     +      +  F      ++    
Sbjct: 173 LLENTGNVLHVVTTSLTPALVQGMIFFAALLLFLASRVNLRKTIIMTFRTRTQRLAA--- 229

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I +G G+V+    +  G+ + V  G    
Sbjct: 230 -----------IRVINAVEQVLGFYFATASLIYVGLGVVMTVIAYAGGLAAPVLWGFFAF 278

Query: 250 IMAMIPGGAP--ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP      ++F      +L   +I               +++  + P ++G  +++
Sbjct: 279 LSSFIPYLGITLMTFAVAVAGILTHDDIVIGLMPAAAFFTVHLVMENLIFPAVMGRRLEI 338

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  I +E ++  K   +   
Sbjct: 339 NPFVVFLAILFWTWMWGAVGAMLALPLSLIVITIIEELLIEEKPQPQLPK 388


>gi|289446691|ref|ZP_06436435.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
 gi|289419649|gb|EFD16850.1| conserved membrane protein [Mycobacterium tuberculosis CPHL_A]
          Length = 311

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 3/276 (1%)

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           P+  L    ++++  +V  V    +   +                 +   H++       
Sbjct: 2   PVGALVGLAIVQIARMVDSVADWVRTTDLSTLGDKILQFVNGLFDRVPFLHITVTADALR 61

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +   +  N  +++  F             S I  +        +   +   +  L   L
Sbjct: 62  KAMISVAQNVGEWLLHFLRDAAGSLAGVITSAIIFVYVFVALLVNREKLRTLIGQLNP-L 120

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT-AIMAMI 254
                    + +  ++R T  G  +IA  +G+   ++ ++AG      +  I    +++I
Sbjct: 121 GEDVTDLYLQKMGSMVRGTVNGQFVIAACQGVAGAASIYIAGFHHGFFIFAIVLTALSII 180

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P G  I      I ++  GNI     + LW  + +  +D  LRP LV    +L       
Sbjct: 181 PLGGGIVTIPFGIGMIFYGNIAGGIFVLLWHLLVVTNIDNVLRPILVPRDARLNSALMLL 240

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            +  G+   G  G+ IGPVLM LI       +   K
Sbjct: 241 SVFAGITMFGPWGIIIGPVLMILIVTTIDVYLAVYK 276


>gi|312198285|ref|YP_004018346.1| hypothetical protein FraEuI1c_4483 [Frankia sp. EuI1c]
 gi|311229621|gb|ADP82476.1| protein of unknown function UPF0118 [Frankia sp. EuI1c]
          Length = 361

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/334 (14%), Positives = 106/334 (31%), Gaps = 21/334 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++    + +    +   +    P   AL++  T  P+ +    ++        V+   +
Sbjct: 19  ILLGMASLVVATAGVRAFRDTLGPAFLALVLVVTVHPLQARL-RRRGVPGWIGVVVVMAA 77

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +  +    L  L       +  L               RWL D+                
Sbjct: 78  IYAILAGLLAALVVSVARLVTLLPDYRPQFENLLHQGTRWLEDL---------------- 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  + T +    +  +     R          S++F++  +FF   D  S +++LD
Sbjct: 122 -GVQPEQASTAIGRLDLSKLSGVLQRILSGLTSAGSSLVFLVTLVFFLAIDCESFTRRLD 180

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +             R   +  R      T+  +    +   A     VP  +  G+++ 
Sbjct: 181 VVAG--SRPLLVAALRDFARNTRRYLAVSTLFGLIVAALDVLALQWLAVPLPLLWGLLSF 238

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I   IP    +        L L++G +     + +  ++   +V   ++P +VG  ++L 
Sbjct: 239 ITNYIPNIGFVVGLVPPALLGLLEGGVVRMIWVVVVYSVVNMVVQSFIQPKVVGNVVRLS 298

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  LV     +G LG  +   +  L   + 
Sbjct: 299 ATLTFLSLVFWAFVLGPLGALLAVPMTLLAKALL 332


>gi|327191355|gb|EGE58384.1| putative transmembrane permease protein [Rhizobium etli CNPAF512]
          Length = 389

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 103/350 (29%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     P+  A+++G        +   K        A + +  
Sbjct: 55  WAIIGIFAILGLAAVYMMSLILIPITLAVVVGMILGIAAENLS-KMGVPRLANAFLLSSG 113

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  +    L         E  + V       +P    +  +       E     +  
Sbjct: 114 VALVIALLANSLAGPLATLANEAPAFVERTITRIMPYLERIEWLHITPATFESGPMSIGA 173

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + T+    + +    F  + L     +      +  F      ++    
Sbjct: 174 LLENTGSVLHVVTTSLTPALVQGLIFFAALLLFLASRVNLRKTIIMTFRTRTQRLAA--- 230

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I IG G+V+    +  G+ + V  G    
Sbjct: 231 -----------IRVINGVEQVLGFYFATASLIYIGLGVVMTVIAYAGGLSAPVLWGFFAF 279

Query: 250 IMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP       T       ++                    +++  + P ++G  +++
Sbjct: 280 LSSFIPYLGITLMTLSVAIAGIITHDGFVVGLMPAAAFFTVHLVMENIIFPAVMGRRLEI 339

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  + +E ++  +   +   
Sbjct: 340 NPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTVIEELLIEERPQPQLPK 389


>gi|299538077|ref|ZP_07051362.1| hypothetical protein BFZC1_18760 [Lysinibacillus fusiformis ZC1]
 gi|298726279|gb|EFI66869.1| hypothetical protein BFZC1_18760 [Lysinibacillus fusiformis ZC1]
          Length = 350

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 96/339 (28%), Gaps = 23/339 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----FISKKEESSTFLAV 64
            G  R++I+  I ++LY ++     +L   II +    + +            +   + V
Sbjct: 8   NGFKRFIILVGIALALYLMRSMINLILLTFIITYLMNQLTTKTTKSIRKYTPMNEKAVTV 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              + ++   +  +         ++ +L   +   N           +      A     
Sbjct: 68  TLYLLLVAGIVAVIYKYLPIVTQQITQLFDLIASFN------LDPDDNEIARYLAPTFEK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L       +       TN    I +      +           +     F       +
Sbjct: 122 IELGKYLEQGVDLTLKNITNIGKIIMQILISLILSLFILLEKNRIIEFTAKFKDSKIGPL 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L                               IIA    ++   A  + G P  +AL
Sbjct: 182 YDELHYFSRIFIR------------SFGKVIEAQFIIAAVNCVLSVIALSIMGFPHLIAL 229

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  I+ ++P    I        +    G +     + +   +   I    L P L+  
Sbjct: 230 GIMLFILGLVPVAGVIISLIPLSIIAYSIGGLMYIVYILVIVMVLHAIEAYFLNPKLMSA 289

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP   TF  ++     +G+ GL IG  L   +  I 
Sbjct: 290 KTDLPIFYTFMVILFSEHFLGVWGLIIGIPLFMFLLDIL 328


>gi|148544961|ref|YP_001272331.1| hypothetical protein Lreu_1755 [Lactobacillus reuteri DSM 20016]
 gi|184154298|ref|YP_001842639.1| hypothetical protein LAR_1643 [Lactobacillus reuteri JCM 1112]
 gi|325683306|ref|ZP_08162822.1| hypothetical protein HMPREF0536_11744 [Lactobacillus reuteri
           MM4-1A]
 gi|148531995|gb|ABQ83994.1| protein of unknown function UPF0118 [Lactobacillus reuteri DSM
           20016]
 gi|183225642|dbj|BAG26159.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|324977656|gb|EGC14607.1| hypothetical protein HMPREF0536_11744 [Lactobacillus reuteri
           MM4-1A]
          Length = 372

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 117/361 (32%), Gaps = 24/361 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY------FLKGFF---APVLSALIIGFTSWPIYSSF 51
           M++ +      +   +  + L   Y      F++  F    P+L   I+ +    +   +
Sbjct: 1   MKQYINRRHISLVLALFVLYLAITYWEIVAKFIQTIFSATVPLLIGAILAYIVNLLLKQY 60

Query: 52  ISKK----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
                         +       +++ ++++ +  V    +    +  +K L++       
Sbjct: 61  EHLYLSLFKKPSAQKFKRPVGIMMSYLTIILIIAVVFALVIPELITCVKLLIANHSHIIN 120

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           H I      SD  G + + +                        I       S      +
Sbjct: 121 HFIDYFEHSSDFKGFINSFDASKIQWDKIGKYLTSGVGGTFRTVISTASSVFSAATTAII 180

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            +  SI  +I       +    +S          +     ++ ++  +   +  +G    
Sbjct: 181 AFFFSIYLLIYKEMLQRQFTKLLSTYFSR-----YQTQIIRVLKVFDESYSNYIIGQCKD 235

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A   G+       +  +P    +GV+TA  A+IP    I   +V + ++   +   A   
Sbjct: 236 AAILGISCFIGMTILRMPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIF 295

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++  +   + ++   P +VG  I LP +  F  ++ G    G+LG+     L A +  +
Sbjct: 296 LIFIILLQQLDNRITYPLVVGRSIGLPSVWVFAAVIIGGGISGILGMMFTVPLFAALYKL 355

Query: 342 W 342
            
Sbjct: 356 L 356


>gi|227545346|ref|ZP_03975395.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300908574|ref|ZP_07126037.1| protein of hypothetical function UPF0118 [Lactobacillus reuteri
           SD2112]
 gi|227184628|gb|EEI64699.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300893981|gb|EFK87339.1| protein of hypothetical function UPF0118 [Lactobacillus reuteri
           SD2112]
          Length = 370

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 120/361 (33%), Gaps = 24/361 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY------FLKGFF---APVLSALIIGFTSWPIYSSF 51
           M++ + +    +   +  + L   Y      F++  F    P+L   I+ +    +   +
Sbjct: 1   MKQYINHRHISLVLALFILYLAITYWEVVAKFIQTIFSATMPLLIGGIVAYIVNLLLRQY 60

Query: 52  I----------SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
                      S ++       +++ ++++ +  +    +    +  +K L++       
Sbjct: 61  EYLYSHLFKKPSLQKFKRPVGIIMSYLTILLIITIVFALVIPELITCVKLLIANHSHIIN 120

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           H I      SD  G + + +                        I       S      +
Sbjct: 121 HFIDYFEHSSDFKGFINSFDTSKIQWDKIGKYLTSGVGGTFRTVISTASSVFSVATTAII 180

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            +  SI  +I       +    +S          +     K+ ++  +   +  +G    
Sbjct: 181 AFFFSIYLLIYKEMLQRQFTKLLSTYFSR-----YQTQIIKVLKVFDESYSNYIVGQCKD 235

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A   G+       +  +P    +GV+TA  A+IP    I   +V + ++   +   A   
Sbjct: 236 AAILGISCFIGMTILRMPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIF 295

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++  +   + ++   P +VG  I LP +  F  ++ G    G+LG+     L A +  +
Sbjct: 296 LIFIILLQQLDNRITYPLVVGRSIGLPSVWVFAAVIIGGGISGILGMMFTVPLFAALYKL 355

Query: 342 W 342
            
Sbjct: 356 L 356


>gi|87303608|ref|ZP_01086387.1| hypothetical protein WH5701_10684 [Synechococcus sp. WH 5701]
 gi|87281832|gb|EAQ73796.1| hypothetical protein WH5701_10684 [Synechococcus sp. WH 5701]
          Length = 358

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/333 (12%), Positives = 94/333 (28%), Gaps = 11/333 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +++        +G  +  + A +I             +      +         +
Sbjct: 19  LVVLNLWVFGSLYRAFEGIASTFILAGVIALILNLPVRLLQRRLGLPRGWAIGSVFGLFL 78

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + ++    L    ++        +             +S     +      +  +    
Sbjct: 79  GVAVLAAATLLPLLVVRFLTFTQVLPQWITETGDNLSSISGRVNALGVPIDTSVIIRGMA 138

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +        +  N   FI      F  +F    L+I       FF    G  +   L S 
Sbjct: 139 ANLTAQLESVLLNIPGFISGSLGSFFSLFFLLVLTI-------FFLIYGGELVRNCLVSW 191

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     ++  ++ +   S      +++      L  A  L   P  +  GV   +M
Sbjct: 192 LP---QDQGLRVLSVLRRNFNSYIFNQLVLSAVLISALTPALLLLRAPFPILSGVTIGLM 248

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP    I    +   L +  + +    +F    +   +++  L P L+G    L  + 
Sbjct: 249 GFIPF-GAILGILLVSALFMLKSFWLGLRIFAVLIVVDQVIENVLPPRLLGKLTGLNPIV 307

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             F ++ G       G+     + A I  +  E
Sbjct: 308 ILFSVMVGATLADFYGVITAVPIAATIKALLLE 340


>gi|150398999|ref|YP_001322766.1| hypothetical protein Mevan_0245 [Methanococcus vannielii SB]
 gi|150011702|gb|ABR54154.1| protein of unknown function UPF0118 [Methanococcus vannielii SB]
          Length = 336

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 124/337 (36%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  +    L  ++    F   +  A    + S P Y +         T  A+I  +
Sbjct: 7   RFIMRIFVFITFLAVIFTAWPFLDTLAFACAFSYMSKPFYDAIRKFTG--RTLGALICIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    I  LLF+    +  +  L         + + +   +++    +    +  K L+
Sbjct: 65  IITIPAIFLLLFIISDVINFLNTL---------NFLEIIENVTNFLTYLGLQNIAKKDLT 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S   +            + R             + I+  +   ++F +DG +    +
Sbjct: 116 PVISELWIFLRPTINMMASQLYRL--------PLLFIKILITVFLTYYFLKDGHNFKGAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +     + +  ++ F+G  + +   G++    +W  G+P+ V LG ++
Sbjct: 168 MPHVPDVYAPQTELFMENLHEAYKNLFVGNALTSFTVGIISIIGFWAMGLPNPVTLGALS 227

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P     +    + ++ +  G    A  LF +G + L +  D  +RP +V     
Sbjct: 228 GILTLLPVVGGWTIYMPLCLFYIATGMYLKALLLFGFGVLFLSLAPDFVIRPSIVSNESD 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP+++     I++
Sbjct: 288 IHPALLLIAFLMGPLALGITGFALGPIIVGTFDAIFR 324


>gi|324325982|gb|ADY21242.1| hypothetical protein YBT020_09980 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 337

 Score = 88.1 bits (217), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 112/341 (32%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++      + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIVLIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|224502735|ref|ZP_03671042.1| hypothetical protein LmonFR_09479 [Listeria monocytogenes FSL
           R2-561]
          Length = 346

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|218247456|ref|YP_002372827.1| hypothetical protein PCC8801_2670 [Cyanothece sp. PCC 8801]
 gi|218167934|gb|ACK66671.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8801]
          Length = 345

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 94/311 (30%), Gaps = 13/311 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLAVIATVSVMC 72
           + I    L+ ++     V +A+I       + +  ++      + +     +I+ + ++ 
Sbjct: 12  LVISGYILWEIRQLLLLVFTAIIFATALNRLINRLLTWQFRGVKLTRNLAILISLIGILF 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L I+  L +    + +   L+  +    +        L                    + 
Sbjct: 72  LTILFFLLIVPPFLEQFDNLIKLLPTIWERLRATVILLVQKQSHFDWLPPPPSLKDLIEQ 131

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                           I +    F    +   + ++F+++       +     +    L 
Sbjct: 132 ---------SQPLFTQIFKNFFAFFSNSVVAIIQLLFVLVLTVMMVINPQLYRKGFLKLF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +     +I  +    + +   G+ I  +   ++ G   W+  V   +   ++  ++ 
Sbjct: 183 PSFYRHRVDEIFTLSEIALGNWLTGIMINCLFIAILSGVGLWILQVKLVLVHALLAGLLN 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP   P +     I + +    +    + +W  I   I    L P ++   + L    T
Sbjct: 243 FIPNIGPAASVVFPIMVAVLDEPWKIWVILIWYFIIQNIESYWLTPTVMAKQVSLLPAIT 302

Query: 313 FFGLVGGVRTM 323
               +   ++ 
Sbjct: 303 LMAQIFFAQSF 313


>gi|332180915|gb|AEE16603.1| protein of unknown function UPF0118 [Treponema brennaborense DSM
           12168]
          Length = 357

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 95/334 (28%), Gaps = 18/334 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++ ++   I    L        PV  A+++ F   P+ ++   +          I    +
Sbjct: 13  LLLFICAVITGTLLKITASVVIPVTVAVLLAFVFQPLIAALNKRFHIP----VGIGITII 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  V +L +        K + +      +    +   ++ I    +  E         
Sbjct: 69  FVILFVAMLVIGNLLFSSFKTIFALYPKYEERLTVIYETVATIFKLPFDEETSLFENLWG 128

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           Q                 I   A     I + +  ++  + + + FF  +      +   
Sbjct: 129 QL-----------GIRTAIQNAAVSLSNILIAFVKNLTVVSLFVIFFLAELRLFKTKAAV 177

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
             +         I + +   +         I++  G+++        +   +  G +  I
Sbjct: 178 AFDGQNSGKITLIIKDIILQVTRYISVKFFISLLTGVLVFLGTLAVHMDFPIVWGFLAFI 237

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFN---ATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           +  IP    I    ++    +            +         I+   + P + G  + L
Sbjct: 238 LNFIPNFGSIISGLITTLFALIQFWPKPGPVVFVGFLMIAVNMILGNIVEPRIQGRNLGL 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                   L       G +G+ +   +M ++ +I
Sbjct: 298 SPFVIIVSLSVWGWMWGFMGMLLAVPMMVILKII 331


>gi|110637635|ref|YP_677842.1| permease [Cytophaga hutchinsonii ATCC 33406]
 gi|110280316|gb|ABG58502.1| conserved hypothetical protein; possible permease [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 366

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 132/345 (38%), Gaps = 7/345 (2%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   +   ++      +  F + +L  +I+   + PI +   ++   S  + AV+ T
Sbjct: 17  ETAIRLVLFFGLMFFCYIIMMPFVSILLGGIILAVAASPILTLLRNRFNLSDKWGAVLIT 76

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + +FIVP   L +  + E    +S           +   L  +P        + K+L
Sbjct: 77  CVALIVFIVPSYLLIHSLIREFTHFIS--PENRAAVTGMIENLRGLPLIQDTLYEFLKNL 134

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           ++  S+               +  F    G+  + +  S+I   +    F       +  
Sbjct: 135 TNNSSVVFKEHATQIEAVGIGVLGFIGGLGLGLVHFLASVIIAGL----FLAHAKQSAGL 190

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            + +   +     ++ S I  + I++   G+  +A  E ++    +++AGVP      V+
Sbjct: 191 AEKIFIRIAGKNGEEFSHITERTIQNVTKGIIGVAFLESVLAAFGFFVAGVPLAGVWTVV 250

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +++++  G       + IY+   G+   A+ L  W  +        ++P L+     +
Sbjct: 251 CLLLSIVQLGIVPLAVPIVIYMFYTGSPVTASLLAAWMVLIYIFE-HLMKPILLSKGAPV 309

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P    F G+VGG    G +G+F+G VL ++   ++   +    + 
Sbjct: 310 PMPIIFIGVVGGFIAGGFIGMFLGAVLFSIAYKLFLVWLENDVQK 354


>gi|153009777|ref|YP_001370992.1| hypothetical protein Oant_2449 [Ochrobactrum anthropi ATCC 49188]
 gi|151561665|gb|ABS15163.1| protein of unknown function UPF0118 [Ochrobactrum anthropi ATCC
           49188]
          Length = 338

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 102/335 (30%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
              +  +   +++  L++    FAPV+ AL I    WP+     S    S     VI  +
Sbjct: 6   NATLILIAGCVLIALLHYGGAVFAPVVFALFIIMLVWPVQRGLSSLM--SRYLALVITFL 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ L +     L +      + ++   V        +  WL                  
Sbjct: 64  LVVFLLLGFGWLLAWTVGQVGRRILIDAVRYQLLYEQLKIWLEGHGIAASVL-------- 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                      + +   + +  R     G    +     +  ++ +     +      ++
Sbjct: 116 -----------WSENFSVSWTLRMLQSIGSRLNNTFSFWLVALVYVLLGLAETDEFRARI 164

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L        + + S+     IR   L   ++++  G  +     L G+P     G + 
Sbjct: 165 KQLKNQEAANSFLRASQSAATKIRFYMLLRALMSLATGSFVWLLTRLIGLPFAETWGFVA 224

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            I+  IP   P+  T            +      +F+   I   ++   + P L G  I 
Sbjct: 225 FILNFIPFLGPLVATLFITAFAFTHFASWQWVLAVFVGLNIIQSVIGSVIEPRLTGKTIS 284

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           L    T F +       G+ G FIG  +  +    
Sbjct: 285 LSPFATLFSVFAWGSLWGVFGAFIGVPITIVALTF 319


>gi|302815027|ref|XP_002989196.1| hypothetical protein SELMODRAFT_427799 [Selaginella moellendorffii]
 gi|300143096|gb|EFJ09790.1| hypothetical protein SELMODRAFT_427799 [Selaginella moellendorffii]
          Length = 726

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/329 (10%), Positives = 86/329 (26%), Gaps = 52/329 (15%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R  +   + + L+ L+ F   ++  +++        S           FL     V +
Sbjct: 436 IKRVCVWATVALVLFQLRDFVGVIMGTIVLSMIGNTFISWAEEYLPGRRRFLIATMYVVI 495

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +     +      + E   ++ ++                            +  +  
Sbjct: 496 IAVLTGLGIMYIPRLLQEGANIIGRIQ---------------------LFNFLQQSENPY 534

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L    ++ L  N  D + RF              +    +       +    S     
Sbjct: 535 SLLSEKLKSALGENVTDQLERFLLAV----------MRPDSVVRESMAGNTAQRSIIFQQ 584

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           L +    A    ++ ++    R      + +++    +                     I
Sbjct: 585 LIKEYSGAMVAWLATLISATSRFAL--QSFVSLIFSFLFVWDAPSVK----------AVI 632

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           ++ +P G         I   ++      + + L   +   +    L P +    +KL  L
Sbjct: 633 ISTVPIG---------IVAFVETGFLQLSLVVLMVILIHALEAYVLNPAIYSAHLKLHPL 683

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                LV     +G+ GL     +     
Sbjct: 684 LALGVLVFAEHALGVWGLIAAVPMAVFFI 712


>gi|229011253|ref|ZP_04168446.1| UPF0118 membrane protein [Bacillus mycoides DSM 2048]
 gi|228750136|gb|EEL99968.1| UPF0118 membrane protein [Bacillus mycoides DSM 2048]
          Length = 339

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 114/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++   +  L        +++ +L+ +  L  QH                    
Sbjct: 65  IACLYIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEMIRYVLSAINEMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|229059620|ref|ZP_04196998.1| UPF0118 membrane protein [Bacillus cereus AH603]
 gi|228719633|gb|EEL71232.1| UPF0118 membrane protein [Bacillus cereus AH603]
          Length = 339

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 115/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+++ LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++   +  L        +++ +L+ +  L  QH                    
Sbjct: 65  IACLYIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEMIRYVLSAINEMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|42523616|ref|NP_968996.1| hypothetical protein Bd2150 [Bdellovibrio bacteriovorus HD100]
 gi|39575822|emb|CAE79989.1| putative membrane protein [Bdellovibrio bacteriovorus HD100]
          Length = 345

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 101/313 (32%), Gaps = 5/313 (1%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            F  P+  A +             +K        ++I  +  MCLF++PL    Y  ++ 
Sbjct: 30  PFLMPLTLAGVFALGLNDWIEKLSAKGRLGRKSWSLIFMLLGMCLFLIPLSLAIYRIVV- 88

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
                S+        I                +L     +            +       
Sbjct: 89  ---YASQPKNIETDQILSQAHNLKNYAINMLQKLSDFTGTDLAGPAREVMENVLHKIGSG 145

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
              ++++F        L I   +I++         I +        L     +K+  I  
Sbjct: 146 AIEYSTQFLGQLPVILLMIFVFLISMTVMLMKAPGIKEFTLRYSP-LKADTTEKLIVITK 204

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           K    T     +I + +  ++G+   + G      +  +T  ++ IP         +   
Sbjct: 205 KSCWLTLFSTLVIGLIQASLIGAGSLIFGEGDFWLVLTVTFFVSFIPVIGAAPVGYLLCV 264

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           L   G+   A       A     +D  L+PF +GG   +  +  F  +VG +  MGL GL
Sbjct: 265 LAFIGDRTGAAIGLFIVATIAGSIDNILKPFFIGGDQDISPVIGFTCVVGAIIMMGLPGL 324

Query: 329 FIGPVLMALIAVI 341
            IGPV+M L   I
Sbjct: 325 LIGPVVMNLFVGI 337


>gi|169350364|ref|ZP_02867302.1| hypothetical protein CLOSPI_01131 [Clostridium spiroforme DSM 1552]
 gi|169293147|gb|EDS75280.1| hypothetical protein CLOSPI_01131 [Clostridium spiroforme DSM 1552]
          Length = 361

 Score = 87.7 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 103/332 (31%), Gaps = 16/332 (4%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  L  +     P +    I F   P  +      +       ++  ++V  + I+ +L 
Sbjct: 43  IGLLNMIWLVSRPFIVGFTIAFVLNPFINFIDKYLK-KRAVSVILTYLAVFTILILIILL 101

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +       + E+        +      +   +       S +                  
Sbjct: 102 VIPLIYESIFEMYPTFNAGLKEIGRFIQNNFNYDISSLTSYIEKSVYQFFND-------- 153

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                   +           L    + I  +I   +      SI Q + ++         
Sbjct: 154 ------PTVLDATIDVLNQVLVNLTNFIIYVILAIYMSNIFNSIRQTIKNIA-IKIDCNL 206

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
               + +   +        I AI + +     Y L G P+ + LGV++ + ++IP   PI
Sbjct: 207 PIYLKEIDLSLVQYVKAFFIGAIAQAITTMIMYVLIGHPNWLILGVVSGVSSIIPYVGPI 266

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + +   +         L +   I+  ++   + P +    I L  L   FG++ G 
Sbjct: 267 IANCLGLITSLGMQSSTIIFLCILIFIQSIVMSYIITPRIYSSRIDLSILWVLFGILSGS 326

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              G++G+ I   L+  I +I++      ++ 
Sbjct: 327 SLFGIVGMIIAMPLLVSIKIIYQVYKEHHQDK 358


>gi|20091716|ref|NP_617791.1| hypothetical protein MA2895 [Methanosarcina acetivorans C2A]
 gi|19916893|gb|AAM06271.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 372

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 95/326 (29%), Gaps = 19/326 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                ++  ++  + + PI   F           A+IA++ +    +  +       + +
Sbjct: 39  PLADGIVLGIVFAYIARPIQVKFGKY----RKIGALIASLFIFIPIVFIVGAGVVEILNQ 94

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  +           +     L                 ++ + +         +     
Sbjct: 95  ISWIFENQTSVMSGILDFIHGLE-------------IPSTYVERINNAIWNLFTSLLPAV 141

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                  +      + ++ I  I   +F   DG  +      +    +     + +  + 
Sbjct: 142 GSVGLISYAQSIGLFVINFIVSIFFCYFLLADGDRLYCAFIGMIPSDYQNIVNRYASHLD 201

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            +++  F+G    A+   +     +   G    +AL  +  I ++IP  A          
Sbjct: 202 LILKGVFIGNAYSALIVSVTSVFVFRAFGFSHVLALATLVFIASVIPLFAGYMVLVPMAL 261

Query: 269 --LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                +G    A    +   +     +  LRPFL     K+  +      +GG    G+ 
Sbjct: 262 FRYFEQGFQSAALFFVVSSLVIYGPPELILRPFLTSLKSKIHPMLLMLAFLGGAFVGGIA 321

Query: 327 GLFIGPVLMALIAVIWKESIMAIKEN 352
           G F  P+L+  +   ++     I   
Sbjct: 322 GFFAAPILLGALVAAYRVYQEQIHPE 347


>gi|22299092|ref|NP_682339.1| hypothetical protein tlr1549 [Thermosynechococcus elongatus BP-1]
 gi|22295274|dbj|BAC09101.1| tlr1549 [Thermosynechococcus elongatus BP-1]
          Length = 379

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/309 (9%), Positives = 86/309 (27%), Gaps = 11/309 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++ + L  L+ ++     V  A+++      +     S           ++     
Sbjct: 7   IGLLVLGVCLYILWEIRQVLLLVFLAVVLATALNWLQLRLQSW-GLQRGRAIALSMSLTF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +       +    + E ++L   +             ++         +    +    Q
Sbjct: 66  LIIFGFFWMMIPPFLQEAQQLGVLIPKGLGRVEAWLDDMAHFLPSGGFDDTPMINRLITQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         +  I           L   L+ + +++       D     +    L
Sbjct: 126 ----------LEPFLQQIFNNFFALFSNTLALLLNTLLVLVLTVMLVIDPQPYRRGFIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               + +    I R   + + +   G  +  +  G+V G    L GV   +A   +  ++
Sbjct: 176 FPAFYRSRIDTILRESEQALLAWLAGTGLNMVVIGVVSGLTLALLGVRLVLANAFLAGLL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
             IP   P       + +    + + +  + +   +   +    L P ++   + L    
Sbjct: 236 EAIPNIGPALSVIPPMIIAFIDDPWRSVAVLMSYILIQQLEQYLLVPLVMAKQVALLPAV 295

Query: 312 TFFGLVGGV 320
           T    +   
Sbjct: 296 TLVSQIIFA 304


>gi|313675599|ref|YP_004053595.1| hypothetical protein Ftrac_1497 [Marivirga tractuosa DSM 4126]
 gi|312942297|gb|ADR21487.1| protein of unknown function UPF0118 [Marivirga tractuosa DSM 4126]
          Length = 346

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/347 (12%), Positives = 99/347 (28%), Gaps = 15/347 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
                ++  +++ +I  SL  L   F P++ A+ I     P+      +K          
Sbjct: 7   STTNKLLLVLVIPVIFYSLQLLSFIFIPLMFAIFIALLFTPMMRWMKKRKVPQ------- 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                +   I+ L    +  +  ++    ++               +     +A  L   
Sbjct: 60  --FIALGTVILILTLTGFSAIKIVQMSGKQIEEGKSEIFKKLDNKVEQVVTPFAETLGLD 117

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +   ++K L ++    + I         F    +   L  +F ++ L     +   I 
Sbjct: 118 QNNGDSTIKGLLKSDKIESFILDNFTITISFIQSTVVNILMTLFFLMLLLAGSLNFKDIL 177

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q               K    V + +         ++   G+  G   W  G+   +  G
Sbjct: 178 QSTL----FSGGTQSVKTFMKVERSVSDFLKVKIFVSFLTGVSFGVIAWSLGISFPLFWG 233

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++  ++  +     +  T + +        +        +       +    L P  +G 
Sbjct: 234 LLAFVINFVQMVGSVVSTILVMLFAFIEIESPGTLLLAAILFTGAQILFGAVLEPIFMGR 293

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
              +  +     L+      G+ GL +   L  L   I  E     K
Sbjct: 294 SFSINIIVVLVMLMFWGFIWGVPGLILSIPLTVLFKTILNEFPGGKK 340


>gi|302538382|ref|ZP_07290724.1| predicted protein [Streptomyces sp. C]
 gi|302447277|gb|EFL19093.1| predicted protein [Streptomyces sp. C]
          Length = 369

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 77/308 (25%), Gaps = 15/308 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  + ++ +   L         +   L++     P             +    +  V
Sbjct: 17  RLLVVGVAVYAVFSLLGRFHEIGVALFLGLVVTALLSPPTRGLAR--ILPRSAAVAVTLV 74

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L +  L  +      E   LV +                             +   
Sbjct: 75  GSTVLLLGILALVGEAVAGESATLVREFREGLVSIEKWLER------------PPFRLDP 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +          +     +   A       +     +   + +  FF   G       
Sbjct: 123 GALTGLQAKIGEYLSTHRSTLLSTAVSGAGHVVQVLTVLALAVFSSVFFLHGGGRQWAWF 182

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +                  +       G+ ++A    +++G A +  GVP  V L ++ 
Sbjct: 183 CAQLPERARGRTALAGTAAWRTFTGYTHGIVLVAGTNAVLVGVALYFLGVPLAVPLALLE 242

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              A +P    P++    ++  L       A  +     +   I    L P ++   ++L
Sbjct: 243 FFAAFVPLVGSPVALAVAAVVALAARGPVIAAVVIALIVVIGQIEGHLLHPLVMSWAVRL 302

Query: 308 PFLPTFFG 315
             L     
Sbjct: 303 HPLVVAVS 310


>gi|16800526|ref|NP_470794.1| hypothetical protein lin1458 [Listeria innocua Clip11262]
 gi|16413931|emb|CAC96689.1| lin1458 [Listeria innocua Clip11262]
          Length = 345

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 99/339 (29%), Gaps = 19/339 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + +   +        ++ +LV       +                  +E   
Sbjct: 67  LLYVLIAGVIVFVFVKYIPVLADQINQLVKFGNSFLKT--------------DSNNEFIN 112

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +S      I+  T    + I           M      +  +F  +            
Sbjct: 113 YIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKDHLISFTNQF 172

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S               K                  IIA+   ++   A W+ G P  + L
Sbjct: 173 STSKIGFIY----EEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLMTL 228

Query: 245 GVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  ++ +IP    I     ++I     G +     + +   I   +    L P L+  
Sbjct: 229 SIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLMSA 288

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 289 KTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|319947777|ref|ZP_08021976.1| hypothetical protein ES5_00632 [Dietzia cinnamea P4]
 gi|319438554|gb|EFV93475.1| hypothetical protein ES5_00632 [Dietzia cinnamea P4]
          Length = 375

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 108/323 (33%), Gaps = 20/323 (6%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  +        P   AL +   + P+    + +         +I  + +  L    +  
Sbjct: 37  IWGISEHASLLMPAFLALNLVIAAQPL-QRLLQRAGLPRWGAMIIVLLVLYLLLAALVGM 95

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L +   +       ++       + +     ++ GG   S+          SL+ + +  
Sbjct: 96  LVWALWV----AAEEIPQYQDKFVALYEQSLELLGGFGVSQ-----DQVASSLQGVLDPG 146

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
                +  +    S  G       +++ F++  +   +R   +I++Q   L         
Sbjct: 147 TIIGTVQNVAGQLSAAGGQLTVLIIALTFLVFDIPGIFRRRAAIARQRPRLA-------- 198

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                     ++S ++  T+  +   ++   A W+ GVP  +  GV+  +   IP    +
Sbjct: 199 -DALGSFTDGVKSYWIVSTVFGLIVAVMDAVALWILGVPLALVWGVLAFVTNYIPNIGFV 257

Query: 261 SF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                 +++ L+ G   +A  + +  +    ++   ++P   G  + L    TF  LV  
Sbjct: 258 LGLVPPALFALLTGGPGDAIWVVVIYSAINLVMQSFIQPKFTGDAVGLTPTVTFLSLVFW 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIW 342
               G LG  +   L  ++    
Sbjct: 318 SAVAGPLGAILAVPLTLMVKAFL 340


>gi|227364101|ref|ZP_03848200.1| permease [Lactobacillus reuteri MM2-3]
 gi|227070891|gb|EEI09215.1| permease [Lactobacillus reuteri MM2-3]
          Length = 368

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/361 (13%), Positives = 117/361 (32%), Gaps = 24/361 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY------FLKGFF---APVLSALIIGFTSWPIYSSF 51
           M++ +      +   +  + L   Y      F++  F    P+L   I+ +    +   +
Sbjct: 1   MKQYINRRHISLVLALFVLYLAITYWEIVAKFIQTIFSATVPLLIGAILAYIVNLLLKQY 60

Query: 52  ISKK----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
                         +       +++ ++++ +  V    +    +  +K L++       
Sbjct: 61  EHLYLSLFKKPSAQKFKRPVGIMMSYLTIILIIAVVFALVIPELITCVKLLIANHSHIIN 120

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           H I      SD  G + + +                        I       S      +
Sbjct: 121 HFIDYFEHSSDFKGFINSFDASKIQWDKIGKYLTSGVGGTFRTVISTASSVFSAATTAII 180

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            +  SI  +I       +    +S          +     ++ ++  +   +  +G    
Sbjct: 181 AFFFSIYLLIYKEMLQRQFTKLLSTYFSR-----YQTQIIRVLKVFDESYSNYIIGQCKD 235

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A   G+       +  +P    +GV+TA  A+IP    I   +V + ++   +   A   
Sbjct: 236 AAILGISCFIGMTILRMPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIF 295

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++  +   + ++   P +VG  I LP +  F  ++ G    G+LG+     L A +  +
Sbjct: 296 LIFIILLQQLDNRITYPLVVGRSIGLPSVWVFAAVIIGGGISGILGMMFTVPLFAALYKL 355

Query: 342 W 342
            
Sbjct: 356 L 356


>gi|257061208|ref|YP_003139096.1| hypothetical protein Cyan8802_3434 [Cyanothece sp. PCC 8802]
 gi|256591374|gb|ACV02261.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 8802]
          Length = 345

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 32/311 (10%), Positives = 93/311 (29%), Gaps = 13/311 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLAVIATVSVMC 72
           + I    L+ ++     V +A+I       + +  ++      + +      I+ + ++ 
Sbjct: 12  LVISGYILWEIRQLLLLVFTAIIFATALNRLINRLLTWQFRGVKLTRNLAIFISLIGILF 71

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L I+  L +    + +   L+  +    +        L                    + 
Sbjct: 72  LTILFFLLIVPPFLEQFDNLIKLLPTIWERLRATVILLVQKQSHFDWLPPPPSLKDLIEQ 131

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                           I +    F    +   + ++F+++       +     +    L 
Sbjct: 132 ---------SQPLFTQIFKNFFAFFSNSVVAIIQLLFVLVLTVMMVINPQLYRKGFLKLF 182

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
              +     +I  +    + +   G+ I  +   ++ G   W+  V   +   ++  ++ 
Sbjct: 183 PSFYRHRVDEIFTLSEIALGNWLTGIMINCLFIAILSGVGLWILQVKLVLVHALLAGLLN 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP   P +     I + +    +    + +W  I   I    L P ++   + L    T
Sbjct: 243 FIPNIGPAASVVFPIMVAVLDEPWKIWVILIWYFIIQNIESYWLTPTVMAKQVSLLPAIT 302

Query: 313 FFGLVGGVRTM 323
               +   ++ 
Sbjct: 303 LMAQIFFAQSF 313


>gi|16802989|ref|NP_464474.1| hypothetical protein lmo0949 [Listeria monocytogenes EGD-e]
 gi|47096236|ref|ZP_00233834.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|254832306|ref|ZP_05236961.1| hypothetical protein Lmon1_13209 [Listeria monocytogenes 10403S]
 gi|254898878|ref|ZP_05258802.1| hypothetical protein LmonJ_03655 [Listeria monocytogenes J0161]
 gi|254911633|ref|ZP_05261645.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254935959|ref|ZP_05267656.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|16410351|emb|CAC99027.1| lmo0949 [Listeria monocytogenes EGD-e]
 gi|47015381|gb|EAL06316.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258608547|gb|EEW21155.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|293589582|gb|EFF97916.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 348

 Score = 87.7 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|240103708|ref|YP_002960017.1| hypothetical protein TGAM_1651 [Thermococcus gammatolerans EJ3]
 gi|239911262|gb|ACS34153.1| Conserved hypothetical protein [Thermococcus gammatolerans EJ3]
          Length = 333

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 56/356 (15%), Positives = 127/356 (35%), Gaps = 28/356 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M N   I   + + I+ +    +    +P++ AL + + ++P++   + K         +
Sbjct: 1   MRNETLIWAIVTVVILYLVWLVVSPVVSPIILALAVAYVTYPLHEKLLPKIG-RRKAAFL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  +  F+  + F+ +                      +      I   M  S  W 
Sbjct: 60  LTAIIAVLSFLFLIGFVLW----------------------INDVKYQIVRYMEISFTWL 97

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + ++          T +       I  +   +        L I  M+   +    +   I
Sbjct: 98  QSVTVSSQRINEVLTAITEGVRSRIESYIVSYTYSIPKLALEIFVMLFVYYGALVNAEEI 157

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
            ++L +L       +  ++       + +       +++ +G      +W  G+      
Sbjct: 158 GRELYNLLPPQRKEFGIRLIEAARYTLDTLLKSWLTLSVLKGFATALGFWAFGIAPTSGA 217

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPF 299
           +ALG++TA + ++P           +  LI  + +    LF   +I     + D  L P 
Sbjct: 218 IALGILTAFVELLPFLGGWLIWIPGVVYLIHSSNYVLAFLFAVYSIVFVSPLPDFVLAPK 277

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +      L  L +  G+ GG+   GL+G+ IGPV + L+A + +E   A++    +
Sbjct: 278 MTLRRRGLNALISLLGIFGGLWAFGLVGIIIGPVSLGLLATVIEEWKKAMESQPAE 333


>gi|300711730|ref|YP_003737544.1| HTR-like protein [Halalkalicoccus jeotgali B3]
 gi|299125413|gb|ADJ15752.1| HTR-like protein [Halalkalicoccus jeotgali B3]
          Length = 389

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/353 (13%), Positives = 109/353 (30%), Gaps = 34/353 (9%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + Y ++ F A V+ A+ + ++  PI+     +        A++A V     F++ L +  
Sbjct: 24  AAYVVRAFIAVVVFAVFLYYSVRPIHRYL-RRFGLPRRLRAMLAIVLFGVPFLILLAYTV 82

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              ++E ++ V    + NQ                              +++    T   
Sbjct: 83  AIVVIETQQFVEAYDIQNQVLNSGLERF-------------DLAALDLDTVQRTVTTAGT 129

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS------LGEHLF 196
              I  +    S    +     +  + +++  ++   DG  +   +        +    F
Sbjct: 130 QGSILAVFFSLSSAASVVGSVLIQSLILVVLTYYMLVDGPQLRAWVLENLDDTGIIRRYF 189

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                ++S  +   I + F+   +  +              VP    LG +  I ++IP 
Sbjct: 190 DEVDPELSMTLFGNIVNVFVTAIVGVVVFFTYNVFVPEAVEVPFPSLLGALAGIGSLIPV 249

Query: 257 GAPISFTAVSIYLLIKGN---------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
                        L             I+      + G    FI D  +R  + G     
Sbjct: 250 VGIKLVYLPVGIGLAAAVVAAGQTPLLIYVGIFFVVAGVFVDFIPDFFIRALISGENT-- 307

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALI---AVIWKESIMAIKENKEKIS 357
                    + G    G  GLF+ PVL+ L+     +    ++  ++   + +
Sbjct: 308 HTGMLLLSYIVGPAVFGFYGLFLVPVLLILLTNAMYVLLPYVLWGEDTPAQQT 360


>gi|255101166|ref|ZP_05330143.1| hypothetical protein CdifQCD-6_10184 [Clostridium difficile
           QCD-63q42]
          Length = 363

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 104/332 (31%), Gaps = 3/332 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             +I+ ++++   +      P + A +I             K       +A I+      
Sbjct: 22  LVVILGLLMLLGKYAFSVLLPFVFAFLIASLLNKPVLYISEKLLIKRGIVATISVFLFFL 81

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  + +  +  Y +  +KE+   +    +  +            +++       +   ++
Sbjct: 82  IAGIIVSVIGTYLIYGIKEIFHFLPTMFEELVIPLTETVIKEVELFSGSFNFSFIELIEA 141

Query: 133 ---LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              + +   +    +  + I    +          +  I  I+A  F   D  +I + + 
Sbjct: 142 NMPVLMNEMSVFIVSLSNNIVSGITDIVSSVPLLFMKTIITIVASIFIAIDYPTIKRFIV 201

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       +        I        +I       L   + +  +     + +  A
Sbjct: 202 LQIPKNKSYLLAEAKAFTIDTIIKCGFSYLLIFAITFSELYVGFAIINISYAGIIALFIA 261

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ ++P     S       + +    ++         I + I+   + P LVG  ++L  
Sbjct: 262 LLDILPVLGTGSILIPWGIISLFLGDYSMALGIALLYIVITIIRNIIEPKLVGKHMELHP 321

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +     ++ G+   G +GLF   +L+A +  +
Sbjct: 322 VLALASMLTGLHFFGFIGLFGILLLIAFLKKL 353


>gi|85704044|ref|ZP_01035147.1| hypothetical protein ROS217_13636 [Roseovarius sp. 217]
 gi|85671364|gb|EAQ26222.1| hypothetical protein ROS217_13636 [Roseovarius sp. 217]
          Length = 351

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 50/351 (14%), Positives = 117/351 (33%), Gaps = 15/351 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  + + +   +L      FAP++ AL+ G    P+   F           + +  +
Sbjct: 13  RVAVILIALILSFAALKTGADIFAPMVLALVTGVMLAPVTDLFERIGFSCGLASSTVLIL 72

Query: 69  SVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  +  + +L   L +  + E+  +  ++         + R L ++            +
Sbjct: 73  GVSAIGTLAILAEPLIWQIVEELPRIQYELRSIIAEISNLIRGLQEV------------N 120

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
               ++L   ++   +T+    +P   S   +  L    +++F     FF        + 
Sbjct: 121 REVGEALGAAADAASETSEGGGMPNLTSALFLAPLVLAQALVFCGTLFFFLLTRKRMYAW 180

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               +G         +      +++   FL ++ I  G G  LG A +L  +P       
Sbjct: 181 LSLWIGTSDDTQDILRRFTNAERLVARYFLAISCINAGLGAALGGALFLIELPGPFVWAF 240

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           + A++  +    P++  A  +   ++  +   A            I  + + P  VG  I
Sbjct: 241 VAALLNFVLYVGPMTVAAGLLLAGIVAFDGLMAVTPPAIFLFLNMIEAQFVTPSFVGRHI 300

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            +  L  F  LV  +   G +G  I   ++ +   +     +         
Sbjct: 301 SVNPLLIFVSLVFWLWLWGPIGGIIAIPVLVIALALLDIFAVDATVEDPAP 351


>gi|282852361|ref|ZP_06261703.1| putative membrane protein [Lactobacillus gasseri 224-1]
 gi|282556103|gb|EFB61723.1| putative membrane protein [Lactobacillus gasseri 224-1]
          Length = 342

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 101/342 (29%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTF 61
           E       + R   + +I++ LY  +     +L   I  +    +      K     S  
Sbjct: 6   EKFKKNTNVHRLATLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKLPNLPSQV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+A + V+ +    +       + ++ ++   ++   Q                    
Sbjct: 66  IVVLAYLLVIAIIYFAITIYMPILIKQIVKMSHSLMEFYQS-----------------DN 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +          +     T    + +  +    +  G + + + +S+I             
Sbjct: 109 MDWLTQYLNHYISDSEITTQAKHVVTILVHALTNVGTLTIAFFMSLIMSFFYTIELDSMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 L+S                              IA+    +      +  +P  
Sbjct: 169 EFSHTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +AL ++  I+++IP    I     +S      G I     +F+   I   I    L P  
Sbjct: 229 IALCLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRYVIYIFIVIMIIHAIEAYILNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 289 MSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|297619520|ref|YP_003707625.1| protein of unknown function UPF0118 [Methanococcus voltae A3]
 gi|297378497|gb|ADI36652.1| protein of unknown function UPF0118 [Methanococcus voltae A3]
          Length = 360

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 131/336 (38%), Gaps = 20/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             I++   +F  ++ +Y +  F   +   +   + + P Y  F  K   S +  A+++ +
Sbjct: 7   NIILKVGSLFCFMLMVYIMLPFIDAISFGIAFAYITKPAYDRFRRKF--SKSTSAILSIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    +  +L +    +  +  L                 LS +   +          +
Sbjct: 65  VLTIPVLATILIIVEQLIFYLLNL----------------DLSTLSTSVSTLISKISIYN 108

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S      +      ++ I         +     + ++ ++   ++F +DG  +    
Sbjct: 109 INLSNYWTPISSDLFKFLEGILNGLLGQLSVVPLLMIKVLIILFMTYYFLKDGHKLLNAT 168

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  + A+ K  ++ +    ++ F G  + ++   ++    Y L G+P+ +ALGV+T
Sbjct: 169 LIHIPECYQAHVKIFAQKLNDSYKNMFTGTALTSLIAMVIAIIGYQLLGIPNALALGVLT 228

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTLRPFLVGGPIK 306
            I  ++P          ++IY L++G I  A  ++++G     FI+D  +RP +V     
Sbjct: 229 GICVLLPVVGGWGIYMPLAIYYLLQGEILYALTIYMFGTIFLSFILDFYIRPKVVKSGGN 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  + T    +    T+G+ G  +GP+++     ++
Sbjct: 289 VHPVMTLTAFLIAPLTLGIAGFALGPIIVGAFDSLY 324


>gi|329666438|gb|AEB92386.1| hypothetical protein LJP_0047 [Lactobacillus johnsonii DPC 6026]
          Length = 349

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 105/341 (30%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
                  + R + + +I++ LY  +     +L   I  +    +      K     +  +
Sbjct: 7   KFKENTTVHRLVTLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKIPSLPAQVI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+A + V+ +    +       + ++ ++   ++   Q                   ++
Sbjct: 67  VVLAYLLVIAIIYFAITIYVPILIKQIVKMSHSLIKFYQS-----------------DDM 109

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +     T    +G+  +    + FG + + + +S+I              
Sbjct: 110 NWVSRYLSHYISNSEITTQAKHGVTILVHALTNFGTLTIAFFMSLIMSFFYTIELNSMTE 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S                              IA+    +      +  +P  +
Sbjct: 170 FSHTFLQSRHLSWVFEDVAYFGNKFVNTFGVVLEAQFFIALCNTAMTMICLIIMRMPQII 229

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I+++IP    I     +S+     G +     +F+   I   I    L P  +
Sbjct: 230 ALGLMVFILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFM 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 290 SSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|229017259|ref|ZP_04174165.1| UPF0118 membrane protein [Bacillus cereus AH1273]
 gi|229023432|ref|ZP_04179933.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228737880|gb|EEL88375.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228744049|gb|EEL94145.1| UPF0118 membrane protein [Bacillus cereus AH1273]
          Length = 339

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 115/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+++ LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKVV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++   +  L        +++ +L+ +  L  QH                    
Sbjct: 65  IACLYIILVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEMIRYVLSAINEMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  I   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITIIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|254827894|ref|ZP_05232581.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258600275|gb|EEW13600.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
          Length = 348

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|255322255|ref|ZP_05363401.1| transport protein [Campylobacter showae RM3277]
 gi|255300628|gb|EET79899.1| transport protein [Campylobacter showae RM3277]
          Length = 338

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/341 (12%), Positives = 99/341 (29%), Gaps = 21/341 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     I+      ++   L        P L A+ I   + P  ++    K        V
Sbjct: 1   MRTGNAIIYLASFVVVAAGLKAASVVVLPFLMAVFIAIVATPAINALEKLKFPR-----V 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +A   V  +  + L F+    +  +  LVS +         +      I       +  +
Sbjct: 56  LAFALVTAVVFLSLGFIANTVLKTINGLVSYMPELQSKFKALADHYHHILASRGLIDPNS 115

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +             + +      F     +      F+ + + F   +    
Sbjct: 116 VAAPADFDI-------------NKLFAVLGGFLRSGTELASKSFFVFLLVTFMLFEVQVF 162

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           SQ+++            +I       ++      +  +   G+ +       GVP     
Sbjct: 163 SQKVEYFASKN--PQTNQIVDTFISNLKRYLAIKSAASFATGVFIFIGLNFIGVPYAPLW 220

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL-WGAIELFIVDKTLRPFLVGG 303
           G++  ++  +P    I     ++ + +  N   A        A+   ++   + P  +G 
Sbjct: 221 GILAFVLNFVPTIGSIIAAVPALLVALLLNDAAACAWTAALYAVVNVVIGNFIEPKFLGK 280

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            + +  L     L+      G+ G+F+   L   + +    
Sbjct: 281 GLGISTLVVLLSLLFWGFLFGIGGMFLAVPLTMSLKIALDA 321


>gi|296185784|ref|ZP_06854191.1| hypothetical protein CLCAR_1221 [Clostridium carboxidivorans P7]
 gi|296049612|gb|EFG89039.1| hypothetical protein CLCAR_1221 [Clostridium carboxidivorans P7]
          Length = 299

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/289 (15%), Positives = 102/289 (35%), Gaps = 6/289 (2%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           KK  S    +++  +  +   ++ L F   Y + E   L   +   + +   +       
Sbjct: 7   KKGISKGISSLLTLIISLIAALLILYFFIRYALWEFNGLAKNIHNLSPNTNTITSQ---- 62

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                 S +   + S   +  I     +  N          +     +D    I+ +++ 
Sbjct: 63  --NPINSIVSEIYKSININELIKIANNMMINYTQKFQSSLYKNINDIVDAFSKILLVLLI 120

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF  +D      +   L    +  +  +    V K + +   G  ++A+   +++   Y
Sbjct: 121 LFFLLKDASKFKDKFIDLFPEKYKNFLSETLYNVDKALNAYVTGQLMVALSLAIMIYIGY 180

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            + G+P+ +   + T I+  IP         +   + +   I+    L +       +  
Sbjct: 181 KIIGMPNALIWALFTFILGFIPFIGFFISMIIPSIIAVSKGIYMIIKLSIVFITVQTLKG 240

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + + P ++   +K+  L   F +V  V   G +  FI   L A++ VI 
Sbjct: 241 RVVVPLIMSSTLKIHPLTDIFLVVTAVSYGGPMAAFIIVPLYAMVKVIV 289


>gi|213026539|ref|ZP_03340986.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 307

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 52/308 (16%), Positives = 109/308 (35%), Gaps = 6/308 (1%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G     + +    M++     Y  
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHIGR----FMMHCALMLLFSALLYWR 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  ++  +      L          +  + IR+  LG+ + A+ + ++ G    ++GVP 
Sbjct: 181 GEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGVVVTALVQAVLGGVGLAISGVPY 240

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+  +  ++  G         I+L   G+    T L +W A+   + D  +RP L
Sbjct: 241 ATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSAVVGTL-DNVIRPVL 299

Query: 301 VGGPIKLP 308
           +     LP
Sbjct: 300 IRMGADLP 307


>gi|254516330|ref|ZP_05128389.1| integral membrane transport protein [gamma proteobacterium NOR5-3]
 gi|219674753|gb|EED31120.1| integral membrane transport protein [gamma proteobacterium NOR5-3]
          Length = 346

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 95/313 (30%), Gaps = 21/313 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
                P L +L I   +   +     +         V +   V+    V +         
Sbjct: 29  SAIVVPFLLSLFIAIIAATPFGWLKKR-----GLSTVASVFIVVIAIAVSITLFAILLGN 83

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
              +  + + L       +                     +  + +++       +    
Sbjct: 84  TATQFEAAMPLYQARLDELT--------------ATVTTWAATKGIRLDDAGIFNSLDPA 129

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +  F +           +   ++  + F   +     ++L S+  H   +   +++ +V
Sbjct: 130 AVMNFGNNLVAGIGGALSNYFLVLFTVMFMLFEAAGFPRKLASIQGHDSESTLLRLAEVV 189

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             + R   +   I+++  GL++  A  L G+      G +  ++  +P    +     ++
Sbjct: 190 ESINR-YVVAKAIVSLATGLLIWLALELIGLDFAPLWGFMAFLLNFVPNIGSLIAAVPAV 248

Query: 268 YLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            L I          +     +   +V   + P ++G  + L  L  F  LV      G +
Sbjct: 249 LLAILQLEPAMVLVVIGVYILINTVVGSIIEPTIMGQRVGLSTLAVFLSLVFWGWMFGAV 308

Query: 327 GLFIGPVLMALIA 339
           G+ +   L  +I 
Sbjct: 309 GMLLSVPLSMVIK 321


>gi|284801280|ref|YP_003413145.1| hypothetical protein LM5578_1030 [Listeria monocytogenes 08-5578]
 gi|284994422|ref|YP_003416190.1| hypothetical protein LM5923_0984 [Listeria monocytogenes 08-5923]
 gi|284056842|gb|ADB67783.1| hypothetical protein LM5578_1030 [Listeria monocytogenes 08-5578]
 gi|284059889|gb|ADB70828.1| hypothetical protein LM5923_0984 [Listeria monocytogenes 08-5923]
          Length = 348

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVVIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+      G+ GL +G  +   +  I +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILE 328


>gi|302387164|ref|YP_003822986.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
 gi|302197792|gb|ADL05363.1| sporulation integral membrane protein YtvI [Clostridium
           saccharolyticum WM1]
          Length = 357

 Score = 87.3 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 3/303 (0%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           +           K +     + ++  +    +  + L+ L    +    ++VS +     
Sbjct: 45  YILKTPARFISQKTKLPYKPVVLLLVLLFYSIIGLLLVLLGIKLVTSTIDMVSVLPSVYT 104

Query: 102 HGIPVPRWLSDIPGGMWASELWTKH---LSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
             I                ++       L+   S  + S   L TN         S +  
Sbjct: 105 AEIEPALSAFFNGIEQIIFKMDPALVAALNDMFSQFVQSIGELVTNLSVQSVSALSGYAS 164

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
                 + ++ M+I+ FF   D   +             A   ++   V   +       
Sbjct: 165 SLPGIFIKLLLMVISTFFIAGDYDMLVGFASRQLSDKARALLLQVKNYVVGTLFVCIRSY 224

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            +I     + L     + GVP+ + + +  +I  ++P             +      +  
Sbjct: 225 ALIMSITFVELAIGLSIIGVPNAILIALAISIFDILPVLGTGGIMIPWTVITAIQGNYPL 284

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               L   + + ++   L P +VG  I L  + T   +  G +  G+ GLF  P+L++L+
Sbjct: 285 AIGLLVVYLIITVIRNILEPKIVGSQIGLHPIVTLASMFVGAQLFGVFGLFGFPILLSLL 344

Query: 339 AVI 341
             +
Sbjct: 345 RHL 347


>gi|313623797|gb|EFR93928.1| membrane protein YdbI [Listeria innocua FSL J1-023]
          Length = 345

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 99/339 (29%), Gaps = 19/339 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + +   +        ++ +LV       +                  +E   
Sbjct: 67  LLYVLIAGVIVFVFVKYIPVLADQINQLVKFGNSFLKT--------------DSNNEFIN 112

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +S      I+  T    + I           M      +  +F  +            
Sbjct: 113 YIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKDHLISFTNQF 172

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S               K                  IIA+   ++   A W+ G P  + L
Sbjct: 173 STSKIGFIY----EEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLMTL 228

Query: 245 GVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  ++ +IP    I     ++I     G +     + +   I   +    L P L+  
Sbjct: 229 SIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLMSA 288

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 289 KTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|134100754|ref|YP_001106415.1| hypothetical protein SACE_4221 [Saccharopolyspora erythraea NRRL
           2338]
 gi|291008322|ref|ZP_06566295.1| hypothetical protein SeryN2_27706 [Saccharopolyspora erythraea NRRL
           2338]
 gi|133913377|emb|CAM03490.1| hypothetical protein SACE_4221 [Saccharopolyspora erythraea NRRL
           2338]
          Length = 361

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 93/314 (29%), Gaps = 21/314 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             AP   AL+I   + P+    + K             V V  + I   + +        
Sbjct: 42  LIAPTFLALVIVIATNPVPVWLVGK-GVPRWLATAALVVLVYAVLITFAVVVLLSIARLA 100

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L      A+     +   L+    G             P+ +K  +           +
Sbjct: 101 TILPQYASRADALLAGLTHELARFGIG-------------PEQVKNAAGKVDFGKLTGVV 147

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               S    +  +    +  ++         G  ++   D            +  R    
Sbjct: 148 GSLLSGVASVGTNLVFLLALLLFISVETGAVGTRMAMVADG------HPEAARALREFTL 201

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIY 268
             RS  +  T+      ++   A  L GVP  +  G++  +   IP    +      ++ 
Sbjct: 202 GTRSYLVVSTVFGGIVAVLDVIALLLLGVPLPILWGLLAFVTNYIPTIGFVLGVIPPALL 261

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L++G    A  + +   +  F++   ++P  VG  + L    T   LV     +G LG 
Sbjct: 262 ALLQGGWKLAVTVVVVYCVLNFVIQSIIQPRFVGDAVGLSVTVTLLSLVFWTWVIGALGA 321

Query: 329 FIGPVLMALIAVIW 342
            +   L  L   + 
Sbjct: 322 ILAIPLTLLAKAVL 335


>gi|56750725|ref|YP_171426.1| hypothetical protein syc0716_c [Synechococcus elongatus PCC 6301]
 gi|56685684|dbj|BAD78906.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 347

 Score = 87.3 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 13/326 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L+   + +G  +  LSA ++ F       +    +        +I    ++ L ++  +
Sbjct: 30  VLLIWDYFRGPISIFLSAALLSFILGLPVRALERWRV-PRLLAVLIILAVIVVLLLLVTV 88

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    + ++  L + +  +   G    + L   P            L    S       
Sbjct: 89  TLLPILINQVSALANTLPRSLNDGFQQFQLLEQHPFFSRIPLDLRAVLGTVVSRLSEQLQ 148

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L +  ++ +   AS      L   +S         +    G  +   L +     + + 
Sbjct: 149 ALTSRLLELLLGVASGALQTMLTLVISF--------YLLLRGDEVWDGLYNWLPVRWRSR 200

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +     R+  L    IA   G        L G+   + LG    ++A+ P G  
Sbjct: 201 ARSALEL---SFRNYLLSQMTIAFLIGSSATIVLLLLGLRFWLLLGCGIGLLAIFPFGGS 257

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS  +++I   +  N +    + ++      +++  + P L G  I +  +     ++ G
Sbjct: 258 ISIVSLAIVQ-MFSNPWLGFRILVFCWGTDQLIENLIAPRLFGKSIGVHPVWVLMAILIG 316

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
            +  GLLG+ +    +  + ++  + 
Sbjct: 317 AQLGGLLGVILAVPTVGCLRILLDDY 342


>gi|312887141|ref|ZP_07746745.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
 gi|311300453|gb|EFQ77518.1| protein of unknown function UPF0118 [Mucilaginibacter paludis DSM
           18603]
          Length = 362

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 110/321 (34%), Gaps = 16/321 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +        P+L A        PI+     K +   +    +  + ++    + +     
Sbjct: 31  IVLGNTVIMPLLMAFFFSLMLMPIF-RLFRKLKIPESIAIFLPILLLIISLALVIWLFTS 89

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                + +         +H   +  W+S+  G   A +L                     
Sbjct: 90  QVSALLDDFPQIQRTVTRHLDSLSIWISNSFGYSPAEQL-------------KFINEQSK 136

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                +    S          + I  + I ++          + +            ++ 
Sbjct: 137 KLFSSLGGMLSGAAGSLSGVIIFIGLLPIYIYLIILYRNLFLKFILMWFNANEHLNVEEG 196

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            R   K+++S  +G+ I      ++LG A W+ G+ + + +G+I A + +IP    +   
Sbjct: 197 IRQTEKMVKSYLIGLLIQITYIIILLGGALWILGIQNALLIGIIFAFLNLIPYLGALIGN 256

Query: 264 AVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            + + L       I +   +        F+ +  L P +VG  +K+  L +  G++ G  
Sbjct: 257 ILGVLLTLASSDKISDVLIVLGAITFVQFLDNNILMPRIVGSQVKINALVSIVGIIIGGV 316

Query: 322 TMGLLGLFIGPVLMALIAVIW 342
             GL G+F+   +++++ +++
Sbjct: 317 MAGLSGMFLAMPIISILKIVF 337


>gi|116753687|ref|YP_842805.1| hypothetical protein Mthe_0372 [Methanosaeta thermophila PT]
 gi|116665138|gb|ABK14165.1| protein of unknown function UPF0118 [Methanosaeta thermophila PT]
          Length = 339

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 52/355 (14%), Positives = 111/355 (31%), Gaps = 19/355 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  M  +++   +   YF+      ++   +  +   PI   F           + 
Sbjct: 1   MNIKRNWMIAVVLIAFIAIAYFMFPLVDGIILGTVFAYIGRPIRDMF----GPRKRLGSA 56

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IAT+ ++    + L+            +        +        L              
Sbjct: 57  IATIGIIVPISLVLILGVMEIANFFMWIAQNPGSMAREMSSTISGLEIPDEIYTLITGSL 116

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + +    +                       +G   +   ++II  I   +F   DG   
Sbjct: 117 QSILSFVADVAARMP-------------LLDYGRRVVLLAVNIIVAIPVCYFLLCDGERF 163

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                ++        ++     + +++   FLG    AI   ++    ++   VP   A+
Sbjct: 164 VDSWFTIVPEESLDTYRAYFNRIDRILSGIFLGSMYTAIVGSVISAIVFYAFDVPRPFAM 223

Query: 245 GVITAIMAMIPGGAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL-RPFLVG 302
             +  I  ++P     +    VSIY  I      A   F   +  +++  + + RP+LV 
Sbjct: 224 ASLVFIAGLVPALTAWAVIVPVSIYRYIHMGPAEALMFFAVASALIYLPSELIVRPYLVA 283

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
               +  L      +GG    G+ G F+ P +M +I  I++         KE  +
Sbjct: 284 ARSSIHPLLVMLSFLGGAMVAGIGGFFLAPAVMGVIVGIYQVRREQSLAAKETQN 338


>gi|256810121|ref|YP_003127490.1| protein of unknown function UPF0118 [Methanocaldococcus fervens
           AG86]
 gi|256793321|gb|ACV23990.1| protein of unknown function UPF0118 [Methanocaldococcus fervens
           AG86]
          Length = 333

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 122/336 (36%), Gaps = 20/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +   + +I+ +++V LY +  F   +  +    + + P+Y  F  K   S    A +A  
Sbjct: 7   KYFRKGVIIGLLIVLLYIIWPFIDVLAYSCAFAYMALPLYKLFRKKF--SRAVSAGLALS 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +V  ++  +  +  +      V+     G+                        
Sbjct: 65  IYVIPIMVITIYALFAVIDFIFSFNINVIEEYISGVFNL----------------YTSSI 108

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +   + T      + +     S          + +I +I   F+F ++G      +
Sbjct: 109 FNGFVNEQTLTKYIDEFVKYFINQLSGKIFDTGYLIIKVIMVIFITFYFLKEGDKAENVI 168

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S   + +    K     +    ++ F+    ++I   ++    Y + GVP      V+T
Sbjct: 169 ISFTPNEYKEKMKIYLEYLHDSYKNLFISCVSLSIIITILSYIGYLIVGVPYAELFAVVT 228

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I A++P          ++IY  I  +   A  LF++G + L I  D  +RP+LV   + 
Sbjct: 229 GIFALLPILGGWMVYIPIAIYYFITHDYTKAIFLFIYGELMLSIAPDFVIRPYLVKKEVD 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  +      +    ++GL G  IGP+++  +   +
Sbjct: 289 IHPVLVIVAFLMAPLSLGLSGFAIGPLVVGALNAFY 324


>gi|167753103|ref|ZP_02425230.1| hypothetical protein ALIPUT_01374 [Alistipes putredinis DSM 17216]
 gi|167659417|gb|EDS03547.1| hypothetical protein ALIPUT_01374 [Alistipes putredinis DSM 17216]
          Length = 368

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 46/355 (12%), Positives = 112/355 (31%), Gaps = 12/355 (3%)

Query: 6   LNPQGIMRW----MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           + PQ ++R+     I  ++L  +++       +L + ++     P+ +     +      
Sbjct: 3   ITPQTLLRFTVGAAITAVVLFLMWYFSSIVIYILVSAVLAIMGRPLVARISRGRIGRWRV 62

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
                 +  + +  +    +    +  +   + ++   +   +             + + 
Sbjct: 63  PRWCGALVTLLVIWIVFAVMCGLFVPLVTNKLYQLAHLDFSTVLTSVEEPLQRIQDYLTH 122

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            ++   +       L          D I    S    + +   ++   +    FFF RD 
Sbjct: 123 FFSLPETQVSFKDTLILFLQSLINFDTINTAFSSVVSLAVSSVIAFFSISFITFFFLRDD 182

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--P 239
                 + +L    +          V  ++   F G+   +    L +       G+   
Sbjct: 183 GLFYAMVTALFPDRYQQNVTHALNSVTVLLFRYFRGILAESFLLMLAVSLVMMAFGMRAQ 242

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI------FNATCLFLWGAIELFIVD 293
               +G+I  +M ++P   P    AVS+ + I   I           +     I   + D
Sbjct: 243 DAFFIGLIMGVMNVVPYAGPTIGGAVSVCMGIITPIEGMSIGHTMLVIAGSLLILKGLDD 302

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             L+P L    +K   L  F  ++      G++G+ +   L  ++ V  KE    
Sbjct: 303 FVLQPTLYSERVKAQPLEIFLVILIAGSLAGVIGMLLAIPLYTVLRVFAKEFFSQ 357


>gi|255527660|ref|ZP_05394519.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
 gi|255508640|gb|EET85021.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
          Length = 349

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/344 (12%), Positives = 113/344 (32%), Gaps = 4/344 (1%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + ++ ++I  I+ ++ +    +  P + AL+            +   +  S+  ++I
Sbjct: 7   KIDKIVIFFIIYTIVFLTFFSTINYTLPFVLALLFALILKKPTKYIMRTFKIRSSIASLI 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN--QHGIPVPRWLSDIPGGMWASELW 123
            T++   + ++ L F       E  +L   + L            +              
Sbjct: 67  TTITFFTILVLILSFGIGMFTSEAIQLGKNIQLYISKNSSNVYDSFEELQKYYKNLDPNI 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    S  +   + +       I      F        + I+F ++A +FF +D   
Sbjct: 127 INAVDKNFSSLVTKLSNITVFITGKIVSTLLGFLASIPYIIMVILFTLLATYFFTKDIVD 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +  ++           I     K++ +  +   +I     L     +    V   + 
Sbjct: 187 VKDKFLNIIPENKTDKIFYIYLETKKMLVNYIMSYMLIIGITFLETIIVFLFFKVKYAIV 246

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVG 302
           L V+ A + ++P     +       + I       T    +   I + I+ + + P +V 
Sbjct: 247 LSVLCAFVDILPILGIGTIYIPLAIIYIFLFKNYITAFGIIISYILVSIIRQIIEPKIVS 306

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             + +  +     L  G++  G+ G+      + +   I+K+ I
Sbjct: 307 SSLGINPVAVLAALFIGLKLNGISGIIFCI-FLVVFYNIFKKLI 349


>gi|160914220|ref|ZP_02076441.1| hypothetical protein EUBDOL_00230 [Eubacterium dolichum DSM 3991]
 gi|158433847|gb|EDP12136.1| hypothetical protein EUBDOL_00230 [Eubacterium dolichum DSM 3991]
          Length = 368

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 109/320 (34%), Gaps = 11/320 (3%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +  +     P L  L+I +  +P+      K   S     V+     +    + L+ L  
Sbjct: 48  VAIVLSIIKPFLIGLVIAYVMYPMVRFLQQK-GLSKNVSIVLLWGVAIAFLAILLIVLMP 106

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               ++   +  +           + +           L    ++   + +     F+ T
Sbjct: 107 LLYDKISGFIVSMTEGVLWISDKIKEIGQFENFSLIDNLTKNIINMISAYEGWLPQFVAT 166

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                          + +D   +I F II   +   D  +I   + S    LFP+  +K 
Sbjct: 167 ---------LPNIMSVLVDSVTTIGFSIIIAIYMLADFKTIRHNIKSTFVALFPSS-EKY 216

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              + + +      M +I + +     + Y+L G P  V +G+++++ ++IP        
Sbjct: 217 LYEIDENVTVYLKSMIVIMLIKLFEYWAFYYLIGHPDWVIIGILSSLGSLIPYLGGTIAN 276

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           ++ I   +  +      L L   +   +    + P +      +  L T F +  G   M
Sbjct: 277 SIGIITALTLSPLRILLLLLGIFVLSHMDAYVISPLVHEKRSAVGPLVTLFVIFAGGVIM 336

Query: 324 GLLGLFIGPVLMALIAVIWK 343
           G +G+ +   +  +I  I +
Sbjct: 337 GWVGIMLAMPVAIIIKTIIE 356


>gi|146280791|ref|YP_001170944.1| hypothetical protein PST_0396 [Pseudomonas stutzeri A1501]
 gi|145568996|gb|ABP78102.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 356

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 67/277 (24%), Gaps = 16/277 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           +++ G     +                    V+++         +      +   L   +
Sbjct: 47  SILFGVLIHGVSCWLSRHSPLPYKASMAAFFVALLLGLGGGGWLVAPSIAEQADALSDSL 106

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             A +        L      +  S+     L                          ++ 
Sbjct: 107 PEAVERLRERAEQLPWANELLQQSDRLADSLPE----------------GSSAFSVVTKV 150

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                    S +           D       L  L    +     ++       +R+  L
Sbjct: 151 MGSVAGALSSFVIAFAIGICLAIDPRVYRSGLLKLVPQGYRPRAAEVLDESGATLRAWLL 210

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
              +  +  G++     WL G+   + LG+I  +++ IP   P+     ++ L       
Sbjct: 211 AKLLEMLLIGVLTTLGLWLLGIELALVLGLIAGLLSFIPNIGPVLAVIPALLLASLEGGR 270

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               +         +      PF+    + +P   T 
Sbjct: 271 TVLYVAGLYLFVQALESYVFTPFMQQRIVSIPPALTI 307


>gi|309800351|ref|ZP_07694518.1| membrane protein [Streptococcus infantis SK1302]
 gi|308116023|gb|EFO53532.1| membrane protein [Streptococcus infantis SK1302]
          Length = 205

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 73/198 (36%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S          +++I M   LF+  RDG  +   +     +       K+   V + + +
Sbjct: 2   SALISGTSQVIVALIIMPFMLFYLLRDGKGLRDHITQFLPNKLREPVGKVLTDVNQQLSN 61

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G   +A+   ++    + + G+   V LG+   ++ +IP          ++ L +  
Sbjct: 62  YVRGQITVAVIVAIMFIIFFKIIGLRYAVTLGITAGVLNLIPYLGSFLAMIPALVLGLIA 121

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                  + +   +E  I  + + P ++G  + +  +   F L+      G+ G+ +G  
Sbjct: 122 GPVMLLKVIIVFIVEQTIEGRFVSPLILGSQLNIHPITILFVLLTSGSMFGVWGVLLGIP 181

Query: 334 LMALIAVIWKESIMAIKE 351
           + A   V+        K+
Sbjct: 182 VYASAKVVISAIFEWYKK 199


>gi|317010786|gb|ADU84533.1| hypothetical protein HPSA_02620 [Helicobacter pylori SouthAfrica7]
          Length = 360

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/365 (15%), Positives = 127/365 (34%), Gaps = 30/365 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK---------EESS 59
           Q     + +      LY  + F    L A ++    + +      +            S+
Sbjct: 4   QYFFWILFLIGFYWMLYLYQDFLMDALIAGLLCVGLFQVKVFLDKRFSHVKYFYIDRFSN 63

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F +++  + +  + IVPL F+ Y G     E+        +    + +WL         
Sbjct: 64  VFSSLLCVLVLASVLIVPLYFIVYKGSNVFFEI------NFEKLSALIKWLK-----GTI 112

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           +E  +   +    +      F   +   ++ + +S  G          +F++  LFFF+ 
Sbjct: 113 TENLSHFPTIHDEVSKFLANFSAASITGYLLKISSYVGKYGFKLITDALFILGLLFFFFY 172

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            G         +         KK+   V  ++R   L   I  I EG+  G      G  
Sbjct: 173 YGERFYCYFLGVLPLEN-NQSKKVFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHD 231

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP 298
                 +      +   G  + +  ++IY L  G++  A  + L+  + +  ++D  L+P
Sbjct: 232 GWSLGILYGLASLVPAVGGALIWIPIAIYELYHGSVNGAIFIALYSILLISVLIDSVLKP 291

Query: 299 --------FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                    +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       
Sbjct: 292 YLIVFIKKRIFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFI 351

Query: 351 ENKEK 355
           + +++
Sbjct: 352 QKEQE 356


>gi|150402118|ref|YP_001329412.1| hypothetical protein MmarC7_0191 [Methanococcus maripaludis C7]
 gi|150033148|gb|ABR65261.1| protein of unknown function UPF0118 [Methanococcus maripaludis C7]
          Length = 336

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/337 (14%), Positives = 115/337 (34%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + IMR  ++      L+    F   +  A    + + P ++             A+I  +
Sbjct: 7   RFIMRVFVLISFASVLFVAFPFLDTIAFACAFAYMTEPFFNVIKRYTG--RNLGAIICIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    +  ++ +    +  +  L   +     + I    +                 L 
Sbjct: 65  MITVPALSLVVLILTDVVEFLNTL--NIQSFVDNSIQFVNYFGLQNIAKEDLNSIISELW 122

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            +       +          +  +  I   ++F +DG+     +
Sbjct: 123 ---------------TFLKPTVNKMASQIYGLPLLFIKGLVTIFLTYYFLKDGYRFKDAI 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + A   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIAGFWAIGIPNPVTLGALS 227

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P     +    +S+Y +  G    A  LF +G I L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSVYYVAVGMYSKAVLLFGFGVIFLSLAPDFAIRPRLVNHESS 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPALALVAFLMGPLALGVTGFALGPLIMGTFDAIFR 324


>gi|296186799|ref|ZP_06855200.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
 gi|296048513|gb|EFG87946.1| sporulation integral membrane protein YtvI [Clostridium
           carboxidivorans P7]
          Length = 351

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 42/335 (12%), Positives = 108/335 (32%), Gaps = 3/335 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + ++ ++I  I+ ++ +    +  P + AL+            +   +  S+  ++I
Sbjct: 7   KIDKIVIFFIIYTIVFLTFFSTINYTLPFVLALLFALILKKPTKYIMRTFKIRSSIASLI 66

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN--QHGIPVPRWLSDIPGGMWASELW 123
            T++   + ++ L F       E  +L   + L            +              
Sbjct: 67  TTITFFTILVLILSFGIGMFTSEAIQLGKNIQLYISKNSSNVYDSFEELQKYYKNLDPNI 126

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    S  +   + +       I      F        + I+F ++A +FF +D   
Sbjct: 127 INAVDKNFSSLVTKLSNITVFITGKIVSTLLGFLASIPYIIMVILFTLLATYFFTKDIVD 186

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +  ++           I     K++ +  +   +I     L     +    V   + 
Sbjct: 187 VKDKFLNIIPENKTDKIFYIYLETKKMLVNYIMSYMLIIGITFLETIIVFLFFKVKYAIV 246

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVG 302
           L V+ A + ++P     +       + I       T    +   I + I+ + + P +V 
Sbjct: 247 LSVLCAFVDILPILGIGTIYIPLAIIYIFLFKNYITAFGIIISYILVSIIRQIIEPKIVS 306

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
             + +  +     L  G++  G+ G+     L+  
Sbjct: 307 SSLGINPVAVLAALFIGLKLNGISGIIFCIFLVVF 341


>gi|222147947|ref|YP_002548904.1| hypothetical protein Avi_1260 [Agrobacterium vitis S4]
 gi|221734935|gb|ACM35898.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 366

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 35/337 (10%), Positives = 98/337 (29%), Gaps = 17/337 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + + + + +L++      P+  A+++G           +          ++ T  
Sbjct: 32  WAVIGLFLIVAIAALHYAGTILMPLTLAVVVGLILGLAADRLEALGVPPMMSAVLLTTAL 91

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + I+                   ++   Q    + + + D     +    W      
Sbjct: 92  FTLVTIIANTLAGP------------LMELAQDIPSIGQTMMDRFTPYFQRFHWLHLDRL 139

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 ++   +  NG   +   AS+     +   +    +++ L        ++     
Sbjct: 140 ASGNGPINLDKMLENGGGILSTVASQVTPAIVQTLIFFAALVLFLAGRVSIRKTLIVSFR 199

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                L           +   +   F   ++I  G G       W+ G+   V  G    
Sbjct: 200 DRARRLSAIRS---INAIETALGFYFATASVIYAGVGCCALLIAWVGGLTLPVLWGFFAF 256

Query: 250 IMAMIPGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + +P      ++F      +L   ++       +       +V+  + P ++G  +++
Sbjct: 257 LSSFVPFLGVTAMTFALAVAGMLTHSSLLFGLLPAIAFFTVHALVENLVTPAVMGRRMEI 316

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                F  ++      G  G  +   L  +   I+ E
Sbjct: 317 NAFGVFVAIIFWTWVWGAAGAMLAVPLALIGKAIFTE 353


>gi|17232813|ref|NP_489361.1| hypothetical protein all5321 [Nostoc sp. PCC 7120]
 gi|17134460|dbj|BAB77020.1| all5321 [Nostoc sp. PCC 7120]
          Length = 343

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 101/339 (29%), Gaps = 11/339 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++ ++   I L  L+  +     V +++++      + +    K          I+   
Sbjct: 5   QLIGFLAFVISLYILWQTRQILLVVFASIVLATVLNQLVTFLQ-KFRLRRGPAVAISVAL 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +  V    +    + ++++    + LA +       WL +I        +       
Sbjct: 64  LVAVLAVFFALIVPRLVEQLQQFDDIMPLAVERLRLWNNWLQNIIPNQLLESI------- 116

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                I   T    + ++ +     R     L   L ++  +        D     Q   
Sbjct: 117 ---QGIRYLTQGLQDWLNRLIDNFFRLVSSSLSIILGLLLFVALTIMLLADPSPYQQGFI 173

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +      I       +     G  +  +    +      + G+P  +   ++  
Sbjct: 174 MLFPAFYRRRVDDILNKCAVSLTGWIKGTLLTMLVIATLSYIGLLILGIPLPLVNAILAG 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++  IP   P         L +    +    +         +    + P ++     L  
Sbjct: 234 LLEFIPNVGPTLSVIPPALLALSEAPWKILAVIALYFGIQQVESLVILPLVMKSQASLLP 293

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             T   +V      G LG+F+   L+ ++ +  KE ++ 
Sbjct: 294 AVTLVAVVFFGSFFGFLGVFLAVPLVIVLQIWIKEILVE 332


>gi|113953062|ref|YP_731825.1| hypothetical protein sync_2637 [Synechococcus sp. CC9311]
 gi|113880413|gb|ABI45371.1| putative membrane protein [Synechococcus sp. CC9311]
          Length = 360

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 96/303 (31%), Gaps = 13/303 (4%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F++   L  L  F    L+A +I F          ++          +     + + ++ 
Sbjct: 22  FVLRQLLVPLAPFPGLFLTAALIAFLLSIPSRWLRAR-GLPDWLAISLVFFVAVGILVIS 80

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            + L    + ++ +L++ +    +    +   L            +    S   +     
Sbjct: 81  GITLVPLLIDQLAQLINALPGWLEASQGLIARLQGWAMAHGLPSEFGDLSSDVLT----- 135

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                +     + +         L   ++ + +++   FF   G SIS  L       + 
Sbjct: 136 ---RASRLASQLSQQLLSILGATLGTTINTVIVLVLAVFFLLGGDSISAGLVRWLPQEWR 192

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                +   + +  R  F G  ++A+       + + L  +P  V   V+  +  +IP  
Sbjct: 193 QL---VVTTITRTFRGYFAGQVVLALILSAGQIAVFTLLKIPYGVLFAVLIGLTTLIPYA 249

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           +  +       LL   ++     +         IVD+ ++P L+G  + L        L 
Sbjct: 250 SAFTVV-AVSVLLAVQDLGMGVAILAAAIGVGQIVDQVIQPRLMGSIVGLQPAWLLIALP 308

Query: 318 GGV 320
            G 
Sbjct: 309 LGA 311


>gi|81299634|ref|YP_399842.1| hypothetical protein Synpcc7942_0823 [Synechococcus elongatus PCC
           7942]
 gi|81168515|gb|ABB56855.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 348

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 111/326 (34%), Gaps = 13/326 (3%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +L+   + +G  +  LSA ++ F       +    +        +I    ++ L ++  +
Sbjct: 31  VLLIWDYFRGPISIFLSAALLSFILGLPVRALERWRV-PRLLAVLIILAVIVVLLLLVTV 89

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            L    + ++  L + +  +   G    + L   P            L    S       
Sbjct: 90  TLLPILINQVSALANTLPRSLNDGFQQFQLLEQHPFFSRIPLDLRAVLGTVVSRLSEQLQ 149

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            L +  ++ +   AS      L   +S         +    G  +   L +     + + 
Sbjct: 150 ALTSRLLELLLGVASGALQTMLTLVISF--------YLLLRGDEVWDGLYNWLPVRWRSR 201

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +    +     R+  L    IA   G        L G+   + LG    ++A+ P G  
Sbjct: 202 ARSALEL---SFRNYLLSQMTIAFLIGSSATIVLLLLGLRFWLLLGCGIGLLAIFPFGGS 258

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           IS  +++I   +  N +    + ++      +++  + P L G  I +  +     ++ G
Sbjct: 259 ISIVSLAIVQ-MFSNPWLGFRILVFCWGTDQLIENLIAPRLFGKSIGVHPVWVLMAILIG 317

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKES 345
            +  GLLG+ +    +  + ++  + 
Sbjct: 318 AQLGGLLGVILAVPTVGCLRILLDDY 343


>gi|315282307|ref|ZP_07870742.1| membrane protein YdbI [Listeria marthii FSL S4-120]
 gi|313614043|gb|EFR87752.1| membrane protein YdbI [Listeria marthii FSL S4-120]
          Length = 345

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 99/341 (29%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + +   +        ++ +LV       +                  ++ 
Sbjct: 65  VLLLYALIAAVIVFVFVKYIPVLADQINQLVKFGNTFLKT--------------DSNNDF 110

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S      I+  T    + I           M      +  +F  +          
Sbjct: 111 INYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHLVSFTN 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S    +          K                  IIA+    +   A W+ G P  +
Sbjct: 171 QFSTSKIAFIY----EEVKFFGSKFVATFGKVIEAQFIIALVNAFLTTIALWILGFPQLM 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP    I     ++I     G +     + +   I   +    L P L+
Sbjct: 227 TLSIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILIVVIIIHALESYVLNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 287 SAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|91773302|ref|YP_565994.1| hypothetical protein Mbur_1326 [Methanococcoides burtonii DSM 6242]
 gi|91712317|gb|ABE52244.1| protein of unknown function UPF0118 [Methanococcoides burtonii DSM
           6242]
          Length = 354

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/353 (10%), Positives = 119/353 (33%), Gaps = 19/353 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +  + +  L      ++  ++  +   PIY+      +      A++AT+
Sbjct: 18  KMVLSVALVLLFSLFIIILLPIADGIMLGIVFAYIGRPIYNFI----KMKRHLGALVATM 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L         ++  +        +  +   R L+                +
Sbjct: 74  FIVIPIVMILGMGIIEIANQLMWIAENQGAVIESLLDFIRNLN-------------IPDA 120

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           + ++++        +            +      + ++++  ++  +F   DG  + + +
Sbjct: 121 YYENIRQTIWNSSISILPLLGNLVFVSYARGIAMFMINLLVAVLVCYFLLADGDGLYRSV 180

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         K+    +  ++   F+G    A+    +    ++  G+   +AL  + 
Sbjct: 181 LRIIPKGNQHLVKRYVHHMDIILSGVFIGNAYAALSVSTLSVIVFYAFGLSHVLALATLI 240

Query: 249 AIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            + ++IP  A      V   +     G         +   I     +  LRP+L      
Sbjct: 241 FVASVIPMFAGYMVLVVLTIVRYFSLGFESALIFFVVSSIIIYAPPEFFLRPYLASIKSH 300

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +         +GG    G+ G F  P+L+  +   ++  +  ++    + S++
Sbjct: 301 IHPFLIMLAFLGGAFVGGIAGFFAAPILLGTLVSAYRVYVEDLEYVSPETSAD 353


>gi|319788206|ref|YP_004147681.1| hypothetical protein Psesu_2619 [Pseudoxanthomonas suwonensis 11-1]
 gi|317466718|gb|ADV28450.1| protein of unknown function UPF0118 [Pseudoxanthomonas suwonensis
           11-1]
          Length = 378

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/340 (11%), Positives = 103/340 (30%), Gaps = 17/340 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +    +  +L+  +    PVL A+       P+                 IA + 
Sbjct: 39  SALLVLATLAVGYTLWAAQEVILPVLLAMFFALVGNPLIRLLRRLWIPR-----FIAALL 93

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L +     L    +        +     +      + L+                + 
Sbjct: 94  VLLLGLAGTTTLAVQLVAPATAWAEQAPREARKIGRELQNLTRPMHEANRIAEDMARAAA 153

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            ++ + +     + +    +     R     L          +  FFF   G ++ +   
Sbjct: 154 GEANRKVQVVRTRVDDPYAVLTRTPRLLAAVLAVI-------LLTFFFMVYGENLQRNAI 206

Query: 190 SLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGV 246
           +L        +   I + + + +    L +++I    GL+      L   P    +  G 
Sbjct: 207 ALLPGRQQKRFTVDILQSIEREVSRYVLTISLINAVVGLLFAGILVLLRFPLQEALLWGT 266

Query: 247 ITAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  ++   P   P+      + +  +       +    +   +   I  + + P ++G  
Sbjct: 267 MVMLLNYAPYVGPLIGMIAMLLVGFIRFDETLASVTPAVLYLVLHMIEGQLVTPIILGRS 326

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           + L  L     L+      GL+GL +   L+  + ++ ++
Sbjct: 327 MALSPLVLILALMLFGWLWGLVGLLLAVPLLVCVKLVLEQ 366


>gi|163736917|ref|ZP_02144335.1| hypothetical protein RGBS107_02203 [Phaeobacter gallaeciensis
           BS107]
 gi|161389521|gb|EDQ13872.1| hypothetical protein RGBS107_02203 [Phaeobacter gallaeciensis
           BS107]
          Length = 340

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 115/348 (33%), Gaps = 24/348 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +    + ++L+F K   APV+ A+++G    P+               A +   
Sbjct: 12  RIMLLIVTALALGLALFFAKPVLAPVIFAVVVGIVVSPLADRLQGIGVARVIVAASLLLF 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   + ++ L          +  +V  +    Q        +S +  G+ A         
Sbjct: 72  SCAIIVLLFL-----SLEPLISGVVEDLPKIKQEIKSWVYMMSGLLRGIEAIS------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q ++    T      +            +  ++   +   I  LFFF      I    
Sbjct: 120 --QEIEQTVGTGATGPDVSTGFPTLMDALWVAPNFGAQVFIFIGTLFFFVLTRTDIYAAA 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SLG+ L+ A  +         +   F  +T++  G G+         G+ S +  G+  
Sbjct: 178 GSLGKRLYRAEHE---------VARYFAAVTLVNAGLGVATAIGLATLGINSALIWGLAA 228

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  I    P+       ++ +       A            I  + + P  VG  + L
Sbjct: 229 MLLNFILYLGPLMMITGLTFVGMTQLGGAAALMPPALFLALNLIEAQFVTPAFVGHQLHL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             L  F  +V G+   G +G  +   +M  I  + + S  A +   E+
Sbjct: 289 SPLVVFLAIVFGLWIWGPVGAIVALPVMLWIGQLLRSSAEARRLQGEE 336


>gi|328948175|ref|YP_004365512.1| hypothetical protein Tresu_1307 [Treponema succinifaciens DSM 2489]
 gi|328448499|gb|AEB14215.1| protein of unknown function UPF0118 [Treponema succinifaciens DSM
           2489]
          Length = 365

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 107/335 (31%), Gaps = 20/335 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+ +  + +  V L     FF P+  AL++ F  +P   +    +        ++  + V
Sbjct: 13  ILLFAAIILATVILKITSSFFIPLTLALMLSFVFYPFVKNLTKFRIP-----WIVGIILV 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L  V    +    +   + +++           V   +++             H+   
Sbjct: 68  VILAAVAFFIIGNLLVASCRTVLNAYPKYEARFTTVYSLIAEAF-----------HIPFD 116

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++  ++   +       F+  FA             I+ + + + FF  +   + +++ +
Sbjct: 117 ENSSLIINLWNSLGVRTFVQNFALAASGYMFSTAKVILVIALFIVFFLIEIRGMKEKVKT 176

Query: 191 LGEHLFPAYWKK-ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                        I       +        +I+   GL++    ++ G+   +  G +  
Sbjct: 177 AFPEERLNRKIMFIITKTIAEVTRYISIKFLISFFTGLLVFLFCFIVGLDFAIIWGFLAF 236

Query: 250 IMAMIPGGAPISFTAV---SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I+  IP    I    +      L    +      + +      FI+   + P   G  + 
Sbjct: 237 ILNFIPTFGSILSWVLTTGFAVLQFYPSFGKILYVGIAVLAVNFILGNIIEPRWEGSDLG 296

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +        L       G +G+ +   ++ +I +I
Sbjct: 297 ISPFLILVSLSLWGWLWGFIGMILAVPILVIIKII 331


>gi|46907647|ref|YP_014036.1| hypothetical protein LMOf2365_1438 [Listeria monocytogenes str. 4b
           F2365]
 gi|226224020|ref|YP_002758127.1| hypothetical protein Lm4b_01428 [Listeria monocytogenes Clip81459]
 gi|254824521|ref|ZP_05229522.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|254829822|ref|ZP_05234477.1| hypothetical protein Lmon1_00635 [Listeria monocytogenes 10403S]
 gi|254852537|ref|ZP_05241885.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|254932604|ref|ZP_05265963.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|255521340|ref|ZP_05388577.1| hypothetical protein LmonocFSL_08960 [Listeria monocytogenes FSL
           J1-175]
 gi|300765772|ref|ZP_07075748.1| hypothetical protein LMHG_11889 [Listeria monocytogenes FSL N1-017]
 gi|46880915|gb|AAT04213.1| putative membrane protein [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|225876482|emb|CAS05191.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
           CLIP 80459]
 gi|258605846|gb|EEW18454.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
 gi|293584163|gb|EFF96195.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293593760|gb|EFG01521.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
 gi|300513547|gb|EFK40618.1| hypothetical protein LMHG_11889 [Listeria monocytogenes FSL N1-017]
 gi|328465467|gb|EGF36696.1| hypothetical protein LM1816_05950 [Listeria monocytogenes 1816]
 gi|328475017|gb|EGF45809.1| hypothetical protein LM220_07922 [Listeria monocytogenes 220]
          Length = 345

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/344 (12%), Positives = 103/344 (29%), Gaps = 25/344 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++  V +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKE 163

Query: 183 SISQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          ++++                   IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP    I     ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L+     LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|315230246|ref|YP_004070682.1| hypothetical protein TERMP_00482 [Thermococcus barophilus MP]
 gi|315183274|gb|ADT83459.1| hypothetical membrane protein [Thermococcus barophilus MP]
          Length = 346

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/353 (14%), Positives = 124/353 (35%), Gaps = 29/353 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     +   + + I+ +    ++   +P++ +L I +   P +     K     + + +
Sbjct: 1   MKTESLVWLGISLIILFLVWRTVEPLISPIIFSLAIAYIFHPFHMRLSQKFGNKKSAVML 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A ++++   ++    L                          R + +            
Sbjct: 61  TAMMALLAGVLLIGAAL------------------------WLRDVLNYLYVYIGDFFNW 96

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +       S   L     + +      +      + L  I  +   +    +   +
Sbjct: 97  LLGVNLPFGIGESLHALSKTIPEKLGDILLGYTFSLPKFLLQAIVFLALFYAILTNSEFL 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSH 241
           + ++  L           +       + +      ++++ +G+ L   + L     V   
Sbjct: 157 AMEVYRLLPRENRELGIHLVERAKITLNAILRTWLMLSVLKGIFLTVGFVLFEITTVSGA 216

Query: 242 VALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           +A G++  ++ ++P  G  I +   + YL+  GNI       ++GA+ +  I D T+RP 
Sbjct: 217 IAAGILCIVLELLPVIGGWILWAIGAAYLIKTGNIALGVLFAVYGAVFISPIPDITIRPK 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           LV    K+  +    G+ GG+ + G+ G+ IGPV + L+  + +E     KE 
Sbjct: 277 LVAEGAKVSSVVALVGIFGGIMSFGIKGVIIGPVALGLLVTLLEEWKEQEKET 329


>gi|15594352|ref|NP_212140.1| hypothetical protein BB0006 [Borrelia burgdorferi B31]
 gi|225549302|ref|ZP_03770275.1| membrane protein [Borrelia burgdorferi 94a]
 gi|8928456|sp|O51039|Y006_BORBU RecName: Full=UPF0118 membrane protein BB_0006
 gi|2687886|gb|AAC66397.1| conserved hypothetical integral membrane protein [Borrelia
           burgdorferi B31]
 gi|225370160|gb|EEG99600.1| membrane protein [Borrelia burgdorferi 94a]
          Length = 374

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 109/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +           +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 24  KPWRVESVFYCIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 79

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 80  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------- 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 131 -----------KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIH 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 180 VFEMKLDKAFKKPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 239

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V++ +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 240 VWAVLSFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPK 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 300 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLISYPFTVIVKVIV 342


>gi|325105490|ref|YP_004275144.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
 gi|324974338|gb|ADY53322.1| protein of unknown function UPF0118 [Pedobacter saltans DSM 12145]
          Length = 337

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 130/352 (36%), Gaps = 22/352 (6%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           +      ++  +++ + ++ L+ LKG+    L A++I     P Y+ F  K   S +  A
Sbjct: 5   SFKQRNNLVLIVLILMGILILFSLKGYITSFLGAIVIYTLFKPTYTLFNQKL--SKSISA 62

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
               +    + I+P   L Y    ++  L +           +  +           + +
Sbjct: 63  AFIILISFIIIIIPFFVLGYMITNKVMALRTDNFQLKAILYKINDFAGIHLNQPKLLDKY 122

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                                  + +      F     D  L ++ M   L+F +     
Sbjct: 123 LD------------------KLTNLVQELFPSFLGGAFDVFLGLVLMYFILYFMFVQSER 164

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
               L      L   + ++ +  +     S  +G  IIA+ +G ++  A+++AG+   + 
Sbjct: 165 FENGLIKYAP-LREYHTRQFAEELKNTTYSNVIGQGIIALIQGSLVSLAFFIAGLEDAIF 223

Query: 244 LGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            GV++  ++ +P    P+     ++ L + G+ +NA  + ++  + L  +D  +R  +  
Sbjct: 224 WGVVSVFLSFMPVIGAPLVTLPAAVILYLNGDHYNAIFIVMFTLLILINIDNVIRFMINK 283

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                  + T  G++ G+   G +G+  GP+L+     +       IK   +
Sbjct: 284 HFADTHPIVTVIGVIIGIPLFGFVGIVFGPLLLLWFMHLIAIYEDDIKAENK 335


>gi|291442208|ref|ZP_06581598.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
 gi|291345103|gb|EFE72059.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
          Length = 293

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 57/167 (34%), Gaps = 1/167 (0%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             R    + + L SL          +   I             + A+   +       L 
Sbjct: 99  LRRGWPRLRRALCSLLPPAKQTEVLRAWEIAVDKTSGYLYSRGLRALISAVARFIMLALL 158

Query: 237 GVPSHVALGVITAIMA-MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            VP  +AL V   +++  IP        A+ +     G+++ A  + ++  +     +  
Sbjct: 159 DVPYALALAVWVGVVSQFIPVIGTYLAAAMPMLAAFAGDLWYAVVVLVFVVVYQQFENYL 218

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++P L    + +  +  F  ++ G   +G++   I    +A +   +
Sbjct: 219 IQPKLTSKTVDIHPVVAFGSVIAGTALLGVVDTLIAIPAVATLQTFF 265


>gi|195952761|ref|YP_002121051.1| protein of unknown function UPF0118 [Hydrogenobaculum sp. Y04AAS1]
 gi|195932373|gb|ACG57073.1| protein of unknown function UPF0118 [Hydrogenobaculum sp. Y04AAS1]
          Length = 353

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 54/354 (15%), Positives = 133/354 (37%), Gaps = 7/354 (1%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M +            ++ +I++++Y +  FF P++ ++I     +P++       + S  
Sbjct: 1   MLKKDKTINIGFTVFLIILIILAIYTIAPFFTPIVWSMIAIIVFYPLHKKLSHILK-SEN 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGG 116
             ++I T+ ++ + ++P        + +   LV      ++  +Q  + +      I G 
Sbjct: 60  LSSLIITILILLIVVIPFSVFGVLIIEQGIYLVQNASAFIMSLDQQKVYLISKKLPIIGK 119

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                 + + L         +   + T    F+        +    + L  +  +++ FF
Sbjct: 120 HITYYKFLRFLHLNAPTINQAANSILTYAASFLGDQLKNMVLFLGSFMLKALIFLMSTFF 179

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             RD       +  +        +  I + V   + S   G    A+ + +     Y+  
Sbjct: 180 MLRDWDKFIDFVKDITPMNTKD-FDTILKTVYSTVLSVVYGFVGTALIQAIFGFFMYYYF 238

Query: 237 GVPSHVALGVITAIMAMIP-GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
                + L  IT + + IP  G  + +     Y+  +  +  +   F +  + +   D  
Sbjct: 239 TPNYALVLAFITFMSSFIPPLGTALVWIPYGFYVAYQNGLLASLEAFAYSILFIIGSDNF 298

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +RP L+   I +P++     ++GG+ +MG LG+F+GP++   +   +       
Sbjct: 299 VRPLLMKKAIHIPYILLSLSVLGGLFSMGFLGMFLGPIVFTTLITAFNIYKEKF 352


>gi|315645830|ref|ZP_07898951.1| hypothetical protein PVOR_10189 [Paenibacillus vortex V453]
 gi|315278591|gb|EFU41905.1| hypothetical protein PVOR_10189 [Paenibacillus vortex V453]
          Length = 389

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 92/317 (29%), Gaps = 4/317 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +++++     L    APV  + ++     P+      +      F A I+ +  +
Sbjct: 17  LIVLTVYLVMYIFSKLYQIAAPVFLSFLVFLIIEPLSKFLHRR-GLPKPFAAAISVLLFL 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +  L       + +   L   +            +   +       E     L+   
Sbjct: 76  LIILGILFGAGALIVSQFMNLQENLPAYTATIQK--HFSEGLIFLQSKLEALPPDLTERV 133

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +      T       +    +   F   F  +  S    II  FF   +  S  +     
Sbjct: 134 NGYFQDITAFAQGAAESFFHYIVGFMGSFSSFITSFGVAIILAFFLSIEIGSWRRIAKEK 193

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F   +  +   V K I S       +     +++     + G  + +++ +I A+ 
Sbjct: 194 TPKTFKMAFVFLKENVFKAIGSYLKAQMKLVSITFVIVYIGLLILGTGNSLSIALICAVF 253

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P           I  L            +     + I  + L P + G  I +    
Sbjct: 254 DVLPLLGVPVILIPWIVYLFIVGNTGLAIGLIVLLAVVMISRQLLEPKITGNSIGVSSAF 313

Query: 312 TFFG-LVGGVRTMGLLG 327
                ++  +   G+ G
Sbjct: 314 LMLSFMMISLSIFGVAG 330


>gi|268318605|ref|YP_003292261.1| hypothetical protein FI9785_106 [Lactobacillus johnsonii FI9785]
 gi|262396980|emb|CAX65994.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus
           johnsonii FI9785]
          Length = 349

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 105/341 (30%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFL 62
                  + R + + +I++ LY  +     +L   I  +    +      K     +  +
Sbjct: 7   KFKENTTVHRLVALCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKMPRLPAQVI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+A + V+ L    +       + ++ ++   ++   Q                   ++
Sbjct: 67  VVLAYLLVIALIYFAITIYVPILIKQIIKMSHSLIKFYQS-----------------DDM 109

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +     T    +G+  +    + FG + + + +S+I              
Sbjct: 110 NWVSRYLSHYISNSEITTQAKHGVTILVHALTNFGTLTIAFFMSLIMSFFYTIELNSMTE 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S                              IA+    +      +  +P  +
Sbjct: 170 FSHTFLQSRHLSWLFEDVAYFGSKFVNTFGVVLEAQFFIALCNTAMTIICLIIMRMPQII 229

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I+++IP    I     +S+     G +     +F+   I   I    L P  +
Sbjct: 230 ALGLMVFILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFM 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 290 ASKTELPIFYTFVVLLVGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|169829929|ref|YP_001700087.1| hypothetical protein Bsph_4506 [Lysinibacillus sphaericus C3-41]
 gi|168994417|gb|ACA41957.1| UPF0118 membrane protein [Lysinibacillus sphaericus C3-41]
          Length = 350

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/345 (13%), Positives = 97/345 (28%), Gaps = 23/345 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----FISKKEES 58
                  G  R++I+  I ++LY ++     +L   II +    + +            +
Sbjct: 2   SKFFQSNGFKRFIILVGIAIALYLMRSMINLILLTFIITYLMNQLTTKTTKSIRKYTPMN 61

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              + V   + ++   +  +         ++ +L   +   N           +      
Sbjct: 62  EKAVTVTLYLLLVAGIVAVIYKYLPIVTQQVTQLFDLIASFN------LDPDDNEIARYL 115

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           A       L       +       TN    I +      +           +     F  
Sbjct: 116 APTFEKIELGKYLEQGVDITLKNITNIGKIIMQILISLILSLFILLEKKRIIEFTAKFKD 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                +  +L+                              IIA    ++   A  + G 
Sbjct: 176 SKIGPLYDELNYFSRIFIR------------SFGKVIEAQFIIAAVNCVLSVIALSIMGF 223

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLR 297
           P  +ALG++  I+ ++P    I        +    G +     + +   +   I    L 
Sbjct: 224 PHLIALGIMLFILGLVPVAGVIISLIPLSIIAYSIGGLMYIVYILVIVMVLHAIEAYFLN 283

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           P L+     LP   TF  ++     +G+ GL IG  L   +  I 
Sbjct: 284 PKLMSAKTDLPIFYTFMVILFSEHFLGVWGLIIGIPLFMFLLDIL 328


>gi|87123583|ref|ZP_01079434.1| hypothetical protein RS9917_06970 [Synechococcus sp. RS9917]
 gi|86169303|gb|EAQ70559.1| hypothetical protein RS9917_06970 [Synechococcus sp. RS9917]
          Length = 349

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 97/294 (32%), Gaps = 13/294 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F    L++ +I F           +         +I T+  +   ++  + L    +
Sbjct: 30  LAPFPGLFLTSALIAFLLDIPSRWLNRR-GLPRWSAILIVTLVTVGGVVLAGVTLVPRLI 88

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ +L++ +             L D+         +    S   +          +   
Sbjct: 89  DQLAQLINALPGWLVAAEAWINRLQDLAASRGLPSEFGDLSSDLLT--------RVSRVA 140

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +         L   ++ + +++   FF   G +I+  L       +      +   
Sbjct: 141 SQLSQRLLAILGATLGITINTVIVLVLAVFFLLGGDAITAGLARWLPERWRQL---VVST 197

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G  ++A+         + + G+P  V   V+  +  +IP  + ++  AVS
Sbjct: 198 ITRTFRGYFAGQVLLALILSAGQIVVFTVIGIPYGVLFAVVIGLTTLIPYASALTIVAVS 257

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             L ++ +      +         +VD+ ++P L+G  + L        L  G 
Sbjct: 258 ALLAVQ-DPRTGLEILAAAIGVGQVVDQVIQPRLMGSIVGLQPAWLLIALPLGA 310


>gi|228920656|ref|ZP_04084000.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228839021|gb|EEM84318.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 337

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 112/343 (32%), Gaps = 19/343 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K +     +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVDRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIVKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKMFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                LP   TF  L+     +G+ GL IG  +   +  +   
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVLDI 329


>gi|118602640|ref|YP_903855.1| hypothetical protein Rmag_0639 [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567579|gb|ABL02384.1| protein of unknown function UPF0118 [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 360

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 73/355 (20%), Positives = 144/355 (40%), Gaps = 16/355 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
             G M  ++   I   ++    F + +  +L+I  T++  Y    ++   SS   A++ T
Sbjct: 10  EHGFMLSLLFLAIGGLIWLFTPFISALFLSLMIAITTFSKYEQLQNRF--SSNNSALLTT 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V  + I+PL ++     LE+  L+  +     H +   +    +   +    L     
Sbjct: 68  LLVTIVLILPLGYILLISTLEISTLIQTI----NHDLNFDKITQILNQTVTKLPLSDFIK 123

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +   S    +   L     DF          +   + L +I +I  L++FY DG  I  +
Sbjct: 124 NTLSSTLNNNLEALFIGVKDFSIVILKSIVSLSSHFILFLIIVIFTLYYFYIDGKKIVTR 183

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + SL   L       +      +  +    + +IA+ +G++      + G+P+      +
Sbjct: 184 IKSLSP-LEAHLNNILLNQFKNLSITLVGSVFLIALLQGMIFSITIIIIGLPALYFGIAM 242

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV----- 301
                +   G  I +  +S+YL  +G I +A  + L GA+ + FIVD   RP ++     
Sbjct: 243 AMASFIPLLGGLIIWLPLSLYLYAQGQITDALIVALSGAVVIGFIVDNLARPSIIKFLSK 302

Query: 302 ---GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
              G       L T    + G+   G+LGLFIGP++ A+   I+    +   +++
Sbjct: 303 KSNGTNTLDHTLITVLSTLSGIIQFGILGLFIGPIIAAMAISIFDIYSIRYNKDR 357


>gi|325959136|ref|YP_004290602.1| hypothetical protein Metbo_1390 [Methanobacterium sp. AL-21]
 gi|325330568|gb|ADZ09630.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 349

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 124/333 (37%), Gaps = 10/333 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L    + +L   +I +    +            T    +A + +    ++   F  +  
Sbjct: 26  ILFQILSLILFGAMIAYIVRHLAGKLHPFVRF-ETLAIFLAMIILAVPIVLVAYFTIHQL 84

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            L   ++   +   N +   + + +                ++   +  +     L    
Sbjct: 85  FLVAVDITGALPAPNTNTTMINQTMVSNDVQSAGP------INGVAANLLDEIANLVAQS 138

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + ++      F          +I ++ ++F+F ++G      ++ L        + +I  
Sbjct: 139 VVWLVGQIISFVASLPALFTDVIVLLFSVFYFAKEGDKFVGFIEDLLPKT--PTFSEIYS 196

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            V  +++S  +   + A+  GL+    Y++ G P  + LG++TA    +P   P      
Sbjct: 197 EVDAILKSIMITNILCAVILGLLSVVLYYILGYPYILLLGILTAFSEFVPVVGPWIVYGA 256

Query: 266 SIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              + ++ GN      + + G +   +VD  +RP L G    +  L    G + G  T+G
Sbjct: 257 LGVVDILTGNPVRGVIVIVVGWLIDTVVDMYIRPKLAGEFTNVHPLIFLVGFLFGALTLG 316

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           L GLFIGP+++ +  V++++      +  ++  
Sbjct: 317 LPGLFIGPLIVGVTYVLFEKYREERLKINQQTK 349


>gi|21229405|ref|NP_635327.1| hypothetical protein MM_3303 [Methanosarcina mazei Go1]
 gi|20907998|gb|AAM32999.1| hypothetical protein MM_3303 [Methanosarcina mazei Go1]
          Length = 366

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 97/321 (30%), Gaps = 19/321 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++  L+  + + PI   F           A++A++ +    +  +       + +    +
Sbjct: 44  IVLGLVFAYIARPIQVKFGKY----RKIGALVASLCIFVPIVFIIGAGIVEILNQFSWFI 99

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
                     +     L                 ++ + L         +    F     
Sbjct: 100 ENQASVMNGILEFIHSLQ-------------IPDAYVERLNNAIWNLFTSLLPAFGSIGL 146

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             +      + ++ +  I   +F   DG  +      +    +     + +  +  +++ 
Sbjct: 147 IAYAQSIGLFVINFVISIFFCYFLLADGDRLYCAFLGVIPGDYQPIVNRYAAHLDLILKG 206

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL--LI 271
            F+G    A+   +     ++  G    +AL  +  I ++IP  A          +    
Sbjct: 207 VFIGNAYSALIVSVTSVFVFYAFGFTHVLALATLIFIASVIPLFAGYMVLVPLAIVRYFD 266

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +G    +    +   +     +  LRP+L     K+  +      +GG    G+ G F  
Sbjct: 267 QGVESASLFFIVSSLVIYGPPELILRPYLTSLKSKIHPMLLMLAFLGGAFVGGIAGFFAA 326

Query: 332 PVLMALIAVIWKESIMAIKEN 352
           P+L+  +   ++     I   
Sbjct: 327 PILLGALVAAYRVYQEQIHPE 347


>gi|222824271|ref|YP_002575845.1| acid membrane antigen A [Campylobacter lari RM2100]
 gi|222539492|gb|ACM64593.1| acid membrane antigen A [Campylobacter lari RM2100]
          Length = 347

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 123/352 (34%), Gaps = 21/352 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M +    +   I+FI+   L+  K F   +  A ++  ++  +   F+S  +      A 
Sbjct: 1   MKSSNFFLISFILFILFWVLFLFKPFLMNIAIASLMAVSTSNVNVKFLSIFKGKKVIAAA 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
             T  ++ LF +P ++               +   +        +   +P  +   E   
Sbjct: 61  ATTTFMLALFFIPFVYAIIELAKAASGF--NISYIHNTIEYFKNYSLHLPESLSFIEP-- 116

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +K    +    +    +  + S        +   ++ + +  FF    G  +
Sbjct: 117 -------KIKEALASIDLNSISKDVLTYLSSATKFGTKFLTDMVLICVFYFFANLYGAQL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + ++         + I   V  V+   F  M + AI +G++        G  + +  
Sbjct: 170 IGYIKTIVPMK-KEETQGILSEVSNVMSVVFYSMVLNAILQGVLFAIITKFYGYDAILMG 228

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI-ELFIVDKTLRPFLVGG 303
            +      +   G  + +  VS+Y     N+  A  +F++  +   FI D  ++P+++  
Sbjct: 229 ILFCFSSLIPVVGGALIYVPVSLYEFANNNLSGALVIFIYSVVMISFIADTLVKPYIIKW 288

Query: 304 P--------IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
                     ++  L  FF ++ G+ + G  G+ +GP ++       K  ++
Sbjct: 289 INEKLVQIPTQINELLIFFAMIAGISSFGFWGIILGPAILTFFISTLKLYVI 340


>gi|300865333|ref|ZP_07110144.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300336636|emb|CBN55294.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 368

 Score = 86.6 bits (213), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/346 (11%), Positives = 117/346 (33%), Gaps = 17/346 (4%)

Query: 6   LNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
              Q ++ W+++ +        ++++    + +++A +I F      +            
Sbjct: 7   PVQQFLITWLLVLVTGWFTLGAIHYVAELISILVTAGLIAFLLNYAVARLQ--VFLPRGA 64

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A +   +   +  V +L +    + +  +L  +     + G                  
Sbjct: 65  AAALVYFAAGLVMAVIVLTIAPPVLNQAAQLAVRFPDLLESGRQQLAEFQIWSA------ 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
              ++L     +     +      +  I        +  +++ L +I +++  F+   DG
Sbjct: 119 --ERNLPFDVQILEQQLSAKVQEQVQAIAASGLGLVVGTVNWFLDLILILVISFYMLLDG 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             + + L S+           ++  + + ++    G  ++ +   + L   +W+  VP  
Sbjct: 177 ERVWRGLTSIFAPEIRYV---LTETLERNLQRFVSGQLLLGLFMAIGLTLVFWVLQVPFF 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   V   ++  IP             ++   + + A  + +       + D  + P ++
Sbjct: 234 LLFAVFIGLLEAIPFIGATLGIGAVSIIVAFIDWWLALEVLVAAIALQQVKDNLIAPRIM 293

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           G       +  F  L+ G R  G+LG+ +   L  ++  I +  + 
Sbjct: 294 GSLTGFSPVVIFAALLLGGRVGGVLGVILAIPLTGVVKSIVEILLN 339


>gi|290894088|ref|ZP_06557061.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
 gi|290556343|gb|EFD89884.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
          Length = 345

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 102/344 (29%), Gaps = 25/344 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYALIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKD 163

Query: 183 SISQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          ++++                   IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNTILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP    I     ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L+     LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|239905742|ref|YP_002952481.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
 gi|239795606|dbj|BAH74595.1| hypothetical membrane protein [Desulfovibrio magneticus RS-1]
          Length = 394

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/340 (19%), Positives = 125/340 (36%), Gaps = 4/340 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + +  +      L  F   V+ A I+     P+     +  + S    A + T + 
Sbjct: 51  FLLLVFLAAVATVGGLLWPFRHAVILAAILAILLSPLRRRMEAALKGSRYLTAALLTAAT 110

Query: 71  MCLFIVPLLFLFYYGMLEMKEL-VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +   ++P   L      +   L V  V   ++ G+                +     +  
Sbjct: 111 LIFIVLPAAVLAAVLTSKAGALLVEGVQWWSEGGVASLLDRLQAVALPDWVQGLLDMIPI 170

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                 +S           +             +    + +++ LF+F      + + L 
Sbjct: 171 DSQGLKVSLLGAAGAAGRQLLAMGRGLAGQMAGFAAQTVMLVLFLFYFLSQAEQVVRGLR 230

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L   L  +  ++++  +  V RS  +G     + +GL      WL G+   +  G +  
Sbjct: 231 LLSP-LRRSQEQELTERLKTVTRSILVGGAAAGLSQGLATMLGLWLVGID-PLFWGFVAL 288

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + ++IP     +      +YLL  G +  A  L LW  + +  VD  +RPF +    +LP
Sbjct: 289 LASLIPVVGTTLIHVPAIVYLLSLGAMGKAVFLTLWWLVVVSTVDNVVRPFFIRDGAQLP 348

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            L  F  ++GGV   G LGL  GPV M+L  V+++  + A
Sbjct: 349 LLLIFVAIIGGVLLFGPLGLIYGPVSMSLCLVVFQLFVEA 388


>gi|163740660|ref|ZP_02148054.1| hypothetical protein RG210_11172 [Phaeobacter gallaeciensis 2.10]
 gi|161386518|gb|EDQ10893.1| hypothetical protein RG210_11172 [Phaeobacter gallaeciensis 2.10]
          Length = 340

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 115/348 (33%), Gaps = 24/348 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +    + ++L+F K   APV+ A+++G    P+               A +   
Sbjct: 12  RIMLLIVTALALGLALFFAKPVLAPVIFAVVVGIVVSPLADRLQGIGVARVIVAASLLLF 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   + ++ L          +  +V  +    Q        +S +  G+ A         
Sbjct: 72  SCAIIVLLFL-----SLEPLISGVVEDLPKIKQEIKSWVYMMSGLLRGIEAIS------- 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
             Q ++    T      +            +  ++   +   I  LFFF      I    
Sbjct: 120 --QEIEQTVGTGAAGPDVSTGFPTLMDALWVAPNFGAQVFIFIGTLFFFVLTRTDIYAAA 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            SLG+ L+ A  +         +   F  +T++  G G+         G+ S +  G+  
Sbjct: 178 GSLGKRLYRAEHE---------VARYFAAVTLVNAGLGVATAIGLATLGINSALIWGLAA 228

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  I    P+       ++ +       A            I  + + P  VG  + L
Sbjct: 229 MLLNFILYLGPLMMITGLTFVGMTQLGGAAALMPPALFLALNLIEAQFVTPAFVGHQLHL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
             L  F  +V G+   G +G  +   +M  I  + + S  A +   E+
Sbjct: 289 SPLVVFLAIVFGLWIWGPVGAIVALPVMLWIGQLLRSSAEARRLQGEE 336


>gi|254443202|ref|ZP_05056678.1| conserved domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
 gi|198257510|gb|EDY81818.1| conserved domain protein, putative [Verrucomicrobiae bacterium
           DG1235]
          Length = 287

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 75/282 (26%), Gaps = 19/282 (6%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++   +    L  LF +    + E+++          P+   +           L     
Sbjct: 1   MASALVIAAALGALFNFITQNVTEVINVAPEYQARLQPLIGKVISWLPIEEPPSLREFVG 60

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                           +    I R AS    I  +  +  I++I         G  I   
Sbjct: 61  QF--------------DFSTIISRLASSLASIAGNASIISIYVIFLFLEQRSFGPKIKAM 106

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                         +I   +    R+     T+ +   GLV        G+      GV+
Sbjct: 107 TR---GTDSSKNIFEIISEINADTRTYIGIKTLTSAITGLVSFGIMAAIGLDFAAFWGVL 163

Query: 248 TAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              +  IP    I  T     L  L          +         +V   L P L+G  +
Sbjct: 164 IFFLNFIPTVGSILATIFPSLLSLLAFDTPLPIVGIIGGVVATQVLVGNVLEPRLMGNSL 223

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
            L  L     L       G+ G+F+   +  +  +I      
Sbjct: 224 NLSPLVILLSLSFWGALWGVTGMFLCVPITVITMIICSHFPQ 265


>gi|194467197|ref|ZP_03073184.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
 gi|194454233|gb|EDX43130.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
          Length = 370

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 50/361 (13%), Positives = 119/361 (32%), Gaps = 24/361 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLY------FLKGFF---APVLSALIIGFTSWPIYSSF 51
           M++ +      +   +  + L   Y      F++  F    P+L   I+ +    +   +
Sbjct: 1   MKQYINRRHISLVLALFVLYLAITYWEIVAKFIQTIFSATVPLLIGGIVAYIVNLLLRQY 60

Query: 52  ISKK----------EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
                         +       V++ ++++ +  +    +    +  +K L++       
Sbjct: 61  EHLYLYLFKKPSAQKFRRPVGIVMSYLTIILIITIVFALVIPELITCVKLLIANHSHIIN 120

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
           H I      SD  G + + +                        I       S      +
Sbjct: 121 HFIDYFEHSSDFKGFINSFDASKIQWDKIGKYLTSGVGGTFRTVISTASSVFSAATTAVI 180

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            +  SI  +I      ++    +S          + +   K+ ++  +   +  +G    
Sbjct: 181 AFFFSIYLLIYKEMLQHQFTKLLSTYFSR-----YQSQIIKVLKVFDESYSNYIVGQCKD 235

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           A   G+       +  +P    +GV+TA  A+IP    I   +V + ++   +   A   
Sbjct: 236 AAILGISCFIGMTILRMPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIF 295

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            ++  +   + ++   P +VG  I LP +  F  ++ G    G+LG+     L A +  +
Sbjct: 296 LIFIILLQQLDNRITYPLVVGRSIGLPSVWVFAAVIIGGGISGILGMMFTVPLFAALYKL 355

Query: 342 W 342
            
Sbjct: 356 L 356


>gi|327398674|ref|YP_004339543.1| hypothetical protein Hipma_0513 [Hippea maritima DSM 10411]
 gi|327181303|gb|AEA33484.1| protein of unknown function UPF0118 [Hippea maritima DSM 10411]
          Length = 352

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/338 (11%), Positives = 119/338 (35%), Gaps = 10/338 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I    ++  + +  + L      V  + +I   S+P  +  + + +       +     +
Sbjct: 14  IFLIFLIGGVYLLFFKLTFVTIVVFLSYLIAEISYPFENMLL-RFKIPRWLSGLFVLTII 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M   +  L       + ++  +  ++    +        L       +++       S  
Sbjct: 73  MGSTVFILTITVPALISQISGIEKQLPTLLEGIKNSINNLYSYMSLKFSN-------SSA 125

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +  + S        +      +    +  +   ++++ + I  FF           + S
Sbjct: 126 VNQILSSAVDSVKKYLIDFAVNSLTGLIKGVSGLVALLLIPIISFFMIIYRQKYKLVIKS 185

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +   +    +  + + +  VI S  +G+ I+ +    +  +  ++ GV   +  G++  +
Sbjct: 186 IILTVLGEDYLSVFQDIHNVIISYIVGLVILMVVVSALGIAGLYIVGVDYALLFGILGGV 245

Query: 251 MAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + +IP    I      I   LL+  ++  +  +        FI    + P++    ++L 
Sbjct: 246 LYIIPYLGAIVSFIPPILVALLVHHSLIMSVEVLTVLLFIHFISGNIIAPYIYSRQLELD 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            L     ++   + +G+ G+ +   L+ +I V +++ +
Sbjct: 306 PLAVLLSILFFGKLLGVWGVILSVPLLGIIVVSYEKLV 343


>gi|255027621|ref|ZP_05299607.1| hypothetical protein LmonocytFSL_16972 [Listeria monocytogenes FSL
           J2-003]
          Length = 345

 Score = 86.6 bits (213), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 102/344 (29%), Gaps = 25/344 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYALIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKE 163

Query: 183 SISQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          ++++                   IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP    I     ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L+     LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|253573458|ref|ZP_04850801.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846986|gb|EES74991.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 358

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 109/324 (33%), Gaps = 20/324 (6%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK----KEESSTFLAVIATVSVMCLFIVPLLF 80
           YF +     +L   I+ +    +++            + T   +   V ++ L    + +
Sbjct: 27  YFARSMLNMLLITFILTYLINRLHNFISRNVAKVIRINRTVTVLFIYVVLITLLGSAIYY 86

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                + E+ +LV++V+    +   +P          +  ++                + 
Sbjct: 87  YMPVLLTELTDLVNQVISFYSNPPVLPDNPILNYIVEYLKDIDL--------------SA 132

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
              NG  F+    +  G   L+  ++I+  +  L    +      Q  +S    LF    
Sbjct: 133 YINNGFTFLLSTLTDIGEWSLNLFIAIVLSLFFLLEKEKVTNFAVQFRESRIGGLFKEL- 191

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +   R   +          +IA    ++     W+ G P+ +AL ++  ++ ++P    I
Sbjct: 192 EYFGRKFVQSFGKVIEVQFLIATVNAVLSTIFLWILGFPNLIALAIMIFLLGLVPVMGVI 251

Query: 261 SF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                +       G +     + +  A+   +    L P  +     LP   TF  L+  
Sbjct: 252 ISLIPLCAIAFKIGGLIKIVYVLIMIALVHAVETYFLNPKFMSNKTHLPIFFTFLILLVS 311

Query: 320 VRTMGLLGLFIGPVLMALIAVIWK 343
              +G+ GL +G  +   +  I +
Sbjct: 312 EHFLGVWGLIVGVPIFIFLLDIVE 335


>gi|271963472|ref|YP_003337668.1| permease-like protein [Streptosporangium roseum DSM 43021]
 gi|270506647|gb|ACZ84925.1| permease-like protein [Streptosporangium roseum DSM 43021]
          Length = 350

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 111/346 (32%), Gaps = 24/346 (6%)

Query: 1   MRETMLNPQGIMRWMI---MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE 57
           M +    P+ ++  +      + L  +  +     PVL AL++     P+ +    +   
Sbjct: 1   MTDQRSVPRALIVLLCTAGAVVTLAGIREVGSIVGPVLLALVLVLAVSPVRTWLQRR--G 58

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           +  +  V   ++++ L +  ++ +    + E   L S         +   + L+   G  
Sbjct: 59  APGWTLVAVPLALVLLLLFGMVAILTVAVAETANLASTYGPEFNRLVTGLQNLATRFGVG 118

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                                  +K+  +  +      F    L    S++ +++ L   
Sbjct: 119 T----------------EQVNQTIKSFDLGKVFALVQGFASGLLGLFSSLVLIVVLLLAM 162

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             D    S+ L             +         R   +  T+  +   ++  +A W+ G
Sbjct: 163 CLDAQPFSRVL--AAGAASRPLLVRALGDFAHKTRRYLVVSTVFGLICSVLDVAALWMLG 220

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTL 296
           VP  +  GV+  I   IP    I        L L++G       +        F+V   +
Sbjct: 221 VPLPLLWGVLALITNYIPNLGFILGLIPPALLGLLEGGPKTMIFVIASYIAINFVVQSLI 280

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +P  +G  + L    T   L+     +G LG  +   L  L   + 
Sbjct: 281 QPKFLGDAVGLSTTMTLLSLLVWAFVLGPLGALLAIPLSLLARALL 326


>gi|217964433|ref|YP_002350111.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|217333703|gb|ACK39497.1| conserved integral membrane protein [Listeria monocytogenes HCC23]
 gi|307571002|emb|CAR84181.1| membrane protein, putative [Listeria monocytogenes L99]
          Length = 345

 Score = 86.2 bits (212), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 102/344 (29%), Gaps = 25/344 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       +
Sbjct: 5   SSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQII 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    +  + I   +        ++ +LV                             
Sbjct: 65  VLLLYALIAVVIIFVFVKYIPVLADQINQLVKFGNTFLTT-------------------- 104

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              +      +  L+  F      +        +        +++   ++   FF     
Sbjct: 105 -DSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKE 163

Query: 183 SISQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            +    +          ++++                   IIA+   ++   A W+ G P
Sbjct: 164 HLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFP 223

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             + L ++  ++ +IP    I     ++I     G +     + +   I   +    L P
Sbjct: 224 QLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            L+     LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 284 KLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|260101818|ref|ZP_05752055.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|260084372|gb|EEW68492.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
 gi|328468753|gb|EGF39727.1| putative permease [Lactobacillus helveticus MTCC 5463]
          Length = 344

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 107/344 (31%), Gaps = 19/344 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R+++  II+  LY ++     +L   I  +    +         +  +  
Sbjct: 6   QKFKNNIPLRRFVVFLIIVAFLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYVPKMPTGA 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+  + ++ L    +       + ++ ++V  V+   +                   E
Sbjct: 66  IVVVTYLIILALLYFFITVYMPMLVGQISKMVKSVMAFYES-----------------DE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +          + + F    A+  G + +   +S+I          +  
Sbjct: 109 SSRLLSYATHYISKNEIITQAKHAMTFAFHTATSIGTLTITTFMSLILSFFYTIELKKMR 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  + S          +   +               IAI    +      +  +P  
Sbjct: 169 EFSSLFVKSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           VALG++  I++++P    I     +SI     G I  A  +F+   I   I    L P  
Sbjct: 229 VALGLMVFILSLVPVAGVIISLIPLSIVGYSVGGIRYAIYIFVMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +    +LP   TF  L+      G  GL +G  +   +  +   
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLNI 332


>gi|313618959|gb|EFR90805.1| membrane protein YdbI [Listeria innocua FSL S4-378]
          Length = 345

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 99/339 (29%), Gaps = 19/339 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + +   +        ++ +LV       +                  +E   
Sbjct: 67  LLYVLIAGVIVFVFVKYIPVLADQINQLVKFGNSFLKT--------------DSNNEFIN 112

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +S      I+  T    + I           M      +  +F  +            
Sbjct: 113 YIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKDHLISFTNQF 172

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S               K                  IIA+   ++   A W+ G P  + L
Sbjct: 173 STSKIGFIY----EEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLMTL 228

Query: 245 GVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  ++ +IP    I     ++I     G +     + +   I   +    L P L+  
Sbjct: 229 SIMVFLLGLIPVAGVIISLIPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLMSA 288

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 289 KTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|300785154|ref|YP_003765445.1| hypothetical protein AMED_3253 [Amycolatopsis mediterranei U32]
 gi|299794668|gb|ADJ45043.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
          Length = 336

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 83/302 (27%), Gaps = 27/302 (8%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +         V  A  +     P+ +    +        A +  V+ + +    +    
Sbjct: 33  LILTASDVLLLVGIAFFLAVGLEPVTARLARRM--PRALAAAVVVVTGLAVLGGTVAAAA 90

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +  +L +               L                                
Sbjct: 91  VPLADQATQLRNGAPRYLTLLRDHGTLLGRANETFGLEAAVRSV---------------- 134

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                      S             + +++   +F  D   I   L  L           
Sbjct: 135 ---------QLSDVAKSLAALLGDAVIVVVLATYFVADFPRIRTALYRLAPRSRRPRVIL 185

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   V + + +  +G   +++  G    +     GVP  + L V+ A++ ++P    ++ 
Sbjct: 186 IGDAVFRKVGAYLVGNVAVSLIAGAATFAWLSAFGVPYPLVLAVLVAVLDLVPVAGSVAA 245

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            A +  + +  ++        +      + D  L P +VG  +++P L T   ++ G   
Sbjct: 246 GAGTTLVALTVSVPVGLATLGFFVGYRVVEDYVLLPKIVGRAVRIPALVTVVAVLLGYAL 305

Query: 323 MG 324
           +G
Sbjct: 306 LG 307


>gi|42518127|ref|NP_964057.1| hypothetical protein LJ0041 [Lactobacillus johnsonii NCC 533]
 gi|41582411|gb|AAS08023.1| hypothetical protein LJ_0041 [Lactobacillus johnsonii NCC 533]
          Length = 349

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 47/341 (13%), Positives = 105/341 (30%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
                  + R + + +I++ LY  +     +L   I  +    +      K     +  +
Sbjct: 7   KFKENTTVHRLVTLCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKIPSLPAQVI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+A + V+ +    +       + ++ ++   ++   Q                   ++
Sbjct: 67  VVLAYLLVIAIIYFAITIYVPILIKQIIKMSYSLIKFYQS-----------------DDM 109

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +     T    +G+  +    + FG + + + +S+I              
Sbjct: 110 NWVSRYLSHYISNSEITTQAKHGVTILVHALTNFGTLTIAFFMSLIISFFYTIELNSMTE 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S                              IA+    +      +  +P  +
Sbjct: 170 FSHTFLQSRHLSWLFEDVAYFGNKFVNTFGVVLEAQFFIALCNTTMTMICLIIMRMPQII 229

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I+++IP    I     +S+     G +     +F+   I   I    L P  +
Sbjct: 230 ALGLMVFILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFM 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 290 ASKTELPIFYTFVVLLVGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|212697463|ref|ZP_03305591.1| hypothetical protein ANHYDRO_02033 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675547|gb|EEB35154.1| hypothetical protein ANHYDRO_02033 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 386

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 105/321 (32%), Gaps = 5/321 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+I     P               ++ +    ++ L +  L++   + + ++  
Sbjct: 36  MPIILALVIVGLLAPSIRKIDHILPIKHKAVSYLLGTILLLLLLFFLVWFVQFIVNQVSG 95

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           LV  ++      +       +          +  +  +             L+ N I+  
Sbjct: 96  LVGNIISNWDKIVSSVNTWINDANSQINLMPDYVSNTIRSGLKSLYEWLGSLQKNAINIT 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F   F     +    +I  ++A +    D  ++  +   L           I  +   
Sbjct: 156 FGFTQAFINTSNEIIFFVITFVVAFYIILGDMQNVYDKYHLLIPEKSKNNLSLIRAVFKN 215

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY- 268
              +       +A    +++    +  G    + + +I   + ++P   PI         
Sbjct: 216 STWNYIKSQLKLAFLCTIIMAIFLFFIGQQYFMPIALILGFVDLLPMIGPIIVLLPWSII 275

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LLI  N   +  L +       +  + + P ++G    +  + +   L  G++  G++G
Sbjct: 276 ELLIFDNTIKSLGLLIVLTAWTGL-RQVIAPKVIGSSADIHPILSVIALYAGLKLFGVMG 334

Query: 328 LFIGPVLMALIAVIWKESIMA 348
             + PV+   I  I++  I+ 
Sbjct: 335 AILLPVVFIFIVGIYRSGIID 355


>gi|159030482|emb|CAO91386.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 349

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 106/341 (31%), Gaps = 15/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +++   L+ L+ ++     +L A+++        + +        +   +I      
Sbjct: 7   FGLVLLVFCLLILWQIRQILLLLLMAILLAQILNLAVTWWQRH-HLKRSHALIITLFGFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I   L +    + + ++L S +  A +        L D      A+           
Sbjct: 66  IGIIGIFLVIIPALVQQFRQLFSLLPQAIERLWGQVHRLEDYLDPSLATVFPDF------ 119

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +        I+ I               LS++ +I        D  +  +    L
Sbjct: 120 ----KTLLAQLQPLINQIAGRGLSIFYGTFGIILSLLLIIALSLMILADPAAYYRCFLRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               + +  + I     + +++   G+    +   L       L G+P   +  ++   +
Sbjct: 176 FPAFYRSRVRSILEHCDRDLKAWLKGIFCHMLIMTLGSCLGLSLIGIPLAFSQSILAGFL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR----PFLVGGPIKL 307
             IP   P+  T +   + +    + +  + L  +    ++         P L    +KL
Sbjct: 236 TFIPNLGPVLSTILPFSIALLEAPWQSWAVLLLYSSIYLLIQYFDHHPPLPILTVRSLKL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               T    +      G LGLF+   L  +  +  KE+++ 
Sbjct: 296 LPACTLLAQLFFASIFGFLGLFLAVPLTLIARIWLKEALIK 336


>gi|154245176|ref|YP_001416134.1| hypothetical protein Xaut_1228 [Xanthobacter autotrophicus Py2]
 gi|154159261|gb|ABS66477.1| protein of unknown function UPF0118 [Xanthobacter autotrophicus
           Py2]
          Length = 338

 Score = 86.2 bits (212), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 46/333 (13%), Positives = 99/333 (29%), Gaps = 25/333 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSV 70
           +      ++  +LY       PV  A+ +    +P+ S    +  +  +    ++ T++V
Sbjct: 5   VGLAAAILVFAALYVADTLIVPVAFAVFVIAVVYPLQSVLEKRLPKLLAVLATLVITLAV 64

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +      +++ F +    + +  ++  +              +  G+WA     + L   
Sbjct: 65  VGGVSSVVVWGFSHVATWVFQNTARFQVLYGQAATWLEGHGFVLAGLWAEHFDVRWLLRV 124

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     L +  +            +                       +   Q+  
Sbjct: 125 FQDISGRLQGLASFLVFTFVYVLLGLLEV----------------------DAAKSQVLR 162

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           LG      +           ++      T+++I  G V+      AG+   +A G I   
Sbjct: 163 LGRTGRAPHLPAALADTAAKLQKYMAVRTLMSIATGAVVWVFTLTAGLELAIAWGAIAFA 222

Query: 251 MAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           M  IP   P           L    +   A  +F    +  F+    L P L G  + + 
Sbjct: 223 MNYIPFIGPFVATLLPALFALAQFESWEMALFVFACLNVIQFLSGSYLEPRLAGKALAVS 282

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                F +       G+ G FIG  ++  +  I
Sbjct: 283 PFLVLFSVFFWAFLWGIAGAFIGVPILIAVLTI 315


>gi|298710168|emb|CBJ31878.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 426

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 78/290 (26%), Gaps = 33/290 (11%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                     +A +  + + +  L  +       +  L +           +   +    
Sbjct: 69  LFNKPVVPRWLAVILAISVVLTALATVGAIVYGSVLSLQANFGKYETEAERMASVIDKRL 128

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                S                         I  +     R   + L        + I L
Sbjct: 129 HKYNYS----------------INEDFMPFAIGSLRERVPRLLKLILSSLEYFFLVAIFL 172

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            +              L           +  I+   IR      T++ +    V+ +  W
Sbjct: 173 VY--------------LLISPVKPIKSSVWGIIDLQIRRYIRLKTMVGMLAATVVTTMLW 218

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI---ELFI 291
           + GV      G+IT ++  +P   P+  T + + L I     +     L   +      +
Sbjct: 219 VLGVQMAYVFGIITFVLNFVPNLGPMIATFLPMPLAIFDPDMSHLNQVLAFVLPTTAHLV 278

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +   + P L G   +L  +     L       G+ G+ +   ++ +  ++
Sbjct: 279 IGNLVEPGLFGESFELSPVVVLLSLAFWGSLWGIPGMILAVPMVVITRIV 328


>gi|148242405|ref|YP_001227562.1| permease [Synechococcus sp. RCC307]
 gi|147850715|emb|CAK28209.1| Predicted permease [Synechococcus sp. RCC307]
          Length = 345

 Score = 86.2 bits (212), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/305 (10%), Positives = 85/305 (27%), Gaps = 17/305 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     +  A+++           + +         V+    ++ L       L   
Sbjct: 26  WELRWVLLVLFGAVVLAVALDVPVQVLMRRTPLHRPQALVVVVGLLVLLGWELGFLLLPE 85

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++  L   +    Q        +  +                        E+    +
Sbjct: 86  LVQQVATLNELLPQLLQRVGAFLSEIRGVGPLG-----------------SSLESSGGLS 128

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +            +  + ++ M +       D       L +     +    +++ 
Sbjct: 129 ALQPLGSQLLGLAGGAANSSIQVLLMALLALLLCLDPQHHINLLIAATPRFYRPQGRRLL 188

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +     +     GMTI AI   L+  +      VP  +  G++  ++  +P   P   T 
Sbjct: 189 QQCRDALGGWLAGMTISAISVFLLTWAGLAWLQVPLALLSGLVCGLLTFVPTIGPTVATL 248

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           +   L +  +   +  + +   I        L P L+   + L         +     +G
Sbjct: 249 LPTALALVVSPELSLKVIVLRLILQNGEAFLLTPLLLSRTVNLLPTVALMAQLSLGALLG 308

Query: 325 LLGLF 329
           L G+ 
Sbjct: 309 LPGVL 313


>gi|262377552|ref|ZP_06070773.1| GAF sensor protein [Acinetobacter lwoffii SH145]
 gi|262307439|gb|EEY88581.1| GAF sensor protein [Acinetobacter lwoffii SH145]
          Length = 655

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 59/192 (30%), Gaps = 3/192 (1%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            A ++G        ++  + + +         +  +L  L                   I
Sbjct: 25  TAMQWGARIFHPLATVGIVFLFVVLILLSRKDLHDRLLKLL-GGNLNVGTDALDDAADRI 83

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYL 269
            +      ++ +  G+ +    WL GVP+ +  G++   M  +P   P+      +++  
Sbjct: 84  GTYLRMQLLVNVTFGIPMAVGLWLIGVPAAIMWGIVAIGMRFLPYVGPMISALFPITLAF 143

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +               +   I +  + P+L G    L  L             G  GL 
Sbjct: 144 AVDPGWNMVLWTIGLILLLELISNNVIEPWLYGESTGLSTLAIILAATFWTTLWGAAGLI 203

Query: 330 IGPVLMALIAVI 341
           +   L A + V+
Sbjct: 204 LSTPLTACLLVL 215


>gi|315286255|gb|EFU45691.1| putative AI-2 transport protein TqsA [Escherichia coli MS 110-3]
          Length = 315

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 38/316 (12%), Positives = 90/316 (28%), Gaps = 22/316 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVGGVRTM 323
             L  F  L+      
Sbjct: 291 STLVVFLSLIFWGWLF 306


>gi|239827804|ref|YP_002950428.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
 gi|239808097|gb|ACS25162.1| sporulation integral membrane protein YtvI [Geobacillus sp. WCH70]
          Length = 343

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/324 (12%), Positives = 100/324 (30%), Gaps = 2/324 (0%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
           FL  +  P++ AL       P   +  +                 + +      FL    
Sbjct: 18  FLLPYSLPLVFALATALLLEPAVKNLQNNYRLKRVHAVTTVFSLFLIIVGFAFYFLIVIL 77

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + ++     K+         V            +S       S   S++ +    L+   
Sbjct: 78  VQQIMTFSQKLPHFLSEATEVFNKFIQTWESYSSSIPKEIITSLENSIETIQRLLLE--F 135

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                +    F  +   + +  +  ++ALF    D   + ++L              I  
Sbjct: 136 ATNSTQSIVHFITLIPGFLIHFLVYLVALFLISLDLPKLKKRLKKYLSERTHQRLAMIVT 195

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + K          ++++    +  +   L  V   V + ++  ++ ++P     S    
Sbjct: 196 QLSKAGIGFIKAQFLLSLITFFLALAGLLLLKVDYAVIMALLIVVVDILPILGTGSVLVP 255

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              + I           +   + + ++ + + P +    + +  L     +  G + +G 
Sbjct: 256 WGIISIANGNSGLGIGLIVLFVIITVIRRIIEPKVFSTNLGISPLAALVSVYLGFQLLGF 315

Query: 326 LGLFIGPVLMALIAVIWKESIMAI 349
           +GLFIGP  + L+  + K  ++  
Sbjct: 316 IGLFIGPAFVILVETMVKAGVIKF 339


>gi|296392986|ref|YP_003657870.1| hypothetical protein Srot_0557 [Segniliparus rotundus DSM 44985]
 gi|296180133|gb|ADG97039.1| protein of unknown function UPF0118 [Segniliparus rotundus DSM
           44985]
          Length = 385

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 83/275 (30%), Gaps = 14/275 (5%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
              P+  S +S++    +    +  V V+ +      F+    +     L  +V+ + + 
Sbjct: 69  FMSPLVDSLVSRRV-PRSLAVGVVLVLVLGVLTGIFAFIIQQAIDGWPALQEQVLQSFEQ 127

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
                         +WA        +        +           I +         ++
Sbjct: 128 LR------------VWAEHAGLHFSADQLEKARDTTVHFVQQHRSDITQGVFSTASALVE 175

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
                   +  L FF  DG SI + L  L         +       K +     G   +A
Sbjct: 176 GVTGFFLALFTLIFFLSDGKSIWEYLTKLVPGESRERVRAAGSSGYKTLIGYVRGTVFVA 235

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCL 281
             + + +G    +  VP  + L  +  + A +P     ++ +   +  L+      A   
Sbjct: 236 AADAIGIGVGLAVLRVPLALPLASLVFLGAFVPVVGSVLAGSVAVLVALVTQGPLVALLT 295

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            +     + +    L+P ++G  +++  L     +
Sbjct: 296 LILLVAVMQLESHVLQPLVLGRAVRIHPLAVILAI 330


>gi|34558124|ref|NP_907939.1| membrane protein- permease [Wolinella succinogenes DSM 1740]
 gi|34483842|emb|CAE10839.1| MEMBRANE PROTEIN-Predicted permease [Wolinella succinogenes]
          Length = 345

 Score = 85.8 bits (211), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 51/358 (14%), Positives = 111/358 (31%), Gaps = 22/358 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P      + +F +   LY  K F   +L A ++   +  +      + + S     ++
Sbjct: 1   MRPIHFFWILFVFSLYWMLYLFKPFLMDMLVAGLLCIATTSLKERIEKRVKLSWLASLLV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  LF+              K          +           +            
Sbjct: 61  VVLLLSLLFVPLFYVAAVLADTLSKIDPDSFRGFVESSKAQMFKWMALFPFAQ------- 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                + L    +    +  +     ++   G   L +    +F+ I LF F+  G +  
Sbjct: 114 -----EKLMENLDKINASAILQHALAWSGALGKKSLSFVTDTVFVTIFLFLFFYYGRAFY 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L          ++   V  V+   F       I +G +        G    +   
Sbjct: 169 DYALRLIPFSRRESH-QLFGEVAGVLGVVFYSSLASVILQGFLFAVMIAFLGYNGFLFGV 227

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVG-- 302
           +      +   G  + +  ++ Y    GN  N+  + L+  I +  + D  ++P L+G  
Sbjct: 228 LYGVASLVPVVGGLLVWLPLASYEYYLGNTGNSLLIALYSMIVIATVADNVIKPLLIGLI 287

Query: 303 ------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                  P+++  L  FF +  G+ T G  G+ +GP + A    + +         +E
Sbjct: 288 NRVILKNPVQINELVIFFAIFAGLTTFGFWGMVLGPTITAFFIALLRLYERGFLHIQE 345


>gi|87302777|ref|ZP_01085588.1| hypothetical protein WH5701_13530 [Synechococcus sp. WH 5701]
 gi|87282660|gb|EAQ74618.1| hypothetical protein WH5701_13530 [Synechococcus sp. WH 5701]
          Length = 357

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 94/291 (32%), Gaps = 1/291 (0%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           + +A+++      +      +   S      I+  +V  + +V  + L    + +  EL+
Sbjct: 29  LFAAVVLAMAICTLVGVVRGRLGCSRPLALTISLGAVALVVVVGGVVLIPPFVEQFAELL 88

Query: 94  SKVVLANQHGIPVPRW-LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +K+  A    I + R  L+++   ++     +                +   G+      
Sbjct: 89  AKLPDAADVLIALARRVLANVSRVLYGRHDGSLEWLQQLWPASGPSPDVLAGGLGGGALR 148

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                       L ++F++           +    L  L    +    +++  +    + 
Sbjct: 149 LLGLASNLGSGTLQLVFVLAVSLMLAVQPTAYRDVLVLLAPSFYRRRLRQVLDLCGAALS 208

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
              +G+ I ++   L+ G    L GV   VA  ++  ++ +IP   P   T   + + + 
Sbjct: 209 DWMVGVAISSVCVALLAGVGLSLLGVKLVVANALLAGLLNVIPNVGPTLSTIFPMSVALL 268

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
              + A  +     +   +    + P ++   ++L    T           
Sbjct: 269 DAPWKALAVLGLYVVVQHLESYVITPSVMHAKLRLLPGLTLTAQFLFTVIF 319


>gi|318041304|ref|ZP_07973260.1| permease [Synechococcus sp. CB0101]
          Length = 351

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 108/310 (34%), Gaps = 5/310 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +     ++ L+ L+     + +A+++      +      +   S     +++ V 
Sbjct: 5   QALGLIATAAAVLLLWSLRHVVIQLFAAVVLAMALCTLVGVVRVRLRCSRPLALLLSLVG 64

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L  V L  +    + + ++L+ ++ +A      + R L D+   M   +     L  
Sbjct: 65  LLLLVAVALAAVVPPFVEQFQQLLLQLPIAADRAGTLLRDLMDVSSRMLYGQQALDWLRQ 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +   L     + +    +  G +     +  + ++IA+        +  +   
Sbjct: 125 NWGSSSSNTEALGQGLQNLLGLAGNLGGGLLQLLFVLAVALMIAVQ-----PTAYREVAV 179

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L    +    +++     + + S   G+ I ++   L+ G    L GV   VA  ++  
Sbjct: 180 LLAPSFYRRRLREVLLQCGEALSSWMGGVLISSVCVALLAGIGLSLLGVKLVVANALLAG 239

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ +IP   P   T   + + +  + + A  +     +   +    + P ++   +KL  
Sbjct: 240 LLNVIPNVGPTLSTVFPMSVALLVSPWKALAVLGLYVLVQNLESYLITPSVMQHQVKLLP 299

Query: 310 LPTFFGLVGG 319
             T       
Sbjct: 300 GLTLAAQFVF 309


>gi|257066664|ref|YP_003152920.1| hypothetical protein Apre_1173 [Anaerococcus prevotii DSM 20548]
 gi|256798544|gb|ACV29199.1| protein of unknown function UPF0118 [Anaerococcus prevotii DSM
           20548]
          Length = 386

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 104/321 (32%), Gaps = 5/321 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+I     P               ++ +    ++ L +  L++   + + ++  
Sbjct: 36  MPIILALVIVGLLAPSIRKIDHILPIKHKAVSYLLGTILLLLLLFFLIWFVQFIVNQVSG 95

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           LV  ++      +       +          +  +  +             L+ N I+  
Sbjct: 96  LVGNIISNWDKIVSSVNTWINDANSQINLMPDYVSNTIRSGLKSLYEWLGSLQKNAINIT 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F   F     +    +I  ++A +    D  ++  +   L           I  +   
Sbjct: 156 FGFTQAFINTSNEIIFFVITFVVAFYIILGDMQNVYDKYHLLIPEKSKNNLSLIRTVFKN 215

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY- 268
              +       +A    +++    +  G    + + +I   + ++P   PI         
Sbjct: 216 STWNYIKSQLKLAFLCTIIMAIFLFFIGQQYFMPIALILGFVDLLPMIGPIIVLLPWSII 275

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LLI  N   +  L +       +  + + P ++G    +  +     L  G++  G++G
Sbjct: 276 ELLIFDNTIKSLGLLIVLTAWTGL-RQVIAPKVIGSSADIHPILLVIALYAGLKLFGVMG 334

Query: 328 LFIGPVLMALIAVIWKESIMA 348
             + PV+   I  I++  I+ 
Sbjct: 335 AILLPVVFIFIVGIYRSGIID 355


>gi|28493386|ref|NP_787547.1| hypothetical protein TWT419 [Tropheryma whipplei str. Twist]
 gi|28476427|gb|AAO44516.1| unknown [Tropheryma whipplei str. Twist]
          Length = 398

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 12/294 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            FA +  AL I     P+ S+ + K   S     V+  +       V L  +      E 
Sbjct: 88  LFAYIGLALFITLAIEPLISALV-KLGISRGVSVVLLLLFFSAFLGVALWLIIPILTSET 146

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L   V      G              + S L         +  +        N +  I
Sbjct: 147 ALLWKTVSSFMTEGN----------YRQFISLLRKAIPDFDFNELLQQGWLWIQNNVTTI 196

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G+  ++    I+ ++I   +F     +I      L       + K     V  
Sbjct: 197 TGSVVNIGIGIVNTVTGIVIVLILTIYFSATLPTIKATGYKLVPASRREFVKDTLEDVLS 256

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI-SFTAVSIY 268
            +     G  ++A   G +    + +      + +  I  I +MIP    I S   +S  
Sbjct: 257 SVGRYTAGQFLLASINGTLTLLIFSILQFKYPILMAFIAFIGSMIPLVGTISSSALISGI 316

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            L     +    + ++  + + +    + P ++   + +P        + G   
Sbjct: 317 TLFSAQGWTVWAVVIYYLVYMNVEAYVISPKIMKKAVSVPGSLVVISALAGGML 370


>gi|325849467|ref|ZP_08170762.1| putative sporulation integral membrane protein YtvI [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480123|gb|EGC83197.1| putative sporulation integral membrane protein YtvI [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 386

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 105/321 (32%), Gaps = 5/321 (1%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
            P++ AL+I     P               ++ +    ++ L +  L++   + + ++  
Sbjct: 36  MPIILALVIVGLLAPSIRKIDHILPIKHKAVSYLLGTILLLLLLFFLVWFVQFIVNQVSG 95

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMW--ASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           LV  ++      +       +          +  +  +             L+ N I+  
Sbjct: 96  LVGNIISNWDKIVSSVNTWINDVNSQINLMPDYVSNTIRSGLKSLYEWLGSLQKNAINIT 155

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F   F     +    +I  ++A +    D  ++  +   L           I  +   
Sbjct: 156 FGFTQAFINTSNEIIFFVITFVVAFYIILGDMQNVYDKYHLLIPEKSKNNLSLIRAVFKN 215

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY- 268
              +       +A    +++    +  G    + + +I   + ++P   PI         
Sbjct: 216 STWNYIKSQLKLAFLCTIIMAIFLFFIGQQYFMPIALILGFVDLLPMIGPIIVLLPWSII 275

Query: 269 -LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            LLI  N   +  L +       +  + + P ++G    +  + +   L  G++  G++G
Sbjct: 276 ELLIFDNTIKSLGLLIVLTAWTGL-RQVIAPKVIGSSADIHPILSVIALYAGLKLFGVMG 334

Query: 328 LFIGPVLMALIAVIWKESIMA 348
             + PV+   I  I++  I+ 
Sbjct: 335 AILLPVVFIFIVGIYRSGIID 355


>gi|224533964|ref|ZP_03674549.1| membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225549773|ref|ZP_03770738.1| membrane protein [Borrelia burgdorferi 118a]
 gi|224512967|gb|EEF83333.1| membrane protein [Borrelia burgdorferi CA-11.2a]
 gi|225369733|gb|EEG99181.1| membrane protein [Borrelia burgdorferi 118a]
          Length = 374

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 109/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +           +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 24  KPWRVESVFYCIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 79

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 80  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------- 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 131 -----------KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIH 179

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 180 VFEMKLDKAFKKPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 239

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V++ +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 240 VWAVLSFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPK 299

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 300 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLISYPFTVIVKVIV 342


>gi|326389134|ref|ZP_08210714.1| hypothetical protein Y88_3510 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206365|gb|EGD57202.1| hypothetical protein Y88_3510 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 414

 Score = 85.8 bits (211), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/325 (12%), Positives = 100/325 (30%), Gaps = 12/325 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L      F P ++AL++     P+           +   +++A + ++ +  + LL +
Sbjct: 52  FVLSLGAVVFQPPMTALVLSIVLSPLADRLT-HIGVPNMLASIVAILVMVAVIGISLLLI 110

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                + +  + +   +       V   L+      W +E+  +      S    S   +
Sbjct: 111 LQPAFVMVDSVPAMARVVAHRFAEVRENLA------WVNEVDRQISRVTGSFSNASPRPV 164

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  I R A     + L   ++I+                 + L     +       
Sbjct: 165 TLAEPTVIERLAIATPSVVLQAMVTILMTFF---MIASRMRMRRRLLRERANYSSSVRMA 221

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++ R V   + S  L +  I +  GL++       G+ + +  G +   +  +P   P++
Sbjct: 222 RVMRDVQDRVASYILTVAQINLALGLIVFIGASWWGLAAPIMWGGLAFALNFLPYMGPLT 281

Query: 262 FTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
              +     L     +       L       I    + P ++G    L  +         
Sbjct: 282 MFFLLGLVGLGTANTVVLGLVPALAFLALHAIEANLVTPSILGARFTLNPVSILISFSFF 341

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKE 344
               G+LG  +   ++  ++ +   
Sbjct: 342 TWVWGVLGALLSMPILLTLSSLIDH 366


>gi|295396780|ref|ZP_06806915.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294970364|gb|EFG46304.1| brp/Blh family beta-carotene 15,15'-monooxygenase [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 405

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 107/324 (33%), Gaps = 24/324 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKG---FFAPVLSALIIGFTSWPIYSSFISKKEESS 59
              + P+ ++  + +  +   + F++G     APV  AL +     P+ +  ISK+   +
Sbjct: 7   RPAMLPRFLIIVLGLAGLAFGIQFIQGLQTIVAPVFLALNLVVVVHPLQAYLISKRV-PA 65

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A I  V V+ L +V      +     +  L S      Q    V R+ +        
Sbjct: 66  IVAASITVVIVLALLVVFFALNAWAIAELVIVLPSYSHKLAQLYGEVIRFTTSW---GLT 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            E+    LS      +        + +  I    +   M      +  +     L    +
Sbjct: 123 PEVIQNQLSAFDFSSMTDAVLQVLSNVSAILALLTTVVMTVFFVIMDSLQFPARLREVGK 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
                S  + S                  + +R  ++  TI  +   +    A W+ GVP
Sbjct: 183 VAPQFSFAMRSF----------------GQGVRRYWVVATIFGLIVAVFDVIALWIIGVP 226

Query: 240 SHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
             +  GV+      IP    I      ++  L++G  ++A  + +      F++   ++P
Sbjct: 227 LALVWGVLAFTTNYIPNVGLIIGLIPPALMALLEGGWWDAFWVVVAYLTLNFVIQAIIQP 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRT 322
              G  + +    +F  L+     
Sbjct: 287 KFTGESVGVTPFISFLSLLFWYWV 310


>gi|229102560|ref|ZP_04233265.1| UPF0118 membrane protein [Bacillus cereus Rock3-28]
 gi|228680882|gb|EEL35054.1| UPF0118 membrane protein [Bacillus cereus Rock3-28]
          Length = 339

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 114/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  QH                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQHPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKDRIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVLYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|220907294|ref|YP_002482605.1| hypothetical protein Cyan7425_1877 [Cyanothece sp. PCC 7425]
 gi|219863905|gb|ACL44244.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 355

 Score = 85.8 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 109/337 (32%), Gaps = 13/337 (3%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +++I   + F +      + A ++ F          ++     ++  ++     +
Sbjct: 16  IAALNLWLIGKGVQFFQPLVTIFILAALLAFLLNHPVDWLQTR-GWKRSYAVLLTCTLAL 74

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +   L L    + E+++L + + +           +              + L    
Sbjct: 75  TLLLGLSLTLIPLVVAELQDLTAALPVLIASSNERLAGVQRWLIYRDLPINLNQWLDQLT 134

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +    +   L       +         + L   L+         +   DG  I   L   
Sbjct: 135 ATLPDTLNRLSDQLWQIVLETLDSVAEVLLTLVLTF--------YLLLDGEKIWGGLTQ- 185

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               F    K + R + + ++S FLG   +A   G V+     L G+P  + LG+   + 
Sbjct: 186 --QAFGGRLKPLGRSLQQNLQSYFLGQFTLAALMGTVMILVLLLLGIPFALLLGLGIGLF 243

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P    +    +    +   N      + +   I   I+D+ + P L+G  + L  + 
Sbjct: 244 TLLPF-GDVFGMTLVTLAIAVQNPEQGLKVAIAAVIVDQIIDQLVVPRLLGSLVGLRPVW 302

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               L+ G +  GL G+ +   L           +  
Sbjct: 303 VLAALLVGAKIAGLTGIILAVPLAGFCRSALDGFVEG 339


>gi|45358507|ref|NP_988064.1| hypothetical protein MMP0944 [Methanococcus maripaludis S2]
 gi|44921265|emb|CAF30500.1| hypothetical protein MMP0944 [Methanococcus maripaludis S2]
          Length = 336

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 52/337 (15%), Positives = 122/337 (36%), Gaps = 21/337 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +MR  ++   L  +     F   +  A    + + P +S+         T  A++  +
Sbjct: 7   RFLMRIFVLISFLSVMIIAFPFLDTIAFACAFAYMTEPFFSALKKYTG--RTLGAILCIL 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +    I+ +  +       +  L               ++++ I     A E  +  LS
Sbjct: 65  MITVPAIILVFLILTDIFEFLNSL-----DYAGFVDYTVQFINYIGLQNIAKEDLSSILS 119

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +   +                       +  +  +   ++F +DG+     +
Sbjct: 120 EIWNFLKPTVNKMAGQIYGLPL------------LFIKGLVTVFLTYYFLKDGYRFKDAV 167

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 ++    +   R + +  ++ F+   + A   GL+  + +W  G+P+ V LG ++
Sbjct: 168 MPHVPEVYHVQTELFIRKLHEAYKNLFVVNALTAFTVGLISIAGFWAIGLPNPVTLGALS 227

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I+ ++P     +    +S+Y +  G    A  LF +G + L +  D  +RP LV     
Sbjct: 228 GILTLLPIVGGWTIYMPLSVYYIAVGMYSKAILLFGFGVLFLSLAPDFVIRPRLVNHESS 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +         + G   +G+ G  +GP++M     I++
Sbjct: 288 IHPAFALVAFLMGPLALGITGFALGPLIMGTFDAIFR 324


>gi|223039328|ref|ZP_03609617.1| acid membrane antigen A [Campylobacter rectus RM3267]
 gi|222879389|gb|EEF14481.1| acid membrane antigen A [Campylobacter rectus RM3267]
          Length = 346

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 121/356 (33%), Gaps = 21/356 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N +       +  + +  Y  K F   +  A ++   +  I   F+   +   T  A +
Sbjct: 1   MNNRVFFGIFALCALALVAYLFKPFLLNIFIAALLAVATSNINVKFLQLTKGKKTLSAAL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T+ +  LFI P L+             +  V           +           +L   
Sbjct: 61  TTIVLFSLFIAPFLYAVIEIARNAASFNTSYVTNTLDYFQSGNF-----------QLPEP 109

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  +K +            I    +  G   +++ + ++F+++  FF    G  ++
Sbjct: 110 IKFMEPKIKEIIADIDVKAISANIIANLAGIGKSSVNFLIDMVFILVFFFFAILYGSELA 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L S          + I   V  V+      + + AI +G +        G    +   
Sbjct: 170 GYLKSALPMKESES-EFILSEVVNVMSVVLYSIVLNAILQGCLFAIIMISYGYNGFLMGI 228

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRP------ 298
           +      +   G  +++  +S+Y    GN   A  + ++  + + IV D  L+P      
Sbjct: 229 IFAFTSLIPVVGGLLAWGPISLYEFANGNTAAAVVIAVYTVVVISIVADTFLKPIVIKFI 288

Query: 299 --FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              LV  P K+  L  FF ++ G+ T G  GL +GP ++       K   +  + +
Sbjct: 289 NDRLVKIPAKINELLIFFSMIAGISTFGFWGLILGPAIVTFFISTIKLYTLLKERS 344


>gi|307721655|ref|YP_003892795.1| hypothetical protein Saut_1739 [Sulfurimonas autotrophica DSM
           16294]
 gi|306979748|gb|ADN09783.1| protein of unknown function UPF0118 [Sulfurimonas autotrophica DSM
           16294]
          Length = 349

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 58/353 (16%), Positives = 122/353 (34%), Gaps = 23/353 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q  +  +    +       + F   +  A ++  ++  I + F      S    A ++++
Sbjct: 4   QYFIAILFATSLYWMYLLYEPFLMVMTIAALLAISTASINNYFEQ-LFSSRFVAAFLSSL 62

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  LF  PL +      +++  L    +   +           +      +      L 
Sbjct: 63  LLAILFFAPLGYFLATLTIKLNHLEPNSLKNIE-----------LYINGLITNPPEFLLF 111

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               L    +     +        A++ G     +  +   +I+  FF   +G +I + L
Sbjct: 112 LKPYLVDSLKGIDINSLTANALHVAAKVGTFSAGFVKNAFLVIVFYFFAMYNGSTIVEFL 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             + +         ++R +  V+   F  +   A+ EG + G A    G    +   +  
Sbjct: 172 KRVVQMSVEDSTL-LARELSAVMSVVFYSIIATAMLEGALFGIAVSFMGYNGLLFGIMYG 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGG---- 303
               +   G  + +    IY L  G+  NA  + L+  I + ++ D  ++P ++      
Sbjct: 231 FASLLPVVGGILMWLPFMIYELSAGHNANAVFIALYSIIVISVIADTFIKPLIIKEINKR 290

Query: 304 -----PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                  KL  L  FF ++ G+ T G  G+ +GP + A    I K      KE
Sbjct: 291 LLKESDAKLNELVIFFSIIAGLATFGFWGMILGPAITAFFLAILKLFEARTKE 343


>gi|307544324|ref|YP_003896803.1| hypothetical protein HELO_1734 [Halomonas elongata DSM 2581]
 gi|307216348|emb|CBV41618.1| conserved hypothetical protein [Halomonas elongata DSM 2581]
          Length = 371

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 47/328 (14%), Positives = 101/328 (30%), Gaps = 24/328 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II+  +    G   P+L +L I             +          +  +    +    
Sbjct: 24  VIIIAGMRVGAGLLVPLLLSLFIAVVCTAPVQWLH-RLGLGQRLAVWLTLI----VIGGF 78

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  L    +      V  +    +        + +    +  +               LS
Sbjct: 79  ISLLGILLVNSFGTFVEALPGIEEKLYQYYLGILEGLANLGLA----------IDTGWLS 128

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           + F      D+IP    + G + +   +  + ++  LF        +S+ L +    L  
Sbjct: 129 DLFDADKFGDWIPALLGQVGNLMMQSVVVALLVMFLLFETLNFRDKLSRALANPAPSLRR 188

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                  +     ++      T++++  G ++  A  L GV   +   V+   +  IP  
Sbjct: 189 ------FQEFSMTLKRYLAVKTLVSLATGALIWVACQLVGVEFPLLWAVLAFALNYIPNI 242

Query: 258 APISFTAVSIYLL---IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                    + LL     G +F A  L        F++   + P ++G  + L     F 
Sbjct: 243 GSAIAAVPPVLLLLVSPDGGLFKALILSGAYLGVNFVLGNLIEPRVMGRALGLSTFVAFL 302

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            LV      G++G+ +  VL   + +  
Sbjct: 303 SLVVWGWVFGVVGMLLSVVLTMTLKIAL 330


>gi|227889120|ref|ZP_04006925.1| permease [Lactobacillus johnsonii ATCC 33200]
 gi|227850349|gb|EEJ60435.1| permease [Lactobacillus johnsonii ATCC 33200]
          Length = 349

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 48/341 (14%), Positives = 105/341 (30%), Gaps = 19/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE-ESSTFL 62
                  + R + + +I++ LY  +     +L   I  +    +      K     +  +
Sbjct: 7   KFKENTTVHRLVALCLIILVLYAARSMMNTILLTFIFTYLIVHLIRFTQKKIPSLPAQVI 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+A + V+ L    +       + ++ ++   ++   Q                   ++
Sbjct: 67  VVLAYLLVIALIYFAITIYVPILIKQIIKMSHSLIKFYQS-----------------DDM 109

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +     T    +G+  +    + FG + + + +S+I              
Sbjct: 110 NWVSRYLSHYISNSEITTQAKHGVTILVHALTNFGTLTIAFFMSLIMSFFYTIELNSMIE 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                L S                              IA+    +      +  +P  +
Sbjct: 170 FSHTFLQSRHLSWLFEDVAYFGNKFVNTFGVVLEAQFFIALCNTAMTIICLIIMRMPQII 229

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           ALG++  I+++IP    I     +S+     G +     +F+   I   I    L P  +
Sbjct: 230 ALGLMVFILSLIPVAGVIISLIPLSLVAYSVGGLRYVIYIFIVIMIIHAIEAYILNPKFM 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+ G   +G  GL +G  +   +  I 
Sbjct: 290 ASKTELPIFYTFVVLLVGEHFLGTWGLIVGVPIFTFLLDIL 330


>gi|260461377|ref|ZP_05809625.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
 gi|259032914|gb|EEW34177.1| protein of unknown function UPF0118 [Mesorhizobium opportunistum
           WSM2075]
          Length = 364

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 111/330 (33%), Gaps = 14/330 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +  IL + +       P++ A+++     P  S    +        A++    V+ + 
Sbjct: 30  LFLLAILAASFAASAIVLPLVLAVVLKLLLQPAVSLLE-RFFVPRALGAILPIALVVGIL 88

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  +  L        ++L   V     H + +   +  + G +  +E          ++ 
Sbjct: 89  VGLVAALSEPAATWAQKLPQGVPRLEAHLMVLSGPVHKLQGALEVAEEVANAPPQGHTMV 148

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +                A             ++  ++ L+F    G +  ++L  +   
Sbjct: 149 AVRSD----------LGLAGTLFAGTKAVLDGLLTTVLVLYFLLLSGDTFLRRLVEILPD 198

Query: 195 LFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I + +   I    L +T++    GL   +A +L G+   +  G    ++  
Sbjct: 199 FGDKRQAVEIFQRIESDISIYLLTITLMNALVGLATAAAMYLCGIGDVLLWGTTAFLLNF 258

Query: 254 IPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P   P+    + +   LL   +++ A        +   I  +T+ P L+     L  + 
Sbjct: 259 VPFLGPLLGVGIFLLVGLLGFDSLWWALLPPGLYFLIHLIEGETVTPLLLARRFTLNPVL 318

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L+      G  G  +   L+A++ +I
Sbjct: 319 VVLSLIFWFWMWGAPGALLAFPLLAMLKII 348


>gi|116074653|ref|ZP_01471914.1| hypothetical protein RS9916_29004 [Synechococcus sp. RS9916]
 gi|116067875|gb|EAU73628.1| hypothetical protein RS9916_29004 [Synechococcus sp. RS9916]
          Length = 362

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 99/302 (32%), Gaps = 4/302 (1%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     + +A+++      +  S   +      +  +I  + ++ +  +    L   
Sbjct: 20  WSLRDVLIHLFAAIVLAMAICTLVGSLRERWPIPRGWALLICLLGLVLVVGIGASILVPP 79

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP--QSLKILSETFLK 142
            + +  +L+ ++  A      +     +   G        ++ S     +   L ++   
Sbjct: 80  FVSQFHQLLLQLPAAANELKQLAIATINNISGRVYGLEGARNWSAQFLSNGTALPDSATL 139

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
            +G+    +             + ++F+I           +  +    L    +    + 
Sbjct: 140 ASGLGGGLQQLLGLAGNLGSGLVQLLFVIAVTLMVAVQPQAYREVAIQLMPSFYRRRARA 199

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I     + + S  +G+ I ++  G++ G    L GV   VA  ++  ++ +IP   P   
Sbjct: 200 ILLQCGEALSSWMVGLLISSLCVGVLAGIGLSLLGVKLVVANALLAGLLNVIPNVGPTMS 259

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           T   + + +    + +  +     + +  +    + P ++   +KL    T         
Sbjct: 260 TIFPMAVALLDAPWKSLAVLGL-YVVIQNLESYVITPSVMHHQVKLLPGLTLTAQFVFTV 318

Query: 322 TM 323
             
Sbjct: 319 VF 320


>gi|16803459|ref|NP_464944.1| hypothetical protein lmo1419 [Listeria monocytogenes EGD-e]
 gi|47095370|ref|ZP_00232980.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|224499726|ref|ZP_03668075.1| hypothetical protein LmonF1_08559 [Listeria monocytogenes Finland
           1988]
 gi|224501639|ref|ZP_03669946.1| hypothetical protein LmonFR_03832 [Listeria monocytogenes FSL
           R2-561]
 gi|254827707|ref|ZP_05232394.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|254898415|ref|ZP_05258339.1| hypothetical protein LmonJ_01330 [Listeria monocytogenes J0161]
 gi|254912094|ref|ZP_05262106.1| conserved hypothetical protein [Listeria monocytogenes J2818]
 gi|254936421|ref|ZP_05268118.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284801805|ref|YP_003413670.1| hypothetical protein LM5578_1560 [Listeria monocytogenes 08-5578]
 gi|284994947|ref|YP_003416715.1| hypothetical protein LM5923_1512 [Listeria monocytogenes 08-5923]
 gi|16410848|emb|CAC99497.1| lmo1419 [Listeria monocytogenes EGD-e]
 gi|47016191|gb|EAL07114.1| membrane protein, putative [Listeria monocytogenes str. 1/2a F6854]
 gi|258600086|gb|EEW13411.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
 gi|258609013|gb|EEW21621.1| conserved hypothetical protein [Listeria monocytogenes F6900]
 gi|284057367|gb|ADB68308.1| hypothetical protein LM5578_1560 [Listeria monocytogenes 08-5578]
 gi|284060414|gb|ADB71353.1| hypothetical protein LM5923_1512 [Listeria monocytogenes 08-5923]
 gi|293590062|gb|EFF98396.1| conserved hypothetical protein [Listeria monocytogenes J2818]
          Length = 345

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 102/342 (29%), Gaps = 25/342 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + I   +        ++ +LV                               
Sbjct: 67  LLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT---------------------D 105

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +      +  L+  F      +        +        +++   ++   FF      +
Sbjct: 106 SNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHL 165

Query: 185 SQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
               +          ++++                   IIA+   ++   A W+ G P  
Sbjct: 166 VSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFPQL 225

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L ++  ++ +IP    I     ++I     G +     + +   I   +    L P L
Sbjct: 226 MTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKL 285

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +     LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 286 MSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|81300150|ref|YP_400358.1| hypothetical protein Synpcc7942_1341 [Synechococcus elongatus PCC
           7942]
 gi|81169031|gb|ABB57371.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
          Length = 361

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 106/304 (34%), Gaps = 13/304 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           VL A ++ F         + +     +   +      + L I    +L    ++E+  L 
Sbjct: 42  VLVAALMAFILDLPVRWLVQR-GLPRSLALLTVLGGGIALIIALATWLLPPLLVEVNVLT 100

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +                          W        +          T+ ++ +    
Sbjct: 101 RALPHWYDTAKLEVLQFEAWTLSFNLPLDWVSLFQRVVTE--------VTDLVETLSTQL 152

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               + F D  L+ +  ++   F    G  +S  +      ++      ++  + +  ++
Sbjct: 153 LSLTLEFFDGALNFLITVVLTLFLLMYGEEVSGTVLQRLPAIWRDR---LAIGLRQKFQA 209

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  IIA    ++L  A  L  +P  + LG++  + ++IP    +   ++   LL   
Sbjct: 210 FLGGELIIASLYSVLLLVALSLLKIPFALLLGLVLGLGSLIPFLDILLVISLCGVLL-FQ 268

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +   A  LF+   +   I D  + P L+G  I L  +     ++ G++  G+LGLF+   
Sbjct: 269 DPAIAAKLFITVFLLGQINDNLIEPRLMGQIIGLNPVWILLSVLLGLKIFGILGLFVAVP 328

Query: 334 LMAL 337
           L +L
Sbjct: 329 LASL 332


>gi|301021869|ref|ZP_07185831.1| conserved hypothetical protein [Escherichia coli MS 196-1]
 gi|299881421|gb|EFI89632.1| conserved hypothetical protein [Escherichia coli MS 196-1]
          Length = 281

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 88/271 (32%), Gaps = 17/271 (6%)

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M + ++ L  L         E +S +   N+        L ++   +       + L   
Sbjct: 1   MVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQRM 60

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S K+++ T     G+           M  +     +  +   + F   +       L  
Sbjct: 61  DSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLHR 120

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                             K +       T++++  G+++     L GV   +   V+  +
Sbjct: 121 AL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAFL 164

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +P     IS     I +L+   ++    +     +   ++   L P ++G  + +  
Sbjct: 165 LNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMST 224

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +  F  L+     +G +G+ +   L ++  +
Sbjct: 225 MVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 255


>gi|237749317|ref|ZP_04579797.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
 gi|229380679|gb|EEO30770.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13]
          Length = 375

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 68/343 (19%), Positives = 138/343 (40%), Gaps = 13/343 (3%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
               I   + +  + +       F + +  AL +     PI+   + KK +     A++ 
Sbjct: 24  IRSFIQLGITILGVFLCYLMTVPFLSSLAWALALAVLFMPIHRRIL-KKLKKKNIAAMLT 82

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +   + + ++P++++    +LE+    + ++     G      L  +P    A      H
Sbjct: 83  SALAIIIVVIPVMWMVIRVVLEVDRGATLIMDRVSSG-EWQDNLESMPFVGRAVYWLENH 141

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           L+  Q+           N   ++    + F        + I+     LF+F RD   I +
Sbjct: 142 LNIHQA---------VNNLTSWLTAQVTLFLRSSFIQIIVIVLTFYLLFYFLRDRNEILR 192

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +      L       + ++V   IR+T  G   ++  +G + G  +W+ G+P+ +  G 
Sbjct: 193 TVRRFSP-LCGRETNGLFKVVNDTIRATVFGTLAVSAVKGFLSGFMFWVLGLPAPLLWGS 251

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           I  I+++IP     I +   ++YL + G    A  L +WG +   +V+  L P LV   +
Sbjct: 252 IMGILSIIPLLGSYIIWIPAAVYLALDGYWAQALVLVIWGIVVGGVVNNVLYPILVSKKL 311

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           KL  +  F  L GG+   G  G+ +GP+ +   A +     + 
Sbjct: 312 KLHTIVAFIALAGGILVYGASGVILGPITLTASAFLLHLWRLK 354


>gi|229121503|ref|ZP_04250730.1| hypothetical protein bcere0016_18070 [Bacillus cereus 95/8201]
 gi|228661967|gb|EEL17580.1| hypothetical protein bcere0016_18070 [Bacillus cereus 95/8201]
          Length = 339

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 113/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|78777874|ref|YP_394189.1| hypothetical protein Suden_1677 [Sulfurimonas denitrificans DSM
           1251]
 gi|78498414|gb|ABB44954.1| Protein of unknown function UPF0118 [Sulfurimonas denitrificans DSM
           1251]
          Length = 330

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/334 (15%), Positives = 113/334 (33%), Gaps = 23/334 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
             F   ++ A ++  ++  I++ F    +         + +  +  F+    FL    + 
Sbjct: 6   APFLLGMIIAALLAISTSNIHNFFEKILKSKFLAALSSSILLAVLFFVPLGYFLVTLSIK 65

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
                            P      +I    +        L     ++   E     +   
Sbjct: 66  ------------LNSVDPEVFKNIEITIRDFLVNPPEYLLFLKPYMQTTIEDISINSIAS 113

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           +I  F    G +   Y  +   +I+  FF    G  I   L  + +         +++ +
Sbjct: 114 YIFSFTGDIGSLSAGYLKNSFLVIVFYFFAQYSGGFIIDLLKRVVQMSADEATL-LAKEL 172

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
             V+   F  + + A+ +G++ G A    G    +   +      +   G  + +   ++
Sbjct: 173 SSVMSVVFYSIIVNAMLQGILFGLAISYMGYNGLLFGIMYGFASLIPVVGGVLMWLPFTL 232

Query: 268 YLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG---------GPIKLPFLPTFFGLV 317
           Y    G+  NA  + L+  + + IV D  ++P ++             K+  L  FF ++
Sbjct: 233 YEFSMGDSSNAIFIALYTVVVISIVADTFIKPLIIKELNLRLLKEDDAKMNELIIFFAII 292

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G+ T G  G+ +GP + A    I K      KE
Sbjct: 293 AGLTTFGFWGMILGPAITAFFLTILKLFEARTKE 326


>gi|187250591|ref|YP_001875073.1| putative permease [Elusimicrobium minutum Pei191]
 gi|186970751|gb|ACC97736.1| putative permease [Elusimicrobium minutum Pei191]
          Length = 347

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 88/336 (26%), Gaps = 29/336 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    +   L F K    P + A++I     P+      K +  +    ++      
Sbjct: 22  VAILASVALAFCLIFTKSVSMPFVIAVLIYTVLAPMIRFLTKKTKMPN----LLILSLTF 77

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
                    +  +    +   +S      +  I +  W +               L   +
Sbjct: 78  LAVCGLTALVAIFIYNSIGSFISGADAYREKLIDIANWATFTASKYNFHIDNAFILDALR 137

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           +L + +      + +  +        +I   +                            
Sbjct: 138 NLPVFTFVKSLGSVLLSLSISTFLVIIILFFFFAGSRAA--------------------- 176

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     K  + +   I         +++  G+V+        V      G IT  +
Sbjct: 177 --EQKTTKESKTMQEIQSRISFYITVKVAVSLITGIVVWIILGAFNVELAFMFGFITFFL 234

Query: 252 AMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             IP    I      V +  L  G       +        F++   + P ++G  + +  
Sbjct: 235 NFIPNVGSIVAVLLPVPVIFLQYGLGSRFIIIMSLAITAQFVLGNIIEPKVMGSAVDMHP 294

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +     LV      G+ G F+   L A I V+    
Sbjct: 295 VTVICALVVWSLIWGIAGAFLAVPLTAAIQVVMARF 330


>gi|325189082|emb|CCA23609.1| transmembrane protein putative [Albugo laibachii Nc14]
          Length = 433

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/366 (11%), Positives = 102/366 (27%), Gaps = 45/366 (12%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--------- 51
           M+   L  +G +    +      L + +    P+  A+ + +   P+             
Sbjct: 72  MKRMALELKGAVLATGLAACCYLLSWFQTVLLPLFLAIFLMYLVDPLVEVIDVSPRYFLC 131

Query: 52  --ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
               +   +       +        +V + F F                     I V   
Sbjct: 132 ICTQRGRLARRTSRGCSRAFASLCAVVTVCFFFALLG----------------YITVLSV 175

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            +                +   S ++     + T   D + R A  F    +D    +  
Sbjct: 176 YALDMTPYQDGYNHLVAKAERVSGRVGVPLNITTTLHDNVERLARIFLTETMDILSFVFV 235

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            II L +F       S                 +   + + I+        +++   L++
Sbjct: 236 TIIYLTYFLCTRTRASDA-------------GGVWSKIDRDIQRFVTLKCFLSLFVALLV 282

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-----GNIFNATCLFLW 284
              Y    V   +  G++T I+  IP    +  + + + +++       N        L 
Sbjct: 283 TVVYVWLNVGLAILWGILTFILNWIPNVGAMVASLIPVLIIVITPSSVMNTMEKFLAVLL 342

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                  V   + P + G  +++  +     L       G++G+ +   L A   ++   
Sbjct: 343 PMCLHAFVGNFIEPRVFGKKLEMDPVIVILSLSTWGLLWGVVGMILSVPLTAAFKIMLSH 402

Query: 345 SIMAIK 350
             +  +
Sbjct: 403 LKLWPE 408


>gi|221369354|ref|YP_002520450.1| hypothetical protein RSKD131_3517 [Rhodobacter sphaeroides KD131]
 gi|221162406|gb|ACM03377.1| Hypothetical Protein RSKD131_3517 [Rhodobacter sphaeroides KD131]
          Length = 385

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 111/339 (32%), Gaps = 21/339 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
               G +  +   ++L  L   +     +  ++I+   +    +     +         +
Sbjct: 19  RVQTGALVIIAFAVVLALLVQAQFILISLAVSVILFSLTSDAIALVARVRFGPVKIPNWL 78

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A+   + L  + LL L    + ++  ++   +  ++        +    G          
Sbjct: 79  ASSLALLLLAIVLLSLAAVIVSQVNTVLLTALSYSEQAPAAVAAIFSWLG---------- 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                   K   E  L +     I  +             + + +I+ + F + +     
Sbjct: 129 --------KDAEEAVLSSLRAVEISGYLRTLAAQAGTLMQATVLVILFVGFLFAERVWFP 180

Query: 186 QQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +L +L  +       ++I   +   +    L  T+++   GL++       G+     L
Sbjct: 181 VKLLNLFGNPDRARRVEEIVSSIMHRVNRYLLVKTLVSAITGLLVWGVAMAFGLDLAAPL 240

Query: 245 GVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G++T I+  IP    I      V +  +   ++  A  +     +  FI    L P L+G
Sbjct: 241 GMLTFILNFIPSLGSIVATLLIVLVTFVQTVDVSTALSVLALVGVIQFICGNILDPMLMG 300

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             ++L        L       G+ G+F+   +M  + ++
Sbjct: 301 RALQLSSFGIIISLAFWGAIWGIPGMFLSVPIMVGLMIV 339


>gi|218903075|ref|YP_002450909.1| hypothetical protein BCAH820_1958 [Bacillus cereus AH820]
 gi|218539607|gb|ACK92005.1| putative membrane protein [Bacillus cereus AH820]
          Length = 337

 Score = 85.4 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 113/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFLSKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|20091458|ref|NP_617533.1| hypothetical protein MA2635 [Methanosarcina acetivorans C2A]
 gi|19916603|gb|AAM06013.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 357

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/336 (12%), Positives = 106/336 (31%), Gaps = 25/336 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + ++ + +  +     P+  +        P+    + K          ++  
Sbjct: 16  KILLYSTAVVLLTLGMKAISSILIPIFFSFFAFLIFSPLVRWLMKKGVPGK-----VSVF 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LFI             + +L + +   +     +   +S                 
Sbjct: 71  LVILLFIFVFFGTAVLFANSLIQLSNMIPSYDTQLQSILGTVSTHFP------------- 117

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +   + T +  +   F  R +       L+   +++ + I   F   D      ++
Sbjct: 118 ----VSGDTLTSVLRSIATFAFRVSGNIVTGALNAGSTVVLIFIVTTFLLLDSAGAPVKV 173

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               E      +      + K + +  L  T   +  G+ +   + + G+   V  G++ 
Sbjct: 174 QK--EVEDQPVYLSRFTELSKTVINFMLLRTETNLIGGIGVAILFLIGGIDFAVLWGLLF 231

Query: 249 AIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP     ++     +  L K     A  + +   I   +++  L P + G  +KL
Sbjct: 232 FLFGYIPYLGFYLATIPPMLLGLFKYGPVGALGVLVGVTIINALIENVLFPSIAGRGLKL 291

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                F  L+     +G  G  I   L  ++ ++ +
Sbjct: 292 STTIVFLSLIYWSYVLGAAGALIAVPLTIVVKIVLE 327


>gi|152975277|ref|YP_001374794.1| hypothetical protein Bcer98_1483 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152024029|gb|ABS21799.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 333

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 114/342 (33%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R+++  I+   LY LK     +L   I+ F          +K + +   +
Sbjct: 5   KNFFQSRGFQRFIVFVILAFLLYGLKSMINLILITFILTFLMDRFQRFISNKLKINRKVV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                  ++   +  L        +++ +L+ +  L  QH                    
Sbjct: 65  IACLYSVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQHPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYVLSTINQMEVSKYIEQGVDVIYQSVANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +       S+   +          +IAI   ++   A    G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFSQRFARSFGKVIEAQFLIAIVNCILTVIALVFLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L ++  ++ +IP    I     + I     G I     + +   +   +    L P  +
Sbjct: 227 VLAIMIFLLGLIPVAGVIISLFPLCIIAYNIGGIMYVVYILIVITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                LP   TF  L+     +G+ GL IG  +   +  +++
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVFE 328


>gi|327479058|gb|AEA82368.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 356

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 67/277 (24%), Gaps = 16/277 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           +++ G     +                    V ++         +    + +   L   +
Sbjct: 47  SILFGVLIHGVSCWLSRHTPLPYKASMGAFFVVLLLGLGGGGWLVAPSIVEQADALSDSL 106

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             A +        L      +  S+     L                          ++ 
Sbjct: 107 PEAVERLRERAEQLPWANELLQQSDRLADSLPE----------------GSSAFSVVTKV 150

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                    S +           D       L  L    +     ++       +R+  L
Sbjct: 151 MGSVAGALSSFVIAFAIGICLAIDPRVYRSGLLKLVPQGYRPRAAEVLDESGATLRAWLL 210

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
              +  +  G++     WL G+   + LG+I  +++ IP   P+     ++ L       
Sbjct: 211 AKLLEMLLIGVLTTLGLWLLGIELALVLGLIAGLLSFIPNIGPVLAVIPALLLASLEGGR 270

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
               +         +      PF+    + +P   T 
Sbjct: 271 TVLYVAGLYLFVQALESYVFTPFMQQRIVSIPPALTI 307


>gi|116872852|ref|YP_849633.1| integral membrane protein [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741730|emb|CAK20854.1| conserved integral membrane protein [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 345

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/340 (13%), Positives = 101/340 (29%), Gaps = 19/340 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           + L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + 
Sbjct: 6   SFLQNRSVRRVGVFLLIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           ++  V +  + +   +        ++ +LV               + +        ++  
Sbjct: 66  LLLYVVIAAVIVFVFVKYIPVLADQINQLVK--------------FGNHFLTTDSNNDFI 111

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +       I+  T    + I           M      +  +F  +           
Sbjct: 112 NYIIGLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHLISFTNQ 171

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            S    +          K                  IIA+   ++   A W+ G P  + 
Sbjct: 172 FSTSKIAFIY----EEVKFFGSKFVATFGKVIEAQFIIALVNAVLTTIALWILGFPQLMT 227

Query: 244 LGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           L ++  ++ +IP    I     ++I     G +     + +   I   +    L P L+ 
Sbjct: 228 LSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGLEYIFYILIVVIIIHALESYVLNPKLMS 287

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 288 AKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|254511550|ref|ZP_05123617.1| transporter, permease [Rhodobacteraceae bacterium KLH11]
 gi|221535261|gb|EEE38249.1| transporter, permease [Rhodobacteraceae bacterium KLH11]
          Length = 362

 Score = 85.0 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 98/334 (29%), Gaps = 25/334 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++  ++++ LY    F  P+  AL++      +    I+              ++ + +
Sbjct: 23  VIVATLVVLGLYAGAAFLIPLTMALLVNVLIMALSDRVIALTRAPIWLAN----LAGVTV 78

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L  + Y    +  +    +             ++ + G    S +    +S   S 
Sbjct: 79  VLAGLFMIMYILGSQATQFARSINTYESQFDGAVNRITGLVGNDVTSFIRDNLISIDMSY 138

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                              A                + + + F   +  +   ++     
Sbjct: 139 ------------------VARLLLGSATSLLNQFFLISLYVAFLMAERLAFRHKIQLAAG 180

Query: 194 HL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +    A    +   +   ++      T I++    +  S + + G+       V+T  + 
Sbjct: 181 NPQLGADLASVLDAISSSLQRYVGVKTFISLITATISYSVFRVLGLEYAETWAVLTFALN 240

Query: 253 MIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP    I        I L+    I     + L      F++   L P ++G  + +   
Sbjct: 241 FIPSIGSIIAVIFPAMIALVQFDTIGPFLVIVLGCGTLQFVIGNFLDPAMLGRSLNMSTF 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                L       GL+G F+   L   I +I+  
Sbjct: 301 LVILALTFWTTVWGLIGAFLSVPLTVCILIIFSH 334


>gi|315638162|ref|ZP_07893344.1| acid membrane antigen A family protein [Campylobacter upsaliensis
           JV21]
 gi|315481698|gb|EFU72320.1| acid membrane antigen A family protein [Campylobacter upsaliensis
           JV21]
          Length = 347

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 57/350 (16%), Positives = 125/350 (35%), Gaps = 21/350 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +   I+ I+ + LY  K F   +  A ++   +  +++ F+S  ++     + 
Sbjct: 1   MKSGKIFLICFILVILSLLLYLFKSFLLVMAIAALMAVATSNLHAKFLSLTKQRKLLAST 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     ++      I    +            L +
Sbjct: 61  LTTSFMILLFFAPFIYTSIELAKALKNFDINLITQTLDYIKHYEF-----------SLPS 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +K         +       +AS F      + + +  + +  FF    G  +
Sbjct: 110 SLEFLEPKIKEFIAELDLNSLYRQALTYASSFTKSGAKFLMDMALICVFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L S+   +      +I   V  V+      M I+AI +G + G   +  G    +  
Sbjct: 170 VIYLKSIVP-INKTELDEILGEVGNVMAVVLYSMIIVAIFQGALFGIIMFFYGYDGLLMG 228

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI-ELFIVDKTLRP----- 298
            +      +   G  + +  VS+Y    GN+ +A  + ++  I   F+ D  ++P     
Sbjct: 229 VIFAVSSLIPAVGGALVYVPVSLYTFASGNLSSAIVILIYSFIMISFVADTLIKPLIIKW 288

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               LV  P  +  L  F  ++ G+ + G  G+ +GP ++       +  
Sbjct: 289 INEKLVKTPTNINELLIFLAMIAGISSFGFWGIILGPAILTFFISTLRLY 338


>gi|222479132|ref|YP_002565369.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452034|gb|ACM56299.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 368

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/351 (14%), Positives = 113/351 (32%), Gaps = 27/351 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + ++    + +  +  +    F AP+  A+ + +++  ++     +    +   A+
Sbjct: 1   MDEKRFVIALFGLAVGALVGFIAYRFVAPLTVAVFLYYSTRRLFHRLE-RFRLPARVRAM 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A   +    I  L +     ++E +  + +  +A   G              W  +L  
Sbjct: 60  SALSLIAVPLIGLLSYTMLLLVIEARRFIEQYPVAETVGAE----------NSWVGDLAE 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +    E+      I+F    A+          LS++  I+  ++   DG   
Sbjct: 110 LSNPTFDGIMQAYESGQLDPLINFASEQATLLASTLSGLVLSLLITIVVTYYLLLDGSKF 169

Query: 185 SQQLDSL-----GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
            + L +            A   ++  ++   + +      I  +        A  L  VP
Sbjct: 170 HEWLLTFDDDAVVREYLEAVDAELEAVLYGNLLNVIAISIIAVVAYTGYNVIAPELVEVP 229

Query: 240 SHVALGVITAIMAMIPGGA---------PISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
                G +T + ++IP             ++    ++   I   ++ A  L L   +   
Sbjct: 230 YPALAGALTGVASLIPVIGMKIVYLPLAAVTAVPAALGDEISALVYVAGFLVLAAIVVDT 289

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           I D  LRP+  G              + G    G  GLF+ P+++ L    
Sbjct: 290 IPDIVLRPYFSGKTT--HVGLLMLAYIFGPVVFGFHGLFLAPIVLVLALTF 338


>gi|213421990|ref|ZP_03355056.1| hypothetical protein Salmonentericaenterica_31373 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 215

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 66/207 (31%), Gaps = 3/207 (1%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N  D + +++    +  L   + ++ + + +FF  +D   +   +  +          ++
Sbjct: 3   NMGDSVVKYSLASLVGLLTLAVYLVLVPLMVFFLVKDKEQMLNAVRRVLP-RNRGLAGQV 61

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              + + I +   G  +  +  G+     + L G+   + L V+     +IP       T
Sbjct: 62  WNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVT 121

Query: 264 AVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              +   L   G        F    I   +    L P L    + L  L     +V    
Sbjct: 122 IPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGG 181

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMA 348
             G  G+F    L  LI  +       
Sbjct: 182 LWGFWGVFFAIPLATLIKAVVHAWPDG 208


>gi|216263881|ref|ZP_03435875.1| membrane protein [Borrelia afzelii ACA-1]
 gi|215979925|gb|EEC20747.1| membrane protein [Borrelia afzelii ACA-1]
          Length = 362

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 108/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                       +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  RPWRIESVFYCIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KVDSSVINDINFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFGMKLDKAFKKPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V+T +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLTFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTAVQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLIAYPFTVIVKVIV 330


>gi|119898053|ref|YP_933266.1| hypothetical protein azo1762 [Azoarcus sp. BH72]
 gi|119670466|emb|CAL94379.1| conserved hypothetical membrane protein [Azoarcus sp. BH72]
          Length = 376

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 96/327 (29%), Gaps = 17/327 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I + L+ +      V +  +       +          + T   ++   ++  L ++  +
Sbjct: 49  IGLLLWAIADVVLLVFAGALFALFLRGLVEPVARGARVTDTTALILVLGALGGLVVLGGV 108

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           FL      ++ EL  ++  A        R        +   +L      + + ++     
Sbjct: 109 FLGGETATQLDELGPRLHEAWTQMQRGMREYQIGRALLAERDLTALVPQNAEWVER---- 164

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
                                L        ++    +      +    L  L        
Sbjct: 165 -------------IGGLFSTTLGAIAGFFIVMFIGLYGAVSPQTYRDGLLYLVPRDSRER 211

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
             ++   V   +R+  LG  I  +  G  +    WL  +P  +ALG+I   +   P   P
Sbjct: 212 AAEVMDEVVDTLRNWLLGTFIKMVVVGTAVTIGLWLLDIPLALALGLIAFALEFAPYVGP 271

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           +     ++ + +      A  + L         +  L P +    +KLP   T    V  
Sbjct: 272 VLAALPAVLVALALGPQQALSVVLLYLGVQAAENYVLSPLVDLRSVKLPPALTIAAQVLL 331

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESI 346
              +G LG+     L A   V+ +   
Sbjct: 332 GALLGALGVMFATPLTATGVVLVRMLY 358


>gi|161506667|ref|YP_001576617.1| putative permease [Lactobacillus helveticus DPC 4571]
 gi|160347656|gb|ABX26330.1| putative permease [Lactobacillus helveticus DPC 4571]
          Length = 344

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 106/344 (30%), Gaps = 19/344 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R+++  II+  LY ++     +L   I  +    +         +  +  
Sbjct: 6   QKFKNNIPLRRFVVFLIIVAFLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYVPKMPTGA 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+  + ++ L    +       + ++ ++V  V+   +                   E
Sbjct: 66  IVVVTYLIILALLYFFITVYMPMLVGQISKMVKSVMAFYES-----------------DE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +          + + F    A+  G + +   +S+I          +  
Sbjct: 109 SSRLLSYATHYISKNEIITQAKHAMTFAFHTATSIGTLTITTFMSLILSFFYTIELKKMR 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  + S          +   +               IAI    +      +  +P  
Sbjct: 169 EFTSLFVKSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           VALG++  I++++P    I     +SI     G I     +F+   I   I    L P  
Sbjct: 229 VALGLMVFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFVMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +    +LP   TF  L+      G  GL +G  +   +  +   
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLNI 332


>gi|78185668|ref|YP_378102.1| hypothetical protein Syncc9902_2101 [Synechococcus sp. CC9902]
 gi|78169962|gb|ABB27059.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 363

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 89/300 (29%), Gaps = 13/300 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F++   L     F    ++A +I F         + +          +  +    L   
Sbjct: 21  VFVLKRVLVQFAPFPGLFITAALIAFLLDIPCRWLMGR-GLPRLPAITVVVLLTAGLLGF 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            ++ L    ++++ +L+S                            +    S   S    
Sbjct: 80  AVVELLPLLVVQLSQLISAAPSLLTAAEQGINHGQAWAIAHGLPADFADLSSDLVSQI-- 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +     + +         +   ++ + +++   F      SI+  L       +
Sbjct: 138 ------SRVATQLSQRLLSILGATVGTSINTVIVLVLAVFLLLGADSITAGLAQWLPARW 191

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 ++  + +  R  F G  ++A+         + +  +P  V   V+     +IP 
Sbjct: 192 REL---VTTTLGRTFRGYFAGQVVLALILSGGQLLVFTVLEIPYGVLFAVLIGFSTLIPY 248

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            + ++   VS   L   +      L         IVD+ ++P L+G  + L        L
Sbjct: 249 ASALTIVFVSAI-LGVQDPRTGLELLAAAIAVGQIVDQVIQPRLMGSIVGLQPAWLLIAL 307


>gi|260655571|ref|ZP_05861059.1| membrane protein [Jonquetella anthropi E3_33 E1]
 gi|260630019|gb|EEX48213.1| membrane protein [Jonquetella anthropi E3_33 E1]
          Length = 343

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 100/338 (29%), Gaps = 26/338 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + +  +   L   +  F P+L A ++ F   P      + +         +    V+
Sbjct: 11  VGLLTVIAVGAVLNVAQNVFMPLLIAWLLSFVVAPAVRFLTAHRVP-----MWLTVFLVI 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    +  +       M E +  V +  +  + + + +S                    
Sbjct: 66  GVLFAIVFGVVTVISDRMSEFIQIVPMYYERLLTIVKDVSSRLSVPP------------- 112

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                +       G     R     G +F     +++  I  +F      +   +   + 
Sbjct: 113 -----TFWNTIDWGSQLRLRLLQLSGSVFSLSSSTVMVFIFLMFILVGSPYVELKLRRAF 167

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
            +         +   +   I      M +I+   GL +  A  L  V    + G++   +
Sbjct: 168 ADEKSFHRVVGMLATISSQIGRFLGVMALISAVTGLCVWMALSLLKVEFAASWGLLAFAL 227

Query: 252 AMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
             IP    I  +   I + +              L       ++   + P ++G  + L 
Sbjct: 228 NFIPTVGSIVASIPPILVAVVQFYPGFVLPLATALSLLAIQMLIGNIITPKVMGDRLNLS 287

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
            +     L+      G++G  +   L A++ ++ +   
Sbjct: 288 PVVILLSLLFWGWLWGVMGALLAMPLAAILKIVCENFP 325


>gi|289192288|ref|YP_003458229.1| protein of unknown function UPF0118 [Methanocaldococcus sp.
           FS406-22]
 gi|288938738|gb|ADC69493.1| protein of unknown function UPF0118 [Methanocaldococcus sp.
           FS406-22]
          Length = 334

 Score = 85.0 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 122/336 (36%), Gaps = 19/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + + + +I+ ++++ LY L  F   +  +    + + PIY+    K   + T  A +A  
Sbjct: 7   KYLRKGVIVGLLIMLLYILWPFIDVLAYSCAFAYMALPIYNLLRKKF--NKTISAGLAIS 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +V  ++     M  +                     S  P       ++   + 
Sbjct: 65  IYIVPIMVITIYTILTFMEIILSF---------------NTKSIEPYINEILSIYNSFML 109

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                     T      + ++    S   +      +  I ++   F+F RDG  +   +
Sbjct: 110 ERIIDNGQFLTKYIDEFVKYLINQVSGKIVDIGYLIIKAIMVLFLTFYFLRDGDKVKNLI 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S     +    +     +    ++ F+    ++I   ++    Y +  VP      +IT
Sbjct: 170 ISFVPDEYKEKMRIYLSYLHDSYKNLFISCVSLSIIITILSYIGYLIVAVPYAELFAIIT 229

Query: 249 AIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I A++P          ++IY  +  +   A  +F++G + L I  D  +RP+LV   + 
Sbjct: 230 GIFALLPILGGWMVYISIAIYFFLMHDYTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVD 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  +      +    ++GL G  IGP+++  +   +
Sbjct: 290 IHPVLVVIAFLMAPLSLGLSGFAIGPLVVGALNAFY 325


>gi|15669367|ref|NP_248172.1| hypothetical protein MJ_1177 [Methanocaldococcus jannaschii DSM
           2661]
 gi|8928508|sp|Q58578|Y1177_METJA RecName: Full=UPF0118 membrane protein MJ1177
 gi|1591804|gb|AAB99180.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
           2661]
          Length = 334

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 121/336 (36%), Gaps = 19/336 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + + + +I+ ++++ LY +  F   +  +    + + P+Y+    K   + T  A +A  
Sbjct: 7   KYVRKGVIVGLLIMLLYIIWPFIDVLAYSCAFAYMALPVYNILRKKF--NKTISAGLAIS 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +   +   ++     M  +                     S  P       ++   + 
Sbjct: 65  IYILPIMTITIYALLTFMEIILSF---------------NTKSIEPYINEILSIYNSFML 109

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                            I ++    S   +      + +I ++   F+F RDG      +
Sbjct: 110 ERIINNEQIIAKYIDEFIKYLVSQFSGKIIDVGYLIVKVIMVLFLTFYFLRDGDKAKNLI 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            S     +    +     +    ++ F+    ++I   ++    Y + GVP      +IT
Sbjct: 170 ISFVPDEYKEKMRIYLSYLHDSYKNLFISCVSLSIIITILSYIGYLILGVPYAELFAIIT 229

Query: 249 AIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIK 306
            I A++P          ++IY  +  +   A  +F++G + L I  D  +RP+LV   + 
Sbjct: 230 GIFALLPILGGWMVYISIAIYFFLIHDYTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVD 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +  +      +    ++GL G  IGP+++  +   +
Sbjct: 290 IHPVLVVIAFLMAPLSLGLSGFAIGPLVVGALNAFY 325


>gi|289434703|ref|YP_003464575.1| hypothetical protein lse_1338 [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170947|emb|CBH27489.1| membrane protein, putative [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 344

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 104/339 (30%), Gaps = 19/339 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R+ +  ++   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNKSVKRFGVFLLLAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + ++  +        ++ +LV+                         ++   
Sbjct: 67  LLYVVIATVIVLVFVKYIPVLGDQVNQLVNFANKFFTT--------------DSNNDFIN 112

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++      I+  T      +           M      +  +F  +            
Sbjct: 113 YIINLANQFDIMKYTEQGVTMLLTYLTNVGTVLMNVFIALMLSLFFSLGKDHLVSFTNQF 172

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S             +  K      KVI        IIA+   ++   A W+ G P  + L
Sbjct: 173 STSKIGFIYEEAKFFGSKFVGTFGKVIE----AQFIIALVNAILTTIALWILGFPQLMTL 228

Query: 245 GVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  ++ +IP    I     ++I     G +     + +   I   +    L P L+  
Sbjct: 229 SIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILIVVMIIHALESYVLNPKLMSA 288

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 289 KTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|86139434|ref|ZP_01058003.1| hypothetical protein MED193_13328 [Roseobacter sp. MED193]
 gi|85823937|gb|EAQ44143.1| hypothetical protein MED193_13328 [Roseobacter sp. MED193]
          Length = 347

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 94/334 (28%), Gaps = 16/334 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
              ++ ++   L   +    PVL  +I  +       + +            +  +  + 
Sbjct: 11  SLALILMVGWLLVAGQEILLPVLVGIIAVYILTTAADALVP-VPLIGRLPRRLRRLLAVV 69

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L  +  L L  +       L + +     +   +        G                 
Sbjct: 70  LITLGFLILASFITASATSLSAALPQYAANFDALQSKFLTAVGMKQEPNWGNLGEYLLDM 129

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +   +        I           +  +     +  +                   +LG
Sbjct: 130 VDATTLMPTALATISNGGSLIIAAALYAIFILAELDSLPDKTR-------------RALG 176

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            H    +  ++ R + + I +     T++ +   LV  +   L G+       +I  ++ 
Sbjct: 177 NHAQSEHTMELVRKINERIGNYLAAKTLVNVILALVSFALLKLLGIAHPAFWAIIIGLLN 236

Query: 253 MIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP    +      V++ L+   +  +A    +   I   +V   + P  +G  + L   
Sbjct: 237 YIPYIGSVIAVVFPVTMSLIQFTSFSHAGLALVLLMIPQIVVAYYIEPKFLGRSVNLSPF 296

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                L       G+ G  +   L A++ +I  E
Sbjct: 297 TVLLALAVWSTLWGMTGAILAVPLTAMVMIILAE 330


>gi|15611581|ref|NP_223232.1| hypothetical protein jhp0514 [Helicobacter pylori J99]
 gi|8928476|sp|Q9ZLR4|Y567_HELPJ RecName: Full=UPF0118 membrane protein jhp_0514
 gi|4155053|gb|AAD06090.1| putative Inner membrane protein [Helicobacter pylori J99]
          Length = 349

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 130/356 (36%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      LY  + F    L A ++    + +      +   S+   + +  +
Sbjct: 4   QYFFWILFLIGFYWMLYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y G   + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSAASITGYLLKVSSYIGKYSLKLVTDALFILGLLFFFFYYGEKFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G+     G        +  
Sbjct: 171 LGVLPLEM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGTMIIWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 290 IFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|325181761|emb|CCA16217.1| transmembrane protein putative [Albugo laibachii Nc14]
          Length = 449

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/351 (10%), Positives = 92/351 (26%), Gaps = 57/351 (16%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYS-----------------SFISKKEESSTFLAV 64
             L + +    P   ++ + +   P+                       +   S      
Sbjct: 89  YLLSWFQEALIPFFLSIFLMYLVDPLVQLIDVSPRQFLCFCTSSSRLTRR--ASRGCSRA 146

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            ++   + +       L Y  ++ +  L                                
Sbjct: 147 FSSSCAILIIGSFFGLLGYIIVVSVHAL--------------------DMASYQIGYNDL 186

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  S  +     + T   D + + A       +D    +    I L +F      +
Sbjct: 187 VTNIETISNGVGVPLNITTTLHDNVEKVARIIITQTMDLLSVMFVTSIYLLYFLATRTRV 246

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                             +   V + I+        +++   +++   Y    V   +  
Sbjct: 247 -------------GDIGGVWSRVDRDIQRFVSLKCFVSLFVAVLVTIVYVWLNVGLAIVW 293

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIK-----GNIFNATCLFLWGAIELFIVDKTLRPF 299
           G++T I+  IP    I  +A+ + +++       N        +        V   + P 
Sbjct: 294 GILTFILNWIPNVGAIIASALPMVIIVITPSNLMNPMEKFLAIVLPMSFHMFVGNFIEPK 353

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           + G  ++L  +     L       G++G+ +   L A   ++     +  +
Sbjct: 354 VFGRKLELDPVIVILSLSAWGLLWGVVGMMLSVPLTAAFKIMLSHLKLWPE 404


>gi|52143494|ref|YP_083335.1| hypothetical protein BCZK1740 [Bacillus cereus E33L]
 gi|51976963|gb|AAU18513.1| conserved hypothetical protein [Bacillus cereus E33L]
          Length = 337

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 112/341 (32%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERII- 166

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           + + +       +F            +          +IA+   ++   A  + G P  +
Sbjct: 167 TFTSKFKKSKLKIFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|33151678|ref|NP_873031.1| hypothetical protein HD0459 [Haemophilus ducreyi 35000HP]
 gi|33147899|gb|AAP95420.1| conserved probable membrane protein [Haemophilus ducreyi 35000HP]
          Length = 299

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 97/287 (33%), Gaps = 12/287 (4%)

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
           +      +A   ++ L ++    L       ++E  + +             + ++    
Sbjct: 3   NRRIPLGMAITILLGLIVLIFFLLAGMVNSAVQEFTASIPQYKVLLGQRLETIFNL---- 58

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               L   HL    + + ++  F  ++ ++F+ R    F  +  +  + ++ +I  L   
Sbjct: 59  ----LNHYHLPLNITQEEIANKFDPSSIMNFVSRLLLSFSGVLSNLFVLLLVLIFMLLES 114

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
               + ++     L      +  +     V + +       TII++  GL +     L  
Sbjct: 115 PVAKYKLA---LVLSPDDDLSNEEHYIERVLEGVIGYLGVKTIISVLTGLSVCLLLVLLN 171

Query: 238 VPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           V   V  G++  ++  IP    I     V +  L+         + +       +    +
Sbjct: 172 VQYAVLWGILIFLLNYIPNIGSILGSIPVVLQALLLNGFTVGLTVLIGVVAINMLFGNVV 231

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            P ++G  + L  L  F  L+     +G +G+ +   L   + +  +
Sbjct: 232 EPKMMGKRLGLSTLVVFLSLLFWGWLLGTVGMLLSVPLTMSLKIALE 278


>gi|317152380|ref|YP_004120428.1| hypothetical protein Daes_0664 [Desulfovibrio aespoeensis Aspo-2]
 gi|316942631|gb|ADU61682.1| protein of unknown function UPF0118 [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 384

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 96/321 (29%), Gaps = 11/321 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +++  ++  L +L G   P + AL++ +   P+ S    +   S     V+   
Sbjct: 14  RMVLGALLIVGLIWMLGYLSGVLVPFVVALLLAYLLNPLTSRVE-RVVRSRWLAVVVTVT 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +       +  +      E   +   +     +     R    +P  +W          
Sbjct: 73  LLAGTVTGLVWVMAPLIGAEFSHMGRVLADLAGNADLARRVREYLPDEVWVWLRALADDQ 132

Query: 129 HPQSLKILSET-FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF---FFYRDGFSI 184
           + ++L   +         +  I             +   ++ + + L    F   D   I
Sbjct: 133 NVRALFTSNGAMEAARKVVATILPGVRGVLSGTASFLAGLLGLGVILLYVVFLLMDFGRI 192

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            ++        + A          + +   F G  IIA+  G +L   + + G+P  V L
Sbjct: 193 RERWPEYLPQQYRARAIDFMGEFEQTMSLYFRGQVIIALLVGALLSVGFMIIGLPMAVIL 252

Query: 245 GVITAIMAMIPGGAPISFTAVSIYL------LIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           G+   I+ + P    +      +          +        +     +   I +  L P
Sbjct: 253 GMFIGILNIAPYLGTLGLLPAVLLAGLDSLEAGQPPWIGILLVLAVFVVVQAIQEIILIP 312

Query: 299 FLVGGPIKLPFLPTFFGLVGG 319
            + G  + L        L   
Sbjct: 313 KIQGENLGLSPWLILLSLSIW 333


>gi|317013986|gb|ADU81422.1| hypothetical protein HPGAM_02910 [Helicobacter pylori Gambia94/24]
          Length = 349

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 130/356 (36%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      LY  + F    L A ++    + +      +   S+   + +  +
Sbjct: 4   QYFFWILFLIGFYWMLYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y G   + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSAASITGYLLKVSSYIGKYSLKLVTDALFILGLLFFFFYYGEKFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G+     G        +  
Sbjct: 171 LGVLPLEM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIIWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 290 IFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|318042146|ref|ZP_07974102.1| hypothetical protein SCB01_10570 [Synechococcus sp. CB0101]
          Length = 347

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 124/321 (38%), Gaps = 5/321 (1%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
            L+ F   ++ A ++     P++     +      + A +  V  + + + P+  L    
Sbjct: 24  ILQPFAEILVWASLLAVILKPLHVWLQRRLRLGRWWAAGLIVVVGLLVLLGPVGALAAAL 83

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +  + ELV  V    Q     P  L +IP    A       +       + + +   T+ 
Sbjct: 84  LSNVSELVHLVRHGQQSLPQPPTLLVEIPLVGPAIRPLWHGVIGDLHDLLRTHSETLTSL 143

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +       G+ FL + +S++   + L         + + LD L       + + +  
Sbjct: 144 GTRLLETTLAKGLGFLKFVVSLLVAALMLVHSEALLLRLRRLLDRLVP----EHSETVQL 199

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           I    +R+   G+  +A  + L++G     A VP    L V+  I+ ++    P+    V
Sbjct: 200 ITATTVRNVSRGVVGVAFLQSLLIGLGLVAADVPWSGLLTVVALILCLLQI-GPLPVVIV 258

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           ++ +           L     +   +++  L+P L+   + +P L    G++GG    GL
Sbjct: 259 ALAMAWNHLPPLLALLLSLWLVAATLLEHLLKPLLMARGLPVPMLVILAGVLGGTLKGGL 318

Query: 326 LGLFIGPVLMALIAVIWKESI 346
            GLF+GPVL++L     +  +
Sbjct: 319 AGLFLGPVLLSLGYHFVRLWV 339


>gi|56750221|ref|YP_170922.1| hypothetical protein syc0212_c [Synechococcus elongatus PCC 6301]
 gi|56685180|dbj|BAD78402.1| hypothetical protein [Synechococcus elongatus PCC 6301]
          Length = 321

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/304 (16%), Positives = 106/304 (34%), Gaps = 13/304 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           VL A ++ F         + +     +   +      + L I    +L    ++E+  L 
Sbjct: 2   VLVAALMAFILDLPVRWLVQR-GLPRSLALLTVLGGGIALIIALATWLLPPLLVEVNVLT 60

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +                          W        +          T+ ++ +    
Sbjct: 61  RALPHWYDTAKLEVLQFEAWTLSFNLPLDWVSLFQRVVTE--------VTDLVETLSTQL 112

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               + F D  L+ +  ++   F    G  +S  +      ++      ++  + +  ++
Sbjct: 113 LSLTLEFFDGALNFLITVVLTLFLLMYGEEVSGTVLQRLPAIWRDR---LAIGLRQKFQA 169

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  IIA    ++L  A  L  +P  + LG++  + ++IP    +   ++   LL   
Sbjct: 170 FLGGELIIASLYSVLLLVALSLLKIPFALLLGLVLGLGSLIPFLDILLVISLCGVLL-FQ 228

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           +   A  LF+   +   I D  + P L+G  I L  +     ++ G++  G+LGLF+   
Sbjct: 229 DPAIAAKLFITVFLLGQINDNLIEPRLMGQIIGLNPVWILLSVLLGLKIFGILGLFVAVP 288

Query: 334 LMAL 337
           L +L
Sbjct: 289 LASL 292


>gi|219684894|ref|ZP_03539836.1| membrane protein [Borrelia garinii PBr]
 gi|219671839|gb|EED28894.1| membrane protein [Borrelia garinii PBr]
          Length = 362

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/343 (13%), Positives = 109/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                       +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  RPWRVESVFYFIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMRQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N  D+I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KVDSSVINDINFSDYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFGMKLDKAFKKRVSTRFIVALDTINNQIGKYLGIKILMSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V+T +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLTFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTSVQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLIAYPFTVIVKVIV 330


>gi|154173718|ref|YP_001408692.1| acid membrane antigen A [Campylobacter curvus 525.92]
 gi|112802392|gb|EAT99736.1| acid membrane antigen A [Campylobacter curvus 525.92]
          Length = 348

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 118/356 (33%), Gaps = 21/356 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            N +      I   + + +Y  K F   +  A ++   +  I   F+   +E  T  A +
Sbjct: 3   SNSRIFFGIFIFVALSLVVYLFKPFLLDIFIAALLAVATSNINVLFLKLTKERKTLSAAL 62

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T  +  LFI P L+                +      I    +            L + 
Sbjct: 63  TTAVLFTLFIAPFLYAVIELTRYASTFNMNNITGTIDYIKNYDF-----------ALPSS 111

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                   K              I    +  G +   +   + F+++  FF    G  + 
Sbjct: 112 IEFLEPKFKEFIAQIDIKAITANILTNLANLGKLSAKFITDVAFILVFFFFAILYGNELV 171

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +              I   +  V+      + I AI +GL+      + G    +   
Sbjct: 172 IYMKKALPMKESESGF-ILSEMANVMSVVLYSIIINAILQGLLFAFITIIYGYNGFLMGI 230

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRP------ 298
           +   +  +   G  +++  +S+Y L  GN   A  + L+  I + ++ D  L+P      
Sbjct: 231 LFAFMSLIPVVGGVLAWAPISLYELANGNATGAIVIALYTIIVISVIADTFLKPLVIKFI 290

Query: 299 --FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              LV  P K+  L  FF ++ G+ T G  GL +GP ++       K  ++  + +
Sbjct: 291 NDKLVKIPTKINELLIFFAMIAGITTFGFWGLILGPAIVTFFLSTIKLYVLLKERS 346


>gi|51598269|ref|YP_072457.1| hypothetical protein BG0006 [Borrelia garinii PBi]
 gi|51572840|gb|AAU06865.1| conserved hypothetical integral membrane protein [Borrelia garinii
           PBi]
          Length = 362

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 109/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                       +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  RPWRVESVFYFIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFIFVYYSVTVLMRQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KVDSSVINDMNFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD + +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFGMKLDKVFKKRVSTRFIGALDTINNQIGKYLGIKILMSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V+T +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLTFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTSVQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLIAYPFTVIVKVIV 330


>gi|73670520|ref|YP_306535.1| hypothetical protein Mbar_A3065 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397682|gb|AAZ71955.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 342

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/346 (10%), Positives = 103/346 (29%), Gaps = 24/346 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    +  + ++      I+ + +  +         ++ I     P+      K      
Sbjct: 3   MENQSIPARILLYSTAAVILTIGMREIAPILTVFFFSVFIALIFTPLVRWLKKKGIPG-- 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               ++    + LF   +L L         +  S++             L+         
Sbjct: 61  ---GLSVFLAILLFAFIVLILGVIVASAAIQFGSQIPQYQDQLTDFMSNLAKYIPSYDGF 117

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +                  +    +     F        ++   +   +I+   F   +
Sbjct: 118 SV----------------QSIIRGIVSITVSFVVNIFNGLVNTGTTAGIIILTTAFMLIE 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             ++ ++++   E       +    I  + +    +    I +   + +   + ++G+  
Sbjct: 162 ATNVPEKINEKIEKQSELQLR--LSIFSRKLVKFIVIRAEINLITAVAITITFLISGIDY 219

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            +  GV+  I++ IP    +       +  L K     A  + +  A    I +  L P 
Sbjct: 220 AILWGVLIFILSYIPYIGLVIASIPPIVIALFKYGPLGALAVIVVIAAVDGITENVLFPS 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L+G  ++L     F  L+     +G  G  +   L   + ++++  
Sbjct: 280 LMGKGLQLSPAFLFLALIYWNFVLGGAGALLSIPLTMALKIMFESF 325


>gi|222100216|ref|YP_002534784.1| hypothetical protein CTN_1242 [Thermotoga neapolitana DSM 4359]
 gi|221572606|gb|ACM23418.1| Hypothetical Protein CTN_1242 [Thermotoga neapolitana DSM 4359]
          Length = 338

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/351 (11%), Positives = 99/351 (28%), Gaps = 18/351 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  + +       + + I  +        FA +   +       P+   F   +      
Sbjct: 5   RRFVEDKAFFFTTLYVLISFLVFKVFPEVFAVITMMIFFTLLLDPVVRFFEKMRLGKR-V 63

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V+A +    + +  L  +      E    +  +    ++ +                 
Sbjct: 64  SRVVALLLFFFVVVYSLYVIIPPVFNEFGNFIEFITGVFENKV----------------W 107

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +     TFL+    D +    S     FL     ++F +  L +     
Sbjct: 108 RDYVRSPELVPVFDKIMTFLEPKLNDLLNYVFSLVTTNFLSVTTVVVFTLFGLGYTIFYV 167

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+    ++         +     V + +      + I A+  GL     +    +   
Sbjct: 168 REIADFFVAIYPKSAREEARDFLISVYRSMGRYIRVIFINALIIGLSYWIVFETFDLKYS 227

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             + +   +   IP    +      +   +   +     + L+  +        +   L+
Sbjct: 228 AIISLWAFVTNFIPIVGVVLEYVPVLLFSLTLGVKGVLLIALFAVLIHAAA-FIVFIQLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            G  KL  +     ++   +  G+ G F+G  L     V WK+ +  + E+
Sbjct: 287 KGLEKLNPVYIILSILFFGKLFGMFGSFVGVPLALFFKVFWKKFLEPLLES 337


>gi|284929637|ref|YP_003422159.1| putative permease [cyanobacterium UCYN-A]
 gi|284810081|gb|ADB95778.1| predicted permease [cyanobacterium UCYN-A]
          Length = 353

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 98/341 (28%), Gaps = 15/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++I+      ++ ++     + +A+II         +   K      +  ++    ++
Sbjct: 7   IGFVILSFSFYIVWKVRQLLILLSTAVIIANFLNHGVQALQ-KLGVKRFYSVLLLIAFLL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + +   L++FY    +  EL   +                             +    Q
Sbjct: 66  VILLKFFLYIFYPSSEQFPELFLLISQGIDRLTSPIHNFIVQLDPDLTKTFPNLNKIIEQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                            I           L   L+ + ++I       +  +  Q    L
Sbjct: 126 ----------LHPLFQKIAGQGLSVFYTTLGIPLTFLLLLILSLMLLVNPTAYRQGCIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             + + +            ++   + +    I    +      +  +P      V+  I+
Sbjct: 176 FPYFYRSRINLALIQCDIFLKGELIALLFRMIMIFFLAFIGLSILKIPLSFTQAVLIMIL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFL----WGAIELFIVDKTLRPFLVGGPIKL 307
            + P   PI      + +        +  + +    +  I     ++ + P ++   I L
Sbjct: 236 NLFPNIGPILSFIPPMAIASLETPLKSLAVLIIFLSFYLIIRQTENRVITPLIIKNRISL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P        V      G LG  +   L  +I+V+ KE I+ 
Sbjct: 296 PPGFILLSQVLFAMFFGALGFLLAAPLTIIISVLVKEIIVK 336


>gi|212223531|ref|YP_002306767.1| hypothetical membrane protein, conserved [Thermococcus onnurineus
           NA1]
 gi|212008488|gb|ACJ15870.1| hypothetical membrane protein, conserved [Thermococcus onnurineus
           NA1]
          Length = 333

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/346 (13%), Positives = 111/346 (32%), Gaps = 29/346 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     I   + + ++ +    +    +P++ A+ + +  +P +     +     +   +
Sbjct: 1   MELEAAIWIAISLIVLYLVWETVSPILSPIIIAVTLAYILYPFHERLARRMGNRLSAFTM 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              ++++  F +    L                            +              
Sbjct: 61  TILLTILTFFFIIGFAL------------------------WMNDVKHSLAHYIDGFFTW 96

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +           L  +       +   +        L  I M+ A +    +  +I
Sbjct: 97  LLTFNLPPSLYELVQKLAEDIPKRFEEYILGYTYSLPKLSLQAIVMVFAFYGILVNARAI 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
            +++ SL          K+     + + +   G   +++ +G+   + + L G+      
Sbjct: 157 KREVYSLLPSENRELAIKLLERAGETLHNLLRGWLSLSVLKGIFAAAGFLLFGMAETGGA 216

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPF 299
           +A G+ T I  ++P              LI G       LF +  I     + D  LRP 
Sbjct: 217 IAAGIFTVIFELLPVFGGWVVWLAGTVYLINGGNILWGILFAFYGIVFISPLPDFLLRPR 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +      +  L +  G+ GG    G +G+ IGP+ ++L+A + +E 
Sbjct: 277 IAVRERGVNALVSLVGIFGGFLAFGFVGIIIGPLALSLLATLVEEW 322


>gi|323465615|gb|ADX69302.1| Permease [Lactobacillus helveticus H10]
          Length = 344

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 108/344 (31%), Gaps = 19/344 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R+++  II+  LY ++     +L   I  +    +         +  +  
Sbjct: 6   QKFKNNIPLRRFVVFLIIVAFLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYVPKMPTGA 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+  + ++ L    +       + ++ ++V  V+   +                  +E
Sbjct: 66  IVVVTYLIILALLYFFITVYMPMLVGQISKMVKSVMAFYES-----------------AE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +          + + F    A+  G + +   +S+I   +      +  
Sbjct: 109 SSRLLSYATHYISKNEIITQAKHAMTFAFHTATSIGTLTITTFMSLILSFLYTIELKKMR 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  + S          +   +               IAI    +      +  +P  
Sbjct: 169 EFSSLFVKSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLTIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           VALG++  I++++P    I     +S+     G I     +F+   I   I    L P  
Sbjct: 229 VALGLMVFILSLVPVAGVIISLIPLSMVGYSVGGIRYVIYIFVMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +    +LP   TF  L+      G  GL +G  +   +  +   
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLNI 332


>gi|216264452|ref|ZP_03436444.1| membrane protein [Borrelia burgdorferi 156a]
 gi|215980925|gb|EEC21732.1| membrane protein [Borrelia burgdorferi 156a]
 gi|312148215|gb|ADQ30874.1| membrane protein [Borrelia burgdorferi JD1]
          Length = 362

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 109/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +           +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  KPWRVESVFYCIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFEMKLDKAFKKPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V++ +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLSFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLISYPFTVIVKVIV 330


>gi|311897927|dbj|BAJ30335.1| hypothetical protein KSE_45540 [Kitasatospora setae KM-6054]
          Length = 344

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 79/287 (27%), Gaps = 20/287 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P+L A++I     P+    + +        A    + ++ +    L  +         
Sbjct: 45  VVPLLIAVLITALVEPVSRRLVVR-GLPRAPAAAAGCLLLVVVVGGALWVVVRLISDAAA 103

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L + +  A +       +   + G     E                   L  +    + 
Sbjct: 104 GLAASLRAAAERASGTDPFAQAVRGAASGLEQ------------------LGRSLGAGVV 145

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A     +        +  +   FF  RD   +   L  +           ++R     
Sbjct: 146 SGALGGVGLAAQVLACGVLTLALAFFLLRDRPQLVAALRRIAPAGQEEKVLGVARTGYGA 205

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYL 269
           +     G TIIA  +   +     L GVP  + LG +  + A +P     +S     +  
Sbjct: 206 MSGFMRGTTIIAGIDAGFIALGLTLLGVPHALGLGALVFVGAYVPYAGAFLSGLTAVVVA 265

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              G +  A   F        +    L+P +    + L        +
Sbjct: 266 FADGGLGEALWAFGIVLGVQALEGAILQPAVQSRTVMLHPAVVLLTI 312


>gi|301053487|ref|YP_003791698.1| membrane protein [Bacillus anthracis CI]
 gi|300375656|gb|ADK04560.1| hypothetical membrane protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 337

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 113/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYFVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|311894168|dbj|BAJ26576.1| hypothetical protein KSE_07360 [Kitasatospora setae KM-6054]
          Length = 379

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/309 (11%), Positives = 91/309 (29%), Gaps = 15/309 (4%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P       +         ++A +  + L     + +      +  +L  +V       
Sbjct: 84  LRPPVDLLARRM--PRAVAVLLAVLGALVLLAGLGVLVAVVVRAQAGQLGGQVRGGMDRL 141

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                           ++L  +               L  +    +   A       ++ 
Sbjct: 142 EHWLEGPPLHARPGTLTDLRHRLAD------------LVGSHRQAVLSTAFTGAGRLVEA 189

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
                  +    F    G  +    + L      +   +  R   +       G+ ++A 
Sbjct: 190 AAGAALALFCAVFLAHSGERMWDWANGLLPARTASRRHRAGRAAWRTFAGYTRGLFLVAG 249

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLF 282
              +++G    + GVP  V L  +  + A++P    PI+    S+  L       A  + 
Sbjct: 250 TNAVLVGVVLAVLGVPLAVPLAGLEFVAALVPLVGSPIALAVASLVALATRGPVTALLVL 309

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +   +    L P ++G  ++L  +     +  G    G++G  +   ++++   ++
Sbjct: 310 ALIVLIGQLEGHVLHPLVMGWAVRLHPVAVALAVAVGGTLGGIVGAAVAVPVLSVGWAVF 369

Query: 343 KESIMAIKE 351
           +E     + 
Sbjct: 370 RELRDGEEA 378


>gi|30261954|ref|NP_844331.1| hypothetical protein BA_1922 [Bacillus anthracis str. Ames]
 gi|47527218|ref|YP_018567.1| hypothetical protein GBAA_1922 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184795|ref|YP_028047.1| hypothetical protein BAS1783 [Bacillus anthracis str. Sterne]
 gi|49477439|ref|YP_036094.1| hypothetical protein BT9727_1762 [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|65319239|ref|ZP_00392198.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
 gi|118477382|ref|YP_894533.1| permease [Bacillus thuringiensis str. Al Hakam]
 gi|165873197|ref|ZP_02217810.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167632969|ref|ZP_02391295.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167638397|ref|ZP_02396674.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170686503|ref|ZP_02877724.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170705931|ref|ZP_02896393.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177650969|ref|ZP_02933866.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190566446|ref|ZP_03019364.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036762|ref|ZP_03104153.1| putative membrane protein [Bacillus cereus W]
 gi|196041872|ref|ZP_03109160.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196047019|ref|ZP_03114238.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|217959430|ref|YP_002337980.1| hypothetical protein BCAH187_A2027 [Bacillus cereus AH187]
 gi|222095573|ref|YP_002529631.1| hypothetical protein BCQ_1913 [Bacillus cereus Q1]
 gi|225863884|ref|YP_002749262.1| hypothetical protein BCA_1988 [Bacillus cereus 03BB102]
 gi|227815257|ref|YP_002815266.1| hypothetical protein BAMEG_2668 [Bacillus anthracis str. CDC 684]
 gi|228914544|ref|ZP_04078153.1| hypothetical protein bthur0012_17740 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228927017|ref|ZP_04090083.1| hypothetical protein bthur0010_17330 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228933259|ref|ZP_04096115.1| hypothetical protein bthur0009_17260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945567|ref|ZP_04107917.1| hypothetical protein bthur0007_17270 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229184160|ref|ZP_04311369.1| hypothetical protein bcere0004_17240 [Bacillus cereus BGSC 6E1]
 gi|229602130|ref|YP_002866326.1| hypothetical protein BAA_1992 [Bacillus anthracis str. A0248]
 gi|254684518|ref|ZP_05148378.1| hypothetical protein BantC_11765 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721276|ref|ZP_05183066.1| hypothetical protein BantA1_02310 [Bacillus anthracis str. A1055]
 gi|254734821|ref|ZP_05192533.1| hypothetical protein BantWNA_06590 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741222|ref|ZP_05198910.1| hypothetical protein BantKB_09477 [Bacillus anthracis str. Kruger
           B]
 gi|254755476|ref|ZP_05207510.1| hypothetical protein BantV_23652 [Bacillus anthracis str. Vollum]
 gi|254760012|ref|ZP_05212036.1| hypothetical protein BantA9_17011 [Bacillus anthracis str.
           Australia 94]
 gi|300117530|ref|ZP_07055317.1| hypothetical protein BCSJ1_01442 [Bacillus cereus SJ1]
 gi|30256580|gb|AAP25817.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|47502366|gb|AAT31042.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178722|gb|AAT54098.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49328995|gb|AAT59641.1| conserved hypothetical protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118416607|gb|ABK85026.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711071|gb|EDR16635.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|167513698|gb|EDR89067.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167531781|gb|EDR94446.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170128933|gb|EDS97798.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170669579|gb|EDT20321.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172083430|gb|EDT68491.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|190562581|gb|EDV16548.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195990645|gb|EDX54622.1| putative membrane protein [Bacillus cereus W]
 gi|196022123|gb|EDX60811.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196027244|gb|EDX65863.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|217066245|gb|ACJ80495.1| putative membrane protein [Bacillus cereus AH187]
 gi|221239631|gb|ACM12341.1| conserved hypothetical protein [Bacillus cereus Q1]
 gi|225790084|gb|ACO30301.1| putative membrane protein [Bacillus cereus 03BB102]
 gi|227006731|gb|ACP16474.1| putative membrane protein [Bacillus anthracis str. CDC 684]
 gi|228599275|gb|EEK56886.1| hypothetical protein bcere0004_17240 [Bacillus cereus BGSC 6E1]
 gi|228814085|gb|EEM60356.1| hypothetical protein bthur0007_17270 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826420|gb|EEM72197.1| hypothetical protein bthur0009_17260 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228832752|gb|EEM78323.1| hypothetical protein bthur0010_17330 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228844863|gb|EEM89905.1| hypothetical protein bthur0012_17740 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229266538|gb|ACQ48175.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|298725065|gb|EFI65720.1| hypothetical protein BCSJ1_01442 [Bacillus cereus SJ1]
          Length = 337

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 113/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|291482855|dbj|BAI83930.1| hypothetical protein BSNT_00768 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 350

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLAVI 65
           G+ R+ I  ++   LY  K     +L   I  F    +              S   +   
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFVSRFFRVSQRVVITF 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  L  V     +     ++++LV ++     H   +P                  
Sbjct: 72  LYILLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPDSIP-----------------F 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                     ++ +     G + +  + +      L   +++I  +  LF   R    ++
Sbjct: 115 FDEITSVFGDINISSYVKEGFNVVYTYLADISTFGLQVVMALILSMFFLFEKKRLSEFMA 174

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   S     +            +          IIA+   ++   A W+   P    L 
Sbjct: 175 KFKTSKLRVFYEEI-AFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLS 233

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++   + +IP     IS   +SI     G       + L       I    L P L+   
Sbjct: 234 IMVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAK 293

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +LP   TF  L+      G+ GL IG  +   +  I   +    +    + +S+
Sbjct: 294 TELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEDRSKGPRENSD 348


>gi|241895774|ref|ZP_04783070.1| permease [Weissella paramesenteroides ATCC 33313]
 gi|241870817|gb|EER74568.1| permease [Weissella paramesenteroides ATCC 33313]
          Length = 346

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 47/333 (14%), Positives = 114/333 (34%), Gaps = 17/333 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + + + +  IL+ LY ++   + VL   I  + +  I S      +    F  +I  +  
Sbjct: 13  VQKLIALIFILIVLYIIRDLISIVLLTTIFSYLAVKIASKINRWTKIPYGFSVLIFFIVS 72

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + +F++   F+    + +   +  +V+   ++   + ++L+D    +      TK+    
Sbjct: 73  IIIFVMAFTFIVPTLVKQFAVIPDEVMKVVKNSPDIKKYLNDTYQNLDLLNEITKNWKSL 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 +           + +      + F+         I    F + +       +  
Sbjct: 133 LESGWDT----LNVIGSVLSKVLLSIFLSFIFAISWQRLRIFGTQFIHSNYPKFFTNVY- 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                       ++     ++ S      IIA    +++        VPS + + ++  I
Sbjct: 188 -----------DLTSTFVLILGSVIEVQMIIAFINTILMVIGLSFLKVPSILVMALLIFI 236

Query: 251 MAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           + +IP    +     +S+             +++  A+        L P L+    +LP 
Sbjct: 237 LGLIPIAGVLLSLIPLSVISFAALGWTGMIEVWILVAVIHLFESYFLHPRLMATRTELPI 296

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             TF  ++     +G  GL IG  ++A I  + 
Sbjct: 297 FLTFATIIVMEHLLGAWGLIIGVPIVAFILNLL 329


>gi|126650595|ref|ZP_01722818.1| hypothetical protein BB14905_08393 [Bacillus sp. B14905]
 gi|126592751|gb|EAZ86750.1| hypothetical protein BB14905_08393 [Bacillus sp. B14905]
          Length = 350

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 96/339 (28%), Gaps = 23/339 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----FISKKEESSTFLAV 64
            G  R++I+  I V+LY ++     +L   II +    + +            +   + V
Sbjct: 8   NGFKRFIILVGIAVALYLMRSMINLILLTFIITYLMNQLTTKTTKKIRKYTPMNEKAVTV 67

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              + ++   +  +         ++ +L   +   N           +      A     
Sbjct: 68  TLYLLLVAGIVAVIYKYLPIVTQQVTQLFDLIASFN------LDPDDNEIARYLAPTFEK 121

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L       +       TN    I +      +           +     F       +
Sbjct: 122 IELGKYLEQGVDITLKNITNIGKIIMQILISLILSLFILLEKKRIIEFTAKFKDSKIGPL 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +L                               IIA    ++   A  + G P  +AL
Sbjct: 182 YDELHYFSRIFIR------------SFGKVIEAQFIIAAVNCVLSVIALSIMGFPHLIAL 229

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           G++  I+ ++P    I        +    G +     + +   +   I    L P L+  
Sbjct: 230 GIMLFILGLVPVAGVIISLIPLSIIAYSIGGLMYIVYILVIVMVLHAIEAYFLNPKLMSA 289

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP   TF  ++     +G+ GL IG  L   +  I 
Sbjct: 290 KTDLPIFYTFMVILFSEHFLGVWGLIIGIPLFMFLLDIL 328


>gi|111114828|ref|YP_709446.1| hypothetical protein BAPKO_0005 [Borrelia afzelii PKo]
 gi|110890102|gb|ABH01270.1| conserved hypothetical integral membrane protein [Borrelia afzelii
           PKo]
          Length = 362

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 108/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                       +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  RPWRIESVFYCIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KVDSSVINDINFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFGMKLDKAFKKPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V+T +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLTFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTAVQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLIAYPFTVIVKVIV 330


>gi|254172650|ref|ZP_04879325.1| membrane protein [Thermococcus sp. AM4]
 gi|214033579|gb|EEB74406.1| membrane protein [Thermococcus sp. AM4]
          Length = 329

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 55/351 (15%), Positives = 123/351 (35%), Gaps = 28/351 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M N   +   + + I+ +    +    +P++ AL + + ++PI+     K         +
Sbjct: 1   MRNETLVWAIVTVVILYLVWLVVSPVVSPIILALAVAYVTYPIHERLSPKIGRKKAAFLL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A ++V+    +    L+                       +      I   M  S  W 
Sbjct: 61  TAVIAVLSFLFLLGFVLW-----------------------INDVKYQIVRYMEISFNWL 97

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + ++          T +       I  +   +        L I  M+   +    +   I
Sbjct: 98  QSVTISSQRINEVLTAITEGVRSRIEAYVISYTYSIPKLALEIFVMLFVYYGTLVNAEEI 157

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
            ++L +L       +  ++       + +       +++ +G      +W   +      
Sbjct: 158 GRELYNLLPPQRKEFGIRLIEAARYTLDTLLKSWLTLSVLKGSATALGFWAFRIAPTSGA 217

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF--IVDKTLRPF 299
           +ALG++TA + ++P           +  L+  + +    LF   +I     + D  L P 
Sbjct: 218 IALGILTAFVELLPFLGGWLIWIPGVVYLVHTSHYVLAFLFAVYSIVFISPLPDFVLAPK 277

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +      L  L +  G+ GG+   GL+G+ IGPV + L+A + +E   A++
Sbjct: 278 MTLRRRGLNALISLLGIFGGLWAFGLVGIIIGPVSLGLLATVIEEWKKAME 328


>gi|54025251|ref|YP_119493.1| hypothetical protein nfa32820 [Nocardia farcinica IFM 10152]
 gi|54016759|dbj|BAD58129.1| hypothetical protein [Nocardia farcinica IFM 10152]
          Length = 373

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 91/308 (29%), Gaps = 21/308 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +        PV  AL++     PI      +    +     +A V+   + +  L+ L 
Sbjct: 47  GMKAFADILGPVFLALMLTIAVQPIQGF-ARRHGLPAWVGMALAVVTAYAIVLGLLVILV 105

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                   EL +     +     +   L+D   G          +   Q           
Sbjct: 106 ISTAQLATELPNYSGRFDDMLDGLRSVLADRGVGGEEIRTMLSDIDVRQ----------- 154

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                 +                ++ F++  L F   DG SI ++   L           
Sbjct: 155 ------VVSVLETTLSGLAGVLSALAFVLALLLFMAVDGLSIDRRARIL--TAERPAIAT 206

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             R      R   +  T+  +   +  G A W  GVP  +   V++ +   IP    +  
Sbjct: 207 ALRSFAIGTRRYLVVSTVFGLIVAVFDGLALWWLGVPLPLLWAVLSFVTNFIPNVGFVVG 266

Query: 263 TAVSIYLLIKGNIFN-ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                 L +          + L  ++  F++   ++P  VG  + L    TF  L+    
Sbjct: 267 LVPPALLALLAGGPALMIWVVLLYSVINFVIQSVIQPKYVGDAVGLSVTVTFLSLIFWTW 326

Query: 322 TMGLLGLF 329
            +G LG  
Sbjct: 327 VLGALGAL 334


>gi|227529755|ref|ZP_03959804.1| permease [Lactobacillus vaginalis ATCC 49540]
 gi|227350239|gb|EEJ40530.1| permease [Lactobacillus vaginalis ATCC 49540]
          Length = 351

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 44/341 (12%), Positives = 102/341 (29%), Gaps = 20/341 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFL 62
             +    + R++++ +I+  L+ L+     +L   I+ F              + S    
Sbjct: 7   RFIANVKLRRFVVLALIIFILWLLRPMMNLILFTFILTFIVVSWVRWLQRHVPKISIKLT 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V+  ++++      +       + ++ ++V+ V+        +                
Sbjct: 67  VVVTYIALIVAIYFGVTRYLPVLVNQVIKMVNSVIKFYSSRQAI---------------- 110

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +   +      +G+       +  G + + + LS I          +   
Sbjct: 111 -EIMHYVNHYISWGTIMSQMKHGVTLAVSTLTSIGTMTITFLLSFILSFFYTLELKQMNA 169

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                LDS     F        +               IAI   ++         +P   
Sbjct: 170 FSRTFLDSDFGWFFSDI-DYFGKKFVNTFGVVLEAQFFIAICNTVITSICLAFMHMPQIF 228

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           AL ++  I +++P    I     +S+     G I +   + +   +   +    L P  +
Sbjct: 229 ALALMVFIFSLVPVAGVIISLIPLSMVAYSVGGIRDVIYIIIMICVIHALEAYVLNPKFM 288

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +LP   TF  L+      G  GL +G  +   +  I 
Sbjct: 289 ASKTELPIFYTFIVLLVAEHFFGTWGLIVGVPIFTFLLDIL 329


>gi|67922154|ref|ZP_00515669.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
 gi|67856054|gb|EAM51298.1| Protein of unknown function UPF0118 [Crocosphaera watsonii WH 8501]
          Length = 357

 Score = 83.9 bits (206), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 106/316 (33%), Gaps = 6/316 (1%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P+  S  +       F  +   + ++ +     L L    + +++ L+ K+ L  +  
Sbjct: 47  LSPLVKSVEN-IGVPRWFSVISVYLMLILVLTGIGLLLGPTIVAQLQLLLEKLPLYIETL 105

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
               +    +                 Q   + S           +    S      +  
Sbjct: 106 NKQIQ----LFMTEKGFTEPDILDFINQQFNLQSVISWTFKSSQKLLIGVSDITRGIVGG 161

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L++   I+   +       +   + SL    +    K     V + +     G  +++ 
Sbjct: 162 VLNVFLAILLSGYMLSGSQKLINGIVSLFPVRWNDQLKAQVIPVSQRMGGYIQGRLLVSF 221

Query: 224 GEGLVLGSAYWLAGV-PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
             GL +       G+    + LG I  I  +IP   P+  +  ++ + +    +    + 
Sbjct: 222 ILGLAVSLGLKFLGIGEFALGLGTIAGITNLIPFFGPVLGSIPALIVAVAQGGWLFLWVL 281

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L   I   +    L P LVG  + +P L     ++ GV+ +G+LG  I P  +A   V+ 
Sbjct: 282 LLFLIIQNLETYVLDPLLVGSSVNVPPLYQLLAVLSGVQLLGILGALILPPWVAGAGVLL 341

Query: 343 KESIMAIKENKEKISS 358
           +   +  K   EK +S
Sbjct: 342 QNLYLIPKLEAEKENS 357


>gi|220906944|ref|YP_002482255.1| hypothetical protein Cyan7425_1524 [Cyanothece sp. PCC 7425]
 gi|219863555|gb|ACL43894.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 354

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 109/343 (31%), Gaps = 22/343 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q ++      II+  +            AL+I   + P+      ++   + +  ++  +
Sbjct: 8   QLLLGGACFVIIVAGMQAAASILNSFFLALLIAIATTPLLRWL-RRRGIPTGWALLLTVL 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+   I  L FL                  ++    +P +   I     +S  +     
Sbjct: 67  VVVATGITLLAFLGLSV--------------SELLQILPTYEDRIASLRDSSNAFLTSKG 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  +  ++      +  I +F  R G    +  L I  +   L         + + L
Sbjct: 113 INTAQALDLDSLQPGTLVKLIAQFLQRIGRAISESLLLIFIVAFMLLEGMGFPLKLKKGL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    +          + IRS     T       +V      L GV   +  GV+ 
Sbjct: 173 ------SPNSLLSNQFAAFAQRIRSYIWITTWTGGLTAIVDFLILSLLGVDLALLWGVLF 226

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  IP    +      ++L L++     +  +F    +   IVDK ++P  +   + L
Sbjct: 227 FLLNFIPAVGFLLAVIPPMFLGLLEFGWGKSLQIFFLCWLVDNIVDKGIKPRFMQQSLDL 286

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L     ++     +G LG  +   L  +I  +  ES    +
Sbjct: 287 SLLAIILSVIFWSWVLGPLGALLAIPLTMMIKTVILESSEQTR 329


>gi|109947348|ref|YP_664576.1| hypothetical protein Hac_0787 [Helicobacter acinonychis str.
           Sheeba]
 gi|109714569|emb|CAJ99577.1| amaA [Helicobacter acinonychis str. Sheeba]
          Length = 348

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 129/356 (36%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      LY  + F   VL A ++    + +             F +++  +
Sbjct: 4   QYFFWILFLIGFYWMLYLYQDFLMDVLIAGLLCVGLFQVKVFLDKHFFN--VFSSLLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL ++      +E  +   +
Sbjct: 62  VLASVLIVPLYFIIYKSSNIIFEI------NFEKLSALIKWLKEM-----ITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F  T+   ++ + +S  G   L      + ++  LFFF+  G       
Sbjct: 111 IHDGVSKFLENFNATSITGYLLKISSYVGKYGLKLITDALLILGLLFFFFYYGERFYHYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLQI-HQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWFLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  G++  A  + L+  + +  ++D  L+P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGHVNGAIFIVLYSILLIGGLIDSVLKPFLIVVVKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|119960782|ref|YP_949660.1| permease [Arthrobacter aurescens TC1]
 gi|119947641|gb|ABM06552.1| putative permease [Arthrobacter aurescens TC1]
          Length = 354

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 121/344 (35%), Gaps = 10/344 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  ++   +  ++  L+     + +AL I    +P+        + S     +   V 
Sbjct: 21  AALGVLVALALGSAVITLRYSLTLIFAALFISLGLYPLVRWLERW-KLSRGGAVLAVAVG 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + L +V + F+    + E   LV  +  +         +         A     + L  
Sbjct: 80  FLVLVVVLIRFIVPILVEEGAALVRVLPSSFDAVGEQEWFRDFNGSLGGALSPLLEWLET 139

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +   +            I   A + G   ++   ++IF+++   +F      +   L 
Sbjct: 140 SAADPNVWLA---------IGGGAVQVGYNVVNGTFAVIFVVVLTLYFVAGHEVMKSNLY 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L        +  IS  +   +     GM+I+A+   +       +AG      L V+  
Sbjct: 191 ALVPASRRESFADISETIIASVGKYLSGMSILALLNAIFTFIVLSVAGARYAAVLAVLAF 250

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
            + +IP       TA+   + +  +   A  +FL   + + +    L P +VG  I +P 
Sbjct: 251 PITLIPLVGSAISTAIITVVSLFTSPATALVVFLVMLVYMQVEAYVLTPRVVGKAISIPG 310

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G + G   +GLLG  I     A I +I K+ ++  +  K
Sbjct: 311 SLVLIGAMVGGTLLGLLGALIACPTTASILLIIKKVVIPQQNAK 354


>gi|166365377|ref|YP_001657650.1| hypothetical protein MAE_26360 [Microcystis aeruginosa NIES-843]
 gi|166087750|dbj|BAG02458.1| hypothetical protein MAE_26360 [Microcystis aeruginosa NIES-843]
          Length = 349

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 109/341 (31%), Gaps = 15/341 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++   L+ L+ ++     +L A+++        + +        ++  +I      
Sbjct: 7   LGLVLLVFCLLILWQIRQILLLLLMAILLAQILNLAVTWWQRH-HLKRSYALIITLFGFF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I   + +    + + ++L S +  A +        L D      AS L        Q
Sbjct: 66  IGIIGIFVGIIPALVQQFRQLFSLLPQAIERLWGQVHSLEDYLDPSLASVLPDFKTLLAQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         I+ I               LS++ ++        D  +  +    L
Sbjct: 126 ----------LQPLINQIAGRGLSIFYGTFGIILSLLLIVALGLMILADPAAYYRCFLRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               + +  + I     + +++   G+    +   L       L G+P   +  ++   +
Sbjct: 176 FPAFYRSRVRSILEQCDRDLKAWLKGIFCHMLIMTLGSCLGLSLIGIPLAFSQSILAGFL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR----PFLVGGPIKL 307
             IP   P+  T +   + +    +    + L  +    ++    R    P L    ++L
Sbjct: 236 TFIPNLGPVLSTILPFSIALLETPWQPWAVLLLYSSIYLLIQYFDRHSPLPILTVRSLRL 295

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               T    +      G LGLF+   L  +  +  KE+++ 
Sbjct: 296 LPAFTLLAQLFFASIFGFLGLFLAVPLALIGRIWLKEALIE 336


>gi|114766358|ref|ZP_01445340.1| hypothetical protein 1100011001348_R2601_23213 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541391|gb|EAU44438.1| hypothetical protein R2601_23213 [Roseovarius sp. HTCC2601]
          Length = 348

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 105/339 (30%), Gaps = 15/339 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q      ++ +I   L+  K    PVL A+I  +  + + +             +++  
Sbjct: 6   RQTTYLLALLIMIGYLLHIGKPVLLPVLIAVISVYILFDVTARLGQVPVIG-LLPSILRR 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+  F V L+ LF Y +    ++ + +     +   +   ++ + G            
Sbjct: 65  ILVLLAFTVVLVALFTYVLDTFTQVAAVLPSYKANLDSLMTHVAQLVGVDDEPSWAKLRS 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                L+I            FI         +     L +++              ++  
Sbjct: 125 MTFDRLEIQP----------FIGPVILSIRGLGGTLFLVVLYASFLTAERAGMARKLNLA 174

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L+   +         +   +   I       T++ I  G +      L G+   +   ++
Sbjct: 175 LEGNADAENR--TIALINRINTRIGDYLSVKTVVNIILGALSYGVMLLFGIDFALFWAIL 232

Query: 248 TAIMAMIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
            A++  IP    +      + L     G+   A+ + +        V   L P ++G   
Sbjct: 233 IALLNYIPYIGSLIGVIFPVLLSLAQFGSFTVASLVAVSLTAAQMFVAGYLEPRMLGRAF 292

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L      F L       GL G  +   L A + ++  E
Sbjct: 293 NLSPFVVLFALAFWSALWGLPGAVLAVPLTASLIIVMAE 331


>gi|307151710|ref|YP_003887094.1| hypothetical protein Cyan7822_1833 [Cyanothece sp. PCC 7822]
 gi|306981938|gb|ADN13819.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 362

 Score = 83.9 bits (206), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 101/335 (30%), Gaps = 22/335 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
             II+  +            A +I     P+    I K+         +A +  + + I 
Sbjct: 20  FVIIVAGMQAAASILNSFFLASLIAIAITPLLHWLIRKRLPG-----WLALLMTILIVIC 74

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             LFL  +  + + EL+  +         +            AS+          S  + 
Sbjct: 75  AGLFLVAFLGISISELIHILPTYEAKIQALKD----------ASKATLAARGIDTSQLLS 124

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
            E F     I  +  F            L +  +   L         I + + S G  L 
Sbjct: 125 LEIFSPARIIGTVAGFLRTITEALSTSLLLVFLIAFMLIEASGFSEKIQRNITSSGVLLA 184

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                       + IR+            G+V        G+      GV+  ++  IP 
Sbjct: 185 R------FNAFNRDIRNYVFITAWTGALTGVVDFFILLFLGIDLAALWGVLFFLLNFIPA 238

Query: 257 GAPISFT-AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              I       +  L++  I  A  +F +  +   IVDK ++P  +   + L  L     
Sbjct: 239 VGFILAVLPPMLLALLEFGIEKALLVFFFCWLIDNIVDKGIKPRYMQQGLDLSPLIIILS 298

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           ++     +G +G  +   L  ++  +  ES    +
Sbjct: 299 VIFWSWVLGGMGAILAVPLTLMVKKVILESSEDTR 333


>gi|229090936|ref|ZP_04222160.1| hypothetical protein bcere0021_17540 [Bacillus cereus Rock3-42]
 gi|228692337|gb|EEL46072.1| hypothetical protein bcere0021_17540 [Bacillus cereus Rock3-42]
          Length = 337

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/341 (14%), Positives = 112/341 (32%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERII- 166

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           + + +       +F            +          +IA+   ++   A  + G P  +
Sbjct: 167 TFTFKFKESKLKVFYEEIAYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|195941746|ref|ZP_03087128.1| hypothetical protein Bbur8_02554 [Borrelia burgdorferi 80a]
 gi|218249870|ref|YP_002374540.1| membrane protein [Borrelia burgdorferi ZS7]
 gi|221217432|ref|ZP_03588903.1| membrane protein [Borrelia burgdorferi 72a]
 gi|223889192|ref|ZP_03623781.1| membrane protein [Borrelia burgdorferi 64b]
 gi|226322079|ref|ZP_03797604.1| membrane protein [Borrelia burgdorferi Bol26]
 gi|218165058|gb|ACK75119.1| membrane protein [Borrelia burgdorferi ZS7]
 gi|221192710|gb|EEE18926.1| membrane protein [Borrelia burgdorferi 72a]
 gi|223885441|gb|EEF56542.1| membrane protein [Borrelia burgdorferi 64b]
 gi|226232669|gb|EEH31423.1| membrane protein [Borrelia burgdorferi Bol26]
 gi|312149449|gb|ADQ29520.1| membrane protein [Borrelia burgdorferi N40]
          Length = 362

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 109/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +           +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  KPWRVESVFYCIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFEMKLDKAFKKPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V++ +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLSFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLISYPFTVIVKVIV 330


>gi|260429245|ref|ZP_05783222.1| conserved hypothetical protein [Citreicella sp. SE45]
 gi|260419868|gb|EEX13121.1| conserved hypothetical protein [Citreicella sp. SE45]
          Length = 350

 Score = 83.5 bits (205), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 107/346 (30%), Gaps = 14/346 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  M    +L++L   +  FAP++ A+++G    P+      +       +A+   +
Sbjct: 13  RVSVAIMAAGTLLLALKVAEDIFAPLMLAIVVGVIFAPLADRLE-RLGLPRGVVALGIII 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +          +  Y  L +  + S      +        +  I       E       
Sbjct: 72  GIFFAIAALAFLVEPYITLVIDRIPSIKFELGKLMFEYRGLIQGIGEVSGEIED------ 125

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                  L     +++    +P       +  +     ++F+    FF            
Sbjct: 126 ------ALGAAVAESSDATGVPTMKDALFLAPVILAQVLVFLGGLFFFLLTRNDIYRWMA 179

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +G         +      K++   F  ++++  G GL +G+A  L G+P  V  G+  
Sbjct: 180 HRIGSGPETPMMLERFCAAEKMVSRYFAAISVVNAGLGLAVGAALMLIGLPGAVVWGIAA 239

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +    P +     +   ++  +                   + + P LVG  +++
Sbjct: 240 MLLNFVLYLGPAALAGGLLLAGIVNFDGLMTFAPMAIYLGLNMTEAQFVTPSLVGRHVQI 299

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                F  L+  +   G LG  +   +  +   ++         N 
Sbjct: 300 NPFLIFVALLFWLWFWGPLGGIVAIPVTLITLRLFDILGDRPSRNP 345


>gi|108805540|ref|YP_645477.1| hypothetical protein Rxyl_2750 [Rubrobacter xylanophilus DSM 9941]
 gi|108766783|gb|ABG05665.1| protein of unknown function UPF0118 [Rubrobacter xylanophilus DSM
           9941]
          Length = 344

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 83/294 (28%), Gaps = 16/294 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y L      V  ++++      +    + +         ++       L  +  L L   
Sbjct: 31  YALLPVLELVAISVLLALVLRTVI-WGMGRVGVPGWAAVLLLLSLFGLLGALFWLVLLPN 89

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + E++ L S++         + R L    G +                           
Sbjct: 90  IVRELQVLASQLPGYLDALAGLTRRLHGSLGIVPDLSEL---------------AGRARG 134

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +                  + ++    +  RD   +      L           + 
Sbjct: 135 LASRLVGALPELAGGVARAAADAVVVVFLALYLARDPGPVVSGFLRLFPEEERGRVSALL 194

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +   +R   LG  + A+  G   G+  W  G+P  V  G++ A++  +P    I    
Sbjct: 195 GRLEVRLRGWMLGAGLAALVVGAGAGAGLWALGIPLPVTFGLLAALLNFVPYFGSIVAAV 254

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           + + + +  +   A  +     +   I    ++P ++G  + L  +      + 
Sbjct: 255 LPVLVALSISPLKALLVAALYVVLNQIDGNMVQPLVMGREVSLHPVWILVSFLA 308


>gi|229155534|ref|ZP_04283642.1| UPF0118 membrane protein [Bacillus cereus ATCC 4342]
 gi|228627852|gb|EEK84571.1| UPF0118 membrane protein [Bacillus cereus ATCC 4342]
          Length = 337

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 51/341 (14%), Positives = 112/341 (32%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K   +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERITT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILMFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|269123406|ref|YP_003305983.1| sporulation integral membrane protein YtvI [Streptobacillus
           moniliformis DSM 12112]
 gi|268314732|gb|ACZ01106.1| sporulation integral membrane protein YtvI [Streptobacillus
           moniliformis DSM 12112]
          Length = 367

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/343 (12%), Positives = 111/343 (32%), Gaps = 7/343 (2%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + + +I +  +    +  P + A I+   +    +  ++K   S+    +I  +  
Sbjct: 15  LIYMITVILIALIAFKASLYLLPFVIAFIVVTITRGPVNFLVNKFNFSNRMSNIIVILLF 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             +  V L+ L      E+  L + ++        +   L +     +   +       P
Sbjct: 75  YLIIPVILILLLIRSYNEIYNLSNWLIKNANAFKNIGFELFEKY--NFLEGILPSVAIIP 132

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               I       TN    I  +     +      + +I  I A F    D  ++    + 
Sbjct: 133 IKNFITMLLGKLTNLGFLIANYVLSLTLKLPVLFVHVIITITATFLMAGDIETVHNFFEK 192

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-----PSHVALG 245
               ++   +++I   + +V         I+       L     +  +            
Sbjct: 193 QFPKVWLEKFRQIKVNIVEVAYQYLRAQLILVSLCFTELIIGLSIINIFVKPISYVFLTS 252

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++ A+   +P                    +      L+  + +  +  T  P ++   +
Sbjct: 253 MLIALFDALPIFGAGGILLPWAAYCFLTGNYLLGISILFLYVFIVTMRMTFEPRILSKSL 312

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            +  L +   L  G +  G++G   GP+++ ++ +++KE I  
Sbjct: 313 SINPLLSLISLFVGFKVFGVVGFLFGPIILTIMIILFKEEINK 355


>gi|224534934|ref|ZP_03675503.1| membrane protein [Borrelia spielmanii A14S]
 gi|224513874|gb|EEF84199.1| membrane protein [Borrelia spielmanii A14S]
          Length = 362

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/332 (13%), Positives = 108/332 (32%), Gaps = 27/332 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K         +    +  L
Sbjct: 23  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK-----FLIVFIIFFL 77

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                  +F +    +  L+ ++         + + +                       
Sbjct: 78  LFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY------------------- 118

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 119 KVDSSVINDINFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIHVFGMKLDKAFK 178

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V+T +   
Sbjct: 179 KPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLTFVFNF 238

Query: 254 IPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    I       ++  +    N+     +FL+      ++   L P + G  + +   
Sbjct: 239 IPSIGSILAVFFIVITSLIQFYPNLNIVLYIFLYNTSVQMLIGNILEPKMQGKRLDISPF 298

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                L       G++GL I      ++ VI 
Sbjct: 299 LLLCFLFFWGWLWGIVGLLIAYPFTVIVKVIV 330


>gi|149204834|ref|ZP_01881796.1| hypothetical protein RTM1035_03023 [Roseovarius sp. TM1035]
 gi|149141704|gb|EDM29759.1| hypothetical protein RTM1035_03023 [Roseovarius sp. TM1035]
          Length = 338

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 109/344 (31%), Gaps = 11/344 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            +  + + +   +L      FAP+  A++ G    P+   F  +   S+   A    +  
Sbjct: 2   AVIVIALILSFAALKIGGDIFAPMTLAIVTGVMLAPVTDVFE-RIGFSTGLAASTVLILG 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +    +  +           ++  ++         +    S++  G+             
Sbjct: 61  VSAIGILAILAEPVIW----QIAEELPRIQYELRSIIAEFSNLIRGLQEINR-----EVE 111

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +L               +P   S   M  L    +++F     FF        +     
Sbjct: 112 AALGAAPTPAKDAGEGGSLPSITSALFMAPLVLAQALVFCGTLFFFLLTRKGMYAWLSLW 171

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +G     A   +      +++   FL ++ I  G G  LG A  L  +P      ++ A+
Sbjct: 172 IGTPDDTADILRRFTNAERLVARYFLAISSINAGLGAALGGALLLINLPGPFVWAMVAAL 231

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +    P++ TA  +   ++  +                +  +   P LVG  I +  
Sbjct: 232 LNFVLYVGPMTVTAGLLVAGIVAFDDLMVLAPPAIFLALNMLEAQFATPALVGRHISVNP 291

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           L  F  LV  +   G +G  I   ++ +   +     +  + +K
Sbjct: 292 LLIFVSLVFWLWLWGPIGGIIAIPVLVIALALLDIFAVDGEPDK 335


>gi|324497297|gb|ADY39451.1| putative inner membrane protein [bacterium enrichment culture clone
           P43-9H:P46-4G]
          Length = 261

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 5/233 (2%)

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           G      W   L    S  +            +    A+  G     + +    M++   
Sbjct: 10  GSKLYSGWHSLLEMGGSALMAKIRPYIGTTTTWFVGQAAHIGR----FMMHCTLMLLFSA 65

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
             Y  G  ++  +      L          +  + +R+  LG+ + A+ + ++ G    +
Sbjct: 66  LLYWRGEQVALGVRHFATRLAGKRGDAAVLLAAQAVRAVALGVVVTALVQAVLGGIGLAI 125

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
           +GVP      V+  +  +   G  +      I+L   G+    T L +W  +    +D  
Sbjct: 126 SGVPYATVFTVVMLMTCLAQLGPLLVLVPSIIWLYWTGDTTWGTVLLVWSCVV-GTMDNV 184

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 185 IRPILIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHE 237


>gi|318041303|ref|ZP_07973259.1| permease [Synechococcus sp. CB0101]
          Length = 333

 Score = 83.5 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/324 (9%), Positives = 101/324 (31%), Gaps = 17/324 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  +G++  + + ++ +  + L+     +  A+++        S        +      +
Sbjct: 1   MTLRGLIGLLALVVLGLLAWELRWVLLVLFGAVVLAVALDVPVSWLRRFTPMNRPQALTV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++         L    + ++++    V         +   ++ +            
Sbjct: 61  VVLLLLLGGWQLGEVLLPELIEQVQQFTQLVPALLNRVGELLGGVAML------------ 108

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                +SL+         + +  +      F     +  + ++ M++       D  S  
Sbjct: 109 -----ESLEGRVAELATFDKLQPLGGQLLGFAGGAANGTIQLLLMVLLALLLVLDPRSHQ 163

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +     +     ++     + +     GMTI A    L+  +      VP  +  G
Sbjct: 164 RLVVAATPAHYRGMAGELLSACRQALGGWLAGMTISASAVFLLTWAGLAALKVPLALLSG 223

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++  +P   P   T + + + +  +   A  + +   +        L P L+   +
Sbjct: 224 LVCGLLTFVPTIGPTVATLLPLAVALLVSPALALQVLILRLVLQNAEAFLLTPLLLSRTV 283

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLF 329
            L         +     +GL G+ 
Sbjct: 284 NLLPTVALMAQLSLGALLGLPGVL 307


>gi|225552033|ref|ZP_03772973.1| membrane protein [Borrelia sp. SV1]
 gi|225371031|gb|EEH00461.1| membrane protein [Borrelia sp. SV1]
          Length = 362

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 43/343 (12%), Positives = 109/343 (31%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +           +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  KPWRVESVFYCIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      K+ S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFEMKLDKAFKKPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V++ +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLSFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLISYPFTVIVKVIV 330


>gi|110801515|ref|YP_699897.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           SM101]
 gi|110682016|gb|ABG85386.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           SM101]
          Length = 354

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 102/329 (31%), Gaps = 6/329 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + +  + +++  +I  + +    +  P L A I            I K + +    + 
Sbjct: 6   IKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNVGLASF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----HGIPVPRWLSDIPGGMWAS 120
           I+T     + ++           E   L + +                 L +     +  
Sbjct: 66  ISTFIFFLIIVILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIEVNFID 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 + +         T L  +    + +             + +IF +I+ +F  ++
Sbjct: 126 NAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVISTYFLSKE 185

Query: 181 GFSISQQ--LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +I+    L +     +      I   + K+  +       +     ++    +    +
Sbjct: 186 LNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGFSFLNI 245

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L VI A++ ++P           I++        +        I +F++ + L P
Sbjct: 246 KYALLLSVIAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILYIFIFLLRQFLEP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   + +  L     +  G+   GLLG
Sbjct: 306 KLMASTLGIHPLLILICIFIGLELNGLLG 334


>gi|312869643|ref|ZP_07729792.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
 gi|311094840|gb|EFQ53135.1| putative membrane protein [Lactobacillus oris PB013-T2-3]
          Length = 347

 Score = 83.1 bits (204), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/334 (13%), Positives = 105/334 (31%), Gaps = 20/334 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVS 69
           + R+ ++ +I+ +L+ ++     +L   I+ +              + S   + +I    
Sbjct: 14  VRRFAVLAVIIFALWMMRSMMNMILFTFILTYIVVNWVHLVRRWLPKLSPAVVVIITYAL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L    +       + ++ ++V+ V+                      ++    +   
Sbjct: 74  LVLLLYFGITQYLPVLVRQIVKMVNSVLKFYST-----------------NDATAFYHYV 116

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +   +      +G+       +  G++   + LS+I          +        LD
Sbjct: 117 NHYISTGTIMTQLRHGLTIAVSTITSVGVVAFTFLLSLILSFFYTLELPQMESFSRLFLD 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S  +  F        +               IAI   ++     +   +P   AL ++  
Sbjct: 177 SKFDWFFQDI-AYFGKKFTNTFGVVLEAQFFIAICNTVITTICLFFMKMPQIFALALVVF 235

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + +++P    I     +SI     G I +   + +   +        L P  +     LP
Sbjct: 236 VFSLVPVAGVIISTIPLSIVAYSVGGIRDVIYIIIMIIVIHAFEAYVLNPKFMSSQTDLP 295

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  L+ G    G  GL +G  +   +  I 
Sbjct: 296 IFYTFIVLLIGEHFWGTWGLIVGVPIFTFLLDIL 329


>gi|226314195|ref|YP_002774091.1| hypothetical protein BBR47_46100 [Brevibacillus brevis NBRC 100599]
 gi|226097145|dbj|BAH45587.1| conserved hypothetical membrane protein [Brevibacillus brevis NBRC
           100599]
          Length = 353

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 49/350 (14%), Positives = 101/350 (28%), Gaps = 27/350 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKE----ESSTFLAVIA 66
           + R+ I+ +  + LY L      VL   ++ +    ++                 + +  
Sbjct: 13  VRRFGILALFCLLLYSLGSMLNMVLLTFLVTYLMNRLHQYLTRVTHKVVPIHPKLILIFL 72

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + +    +V  +      + +  +L   +                            + 
Sbjct: 73  YMLLTFFLVVGGMKAIPALIHQTGQLFHSIEEVYHQ------------------NQNNEF 114

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
             +  S+    +      G           G       +  +F ++              
Sbjct: 115 APYLMSVVGKLDMKGIVQGSLDFLAVVRNVGFNVFLAIILSLFFLLGKDNVVTFTAQFRT 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              S   +    + +K      KVI +      +IA+          W+ G P+ + L +
Sbjct: 175 SKLSWLYNEIAYFSQKFILTFGKVIET----QLLIALFNTTFTVIGLWIMGFPNLLGLAI 230

Query: 247 ITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  I+ +IP     IS   +S      G I     L ++  +   +    L P L+    
Sbjct: 231 MVFILGLIPVAGVAISLIPLSAIAFSVGGIPTVVYLLIFIMVVHALEAYVLNPRLMATKT 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            LP   TF  L+      G+ GL +G      +  I +   M     K K
Sbjct: 291 HLPIFYTFIVLIFSEHFFGVWGLIVGIPSFVFLLDILEVKKMEQPPTKNK 340


>gi|57242122|ref|ZP_00370062.1| acid membrane antigen A Cj1363 [Campylobacter upsaliensis RM3195]
 gi|57017314|gb|EAL54095.1| acid membrane antigen A Cj1363 [Campylobacter upsaliensis RM3195]
          Length = 347

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/350 (16%), Positives = 126/350 (36%), Gaps = 21/350 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +  +   I+ I+ + LY  K F   +  A ++   +  +++ F+S  ++     + 
Sbjct: 1   MKSGKIFLICFILVILSLLLYLFKSFLLVMAIAALMAVATSNLHAKFLSLTKQRKLLAST 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     ++      I    +            L +
Sbjct: 61  LTTSFMILLFFAPFIYTSIELAKALKNFDINLITQTLDYIKHYEF-----------SLPS 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +K         +       +AS F      + + +  + +  FF    G  +
Sbjct: 110 SLEFLEPKIKEFIAGLDLNSLYRQALTYASSFTKSGAKFLMDMALICVFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L S+   +      +I   V  V+      M I+AI +G + G   +  G    +  
Sbjct: 170 VIYLKSIVP-INKTELDEILGEVGNVMAVVLYSMIIVAIFQGALFGIIMFFYGYDGLLMG 228

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI-ELFIVDKTLRP----- 298
            +      +   G  + +  VS+Y    GN+ +A  +F++  I   FI D  ++P     
Sbjct: 229 VIFAVSSLIPAVGGALVYVPVSLYTFASGNLGSAIVIFIYSFIMISFIADTLIKPLIIKW 288

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               LV  P  +  L  F  ++ G+ + G  G+ +GP ++       +  
Sbjct: 289 INEKLVKTPTNINELLIFLAMIAGISSFGFWGIILGPAILTFFISTIRFY 338


>gi|322368907|ref|ZP_08043474.1| Htr-like protein [Haladaptatus paucihalophilus DX253]
 gi|320551638|gb|EFW93285.1| Htr-like protein [Haladaptatus paucihalophilus DX253]
          Length = 395

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 110/348 (31%), Gaps = 36/348 (10%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + L +L+ +  F    +  L + + + P+Y     +    S   AV   V  +   ++  
Sbjct: 2   LGLAALFVIYSFIGTFVFGLFLYYATRPVYRRLQRRIRPRSLAAAVALLVLALPAILLVA 61

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             L                    H +      +++       + +       Q+ + L E
Sbjct: 62  YTLIIAF----------------HELTTVARTANLGALPQPVQQYGDISRLAQNPEQLLE 105

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
               T  I+       ++     +  L +  MI   F+  RD   +S+            
Sbjct: 106 NADNTKLIEQAFGSTYKYLAFVGNAALHLFVMIAIAFYLLRDDHKLSRWFHRTF-ADTGG 164

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--------GVPSHVALGVITAI 250
             +     V     S F G  + A   G +   +Y L         G+P    +G++T +
Sbjct: 165 VLEAYVHRVDSDFNSIFFGNILNAFMTGTIGAISYNLLDMAAPPGIGIPYPTVVGLLTGV 224

Query: 251 MAMIPGGAPISFTAVSIYLLIKGN---------IFNATCLFLWGAIELFIVDKTLRPFLV 301
            ++IP             ++              F A    +   I   I D  LRP++ 
Sbjct: 225 ASLIPVVGMKLVYFPVTGVIGAEALMARDPGLLWFPAVFALVSFVIVDTIPDLVLRPYVS 284

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           G    L         + G    G  G+F+GP+++ L+    K  +  +
Sbjct: 285 GR--NLHVGMVMLAYIFGPLLFGWYGIFLGPMILVLVVHFVKIVLPEL 330


>gi|194431908|ref|ZP_03064198.1| inner membrane protein YdgG [Shigella dysenteriae 1012]
 gi|194419816|gb|EDX35895.1| inner membrane protein YdgG [Shigella dysenteriae 1012]
          Length = 294

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 82/292 (28%), Gaps = 21/292 (7%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          I    ++   ++ L +L        + L             +   L  +
Sbjct: 6   RWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRV 65

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   +L      +     + +     +N +  I         + L+           
Sbjct: 66  GIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---------- 115

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +   +     P       +     +    +  T I+I  GLV  +  
Sbjct: 116 --------PQLPGKFQQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAML 165

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               V      G++   +  IP     ++       +L+    + A  +     +   + 
Sbjct: 166 AALDVRFAFVSGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVF 225

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L P ++G  + L  L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 226 GNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 277


>gi|315618787|gb|EFU99370.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 294

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 82/292 (28%), Gaps = 21/292 (7%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          I    ++   ++ L +L        + L             +   L  +
Sbjct: 6   RWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRV 65

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   +L      +     + +     +N +  I         + L+           
Sbjct: 66  GIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---------- 115

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +   +     P       +     +    +  T I+I  GLV  +  
Sbjct: 116 --------PQLPGKFQQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAML 165

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               V      G++   +  IP     ++       +L+    + A  +     +   + 
Sbjct: 166 AALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVF 225

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L P ++G  + L  L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 226 GNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 277


>gi|307637250|gb|ADN79700.1| acid membrane antigen A [Helicobacter pylori 908]
 gi|325995842|gb|ADZ51247.1| Acid membrane antigen A [Helicobacter pylori 2018]
 gi|325997436|gb|ADZ49644.1| putative membrane protein [Helicobacter pylori 2017]
          Length = 349

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 129/356 (36%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +   S+   + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y G   + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSAASITGYLLKVSSYIGKYSLKLVTDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 290 IFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|126736114|ref|ZP_01751857.1| hypothetical protein RCCS2_10265 [Roseobacter sp. CCS2]
 gi|126714280|gb|EBA11148.1| hypothetical protein RCCS2_10265 [Roseobacter sp. CCS2]
          Length = 343

 Score = 83.1 bits (204), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 116/333 (34%), Gaps = 19/333 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +   + L +L+  +   AP+L+A+++G    P+   +   +  ++   A+   +++ 
Sbjct: 10  LVALTFVVALAALHITRNLMAPILAAILLGIVMTPLSDLWDRLRVPAAVAAALSVLLALS 69

Query: 72  CLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + I+ LL        + +   +  ++         + R L  I   M A+      +  
Sbjct: 70  AILILLLLIEPYITQAISQGPVIREELRATVDEMRRILRGLEQISEDMAAAIEPNDAVVE 129

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             + +                   +        +    +     L+FF     ++   L 
Sbjct: 130 NATDEA------------VALPSLTDALFYAPQFLAQFLIFTGTLYFFLLARDAVYDWLS 177

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S   +L   +     +   K +    L ++ I +  G ++     + GVPS +  G++  
Sbjct: 178 SNISYLTDMH----LKRAAKQVSRYVLTISTINLALGALVAVVMQIIGVPSPMIWGLLAF 233

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  I    P    A+   + I      A+ L          I  + + P LVG  + + 
Sbjct: 234 LLNFIMYLGPALLIAMLTVMGIVVFDGAASFLPAAVYIAMNAIEAQFVTPTLVGKSLSVN 293

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L  F  LV  +   G +G  I   L+  I  +
Sbjct: 294 PLLVFLSLVFWLWLWGPIGGIIAIPLLIWILTV 326


>gi|218689547|ref|YP_002397759.1| hypothetical protein ECED1_1800 [Escherichia coli ED1a]
 gi|218427111|emb|CAR07993.2| conserved hypothetical protein; putative inner membrane protein
           [Escherichia coli ED1a]
          Length = 294

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/292 (10%), Positives = 81/292 (27%), Gaps = 21/292 (7%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          I    ++   ++ L +L        + L             +   L  +
Sbjct: 6   RWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRV 65

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   +L      +     + +     +N +  I         + L+           
Sbjct: 66  GIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---------- 115

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +   +     P       +     +    +  T I+I  G V  +  
Sbjct: 116 --------PQLPGKFQQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGQVAWAML 165

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               V      G++   +  IP     ++       +L+    + A  +     +   + 
Sbjct: 166 AALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVF 225

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L P ++G  + L  L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 226 GNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 277


>gi|16077515|ref|NP_388329.1| integral inner membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221308268|ref|ZP_03590115.1| hypothetical protein Bsubs1_02533 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312590|ref|ZP_03594395.1| hypothetical protein BsubsN3_02509 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317514|ref|ZP_03598808.1| hypothetical protein BsubsJ_02473 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321790|ref|ZP_03603084.1| hypothetical protein BsubsS_02544 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|8928505|sp|P96604|YDBI_BACSU RecName: Full=UPF0118 membrane protein ydbI
 gi|1881258|dbj|BAA19285.1| ydbI [Bacillus subtilis]
 gi|2632748|emb|CAB12255.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 350

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLAVI 65
           G+ R+ I  ++   LY  K     +L   I  F    +              S   +   
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFVSQFFRVSQRVVITF 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  L  V     +     ++++LV ++     H   +P                  
Sbjct: 72  LYMLLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPDSIP-----------------F 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                     ++ +     G + +  + +      L   +++I  +  LF   R    ++
Sbjct: 115 FDEITSVFGDINISSYVKEGFNVVYTYLADISTFGLQVVMALILSMFFLFEKKRLSEFMA 174

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   S     +            +          IIA+   ++   A W+   P    L 
Sbjct: 175 KFKTSKLRVFYEEI-AFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLS 233

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++   + +IP     IS   +SI     G       + L       I    L P L+   
Sbjct: 234 IMVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAK 293

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +LP   TF  L+      G+ GL IG  +   +  I   +    +    + +S+
Sbjct: 294 TELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEDRSKGPRENSD 348


>gi|254501601|ref|ZP_05113752.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
 gi|222437672|gb|EEE44351.1| conserved domain protein, putative [Labrenzia alexandrii DFL-11]
          Length = 330

 Score = 83.1 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 111/335 (33%), Gaps = 15/335 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    ++ +L   K   APV  ++++G    P           S    A++  + ++
Sbjct: 3   LVILACLALVFALDVGKVILAPVCLSIVVGSLFGPAADRLGRLGIPSWVSAALMVVLFIL 62

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +      F+       + + + K+ L              +      S L  +  +   
Sbjct: 63  LITTAGAAFMVP-----LSDWLDKLPLIWAKLQSQLVSWQGLFAS--ISSLQEELRNAMG 115

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
               +  +  +T+ ++ +  FA  F    + +  S+ F      F           +D  
Sbjct: 116 QSGNMQVSVDETSPVESVFYFAPTFMAQIILFLASLYF------FVLTRPRVFRSTVDWS 169

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                        + + K + +  L +T + +G    + +A WL GVPS +  GV+  ++
Sbjct: 170 TPATKRYRMAIAFQRIEKRLSTYLLSITCVNVGLAAAVSAALWLIGVPSPILWGVLAGVL 229

Query: 252 AMIPGGAPISFTAVS--IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
             +    P     +   + L I  +I       L   +      + + P ++G    L  
Sbjct: 230 NYVVYIGPAIMVLIMTGVGLSIGNSIPEILLPPLVYLLLNLFEAQFVTPTVLGRTTTLNP 289

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              F  +   +   G +G FI    +     +++ 
Sbjct: 290 FLVFLTIAFWIWLWGPIGAFIAVPALLAGVTLYEI 324


>gi|33866814|ref|NP_898373.1| hypothetical protein SYNW2284 [Synechococcus sp. WH 8102]
 gi|33639415|emb|CAE08799.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 358

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 94/306 (30%), Gaps = 13/306 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
            F++   L     F    L+A +I F         + +   S      +  +  + L ++
Sbjct: 21  AFVLKRVLVQFAPFPGLFLTAALIAFLLDLPCRWLMGR-GLSRIGSITMVMLLTVGLLVL 79

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
             + L    + ++ +L+S                            +    S   S    
Sbjct: 80  AAVELVPLLIAQLSQLISASPALLAAAEAWINQGQSWAINHGLPADFADLSSDLISQI-- 137

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                 +       +         +   ++++ +++   F      SI+  L       +
Sbjct: 138 ------SRVATQFSQRLLGILGATVGTTINVLIILVLAVFLLLGADSIAAGLLEWLPLPW 191

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
                 +   + +  R  F G  ++A+         + +  +P  V   V+     +IP 
Sbjct: 192 RGL---VGSTLERTFRGYFAGQVVLALILSAGQLVVFTVLEIPYGVLFAVLIGFTTLIPY 248

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
            + ++   VS  +L   +      L +   +   IVD+ ++P L+G  + L        L
Sbjct: 249 ASALTIVFVSA-VLGVQDPRTGIELLVAAIVVGQIVDQVIQPRLMGSIVGLQPAWLLIAL 307

Query: 317 VGGVRT 322
             G R 
Sbjct: 308 PIGSRL 313


>gi|293400883|ref|ZP_06645028.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305909|gb|EFE47153.1| conserved hypothetical protein [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 375

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 107/315 (33%), Gaps = 11/315 (3%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                  P L    + +   P+     +K   +  F  ++  + ++ + ++ ++ L    
Sbjct: 44  IAYSVLQPFLYGFALAYIMNPLVLYMKAK-GLNKNFSILLLWIIILVILVILIVLLLPML 102

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
             ++ E +S ++   Q      + + ++      + L    +   ++             
Sbjct: 103 YAKINEFISSLIQGVQWISFKIKEIGNLKDFSLVNSLTDNIIKLLEAYDDWMPG------ 156

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +      +    LDY  +I+F II   +   D   +   +     HLF         
Sbjct: 157 ---LVSSLPSWMSTILDYVTNILFTIIIAIYMLFDFDRMKGYVKKAF-HLFIPNSDIYLH 212

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +      M ++ +   +   + Y+  G    + +G+I+A+ A+IP        A+
Sbjct: 213 EIDENVTVYLKSMALLILIRFVEYCAFYYCVGHHDWLIIGIISALGAVIPYIGGTVANAI 272

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I   +     N   L +   +   + +  + P +      L  L T F +  G     +
Sbjct: 273 GILTGLTLPSSNLAALIIGIIVLSNVDNYVISPIVHEKRSALGPLITLFAVFAGGVIGNV 332

Query: 326 LGLFIGPVLMALIAV 340
           +G+ +   L+  I  
Sbjct: 333 VGIMVSVPLVIAIKT 347


>gi|213616436|ref|ZP_03372262.1| hypothetical protein SentesTyp_19021 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 298

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 88/287 (30%), Gaps = 17/287 (5%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
                     +A   V+ + ++ L  L       + E ++ +   ++        L ++ 
Sbjct: 2   WFIRRGVKRPLAITIVVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELM 61

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
             +       + L    S KI+  T     G+           M  +     +  +   L
Sbjct: 62  PFLNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVFMLFEVRHVPYKL 121

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
            F   +       L                    K +       T++++  G ++     
Sbjct: 122 RFALNNPQIHIAGLHRAL----------------KGVSHYLALKTLLSLWTGAIIWLGLA 165

Query: 235 LAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           L  +   +  GV+  ++  +P     IS     I  L+    +    +     +   ++ 
Sbjct: 166 LMDIQFALMWGVLAFLLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIG 225

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             + P ++G  + +  L  F  L+     +G +G+ +   L ++  +
Sbjct: 226 NIMEPRMMGHRLGMSTLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 272


>gi|157164430|ref|YP_001467226.1| hypothetical protein CCC13826_0381 [Campylobacter concisus 13826]
 gi|112802037|gb|EAT99381.1| acid membrane antigen A [Campylobacter concisus 13826]
          Length = 346

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 118/356 (33%), Gaps = 21/356 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N +          + + +Y  K F   +  A ++      +  +F++  +   T  + +
Sbjct: 1   MNNRLFFGIFAFCALALVVYLFKPFLLDIFIAALLAVAVANVQIAFLALTKNRKTLSSGL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T +++CLFI PLL+                V      I    +            L   
Sbjct: 61  TTFALLCLFIAPLLYAVVEIAKYAAGFDINNVTKTIEFIKNYDF-----------SLPES 109

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  +K              +    +  G + L + + +I +++  FF    G  + 
Sbjct: 110 INFLEPKIKEFIGGLDIKMLFSQVAANLANLGKLSLKFGVDMIIILVFFFFCNLYGNELI 169

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L      L     + I   V  V+   F       I +G +        G    +   
Sbjct: 170 NYLKEALP-LKKEDTESILSEVGNVMGVVFYSTIANMIIQGFLFAIITSFYGYDGVLTGI 228

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRP------ 298
             +    +   G  +++  +SIY    GN   A  + L+  I + +  D  L+P      
Sbjct: 229 FFSFASLIPVVGGFLAWAPISIYEFANGNTAAAITITLYTIIVISLGADTLLKPPIIKFI 288

Query: 299 --FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              LV  P K+  L  FF ++ G+ T G  G+ +GP ++       K   +  + N
Sbjct: 289 NSKLVKIPTKINELLIFFAMIAGISTFGFWGVILGPAIVTFFISTIKLYTLLRERN 344


>gi|88808465|ref|ZP_01123975.1| hypothetical protein WH7805_02207 [Synechococcus sp. WH 7805]
 gi|88787453|gb|EAR18610.1| hypothetical protein WH7805_02207 [Synechococcus sp. WH 7805]
          Length = 333

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/324 (8%), Positives = 96/324 (29%), Gaps = 17/324 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +NP+ ++  + + ++ + ++ L+     +  A+++           I +         ++
Sbjct: 1   MNPRNLLAALTLVVLALLVWQLRWVLLVLFGAVVLAVALDVPVHMLIKRFSMQRPLALLL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +    +V +  L    + +  +L S +         +      +     +      
Sbjct: 61  VVVVLAIGGMVVMRLLLPELITQFGQLTSLLPSLLGKVRTILSSQPLLAELNQSIPDQFS 120

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                               +  +            +  + ++ M +       D  +  
Sbjct: 121 WDK-----------------VQPVGFQLLGVAGGAANGFIQVLLMSLLAVLLALDPEAHR 163

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +           ++       +     GMT+ A    L+  +      VP  +   
Sbjct: 164 RMVIAATPRPARDAMAEVLNRCRAALGGWLAGMTLSATAVFLLTWAGLAALQVPLALLSA 223

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++  +P   P + T + + + +  +      + +   +   +    L P L+   +
Sbjct: 224 LVCGVLTFVPTIGPTAATVLPLGIALLISPTLMVQVLVLRLVIQNLEAFLLTPILLRRTV 283

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLF 329
            L         +     +GL G+ 
Sbjct: 284 NLLPTVALTSQLSLGALLGLPGVL 307


>gi|315931421|gb|EFV10389.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           327]
          Length = 347

 Score = 82.7 bits (203), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 115/323 (35%), Gaps = 21/323 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+           +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFTSN 257

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 258 NLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 317

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
             G+ +GP ++       +  ++
Sbjct: 318 FWGIILGPAILTFFVSTLRMYVI 340


>gi|309804578|ref|ZP_07698643.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165970|gb|EFO68188.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
          Length = 181

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 72/176 (40%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
             +DG  I+  L S         + K+   +   + S   G  I+A   G++    Y   
Sbjct: 1   MLKDGKKINPYLTSFMPPRLQNVFSKLLHDMNIAVSSYVRGQLIVAFWVGVMFAVGYTTI 60

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           G+   + L ++ A + +IP    +     +I + I  +      +F+   IE  I  + +
Sbjct: 61  GLKYGLTLAILAACLNLIPYFGTLISLIPAIIIGILDSPVMLLKIFVVFFIEQLIEGRFI 120

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            P ++G  +K+  + T   L+G     GLLG+     + A I +I  +     ++N
Sbjct: 121 SPLVMGSKMKMNPVTTILLLIGANSVAGLLGVIFAIPIYAGIKIIVVQVFDYYRKN 176


>gi|229020662|ref|ZP_04177393.1| hypothetical protein bcere0030_51380 [Bacillus cereus AH1273]
 gi|229026874|ref|ZP_04183199.1| hypothetical protein bcere0029_51400 [Bacillus cereus AH1272]
 gi|228734426|gb|EEL85095.1| hypothetical protein bcere0029_51400 [Bacillus cereus AH1272]
 gi|228740635|gb|EEL90902.1| hypothetical protein bcere0030_51380 [Bacillus cereus AH1273]
          Length = 347

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 111/358 (31%), Gaps = 23/358 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ ++ + LY ++     +L   ++ +           K       +
Sbjct: 4   KNLFQSKGFQRLIVLVLLALILYGMQSMLNLILITFMLTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +  +  V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIALLYVMLVAGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSVILSLFFLLEKARIVAFTSKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IAI   ++   A W+ G 
Sbjct: 178 SRLAIFYNEI------------EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++ EK
Sbjct: 286 PKFMSQKTNLPIFYTFMILIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDVEK 343


>gi|14590842|ref|NP_142914.1| hypothetical protein PH1000 [Pyrococcus horikoshii OT3]
 gi|8928493|sp|O58728|YA00_PYRHO RecName: Full=UPF0118 membrane protein PH1000
 gi|3257414|dbj|BAA30097.1| 355aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 355

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 132/343 (38%), Gaps = 27/343 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + +   +I+ ++ +++  +  FF+P+  A I  +  +P++     +    +   A+
Sbjct: 28  MEVSRVVTWIIIITLVALAIKTILPFFSPLFFAFITAYALYPLHIKLKERIGSKN--SAI 85

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T+ ++   ++ LL L Y     + +    +    +  I +P                 
Sbjct: 86  LLTLFLLLGALMILLILVYTLTPVIGQAYDYLTNLEKIKINIP----------------- 128

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  S            G  ++           L   + + F+   L         I
Sbjct: 129 LVPKSVISSLEGVIDEFIERGKGYLVSLTFSVPKYLLQVIVYLTFVYFFLVKEKEARELI 188

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + + + L   +          +  + +   +L + I+      +    + ++ +P+ +  
Sbjct: 189 TFEDEKLIRIIER------GNLTLQALIRVWLLLNIVKGILMTLGFLIFKVSNLPTAILA 242

Query: 245 GVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVG 302
           G++T + + IP     + + A + YL+ +G+I     L ++G   +  + D T+RP LV 
Sbjct: 243 GLLTVLFSFIPLFEGWMIWLAGAFYLVKQGHIIAGIGLAVYGFTLVSPLPDFTIRPKLVA 302

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              +   +    G++GG   +GL GL IGP+++ +   + +E 
Sbjct: 303 REAEFNDVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREW 345


>gi|222874438|gb|EEF11569.1| predicted protein [Populus trichocarpa]
          Length = 143

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/109 (31%), Positives = 52/109 (47%)

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +  +   GA + +  V+IY L  G +     L  +G + + +VD  LRP LVG   K
Sbjct: 1   MAFLSLLPAVGAGLIWAPVAIYFLATGAVGKGVILIAYGVLVIGLVDNVLRPLLVGKDTK 60

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +P        +GG+   GL G  IGPV+ AL   IW        +++EK
Sbjct: 61  MPDYIVLISTLGGMALFGLTGFVIGPVIAALFMAIWDMFSRMQVQDEEK 109


>gi|222874383|gb|EEF11514.1| predicted protein [Populus trichocarpa]
          Length = 257

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 85/236 (36%), Gaps = 7/236 (2%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           +P++  ++   ++  +     L+   S + + +       + F     +          L
Sbjct: 2   LPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLL 61

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++ ++  LF      + +   L++      P           K +       T++++  
Sbjct: 62  LVMTVVFMLFEVRHVPYKMRFALNN------PQIHIAGLHRALKGVSHYLALKTLLSLWT 115

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLW 284
           G+++     L GV   +   V+  ++  +P     IS     I +L+   ++    +   
Sbjct: 116 GVIVWLGLELMGVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGAL 175

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             +   ++   L P ++G  + +  +  F  L+     +G +G+ +   L ++  +
Sbjct: 176 FLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKI 231


>gi|156742554|ref|YP_001432683.1| hypothetical protein Rcas_2589 [Roseiflexus castenholzii DSM 13941]
 gi|156233882|gb|ABU58665.1| protein of unknown function UPF0118 [Roseiflexus castenholzii DSM
           13941]
          Length = 348

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/339 (11%), Positives = 100/339 (29%), Gaps = 15/339 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +  ++I+     L      +  A ++     PI                +   +  
Sbjct: 16  LSAVVAAWLIIHYATLLLEVVGILFGATLLSLAIAPIAERLAHW-HVPRGITVLAVYILG 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I  +  L     +E + L S+     Q        L                +   
Sbjct: 75  GIVLIALIELLIPVIRIEAQALRSQGPHLFQQVTTWVSGLP--------------VIGST 120

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 S        +        R         L ++ + +  F F  D     + + S
Sbjct: 121 VLSMHQSTIPNLGQQLGNFIDSVVRILFGTGGLLLDLLIVTVLSFLFITDPGLPKRLIAS 180

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +     + + +        +IA+   +V      + GVP  + +G++  +
Sbjct: 181 WIPPAVQPRLQDFIERLRRRLTRWVWAQILIALYFVVVYSIGLSVLGVPFALTIGIVGGL 240

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++P         +++   +  + +    + ++  + + +    + P L G  I +   
Sbjct: 241 LEIVPYVGGAFALILAVISSLSVSPWLVVWVIVFHVVVVELESHVIAPALYGRIIGVHPA 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                L  G +  G++G+F    +  +I    +E   ++
Sbjct: 301 LMLLALFVGAKAGGVVGVFFAVPITVVILACGQELRRSL 339


>gi|330983017|gb|EGH81120.1| hypothetical protein PSYAP_31588 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 242

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 84/240 (35%), Gaps = 3/240 (1%)

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
           ++       +   +  +                       I        + +  +   A+
Sbjct: 2   RLYELAPQILDWLQHAALPWVQAKFGLADGFWKFDKIKAAISEHMGQAGDIVSIVLSQAT 61

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
              +  + +  +++ + +  F+  RD   ++ ++  L      A   K++    +V+ + 
Sbjct: 62  ASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLPRQREAQIVKLAGECHEVLGAF 121

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT---AVSIYLLI 271
             G  ++ +G G++  +   L G+   + +GVI  + A++P    +       V+     
Sbjct: 122 IRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAIVPYMGFVIGIGSALVAGLFQF 181

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G+++    +     I   +    L P LVG  I L  +   F ++ G    G  G+ + 
Sbjct: 182 GGDLYPMMGIVAVFMIGQALEGMVLTPLLVGDRIGLHPVAVIFAILAGGELFGFTGILLA 241


>gi|119952812|ref|YP_945021.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
 gi|119861583|gb|AAX17351.1| hypothetical membrane spanning protein [Borrelia turicatae 91E135]
          Length = 357

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 45/338 (13%), Positives = 109/338 (32%), Gaps = 27/338 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                   ++ +++  L   +  F P+  A+++GF  +PIY+     K        V+  
Sbjct: 17  QSVFYVIALIVMLIAILKIAQTIFKPLAIAVVLGFLVYPIYTFLKKLKIPR-----VLIV 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +       +F +    +  L+ ++    +  I +                    +
Sbjct: 72  FVIFFVLFSFSYLVFSFVYYSVTVLIDQLPYYQKQLIFI-------------------MV 112

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +  K+ S      +   +I  F +R     + +  S++ + + L+F   +      +
Sbjct: 113 DILEKYKLDSAIISTIDFSKYIYPFLTRISNEIIGFASSLVVLFLLLYFLLSEIHIFDIK 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +  +    + + +    +   I         ++   G ++     L G        V+
Sbjct: 173 VKNAFKQSVSSIFIEALSTINSQISKYLGIKLFVSCLTGFLVFIGLKLFGQDFPRVWAVL 232

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           T +   IP    I      +   +     N+     +F++      ++   L P + G  
Sbjct: 233 TFVFNFIPSIGSILAVFFIMIAALVQFYPNLNLVFYIFIYNTFVQMLIGNILEPKMQGHR 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + L        L       G++GL I      +I VI 
Sbjct: 293 LDLSPFLLLCFLFFWGWLWGIVGLLIAYPFTVIIKVIV 330


>gi|30023467|ref|NP_835098.1| hypothetical protein BC5437 [Bacillus cereus ATCC 14579]
 gi|206970229|ref|ZP_03231182.1| putative membrane protein [Bacillus cereus AH1134]
 gi|228961701|ref|ZP_04123308.1| hypothetical protein bthur0005_51420 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229072903|ref|ZP_04206101.1| hypothetical protein bcere0025_50630 [Bacillus cereus F65185]
 gi|229082649|ref|ZP_04215112.1| hypothetical protein bcere0023_52660 [Bacillus cereus Rock4-2]
 gi|229130684|ref|ZP_04259639.1| hypothetical protein bcere0015_51170 [Bacillus cereus BDRD-Cer4]
 gi|229181686|ref|ZP_04309011.1| hypothetical protein bcere0005_50250 [Bacillus cereus 172560W]
 gi|229193690|ref|ZP_04320633.1| hypothetical protein bcere0002_53330 [Bacillus cereus ATCC 10876]
 gi|296505860|ref|YP_003667560.1| hypothetical protein BMB171_C5032 [Bacillus thuringiensis BMB171]
 gi|29899028|gb|AAP12299.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gi|206734806|gb|EDZ51975.1| putative membrane protein [Bacillus cereus AH1134]
 gi|228589843|gb|EEK47719.1| hypothetical protein bcere0002_53330 [Bacillus cereus ATCC 10876]
 gi|228601882|gb|EEK59378.1| hypothetical protein bcere0005_50250 [Bacillus cereus 172560W]
 gi|228652767|gb|EEL08650.1| hypothetical protein bcere0015_51170 [Bacillus cereus BDRD-Cer4]
 gi|228701081|gb|EEL53604.1| hypothetical protein bcere0023_52660 [Bacillus cereus Rock4-2]
 gi|228710246|gb|EEL62222.1| hypothetical protein bcere0025_50630 [Bacillus cereus F65185]
 gi|228797977|gb|EEM44983.1| hypothetical protein bthur0005_51420 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296326912|gb|ADH09840.1| hypothetical protein BMB171_C5032 [Bacillus thuringiensis BMB171]
          Length = 347

 Score = 82.7 bits (203), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKSRIVGFTAKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IA+   ++   A W+ G 
Sbjct: 178 SRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|147919164|ref|YP_687103.1| hypothetical protein RCIX2736 [uncultured methanogenic archaeon
           RC-I]
 gi|110622499|emb|CAJ37777.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 349

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/344 (14%), Positives = 112/344 (32%), Gaps = 19/344 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +++ I+    +F +     V+  +   + + PI        +    +  ++AT  
Sbjct: 21  IAVTIIVLLIVAAVAFFFRPLLDGVVFGVFFAYVTRPIKDFLRKYTK----YAPMLATFC 76

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   I    F       ++         A          L      +        ++S 
Sbjct: 77  ILLPVIAIFSFAAIELRNQISWFSDHGNEALAQVNAALEALGVPAELVVQLNDVLMNISQ 136

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                  +    +T     +                + +  I   ++  +DG  I   + 
Sbjct: 137 YAFAFAATVPIRETFTSLLLLG-------------TNALVSIFVCYYLLKDGDRIISTIM 183

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL    F       +    +++   ++G    A+    +    ++L  VP          
Sbjct: 184 SLTPARFQPAVSFFTVEADRILFGIYIGTFYTALFIATMSAVLFFLFSVPYLALCTAFVF 243

Query: 250 IMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKL 307
           I AM+P     + F  V+ Y+ I  +       FL   I +++  D  +RP+L+     +
Sbjct: 244 IAAMVPILSGMMVFIPVAAYMYIYRDPAIGILFFLSAIIFVYLPPDFLIRPYLINRASNI 303

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L      +GG    GL G F  P+ + L+  +++  +   +E
Sbjct: 304 HPLLIIMSFIGGGLAGGLSGFFAAPLAVGLLIAVYRTYLKYGEE 347


>gi|21228957|ref|NP_634879.1| ABC transporter, permease protein [Methanosarcina mazei Go1]
 gi|20907495|gb|AAM32551.1| ABC transporter, permease protein [Methanosarcina mazei Go1]
          Length = 280

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 85/264 (32%), Gaps = 9/264 (3%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++    + +LF     +  +  L+  +    Q             G           L
Sbjct: 1   MILLTGSGLLVLFFLSSQVQGIGALIGDIGNIQQDYAS---------GASALFTEHESEL 51

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S      ++    L+  G             +   +   ++ + +    +++    I   
Sbjct: 52  SKLADSGLIKPEDLQKIGNTIFSGITDLVSKVSYYFLTGVLVIPLMFGMYFKHHNKIGDY 111

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +           +    + + +   F    + +   GL+    ++L G+   + LG++
Sbjct: 112 IHAYAPPEHADGILRALESIGRELEDFFSAKMLESAIIGLICCIGFYLGGLDGWLFLGIL 171

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
              + +IP   PI      + +    ++  A    +   I   I +  L PF++   + +
Sbjct: 172 AGFLNIIPYIGPILGAIPPVIIGYIDSLMTALFAVITVVIAQTIDNLYLIPFMISEKVNI 231

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIG 331
             L +    +   + +G LG+ + 
Sbjct: 232 NPLLSVILTLAASKLLGPLGMVLA 255


>gi|258655025|ref|YP_003204181.1| hypothetical protein Namu_4918 [Nakamurella multipartita DSM 44233]
 gi|258558250|gb|ACV81192.1| protein of unknown function UPF0118 [Nakamurella multipartita DSM
           44233]
          Length = 364

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 101/314 (32%), Gaps = 21/314 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              PV  AL++     PI  + + ++          A ++ + + +  ++      +  +
Sbjct: 27  IIGPVFLALVLTILVDPIRGALVRRR-APQWVATGAAFLTALFIIVGLVVATVLGIVAFV 85

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             +       +Q    +  WL+ +                        ++ L +     I
Sbjct: 86  ALIPQYSAQWSQALAGLQSWLAGLGLSE-----------------ADIQSALSSLDPSTI 128

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             FA             ++  ++ L F   D      ++  L             R +  
Sbjct: 129 AGFAQSLLSGLSSALSVLLLAMVLLIFLAVDAAVFPARMAKL--RSGHEVALDGLRTIAA 186

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIY 268
             R  F   ++      ++  +A +L G+P+    G++  +   IP    I      +I 
Sbjct: 187 NTRQYFWVASVFGGIVAVLDTAALYLLGIPAAFVWGLLAFVTNYIPNVGFIISLIPPAIL 246

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
            L++G    A  + +      F++   L+P  VG  + L    +F  L+     +G LG 
Sbjct: 247 GLLQGGPGLAIAVVVIYCGLNFVIQSVLQPKFVGDAVGLTTTVSFLSLIVWTYILGPLGA 306

Query: 329 FIGPVLMALIAVIW 342
            +      L+  + 
Sbjct: 307 ILAIPASLLVKGML 320


>gi|255029473|ref|ZP_05301424.1| hypothetical protein LmonL_10968 [Listeria monocytogenes LO28]
          Length = 360

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 104/327 (31%), Gaps = 19/327 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                LP   TF  L+      G++G 
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVVGA 313


>gi|153952049|ref|YP_001397505.1| hypothetical protein JJD26997_0286 [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939495|gb|ABS44236.1| putative membrane protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 347

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 115/323 (35%), Gaps = 21/323 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYGMIELAKALKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+           +   V  V+  
Sbjct: 139 SNFTKSGAKFLVDMVLICVFYFFANLYGTELVIYLKSIVPIDKKEL-DDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASN 257

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 258 NLNSALVIFIYSVIIISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 317

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
             G+ +GP ++       +  ++
Sbjct: 318 FWGIILGPAILTFFVSTLRMYVI 340


>gi|11499389|ref|NP_070628.1| hypothetical protein AF1800 [Archaeoglobus fulgidus DSM 4304]
 gi|8928485|sp|O28474|Y1800_ARCFU RecName: Full=UPF0118 membrane protein AF_1800
 gi|2648744|gb|AAB89447.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304]
          Length = 340

 Score = 82.7 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 50/338 (14%), Positives = 109/338 (32%), Gaps = 19/338 (5%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + YF       ++  ++  + + P+               +VIAT  V+    V + +  
Sbjct: 20  TFYFFTPLLDGIVMGVVFAYVAKPVKRKIE---HVGRIKASVIATAIVILPISVLMFYGL 76

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
             G+ +   L++   +     + +   +                +   +       + + 
Sbjct: 77  IQGLNQAIYLITHYKVIESGILNILSKMG---------------IEEGEEYVKWITSNVF 121

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           +     I   A           L+    I+  F+   D  +  ++  S+        +++
Sbjct: 122 SILQSSIQPSAVEITKKATLLILNFFISIVVCFYALADMENFVRRTTSVVPEDRRDEFRR 181

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
               +     S + G  ++AI  GLV    +    VP    L  +  + A+IP  A    
Sbjct: 182 FVEEIDVTFESLWFGNFVVAILIGLVSLPFFLYFNVPFAPLLSGLMFLAALIPIFAEWMI 241

Query: 263 TAVSIYLLIKGNIFNAT-CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                  L+  ++      L +       + +  LRP+ VG   K+  L      +GG  
Sbjct: 242 ILPVSLYLLLVDVGRGLSFLLIGVVFLYVLPELILRPYFVGYTSKIHPLVLMLAFIGGGL 301

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
             G+ G FI P+++ L   I+          +     +
Sbjct: 302 VGGISGFFIAPMIVGLATAIYNYYTKEELATENHDPES 339


>gi|228955687|ref|ZP_04117685.1| hypothetical protein bthur0006_50370 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804056|gb|EEM50677.1| hypothetical protein bthur0006_50370 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 347

 Score = 82.3 bits (202), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKSRIVGFTAKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IA+   ++   A W+ G 
Sbjct: 178 SRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|116492928|ref|YP_804663.1| permease [Pediococcus pentosaceus ATCC 25745]
 gi|116103078|gb|ABJ68221.1| Predicted permease [Pediococcus pentosaceus ATCC 25745]
          Length = 350

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 50/349 (14%), Positives = 121/349 (34%), Gaps = 17/349 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +  W  +  +++ ++ L+ F + +L  +I  F S           + S     +I  
Sbjct: 10  KKSVQLWATLVALILIIFLLRDFMSQILLVVIFSFVSHVGIQKIRKYTKVSQPIGTIIFY 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++        F       ++K + S +  A         ++  I   +          
Sbjct: 70  IVLLAFAGFVFSFTASMIYDQLKGIPSLIKHAIDSDTFSNHYVQTILTEI---------- 119

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +  S  +    ++  +G++ + R       + +   LS++F +            +  +
Sbjct: 120 -NRNSQAVKGSQYIAMSGLNQLGRIGIAAEHVIIALFLSMVFNLTYNHLREFGHAILKSK 178

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            D +  +++      + R    ++ +      +I I    ++    W+ GVP  + + +I
Sbjct: 179 YDIMFGNVY-----YLLRKYVVILGTVIETQLVICIINTGLMVIGLWIIGVPKLLLMAII 233

Query: 248 TAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++ ++P    +     +SI       I +   +     +  F     L P L+ G   
Sbjct: 234 VFVLGLVPVAGVLISLIPLSIVAFSANGIISIAEVLCLVILIHFFESYFLHPRLMAGATD 293

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           LP   TF  L+ G + +G  GL +G   +A    +    +        K
Sbjct: 294 LPVFVTFITLIIGAKMLGTWGLIVGIPTVAFFIDLLGIQLKQHHPRNPK 342


>gi|308184350|ref|YP_003928483.1| hypothetical protein HPSJM_02870 [Helicobacter pylori SJM180]
 gi|308060270|gb|ADO02166.1| hypothetical protein HPSJM_02870 [Helicobacter pylori SJM180]
          Length = 348

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 129/356 (36%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      LY  + F    L A ++    + +      +   S+   + +  +
Sbjct: 4   QYFFWILFLIGFYWILYLYQDFLMDALIAGLLCVGLFQVKVFLNKRF--SNVISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y G   + E+        +    + +WL         +E  +   +
Sbjct: 62  FLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       + ++K
Sbjct: 290 IFKTTLKINEILIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQKEQK 345


>gi|327182581|gb|AEA31028.1| permease [Lactobacillus amylovorus GRL 1118]
          Length = 344

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 105/342 (30%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   +   + R ++  +I+  LY ++     +L   I  +    +         +  +  
Sbjct: 6   QKFKDNVPLRRVVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIRLVQRYIPKMPTGI 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+  + ++ L    +       M+++ ++V  V+   +                   E
Sbjct: 66  IVVVTYLIILALLYFVITVYLPMLMVQISKMVKSVMAFYES-----------------DE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +          + + F    A+  G + +   +S+I          +  
Sbjct: 109 SLRLMSYVTHYISKGELIEQAKHAMTFAFHTATNIGTLTIATFMSLILSFFYTIELKKMR 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  + S              +              +IAI    +      +  +P  
Sbjct: 169 EFSSLFVKSGYLKWLFEDICYFGKKFTNTFGVVLEAQFLIAICNTALTMIGLAIMRMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           VALG++  I++++P    I     +SI     G I     +F+   I   +    L P  
Sbjct: 229 VALGLMVLILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +      + 
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGSWGLIVGVPIFTFFLDVL 330


>gi|296332814|ref|ZP_06875274.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305673160|ref|YP_003864832.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150094|gb|EFG90983.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305411404|gb|ADM36523.1| putative integral inner membrane protein [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 350

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/355 (15%), Positives = 107/355 (30%), Gaps = 23/355 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLAVI 65
           G+ R+ I  ++   LY  K     +L   I  F    +              S   +   
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFLSRFFRVSQRVVITF 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  L  V     +     ++++LV ++     H   +P                  
Sbjct: 72  LYMLLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPDTIP-----------------F 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                     ++ +     G + +  + +      L   +++I  +  LF   R    ++
Sbjct: 115 FDEITSVFGDINISSYVKEGFNVVYTYLADISTFGLQIVMALILSMFFLFEKKRLTEFMA 174

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   S     +            +          IIA+   ++   A W+   P    L 
Sbjct: 175 KFKTSKLRVFYEEI-SFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLS 233

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++   + +IP     IS   +SI     G       + L       I    L P L+   
Sbjct: 234 IMVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAK 293

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +LP   TF  L+      G+ GL IG  +   +  I   +       + +  SN
Sbjct: 294 TELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEEGPKRFQEKSN 348


>gi|237752007|ref|ZP_04582487.1| membrane protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229376574|gb|EEO26665.1| membrane protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 355

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 113/344 (32%), Gaps = 14/344 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
                 +  +L        F   +L A ++   +  IY + + + +      A++  + +
Sbjct: 8   FFLIAFVLTLLALFRLYAPFLMNLLIAFLLFIATQGIYCALLKRLKSQLLVSALMVLILI 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
              F+     L     +     +                 S          +  +  ++ 
Sbjct: 68  TLCFVPIFYILLSLANIATNLDLGNFQNFLLDTQARLTLFSKDLILYLPDIIQNEMNTYL 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +    ++   +   G++ I + +        D    ++F+    ++    G      +  
Sbjct: 128 EQFHAINWGDILKQGLNLIAKASKNSISFVSDTLFILVFLFFFYYYGNTLGSYFLGLI-- 185

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                 P   K +   V  VI   F       I +G + G      G  S++        
Sbjct: 186 ---PFNPTQTKSLYNEVSAVISVVFYSSIFSMILQGTLFGILMLFFGYNSYLLAVFYGFA 242

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFL--------V 301
             +   G  + +  +  Y L  GN  NA  + L+  I +  + D  ++PF+        +
Sbjct: 243 SLVPVVGGSLVWLPIVGYELYLGNYTNAIVIALYSIIIIATLADNGIKPFIIAFINRVLI 302

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             P+++  +  FF ++ G+ + G  G+ +GP + AL   + +  
Sbjct: 303 KTPVQINEMLIFFAIIAGLTSFGFWGIVLGPAITALFIALLRIY 346


>gi|224499485|ref|ZP_03667834.1| hypothetical protein LmonF1_07202 [Listeria monocytogenes Finland
           1988]
          Length = 347

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/334 (16%), Positives = 107/334 (32%), Gaps = 19/334 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                LP   TF  L+      G+ GL +G  + 
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVF 320


>gi|157415601|ref|YP_001482857.1| hypothetical protein C8J_1281 [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283956749|ref|ZP_06374225.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 1336]
 gi|157386565|gb|ABV52880.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 81116]
 gi|283791724|gb|EFC30517.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni 1336]
 gi|307748244|gb|ADN91514.1| Putative membrane protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 347

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 115/323 (35%), Gaps = 21/323 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+           +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASN 257

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 258 NLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 317

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
             G+ +GP ++       +  ++
Sbjct: 318 FWGIILGPAILTFFVSTLRMYVI 340


>gi|193070227|ref|ZP_03051171.1| inner membrane protein YdgG [Escherichia coli E110019]
 gi|192956408|gb|EDV86867.1| inner membrane protein YdgG [Escherichia coli E110019]
          Length = 294

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 82/292 (28%), Gaps = 21/292 (7%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          I    ++   ++ L +L        + L             +   L  +
Sbjct: 6   RWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRV 65

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   +L      +     + +     +N +  I         + L+           
Sbjct: 66  GIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---------- 115

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +   +     P       +     +    +  T I+I  GLV  +  
Sbjct: 116 --------PQLPGKFQQM--MARPVEGMAAIQRAIDSVSHYLVLETAISIITGLVAWAML 165

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               V      G++   +  IP     ++       +L+    + A  +     +   + 
Sbjct: 166 AALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVF 225

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L P ++G  + L  L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 226 GNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 277


>gi|259502008|ref|ZP_05744910.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259170009|gb|EEW54504.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 347

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 104/334 (31%), Gaps = 20/334 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVS 69
           + R+ ++ +I+ +L+ ++     +L   I+ +              + S   + +I    
Sbjct: 14  VRRFAVLAVIVFALWMMRSMMNMILFTFILTYIVVNWVHLVRRWLPKLSPAVVVIITYAL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L    +       + ++ ++V+ V+                      ++    +   
Sbjct: 74  LILLLYFGITQYLPVLVRQIIKMVNSVLKFYST-----------------NDATNFYQYV 116

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +   +      +G+       +  G++   + LS+I          +        L+
Sbjct: 117 NHYVSTGTIMTQLRHGLTIAVSTITSVGIVAFTFLLSLILSFFYTLELPQMESFSRLFLE 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S     F        +               IAI   ++     +   +P   AL ++  
Sbjct: 177 SKFAWFFQDV-AYFGKKFTNTFGVVLEAQFFIAICNTVITTICLFFMKMPQIFALALVVF 235

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           + +++P    I     +SI     G I +   + +   +        L P  +     LP
Sbjct: 236 VFSLVPVAGVIISTIPLSIVAYSVGGIRDVIYIIIMVIVIHAFEAYVLNPKFMSSQTDLP 295

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  L+ G    G  GL +G  +   +  I 
Sbjct: 296 IFYTFIVLLIGEHFWGTWGLIVGVPIFTFLLDIL 329


>gi|150019553|ref|YP_001311807.1| hypothetical protein Cbei_4743 [Clostridium beijerinckii NCIMB
           8052]
 gi|149906018|gb|ABR36851.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 363

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/347 (14%), Positives = 113/347 (32%), Gaps = 15/347 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSW----PIYSSFISKKEES 58
             +     + R  ++ II+  +Y L+      L      + ++     I        +  
Sbjct: 5   RELFKKDIVRRICVLLIIVFFMYILRSMLNLFLLTFFFTYIAYSLQVGITKRLDKFIKVK 64

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              + +   + +  + I          + ++ E+  K+   +           DI G + 
Sbjct: 65  PIIVTLFLYIFMTSIIIFASYRYIPIIIRQLTEIGMKISRFD---------FRDIGGEVL 115

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
           ++ +              +    +    D   R+AS  G    +  +S+I  +  +    
Sbjct: 116 STYIVPYFGKFDFMSFFRNSEINELLNFDQFLRYASNIGTWSFNIFVSLILSLFFMVERE 175

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +     S+  DS    L+  Y K                  IIA    ++   + +  G 
Sbjct: 176 KIKEFFSEFQDSKIAILYR-YTKDFGINFLNSFGKVIQAQIIIAFVNSILSVISLFALGF 234

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + LGV+  + +++P    I+    +SI     G       + +  A+   +    L 
Sbjct: 235 PQVLGLGVMIFLFSLVPVAGTIASLIPLSIIAYTVGGFKMILYILIIIAVLHALESYVLN 294

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P  +    +LP    F  L+     MG+ GL +G  L+  +  +   
Sbjct: 295 PRFMADKTELPVFVVFITLLVSEHFMGVWGLLLGVPLLMFVLDLLNI 341


>gi|163939774|ref|YP_001644658.1| hypothetical protein BcerKBAB4_1797 [Bacillus weihenstephanensis
           KBAB4]
 gi|229132797|ref|ZP_04261642.1| hypothetical protein bcere0014_17260 [Bacillus cereus BDRD-ST196]
 gi|163861971|gb|ABY43030.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
 gi|228650624|gb|EEL06614.1| hypothetical protein bcere0014_17260 [Bacillus cereus BDRD-ST196]
          Length = 339

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 115/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+++ LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++   +  L        +++ +L+ +  L  Q+                    
Sbjct: 65  IAGLYIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIA 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVVYVVYILVFITVIHALESYLLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|225867420|ref|YP_002752798.1| hypothetical protein BCA_5589 [Bacillus cereus 03BB102]
 gi|225788925|gb|ACO29142.1| putative membrane protein [Bacillus cereus 03BB102]
          Length = 347

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/355 (11%), Positives = 106/355 (29%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKLIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IA+   ++   A  + G 
Sbjct: 178 SRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNCILSVIALSILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   +++ 
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKE 340


>gi|228988666|ref|ZP_04148752.1| hypothetical protein bthur0001_53210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771117|gb|EEM19597.1| hypothetical protein bthur0001_53210 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 344

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKLVIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTSKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IA+   ++   A W+ G 
Sbjct: 178 SRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|229166826|ref|ZP_04294574.1| hypothetical protein bcere0007_17940 [Bacillus cereus AH621]
 gi|228616629|gb|EEK73706.1| hypothetical protein bcere0007_17940 [Bacillus cereus AH621]
          Length = 339

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 52/341 (15%), Positives = 115/341 (33%), Gaps = 19/341 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+++ LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILVLVLYGLKSMINLILITFILTFLMDRFQKFISKKLKVNRKVV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++   +  L        +++ +L+ +  L  Q+                    
Sbjct: 65  IAGLYIVLVTFIVTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIA 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSKLKIFYGEI-AYFGERFARSFGKVIEAQFLIAVVNCVLTVIALVILGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVVYVVYILVFITVIHALESYLLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 287 SAKTNLPVFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 327


>gi|113953472|ref|YP_730790.1| hypothetical protein sync_1585 [Synechococcus sp. CC9311]
 gi|113880823|gb|ABI45781.1| Domain of unknown function, putative [Synechococcus sp. CC9311]
          Length = 355

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 102/324 (31%), Gaps = 17/324 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N + ++  +   ++ + L+ L+     +  A+++  T        + +         ++
Sbjct: 1   MNARTLLIALTSILLTLLLWQLRWVLLILFGAVVLAVTLDVPILKLMERFRLQRPVALLL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V +     + +  L    + + ++L + +         +      +            
Sbjct: 61  VLVILFLGGTLVVQLLLPELLGQFEQLTALLPNLIDKIRSIIASQPSL------------ 108

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  L I     L    I  +      +     +  + ++ M +       D  S  
Sbjct: 109 -----SDLNISPSESLSWTRIQPVGAQLLGYAGGAANGLIQVLLMSLLAILLALDPKSHR 163

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           Q L ++      A   ++       +     GMTI A    ++  +   + GVP  +  G
Sbjct: 164 QMLIAVSPRPARAQVTQLLDRCRDALGGWLAGMTISATAVFVLTWTGLAILGVPLALLSG 223

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++  +P   P + T + + + +  +      + +       +    L P L+   +
Sbjct: 224 LVCGLLTFVPTIGPSAATLLPMGIALLISPNLMLQVLVLRFALQNLEAFVLTPVLLSRTV 283

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLF 329
            L         +     +GL G+ 
Sbjct: 284 NLLPTVALTAQLSLGALLGLPGVL 307


>gi|86151004|ref|ZP_01069220.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315124803|ref|YP_004066807.1| hypothetical protein ICDCCJ07001_1299 [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85842174|gb|EAQ59420.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|315018525|gb|ADT66618.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 347

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 115/323 (35%), Gaps = 21/323 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+           +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 198 VLYSMVIVAIFQGALFGLITMFYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASN 257

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 258 NLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 317

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
             G+ +GP ++       +  ++
Sbjct: 318 FWGIILGPAILTFFVSTLRMYVI 340


>gi|308182723|ref|YP_003926850.1| membrane protein [Helicobacter pylori PeCan4]
 gi|308064908|gb|ADO06800.1| membrane protein [Helicobacter pylori PeCan4]
          Length = 349

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 128/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y G   + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVVIVPLYFIVYKGSNVIFEI------NFEKLSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F  T+   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSATSITGYLLKVSSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPITIYELYHGNVNEAIFITLYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|332097880|gb|EGJ02853.1| hypothetical protein SD15574_0317 [Shigella dysenteriae 155-74]
          Length = 291

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 82/292 (28%), Gaps = 21/292 (7%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +          I    ++   ++ L +L        + L             +   L  +
Sbjct: 3   RWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRV 62

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +   +L      +     + +     +N +  I         + L+           
Sbjct: 63  GIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV---------- 112

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     +  +   +     P       +     +    +  T I+I  GLV  +  
Sbjct: 113 --------PQLPGKFQQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAML 162

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
               V      G++   +  IP     ++       +L+    + A  +     +   + 
Sbjct: 163 AALDVRFAFVSGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVF 222

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              L P ++G  + L  L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 223 GNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 274


>gi|18977957|ref|NP_579314.1| hypothetical protein PF1585 [Pyrococcus furiosus DSM 3638]
 gi|18893731|gb|AAL81709.1| hypothetical protein PF1585 [Pyrococcus furiosus DSM 3638]
          Length = 341

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/357 (12%), Positives = 121/357 (33%), Gaps = 28/357 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +     +++ I+ +    +K    P++  L   + ++P       K  E      +
Sbjct: 1   MEREKIFWIAVVLLILFLVWETIKYLITPIVFGLAGTYIAYPFQRKLSKKVGEKK--ATL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I    V  L  + L+ +  +    +K L   +         +                  
Sbjct: 59  IVLAIVAVLSTLFLIGVTLWITDTLKNLYLYLDRFFIWLSGL------------------ 100

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +  S        L  +  + +     ++ +      L +I  +   +    +   +
Sbjct: 101 ----NMPSFLGALFDALAQSFPEKLRSILLQYTLSLPKLALQLIVFLAVFYSSLLNADFL 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH--- 241
           S+++ +L         KK+       + +        +  + + L   +++  + +    
Sbjct: 157 SKEIYTLLPSSNNELGKKLIEKTRDTLDAILKTWLFFSAAKAIFLALGFYIFDISNVGGS 216

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFL 300
           +A G++  I+ ++P         V   +L + +I  A    L+G + +    D  ++P L
Sbjct: 217 IAAGILCMILELLPVLGGWIMWIVGAIILWQKSIMLAILFALYGILTVSPFPDYFIKPRL 276

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           V     +  +    G+ GG+   G +G+ +GP+ + L + + +      +    + S
Sbjct: 277 VRNRASVSSVVALVGIFGGIMAFGAVGILLGPISIGLFSALLEAWKEIEERETTQPS 333


>gi|224531876|ref|ZP_03672508.1| membrane protein [Borrelia valaisiana VS116]
 gi|224511341|gb|EEF81747.1| membrane protein [Borrelia valaisiana VS116]
          Length = 362

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 106/343 (30%), Gaps = 27/343 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                       +I+ I +      +  F P+  ++++ F  +P+Y+     K       
Sbjct: 12  RPWRVEYVFYFIVIVLIFIGVFKIAEAVFKPLAISIVLVFLVYPVYTFLEKFKVPK---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +            
Sbjct: 68  -FLIVFLIFFLLFSFSYLIFNFVYYSVTVLIKQLPYYQNQLAFIMKDVLSRY-------- 118

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                      KI S      N   +I  F +R     + +  S++ + + L+F   +  
Sbjct: 119 -----------KIDSSVINNMNFSGYIYPFLTRASNEIIGFTSSLVVVFLLLYFLLSEIH 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
               +LD   +      +      +   I        +++   G+++     L G    +
Sbjct: 168 VFGMKLDKAFKKPVSTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPL 227

Query: 243 ALGVITAIMAMIPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
              V+T +   IP    I       ++  +    N+     +F++      ++   L P 
Sbjct: 228 VWAVLTFVFNFIPSIGSILAVFFIVITSLIQFYPNLNIVLYIFIYNTSVQMLIGNILEPK 287

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           + G  + +        L       G++GL I      ++ VI 
Sbjct: 288 MQGKRLDISPFLLLCFLFFWGWLWGIVGLLIAYPFTVIVKVIV 330


>gi|323956589|gb|EGB52327.1| ydiK protein [Escherichia coli H263]
          Length = 247

 Score = 82.3 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/211 (20%), Positives = 87/211 (41%), Gaps = 1/211 (0%)

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           I     +          + +    M++     Y  G  ++Q +      L          
Sbjct: 23  IGTTTTWFVGQAAHIGRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVL 82

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +  + IR+  LG+ + A+ + ++ G    ++GVP    L V+  +  ++  G        
Sbjct: 83  LAAQAIRAVALGVVVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPA 142

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I+L   G+    T L +W  +   + D  +RP L+     LP +    G++GG+   G+
Sbjct: 143 IIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPMLIRMGADLPLILILSGVIGGLIAFGM 201

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           +GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 202 IGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 232


>gi|228994155|ref|ZP_04154055.1| hypothetical protein bpmyx0001_48780 [Bacillus pseudomycoides DSM
           12442]
 gi|229000224|ref|ZP_04159793.1| hypothetical protein bmyco0003_47770 [Bacillus mycoides Rock3-17]
 gi|229007747|ref|ZP_04165338.1| hypothetical protein bmyco0002_46250 [Bacillus mycoides Rock1-4]
 gi|228753517|gb|EEM02964.1| hypothetical protein bmyco0002_46250 [Bacillus mycoides Rock1-4]
 gi|228759556|gb|EEM08533.1| hypothetical protein bmyco0003_47770 [Bacillus mycoides Rock3-17]
 gi|228765607|gb|EEM14261.1| hypothetical protein bpmyx0001_48780 [Bacillus pseudomycoides DSM
           12442]
          Length = 344

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 47/358 (13%), Positives = 115/358 (32%), Gaps = 23/358 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           +++   +G  R +++ ++ + LY L+  F  +L   I+ +           K       +
Sbjct: 4   KSLFQSKGFQRLLVLLLLALILYGLQSMFNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +  +  V ++    V L+       +++ +L+ +  +  ++         +      
Sbjct: 64  RKIIISLLYVMLVGGITVTLVKYLPVLTVQISQLIYQFNVFFKNPPD------NEIIKAA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +        N   F  +F     +           +     F  
Sbjct: 118 INAINHMELSKYIGQGVDILYKSIANVGKFGLQFFLSLILSLFFLLEKARIVAFTAKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IAI   ++   A W+ G 
Sbjct: 178 SRLAVFYNEI------------EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G+I     + +  A+   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLVPLCMIAYNIGSITYVVYILIIVAVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P  +     LP   TF  L      +G+ GL IG  +   +  +   +   I+++  K
Sbjct: 286 PKFMSQKTNLPIFYTFMVLTFSEHFLGVWGLIIGIPIFVFLLDVLDVTSDEIEKDSAK 343


>gi|326941042|gb|AEA16938.1| hypothetical protein CT43_CH3271 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 220

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 78/211 (36%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +   T   T  +  +    + F     +  L+ + +   LF+  +DG  +         
Sbjct: 1   MVKEYTVDFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFIS 60

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I   +   I S   G  I+++  G++L   Y + G+   V L ++  I+ +
Sbjct: 61  EQRQPAAMRILDDMHYAISSYIRGQIIVSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNI 120

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P   PI     ++ +    +      + +   +      K + P ++G  + +  +   
Sbjct: 121 VPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQVMGKKLDIHPITII 180

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F ++      G++G+ +     A++ V+   
Sbjct: 181 FIILTAGNLFGIMGIILAIPGYAILKVLVTH 211


>gi|296448712|ref|ZP_06890572.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
 gi|296253781|gb|EFH00948.1| protein of unknown function UPF0118 [Methylosinus trichosporium
           OB3b]
          Length = 340

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/340 (10%), Positives = 99/340 (29%), Gaps = 23/340 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
                 +++F+ LV+ +  +    P++ A+ I    +P+ ++   +          +   
Sbjct: 6   NTAGAALLIFLTLVAAHVGQTVVEPIVFAIFIIALIFPLETTLERRL--PRWAALALTVT 63

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + + + +     + + G   +      +           +WL      + A      + +
Sbjct: 64  AALAVIVTLSSLMVWGGGELVDWFARNLDRVRASFEASTKWLETHDIFVGALITEHANAA 123

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +   + T +       +  F      +                    +  ++ + +
Sbjct: 124 WMLGVIRAAATRINVLAGFALVVFIYVVMGL-------------------AETSTLRKNI 164

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +             +  + K  R   L  T  ++  G ++       G+    A GV++
Sbjct: 165 AAATNDETAQRLLSAAAHIAKKFRRYMLVRTAASLATGALVFLFALAIGLEGAAAWGVLS 224

Query: 249 AIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  +P    +  T +          +   A  +     +   ++   L P   G  + 
Sbjct: 225 FALNYLPYIGSLVVTVLPALFAYVQFDSAQAALLVLGALCVIQLVIGSGLEPVFSGTALA 284

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +      F ++      GL G FIG  +      + +   
Sbjct: 285 MSPTVVVFAVLLWTFLWGLPGAFIGVPIAIAALTMCEHFP 324


>gi|219850335|ref|YP_002464768.1| hypothetical protein Cagg_3493 [Chloroflexus aggregans DSM 9485]
 gi|219544594|gb|ACL26332.1| protein of unknown function UPF0118 [Chloroflexus aggregans DSM
           9485]
          Length = 348

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/339 (11%), Positives = 101/339 (29%), Gaps = 15/339 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +  ++I+     L      +  A ++     PI                +   +  
Sbjct: 16  LSAVVAAWLIIHYATLLLEVVGILFGATLLSLAIAPIAERLAHW-HVPRGITVLAVYILG 74

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I  +  L     +E + L S+     Q        L                +   
Sbjct: 75  GIVLIALIELLIPVIRIEAQALRSQGPHLFQQVTAWVSGLP--------------VIGST 120

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 S        +  +     R         L ++ + +  F F  D     + + S
Sbjct: 121 VLSMHQSTIPNLGQQLGNVIDSVVRILFGTGGLLLDLLIVTVLSFLFITDPGLPKRLIAS 180

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                     +     + + +        +IA+   +V      + GVP  + +G++  +
Sbjct: 181 WIPAAVQPRLQDFIERLRRRLTRWIWAQILIALYFVVVYSIGLSVLGVPFALTIGIVGGL 240

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + ++P         +++   +  + +    + ++  + + +    + P L G  I +   
Sbjct: 241 LEIVPYVGGAFALILAVISSLSVSPWLVIWVIVFHVVVVELESHVIAPALYGRIIGVHPA 300

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                L  G +T G+LG+F    +  +I    +E   + 
Sbjct: 301 LMLLALFVGAKTGGVLGVFFAVPVTVVILACGQELRHSF 339


>gi|146279674|ref|YP_001169832.1| hypothetical protein Rsph17025_3659 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557915|gb|ABP72527.1| hypothetical protein Rsph17025_3659 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 390

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/339 (13%), Positives = 110/339 (32%), Gaps = 21/339 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
               G +  +   ++L  L   +     +  ++I+   +    +     +         +
Sbjct: 30  RVQTGALVIIAFAVVLFLLVQAQFILISLAVSVILFSLTSDAIALVGRVRFGPVKIPNWL 89

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           AT   + L    LL +    + ++  ++   +  ++        +    G          
Sbjct: 90  ATSLALLLLATVLLSVAAVIVSQVNTVLLTALSYSEQAPAAVAAIFSWLG---------- 139

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                   +   E  L +     I  +             + + +I+ + F + +     
Sbjct: 140 --------QDAEEAVLSSIRAVEISGYLRTLAAQAGALMQATVLVILFVGFLFAERVWFP 191

Query: 186 QQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +L +L          ++I   + + +    L  T+++   GL++       G+     L
Sbjct: 192 VKLLNLIGDPDRARRVEEIVGSIMRRVNRYLLVKTLVSAITGLLVWGVALAFGLDLAAPL 251

Query: 245 GVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G++T I+  IP    I      V +  +   ++  A  L  +     FI    L P L+G
Sbjct: 252 GMLTFILNFIPSIGSIVSTLLIVLVAFVQTVDVATALSLLAFVGAIQFICGNVLDPMLMG 311

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             ++L        L       G+ G+F+   +M  + ++
Sbjct: 312 RALQLSSFGIIISLAFWGAVWGIPGMFLSVPIMVALMIV 350


>gi|42784615|ref|NP_981862.1| hypothetical protein BCE_5570 [Bacillus cereus ATCC 10987]
 gi|222098911|ref|YP_002532969.1| hypothetical protein BCQ_5280 [Bacillus cereus Q1]
 gi|229199563|ref|ZP_04326224.1| hypothetical protein bcere0001_50610 [Bacillus cereus m1293]
 gi|42740547|gb|AAS44470.1| membrane protein, putative [Bacillus cereus ATCC 10987]
 gi|221242970|gb|ACM15680.1| membrane protein, putative [Bacillus cereus Q1]
 gi|228583968|gb|EEK42125.1| hypothetical protein bcere0001_50610 [Bacillus cereus m1293]
 gi|324329386|gb|ADY24646.1| hypothetical protein YBT020_27120 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 344

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 117/355 (32%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKLIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------------- 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            SEL    ++    +++        + +        +FG+  L   +  +F ++      
Sbjct: 111 -SELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIV 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  +   ++         +   +   +          +IA+   ++   A W+ G 
Sbjct: 170 AFTAKFKESRLAIFYTEI----EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|270157491|ref|ZP_06186148.1| putative permease [Legionella longbeachae D-4968]
 gi|289164121|ref|YP_003454259.1| transporter [Legionella longbeachae NSW150]
 gi|269989516|gb|EEZ95770.1| putative permease [Legionella longbeachae D-4968]
 gi|288857294|emb|CBJ11121.1| putative transporter [Legionella longbeachae NSW150]
          Length = 363

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 102/335 (30%), Gaps = 21/335 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            ++++I    L        P++ A+ I      I +   +     S     ++ +    +
Sbjct: 11  LIVIWITGYFLIVGSHVLIPLVIAIFIWHLLNTISNIIQAIPRVGSRLPGWLSMIFAFVI 70

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             V +          +  +++      ++ + +   +         S L     S     
Sbjct: 71  VAVFIFIFINIITNNVNNVIAASNRYQENLLAIFSNIDKTLHIEILSSLNQMIKSLN--- 127

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          +         +F     S + +++ + F + + +    ++D+L  
Sbjct: 128 ---------------LQTILVNVYGVFSTLASSTVLIMLYVAFLFAEQYFFLSKIDALFP 172

Query: 194 HL-FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            L        I   +    ++     +I++I   L          +       ++   + 
Sbjct: 173 SLENRILVNNILNHIVMNTQTYLGLKSILSIVTALSSWIIMKWVKLDFAEFWALLIFFLN 232

Query: 253 MIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            IP    I       S+ ++   +    T + L      FIV   + P  +   + L  L
Sbjct: 233 FIPNIGAIIAIAFPASLAIVQFTSWIPFTKIILGLGTVQFIVGNIIEPRYLSNSLNLSPL 292

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              F L       GLLG+F+   +  ++ +I+   
Sbjct: 293 VILFTLAVWGDIWGLLGMFLAVPITVMMMIIFAHF 327


>gi|255023950|ref|ZP_05295936.1| conserved integral membrane protein [Listeria monocytogenes FSL
           J1-208]
          Length = 319

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 53/333 (15%), Positives = 108/333 (32%), Gaps = 19/333 (5%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
              R ++  ++ + LY L+     +L   I  F    + +  + +       + ++    
Sbjct: 5   TARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLIVIVLYSL 64

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V     V ++      + ++ +LV  +V    +                     T     
Sbjct: 65  VAIFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSDNTIVKWI 107

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              LK  +       G+DFI    S  G + L + L++I  +       R      Q + 
Sbjct: 108 VGFLKESNIQKYLQTGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTSFTGQFMT 167

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S    +F        +              +IA+   ++   A +L   P  ++L ++  
Sbjct: 168 SKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTIITTIALYLMDFPQLLSLSIMVF 226

Query: 250 IMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++ +IP    I      + +    G   +   + +   I   I    L P L+     LP
Sbjct: 227 VLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKTNLP 286

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
              TF  L+      G+ GL +G  +   +  I
Sbjct: 287 VFYTFIILIFSETFFGVWGLIVGIPVFVFLLDI 319


>gi|47568556|ref|ZP_00239255.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47554798|gb|EAL13150.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 344

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 117/355 (32%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKLVIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------------- 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            SEL    ++    +++        + +        +FG+  L   +  +F ++      
Sbjct: 111 -SELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIV 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  +   ++         +   +   +          +IA+   ++   A W+ G 
Sbjct: 170 AFTAKFKESRLAIFYTEI----EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|319935500|ref|ZP_08009935.1| hypothetical protein HMPREF9488_00766 [Coprobacillus sp. 29_1]
 gi|319809531|gb|EFW05948.1| hypothetical protein HMPREF9488_00766 [Coprobacillus sp. 29_1]
          Length = 343

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/320 (11%), Positives = 102/320 (31%), Gaps = 27/320 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   + +F I     ++   F P++ AL   F   P+   F +    S   + V   +S+
Sbjct: 20  LYYVITLFQIGAFFCYVFNLFFPLIIALFFHFLLDPLIDYFTN-DRLSRKIVVVHIYLSL 78

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             LF++   F+  Y + +  +  ++    +    P+   + D        +         
Sbjct: 79  SLLFVIGCYFVAPYILEQCLKFYNQYCNGHLRLNPIFSTIFDFLQQYQVID--------- 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                            ++    + +    + +  +I+  +   F+   D   + ++L  
Sbjct: 130 -----------------YLMGILNGWTQSVIYWVTNILLAMGISFYLSYDNMHLIEKLIV 172

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +  + +  +       + +  +   L+    ++       + + +  +I
Sbjct: 173 YLPFDKQGPCMQTLKRLKLLTYQFMKSLILDFLFFFLMCLIPFFFIDEDLFLWIALFLSI 232

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P   P       +      +       F+   +  ++    L+P+L    I+L  +
Sbjct: 233 TNLVPYIGPYIGGIPVVIYEYIADPQMGYVAFIAVIVLQYLESSYLQPYLFSKCIRLHPI 292

Query: 311 PTFFGLVGGVRTMGLLGLFI 330
             F  L       G++G+  
Sbjct: 293 ALFIALTFFGDLFGIVGMIF 312


>gi|227893788|ref|ZP_04011593.1| permease [Lactobacillus ultunensis DSM 16047]
 gi|227864396|gb|EEJ71817.1| permease [Lactobacillus ultunensis DSM 16047]
          Length = 365

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 107/344 (31%), Gaps = 19/344 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R+++  +I+  LY ++     +L   I  +    +         +  +  
Sbjct: 26  QRFKNNVPLRRFIVFLLIVAFLYEMRAMTNTILLTFIFTYVIVHLIHLVQRYLPKMPTGV 85

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + VI  + ++ L    +         ++ +++  V+   +                  +E
Sbjct: 86  IVVITFLIILALLYFVITVYLPMLAAQITKMIKSVMAFYES-----------------NE 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +          + +      A+  G + +   +S+I          +  
Sbjct: 129 SSRLMSYVTRYISKAELIEQAKHAMTIAFHTATSIGTLTIATFMSLILSFFYTIELDKMR 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              +  + S          +   +               IAI   ++      +  +P  
Sbjct: 189 EFSALFVRSGYLKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTVLTMIGLAVMKMPQI 248

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I++++P    I     +SI     G I     +F+   I   I    L P  
Sbjct: 249 IALGLMVFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKF 308

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +    +LP   TF  L+      G  GL +G  +   +  +   
Sbjct: 309 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVLDI 352


>gi|315301767|ref|ZP_07872817.1| YubA [Listeria ivanovii FSL F6-596]
 gi|313629863|gb|EFR97946.1| YubA [Listeria ivanovii FSL F6-596]
          Length = 264

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 87/261 (33%), Gaps = 19/261 (7%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  ++ + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIDNKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 K +    +   +  V ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKK-KWKRGWAIALLYVVIIGLIILLFSFVIPAVKDQIISLFKTFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +  + ++S          T +    I  I         + L    + 
Sbjct: 128 NEFSQSSLFDQLKDKLSTNMSDIMKTISEKGTSVLNGAITSIGSIVGTVTEVILAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + +     +  +DG  +   L  +      A+ +++       I S   G  I+++  G+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGI 243

Query: 228 VLGSAYWLAGVPSHVALGVIT 248
           +L   Y + G+P  + L +I 
Sbjct: 244 LLFIGYLIIGLPYALTLAIIA 264


>gi|283954986|ref|ZP_06372493.1| hypothetical protein C414_000350024 [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793484|gb|EFC32246.1| hypothetical protein C414_000350024 [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 347

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 117/328 (35%), Gaps = 21/328 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++         K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFTPFVYTMIELAKASKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLYPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+           +   V  V+  
Sbjct: 139 SSFTKSGAKFLVDMVLICVFYFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 198 VLYSMVIVAIFQGTLFGLITMFYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASN 257

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 258 NLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 317

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
             G+ +GP ++       +  ++  ++N
Sbjct: 318 FWGIILGPAILTFFVSTLRMYMILKEKN 345


>gi|254432455|ref|ZP_05046158.1| hypothetical protein CPCC7001_2348 [Cyanobium sp. PCC 7001]
 gi|197626908|gb|EDY39467.1| hypothetical protein CPCC7001_2348 [Cyanobium sp. PCC 7001]
          Length = 355

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 13/294 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           L  F A  ++A +I F           +         V+     + L  + +++L    +
Sbjct: 34  LAPFPALFVAAALIAFLLDIPSRWLRQR-GLPRPLAMVLVLGVALGLLALAVIWLVPRLI 92

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ ELV+ +      G      L              + +               +   
Sbjct: 93  DQLAELVAALPGWLAQGEVWLDALEAWAE--------DQGIPTDFGDLSSDLLSRLSKLA 144

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             + +         +   ++ + +++   F    G  IS  L         +    +   
Sbjct: 145 TQLSQQLLGLLGATVGLTVNTVIVLVLAVFLLLGGERISAGLAQWLPPEARSL---VVDT 201

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + +  R  F G   +A     +    + L  +P  V   V      ++P  + ++   VS
Sbjct: 202 LSRTFRGYFAGQVALATILSSLQIVVFTLLAIPYGVLFAVAIGFTTLVPYASALTIVLVS 261

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             +    +      + +       +VD+ ++P L+G  + L        L  G 
Sbjct: 262 GLVA-LNDPSTGAEVLVAAIAVGQLVDQIIQPRLMGSIVGLQPAWLLICLPVGA 314


>gi|229142182|ref|ZP_04270707.1| hypothetical protein bcere0013_52680 [Bacillus cereus BDRD-ST26]
 gi|228641471|gb|EEK97777.1| hypothetical protein bcere0013_52680 [Bacillus cereus BDRD-ST26]
          Length = 344

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 117/355 (32%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKLIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------------- 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            SEL    ++    +++        + +        +FG+  L   +  +F ++      
Sbjct: 111 -SELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIV 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  +   ++         +   +   +          +IA+   ++   A W+ G 
Sbjct: 170 AFTAKFKESRLAIFYTEI----EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|126729981|ref|ZP_01745793.1| hypothetical protein SSE37_16423 [Sagittula stellata E-37]
 gi|126709361|gb|EBA08415.1| hypothetical protein SSE37_16423 [Sagittula stellata E-37]
          Length = 340

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 103/331 (31%), Gaps = 25/331 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +    ++  L     F APV   L++G    P+ +    +     +  A +A V  +
Sbjct: 17  LAIIATVALVAGLKSASDFAAPVALGLVVGVVLAPVVNRLS-RFGVPRSLSASLALVIAV 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L I+ +  L          L  ++    +           +  G          +    
Sbjct: 76  ALLILLVSALGPVL----SGLAEQMPKIQREVREWLDEAVRVVRG----------VDSIG 121

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                + +      +            +  ++    +  +  LFFF   G  I   L   
Sbjct: 122 REIEETLSEGGEEAVKQAMPSLVDALWMAPNFAAQSLVFLGTLFFFVLTGEDIYNAL--- 178

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +     ++  K +   F+ +T I    GL +  A  L G+P+ +  G    ++
Sbjct: 179 ------PHRAGSLKLADKAVSHYFITVTAINACLGLAVFGAMALLGLPNAMLWGGAAFLL 232

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             +    PI      +   +      +  L  L          + + P LVG  ++L  L
Sbjct: 233 NFVLYLGPIVMLISLLIAGVMNFSGASILLPMLAYLGLNMTEAQFVTPSLVGQQLRLNPL 292

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             F  ++ G+   G +G  +   ++     +
Sbjct: 293 VVFLSILFGLWLWGPIGGVVSLPVLVWAMTL 323


>gi|13475610|ref|NP_107177.1| hypothetical protein mlr6726 [Mesorhizobium loti MAFF303099]
 gi|14026366|dbj|BAB52963.1| mlr6726 [Mesorhizobium loti MAFF303099]
          Length = 334

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 101/329 (30%), Gaps = 23/329 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
                ++L +LYF +    P+  +L +   +WPI  +   +         +I  + V+ +
Sbjct: 5   IATGILVLAALYFARSILMPLAFSLFVIALAWPIQMALQRR--IPRLAALLITLLLVVLV 62

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++    + +      + L                WL                       
Sbjct: 63  IVIVGSAIVWGLGELSQWLFYNTGRLQAIYASWTDWLE-------------------GHG 103

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             +     +   I  +                  +   I +     +   + ++L S   
Sbjct: 104 IAIVSPLGELFSISRLVGLTHSLVTRLNSVAGFAVLTFIFVMLGLLEAEDLQRRLRSSLA 163

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I R +   IR   +  ++  I  GLV+ +   +AG+    A   I   +  
Sbjct: 164 QPQGEMLLHIGREIAGKIRRFMVVRSLACILTGLVVWAFTLVAGLELASAWAAIAFALNY 223

Query: 254 IPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP   P+  T       +   G+   A  +F+   +  F +   L PFL G  + +    
Sbjct: 224 IPFIGPLMATIFPTLFAIAQSGSWQLALIVFVGLNVIQFAIGSYLEPFLTGASLAISPFA 283

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             F +       G+ G FIG  ++ ++  
Sbjct: 284 VMFAVFFWSFMWGVPGAFIGVPILIVVVT 312


>gi|152977617|ref|YP_001377134.1| hypothetical protein Bcer98_3955 [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152026369|gb|ABS24139.1| protein of unknown function UPF0118 [Bacillus cytotoxicus NVH
           391-98]
          Length = 347

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 120/358 (33%), Gaps = 23/358 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +I+ ++ + LY LK  F  +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLILLLLALILYGLKSMFNLILITFILTYLMDRFQKFISRKLDHFMLIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     +  +    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIAFLYIMFVGGITITLFKYLPVLTVQISQLIYQFNVFLKNPPD------------- 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            +++    +     +++        + I        +FG+ FL   +  +F ++      
Sbjct: 111 -NDMIKASIHAINHMELSKYIGQGVDIIYKSIANVGKFGLQFLLSLILSLFFLLEKARIV 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  +   ++  +      +   +   +          +IAI   ++   A W+ G 
Sbjct: 170 AFTEKFKESKLAIFYNEI----EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G+I     + +  A+   +    L 
Sbjct: 226 PQLLGLSLMIFLLGLIPVAGVIISLFPLCMIAYNIGSITYVIYILIIVAVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   I++   +
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPVFMFLLDVLDVTSDEIEKGANE 343


>gi|313676979|ref|YP_004054975.1| hypothetical protein Ftrac_2891 [Marivirga tractuosa DSM 4126]
 gi|312943677|gb|ADR22867.1| protein of unknown function UPF0118 [Marivirga tractuosa DSM 4126]
          Length = 363

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 98/319 (30%), Gaps = 9/319 (2%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P+     S          +        +FI  ++      +  + E +  +   N   
Sbjct: 41  LRPLVGYLNSLYFYGYKLPKIFTIFISFSVFIGFIVLFVGLFIPLVSEQIQILSKLNYDN 100

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           +            ++  +           +  L E+ L            + F  I    
Sbjct: 101 LYNRITTPIQSIEVFLIDSIPNIGEEGFIIDRLKESILNFAQTVDFSYVLNNFISITGSI 160

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            ++++ ++   FF   +     ++   L  + +          + K++ +  LG+    I
Sbjct: 161 FVAVLAVLFITFFLLYEKGLARRKFIQLIPNKYFEVSIGAIYKIEKLLSNYLLGLLFQMI 220

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--------- 274
               +      + G+   V + V  A+  +IP   PI      I + +            
Sbjct: 221 SIFTIASVGLSILGIKYAVTIAVFAAVANLIPYAGPILGATFGIIVGVTTGGIFEFNNEL 280

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +F    +    A+     +  L+P +    +K   L  F  +  G    G++G+     +
Sbjct: 281 LFLVIKIVSVFAVVQVTDNIVLQPLIFSKSVKAHPLEIFVIIFAGASLAGVVGMVAAIPV 340

Query: 335 MALIAVIWKESIMAIKENK 353
             +I VI+ E     K+ K
Sbjct: 341 YTVIRVIFIELYQGYKQYK 359


>gi|219851885|ref|YP_002466317.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
 gi|219546144|gb|ACL16594.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
          Length = 345

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 51/352 (14%), Positives = 116/352 (32%), Gaps = 22/352 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  T++  +  +  +I  I LV+++        ++ A+ +     P+      + + S +
Sbjct: 4   MEITLITEEQKLWLLISAIFLVAVFAFWPLMTVIVWAVALAVAFMPLQKRLSRRLKPSIS 63

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +   +    + +V +                         +     +  +   +   
Sbjct: 64  AALITIMILCTVILVVSVSM--------------------NVLLANSGEIGSMITSLVMG 103

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                  S   S      + +    I  +           L   + ++   ++L      
Sbjct: 104 IQNAGISSFLPSSIASQLSSIPQMLIKSMLESIIGMTSNLLQLLIQVVIFFLSLSMLLYF 163

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G SI   L         +  +K++RI    I S  +     AI   ++    + + G  +
Sbjct: 164 GESIWGTLTCNLSPKLASAVEKMARISGDTIYSLIIIQISAAILSFILAIPFFMVLGYGN 223

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN--ATCLFLWGAIELFIVDKTLRP 298
            +    I  +  +IP         +    LI        A  +F+   +    +D   RP
Sbjct: 224 VILFATIIGLGMLIPLIGAQFIILLMTLYLIATGDMKGAAITVFIGYPLLSGWIDFYYRP 283

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            ++G  + +  +    G+  G+  MG+LG  +GPVL+AL+   +K     ++
Sbjct: 284 VMMGKRVAINPVLMMIGIFAGLPFMGILGFIVGPVLVALVVTGYKILEEEMR 335


>gi|126463756|ref|YP_001044869.1| hypothetical protein Rsph17029_2996 [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105567|gb|ABN78097.1| protein of unknown function UPF0118 [Rhodobacter sphaeroides ATCC
           17029]
          Length = 414

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 111/339 (32%), Gaps = 21/339 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
               G +  +   ++L  L   +     +  ++I+   +    +     +         +
Sbjct: 46  RVQTGALVIIAFAVVLALLVQAQFILISLAVSVILFSLTSDAIALVARVRFGPVKIPNWL 105

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A+   + L  + LL L    + ++  ++   +  ++        +    G          
Sbjct: 106 ASSLALLLLAIVLLSLAAVIVSQVNTVLLTALSYSEQAPAAVAAIFSWLG---------- 155

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                   K   E  L +     I  +             + + +I+ + F + +     
Sbjct: 156 --------KDAEEAVLSSLRAVEISGYLRTLAAQAGTLMQATVLVILFVGFLFAERVWFP 207

Query: 186 QQLDSLGEHLFP-AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +L +L  +       ++I   +   +    L  T+++   GL++       G+     L
Sbjct: 208 VKLLNLFGNPDRARRVEEIVSSIMHRVNRYLLVKTLVSAITGLLVWGVAMAFGLDLAAPL 267

Query: 245 GVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           G++T I+  IP    I      V +  +   ++  A  +     +  F+    L P L+G
Sbjct: 268 GMLTFILNFIPSLGSIVATLLIVLVTFVQTVDVSTALSVLALVGVIQFVCGNILDPMLMG 327

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             ++L        L       G+ G+F+   +M  + ++
Sbjct: 328 RALQLSSFGIIISLAFWGAIWGIPGMFLSVPIMVGLMIV 366


>gi|300855679|ref|YP_003780663.1| putative permease [Clostridium ljungdahlii DSM 13528]
 gi|300435794|gb|ADK15561.1| predicted permease [Clostridium ljungdahlii DSM 13528]
          Length = 342

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 54/347 (15%), Positives = 110/347 (31%), Gaps = 10/347 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +   + +   R +    I++ +Y+ K      L   +  +    + +  +   +  +   
Sbjct: 5   KEFFSKESTKRVLFFACIILVIYWSKSIMDLFLLTFLFSYIMNSLQNFLLKYIKNVTATK 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I T+ +  L  + ++ L    + ++      ++               I      S L
Sbjct: 65  EKITTIILYSLLFLLIVLLVVNYIPQLINQTKYMINHASQFQ--------IHPTSTNSHL 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     L  +       +G +   + A+  G   ++  +SI+  +  +   +    
Sbjct: 117 DIFQKYLVSMLGQIDIKSYLRSGFNISLQLATNVGKWSVNIFISIMLSLFFILGKHNIIE 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +  DS    L+        +              IIA    ++      +   P  V
Sbjct: 177 FLKKFKDSKVSGLYNYLCF-FGKNFLNSFGKVMQAQIIIAFFNTIISVIMLSIMNFPQLV 235

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            LG +  I+++IP    I     +S+     G       + +  AI   I    L P L+
Sbjct: 236 TLGFMIFILSLIPVAGVIISLIPLSMVAFSIGGFTKVIYVLIMVAIIHVIESYVLNPKLM 295

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
              +KLP   TF  L+     MG  G  IG  L   I  +    I  
Sbjct: 296 SSKVKLPIFFTFIILIVSEHIMGAWGFLIGIPLFMFILDLLDVKIHD 342


>gi|30265457|ref|NP_847834.1| hypothetical protein BA_5688 [Bacillus anthracis str. Ames]
 gi|47531020|ref|YP_022369.1| hypothetical protein GBAA_5688 [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188276|ref|YP_031529.1| hypothetical protein BAS5291 [Bacillus anthracis str. Sterne]
 gi|49480456|ref|YP_039428.1| membrane protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52145245|ref|YP_086702.1| membrane protein [Bacillus cereus E33L]
 gi|65317419|ref|ZP_00390378.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
 gi|118480467|ref|YP_897618.1| hypothetical protein BALH_4941 [Bacillus thuringiensis str. Al
           Hakam]
 gi|167636254|ref|ZP_02394557.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|167641447|ref|ZP_02399697.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|170689205|ref|ZP_02880402.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|170708676|ref|ZP_02899115.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|177651829|ref|ZP_02934412.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|218906619|ref|YP_002454453.1| hypothetical protein BCAH820_5533 [Bacillus cereus AH820]
 gi|228936720|ref|ZP_04099511.1| hypothetical protein bthur0009_51550 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228949160|ref|ZP_04111429.1| hypothetical protein bthur0007_52810 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229600969|ref|YP_002869648.1| hypothetical protein BAA_5718 [Bacillus anthracis str. A0248]
 gi|254687121|ref|ZP_05150979.1| hypothetical protein BantC_25223 [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724096|ref|ZP_05185881.1| hypothetical protein BantA1_16773 [Bacillus anthracis str. A1055]
 gi|254735558|ref|ZP_05193265.1| hypothetical protein BantWNA_10409 [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742178|ref|ZP_05199865.1| hypothetical protein BantKB_14393 [Bacillus anthracis str. Kruger
           B]
 gi|254755912|ref|ZP_05207944.1| hypothetical protein BantV_25864 [Bacillus anthracis str. Vollum]
 gi|254761624|ref|ZP_05213644.1| hypothetical protein BantA9_25203 [Bacillus anthracis str.
           Australia 94]
 gi|301056903|ref|YP_003795114.1| hypothetical protein BACI_c54310 [Bacillus anthracis CI]
 gi|30260135|gb|AAP29320.1| putative membrane protein [Bacillus anthracis str. Ames]
 gi|47506168|gb|AAT34844.1| putative membrane protein [Bacillus anthracis str. 'Ames Ancestor']
 gi|49182203|gb|AAT57579.1| membrane protein, putative [Bacillus anthracis str. Sterne]
 gi|49332012|gb|AAT62658.1| membrane protein [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51978714|gb|AAU20264.1| membrane protein [Bacillus cereus E33L]
 gi|118419692|gb|ABK88111.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
           Hakam]
 gi|167510622|gb|EDR86018.1| putative membrane protein [Bacillus anthracis str. A0193]
 gi|167528369|gb|EDR91140.1| putative membrane protein [Bacillus anthracis str. A0442]
 gi|170126458|gb|EDS95346.1| putative membrane protein [Bacillus anthracis str. A0389]
 gi|170666848|gb|EDT17614.1| putative membrane protein [Bacillus anthracis str. A0465]
 gi|172082533|gb|EDT67597.1| putative membrane protein [Bacillus anthracis str. A0174]
 gi|218535526|gb|ACK87924.1| putative membrane protein [Bacillus cereus AH820]
 gi|228810505|gb|EEM56857.1| hypothetical protein bthur0007_52810 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822929|gb|EEM68770.1| hypothetical protein bthur0009_51550 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229265377|gb|ACQ47014.1| putative membrane protein [Bacillus anthracis str. A0248]
 gi|300379072|gb|ADK07976.1| putative membrane protein [Bacillus cereus biovar anthracis str.
           CI]
          Length = 344

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKLIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IA+   ++   A W+ G 
Sbjct: 178 SRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|193782699|ref|NP_436165.2| hypothetical protein SMa1676 [Sinorhizobium meliloti 1021]
 gi|307308363|ref|ZP_07588068.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307321177|ref|ZP_07600580.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|193073155|gb|AAK65577.2| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306893168|gb|EFN23951.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306901164|gb|EFN31771.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 352

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 97/314 (30%), Gaps = 23/314 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            FAPV  AL I    WP      +          +I+ + V+   +     + +      
Sbjct: 31  IFAPVAFALFIIALVWPTQCRLQAML--PRYLALIISFLLVVLAIVAFGGLIAWAFGHVG 88

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           + +++      Q    V  WL +    +                      + +  G+ ++
Sbjct: 89  RWIIADAARFQQLYDQVRLWLEEHGVAVGVL-------------------WSENFGVGWV 129

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                             +  ++ +     +     +++++L      A   + S+    
Sbjct: 130 LHTVQAVSGRLNSTFSFWLIALVYVLLGLMEMDDFGRRIEALRNRTASALLLRGSQQTAM 189

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSI 267
            IR   +  T++++  GL++       G+      G I   +  IP   P+         
Sbjct: 190 KIRRYMMIRTVMSVVTGLLVWIFTRAVGLSLAEEWGFIAFALNYIPFLGPLLATLFPTLF 249

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+  G +     +F    +  F+V   + P   G  + +  +   F +       G+ G
Sbjct: 250 ALIQFGTVETVLIVFTGLNLIQFVVSSYIEPRASGSALSMSPVMVLFSVFLWGYLWGIFG 309

Query: 328 LFIGPVLMALIAVI 341
            FIG  +   +   
Sbjct: 310 AFIGVPITIALLTF 323


>gi|255071901|ref|XP_002499625.1| predicted protein [Micromonas sp. RCC299]
 gi|226514887|gb|ACO60883.1| predicted protein [Micromonas sp. RCC299]
          Length = 683

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/361 (13%), Positives = 103/361 (28%), Gaps = 41/361 (11%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSS----------FISKKEESSTF 61
           +  +    +   L  L     P++ A+ +     P                    ++   
Sbjct: 205 VSIISACCLCWFLEHLDYLLRPLVFAVGLSLILRPFVDFASDWRYQQAKLRRWNVQTPWH 264

Query: 62  LAVIAT--------VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
             V+             + + +        Y   +      K    N   I     L+D 
Sbjct: 265 PRVVVVPRALALVLALSLVMLVSATFIWALYLSEQWIAFHWKDKSWNDRFIDRVNDLADF 324

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
              +    L     +      + S          F  +FA+       D  +++ +++  
Sbjct: 325 TDRIALRLLKRDDFALASWHTLQSRVESTLKDETFWTQFANNLFGYLGDAAVTMFYVLFL 384

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWK-KISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                            L     P   + +I R +   ++   L M  ++     ++G+ 
Sbjct: 385 -----------------LAPPRVPTRLRSQIVRRIHGAVKKFVLIMVALSAVRATMVGTL 427

Query: 233 YWLAGVPSHVA--LGVITAIMAMIPGGAPISFT---AVSIYLLIKGNIFNATCLFLWGAI 287
            +  GVP  +A  + +++  +  IP    +  T      I LL   +     C     A 
Sbjct: 428 IYACGVPGSLAGSIAIVSFWLFFIPNLGSVVATAIPLPLIVLLPDLSNAQRWCALFVPAF 487

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
             F+V   L P +    + L  +     LV      G +G  +   +M  + +  +E   
Sbjct: 488 GSFVVGDILGPTVYRRGLGLNEVVILLSLVFWFSVWGGIGAVLAVPIMCAVRISLEEIPH 547

Query: 348 A 348
            
Sbjct: 548 R 548


>gi|325290750|ref|YP_004266931.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966151|gb|ADY56930.1| sporulation integral membrane protein YtvI [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 368

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 116/343 (33%), Gaps = 2/343 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   +    I   L     FF P + A +      P  +  ++K     +    +  + 
Sbjct: 23  TVGILLATVAIPYVLMKTFPFFLPFILAYVTALFLEPAIAFMVNKWSFQRSLAVTLIYLI 82

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVL--ANQHGIPVPRWLSDIPGGMWASELWTKHL 127
            + +  V   F+ +   LE+  ++S                      G  ++       +
Sbjct: 83  FVGILAVLAYFITHKIYLEILNVISYFQEHSIQTLSNQFLLTWKGYVGNTYSLLPAEVII 142

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              + +     +    N    I  + S F +   ++    +   I++F F +   S+   
Sbjct: 143 RINEGVSQFVNSLASLNIAANIVAYTSAFSLKIPNFFFDSLIYFISVFLFCQTLTSMHSW 202

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  L  +        +   + + +    +   I++    LV      L G+   V+LG I
Sbjct: 203 LFGLFRYSSKKKIIVVLSDLRRALLGFIIAHFILSAVTLLVSFIGLTLLGIKFKVSLGFI 262

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I   IP     +   +   L             L   +   ++ K + P ++   + L
Sbjct: 263 IFIFDFIPIIGISTIYFIWALLSFIQGEIFLGTGLLVLLVLAIVIRKIIEPKVLSEQLGL 322

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
             L T   +  G++T+G++G+ + P+ + LI  + K  ++  K
Sbjct: 323 SALTTLICIWVGLKTLGIVGVILFPLTLILIKTLIKVGLIDYK 365


>gi|239617723|ref|YP_002941045.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
 gi|239506554|gb|ACR80041.1| protein of unknown function UPF0118 [Kosmotoga olearia TBF 19.5.1]
          Length = 329

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/340 (12%), Positives = 98/340 (28%), Gaps = 22/340 (6%)

Query: 15  MIMFIILVSLYFLKGFFAP-----VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I  +    +YFL  F  P     +  A +I          F  K  +       +  V 
Sbjct: 5   AIWILSYAGIYFLSLFIFPNTSRVLSMAFLIALLLNYPSRFFQKKTLKR------LTVVM 58

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V    +V   +LFY     +   V +   +    I                 +       
Sbjct: 59  VSLGLVVLFAYLFYTFPSMISMSVDQFKESFNKLI----------IDNPLESIMADLPDF 108

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            Q           +   + +    +       ++   ++ +I+A  +    G ++ + + 
Sbjct: 109 IQGSINDFFGNFGSLMSNVLVSIVTYISTHIANWITFVVLLIVAAIYILSRGKNVDRIIP 168

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L          +  +     + +   G  I+A+  G+ +G +  + G+     LG++  
Sbjct: 169 KLFPKCNTKKIMEFWKGFLDDLETYIGGQLIVALCIGVFIGISTAIFGIQGSYFLGLLAG 228

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I  +IP    I      +             +  +       +    L P +V   +K  
Sbjct: 229 ITNLIPFLGVIITAIPMMVFGYTSRGLLGVGIALIILVAANQMEMWFLSPKIVSNQLKFN 288

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           +      L+      G  G+ +    +  I   W   ++ 
Sbjct: 289 WFVVLIALLAFSELFGAFGIILTVPTIVFIRRFWNMFVLK 328


>gi|213580402|ref|ZP_03362228.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 194

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 3/188 (1%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             + ++ + + +FF  +D   +   +  +          ++   + + I +   G  +  
Sbjct: 1   MAVYLVLVPLMVFFLVKDKEQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEM 59

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATC 280
           +  G+     + L G+   + L V+     +IP       T   +   L   G       
Sbjct: 60  VVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWS 119

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            F    I   +    L P L    + L  L     +V      G  G+F    L  LI  
Sbjct: 120 CFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKA 179

Query: 341 IWKESIMA 348
           +       
Sbjct: 180 VVHAWPDG 187


>gi|161170252|gb|ABX59222.1| permease [uncultured marine bacterium EB000_55B11]
 gi|297183781|gb|ADI19904.1| hypothetical protein [uncultured marine bacterium EB000_55B11]
          Length = 345

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 89/279 (31%), Gaps = 17/279 (6%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ +F+  +  + +     ++  +S++ +   +   V   L++  G   A  L     
Sbjct: 65  LVVLLIFVSIVALISFMISNNIEYTLSQLPIYQTNLQIVVDNLAEGFGLSNAPSLNKIIE 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  +S+ + S  F     I  +                      +   F   +  + + +
Sbjct: 125 NWWKSIDLQSFAFRAFGSISSVGSILF--------------MTALYAGFLLTEVNNFNAK 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +             +I   V   I       TII I    +     W+ G+ S V   V+
Sbjct: 171 ISKALGGDA-TQALEIISKVNNRIGVYLTIKTIINIILASISFLIMWVMGIDSAVFWAVM 229

Query: 248 TAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              +  IP           V + L   G++  A    +        V   L P ++G  +
Sbjct: 230 IGFLNYIPYVGSAIGVGFPVGLALAQFGSLQWAILALVLLMAVQTYVGNILEPKMIGKSV 289

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L        LV      GL G  +   L +++ ++  E
Sbjct: 290 NLSSFVVLLALVFWTTIWGLPGAILSIPLTSVLVILLAE 328


>gi|240145907|ref|ZP_04744508.1| putative transporter [Roseburia intestinalis L1-82]
 gi|257201972|gb|EEV00257.1| putative transporter [Roseburia intestinalis L1-82]
          Length = 254

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 77/214 (35%)

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               +  + +   L +   D +    S        + + ++  +IA  F   +   I   
Sbjct: 31  GEESAQTLKNAGKLMSGISDGVIDGVSGMAAGIPGFFMKLLIAVIATVFMELEFPEIKAF 90

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L       +   ++     V   +    L   +I       L +  +L G+ +  A+  I
Sbjct: 91  LKRQIPAEYQRAFRDGKNYVTGTMGKCILSYCLIFGMTFAELTAGLFLLGIKNAFAIAFI 150

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            A++ ++P     +       L       +         + + +V   + P LVG  + L
Sbjct: 151 IAVLDILPVLGTGTVLIPWAVLAFASGRISTGVGVFGLYLVITVVRNLIEPKLVGKQMGL 210

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             +     ++ G++  G++GLF+ P+L++ +  +
Sbjct: 211 SPVIMLPCMLIGLKFFGIIGLFVVPLLVSFLKQL 244


>gi|86149982|ref|ZP_01068210.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|86152766|ref|ZP_01070971.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|88596022|ref|ZP_01099259.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|121612486|ref|YP_001001021.1| hypothetical protein CJJ81176_1365 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005924|ref|ZP_02271682.1| hypothetical protein Cjejjejuni_07165 [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|218562972|ref|YP_002344751.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|85839428|gb|EAQ56689.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|85843651|gb|EAQ60861.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|87249909|gb|EAQ72868.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|88190863|gb|EAQ94835.1| membrane protein, putative [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|112360678|emb|CAL35475.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|284926583|gb|ADC28935.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315929282|gb|EFV08495.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
           305]
          Length = 347

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 115/323 (35%), Gaps = 21/323 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+           +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 198 VLYSMVIVAIFQGALFGLITIFYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASN 257

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 258 NLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 317

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
             G+ +GP ++       +  ++
Sbjct: 318 FWGIILGPAILTFFVSTLRMYVI 340


>gi|256848585|ref|ZP_05554026.1| permease [Lactobacillus coleohominis 101-4-CHN]
 gi|256714637|gb|EEU29617.1| permease [Lactobacillus coleohominis 101-4-CHN]
          Length = 346

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/334 (12%), Positives = 105/334 (31%), Gaps = 19/334 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVS 69
           + R +++ +++  LY  +G    +L   I  +              +   T + ++  + 
Sbjct: 14  LHRTVVLLMLIAVLYVARGMMNTILLTFIFTYLIVHWIRLVQRWIPKLPVTVIVLVTYIL 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++      +       + E+ ++V  ++   Q                   ++       
Sbjct: 74  LIWGIYYVVTDYLPMIINELVKMVDSLIKFYQ-----------------GDDMKWFMRYV 116

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            + +   +      +G+ F     +R G + +   +S+I          +      Q L+
Sbjct: 117 NRYVSTATIIEQAKHGMSFAVDTLTRIGTLTISLFMSLILSFFYTIELKQMNEFSHQFLE 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +   +          +               IAI    +         +P   ALG++  
Sbjct: 177 TKYLNWLFGDIYYFGKTFVNTFGVVLEAQFFIAICNTALTMICLSFMKMPQIFALGLMVF 236

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I++++P    I     + +     G I +   + +   +   +    L P  +    +LP
Sbjct: 237 ILSLVPVAGVIISLIPLCLVGYQSGGIRDVIYIIIMIMVIHALEAYVLNPKFMSSRTELP 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              TF  L+      G  GL +G  +   +  I+
Sbjct: 297 IFYTFVVLLVAEHLWGTWGLIVGVPVFTFLLDIF 330


>gi|57238407|ref|YP_179538.1| hypothetical protein CJE1555 [Campylobacter jejuni RM1221]
 gi|148926718|ref|ZP_01810398.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|57167211|gb|AAW35990.1| membrane protein, putative [Campylobacter jejuni RM1221]
 gi|145845082|gb|EDK22178.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8486]
 gi|315058837|gb|ADT73166.1| Acid membrane antigen A [Campylobacter jejuni subsp. jejuni S3]
          Length = 347

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 115/323 (35%), Gaps = 21/323 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S F      + + ++ + +  FF    G  +   L S+           +   V  V+  
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAV 197

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 198 VLYSMVIVAIFQGALFGLITIFYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASN 257

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 258 NLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 317

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
             G+ +GP ++       +  ++
Sbjct: 318 FWGIILGPAILTFFVSTLRMYVI 340


>gi|229164384|ref|ZP_04292314.1| hypothetical protein bcere0009_51420 [Bacillus cereus R309803]
 gi|228619127|gb|EEK76023.1| hypothetical protein bcere0009_51420 [Bacillus cereus R309803]
          Length = 344

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/355 (11%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKLIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IA+   ++   A W+ G 
Sbjct: 178 SRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|312128438|ref|YP_003993312.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778457|gb|ADQ07943.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 373

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 104/343 (30%), Gaps = 13/343 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           I   +I   I    Y +K F          F PV+  L I   S P+      + + S T
Sbjct: 14  IYVILISAFIFSCAYLIKTFDLFVRFVIKAFIPVIIGLFIAEVSEPLLKYLEKR-KVSRT 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + +  +    L    Y  + E   LV+ +   +   I               S
Sbjct: 73  ISAILILIVLNIILGFMLAEGIYILVNECMSLVTSLQNIDYDKIYQALDKLFASVKNIYS 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    ++  QS        L       +     +     L       F +++ FFF RD
Sbjct: 133 GLPGPIVNFIQSGVDELTNVLNQIATMSL--KVIKVIPATLKGITVWFFSVLSAFFFMRD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L              +   V   +        I+AI   L       +   P 
Sbjct: 191 RHKMRAWLIQNFSVQLYRELSSVIFKVIDSVVDYAKSQIILAILMFLTGIIGLSIIKAPY 250

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  ++++IP           I               L   + +  + +     +
Sbjct: 251 FLVISLLLGLLSIIPIVGSGIILLPWIVGSFIAGDTKFGIKLLIVYLIILGIREFASIKI 310

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 311 VASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|261402505|ref|YP_003246729.1| protein of unknown function UPF0118 [Methanocaldococcus vulcanius
           M7]
 gi|261369498|gb|ACX72247.1| protein of unknown function UPF0118 [Methanocaldococcus vulcanius
           M7]
          Length = 331

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 107/316 (33%), Gaps = 22/316 (6%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
            F      A    + + PIY+  + K   + T  A +A    +    +  ++ F   +  
Sbjct: 27  PFIDTFAYACAFAYMALPIYNLLVKKL--NRTVSAALAIGIYLIPITLITIYAFSTFLN- 83

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
                            +   +       +   +    L           T      I +
Sbjct: 84  -----------------IVLSIDPNSINQYFLSVLNNPLLDRIITNDEMITKYVNELIKY 126

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                S   +      +  I ++   F+F RDG+     + S     +    +   + + 
Sbjct: 127 AISQLSGKIIDVGYLAIKTILVLFITFYFLRDGYKFKDVVISFTPENYKEKMRIYLQYLH 186

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS-I 267
              ++ F+    ++I   ++    Y +AGV       +IT + A++P            I
Sbjct: 187 DSYKNLFISCVSLSIIITILSYIGYLIAGVKYAELFAIITGVFALLPILGGWMVYIAIAI 246

Query: 268 YLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           Y  +  N   A  +F++G + L I  D  +RP++V   + +  +      +    ++GL 
Sbjct: 247 YFFLTHNYAKAIFIFIYGELFLSIAPDFVIRPYIVKKEVDIHPVLVVVAFLIAPLSLGLS 306

Query: 327 GLFIGPVLMALIAVIW 342
           G  IGP+++  +   +
Sbjct: 307 GFAIGPLVVGALNAFY 322


>gi|242398490|ref|YP_002993914.1| hypothetical protein TSIB_0499 [Thermococcus sibiricus MM 739]
 gi|242264883|gb|ACS89565.1| hypothetical protein TSIB_0499 [Thermococcus sibiricus MM 739]
          Length = 329

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 121/352 (34%), Gaps = 29/352 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     I   + + I+ V    ++     ++ AL + +   P ++    K        A+
Sbjct: 1   MRTEHVIWFVVSIIILFVVWKTVEPLITSIIFALTVAYILHPAHTRLAQKIGSRE--SAI 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + +  +  L +  +  +  +       LV+ +  + +  I +                  
Sbjct: 59  VFSAIMSLLLVGFIFGVALWFRDVTGSLVNYINESLEWFISL------------------ 100

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                       S T L     + +  +   + +      L  I  I+  +       S+
Sbjct: 101 ----DLPPDIAKSATILFERVSEKLSEYLLSYTLSIPKLLLQAIIFIVVFYGILIHSHSL 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSH 241
           S +L SL          ++       + +      ++++ +G++L   +++  V      
Sbjct: 157 SAELYSLLPEERRDLGIELIEKARDTLNAILRTWLMLSVSKGIILTLGFYVFRVADLSGS 216

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG--AIELFIVDKTLRPF 299
           +A G++  ++ ++P         V    L+      A  +F      +     D T+RP 
Sbjct: 217 IAAGIVCVVLELLPVIGGWLVWLVGAIYLLTQGQIFAGIMFAIYGALLISPGPDITIRPK 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           LV    K+       G+ GG+   G+ G+ IGPV + L+  + +E     +E
Sbjct: 277 LVAEGAKMNSALALIGIFGGIMAFGIKGIVIGPVALGLLLTLLEEWKEQKRE 328


>gi|227551511|ref|ZP_03981560.1| permease [Enterococcus faecium TX1330]
 gi|227179346|gb|EEI60318.1| permease [Enterococcus faecium TX1330]
          Length = 300

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 90/310 (29%), Gaps = 17/310 (5%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           +           +  LA++    ++ L  +         + +  +++  V+   +H    
Sbjct: 4   LVQIIQRFVRIPTGILAIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKD 63

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
              +            + + L +  S+ +     +    + F   F   F  +       
Sbjct: 64  ADPVLQYIHNYIERNDFFEQLQNGASIALGYLQDIGKLAVAFAMSFILSFFFMIEKQKTI 123

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
               +     F      +    D                              IIA+   
Sbjct: 124 FFSRLFLKSEFSWFFQDLYYFADKFV----------------NTFGLVLEAQFIIALLNT 167

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWG 285
           L+   A    G    ++L ++  I+++IP    I     +S     +G I +   + +  
Sbjct: 168 LLTTIALAAFGFHQLLSLAIMIFILSLIPVAGVIISCIPLSFIAYSQGGIRDVVYILMTI 227

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   I    L P L+     LP   TF  L+   R  G+ GL +G  +      + K  
Sbjct: 228 LVVHLIESYVLNPKLMSSKTDLPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLKVK 287

Query: 346 IMAIKENKEK 355
            +     +E 
Sbjct: 288 KIPNHSPRET 297


>gi|121997925|ref|YP_001002712.1| hypothetical protein Hhal_1134 [Halorhodospira halophila SL1]
 gi|121589330|gb|ABM61910.1| protein of unknown function UPF0118 [Halorhodospira halophila SL1]
          Length = 361

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 108/336 (32%), Gaps = 21/336 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++    + IIL  L  + G   P+L A  +   S    +    +        AV+A + 
Sbjct: 26  WLVGGAAVVIILAGLQAVSGIVNPLLLAAFLAIASATPLNWMQRRGVP-----AVLAVMI 80

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +     +    LF+     ++ + ++     +    V   L +    M            
Sbjct: 81  LFLGVGLLFFLLFHALRGAVETMATQAPEYQEQLTIVFGQLREYVVSMGVPP-------- 132

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      +    +  +   A+        +  +   +++A  F   +  ++  +L 
Sbjct: 133 -----ESLPEQIPLPAVGTLTDAAATVASGIGQFTAATFLVLLAFMFLLLEESTLPGKLS 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                      +  +R   + +       +  +   G+++G+  WL GV   +  G+   
Sbjct: 188 VAFPASR--RARVRTRRFLRAVDRYIFIKSATSTLTGVIIGTGLWLIGVDFPILWGIFAG 245

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  IP    I   A ++ + L+ G + +A             +     P L+G  + L 
Sbjct: 246 LLNFIPTVGSIIAAAPAVAVALLGGGLLDAVLTVALYVAVNVAIGSITEPRLMGRTLGLS 305

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L     L+      G +G+ +   L  +  +  + 
Sbjct: 306 PLVVLISLMVWGWVFGPVGMLLSIPLTMIAKLALEA 341


>gi|81427661|ref|YP_394658.1| putative transport protein [Lactobacillus sakei subsp. sakei 23K]
 gi|78609300|emb|CAI54346.1| Putative transport protein [Lactobacillus sakei subsp. sakei 23K]
          Length = 337

 Score = 81.2 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 94/343 (27%), Gaps = 17/343 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           + +  +  + + R +++  ++  ++ ++     +L   I  F    +             
Sbjct: 3   LYQRFVANEQLRRLVVLMGMIGVIFAVRSMMNIILLTFIFTFLVTQLVRHVQRYVRIPPA 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            + V   + V+ L  + +         +  +L   V    Q           +       
Sbjct: 63  AVVVPLYILVILLVYLGVTIYVPQIAKQTIKLGESVYNFYQSPSFDANKFMQLISQYMKQ 122

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T  L H  S  +   T + T G+  +  F                            
Sbjct: 123 FNLTDQLKHGVSTLVNYITGIGTMGVTIVLSFILS----------------FFYTIELDK 166

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                                  ++               IA+   ++      +  +P+
Sbjct: 167 LPQFGGLFLKSTYGWLFQDIAYFAKKFVNTFGVVIEAQIFIAVVNTVLTTITLTVMKMPN 226

Query: 241 HVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
             +L ++  +++M+P    I     + I     G +     + +   +   +    L P 
Sbjct: 227 IPSLAIMIFLLSMVPVAGVILSCIPLCIIAFSVGGVQYVIYILVMITVIHALEAYVLNPR 286

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +    +LP   TF  L    R +G  GL +G  +      + 
Sbjct: 287 FMSSKTQLPIFFTFVVLFVAERFLGTWGLIVGLPIFTFFLDVL 329


>gi|261839604|gb|ACX99369.1| membrane protein [Helicobacter pylori 52]
          Length = 348

 Score = 81.2 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 127/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F   VL A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDVLIAGLLCVGFFQVKVFLDKRFLN--LISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F  T+   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSATSITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITIILEGVAFGLMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|95930357|ref|ZP_01313094.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
 gi|95133609|gb|EAT15271.1| protein of unknown function UPF0118 [Desulfuromonas acetoxidans DSM
           684]
          Length = 337

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 109/336 (32%), Gaps = 22/336 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +  +  + II+  L   +    P L A  I     P       +    ++    I   
Sbjct: 10  RILTAFASLIIIIAGLKSAQDLIVPFLLAAFIAILCLPSLHWLERR-HLPTSLNICIVIS 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           + +   ++  +F+        + L +     +     +  WL+                 
Sbjct: 69  AALLTGLLLAVFVGSSLHDFSRTLPTYQARLHDQTRTLFDWLNQ--------------HG 114

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S +I+ + F  +  +       S  G +  D  L ++ +I  LF        + Q L
Sbjct: 115 IDISSQIVLDYFDPSAAMKIAANTLSGVGAVLTDGFLILLTVIFILFEASAMPKKLKQAL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +      P         + + ++   +  T +++  G  +     +  V   +  G++ 
Sbjct: 175 KN------PEQSFAQFTRITQSVQGYLVIKTAVSLLTGAAVIIWLIILDVDYPILWGLLA 228

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            ++  +P    I       +  +++  +  A  +     I   +V   + P  +G  + L
Sbjct: 229 FLLNFVPNIGSIIASIPAILLAIVQHGMGTALLVAGGYVIVNVVVGNIIEPRFMGKQLGL 288

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             L     L+     +G +G+ +   L  ++ +  +
Sbjct: 289 SPLVVLLSLIIWGWVLGPVGMLLSVPLTMIVKIALE 324


>gi|321314121|ref|YP_004206408.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
 gi|320020395|gb|ADV95381.1| putative integral inner membrane protein [Bacillus subtilis BSn5]
          Length = 350

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 108/355 (30%), Gaps = 23/355 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY----SSFISKKEESSTFLAVI 65
           G+ R+ I  ++   LY  K     +L   I  F    +              S   +   
Sbjct: 12  GVRRFSIFVVLTGVLYLFKSMINLILLTFIFTFLMDRLELVVRQFVSQFFRVSQRVVITF 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  L  V     +     ++++LV ++     H   +P                  
Sbjct: 72  LYMLLAVLLTVGGFVFYPVVAAQIQQLVKQIKHIAYHPDSIP-----------------F 114

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                     ++ +     G + +  + +      L   +++I  +  LF   R    ++
Sbjct: 115 FDEITSVFGDINISSYVKEGFNVVYTYLADISTFGLQVVMALILSMFFLFEKKRLSEFMA 174

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +   S     +            +          IIA+   ++   A W+   P    L 
Sbjct: 175 KFKTSKLRVFYEEI-AFFGSKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLS 233

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++   + +IP     IS   +SI     G       + L       I    L P L+   
Sbjct: 234 IMVFFLGLIPVAGVVISLIPLSIIAYSTGGGMYVLYIVLVIFAIHAIETYFLNPKLMSAK 293

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            +LP   TF  L+      G+ GL IG  +   +  I   +    +    + +S+
Sbjct: 294 TELPIFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVTNKEDRSKGHRENSD 348


>gi|219853032|ref|YP_002467464.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
 gi|219547291|gb|ACL17741.1| protein of unknown function UPF0118 [Methanosphaerula palustris
           E1-9c]
          Length = 345

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 51/360 (14%), Positives = 116/360 (32%), Gaps = 22/360 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M  + ++    +  +I  I +  +          + A+ +     P++  F  + + S  
Sbjct: 1   MEISGISEDQKLSLLIGAIFIAVIIAFWPLMTVFVWAVALAVALMPLHKRFSRRVKPS-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++ T  V+ +  + +         ++                   ++  +   +   
Sbjct: 59  LSAMLITFGVILVTGLVVSSATIVIYADI------------------EYIGVMAATLVKG 100

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
              T   +   +      + +    I+ +               L +I + + L      
Sbjct: 101 FSRTVFATFLPTFTADQLSNMPHTLIEMVLNTLLSLTANPGLLLLQVIILFLTLSMLIYY 160

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I   +             +IS I    I S  +     A+   L+    + L G   
Sbjct: 161 GEQIWTSVTRNLSPKLSTVLGRISEITGNTIYSLIVIQISAALLSFLLAIPFFTLLGYGH 220

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGA-IELFIVDKTLRP 298
            +    +     +IP     +      +Y++  G+I +A      G  +    +D   RP
Sbjct: 221 ELLFATMIGFAMLIPLVGAQLCLLFFILYMIALGDIRSAVITMFIGYPLLSGWIDFYYRP 280

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            ++   + +  +    G+  GV  MG++G  +GPVLM+L    +   I   +   E+  S
Sbjct: 281 VMMRRRVAVHPVFMIIGIFAGVPFMGIVGFILGPVLMSLAVTGYSIYIEQTRVPAEEQES 340


>gi|146295508|ref|YP_001179279.1| Beta tubulin, autoregulation binding site [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409084|gb|ABP66088.1| Beta tubulin, autoregulation binding site [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 373

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/322 (16%), Positives = 101/322 (31%), Gaps = 3/322 (0%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           + + F+   F PVL  L I     P+      ++  + T  A++  V +  L    L   
Sbjct: 35  LFIRFILKAFIPVLIGLFIATVFEPVLKYLEKRR-INRTVSAILILVILNVLLAFMLAEG 93

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
            Y  + E   LVS +   +   I               ++L    +S  QS        L
Sbjct: 94  IYILVNECLGLVSNLQNIDYDKIYATLNHLFSSVKSIYTDLPRPIVSFIQSGVNEIANIL 153

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                  +           L       F +++ FFF RD   +   L             
Sbjct: 154 NQVATMSL--KVINVIPATLKGITIWFFSVLSSFFFMRDRHKMRAWLIQNFSAQVYKEMS 211

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++  V   +        I+AI   L       +   P  + + ++  ++++IP      
Sbjct: 212 SVAFKVIDSVVDYAKSQIILAILMFLSGLIGLSIIKAPYFLVISLLLGLLSIIPIIGSGI 271

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                I         +     L   + +  + +     +V   + +    T   +  GV 
Sbjct: 272 ILLPWIIGSFIAGNTSFGIKLLIVYLIILGLREFASIKIVASQVGISTFTTLVSIYAGVE 331

Query: 322 TMGLLGLFIGPVLMALIAVIWK 343
             G  G  IGP+L+  +  +++
Sbjct: 332 IFGAWGFIIGPLLVVFLKAVFE 353


>gi|317180338|dbj|BAJ58124.1| membrane protein [Helicobacter pylori F32]
          Length = 348

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 126/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F   VL A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDVLIAGLLCVGFFQVKVFLDKRFLN--LISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|168335194|ref|ZP_02693299.1| hypothetical protein Epulo_09133 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 389

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 112/330 (33%), Gaps = 23/330 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGF--------------FAPVLSALIIGFTSWPIYSSF---I 52
            ++  +I  +I + +                     +P+L  L++ +   P+   +   +
Sbjct: 16  VVISIVITILISICMIKFIPIMGWLHWLFDRTVDLLSPLLIGLVLAYLMEPVVDLYISSL 75

Query: 53  SKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK-----VVLANQHGIPVP 107
           S+   S++ +  I+T   +   +  +       ++ M++++ K     +       I   
Sbjct: 76  SRPHLSASRVRGISTFFAILTIVAIIGLFVLMIIMNMQQVIHKTDIKGLSQTINAYISYF 135

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
           +  ++      A++  +       +    +     T        + +  G   +D    +
Sbjct: 136 QATAETLVNQLATDEMSMKAREILTTIYTTINSWATMFGQISMTWVADIGKNLIDIVFGV 195

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I  I  +    +    ++  L  +    +      I R +  V+     G  + A+   +
Sbjct: 196 ILAIYIMKDKPKLVKIVNNILSVIFTPKWYKRVTSIGRDLNSVLTGYVRGQILDALIMAV 255

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF-NATCLFLWGA 286
           ++G    L  +   V +GV++ +  +IP   P+    ++  L   G     A    L   
Sbjct: 256 LVGIGLSLIXLDFAVIIGVVSGVFNIIPYFGPVVGLLLAGILGAIGGGIQQAIYAMLIVF 315

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           +   I    + P ++G  +KL  +     +
Sbjct: 316 VLQQIDGFIIVPKILGTNVKLHPIVVLLAI 345


>gi|205356191|ref|ZP_03222958.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346034|gb|EDZ32670.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 312

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 111/317 (35%), Gaps = 21/317 (6%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           +   +  I + F++  +      +++ T  ++ LF  P ++        +K     +V  
Sbjct: 1   MAVATSNINAKFLNLTKGHKFLASILTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQ 60

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
               +             +   L          +K    +    +    I  +AS F   
Sbjct: 61  TLDYVK-----------NYQFTLPESFNFLEPKIKEFLASVDLNSISKQILSYASSFTKS 109

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
              + + ++ + +  FF    G  +   L S+           +   V  V+      M 
Sbjct: 110 GAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAVVLYSMV 168

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           I+AI +G + G      G    +   +      +   G  + +  VS+Y     N+ +A 
Sbjct: 169 IVAIFQGALFGLITMFYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSAL 228

Query: 280 CLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +
Sbjct: 229 VIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIIL 288

Query: 331 GPVLMALIAVIWKESIM 347
           GP ++       +  ++
Sbjct: 289 GPAILTFFVSTLRMYVI 305


>gi|47092709|ref|ZP_00230495.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|47018897|gb|EAL09644.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
          Length = 333

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 100/336 (29%), Gaps = 25/336 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R  +  +I   LY L+     +L   I  +    + +  + +       + ++  V +
Sbjct: 1   MRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVLLLYVLI 60

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + I   +        ++ +LV                                +    
Sbjct: 61  AAVIIFVFVKYIPVLADQINQLVKFGNTFLTT---------------------DSNNDFI 99

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +  L+  F      +        +        +++   ++   FF      +    + 
Sbjct: 100 NYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHLVSFTNQ 159

Query: 191 LGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                    ++++                   IIA+   ++   A W+ G P  + L ++
Sbjct: 160 FSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFPQLMTLSIM 219

Query: 248 TAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             ++ +IP    I     ++I     G +     + +   I   +    L P L+     
Sbjct: 220 VFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKLMSAKTN 279

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 280 LPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 315


>gi|229550145|ref|ZP_04438870.1| permease [Enterococcus faecalis ATCC 29200]
 gi|293383073|ref|ZP_06628991.1| putative membrane protein [Enterococcus faecalis R712]
 gi|293387774|ref|ZP_06632318.1| putative membrane protein [Enterococcus faecalis S613]
 gi|307271146|ref|ZP_07552429.1| hypothetical protein HMPREF9498_03232 [Enterococcus faecalis
           TX4248]
 gi|307291349|ref|ZP_07571233.1| hypothetical protein HMPREF9509_01658 [Enterococcus faecalis
           TX0411]
 gi|312900626|ref|ZP_07759923.1| hypothetical protein HMPREF9510_01424 [Enterococcus faecalis
           TX0470]
 gi|312907337|ref|ZP_07766328.1| hypothetical protein HMPREF9492_01657 [Enterococcus faecalis DAPTO
           512]
 gi|312909954|ref|ZP_07768802.1| hypothetical protein HMPREF9493_01028 [Enterococcus faecalis DAPTO
           516]
 gi|312952368|ref|ZP_07771243.1| hypothetical protein HMPREF9504_01491 [Enterococcus faecalis
           TX0102]
 gi|229304731|gb|EEN70727.1| permease [Enterococcus faecalis ATCC 29200]
 gi|291079738|gb|EFE17102.1| putative membrane protein [Enterococcus faecalis R712]
 gi|291082844|gb|EFE19807.1| putative membrane protein [Enterococcus faecalis S613]
 gi|306497580|gb|EFM67113.1| hypothetical protein HMPREF9509_01658 [Enterococcus faecalis
           TX0411]
 gi|306512644|gb|EFM81293.1| hypothetical protein HMPREF9498_03232 [Enterococcus faecalis
           TX4248]
 gi|310626365|gb|EFQ09648.1| hypothetical protein HMPREF9492_01657 [Enterococcus faecalis DAPTO
           512]
 gi|310629752|gb|EFQ13035.1| hypothetical protein HMPREF9504_01491 [Enterococcus faecalis
           TX0102]
 gi|311289912|gb|EFQ68468.1| hypothetical protein HMPREF9493_01028 [Enterococcus faecalis DAPTO
           516]
 gi|311292107|gb|EFQ70663.1| hypothetical protein HMPREF9510_01424 [Enterococcus faecalis
           TX0470]
 gi|315030015|gb|EFT41947.1| hypothetical protein HMPREF9496_01115 [Enterococcus faecalis
           TX4000]
 gi|315033766|gb|EFT45698.1| hypothetical protein HMPREF9500_00121 [Enterococcus faecalis
           TX0017]
 gi|315036852|gb|EFT48784.1| hypothetical protein HMPREF9501_00162 [Enterococcus faecalis
           TX0027]
 gi|315147861|gb|EFT91877.1| hypothetical protein HMPREF9497_01368 [Enterococcus faecalis
           TX4244]
 gi|315155891|gb|EFT99907.1| hypothetical protein HMPREF9503_01658 [Enterococcus faecalis
           TX0043]
 gi|315578453|gb|EFU90644.1| hypothetical protein HMPREF9511_01513 [Enterococcus faecalis
           TX0630]
 gi|315579978|gb|EFU92169.1| hypothetical protein HMPREF9506_03134 [Enterococcus faecalis
           TX0309A]
          Length = 294

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 96/306 (31%), Gaps = 17/306 (5%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
            +  +  + ++    V+ L  + +       + +  ++++ VV   Q             
Sbjct: 1   MKIPTIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQS------------ 48

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                ++         Q L+  +      NG   I R+    G + L + +S I     +
Sbjct: 49  ---PHTDTNQVLQFIDQYLEKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFM 105

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               +        L S  +  F   +   +                IA+   ++   A  
Sbjct: 106 IEKKQMADFSKLFLKSDFDWFFQDIY-YFANKFVNTFGVVMEAQFFIAVVNTVITTLALA 164

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + G     +L ++  I++++P    I     +S     +G + +   +     I      
Sbjct: 165 IIGFTQLPSLAIMIFILSLVPVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFES 224

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P  +    +LP   TF  L+   R  G+ GL +G  +      + K   +   +  
Sbjct: 225 YVLNPKFMSSKTELPIFYTFVILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRL 284

Query: 354 EKISSN 359
             +  N
Sbjct: 285 PNVKKN 290


>gi|78486409|ref|YP_392334.1| hypothetical protein Tcr_2070 [Thiomicrospira crunogena XCL-2]
 gi|78364695|gb|ABB42660.1| Conserved hypothetical protein; predicted membrane protein with
           DUF20 [Thiomicrospira crunogena XCL-2]
          Length = 348

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/343 (14%), Positives = 110/343 (32%), Gaps = 22/343 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M         ++    + IIL +L   +    P+L A+ I   S P     +     +  
Sbjct: 1   MIRENKGLSWLVGMASVIIILTALKMAESVVVPILLAIFISIISIPFIRLMMRYSIPN-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
               +A + ++ ++I  L+          +   + + +       +   LS +       
Sbjct: 59  ---WLAIILMLGVWITLLMLFVLILSHSAQTFNNNIPVYEDGLNDLLVELSPLFQYWSFP 115

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                   H                 + I +F +        + ++   ++    F   +
Sbjct: 116 FFEATLNEHF--------------SSESIIQFMADTLTGVSVFVMNTFLVLFITIFLLME 161

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             S++Q+  +   +    Y  +      K +       T+I+   G+++        V  
Sbjct: 162 ESSLTQKFQAAWPNS--EYKIQAIAGFFKQVNRYIFIKTVISFITGVLVTLLLMFLDVDF 219

Query: 241 HVALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               GV+  +M  IP     IS        LI+  +F+A  +     I   ++   + P 
Sbjct: 220 PYLWGVLAMLMNYIPNIGSLISAIPPVFLALIQVGVFDAVLVMSGFLIINVVLGNFIEPR 279

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           L+G    L  L  F  L+      G +G+ +   L  ++ +  
Sbjct: 280 LMGFEFGLSPLVVFLSLMVWGWMFGPVGMILSIPLTMIVQIAL 322


>gi|228924182|ref|ZP_04087457.1| hypothetical protein bthur0011_51540 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835474|gb|EEM80840.1| hypothetical protein bthur0011_51540 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 344

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/355 (12%), Positives = 118/355 (33%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ I+ + LY L+     +L   I+ +           K       +
Sbjct: 4   KNLFQSKGFQRLLVLVILALVLYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------------- 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            SEL    ++    +++        + +        +FG+  L   +  +F ++     +
Sbjct: 111 -SELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEKSRIF 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  +   ++         +   +   +          +IA+   ++   A W+ G 
Sbjct: 170 GFTAKFKESRLAIFYTEI----EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   I+++
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEIEKD 340


>gi|124484941|ref|YP_001029557.1| hypothetical protein Mlab_0113 [Methanocorpusculum labreanum Z]
 gi|124362482|gb|ABN06290.1| protein of unknown function UPF0118 [Methanocorpusculum labreanum
           Z]
          Length = 346

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 119/355 (33%), Gaps = 22/355 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M             +++ I L  L     +    + AL +     P++   I +      
Sbjct: 1   MNIPQYARDHFSLILVVLIFLAILVVSWNYIFLFILALSVAVVFLPLHRKMIKRIPAP-- 58

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
           F A I T  V+ + I   + +      + +  +S           +              
Sbjct: 59  FSAGILTTFVLAVIIGICVGIVVVVSSDFEYFMSIFQTIINTVTNML------------- 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                HL+      +     +K   +   P FA     +     + +I     ++     
Sbjct: 106 -----HLTDGNDFSLKIVDEVKNILLTMFPSFALSAAQMIPAVIIDMILFYSLVYLSIIC 160

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           G  I   L S+           +++    ++ S ++    IA     +  + + L G   
Sbjct: 161 GDRIWADLCSVIPAGSMDNVLLMAKKTKDILFSIYVVHVFIAFLTFFLAYAFFLLLGYGH 220

Query: 241 HVALGVITAIMAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRP 298
            +    + A+ A+IP   P+     V IY L  G+I         G     ++ D  +RP
Sbjct: 221 EIFFSTMCALFALIPVLGPLMVIIFVGIYALCLGDIRGVILTATLGYFLTCVLTDLIIRP 280

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            L G  +K+  +  F G  GG   MGLLG  +GPVL+ L    ++  I   ++  
Sbjct: 281 KLTGKRVKIRPMLMFVGFFGGAMAMGLLGFVLGPVLLILGLTAYEIFIKEGRKKN 335


>gi|224438291|ref|ZP_03659218.1| hypothetical protein HcinC1_09901 [Helicobacter cinaedi CCUG 18818]
 gi|313144731|ref|ZP_07806924.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313129762|gb|EFR47379.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 355

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/359 (13%), Positives = 123/359 (34%), Gaps = 22/359 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                + +       +    +   +L AL++   ++ +Y+S + + +       +   V 
Sbjct: 5   TFFWLVFIVSAYSMYHIYAAYLMDILIALLLYIVTYGLYASLLKRVKYPIVSATLSICVL 64

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ L +             +  L   ++ +     P                L       
Sbjct: 65  ILLLVVP------------LFFLFKTIITSAAELNPTDFSAFVEGSKEQILSLLVSFPEI 112

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
               + +  +   ++ + ++  F+S+ G   L + +   F+I+ LFF++  G      + 
Sbjct: 113 EAKARDILSSISASSILGYVLNFSSQLGKSSLGFMVDTGFIIVFLFFYFLYGKQAYDYVI 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L           +   V  VI+  F    +  + +G+  G      G        +   
Sbjct: 173 ELIPFEN-IQISNVLDEVTNVIKVVFYTSLVNIVLQGVAFGILIMFFGYDGVFFGMLYGF 231

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVG------ 302
              +   G  + +  ++ Y    GN  NA  + L+  I    ++D  ++P L+G      
Sbjct: 232 ASIVPIVGGGLVWLPLAGYEFYLGNTQNAIIIALYALIVCAVLIDNVIKPILIGLINKKV 291

Query: 303 --GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
               +++  L  FF ++ G+ ++G  G+ +GP + AL   + +       +     +  
Sbjct: 292 LKTSVRINELLIFFAILAGLTSIGFWGIILGPAITALFISLLRIYRKQTAKESLTPTHE 350


>gi|329571447|gb|EGG53134.1| hypothetical protein HMPREF9520_02828 [Enterococcus faecalis
           TX1467]
          Length = 294

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 44/306 (14%), Positives = 96/306 (31%), Gaps = 17/306 (5%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
            +  +  + ++    V+ L  + +       + +  ++++ VV   Q             
Sbjct: 1   MKIPTIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQS------------ 48

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                ++         Q LK  +      NG   I R+    G + L + +S I     +
Sbjct: 49  ---PHTDTNQVLQFIDQYLKKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFM 105

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               +        L S  +  F   +   +                IA+   ++   A  
Sbjct: 106 IEKKQMADFSKLFLKSDFDWFFQDIY-YFANKFVNTFGVVMEAQFFIAVVNTVITTLALA 164

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + G     +L ++  I++++P    I     +S     +G + +   +     I      
Sbjct: 165 IIGFTQLPSLAIMIFILSLVPVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFES 224

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P  +    +LP   TF  L+   R  G+ GL +G  +      + K   +   +  
Sbjct: 225 YVLNPKFMSSKTELPIFYTFVILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRL 284

Query: 354 EKISSN 359
             +  N
Sbjct: 285 PNVKKN 290


>gi|150021395|ref|YP_001306749.1| hypothetical protein Tmel_1519 [Thermosipho melanesiensis BI429]
 gi|149793916|gb|ABR31364.1| protein of unknown function UPF0118 [Thermosipho melanesiensis
           BI429]
          Length = 331

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/327 (12%), Positives = 88/327 (26%), Gaps = 27/327 (8%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               V+    +             K   +      ++   ++ L     +  F     E 
Sbjct: 24  ILGAVVIGFYLSIVLDVPAKYLSKKM--NPKLSKFLSYTLLLSLIFYSAVSFFPIVFSEG 81

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           K+L                        +  + +     S+     +           +F 
Sbjct: 82  KKLF-----------------------LELTNITIPVNSNLPKWILEFINSANQQISNFA 118

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               ++            I +II           + +++ +           K  +   +
Sbjct: 119 LNILNKIFSYTPSIITMTILIIITTIAVANLKEYLKKRI-NFFFIQDKERGYKFVKKFYR 177

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
                  G  IIA+  G+++G   W+ G+     LG ++ I   IP    I  +   + L
Sbjct: 178 DFEKFVSGQVIIALFVGIMVGIFSWIFGIKGAFFLGTLSFITDFIPFLGVIIVSIPMLML 237

Query: 270 LIKGNIFNATCLFLWGAI-ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                      + +   I    I    L P +      + +      ++      G +G+
Sbjct: 238 GYSSLGIKGIVISILILITVNQIESWILAPKIQSDNFNIHWFVLIISILIFGDIFGFIGI 297

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEK 355
            I    +  I   W E I+  K  ++ 
Sbjct: 298 LIAIPSLLFIKRYWVEYILGGKRWEKP 324


>gi|254779441|ref|YP_003057546.1| hypothetical protein HELPY_0810 [Helicobacter pylori B38]
 gi|254001352|emb|CAX29337.1| Conserved hypothetical protein; putative membrane protein
           [Helicobacter pylori B38]
          Length = 348

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 129/356 (36%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +   S+   + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGLFQVKVFLDKRF--SNVISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +   L     KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLP-LGVNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|50954914|ref|YP_062202.1| membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951396|gb|AAT89097.1| membrane protein [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 276

 Score = 80.8 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 101/285 (35%), Gaps = 10/285 (3%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+  F+  +  +    + +  +LV               W+S+     W   L  +  
Sbjct: 1   MIVIGAFVGLIWAIVPVAVGQATQLVQN----------TVSWVSNGDAEKWFLTLQHQFP 50

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +      I + T      +  I     + G+  +     ++ +II   +F     SI + 
Sbjct: 51  TIVNQQNIDAVTQWLQQNLPDITSKVLQTGIGIVQGAFGVVIVIILTIYFTASLPSIKRA 110

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L      + +  I   +   +    +G  ++A+  G++      + G    + L  I
Sbjct: 111 GYQLVPASRRSRFADIGDQITDSVGKYVMGQVVLALVNGVLSTIFLSVIGAKFPILLASI 170

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
               ++IP    I+ + + +++ +      A    ++  + + +    L P ++   + +
Sbjct: 171 AFFFSLIPLVGTITGSVIIVFVCLFSGPPTAIAAAVYYIVYMQVEAYVLSPRIMNRAVSV 230

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P        + G   +G+LG  +     A I +I K+ ++  +  
Sbjct: 231 PGAVVVVAALAGGTLLGILGALVAIPFAAAILLIIKQVLVPRQNE 275


>gi|297516617|ref|ZP_06935003.1| putative transport protein [Escherichia coli OP50]
          Length = 286

 Score = 80.4 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 81/289 (28%), Gaps = 21/289 (7%)

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                   I    ++   ++ L +L        + L             +   L  +   
Sbjct: 1   MPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGID 60

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
           +   +L      +     + +     +N +  I         + L+              
Sbjct: 61  VSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------- 107

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                  +  +   +     P       +     +    +  T I+I  GLV  +     
Sbjct: 108 -----PQLPGKFQQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL 160

Query: 237 GVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            V      G++   +  IP     ++       +L+    + A  +     +   +    
Sbjct: 161 DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNI 220

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L P ++G  + L  L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 221 LEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 269


>gi|218886800|ref|YP_002436121.1| hypothetical protein DvMF_1707 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757754|gb|ACL08653.1| protein of unknown function UPF0118 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 504

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/355 (12%), Positives = 108/355 (30%), Gaps = 41/355 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +  +  + +  + +     + F   +  A+++   + P+      +  +     A    
Sbjct: 114 TRVWLALLAVVAVGIGWLLARPFIHTLAVAIVVAALAAPLQERIARRVRQPD-LAAASTI 172

Query: 68  VSVMCLFIVPLLFLFYYGMLE-------------------------------------MK 90
           ++++     PL       + +                                       
Sbjct: 173 LTLLLGVAAPLAVFVAALIPQARALARAAMAFYAASGNGGSDAAAGAAAGAATGAVPGAA 232

Query: 91  ELVSKVVLANQHGIPVPRWLSDI--PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
                +    + G+     LS                      +    +         + 
Sbjct: 233 VAAGSLPAPVELGLARLHELSVWVTRTLADFGIDAPDLADFDPASLRGTLLGAARQAGET 292

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +    +      +      + M+  L+F  RDG  +   +  +   L  A   ++   + 
Sbjct: 293 VLHGITAGVGNAVYLFGHFLLMLFILYFLLRDGRQMMAFVKRVSP-LAHAQEDRLLTALR 351

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
            V RS F+G  ++A+ +G++    + L G+P+      ++    +   G  + +   + Y
Sbjct: 352 GVARSVFMGGVLVAVFQGVIGAVGFALVGLPALFWGFAMSFAAMIPVVGTALIWAPATAY 411

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           L + G  + A  L  W A+ +   D  LR + +     +P L  F  ++GG+   
Sbjct: 412 LYLSGETWRAVFLLGWCAVLVSSSDGLLRAWFMKEGAGIPMLYLFLAILGGLNMF 466


>gi|312134324|ref|YP_004001662.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           owensensis OL]
 gi|311774375|gb|ADQ03862.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           owensensis OL]
          Length = 370

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 105/343 (30%), Gaps = 13/343 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           I   +I   I   +Y +K F          F PV+  L+I   S P+      + + S T
Sbjct: 14  IYVILISAFIFSCVYLIKTFDLFVRFVIKAFIPVIVGLLIAEVSEPLLKYLEKR-KVSRT 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+   + +  +    L    Y  + E   LV+ +   +   I               S
Sbjct: 73  ISAIFILIVLNLILGFMLAEGIYILVNECMSLVTSLQNIDYDKIYQTLDKLFASVKNIYS 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    ++  QS        L       +     +     L       F +++ FFF RD
Sbjct: 133 GLPGPIINFIQSGVDELTNVLNQIATMSL--KVIKVIPATLKGITVWFFSVLSSFFFMRD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L              I   V   +        I++    L       +   P 
Sbjct: 191 RHRMRAWLIQNFSAQLYKEISSIVFKVIDSVVDYAKSQIILSALMFLSGLIGLSIIKAPY 250

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  ++++IP           I         N     L   + +  + +     +
Sbjct: 251 FLVVSLLLGLLSIIPIIGSGIILLPWIAGSFIAGDTNFGIKLLVVYLIILGLREFASIKI 310

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 311 VASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|308172315|ref|YP_003919020.1| integral inner membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307605179|emb|CBI41550.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens DSM 7]
          Length = 349

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 98/347 (28%), Gaps = 15/347 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ +  ++   L   +     +L   I  F    + +               +    
Sbjct: 12  GVRRFSVFLVLTGVLVVFRSMINLILLTFIFTFLMDRLETVIRHVLNHFFRISQRVVITV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +     V      +     + + + +++   +H    P  +            + +  S 
Sbjct: 72  LYIALAVGATVGGFVFYPIVAKQIEQLIKQIKHIAYHPDVIP----------FYEEISSV 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              + I S      N +       S FG+  +   +  +F +                  
Sbjct: 122 FGDINIGSYVKEGFNVLYTYLADISTFGLQVVMSLILSMFFLFEKKRLTEFMKKFQHSKL 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+  +              +          IIA+   ++   A  +   P    L ++  
Sbjct: 182 SVFYYEL----AYFGSKFARTFGKVLEAQFIIALVNCILTLIALAILHFPQLFGLSIMVF 237

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP     IS   +SI     G       + L   +   I    L P L+    +LP
Sbjct: 238 FLGLIPVAGVVISLIPLSIIAYTTGGAAYVIYIVLVIFVIHAIETYFLNPKLMSAKTELP 297

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              TF  L+      G+ GL IG  +   +  I         E  E 
Sbjct: 298 IFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVVNNEEMEKSEP 344


>gi|313633275|gb|EFS00138.1| membrane protein YdbI [Listeria seeligeri FSL N1-067]
 gi|313637865|gb|EFS03195.1| membrane protein YdbI [Listeria seeligeri FSL S4-171]
          Length = 345

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 46/339 (13%), Positives = 104/339 (30%), Gaps = 19/339 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R+ +  ++   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNKSVKRFGVFLLLAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + ++  +        ++ +LV+                         ++   
Sbjct: 67  LLYVVIATVIVLVFVKYIPVLGDQVNQLVNFANKFFTT--------------DSNNDFIN 112

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++      I+  T      +           M      +  +F  +            
Sbjct: 113 YIINLANQFDIMKYTEQGVTMLLTYLTNVGTVLMNVFIALMLSLFFSLGKDHLVSFTNQF 172

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S             +  K      KVI        IIA+   ++   A W+ G P  + L
Sbjct: 173 STSKIGFIYEEAKFFGSKFVGTFGKVIE----AQFIIALVNAVLTTIALWILGFPQLMTL 228

Query: 245 GVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  ++ +IP    I     ++I     G +     + +   I   +    L P L+  
Sbjct: 229 SIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILIVVMIIHALESYVLNPKLMSA 288

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 289 XXXLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 327


>gi|229112851|ref|ZP_04242383.1| hypothetical protein bcere0018_50890 [Bacillus cereus Rock1-15]
 gi|229147982|ref|ZP_04276322.1| hypothetical protein bcere0012_51040 [Bacillus cereus BDRD-ST24]
 gi|228635477|gb|EEK91967.1| hypothetical protein bcere0012_51040 [Bacillus cereus BDRD-ST24]
 gi|228670685|gb|EEL25997.1| hypothetical protein bcere0018_50890 [Bacillus cereus Rock1-15]
          Length = 324

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 97/334 (29%), Gaps = 23/334 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLL 79
           LY L+     +L   I+ +           K       +   +     V ++    + L 
Sbjct: 2   LYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKIIIAFLYVMLIGGIAITLF 61

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                  +++ +L+ +  +  ++                 + +    LS      +    
Sbjct: 62  KYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILY 115

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              TN   F  +      +           +     F          ++           
Sbjct: 116 KSITNVGKFGLQVLLSLILSLFFLLEKSRIVGFTAKFKESRLAIFYTEI----------- 164

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP    
Sbjct: 165 -EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGV 223

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I     + +     G I     + +   +   +    L P  +     LP   TF  L+ 
Sbjct: 224 IISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIF 283

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               +G+ GL IG  +   +  +   +   ++++
Sbjct: 284 SEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 317


>gi|331698970|ref|YP_004335209.1| hypothetical protein Psed_5219 [Pseudonocardia dioxanivorans
           CB1190]
 gi|326953659|gb|AEA27356.1| protein of unknown function UPF0118 [Pseudonocardia dioxanivorans
           CB1190]
          Length = 389

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 48/321 (14%), Positives = 95/321 (29%), Gaps = 21/321 (6%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L        PV  AL++     P+      +          +AT+  +      ++ L 
Sbjct: 39  GLKAFSSILGPVFLALMLTVAVHPLMGRLRGRGVP-----VWLATLLTLLATFAVVIALA 93

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               L +  L + +         +   +  +   +                       L 
Sbjct: 94  AALALSVARLATLLPSYQDRFAALLGDVDALLASLGVGH-------------EQVRAALS 140

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +  I        +        ++F++  L F   D     + + SL           
Sbjct: 141 QIDLGTIAGLVGDVLVGLTGAFSDLVFILALLLFMGIDAARFGRGVRSLTGE--RPGIVT 198

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
                 +  RS  +  T+  +   +    A W  G+P  +  G++  I   IP    I  
Sbjct: 199 ALETFARGTRSYLVVTTVFGLIVAVADTIAVWALGIPLPLLWGLLAFITNYIPNIGFIIG 258

Query: 263 -TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +I  L++G       + +   +  F++   ++P  VG  + L    TF  LV    
Sbjct: 259 LAPPAILGLLEGGPKLMVIVIVVYCVINFVIQSVIQPKYVGDAVDLSLTLTFLSLVFWGW 318

Query: 322 TMGLLGLFIGPVLMALIAVIW 342
            +G LG  +   L  L   + 
Sbjct: 319 VVGPLGALLAIPLTLLTKALL 339


>gi|328552126|gb|AEB22618.1| integral inner membrane protein [Bacillus amyloliquefaciens TA208]
 gi|328910399|gb|AEB61995.1| putative integral inner membrane protein [Bacillus
           amyloliquefaciens LL3]
          Length = 349

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 98/347 (28%), Gaps = 15/347 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ +  ++   L   +     +L   I  F    + +               +    
Sbjct: 12  GVRRFSVFLVLTGVLVVFRSMINLILLTFIFTFLMDRLETVIRHVLNHFFRISQRVVITV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +     V      +     + + + +++   +H    P  +            + +  S 
Sbjct: 72  LYIALAVGATVGGFVFYPIVAKQIEQLIKQIKHIAYHPDVIP----------FYEEISSV 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              + I S      N +       S FG+  +   +  +F +                  
Sbjct: 122 FGDINIGSYVKEGFNVLYTYLADISTFGLQVVMSLILSMFFLFEKKRLTEFMKKFQHSKL 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+  +              +          IIA+   ++   A  +   P    L ++  
Sbjct: 182 SVFYYEL----AYFGSKFARTFGKVLEAQFIIALVNCILTLIALAILHFPQLFGLSIMVF 237

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP     IS   +SI     G       + L   +   I    L P L+    +LP
Sbjct: 238 FLGLIPVAGVVISLIPLSIIAYTTGGAAYVIYIVLVIFVIHAIETYFLNPKLMSAKTELP 297

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
              TF  L+      G+ GL IG  +   +  I         E  E 
Sbjct: 298 IFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVVNNEEVEKSEP 344


>gi|284167020|ref|YP_003405299.1| hypothetical protein Htur_3764 [Haloterrigena turkmenica DSM 5511]
 gi|284016675|gb|ADB62626.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 376

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 115/335 (34%), Gaps = 25/335 (7%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
           + + ++  ++  + LV+   L      ++ AL + +   P+      +   S    AV A
Sbjct: 10  DRRYVLAGIVALLGLVTGVILLDVLGTIMFALTVAYVLLPVQGWLHRR-GLSEWLSAVAA 68

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T+      +     L        +++ + V    +         +               
Sbjct: 69  TLLGFLGTVAVFAPLVVALYFRFEQVQTIVEEVPREVPVAVAGYTH-------------- 114

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                    +    +++  ++ +   A  F        +     ++ LF       +  +
Sbjct: 115 --------TIDVAEVRSLALESLGDVAVSFAAALPVLAIKFALFVMVLFALLLKADAAGR 166

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +   H +      ++    + + + ++     +I    V    +WL G  +   +  
Sbjct: 167 AAIAPVPHGYRDVVYALATRARETLYAIYVLQFATSIATLAVAYPLFWLLGYDAAFTIAF 226

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGP 304
             AI+  IP   P +    +++Y +  G +     + + G   +  + D  +RP L    
Sbjct: 227 FAAILQFIPMIGPSLLIAPIALYHVAVGELVAGLLVGVLGMALVAWLPDIAVRPRLARRS 286

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             LP    F G  GG+ T+G +G+ +GP+++A+  
Sbjct: 287 AGLPGSLYFVGFTGGLFTLGAIGVVVGPLIVAVFV 321


>gi|28572503|ref|NP_789283.1| hypothetical protein TW349 [Tropheryma whipplei TW08/27]
 gi|28410635|emb|CAD67021.1| conserved hypothetical integral membrane protein [Tropheryma
           whipplei TW08/27]
          Length = 359

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 12/294 (4%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            FA +  AL I     P+ S+ + K   S     V+  +       V L  +      E 
Sbjct: 49  LFAYIGLALFITLAIEPLISALV-KLGISRGVSVVLLLLFFSAFLGVALWLIIPILTSET 107

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L   V      G              + S L         +  +        N +  I
Sbjct: 108 ALLWKTVSSFMTEGN----------YRQFISLLRKAIPDFDFNELLQQGWLWIQNNVTTI 157

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G+  ++    I+ ++I   +F     +I      L       + K     V  
Sbjct: 158 TGSVVNIGIGIVNTVTGIVIVLILTIYFSATLPTIKATGYKLVPASRREFVKDTLEDVLS 217

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI-SFTAVSIY 268
            +     G  ++A   G +    + +      + +  I  I +MIP    I S   +S  
Sbjct: 218 SVGRYTAGQFLLASINGTLTLLIFSILQFKYPILMAFIAFIGSMIPLVGTISSSALISGI 277

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
            L     +    + ++  + + +    + P ++   + +P        + G   
Sbjct: 278 TLFSAQGWTVWAVVIYYLVYMNVEAYVISPKIMKKAVSVPGSLVVISALAGGML 331


>gi|309775355|ref|ZP_07670360.1| hypothetical protein HMPREF0983_00859 [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916872|gb|EFP62607.1| hypothetical protein HMPREF0983_00859 [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 291

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/293 (9%), Positives = 87/293 (29%), Gaps = 23/293 (7%)

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++  + +  L  V ++ +      ++ +  + + +  +H                  
Sbjct: 1   MAVMLVYIGIALLLAVFVIGMIPIIYRQVMDFAAVLPVWMKHLEAFLDRYH--------- 51

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                       + I +   LK   +              +    +     I  FF   D
Sbjct: 52  ------------IAIGNLDTLKEKYLQEGYIIVIDSLRSTMSTATNYGIAYITAFFISID 99

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                +    +  +L    +      +  ++    +G  +  +   + +G   +L   P+
Sbjct: 100 LDFWKRTAKKVIPNLHQ--FSTFYLTMSNIVYQYLVGTFLDMLFIVVSVGITLYLFAFPN 157

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            +   VI A++ + P         +   +            F        +    ++P +
Sbjct: 158 ALLYAVILALLNLFPYVGATFGLILIAIVGALSYPVFPFLAFAIVWTIQQVESNFIQPMI 217

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
               + +  + TF  +       G++G+ + P+  A+  + ++  + A   ++
Sbjct: 218 FNRTMNVRPILTFVFIFISEAFFGVVGVILSPIFAAIAQIAFRSWLHAKTSDR 270


>gi|110668929|ref|YP_658740.1| hypothetical protein HQ3040A [Haloquadratum walsbyi DSM 16790]
 gi|109626676|emb|CAJ53142.1| conserved hypothetical protein [Haloquadratum walsbyi DSM 16790]
          Length = 379

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 116/368 (31%), Gaps = 27/368 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +    + +  V  +    F AP+  A+ + +++   Y+    +    ++  A 
Sbjct: 1   MNARRFAVALFGLAVFSVIGFLAYEFIAPLTIAVFLYYSTRKYYTLLE-RFRLPASIRAG 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA  S+    I  + +     +LE +  + +  L +     V           W   +  
Sbjct: 60  IALGSLAIPLIFLVSYAGVLLVLEARAFIDEYDLISVAAENV----------SWFGSVSR 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 Q L    ++   T  IDF    AS    +   + L++  + I  ++   DG  I
Sbjct: 110 VPEFTVQGLYNAYQSGQLTPLIDFATAHASVLTSMISQFTLNLFIITIVTYYLLVDGDKI 169

Query: 185 SQQLDSL-----GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              L              A  +++  ++   + +      I      +        A VP
Sbjct: 170 GAWLLRFDDEAIIREYLEAADRELESVLFGNLLNVLSISLIAIGVFNVYNVFVPSPAEVP 229

Query: 240 SHVALGVITAIMAMIPGGA---------PISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
                G +T I ++IP             +S   + +        + A  L +   +   
Sbjct: 230 YPALAGGLTGIASLIPVVGMKIVYFPLTILSAVPILLGGNPSNLTYIAGLLVIAIVVIDT 289

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           I D  LRP L G                G   +G  GLF  P+L+ +       ++  + 
Sbjct: 290 IPDIVLRPLLSGDET--HVGLLMLAYTLGPVVLGFYGLFFAPILLVIGLTFANTALPRLL 347

Query: 351 ENKEKISS 358
                  +
Sbjct: 348 NTANNADT 355


>gi|89096364|ref|ZP_01169257.1| membrane protein [Bacillus sp. NRRL B-14911]
 gi|89089218|gb|EAR68326.1| membrane protein [Bacillus sp. NRRL B-14911]
          Length = 343

 Score = 80.4 bits (197), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/327 (12%), Positives = 93/327 (28%), Gaps = 19/327 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                +L   I  F    + +    K   +   + +   + ++    +  +        E
Sbjct: 31  SMINIILLTFIFSFLMDRLTTLLTDKWNLNRPLVVMFLYLVLIGGLTLAAINYLPVISRE 90

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + +L++++               +         +    ++              T+    
Sbjct: 91  VTQLIAQLQAFY------LHPHENGFINYIVLFIEQNDINKYLEQGFTFLLKYFTDISKI 144

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
             +      +           +   L F      +   +++                   
Sbjct: 145 GMQVLISLLLSLFFLLEKKKLIDFTLKFKTSKVAAFYDEIEYFSR------------KFS 192

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSI 267
                      +IAI   ++   A W+   P  VAL ++  ++ +IP    I     ++I
Sbjct: 193 MTFGKVIEAQFVIAIVNCILTTLALWIMDFPQLVALSLMVLVLGLIPVAGVIISMIPLTI 252

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                G       + L   +   I    L P L+    +LP   TF  L+      G+ G
Sbjct: 253 IAYSIGGFMLVGYIILVVMVIHAIEAYILNPKLMSSKTELPVFYTFIVLIFSEHFFGIWG 312

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKE 354
           L +G  +   +  I     +A K+ K+
Sbjct: 313 LIVGIPVFMFLLDILGVKEIAPKQTKQ 339


>gi|326202317|ref|ZP_08192186.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
 gi|325987435|gb|EGD48262.1| protein of unknown function UPF0118 [Clostridium papyrosolvens DSM
           2782]
          Length = 348

 Score = 80.0 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 50/325 (15%), Positives = 109/325 (33%), Gaps = 15/325 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +++L+ +   R +I+    + +YFL+G     L   I  +  +   S    K +  ++ L
Sbjct: 5   KSILSKKITKRVLILAGFALLVYFLRGMANMFLLTFIFAYLGYTAQSYVFKKTKIINSRL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  +    + +   + +          L   + +       +    +      + ++ 
Sbjct: 65  LKVIIIFFYLVAVTSAVLI----------LYKYIPVIISELKTLVEQATTFYNTTYENKT 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S  + +KI S        +        + G  F+   +  +F I+      R   
Sbjct: 115 LNYIISLSKEIKISSYIRDNFEVLYKSISNLGKIGFDFVMAIVLSLFFILEKNRIVRFTS 174

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                  S        + +K  +   KVI++       I+    ++     +    P   
Sbjct: 175 GFKNSKLSAVYDELSFFGRKFLQSFGKVIQT----QITISFINAILSMIMLYFLKFPQIF 230

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            LG +  I+ ++P     IS   +S+  L  G       + +  AI   +    L P L+
Sbjct: 231 GLGFMIFILGLVPVAGVVISLLPLSMIALRIGGPSMIIYVLVLVAILHALESYILNPKLM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLL 326
               KLP   TF  L+     +G+ 
Sbjct: 291 SQKTKLPVFYTFVVLIVSEHILGIW 315


>gi|311111549|ref|ZP_07712946.1| LOW QUALITY PROTEIN: putative membrane protein [Lactobacillus
           gasseri MV-22]
 gi|311066703|gb|EFQ47043.1| LOW QUALITY PROTEIN: putative membrane protein [Lactobacillus
           gasseri MV-22]
          Length = 340

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/305 (13%), Positives = 89/305 (29%), Gaps = 19/305 (6%)

Query: 40  IGFTSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVL 98
             +    +      K     S  + V+A + V+ +    +       + ++ ++   ++ 
Sbjct: 34  FTYLIVHLIRFTQKKLPNLPSQVIVVLAYLLVIAIIYFAITIYMPILIKQIVKMSHSLME 93

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
             Q                    +          +     T    +G+  +    +  G 
Sbjct: 94  FYQS-----------------DNMDWLTQYLNHYISDSEITTQAKHGVTILVHALTNVGT 136

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           + + + +S+I                   L+S                            
Sbjct: 137 LTIAFFMSLIMSFFYTIELDSMNEFSHTFLNSRHLSWLFKDIAYFGNKFVNTFGVVLEAQ 196

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFN 277
             IA+    +      +  +P  +ALG++  I+++IP    I     +S      G I  
Sbjct: 197 FFIALCNTAMTMICLIIMKMPQIIALGLMVFILSLIPVAGVIISLIPLSFVAYSVGGIRY 256

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              +F+   I   I    L P  +    +LP   TF  L+ G   +G  GL +G  +   
Sbjct: 257 VIYIFIVIMIIHAIEAYILNPKFMSSKTELPIFYTFVVLLAGEHFLGTWGLIVGVPIFTF 316

Query: 338 IAVIW 342
           +  I 
Sbjct: 317 LLDIL 321


>gi|15644101|ref|NP_229150.1| hypothetical protein TM1349 [Thermotoga maritima MSB8]
 gi|148270563|ref|YP_001245023.1| hypothetical protein Tpet_1434 [Thermotoga petrophila RKU-1]
 gi|170289269|ref|YP_001739507.1| hypothetical protein TRQ2_1480 [Thermotoga sp. RQ2]
 gi|281412871|ref|YP_003346950.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
 gi|8928513|sp|Q9X170|Y1349_THEMA RecName: Full=UPF0118 membrane protein TM_1349
 gi|4981909|gb|AAD36420.1|AE001789_5 conserved hypothetical protein [Thermotoga maritima MSB8]
 gi|147736107|gb|ABQ47447.1| protein of unknown function UPF0118 [Thermotoga petrophila RKU-1]
 gi|170176772|gb|ACB09824.1| protein of unknown function UPF0118 [Thermotoga sp. RQ2]
 gi|281373974|gb|ADA67536.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
          Length = 338

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/350 (12%), Positives = 101/350 (28%), Gaps = 18/350 (5%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R+ + +       + + I  +        FA ++  +       P+      K +    F
Sbjct: 5   RKILEDKAFFFTTLYILISFLVFKIFPDVFAVIVLMVFFTLLLDPVIRFLE-KLKFGKYF 63

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             V A +    + +  L  +      E    +  +    +  I                 
Sbjct: 64  SRVAALLLFFFVMVYSLYMIIPPVFNEFGSFIEFMTKVFESKI----------------W 107

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                      +      FL+    DF+    S     F+     I+F +  L +     
Sbjct: 108 KDYIKSPELMPVFDKIMNFLEPKLTDFLNYVFSLVTTNFVSVTTIIVFTLFGLGYTVFYI 167

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             I+     +      A  ++  R V   +      + I A+  GL     +    +   
Sbjct: 168 REIASFFVLIYPKSVRAEAREFFRDVYASMGRYIRVIFINAVIIGLSYWIVFEAFNLKYS 227

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             + +   +   IP    +      +   +   +     + L+  +   +    +   L+
Sbjct: 228 AIISLWAFVTNFIPIVGVVLEYIPVLLFSLTLGVKGVLLIALFAILIHAVA-FVVFIQLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G  KL  +     ++   +  GL G F+G  L     V W++ +  + E
Sbjct: 287 KGLEKLNPVYIILSILFFGKLFGLFGSFVGVPLALFFKVFWRKFLRPLFE 336


>gi|58336393|ref|YP_192978.1| permease [Lactobacillus acidophilus NCFM]
 gi|227902553|ref|ZP_04020358.1| permease [Lactobacillus acidophilus ATCC 4796]
 gi|58253710|gb|AAV41947.1| putative permease [Lactobacillus acidophilus NCFM]
 gi|227869642|gb|EEJ77063.1| permease [Lactobacillus acidophilus ATCC 4796]
          Length = 346

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 43/342 (12%), Positives = 106/342 (30%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R+++  +I+  LY ++     +L   I  +    +         +  +  
Sbjct: 6   QKFKNNVLLRRFVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIHLVQRYIPKMPTGV 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+  + ++ L    +       ++++ ++V  V+   +                  +E
Sbjct: 66  IVVVTYLIILALLYFVITVYLPMLIVQISKMVKSVMAFYEK-----------------NE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +          + + F    A+  G + +   +S+I          +  
Sbjct: 109 SSRLVSYITRYISKGELVTQAKHAMTFAFHTATNIGTLTIATFMSLILSFFYTIELNKMK 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  + S          +   +               IA+    +      +  +P  
Sbjct: 169 EFSSLFVKSGYLKWLFEDIRYFDKKFTNTFGVVLEAQFFIALCNTALTVIGLVIMKMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           VALG++  +++++P    I        +    G I     +F+   I   +    L P  
Sbjct: 229 VALGLMVFLLSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +      + 
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFFLDVL 330


>gi|323137607|ref|ZP_08072684.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
 gi|322397233|gb|EFX99757.1| protein of unknown function UPF0118 [Methylocystis sp. ATCC 49242]
          Length = 347

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 104/335 (31%), Gaps = 23/335 (6%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            + + +IL +    +    PV+ A+ I   +WP+  +  SK          +  V    L
Sbjct: 13  IVAVLLILAACKVGQAVLEPVVFAIFIIEIAWPMQKTLRSKIG--KAMALALTVVVTATL 70

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  L  + + G    + +   +    +  I    WL +    ++A              
Sbjct: 71  ALALLSVIVWGGRQVAEWVGGNLDRIQESLISSTAWLEEHDIFVFALLSDHFD------- 123

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                          + R      +         + ++I +     +   ++ ++ +L  
Sbjct: 124 ------------PATVVRMIHAMAIRANTIMAFAVIVLIYVVLGLGEADILTGRIATLKN 171

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                      R +    R+  L  T+ +I  GL +     L  +    A GV+   +  
Sbjct: 172 QDASRRLIAAGRKIGVKFRTYMLVRTVASIATGLAVWGFAVLLHLEMAGAWGVLAFALNY 231

Query: 254 IPGGAPIS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           +P    +           +  G+      + L  +    ++   L P   G  + +    
Sbjct: 232 LPYIGSLIVTAALPLFAFVQFGSFETPLLVLLGISFIQAVIGSYLEPVFSGSALSISPPL 291

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
             F +V      G LG F+G  LM     +++E  
Sbjct: 292 VLFSIVLWTFLWGALGAFLGVPLMIAALTLFEEFP 326


>gi|154684950|ref|YP_001420111.1| YdbI [Bacillus amyloliquefaciens FZB42]
 gi|154350801|gb|ABS72880.1| YdbI [Bacillus amyloliquefaciens FZB42]
          Length = 349

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 49/348 (14%), Positives = 99/348 (28%), Gaps = 15/348 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G+ R+ +  ++   L   +     +L   I  F    + +               +    
Sbjct: 12  GVRRFSVFLVLTGVLVVFRSMINLILLTFIFTFLMDRLETVIRHVLNHFFRISQRVVITV 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +     V      +     + + + +++   +H    P  +            + +  S 
Sbjct: 72  LYIALAVGATVGGFVFYPIVAKQIEQLIKQIKHIAYHPDVIP----------FYDEISSV 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              + I S      N +       S FG+  +   +  +F +                  
Sbjct: 122 FGDINIGSYVKEGFNVLYTYLADISTFGLQVVMSLILSMFFLFEKKRLTEFMKKFQHSKL 181

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S+  +              +          IIA+   ++   A  +   P    L ++  
Sbjct: 182 SVFYYEL----AYFGSKFARTFGKVLEAQFIIALVNCILTLIALAILHFPQLFGLSIMVF 237

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            + +IP     IS   +SI     G       + L   +   I    L P L+    +LP
Sbjct: 238 FLGLIPVAGVVISLIPLSIIAYTTGGAAYVIYIVLVIFVIHAIETYFLNPKLMSAKTELP 297

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
              TF  L+      G+ GL IG  +   +  I        KE    +
Sbjct: 298 IFFTFTVLIFSEHFFGIWGLIIGIPIFVFLLDILDVVNNEEKEKNGPV 345


>gi|307297286|ref|ZP_07577092.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916546|gb|EFN46928.1| protein of unknown function UPF0118 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 479

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 81/276 (29%)

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +  Y   E  EL+S  VL N   +       ++        +                 
Sbjct: 204 IISNYLNPEAAELLSASVLDNAMVVHSQELWRNVVDYFMPKNIDPSTQRATYESVRNFLI 263

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            ++++ + F+P    +         L + F I+   +      ++   +           
Sbjct: 264 QVQSSLMKFLPGILEKIPSFLTSTGLVLFFTIVGAIYLSYYFLTVKDFIPRFYPKKVRGI 323

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                    K +    + + +IA+  G+V+G      G+   + +G   A   +IP    
Sbjct: 324 AISFLEDTYKNLERYVISVVVIALIVGVVVGIVVHSMGLKYSLLMGTWAAFTNLIPIVGV 383

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                    L +           +   + +      L    + G  ++  +     +V  
Sbjct: 384 PLEFIPLFLLAVSTQDLVLVITLMIILVIVHASAFILFLVFMKGYNRINPVIIILMIVIA 443

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            +  GL G  I      ++ + W      + E +E+
Sbjct: 444 GQLWGLFGAIIAVPFAIVLKMTWMHFFSPMLEEEEQ 479


>gi|108562971|ref|YP_627287.1| membrane protein [Helicobacter pylori HPAG1]
 gi|107836744|gb|ABF84613.1| membrane protein [Helicobacter pylori HPAG1]
          Length = 349

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 127/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL  I      +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGI-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  V+IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPVAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|317009456|gb|ADU80036.1| outer membrane protein [Helicobacter pylori India7]
          Length = 348

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 125/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGI-HQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|229035076|ref|ZP_04189023.1| hypothetical protein bcere0028_51020 [Bacillus cereus AH1271]
 gi|228728261|gb|EEL79290.1| hypothetical protein bcere0028_51020 [Bacillus cereus AH1271]
          Length = 324

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 92/324 (28%), Gaps = 23/324 (7%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLL 79
           LY L+     +L   I+ +           K       +   +     V ++    + L 
Sbjct: 2   LYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKIIIAFLYVMLIGGIAITLF 61

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                  +++ +L+ +  +  ++                 + +    LS      +    
Sbjct: 62  KYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILY 115

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              TN   F  +      +           +     F          ++           
Sbjct: 116 KSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYTEI----------- 164

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP    
Sbjct: 165 -EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGV 223

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I     + +     G I     + +   +   +    L P  +     LP   TF  L+ 
Sbjct: 224 IISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIF 283

Query: 319 GVRTMGLLGLFIGPVLMALIAVIW 342
               +G+ GL IG  +   +  + 
Sbjct: 284 SEHFLGVWGLIIGIPIFIFLLDVL 307


>gi|229160935|ref|ZP_04288924.1| hypothetical protein bcere0009_17240 [Bacillus cereus R309803]
 gi|228622503|gb|EEK79340.1| hypothetical protein bcere0009_17240 [Bacillus cereus R309803]
          Length = 337

 Score = 80.0 bits (196), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 105/325 (32%), Gaps = 19/325 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K   +   +
Sbjct: 5   KNFFRSRGFQRFLVLIIVALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  DS  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKDSRLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     + I     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYILVFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLL 326
                LP   TF  L+     +G+ 
Sbjct: 287 SAKTNLPIFFTFMILIFSEHFLGIW 311


>gi|57168276|ref|ZP_00367415.1| acid membrane antigen A Cj1363 [Campylobacter coli RM2228]
 gi|57020650|gb|EAL57319.1| acid membrane antigen A Cj1363 [Campylobacter coli RM2228]
          Length = 347

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 126/352 (35%), Gaps = 21/352 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +   I+ ++ + LY  KGF   ++ A ++   +    + F+S         ++
Sbjct: 1   MQTGKIFLICFILVVLSLLLYLFKGFLLVIIIASLMAVATSNANAKFLSLTNGRKFLASM 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     +V    + +             +   L  
Sbjct: 61  LTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLNYVK-----------NYQFTLPE 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +K    +    +    I  +AS F      + + ++ + I  FF    G  +
Sbjct: 110 SLSFLEPKIKEFLASIDLNSISKQILNYASSFTKSGAKFLIDMVLICIFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + S+           I   V  V+      M IIAI +G +        G  + +  
Sbjct: 170 VIYIKSVIPIDKQEL-DDILSEVGNVMAVVLYSMIIIAILQGALFSIIAMFYGYDAILMG 228

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP----- 298
            +      +   G  + +  +S+Y      + +A  +F++  + + FI D  ++P     
Sbjct: 229 VIFAVSSLIPALGGALVYIPISLYEFASSGLGSALVIFIYSVVVISFIADTLVKPLIIKW 288

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               LV  P K+  L  F  ++ G+ T G  G+ +GP ++       +  ++
Sbjct: 289 INEKLVKTPAKINELLIFLAMIAGISTFGFWGIILGPAILTFFISTIRLYMI 340


>gi|237750422|ref|ZP_04580902.1| amaA [Helicobacter bilis ATCC 43879]
 gi|229373952|gb|EEO24343.1| amaA [Helicobacter bilis ATCC 43879]
          Length = 349

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 48/359 (13%), Positives = 121/359 (33%), Gaps = 22/359 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + +   +   + + +L   + +   +L A ++   +  +     +  + +       
Sbjct: 1   MQSKIVFGLLFGGVCVATLMLYQAYLFNILIAFLLCVATIWLKHWLQNYVKNALLASLFA 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  +FI  L   +   +         +           + L++    +        
Sbjct: 61  LLLMIGLVFIPVLFVCYRAFLGVKMINWLSLQSMFDQSKLALQNLAEKLPFI-------- 112

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  L  L            + + +S  G   L + +    +I+ LF F+  G  + 
Sbjct: 113 ----HDYLPSLLNEISFAKISGIVLKLSSIVGENGLKFIIDGFVIIVFLFVFFYFGERLY 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +      A   +++  V   +R  FL      + +G   G   +  G    +   
Sbjct: 169 AYMKRILPFE-EAQINEVAMEVSGTLRLVFLSTFFNVVMQGTAFGIIAYFFGFDGVLLGI 227

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTLRPFLVG-- 302
           +      +   G  I +  +   L+ +G+   A  + L+      FI+D  ++P+L+G  
Sbjct: 228 LYGICSMIPIVGGVIVWLPICAILVYQGDFKGAVIVGLYSAVFIGFIIDNIVKPWLIGIV 287

Query: 303 ------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
                  P+++     FF ++ G+   G  G+ IGP + AL   + +       +  ++
Sbjct: 288 NKRILRTPLQINEFVIFFAILAGIGAFGFWGIIIGPAITALFIALLRVYEHEFVDKNKE 346


>gi|225851199|ref|YP_002731433.1| PerM protein [Persephonella marina EX-H1]
 gi|225646386|gb|ACO04572.1| PerM protein [Persephonella marina EX-H1]
          Length = 343

 Score = 80.0 bits (196), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/335 (15%), Positives = 111/335 (33%), Gaps = 23/335 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++    + +I+  L   + F    L AL       P++    + K      L +I  ++
Sbjct: 9   TLISIASVVVIIAGLKAAQEFVVQFLLALFFAIMFLPVFKHLNALKIPKWISLLIILFIN 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ +       L    +  + EL   +    Q                        +L  
Sbjct: 69  LLVV-----YLLALTIVTSVDELRKNLGDYQQKLNLYMDEGQKFLQKFGFHLPENINLDL 123

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                            + I +F S   + F +   + +F+II   F   +    SQ++ 
Sbjct: 124 LN--------------PNMILQFMSNSLLSFGNILANAVFIIILAVFILLESDMFSQKIK 169

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +           +     + +       T+++I  G       ++ G+   +  GV+T 
Sbjct: 170 MI---SKGRKASLLVDQFFESVIKYMKIKTVVSIFTGFFAWIFLFIFGIDFALLWGVLTF 226

Query: 250 IMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           ++  IP    I      + + LI G I  +  + +W      I+   + P  +G  + L 
Sbjct: 227 LLNFIPTIGSIIAAIPPVIIALIDGGIPLSLIVAVWYLTINMIIGNIIEPRFMGKGVGLS 286

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L     LV     +G +G+F+   L  +  + ++
Sbjct: 287 PLVVLLSLVFWGWVLGTVGMFLSIPLTVIAKMAFE 321


>gi|330883109|gb|EGH17258.1| permease [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 278

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 92/282 (32%), Gaps = 8/282 (2%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            +++  +  L     P L AL++ +   P+      +   S T   V        + +  
Sbjct: 2   ALLVAFVVLLHTILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVVAVFGLFTLVLMAL 60

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           LL L      ++  L                       G+         +    S     
Sbjct: 61  LLVLVPMLAKQLFRLYELAPQILDWLQHSALPWVQAKFGLADGFWKFDKIKAAISE---- 116

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                 + +  +   A+   +  + +  +++ + +  F+  RD   ++ ++  L      
Sbjct: 117 HMGQAGDIVSVVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIMTGKIRGLLPRQRE 176

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
               K++    +V+ +   G  ++ +G G++  +   L G+   + +GVI  + A++P  
Sbjct: 177 GQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLIGVIAGLAAIVPYM 236

Query: 258 APISFT---AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             +       V+      G+++    +     I   +    L
Sbjct: 237 GFVIGIGSALVAGLFQFGGDLYPMMGIVAVFMIGQALEGMVL 278


>gi|119386571|ref|YP_917626.1| hypothetical protein Pden_3864 [Paracoccus denitrificans PD1222]
 gi|119377166|gb|ABL71930.1| protein of unknown function UPF0118 [Paracoccus denitrificans
           PD1222]
          Length = 356

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 109/336 (32%), Gaps = 24/336 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
             G +  +   +IL  L   +     ++ A+II   +    S+F   K  +      +AT
Sbjct: 13  QTGFLGVIAFGLILFLLVQARFILICLVLAIIIFSLTSDAISAFARLKVPN-----WLAT 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              +    V LL+     + ++ E+VS  ++           LS   G      + T   
Sbjct: 68  TLALIAIAVGLLWAATALVAQVNEVVSTSIVYADRAQAALARLSQRWGPNVQEAIGTFMA 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   +             I      AS      +     + FM     +F      ++  
Sbjct: 128 SIDFA-----------GWIRSAAAQASNLISGSVLILTFVGFMFSERIWFPIKIERLTG- 175

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                +        +    + + +    +    I+     ++ + + + G+    A+ ++
Sbjct: 176 -----DPDQARQVLETVHKIMRRVNRYLVVKAAISAVTAGLIWTIFRVQGLELAGAVAML 230

Query: 248 TAIMAMIPGGAPI--SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           T I+  IP    I  +   +++ L   G+      +        FI+     P L+G  +
Sbjct: 231 TFILNFIPTLGSIAATVITIAMVLAQTGDPTVTLTVGGLTVAVQFIIGNVFDPMLLGQTL 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           +L        L       G+ G F+   +M  I ++
Sbjct: 291 RLSSFGIVLSLAFWGVVWGIAGTFLAVPIMVAIMIV 326


>gi|261838190|gb|ACX97956.1| outer membrane protein [Helicobacter pylori 51]
 gi|317179069|dbj|BAJ56857.1| membrane protein [Helicobacter pylori F30]
          Length = 348

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 125/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|305431582|ref|ZP_07400756.1| acid membrane antigen A [Campylobacter coli JV20]
 gi|304445389|gb|EFM38028.1| acid membrane antigen A [Campylobacter coli JV20]
          Length = 347

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 127/352 (36%), Gaps = 21/352 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +   I+ ++ + LY  KGF   ++ A ++   +    + F+S         ++
Sbjct: 1   MQTGKIFLICFILVVLSLLLYLFKGFLLVIIIASLMAVATSNANAKFLSLTNGRKFLASM 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           + T  ++ LF  P ++        +K     +V    + +             +   L  
Sbjct: 61  LTTACMVLLFFAPFVYAMIELAKALKNFDINLVTQTLNYVK-----------NYQFTLPE 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                   +K    +    +    I  +AS F      + + ++ + I  FF    G  +
Sbjct: 110 SLSFLEPKIKEFLASIDLNSISKQILNYASSFTKSGAKFLIDMVLICIFYFFANLYGTEL 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + S+           I   V  V+      M IIAI +G +        G  + +  
Sbjct: 170 VIYIKSVIPIDKQEL-DDILSEVGNVMAVVLYSMIIIAILQGALFSIIAMFYGYDAILMG 228

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP----- 298
            +      +   G  + +  +S+Y     ++ +A  +F++  + + FI D  ++P     
Sbjct: 229 VIFAVSSLIPALGGALVYIPISLYEFASSSLGSALVIFIYSVVVISFIADTLVKPLIIKW 288

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               LV  P K+  L  F  ++ G+ T G  G+ +GP ++       +  ++
Sbjct: 289 INEKLVKTPAKINELLIFLAMIAGISTFGFWGIILGPAILTFFISTIRLYMI 340


>gi|325292278|ref|YP_004278142.1| hypothetical protein AGROH133_04693 [Agrobacterium sp. H13-3]
 gi|325060131|gb|ADY63822.1| hypothetical protein AGROH133_04693 [Agrobacterium sp. H13-3]
          Length = 394

 Score = 79.6 bits (195), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 42/338 (12%), Positives = 108/338 (31%), Gaps = 17/338 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + +++  ++ L     PV+ A+++G           S     +    +++ +    +F
Sbjct: 65  IFLVVMMAVIHELSLILIPVVLAIVVGMILGIAAEKLSSYGIPGAGVAVILSGLVAAVMF 124

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            V            +  L+  +      G  +     D       S  W    +   S+ 
Sbjct: 125 FV------------INSLIDPLSQLASEGPALIERSMDRFLPYLQSIRWLNISAATFSMG 172

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +S   L +   + I    S            +IF+   L F Y         + +    
Sbjct: 173 SISMESLISRSGEIISLLGSNVT---PAVVQGMIFLAALLMFLYSRLRLRKAIIMAFPAR 229

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I   V +V+ + F    +I    G+ + +  +  G+   +  G+   + + +
Sbjct: 230 HQRLRAIRIIASVEEVLGTYFATAALIYAALGVTMVAIAYFGGLAMPLLWGLFAFLSSFV 289

Query: 255 PGGA--PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P      ++ +     ++   N+  A            +++    P +VG  +++     
Sbjct: 290 PFLGITAMTVSLAVAGIITHDNMVLALLPSAIFFTIHLLMENLAFPAVVGRNMEINPFLV 349

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           F  ++      G  G  +   L  +   + +E   + +
Sbjct: 350 FVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRR 387


>gi|327400680|ref|YP_004341519.1| hypothetical protein Arcve_0788 [Archaeoglobus veneficus SNP6]
 gi|327316188|gb|AEA46804.1| protein of unknown function UPF0118 [Archaeoglobus veneficus SNP6]
          Length = 329

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 107/318 (33%), Gaps = 17/318 (5%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                ++  ++  + + PI      K        ++IAT+ ++    + + +  + G+ +
Sbjct: 26  PLLDGIVMGIVFAYVAKPIKKRVEEKTG--KAAASLIATLLIIVPIFILMFYGIFQGINQ 83

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           +  L +      Q  +   R                           L    + +     
Sbjct: 84  LVYLFTHQHEVEQMLVSTLR--------------DAGIDEKYIEDVRLWIPSVISLAQGK 129

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +   A    +  + + ++ I   I  F+   D  S  ++   +          +    V 
Sbjct: 130 LKISAIDVTIRAVMFFMNFIISAIVCFYVLLDADSFVRKTIRIFPESRQKEIARFIAEVD 189

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + + + + G    A+  GLV    +    +P    L  +  + A+IP  A     A    
Sbjct: 190 ETLLALWFGNFAFAVIIGLVSIPFFMAFRIPYAPLLSGLMFLAALIPVFAEWMVLAPVAL 249

Query: 269 LLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L   N+  A     +      F+ +  LRP+ VG   ++  L      +GG    G+ G
Sbjct: 250 FLALTNLNMAIWFTAIGFLFLYFLPEVVLRPYFVGHASRIHPLALLLAFIGGAMVGGVAG 309

Query: 328 LFIGPVLMALIAVIWKES 345
            F+ P+++A+I  ++   
Sbjct: 310 FFVAPMVVAVITAVYNYY 327


>gi|114766630|ref|ZP_01445582.1| hypothetical protein 1100011001361_R2601_27308 [Pelagibaca
           bermudensis HTCC2601]
 gi|114541170|gb|EAU44223.1| hypothetical protein R2601_27308 [Roseovarius sp. HTCC2601]
          Length = 351

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 97/336 (28%), Gaps = 19/336 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P      + +  I+  L+F +  F  +  A +I   +              +      A 
Sbjct: 9   PDWFKIIVGLPFIIALLWFGRDLFKLLSVAFLIFVLATAFTDRLGRISIRGTAIPGWQAR 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + +FI  +            E++  +    +    + + L  I G            
Sbjct: 69  ALALVIFITTIWLFTVISSAAAAEIIDALPRYQERLGEIIQRLEHIIGARTV-------- 120

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q+++   E     + I F+               L  +F+I+    + +    +S  
Sbjct: 121 ---QAVQTAIEELQVGSLIMFLAGGLVGSMAQVSLLTLYFLFLIVERADWQKKIRLLSS- 176

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                 +     +  I R     I+       + +   G V    +   G+     L ++
Sbjct: 177 -----PNPRGPDFAVIVRRAASGIKDYMWVNAVTSAMSGSVAYVVFRAIGLDFAAFLAIL 231

Query: 248 TAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              +  IP             + L    +++    + +       ++   + P + G  +
Sbjct: 232 IFFVGFIPNIGAFIGILLPALVALAQFDSLWPLLAVIVIYGGADQLISNVVTPMMQGRSL 291

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +        LV      G LG F+   L  ++ VI
Sbjct: 292 NMSTFMITVSLVFWSLLWGGLGAFLAVPLTVIVMVI 327


>gi|15645192|ref|NP_207362.1| membrane protein [Helicobacter pylori 26695]
 gi|8928454|sp|O25291|Y567_HELPY RecName: Full=UPF0118 membrane protein HP_0567
 gi|2313674|gb|AAD07623.1| membrane protein [Helicobacter pylori 26695]
          Length = 348

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 127/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL  I      +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N++K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNEQK 345


>gi|312969715|ref|ZP_07783898.1| UPF0118 inner membrane protein ydiK [Escherichia coli 1827-70]
 gi|310338000|gb|EFQ03089.1| UPF0118 inner membrane protein ydiK [Escherichia coli 1827-70]
          Length = 207

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 1/193 (0%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +    M++     Y  G  ++Q +      L          +  + IR+  LG+ + A+
Sbjct: 1   MVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTAL 60

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
            + ++ G    ++GVP    L V+  +  ++  G         I+L   G+    T L +
Sbjct: 61  VQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLV 120

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           W  +   + D  +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++ 
Sbjct: 121 WSGVVGTL-DNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFA 179

Query: 344 ESIMAIKENKEKI 356
             +  +    ++ 
Sbjct: 180 AWVEEVPPPTDQP 192


>gi|203287479|ref|YP_002222494.1| hypothetical protein BRE_11 [Borrelia recurrentis A1]
 gi|201084699|gb|ACH94273.1| conserved hypothetical integral membrane protein [Borrelia
           recurrentis A1]
          Length = 363

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 110/342 (32%), Gaps = 27/342 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                   ++ +++  L   +  F P+  A+++GF  +PIY+     K        V+  
Sbjct: 17  QSIFYVVALIIMLITILKVAQTIFKPLSIAVLLGFLVYPIYTFLKKLKIPR-----VLII 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +  +    +F +    +  L+ ++    +  I +   + +      A        
Sbjct: 72  FIIFFVLFLFSYLVFSFVYYSVTVLIDQLPYYQKQLIFIIVDILEKYKLDSAIISNIDF- 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                               +I  F +R     + +  S++ + + L+F   +      +
Sbjct: 131 ------------------SKYIYPFLTRISNEIIGFASSLVVLFLLLYFLLSEIHIFDIK 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +  +    + + ++   +   I         ++   GL++     L G        V+
Sbjct: 173 VKNAFKRSVSSMFIEVLSTINNQISKYLGIKVFVSFLTGLLVFIGLKLFGQDFPRVWAVL 232

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           T +   IP    I      +   +     ++     +F++      ++   L P + G  
Sbjct: 233 TFVFNFIPSIGSILAVFFIMIAALVQFYPDLNLVLYIFIYNTFVQMLIGNILEPKMQGHR 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + L        L       G++GL I      +I VI    +
Sbjct: 293 LDLSPFLLLCFLFFWGWLWGIVGLLIAYPFTVIIKVIVDNIV 334


>gi|203283936|ref|YP_002221676.1| predicted permease [Borrelia duttonii Ly]
 gi|201083379|gb|ACH92970.1| predicted permease [Borrelia duttonii Ly]
          Length = 363

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 110/342 (32%), Gaps = 27/342 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
                   ++ +++  L   +  F P+  A+++GF  +PIY+     K        V+  
Sbjct: 17  QSIFYVVALIIMLITILKVAQTIFKPLSIAVLLGFLVYPIYTFLKKLKIPR-----VLII 71

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +  +    +F +    +  L+ ++    +  I +   + +      A        
Sbjct: 72  FIIFFVLFLFSYLVFSFVYYSVTVLIDQLPYYQKQLIFIIVDILEKYKLDSAIISNIDF- 130

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                               +I  F +R     + +  S++ + + L+F   +      +
Sbjct: 131 ------------------SKYIYPFLTRISNEIIGFASSLVVLFLLLYFLLSEIHIFDIK 172

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + +  +    + + ++   +   I         ++   GL++     L G        V+
Sbjct: 173 VKNAFKRSVSSMFIEVLSTINNQISKYLGIKVFVSFLTGLLVFIGLKLFGQDFPRVWAVL 232

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           T +   IP    I      +   +     ++     +F++      ++   L P + G  
Sbjct: 233 TFVFNFIPSIGSILAVFFIMIAALVQFYPDLNLVLYIFIYNTFVQMLIGNILEPKMQGHR 292

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           + L        L       G++GL I      +I VI    +
Sbjct: 293 LDLSPFLLLCFLFFWGWLWGIVGLLIAYPFTVIIKVIVDNIV 334


>gi|32490775|ref|NP_871029.1| hypothetical protein WGLp026 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165981|dbj|BAC24172.1| yb1688 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 356

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 136/338 (40%), Gaps = 3/338 (0%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
              I F++      L  F    + A II  ++WP++         S     ++  + ++C
Sbjct: 17  LIFIFFVLYGCFLILNPFIISFIWASIIVISTWPLFIRIKKFLYNSYFLSILLMEMLLIC 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            FI P+  +         +++S ++  +Q+       +  IP            L + ++
Sbjct: 77  FFIFPVFIVSTSFFKNFSKMISLIITFDQYIFSNLLLIKKIPIIGNKLFNTINILIYEKN 136

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           L +  +       I  I +       +  +   + +  ++   F Y  G  I++ +    
Sbjct: 137 LSLYEK---LEPYITHITKIILSNLTLIWNLFFNCLLTVLFSIFLYFKGNYINKFIKIFI 193

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            ++     K++  +  K IRS F+ + + +I + ++     +++ VP    L ++  I  
Sbjct: 194 YYIDDIKGKELVVLAEKSIRSVFVSVILASIIQTILSSIGLFISNVPFKSILIILIFIFC 253

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +   G    F  + ++   K N   +T LF+W  +   + +   +  +    IKL  L  
Sbjct: 254 ITQLGIFPIFIPIILWFYYKENYIFSTILFVWSCLVFALDNILKQILIKSIGIKLHNLLI 313

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            FG++GG  + G++G+FIGP ++ +   + +      K
Sbjct: 314 IFGILGGFLSFGMIGIFIGPTILTISWNLLRNLTFNYK 351


>gi|281357836|ref|ZP_06244322.1| protein of unknown function UPF0118 [Victivallis vadensis ATCC
           BAA-548]
 gi|281315783|gb|EFA99810.1| protein of unknown function UPF0118 [Victivallis vadensis ATCC
           BAA-548]
          Length = 656

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 66/164 (40%), Gaps = 6/164 (3%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++I   +   +R    G   + + +  V  +A++  GVP    LG++     ++P   PI
Sbjct: 486 QRIIGGMLLKLRVWVRGYLTLMLVDATVYTTAFFFLGVPYFPILGMLAGCGILLPYIGPI 545

Query: 261 SFTAVSIYLLIKGNIFNA-----TCLFLWGAIELFIVDKTL-RPFLVGGPIKLPFLPTFF 314
               +++ + +     +A       +     I   ++++ +  P ++G  + L  L T  
Sbjct: 546 LSAMLTVLVTLAVGGSSATGAQLAAIIAVYLIYNGVIEQFILYPAVIGESLGLTTLETII 605

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            ++ G    G+ G+ +     ++I  +  +      E +   SS
Sbjct: 606 VVLLGAIFAGIPGMILAIPASSIIKYLVPQIYNCFGELRRAPSS 649


>gi|208434487|ref|YP_002266153.1| membrane protein [Helicobacter pylori G27]
 gi|208432416|gb|ACI27287.1| membrane protein [Helicobacter pylori G27]
          Length = 348

 Score = 79.6 bits (195), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 126/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|190890934|ref|YP_001977476.1| putative transmembrane permease protein [Rhizobium etli CIAT 652]
 gi|190696213|gb|ACE90298.1| putative transmembrane permease protein [Rhizobium etli CIAT 652]
          Length = 349

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/350 (10%), Positives = 103/350 (29%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     P+  A+++G        +   K        A + +  
Sbjct: 15  WAIIGIFAILGLAAVYMMSLILIPITLAVVVGMILGLAAENLS-KMGVPRLANAFLLSSG 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  +  +    L         E  +         +P    +  +       E     +  
Sbjct: 74  VALVIALLANSLASPLATLANEAPAFFERTIARIMPYLERIEWLHITPATFESGPMSIGA 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + T+    + +    F  + L     +      +  F      ++    
Sbjct: 134 LLENTGNVLHVVTTSLTPALVQGLIFFAALLLFLASRVNLRKTIIMTFRTRTQRLAA--- 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I +G G+V+    + +G+ + V  G    
Sbjct: 191 -----------IRVINAVEQVLGFYFATASLIYVGLGVVMTIIAYASGLSAPVLWGFFAF 239

Query: 250 IMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP       T       ++                    I++  + P ++G  +++
Sbjct: 240 LSSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLIMENIIFPAVMGRRLEI 299

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  I +E ++  +   +   
Sbjct: 300 NPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEERPQPQLPK 349


>gi|47093861|ref|ZP_00231604.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
 gi|47017770|gb|EAL08560.1| membrane protein, putative [Listeria monocytogenes str. 4b H7858]
          Length = 317

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 98/315 (31%), Gaps = 19/315 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               +L   I  F    + +  + +       + ++    V     V ++      + ++
Sbjct: 1   MIDLILLTFIFAFLVTRLENVILKRVRVPRKLIVIVLYSLVAVFLYVAIVHFLPILINQI 60

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            +LV  +V    +                     T        LK  +       G+DFI
Sbjct: 61  SQLVDSLVKLYNN-----------------PSDNTIVKWIVGFLKESNIQKYLQAGVDFI 103

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               S  G + L + L++I  +       R      Q + S    +F        +    
Sbjct: 104 IASLSGIGSVGLSFFLALILSLFFSLEKERVTSFTGQFMTSKVGFIFKE-AAFFGKKFVS 162

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
                     +IA+    +   A +L   P  ++L ++  ++ +IP    I      + +
Sbjct: 163 TFGVVLEAQLMIALVNTFITTIALYLMDFPQLLSLSIMVFVLGLIPVAGVIISCIPLVLI 222

Query: 270 LIK-GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G   +   + +   I   I    L P L+     LP   TF  L+      G+ GL
Sbjct: 223 AYSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKTNLPVFYTFIILIFSETFFGVWGL 282

Query: 329 FIGPVLMALIAVIWK 343
            +G  +   +  I +
Sbjct: 283 IVGIPVFVFLLDILE 297


>gi|328478802|gb|EGF48377.1| permease [Lactobacillus rhamnosus MTCC 5462]
          Length = 310

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 85/304 (27%), Gaps = 17/304 (5%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
             F    +  +           + V   + V+   I   +      + +   L + V   
Sbjct: 9   FAFLVSRLVHAVQRHVHVRPFVIVVPVYILVILGLIYAAVHYVPAIIHQTITLFNSVQDF 68

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
                     +                    QS K L+ T     G+  +  +A   G +
Sbjct: 69  YNSDAFANNQVMQWVL---------------QSTKSLNLTEQLKTGLSTVLEYAGNIGAM 113

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
            L   LS I                   LDS     F    +  +               
Sbjct: 114 GLTLVLSFILSFFFTIELDSLPAFGQLFLDSPFGWYFKDL-RYFALKFINTFGVVMEAQI 172

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNA 278
            IA+   ++         +P+  +L ++  ++++IP    I     ++I     G   + 
Sbjct: 173 FIAVVNTVITTITLLFMKMPNIPSLAIMVFLLSLIPVAGAIISLIPLTIIGYTVGGWQDV 232

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             + +  A    +    L P  +    +LP   TF  L+   R  G  GL +G  +    
Sbjct: 233 ITILIMIAAIHVLEAYVLNPKFMSSRTQLPVFFTFVVLLVAERLFGTWGLIVGIPIFTFF 292

Query: 339 AVIW 342
             + 
Sbjct: 293 LDVL 296


>gi|312876641|ref|ZP_07736622.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796594|gb|EFR12942.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 371

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 106/343 (30%), Gaps = 13/343 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           I   +I   I    Y +K F          F PV+  L I   S P+      + + S T
Sbjct: 15  IYVILISAFIFSCAYLIKTFDLFVRFVIKAFIPVIIGLFIAEVSEPLLKYLEKR-KVSRT 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + +  +    L    Y  + E   LV+ +   +   I               S
Sbjct: 74  ISAILILIVLNIILGFMLAEGIYILVNECMSLVASLQNIDYDKIYQALDKLFASVKNIYS 133

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    ++  QS        L       +     +     L       F +++ FFF RD
Sbjct: 134 GLPGPIVNFIQSGVDELTNVLNQIATMSL--KVIKVIPATLKGITVWFFSVLSGFFFMRD 191

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L              I+  V   +        I+A+   L       +   P 
Sbjct: 192 RHRMRTWLIQNFSAHLYRELSSIAFKVIDSVVDYAKSQIILAVLMFLSGLIGLSIIKAPY 251

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  ++++IP           I         N     L   + +  + +     +
Sbjct: 252 FLVISLLLGLLSIIPIIGSGIILLPWIVGSFIAGDTNFGLKLLIVYLIILGIREFASIKI 311

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           V   + +    T   +  GV   G  G  +GP+L+  +  +++
Sbjct: 312 VASQVGISTFTTLVSIYAGVEIFGAWGFVVGPLLVVFLKAVYE 354


>gi|253572345|ref|ZP_04849748.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
 gi|251838120|gb|EES66208.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           sp. 1_1_6]
          Length = 235

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 47/218 (21%), Positives = 95/218 (43%), Gaps = 2/218 (0%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            +  +  +PR             +++  M+  L+F    G  +   ++ +      A  +
Sbjct: 18  LSFIVSILPRIGQIIMESISSLAINLFVMVFVLYFMLIGGKKMEAYVNDILPF-NEANTQ 76

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PI 260
           ++   +  ++RS  +G+ ++AI +G V    Y + G P+ + LG +T    +IP     +
Sbjct: 77  EVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLIFGAPNILVLGFLTCFATIIPMVGTAL 136

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
            +  V+ YL + G+ FNA  L  +G I +   D  +R  L         L T FG+V G+
Sbjct: 137 IWFPVAAYLAVTGDWFNAIGLAAYGGIVISQSDNLIRFILQKKMADTHPLITIFGVVIGL 196

Query: 321 RTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              G +G+  GP+L++L  +          + +  + +
Sbjct: 197 PLFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPA 234


>gi|227878057|ref|ZP_03996046.1| permease [Lactobacillus crispatus JV-V01]
 gi|227862344|gb|EEJ69874.1| permease [Lactobacillus crispatus JV-V01]
          Length = 349

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 102/342 (29%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R++++ +I+  LY ++     VL   I  +    +         +  +  
Sbjct: 11  QKFKNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGL 70

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +  + ++ L    +       + ++ ++V  V+   +                  +E
Sbjct: 71  IVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYES-----------------NE 113

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +              F     + FG + +   +S+I          R  
Sbjct: 114 SSRLASHVTRYISKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMI 173

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 + S          +   +               IAI    +         +P  
Sbjct: 174 EFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQI 233

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I++++P    I        +    G I     +F+   I   I    L P  
Sbjct: 234 IALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKF 293

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 294 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 335


>gi|153873737|ref|ZP_02002218.1| permease PerM [Beggiatoa sp. PS]
 gi|152069796|gb|EDN67781.1| permease PerM [Beggiatoa sp. PS]
          Length = 294

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 82/273 (30%), Gaps = 10/273 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             +PQ ++  +++      L  +    AP+L++L+I +    +      +          
Sbjct: 22  FSDPQAVLLAILLLTSFTILMTMSEMLAPILASLVIAYLLDGLIQGLQ-RSHLPRALAVF 80

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I   + + L +  ++ L      +   LV  +      G  + + L +    + A+ +  
Sbjct: 81  IIYSTFITLLVFIIVVLLPLVSYQFTLLVQALPKMIAQGNQLLKDLPEQYPIISATSI-- 138

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 + +    +        + +  ++       +   +  I + + +FFF  D   I
Sbjct: 139 ------EGIIKSLQQRADKLVQEIVLSYSISSIPTVIALVIYSILVPLLVFFFLNDKEKI 192

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L            + I   +   + +   G        G      +    +     L
Sbjct: 193 LNWLAGFLP-KERTAARNIWTEMDAQMGNYIRGKVYEIFLVGTFTYFPFAYLNLNFASLL 251

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
            V+  +  +IP    +  T   + +        
Sbjct: 252 AVLVGLSVIIPYVGAVVITFPVVAVAYFQWGIT 284


>gi|152990120|ref|YP_001355842.1| hypothetical protein NIS_0371 [Nitratiruptor sp. SB155-2]
 gi|151421981|dbj|BAF69485.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
          Length = 347

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 127/357 (35%), Gaps = 22/357 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P   +  + + +    L     F   ++ A+++   S+ ++S F+ K        A  +T
Sbjct: 3   PIHFLGVLFLIVTYFVLKVFYPFLNTMIIAILLALASYKMHSYFMKKLPG-QVLPATAST 61

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             +  +F +P++++       +  +             + +             L     
Sbjct: 62  AVLAFIFFLPIIYIITNAATFVANI----------DFDLLKQTIAQTKNWIVQTLQHNSW 111

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               SL+   E F   N I+++ + A+  G    ++   I  ++I  FF    G  +   
Sbjct: 112 IKSDSLQKYFEQFDIQNIINWVIQTATFLGKKSANFFKDIFLILIFYFFANLYGKDLLLY 171

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++         K +   +  V+   F  +   A+ EG++ G    + G    +   + 
Sbjct: 172 FQNIIPFR-KEDSKLLFENLAGVMGVVFNSIIATAVLEGILFGIIVQIYGYNGIMLGILY 230

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL----------R 297
                +   G  I +  ++++     N   A  + L+  I +  +  T+          +
Sbjct: 231 GFASLIPVIGGIIMWLPITLHQYFLDNTTGAIVIALYSIIVISGIADTIIKPIIIKYIDQ 290

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             +    +++  L  FF +V G+ + G  G+ IGP ++ L   I K      K  +E
Sbjct: 291 VMIEDEHVRINELLIFFSIVAGLTSYGFWGMIIGPAVITLFISILKIYPKITKLERE 347


>gi|114769756|ref|ZP_01447366.1| transporter, permease [alpha proteobacterium HTCC2255]
 gi|114549461|gb|EAU52343.1| transporter, permease [alpha proteobacterium HTCC2255]
          Length = 345

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 89/279 (31%), Gaps = 17/279 (6%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + V+ +F+  +  + +     ++  +S++ +   +   V   L++  G + A  L     
Sbjct: 65  LVVLLIFVSIVALISFMISNNIEYTLSQLPIYQTNLQIVVDNLAEGFGLINAPSLNKIIE 124

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           +  +S+ + S  F     I  +                      +   F   +  + + +
Sbjct: 125 NWWKSIDLQSFAFRAFGSISSVGSILF--------------MTALYAGFLLTEVNNFNAK 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +             +I   V   I       TII I    +     W+ G+ S V   V+
Sbjct: 171 ISKALGGDA-TQALEIISKVNNRIGVYLTIKTIINIILASISFLIMWVMGIDSAVFWAVM 229

Query: 248 TAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              +  IP           V + L   G++  A    +        V   L P ++G  +
Sbjct: 230 IGFLNYIPYVGSAIGVGFPVGLALAQFGSLQWAILALVLLMAVQTYVGNILEPKMIGKSV 289

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L        LV      GL G  +   L + + ++  E
Sbjct: 290 NLSSFVVLLALVFWTTIWGLPGAILSIPLTSALVILLAE 328


>gi|73670492|ref|YP_306507.1| hypothetical protein Mbar_A3035 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397654|gb|AAZ71927.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 349

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/338 (11%), Positives = 108/338 (31%), Gaps = 24/338 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      I+ + +  +      V  ++       P+      +         V++ +
Sbjct: 16  KILLYSTAAVILTIGMREIASILTVVFFSVFTALIFTPLVRWLKQRGIPG-----VLSVI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ LF + +L L    +    +  S++ +       +   L+          +      
Sbjct: 71  LVILLFTLIILVLGIIVVEAALQFGSQIPIYQAQLTELVNNLAKYVPSYEEFSI------ 124

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       +  + +       +      ++   ++  +I+   F   D  +  +++
Sbjct: 125 ----------QSILRSMVSITISLMANTVNGIVNAGATVGIIIVTAAFLLIDAANNPEKV 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           DS          +       K +    +    I +   + +    ++ G+   +  GV+ 
Sbjct: 175 DSEIGKQSELRLR--MSKFSKKLVKFIVIRAEINLITAITIALLLFIGGIDYAILWGVLI 232

Query: 249 AIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +++ IP    +       +  L K     A  + L   I   + +  L P L+G  ++L
Sbjct: 233 FLLSYIPYIGLVIASVPPIMLALFKYGPLGAIAVILIIVIVDALAENVLFPSLMGKGLQL 292

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                F  L+      GL G+ +   L  ++ +I +  
Sbjct: 293 SPAFLFLALLYWNFVFGLGGVLLSIPLTIVLKIILESF 330


>gi|213854554|ref|ZP_03382794.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 253

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 81/242 (33%), Gaps = 7/242 (2%)

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
             +P++ S +   +   E W +      S+  L++       +  +    ++        
Sbjct: 1   RTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMSSI 60

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L ++ ++  L    +    + Q +        P       +     +    +  T I+I
Sbjct: 61  FLLLLTVVFMLLEVPQLPEKLQQMMSR------PVEGMAAIQRALDSVSHYLVLKTAISI 114

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLF 282
             GLV         V      G++   +  IP    +      I  +L+    ++A  + 
Sbjct: 115 VTGLVAWGMLAALDVRFAFVWGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVL 174

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               +   +    L P ++G  + L  L  F  L+     +G +G+ +   L  ++ +  
Sbjct: 175 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIAL 234

Query: 343 KE 344
           ++
Sbjct: 235 EQ 236


>gi|320658774|gb|EFX26448.1| pheromone autoinducer 2 transporter [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 276

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 79/275 (28%), Gaps = 17/275 (6%)

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   + 
Sbjct: 1   MTIIVMAMVLLLAYLGSTLNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYI 60

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                ++        +           +  L   L +  +                    
Sbjct: 61  DPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFKQMMA----------- 109

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                 P       +     +    +  T I+I  GLV  +      V      G++   
Sbjct: 110 -----RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFA 164

Query: 251 MAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP     ++       +L+    + A  +     +   +    L P ++G  + L  
Sbjct: 165 LNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLST 224

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 225 LVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 259


>gi|210134768|ref|YP_002301207.1| outer membrane protein [Helicobacter pylori P12]
 gi|210132736|gb|ACJ07727.1| outer membrane protein [Helicobacter pylori P12]
          Length = 348

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 125/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGI-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|229094550|ref|ZP_04225617.1| hypothetical protein bcere0021_52530 [Bacillus cereus Rock3-42]
 gi|229124941|ref|ZP_04254116.1| hypothetical protein bcere0016_52190 [Bacillus cereus 95/8201]
 gi|229187667|ref|ZP_04314804.1| hypothetical protein bcere0004_51990 [Bacillus cereus BGSC 6E1]
 gi|228595821|gb|EEK53504.1| hypothetical protein bcere0004_51990 [Bacillus cereus BGSC 6E1]
 gi|228658505|gb|EEL14170.1| hypothetical protein bcere0016_52190 [Bacillus cereus 95/8201]
 gi|228688797|gb|EEL42628.1| hypothetical protein bcere0021_52530 [Bacillus cereus Rock3-42]
          Length = 321

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 97/334 (29%), Gaps = 23/334 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLL 79
           LY L+     +L   I+ +           K       +   +     V ++    + L 
Sbjct: 2   LYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIAITLF 61

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                  +++ +L+ +  +  ++                 + +    LS      +    
Sbjct: 62  KYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILY 115

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              TN   F  +      +           +     F          ++           
Sbjct: 116 KSITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYTEI----------- 164

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP    
Sbjct: 165 -EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGV 223

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I     + +     G I     + +   +   +    L P  +     LP   TF  L+ 
Sbjct: 224 IISLFPLCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIF 283

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               +G+ GL IG  +   +  +   +   ++++
Sbjct: 284 SEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 317


>gi|323204641|gb|EFZ89639.1| permease PerM [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
          Length = 279

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/272 (10%), Positives = 88/272 (32%), Gaps = 10/272 (3%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +      + ++  +     +    +  +    +          + ++ + + +FF  +D 
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLVGLLT--------LAVYLVLVPLMVFFLVKDK 180

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             +   +  +          ++   + + I +   G  +  +  G+     + L G+   
Sbjct: 181 EQMLNAVRRVLP-RNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYS 239

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
           + L V+     +IP       T   + + +  
Sbjct: 240 LLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQ 271


>gi|311071117|ref|YP_003976040.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
 gi|310871634|gb|ADP35109.1| putative integral inner membrane protein [Bacillus atrophaeus 1942]
          Length = 341

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/338 (15%), Positives = 105/338 (31%), Gaps = 23/338 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS----SFISKKEESSTFLAVI 65
           G+ R+++  ++   LY  K     +L   I  F    + +            S   +  +
Sbjct: 12  GVRRFLVFVVLAGVLYLFKSMINLILLTFIFTFLMNRLENVVRHFLNRFFRVSQRGIITL 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +++     V     +     ++++L+ ++     H   +P               + +
Sbjct: 72  LYIALAVGLTVGGFVFYPVVAAQIEQLIKQIKYIAYHPNSIP--------------FFDE 117

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +    + I S      N +       S FG+  +   +  +F +              
Sbjct: 118 VSNVFGDINISSYVKEAFNVLYTYLADISTFGLQIVMALILSMFFLFEKKRLSEFMEKFK 177

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
               ++  + F            +          IIA+   ++   A W+   P    L 
Sbjct: 178 TSKLAVFYNEF----AFFGGKFARTFGKVLEAQFIIALVNCILTFIALWIMHFPQLFGLS 233

Query: 246 VITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           ++   + +IP     IS   +SI     G       + L       I    L P L+   
Sbjct: 234 IMVFFLGLIPVAGVVISLVPLSIIAYSTGGGMYVLYIVLVIMAIHAIETYFLNPKLMSAK 293

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +LP   TF  L+     +G+ GL IG  +   +  I 
Sbjct: 294 TELPIFFTFTVLIFSEHFLGIWGLIIGIPIFVFLLDIL 331


>gi|188527586|ref|YP_001910273.1| membrane protein [Helicobacter pylori Shi470]
 gi|188143826|gb|ACD48243.1| membrane protein [Helicobacter pylori Shi470]
          Length = 348

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 128/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IASSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL  I      +E  +   +
Sbjct: 62  VLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G+     G        +  
Sbjct: 171 LGVLPLGI-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|315037276|ref|YP_004030844.1| permease [Lactobacillus amylovorus GRL 1112]
 gi|325955754|ref|YP_004286364.1| permease [Lactobacillus acidophilus 30SC]
 gi|312275409|gb|ADQ58049.1| putative permease [Lactobacillus amylovorus GRL 1112]
 gi|325332319|gb|ADZ06227.1| permease [Lactobacillus acidophilus 30SC]
          Length = 345

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 107/342 (31%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   +   + R ++  +I+  LY ++     +L   I  +    +         +  +  
Sbjct: 6   QKFKDNVPLRRVVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIRLVQRYIPKMPTGI 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+  + ++ L    +       M+++ ++V  V+   +                   E
Sbjct: 66  IVVVTYLIILALLYFVITVYLPMLMVQISKMVKSVMAFYES-----------------DE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +          + + F    A+  G + +   +S+I          +  
Sbjct: 109 SLRLMSYVTRYISKGELIEQAKHAMTFAFHTATNIGTLTIATFMSLILSFFYTIELKKMR 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  + S              +             ++IAI    +      +  +P  
Sbjct: 169 EFSSLFVKSGYFKWLFEDICYFGKKFTNTFGVVLEAQSLIAICNTALTMIGLAIMRMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           VALG++  I++++P    I     +SI     G I     +F+   I   +    L P  
Sbjct: 229 VALGLMVFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +      + 
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGSWGLIVGVPIFTFFLDVL 330


>gi|313609746|gb|EFR85213.1| permease [Listeria monocytogenes FSL F2-208]
          Length = 164

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 52/136 (38%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K I +      I  +  GL     Y + G P  +  G I     +IP   P    A +
Sbjct: 1   MNKTISTYISSQAIDCMFVGLFTFIGYLIIGQPYALLFGFIAGATNIIPYLGPFLGAAPA 60

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           + + +  +   A  + +   I   I    L P+++G  + +  L     L+      G+ 
Sbjct: 61  VIVALFTSPVQALLVIVVVTIVQQIDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGIF 120

Query: 327 GLFIGPVLMALIAVIW 342
           G+ +G  L A++  I 
Sbjct: 121 GMILGVPLYAVVKTII 136


>gi|308061898|gb|ADO03786.1| membrane protein [Helicobacter pylori Cuz20]
          Length = 348

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 128/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--IVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL  I      +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G+     G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|73670522|ref|YP_306537.1| hypothetical protein Mbar_A3067 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397684|gb|AAZ71957.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 354

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/338 (10%), Positives = 104/338 (30%), Gaps = 24/338 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++      I+ + +  +      V  ++ +     P    F  K       + ++  +
Sbjct: 11  EILVYSTFAVILTIGMREISSILTTVFFSIFVALILTPSVRWFKRKGIPGILSMLLVILL 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +  ++ +         ++ +++         +   L                L 
Sbjct: 71  LTLIISLFGVVIVGAAI-----QIGNQLPNYQSQLTEILDEL----------------LP 109

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +  S + LS   +                   ++   ++  +I+   F         ++ 
Sbjct: 110 YLPSTEDLSLQSVFRGITSLAISLTVSVLNGLINAGTTVGIIIVTAAFLLLGAAGAQEKK 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +   E       +       K +    +  T + +   + +     + G+   V  G++ 
Sbjct: 170 EQKAEEQL--VIESRLNKFGKGLIEFIVIRTEVNLVTAIGIAVILLIGGIDFAVFWGILA 227

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++    + + L++     A  + +  +I   + +  + P L G  +KL
Sbjct: 228 FFLGYIPYIGLALTTIPPAFFGLLQYGFVGALAVIIAISIVNALTENVIFPSLAGKGLKL 287

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                F  L+     +G  G+ +   L  ++ +I    
Sbjct: 288 SPAIVFLSLLYWNYVLGATGMLLATPLTMVLKIILDSF 325


>gi|217032380|ref|ZP_03437875.1| hypothetical protein HPB128_25g28 [Helicobacter pylori B128]
 gi|298736258|ref|YP_003728784.1| hypothetical protein HPB8_763 [Helicobacter pylori B8]
 gi|216945947|gb|EEC24563.1| hypothetical protein HPB128_25g28 [Helicobacter pylori B128]
 gi|298355448|emb|CBI66320.1| conserved hypothetical membrane protein [Helicobacter pylori B8]
 gi|317012381|gb|ADU82989.1| hypothetical protein HPLT_02815 [Helicobacter pylori Lithuania75]
          Length = 348

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 126/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--VVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPA 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFSAASITGYLLKISSYVGRYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGI-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGVMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|213018765|ref|ZP_03334573.1| hypothetical protein C1A_538 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995716|gb|EEB56356.1| hypothetical protein C1A_538 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 225

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 77/193 (39%), Gaps = 2/193 (1%)

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
               I   ++  F+  RD  +I ++ + L   L+          V  +I +   G   + 
Sbjct: 28  MVSLIAITLVVFFYVLRDWPAIVEKANKLIPILYREKAAGYFSKVDFIISNYLKGQLNVC 87

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--NIFNATC 280
           I   +       + G+   VA+G+++  +  IP   P+ +T +     I      F +T 
Sbjct: 88  IVMMIFYSVGLSIIGLKHSVAIGILSGTLTFIPYIGPLLYTIIGFLSAITQFSGWFESTA 147

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + L  ++   I    L P L+G  + +       G+V      G +G+     ++A+ +V
Sbjct: 148 VLLLFSVGQLIDSSILVPLLIGKKVHIHPTIIILGVVICTSYFGFIGILFFIPIIAMFSV 207

Query: 341 IWKESIMAIKENK 353
           + + ++    E++
Sbjct: 208 LVEYAVNKYFESE 220


>gi|315586748|gb|ADU41129.1| membrane protein [Helicobacter pylori 35A]
          Length = 348

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 58/356 (16%), Positives = 125/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  VLASVLIVPLYFIIYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G+     G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+     + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNETIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|222528450|ref|YP_002572332.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222455297|gb|ACM59559.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 371

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 57/343 (16%), Positives = 105/343 (30%), Gaps = 13/343 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           I   +I   I    Y +K F          F PV+  L I     P+      K + + T
Sbjct: 15  IYVIIISAFIFSCAYLIKTFDLFVRFMIKAFIPVIIGLFIAVVFEPLLKYME-KNKVNRT 73

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + +  +    L    Y  + E   LV+ +   +   I               S
Sbjct: 74  ISAILILIVLNIILGFMLAEGIYILVNECMRLVASLQNIDYDKIYQALDKLFSNVKNIYS 133

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    ++  QS        L       +     +     L       F +++ FFF RD
Sbjct: 134 GLPGPIVNFIQSGVDELTNVLNQIATMSL--KVIKVIPATLKGVTVWFFSVLSAFFFMRD 191

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L              I+  V   +        I+AI   L       +   P 
Sbjct: 192 RHKMRSWLIQNFSVQIYKELSSIAFKVIDSVVDYAKSQIILAILMFLSGLVGLSIIKAPY 251

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  +M++IP           I         N     L   + +  + +     +
Sbjct: 252 FLVVSLLLGLMSIIPIIGSGIILLPWIAGSFIAGDTNFGIKLLIVYLIILGIREFASIKI 311

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 312 VANQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 354


>gi|20091469|ref|NP_617544.1| transmembrane protein [Methanosarcina acetivorans C2A]
 gi|19916615|gb|AAM06024.1| transmembrane protein [Methanosarcina acetivorans C2A]
          Length = 335

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 101/326 (30%), Gaps = 17/326 (5%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +    +L  +  +     P+L A++IG    P+      ++        V+  + +    
Sbjct: 11  LAASTVLSVIATVSSITVPLLVAVVIGIVFRPLVDILEQRRV-PRNIGTVLTMLFIFLGV 69

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
               + L    + +  E+V ++                         L  +      +  
Sbjct: 70  AALFVILIKGFIDQGAEIVLQLEAGWASLQAWL--------------LQFQVKEETLNSI 115

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             + +         I    S      +   + I F +  LFF  RDG  I   L     +
Sbjct: 116 SAAVSNSLPALGQGIIGLFSSTFSSAIALLIGIYFSVFILFFILRDGPEIEVWLARQF-N 174

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L P     I   + + IR  F G  I A    +V+     +  VP   ++ ++    + I
Sbjct: 175 LKPGTGAAIVADISRSIRLYFRGTAITAAITAIVVVIPLIILKVPLIGSILILYFFTSFI 234

Query: 255 PGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           P     I      I     G    A  + +   I    +   +  + +G  +K+  L  F
Sbjct: 235 PYIGAFIGGAFAVIIAFGSGGPETALIIAVAVTISNGALQNAINTWALGTTLKIHPLVVF 294

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIA 339
              +      G L + +   L A++ 
Sbjct: 295 LVTIASGVVGGFLAMILAVPLTAVVV 320


>gi|307707519|ref|ZP_07644001.1| putative permease [Streptococcus mitis NCTC 12261]
 gi|307616471|gb|EFN95662.1| putative permease [Streptococcus mitis NCTC 12261]
          Length = 172

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/167 (20%), Positives = 64/167 (38%)

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +           I ++  +      +   I A+  G+++   Y L G+P  V  G+ 
Sbjct: 6   LKVIFPEKVVTKLTYIGQVALETYDQFLMSQLIEAVIIGVMIAVGYSLFGLPYGVMTGIF 65

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +++ IP   P+    V    +   +   A    L   +   I    + P +VG  I L
Sbjct: 66  AGVLSFIPYVGPMIACVVGAIFIFTVSPTQALLSLLLYQVIQLIEGNLIYPRVVGQSIGL 125

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           P + T      G    GLLG+     + A+I  + KE ++A +   +
Sbjct: 126 PAIFTLAAASIGGNLFGLLGMIFFTPIFAVIYRLVKEFVVAKENQLD 172


>gi|86356870|ref|YP_468762.1| putative permease protein [Rhizobium etli CFN 42]
 gi|86280972|gb|ABC90035.1| putative permease protein [Rhizobium etli CFN 42]
          Length = 349

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 107/350 (30%), Gaps = 17/350 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  +   + L ++Y +     PV  A+++G        +   K        A + + S
Sbjct: 15  WAIIGIFTILGLAAVYMMSLILIPVTLAVVVGMILGLAAENL-GKMGVPRLANAFLLSSS 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  + ++ +  L         E  + V       +P    +  +       E     +  
Sbjct: 74  VALVIVLLVSSLADPLTTLANEAPAFVERTISRIMPYLERIEWLHITPATFESGPMSIGA 133

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                      + T+    + +    F  + L     +      +  F      ++    
Sbjct: 134 LLENTGNVLHVVTTSLTPALVQGLIFFAALLLFLASRVNLRKTIIMTFRTRTQRLAA--- 190

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                       ++   V +V+   F   ++I IG G+V+    + +G+ + V  G    
Sbjct: 191 -----------IRVINAVEQVLGFYFATASLIYIGLGVVMTVIAYASGLSAPVLWGFFAF 239

Query: 250 IMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           + + IP       T       ++                    +++  + P ++G  +++
Sbjct: 240 LSSFIPYLGITLMTLSVAIAGIITYDGFIVGLMPAAAFFTVHLVMENLIFPAVMGRRLEI 299

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                F  ++      G +G  +   L  ++  I +E ++  K   +   
Sbjct: 300 NPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTIIEELLIEEKPQPQLPK 349


>gi|317177600|dbj|BAJ55389.1| membrane protein [Helicobacter pylori F16]
          Length = 348

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 124/356 (34%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E      +
Sbjct: 62  VLASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLLHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGM-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|255027256|ref|ZP_05299242.1| hypothetical protein LmonocytFSL_14618 [Listeria monocytogenes FSL
           J2-003]
          Length = 323

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 54/337 (16%), Positives = 108/337 (32%), Gaps = 19/337 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ V LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G   +   + +   I   I    L P L+
Sbjct: 227 SLSIMVFVLGLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                LP   TF  L+      G+ GL +G  +   +
Sbjct: 287 SSKTNLPVFYTFIILIFSETFFGVWGLIVGIPVFVFL 323


>gi|228942585|ref|ZP_04105119.1| hypothetical protein bthur0008_52140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975517|ref|ZP_04136071.1| hypothetical protein bthur0003_52620 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228784198|gb|EEM32223.1| hypothetical protein bthur0003_52620 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817084|gb|EEM63175.1| hypothetical protein bthur0008_52140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 321

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 97/334 (29%), Gaps = 23/334 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLL 79
           LY L+     +L   I+ +           K       +   +     V ++    + L 
Sbjct: 2   LYGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKIIIAFLYVMLIGGIAITLF 61

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                  +++ +L+ +  +  ++                 + +    LS      +    
Sbjct: 62  KYLPVLTIQISQLIYQFNVFLRNPPD------SELIRYAVNAVNHMELSKYVGQGVDILY 115

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              TN   F  +      +           +     F          ++           
Sbjct: 116 KSITNVGKFGLQVLLSLILSLFFLLEKSRIVGFTAKFKESRLAIFYTEI----------- 164

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            +   +   +          +IA+   ++   A W+ G P  + L ++  ++ +IP    
Sbjct: 165 -EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGV 223

Query: 260 ISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
           I     + +     G I     + +   +   +    L P  +     LP   TF  L+ 
Sbjct: 224 IISLFPLCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIF 283

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
               +G+ GL IG  +   +  +   +   ++++
Sbjct: 284 SEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 317


>gi|295424993|ref|ZP_06817702.1| integral membrane protein [Lactobacillus amylolyticus DSM 11664]
 gi|295065311|gb|EFG56210.1| integral membrane protein [Lactobacillus amylolyticus DSM 11664]
          Length = 345

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 105/342 (30%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   +   + R ++  +I+  LY ++     +L   I  +    +         +  +  
Sbjct: 6   QKFKDNVPLRRVVVFLLIVACLYEMRAMMNTILLTFIFTYVIVHLIRLVQRYIPKMPTGI 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + V+  + ++ L    +       ++++ ++V  V+   +                   E
Sbjct: 66  IVVVMYLIILALLYFIITVYLPMLVVQISKMVKSVMAFYES-----------------DE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +          + + F    A+  G + +   +S+I          +  
Sbjct: 109 SLRLMSYVTRYISKGELIEQAKHAMTFAFHTATNIGTLTIATFMSLILSFFYTIELKKMR 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
              S  + S              +               IAI    +      +  +P  
Sbjct: 169 EFSSLFVKSGYLKWLFEDICYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAIMRMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           VALG++  I++++P    I     +SI     G I     +F+   I   +    L P  
Sbjct: 229 VALGLMVFILSLVPVAGVIISLIPLSIVGYSVGGIRYVIYIFIMIMIIHAVEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +      + 
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFFLDVL 330


>gi|217977228|ref|YP_002361375.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
 gi|217502604|gb|ACK50013.1| protein of unknown function UPF0118 [Methylocella silvestris BL2]
          Length = 345

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/346 (13%), Positives = 94/346 (27%), Gaps = 24/346 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +     +I F+++ +LYF    F PV  AL      WP+  +  ++         + 
Sbjct: 4   SVTRIASAMIIAFLVVGALYFADAVFEPVAFALFAIAVVWPLQKALETRL--PRGLALIA 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +  + + +     + + G    + L +             +WL      +        
Sbjct: 62  TVLVTLIVVVKLTSMVAWGGGQIGQWLSANFDRFQALYFAWAKWLEQHDIFIATVVAERF 121

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           ++     L       L +     +  F      +      S                   
Sbjct: 122 NVLWLLRLFQTVALRLNSLIGFSLLIFIFLAMGLLEAEAFSKNL---------------- 165

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                                  +  R   L  T+ +I  GL++     L G+    A G
Sbjct: 166 ----RTVGGEAGERLIAAGAATARKFRRYMLVRTVASILTGLIVWGFATLVGLELAAAWG 221

Query: 246 VITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           VI+  +  IP   P+              G+      +     +  F++     P     
Sbjct: 222 VISFALNYIPFIGPLIATVLPALFGFAQTGSWETGLLILAVLTLVQFLIGSYFEPLFTAK 281

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            + +      F +       GL G FIG  ++     + ++   + 
Sbjct: 282 TLSISPFAVVFAVFFWGFIWGLPGTFIGVPILIACVTVCEQFPASR 327


>gi|315231402|ref|YP_004071838.1| hypothetical protein TERMP_01640 [Thermococcus barophilus MP]
 gi|315184430|gb|ADT84615.1| hypothetical protein TERMP_01640 [Thermococcus barophilus MP]
          Length = 327

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 136/346 (39%), Gaps = 29/346 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     +   +++ I+ ++   +    +P+  A I+ +  +PI+    S+     + L +
Sbjct: 1   MKAELLVWGGIVIAILYLAWSTVSQLLSPIFFAAILTYAVYPIHKHLSSRLSIKKSALIL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A + ++   I   L L +  +         ++   +  I    W          + +  
Sbjct: 61  TAFLILIATGITIELILIFKNV---------LMSFYEDVIAFISWSQTFTFPFGLTNVIQ 111

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K                          +   +      Y L ++  ++  ++F     +I
Sbjct: 112 KFY---------------AQFTPKFSEYILSYTFSIPKYLLQLVIFVVMFYYFLVSSEAI 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSH 241
            +Q+  L          K+ +     +++      ++ I +G+++   + +     VP+ 
Sbjct: 157 RRQISLLLPQENKELANKLLKRADLTLQALIRAWLLLNIAKGILMTLGFIVFQVSDVPTA 216

Query: 242 VALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
           V  G +T + + +P     + + A +IYL   GN+  A  L ++G + +  + D T+RP 
Sbjct: 217 VIAGFLTVLFSFVPLFEGWMIWLAGAIYLFKNGNVITAILLAVYGFVFVSPLPDFTVRPK 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           LV    +L  +    G++GG  + G+ GL IGP+++ L+  + KE 
Sbjct: 277 LVAKGAQLDEVMVLVGMIGGAWSFGVKGLIIGPIVLNLVVALLKEW 322


>gi|308063643|gb|ADO05530.1| membrane protein [Helicobacter pylori Sat464]
          Length = 348

 Score = 78.9 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/356 (16%), Positives = 128/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL  I      +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G+     G        +  
Sbjct: 171 LGVLPLGI-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGAMIVWFGHDGWPLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|94986915|ref|YP_594848.1| permease [Lawsonia intracellularis PHE/MN1-00]
 gi|94731164|emb|CAJ54526.1| predicted permease [Lawsonia intracellularis PHE/MN1-00]
          Length = 346

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 123/341 (36%), Gaps = 4/341 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           + R + +  I      L  F      A  +   S+P +     K   S  +  VI T+ +
Sbjct: 1   MTRILSLLSIGAWFLLLWPFPVTTFLATSMACVSYPYFLKLTQK--ISRYWAIVIYTICL 58

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L ++PL+      + +    +  +    + G         +   +         L   
Sbjct: 59  SLLILLPLIITISLIVPQAVAGLKILDQLREPGFLQSINADQMLDSIDRWLKEIPGLEGG 118

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 S   +  +    +               L+I   I+       +   +   +  
Sbjct: 119 VKQLASSIAGIVGSVTRSVLAGGLGIAGGAFHAVLTIFIFIMVTVLCITNAELLYTMI-R 177

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +  +       +    +   I    +G+ +++I +G + G  + +A VP     G+ITA 
Sbjct: 178 ITSNFSYEVLNRFIVTIRNAIFGVLVGIVLVSIIQGFLCGIGFAVANVPQPAFWGLITAF 237

Query: 251 MAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +A IP     + +  V I+L ++G       + +W  I +  VD  LRPF +   I    
Sbjct: 238 VAPIPFVGTSLVWIPVCIWLWLQGETVAMVAMIIWCVIVVAGVDNLLRPFFLKTGIDATL 297

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +     ++ G+   G +G+  GP+L+A+     KES+ A++
Sbjct: 298 IALILSILCGLAAFGPVGIVAGPILVAIAIQASKESLQALQ 338


>gi|269962255|ref|ZP_06176608.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833086|gb|EEZ87192.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 338

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 78/247 (31%), Gaps = 3/247 (1%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I   +I FI++V  +    F   +L AL++    +PI     +K + +S   A +  ++ 
Sbjct: 58  IRFSVIAFIVIVCCWAFLPFLPILLWALVLAIALYPIKQYLQAKTKWTSARTATLIALAG 117

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L   P   +      +  +                  + D P             S  
Sbjct: 118 VLLLGGPTAMVGNSFATKTFDAYEAYQEGTLVVSKPSETVQDWPVIGEELYDVWNEASEN 177

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
               +            +I   AS           +II   I L +      SI +   S
Sbjct: 178 LPSFVEKRQPQIKTLFSWIGDKASGAAKSVFLLIGAIIIAGIMLAWSQPATHSIQKIFIS 237

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      ++  +    IR   +G+  IA    +  G+   L+GVP+     +I  +
Sbjct: 238 FSGKARGP---ELHALTTATIRQVAIGIIGIAFLTAMTFGATVALSGVPAAALFTLIALV 294

Query: 251 MAMIPGG 257
            A++   
Sbjct: 295 FAIVQLP 301


>gi|118086653|ref|XP_419042.2| PREDICTED: similar to chromosome 9 open reading frame 5 [Gallus
           gallus]
          Length = 901

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 83/251 (33%), Gaps = 15/251 (5%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA------SR 155
           H      WL DI      +     ++    S+       +  N                 
Sbjct: 610 HINRQNSWLGDILDWQDVASFVHDNIETFLSILESLWIVMSRNVSLLFTTVTTLVTILFH 669

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVI 211
            G   L++ LS++  +  LF+         +    + SL     P     I    V + I
Sbjct: 670 SGTALLNFVLSVVIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIVGQSVEEAI 729

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 730 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAIPAVLDLW 789

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 790 LVQGEGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 846

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 847 IGPILLCILVV 857


>gi|220930704|ref|YP_002507613.1| hypothetical protein Ccel_3344 [Clostridium cellulolyticum H10]
 gi|220001032|gb|ACL77633.1| protein of unknown function UPF0118 [Clostridium cellulolyticum
           H10]
          Length = 343

 Score = 78.5 bits (192), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/325 (13%), Positives = 107/325 (32%), Gaps = 15/325 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +++ + +   R +I+    + +Y L+G     L   I  +  +   S    + +  ++ +
Sbjct: 5   KSIFSKKITRRILILAAFALLIYLLRGMANMFLLTFIFAYLGYTAQSYVFRRTKIINSRV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                ++   + +   + L          L   + +       +    +      + +E 
Sbjct: 65  LKAIIITFYLVAVTLAVLL----------LYRYIPVIISEFKTLINQATTFYNMTYENET 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +S  + +KI S        +        + G  F+   +  +F I+      R   
Sbjct: 115 LNYFISLSKEIKISSYIQDNFEVLYKSISNIGKLGFDFVMAIVLSLFFILEKNRIVRFTS 174

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                  S+       + +K  +   KVI++       I+    ++     ++   P   
Sbjct: 175 GFKNSKRSIVYDELSFFGRKFVQSFGKVIQT----QITISFINAILSMIMLYILKFPQIF 230

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            LG +  I+ ++P     IS   +++     G       + +   I   +    L P L+
Sbjct: 231 GLGFMIFILGLVPVAGVVISLVPLAMIAFRIGGPTMIVYVLVLVTILHALESYILNPKLM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLL 326
               KLP   TF  L+     +G+ 
Sbjct: 291 SHKTKLPVFYTFVVLIVSEHILGIW 315


>gi|297626024|ref|YP_003687787.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921789|emb|CBL56349.1| Hypothetical membrane protein [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 397

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 93/290 (32%), Gaps = 21/290 (7%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
               FAP+  AL +  T++P+++  + K   S       A V  + L       +    +
Sbjct: 71  FGSTFAPMFLALNLMVTAYPLHTWLVRKGCPSPLSAVTTALVVFVVLLA-----MVAGLV 125

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             + E V+ +         +  W  D    +   +                    K+   
Sbjct: 126 WSVNETVTLLPQYADEFTGLFNWFIDRAAQLGFDQ-------------ASLMQAFKSIDP 172

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           + I   AS        +   +  ++  L F   D    + ++         +        
Sbjct: 173 NSIFSAASSVLNGASGFVAMLAILVTTLVFMAMDTSGFAARIR--IAGATHSRMVTGLVS 230

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
             + IR  ++  ++  +   ++   A  + GVP  +  G+++ +   IP    +      
Sbjct: 231 FSRGIRRYWVVTSVFGLIVAVLDVIAVAIIGVPLPIVWGLLSFLTNYIPNIGFVVGLIPP 290

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
           ++  L+      A  + +   +  F+V   ++P   G  + +    +F  
Sbjct: 291 ALVALVALGWKQALVVVVLYCVLNFVVQSIIQPRFTGESVGVTPTISFIS 340


>gi|187925974|ref|YP_001892319.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
 gi|241665458|ref|YP_002983817.1| hypothetical protein Rpic12D_3888 [Ralstonia pickettii 12D]
 gi|187727728|gb|ACD28892.1| protein of unknown function UPF0118 [Ralstonia pickettii 12J]
 gi|240867485|gb|ACS65145.1| protein of unknown function UPF0118 [Ralstonia pickettii 12D]
          Length = 439

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 89/323 (27%), Gaps = 20/323 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  M  + +   LV L + + F  P+   +++ F   P+               AVI   
Sbjct: 48  RLAMVLVAIGGTLVFLQWARVFLVPLTFGVVLAFALNPLVVRLQHWYVPRPVAAAVIVLG 107

Query: 69  SVMCLFIVPLL-------------FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +    V                         +  +  ++  A      V   +     
Sbjct: 108 LWLAGGAVVFGMQDGVSAVAERVPLAAERMAESVDRVRDRLSGAVDKMRQVTTAVEHATE 167

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
           G+ A            +        L       +  F              ++ +   ++
Sbjct: 168 GVPAKPPSQPARRPAAAAPPAPHDTLPVL---PLREFVWTGSASLFALAGQLVVVSFLVY 224

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           F    G ++ ++             +  ++   +   I+ + L +    I  G++   A+
Sbjct: 225 FLLASGQALKRKWVRAVGRTLSEKKRAVRMMAGIGTQIQYSLLVLFASNIMLGILTAVAF 284

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFI 291
            L G+      G+  A++  +P    +     S     L  G   +A  +     +   +
Sbjct: 285 ALLGMDDATVWGLAAAVLHFVPYLGSVVMVVASGIGAYLQMGTWADALIVAGTTLVFATL 344

Query: 292 VDKTLRPFLVGGPIKLPFLPTFF 314
           V   L  +L     KL     + 
Sbjct: 345 VGTLLMTWLQSRASKLDPCVVYI 367


>gi|330982824|gb|EGH80927.1| hypothetical protein PSYAP_30563 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 277

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 88/259 (33%), Gaps = 5/259 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M + +       + +++  +  L     P L AL++ +   P+      +   S T   V
Sbjct: 1   MTDMRRWFWIGGLALLVAFVVLLHPILTPFLVALLLAYMGDPLVDRLE-RAGLSRTLSVV 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +       + +  LL L      ++  L                       G+       
Sbjct: 60  VVFGLFTLVLMALLLILVPMLAKQLFRLYELAPQILDWLQHAALPWVQAKFGLADGFWKF 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +    S           + +  +   A+   +  + +  +++ + +  F+  RD   +
Sbjct: 120 DKIKAAISE----HMGQAGDIVSIVLSQATASSLALIGWLTNLVLIPVVCFYLLRDWDIM 175

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           + ++  L      A   K++    +V+ +   G  ++ +G G++  +   L G+   + +
Sbjct: 176 TGKIRGLLPRQREAQIVKLAGECHEVLGAFIRGQLLVMVGLGVIYAAGLMLVGLELGLLI 235

Query: 245 GVITAIMAMIPGGAPISFT 263
           GVI  + A++P    +   
Sbjct: 236 GVIAGLAAIVPYMGFVIGI 254


>gi|229065088|ref|ZP_04200382.1| hypothetical protein bcere0026_51420 [Bacillus cereus AH603]
 gi|228716189|gb|EEL67906.1| hypothetical protein bcere0026_51420 [Bacillus cereus AH603]
          Length = 344

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/358 (11%), Positives = 111/358 (31%), Gaps = 23/358 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ ++ + LY ++     +L   ++ +           K       +
Sbjct: 4   KNLFQSKGFQRLIVLVLLALILYGMQSMLNLILITFMLTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +  +  V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIALLYVMLVAGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSVILSLFFLLEKARIVAFTSKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IAI   ++   A W+ G 
Sbjct: 178 SRLAIFYNEI------------EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++ EK
Sbjct: 286 PKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKDVEK 343


>gi|145631089|ref|ZP_01786864.1| hypothetical protein CGSHi22421_05505 [Haemophilus influenzae
           R3021]
 gi|144983374|gb|EDJ90856.1| hypothetical protein CGSHi22421_05505 [Haemophilus influenzae
           R3021]
          Length = 287

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 83/270 (30%), Gaps = 9/270 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEMPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  +  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAIFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + Q +             K+ + + + I +   G  +  +   L+    + + G+   +
Sbjct: 183 ELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIVTLITYIIFLIFGLNYPL 241

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
            L     +  ++P  A +    +  +LL  
Sbjct: 242 LLAFAVGLSVLVPILAQLLSRFLLHWLLYS 271


>gi|226321165|ref|ZP_03796706.1| membrane protein [Borrelia burgdorferi 29805]
 gi|226233457|gb|EEH32197.1| membrane protein [Borrelia burgdorferi 29805]
          Length = 349

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 104/324 (32%), Gaps = 27/324 (8%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +I+ I + +    +  F P+  ++++GF  +P+Y+     K         +    +  L
Sbjct: 10  IVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPK-----FLIVFIIFFL 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
                  +F +    +  L+ ++         + + +                       
Sbjct: 65  LFSFSYLIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY------------------- 105

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           K+ S      N   +I  F +R     + +  S++ + + L+F   +      +LD   +
Sbjct: 106 KVDSSVINDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFK 165

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 +      +   I        +++   G+++     L G    +   V++ +   
Sbjct: 166 KPISTRFIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNF 225

Query: 254 IPGGAPISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           IP    I       ++  +    N+     +F++      ++   L P + G  + +   
Sbjct: 226 IPSIGSILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPF 285

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVL 334
                L       G++GL I    
Sbjct: 286 LLLCFLFFWGWLWGIVGLLISYPF 309


>gi|315291913|gb|EFU51265.1| putative AI-2 transport protein TqsA [Escherichia coli MS 153-1]
          Length = 276

 Score = 78.5 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 79/275 (28%), Gaps = 17/275 (6%)

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           M + ++ ++ L  Y    + EL   +       +   + +  +   +       +   + 
Sbjct: 1   MTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAHYI 60

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                ++        +           +  L   L +  +                    
Sbjct: 61  DPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA----------- 109

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                 P       +     +    +  T I+I  GLV  +      V      G++   
Sbjct: 110 -----RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFA 164

Query: 251 MAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP     ++       +L+    + A  +     +   +    L P ++G  + L  
Sbjct: 165 LNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLST 224

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           L  F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 225 LVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 259


>gi|260433111|ref|ZP_05787082.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260416939|gb|EEX10198.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 333

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 110/347 (31%), Gaps = 29/347 (8%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++  +    ++ +LY  +   AP+  AL++G    P+               + +  V
Sbjct: 12  RAMVAILTGLALIAALYLARAIVAPITLALVLGVVVAPLADKLERAGCPRVVSASALLFV 71

Query: 69  SVMCLFIVPLLF--LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +   +    LL   L    + ++  +  ++           R +  +             
Sbjct: 72  TSTVIVTAFLLLEPLISALVEQLPAIKRELRAWVAAMSEFIRGIETL------------- 118

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                     +         +           +  ++   I+ +I  LFFF      +  
Sbjct: 119 ----GREIEETVGADGAAETESALPSVMDALWLAPNFGSKILILIGTLFFFVLTRPDLYA 174

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
               L         ++      + +   F  +T++ +G G V  +A  L G+   V  G+
Sbjct: 175 AAGPL---------QERLYQADRAVYRYFAAVTLVNVGLGAVTATALGLIGINDAVIWGL 225

Query: 247 ITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
              ++  +    P+      +   L +     A    L          + + P  VG  +
Sbjct: 226 AAGLLNFVLYLGPLMILTGLLIAGLTQFGGAAALLPPLVFLAINLSEAQFVTPAFVGQRL 285

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           ++  L  F  ++ G+   G +G  +   ++    V+    +M+  EN
Sbjct: 286 QMNPLVVFIAIIFGLWLWGPVGAIVALPILLWFGVLMNPEVMSPIEN 332


>gi|227820933|ref|YP_002824903.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
 gi|227339932|gb|ACP24150.1| putative transmembrane protein [Sinorhizobium fredii NGR234]
          Length = 374

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/341 (9%), Positives = 95/341 (27%), Gaps = 17/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +      +Y +     P+  A+++G                      ++A   V+ L 
Sbjct: 46  LFVVACSAVVYAMAAILMPIAFAIVVGIVLGRAADELARFGLPPMLGGLLLALFFVLGLS 105

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +    L              +    +    +   + +          W +         
Sbjct: 106 SLVNTLLGP------------ITELAREAPKLAESVVERVLPFIERFEWGRIALARSVGA 153

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  N    +   A+      +   + +  +++ L    +   +I   + +    
Sbjct: 154 DAFADVVVKNAGPILGAAAASVTPALIQTLIFLAALVLFLLGRVQLRSTI---ILAFPSR 210

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I   +   +   F   ++I +  G        + G+P     G+   + + I
Sbjct: 211 DGRLSAIRIMNAIEDGLTRYFSTASLIYLALGGFTMMIALVGGLPMPPLWGLFAFVSSFI 270

Query: 255 PGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P       T   +   L+    +  A        +    ++  + P ++G   ++     
Sbjct: 271 PYLGVTFMTLSLLVGGLMTHEALVVALAPATAFFLIHLAMENLVVPAILGRRFEVNPFLI 330

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F  ++      G +G  +   L  +   I+++      E +
Sbjct: 331 FVAILFWTWMWGAVGAILAMPLSLIAMTIFEQLREPPPEPQ 371


>gi|288931196|ref|YP_003435256.1| hypothetical protein Ferp_0813 [Ferroglobus placidus DSM 10642]
 gi|288893444|gb|ADC64981.1| protein of unknown function UPF0118 [Ferroglobus placidus DSM
           10642]
          Length = 330

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 107/336 (31%), Gaps = 17/336 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I+   I+ + +  +  +      +   + + + S PI   F  K        A IAT+ +
Sbjct: 8   IVIVSILSVFITVILLISPLLDGIAMGVALAYASKPIMRKFERKLPL--VLSAFIATLII 65

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +        +  + G+ ++  + S      +      R                      
Sbjct: 66  VLPLFFIFFYGLFQGLYQLLLIFSDFQNFFEKIFTTLREFG--------------VSEDY 111

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                     L +                F+ + L+     I  F+   DG    ++L S
Sbjct: 112 IQKLREYVPTLYSFVSQKFSVSVVSLTAKFIMFLLNFFLSSIVCFYALLDGDRFVRKLLS 171

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      +    V  +    + G  + AI    +    +    +P    L  +  +
Sbjct: 172 ALPEENRKIASEFFEEVDSIFTGLWFGNLVFAIIIAFISLPFFIAFNIPYTPLLVGLMFL 231

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLPF 309
            A+IP  A     A     L   ++++A    + G + L+I+ +  +RP  VG   K+  
Sbjct: 232 AAIIPIFAEWMVIAPVAIYLFTVDVYSAIYFTVIGVVFLYIIPELFIRPQFVGYASKIHP 291

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           L      +GG    G+ G FI P+L  +   I+   
Sbjct: 292 LVLLLSFIGGGLFGGIAGFFIAPMLAGIATAIYNHF 327


>gi|312794387|ref|YP_004027310.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312181527|gb|ADQ41697.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 370

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 106/343 (30%), Gaps = 13/343 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           I   +I   I    Y +K F          F PV+  L I   S P+      + + S T
Sbjct: 14  IYVILISAFIFSCAYLIKTFDLFVRFVIKAFIPVIIGLFIAEVSEPLLKYLEKR-KVSRT 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + +  +    L    Y  + E   LV+ +   +   I               S
Sbjct: 73  ISAILILIVLNIILGFMLAEGIYILVNECMSLVASLQNIDYDKIYQALDKLFASVKNIYS 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    ++  QS        L       +     +     L       F +++ FFF RD
Sbjct: 133 GLPGPIVNFIQSGVDELTNVLNQIATMSL--KVIKVIPATLKGITVWFFSVLSSFFFMRD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L              I+  V   +        I+A+   L       +   P 
Sbjct: 191 RHRMRAWLIQNFSAHLYRELSSIAFKVIDSVVDYAKSQIILAVLMFLSGLIGLSIIKAPY 250

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  ++++IP           I         N     L   + +  + +     +
Sbjct: 251 FLVISLLLGLLSIIPIIGSGIILLPWIVGSFITGDTNFGLKLLIVYLIILGIREFASIKI 310

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 311 VASQVGISTFTTLVSIYAGVEIFGAWGFVIGPLLVVFLKAVYE 353


>gi|229087925|ref|ZP_04220036.1| hypothetical protein bcere0022_44800 [Bacillus cereus Rock3-44]
 gi|228695393|gb|EEL48267.1| hypothetical protein bcere0022_44800 [Bacillus cereus Rock3-44]
          Length = 342

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 102/320 (31%), Gaps = 23/320 (7%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           K  F  +L   ++ +           K       +   +     V ++    + L     
Sbjct: 29  KSMFNLILITFMLTYLMDRFQKFISRKFNHFMPINRKIIIAFLYVMLVGGISITLFKYLP 88

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
              +++ +L+ +  +  ++                 +E+    ++    +++        
Sbjct: 89  VLTVQISQLIYQFNVFLKNPPD--------------NEIIKASINAINHMELSKYVGQGV 134

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           + +        +FG+ FL   +  +F ++             +   ++         +  
Sbjct: 135 DILYKSIANVGKFGLQFLLSLILSLFFLLEKARIVAFTSKFKESRLAIFYTEI----EYF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +   +          +IAI   ++   A W+ G P  + L ++  ++ +IP    I   
Sbjct: 191 GKKFARSFGKVIEAQFLIAIVNCVLSVIALWVLGFPQLLGLALMIFLLGLIPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             + +     G+I     + +  A+   +    L P  +     LP   TF  L+     
Sbjct: 251 VPLCMIAYNIGSITYVVYILIIVAVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHF 310

Query: 323 MGLLGLFIGPVLMALIAVIW 342
           +G+ GL IG  +   +  + 
Sbjct: 311 LGVWGLIIGIPVFMFLLDVL 330


>gi|228990972|ref|ZP_04150935.1| UPF0118 membrane protein [Bacillus pseudomycoides DSM 12442]
 gi|228997059|ref|ZP_04156690.1| UPF0118 membrane protein [Bacillus mycoides Rock3-17]
 gi|229004715|ref|ZP_04162451.1| UPF0118 membrane protein [Bacillus mycoides Rock1-4]
 gi|228756508|gb|EEM05817.1| UPF0118 membrane protein [Bacillus mycoides Rock1-4]
 gi|228762684|gb|EEM11600.1| UPF0118 membrane protein [Bacillus mycoides Rock3-17]
 gi|228768752|gb|EEM17352.1| UPF0118 membrane protein [Bacillus pseudomycoides DSM 12442]
          Length = 344

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/348 (16%), Positives = 113/348 (32%), Gaps = 23/348 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           +     +G  R +I+ I+ + LY LK     +L   I+ F           K       +
Sbjct: 5   KNFFQSRGFQRLLILVILALILYGLKSMINLILITFILTFLMDRFQRFISEKLNRFVRIN 64

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +     + ++   +  L        +++ +L+ +  L  ++                
Sbjct: 65  RKVIIAFLYIVLVTFIVATLYKYLPVLTIQISQLIYQFKLFFKNPPD------------- 111

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                        ++  +  +     G+D I +  +  G I L   LS+I  +  L    
Sbjct: 112 ----NEMIRYVFSAINQMEVSKYIEQGVDVIYQSLANIGKISLQILLSLILSLFFLLEKE 167

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           R     S+  DS     +        +   +          +IA+   ++   A    G 
Sbjct: 168 RIIVFTSKFEDSKLSIFYEEI-AYFGQKFARSFGKVIEAQFLIAVVNCILSVIALVFLGF 226

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L V+  ++ +IP    I     + I     G I     + ++ A+   I    L 
Sbjct: 227 PQLLVLAVMIFLLGLIPVAGVIISLFPLCIIAYNIGGIAYVVYILIFIAVIHAIESYFLN 286

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           P  +     LP   TF  L+     +G+ GL IG  +   +  + +  
Sbjct: 287 PKFMSAKTNLPIFYTFMVLIFSEHFLGIWGLIIGIPIFIFLLDVLEVY 334


>gi|149194444|ref|ZP_01871541.1| predicted permease [Caminibacter mediatlanticus TB-2]
 gi|149135619|gb|EDM24098.1| predicted permease [Caminibacter mediatlanticus TB-2]
          Length = 313

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 111/334 (33%), Gaps = 35/334 (10%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++    +FII+  L FL      ++ ++ + F   PI+  F +K        ++I+    
Sbjct: 1   MLYLASIFIIIFGLKFLSPILIYLILSIFLSFLLIPIFKFFENK-----GLPSIISYTLT 55

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +  F++  L +       + E +    +       +     D    +  +      +   
Sbjct: 56  ISSFLLIFLIISILIKTSLDEFIKNYPIYESKLHNLIIQYKDSLEKINFNFQDINIIP-- 113

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                          I      A      F+   + + F++     F++    +S     
Sbjct: 114 --------------FIQKFLGKAGSIVSGFIIVVIGVSFLLFESNIFHQKINLLSN---- 155

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                      KI     K ++  F+     ++  G+ +G   +   +     LG +  I
Sbjct: 156 ---------NPKIFIEFYKSVQKYFVIKFFTSLLTGICVGIMVYSFKIDYAFLLGFLAFI 206

Query: 251 MAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  IP    I      I+L LI   I +A  + ++  I    +   L P ++G  + L  
Sbjct: 207 LNFIPVVGSIIAAIPGIFLALINYGIESAIYVSIFYVIINISISNILEPKIMGNGLNLSP 266

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              FF L+      G++G F    L   + +  +
Sbjct: 267 AVIFFSLIFWGYIFGIVGTFFAVPLTLSLKLALQ 300


>gi|312904108|ref|ZP_07763276.1| hypothetical protein HMPREF9512_01862 [Enterococcus faecalis
           TX0635]
 gi|310632584|gb|EFQ15867.1| hypothetical protein HMPREF9512_01862 [Enterococcus faecalis
           TX0635]
          Length = 290

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 95/304 (31%), Gaps = 17/304 (5%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
            +  +  + ++    V+ L  + +       + +  ++++ VV   Q             
Sbjct: 1   MKIPTIVIVLLTYALVVFLIYLAITKYVPVLVNQTTQMINSVVDFYQS------------ 48

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                ++         Q L+  +      NG   I R+    G + L + +S I     +
Sbjct: 49  ---PHTDTNQVLQFIDQYLEKSNLLSQLQNGASMILRYIQDIGAVGLSFVMSFILSFFFM 105

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               +        L S  +  F   +   +                IA+   ++   A  
Sbjct: 106 IEKKQMADFSKLFLKSDFDWFFQDIY-YFANKFVNTFGVVMEAQFFIAVVNTVITTLALA 164

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           + G     +L ++  I++++P    I     +S     +G + +   +     I      
Sbjct: 165 IIGFTQLPSLAIMIFILSLVPVAGVIISCIPLSFIAYSQGGLNDVIYILALITIVHLFES 224

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             L P  +    +LP   TF  L+   R  G+ GL +G  +      + K   +   +  
Sbjct: 225 YVLNPKFMSSKTELPIFYTFVILLVSERLFGVWGLIVGIPVFTFFLDVLKVKPIRGLKRL 284

Query: 354 EKIS 357
             + 
Sbjct: 285 PNVK 288


>gi|256849664|ref|ZP_05555096.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
 gi|256713780|gb|EEU28769.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
          Length = 344

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 102/342 (29%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R++++ +I+  LY ++     VL   I  +    +         +  +  
Sbjct: 6   QKFKNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +  + ++ L    +       + ++ ++V  V+   +                  +E
Sbjct: 66  IVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYES-----------------NE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +              F     + FG + +   +S+I          R  
Sbjct: 109 SSRLASHVTRYISKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMI 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 + S          +   +               IAI    +         +P  
Sbjct: 169 EFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I++++P    I        +    G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|18311630|ref|NP_563564.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           str. 13]
 gi|169343458|ref|ZP_02864458.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           C str. JGS1495]
 gi|18146314|dbj|BAB82354.1| conserved hypothetical protein [Clostridium perfringens str. 13]
 gi|169298410|gb|EDS80499.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           C str. JGS1495]
          Length = 354

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 102/329 (31%), Gaps = 6/329 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + +  + +++  +I  + +    +  P L A I            I K + +    + 
Sbjct: 6   IKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNVGLASF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----HGIPVPRWLSDIPGGMWAS 120
           I+T     + I+           E   L + +                 L +     +  
Sbjct: 66  ISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIEVNFID 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 + +         T L  +    + +             + +IF +++ +F  ++
Sbjct: 126 NAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTYFLSKE 185

Query: 181 GFSISQQ--LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +I+    L +     +      I   + K+  +       +     ++    +    +
Sbjct: 186 LNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGFSFLNI 245

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L VI A++ ++P           I++        +        I +F++ + L P
Sbjct: 246 KYALLLSVIAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILYIFIFLLRQFLEP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   + +  L     +  G+   GLLG
Sbjct: 306 KLMASTLGIHPLLILICIFIGLELNGLLG 334


>gi|301326480|ref|ZP_07219829.1| putative AI-2 transport protein TqsA [Escherichia coli MS 78-1]
 gi|300846834|gb|EFK74594.1| putative AI-2 transport protein TqsA [Escherichia coli MS 78-1]
          Length = 301

 Score = 78.1 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/311 (12%), Positives = 90/311 (28%), Gaps = 22/311 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +        V+A  
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPR-----VLAVS 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + ++ ++ L  Y    + EL   +       +   + L  +   +       +   
Sbjct: 67  ILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAH 126

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +      ++        +           +  L   L +  +                  
Sbjct: 127 YIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMA--------- 177

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                   P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 178 -------RPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  IP     ++       +L+    + A  +     +   +    L P ++G  + L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGL 290

Query: 308 PFLPTFFGLVG 318
             L  F  L+ 
Sbjct: 291 STLVVFLSLIF 301


>gi|297379768|gb|ADI34655.1| membrane protein [Helicobacter pylori v225d]
          Length = 349

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 59/356 (16%), Positives = 127/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +      +        + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFFN--IVSSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL  I      +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLKGI-----ITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +    E F   +   ++ + +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGVSKFLENFNAASITGYLLKISSYVGKYSLKLITDALFILGLLFFFFYYGEKFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +         KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLPLGI-NQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  G++  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGHVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|126699991|ref|YP_001088888.1| hypothetical protein CD2376 [Clostridium difficile 630]
 gi|254975961|ref|ZP_05272433.1| hypothetical protein CdifQC_11639 [Clostridium difficile QCD-66c26]
 gi|255093348|ref|ZP_05322826.1| hypothetical protein CdifC_11919 [Clostridium difficile CIP 107932]
 gi|255101527|ref|ZP_05330504.1| hypothetical protein CdifQCD-6_12009 [Clostridium difficile
           QCD-63q42]
 gi|255307401|ref|ZP_05351572.1| hypothetical protein CdifA_12472 [Clostridium difficile ATCC 43255]
 gi|255315094|ref|ZP_05356677.1| hypothetical protein CdifQCD-7_12117 [Clostridium difficile
           QCD-76w55]
 gi|255517764|ref|ZP_05385440.1| hypothetical protein CdifQCD-_11681 [Clostridium difficile
           QCD-97b34]
 gi|255650877|ref|ZP_05397779.1| hypothetical protein CdifQCD_11871 [Clostridium difficile
           QCD-37x79]
 gi|260683952|ref|YP_003215237.1| hypothetical protein CD196_2217 [Clostridium difficile CD196]
 gi|260687612|ref|YP_003218746.1| hypothetical protein CDR20291_2263 [Clostridium difficile R20291]
 gi|306520769|ref|ZP_07407116.1| hypothetical protein CdifQ_13746 [Clostridium difficile QCD-32g58]
 gi|115251428|emb|CAJ69261.1| putative membrane protein [Clostridium difficile]
 gi|260210115|emb|CBA64249.1| putative membrane protein [Clostridium difficile CD196]
 gi|260213629|emb|CBE05447.1| putative membrane protein [Clostridium difficile R20291]
          Length = 340

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 103/320 (32%), Gaps = 13/320 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L         VL   I+ F  + +  +   + ++ S+     + + ++   +  +L +  
Sbjct: 26  LITFWYMLNMVLLTFIMTFIFYNLLVATRKRIKKFSSLNIPDSLIIIVLYALFAILLVLI 85

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                     + V +       + R  SD     +A  L  K       L          
Sbjct: 86  S--------YAVVPIIIVQLTELSRVFSDFDVNQFAQSLGPKLYPIVSKLDFNKYISQAG 137

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I         FG+  L   L  + +++        G  +S    S   +    + K  
Sbjct: 138 LLIASTATKVGSFGVNILLAFLLSLLLLLEKNEIKNFGDKLSDSKISFIYNSLVFFGKSF 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +   +V++       +IA    +V        G P   ALG +  ++ +IP    I   
Sbjct: 198 VKNFGEVMK----VQVMIAFINSVVSMIFLGFMGFPQIWALGFMIFVLGLIPVAGVIVSL 253

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +++     G I     + L   I   +    L P L+    KLP    F  L+ G   
Sbjct: 254 IPLTVIAFNTGGITKVFGVLLMICIVHAVETYILNPKLMSNRTKLPVCFVFIILLVGEHY 313

Query: 323 MGLLGLFIGPVLMALIAVIW 342
           +G+ GL IG  +   +  I 
Sbjct: 314 LGVWGLLIGVPIFMFLMDIL 333


>gi|312623252|ref|YP_004024865.1| sporulation integral membrane protein ytvi [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203719|gb|ADQ47046.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 370

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 55/343 (16%), Positives = 104/343 (30%), Gaps = 13/343 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           I   +I   I    Y +K F          F PV+  L I     P+      K + + T
Sbjct: 14  IYVIIISAFIFSCAYLIKTFDLFVRFIIKAFIPVIIGLFIAVVFEPLLKYME-KNKVNRT 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  + +  +         Y  + E   LV+ +   +   I               S
Sbjct: 73  ISAILILIVLNIILGFMFAEGIYILVNECMRLVASLQNIDYDKIYQALDKLFSNVKNIYS 132

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    ++  QS        L       +     +     L       F +++ FFF RD
Sbjct: 133 GLPGPIVNFIQSGVDELTNVLNQIATMSL--KVIKVIPATLKGVTVWFFSVLSAFFFMRD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L              I+  V   +        I+AI   L       +   P 
Sbjct: 191 RHKMRSWLIQNFSVQIYKELSSIAFKVIDSVVDYAKSQIILAILMFLSGLVGLSIIKAPY 250

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  ++++IP           I         N     L   + +  + +     +
Sbjct: 251 FLVVSLLLGLLSIIPIIGSGIILLPWIAGSFIAGDTNFGIKLLIVYLIILGIREFASIKI 310

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 311 VASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|14521184|ref|NP_126659.1| hypothetical protein PAB0658 [Pyrococcus abyssi GE5]
 gi|5458402|emb|CAB49890.1| Predicted permease [Pyrococcus abyssi GE5]
          Length = 329

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 131/350 (37%), Gaps = 27/350 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   + +   +++ I+ ++L  +  FF+P+  A I  +  +P++     +  E  +    
Sbjct: 1   MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSA--- 57

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                           +F   +L +  L+  ++L       V +    +      +    
Sbjct: 58  ----------------VFLTLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIP 101

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  S    +   L   G D++           L   + + F+   L         +
Sbjct: 102 FIPGDIASSLQETVDKLVEIGKDYLVSITFSVPKYLLQVVVYLTFVYFFLVKRKAIEELL 161

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           S + + L   +          +  + +   +L + I       V   A+ ++ VP+ +  
Sbjct: 162 SFRDERLVRIVKR------GNVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILA 215

Query: 245 GVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVG 302
           G++T + + +P     + + A + YL+  G+I     L ++G + +  + D T+RP LV 
Sbjct: 216 GILTVLFSFVPLFEGWMIWLAGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVA 275

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                  +    G++GG   +GL GL IGP+++ +   + +E  +  K  
Sbjct: 276 REANFDEVLVLIGMIGGTWGLGLKGLIIGPIVLNVAIEMLREWKIQNKAR 325


>gi|182680515|ref|YP_001834661.1| hypothetical protein Bind_3619 [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182636398|gb|ACB97172.1| protein of unknown function UPF0118 [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 347

 Score = 77.7 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/343 (15%), Positives = 108/343 (31%), Gaps = 19/343 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     + +F+++ +L+F    F P+  AL+I    WP+  +   +K        ++   
Sbjct: 7   RAACALLSLFLMVSALFFAAAVFGPMAFALLIMAIVWPLDQAL--RKILPRGLALIVTIF 64

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               + I     + + G      LV              RWL D    +           
Sbjct: 65  MTFTVVITFTSLITWGGGQITHWLVQNQGRLQDLYSFGARWLEDHDIFV----------- 113

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               +  ++E F     I        R   +     L  IF+ + L        ++    
Sbjct: 114 ----IGTIAERFNVVWLIRVFQGIVVRANSLAGFTLLVFIFLAMGLLEADAFRKNLQSLD 169

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                  + +        +    R   L  ++ ++  GL++    +  G+    A GV++
Sbjct: 170 VRNEGSQWGSRLVAACGAIGAKWRRYMLMRSLASLLTGLLIWGFAFAVGLELSAAWGVMS 229

Query: 249 AIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             +  IP   P+  T +     L   G++  A  + +      F++   L P   G  + 
Sbjct: 230 FALNYIPFIGPLVATILPTLFALAQTGSLETALLVLMTITAIQFLIGSYLEPLFTGKALA 289

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           +      F +       GL G  IG  +M     I      + 
Sbjct: 290 ISPFFVVFAVFFWSFLWGLPGTVIGVPIMIACLTICDSYPSSR 332


>gi|293381781|ref|ZP_06627756.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
 gi|290921651|gb|EFD98678.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
          Length = 344

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 102/342 (29%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R++++ +I+  LY ++     VL   I  +    +         +  +  
Sbjct: 6   QKFKNNIPLRRFVVLLLIIACLYEIRTMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +  + ++ L    +       + ++ ++V  V+   +                  +E
Sbjct: 66  IVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYES-----------------NE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +              F     + FG + +   +S+I          R  
Sbjct: 109 SSRLASHVTRYISKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMI 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 + S          +   +               IAI    +         +P  
Sbjct: 169 EFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I++++P    I        +    G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    ++P   TF  L+      G  GL +G  +   +  + 
Sbjct: 289 MASKTEVPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|317181882|dbj|BAJ59666.1| membrane protein [Helicobacter pylori F57]
          Length = 349

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 61/356 (17%), Positives = 125/356 (35%), Gaps = 23/356 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q     + +      +Y  + F    L A ++    + +               + +  +
Sbjct: 4   QYFFWILFLIGFYWMIYLYQDFLMDALIAGLLCVGFFQVKVFLDKCFLN--LISSFLCVL 61

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  + IVPL F+ Y     + E+        +    + +WL         +E  +   +
Sbjct: 62  ILASVLIVPLYFIVYKSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPT 110

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                    E F   +   ++ R +S  G   L      +F++  LFFF+  G    +  
Sbjct: 111 IHDGASKFLENFSAASITGYLLRISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYF 170

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +   L     KKI   V  ++R   L   I  I EG+  G      G        +  
Sbjct: 171 LGVLP-LGTNQSKKIFEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWSLGILYG 229

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------F 299
               +   G  + +  ++IY L  GN+  A  + L+  + +  ++D  ++P         
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKR 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           +    +K+  +  FF ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 290 IFKTTLKINEMLIFFSMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 345


>gi|295691896|ref|YP_003600506.1| permease [Lactobacillus crispatus ST1]
 gi|295030002|emb|CBL49481.1| Permease [Lactobacillus crispatus ST1]
          Length = 344

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 102/342 (29%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R++++ +I+  LY ++     VL   I  +    +         +  +  
Sbjct: 6   KKFKNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +  + ++ L    +       + ++ ++V  V+   +                  +E
Sbjct: 66  IVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYES-----------------NE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +              F     + FG + +   +S+I          R  
Sbjct: 109 SSRLASHVTRYISKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMI 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 + S          +   +               IAI    +         +P  
Sbjct: 169 EFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I++++P    I        +    G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|14591352|ref|NP_143430.1| hypothetical protein PH1571 [Pyrococcus horikoshii OT3]
 gi|8928494|sp|O59276|Y1571_PYRHO RecName: Full=UPF0118 membrane protein PH1571
 gi|3258000|dbj|BAA30683.1| 341aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 341

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/323 (14%), Positives = 118/323 (36%), Gaps = 28/323 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           LK   AP++  +   + ++P +     K  + ++ L +   +S+  L     + L     
Sbjct: 26  LKDLIAPIVFGMAASYIAYPFHIKLSKKVGKRNSVLILSGILSIFSLIFFVGVTL----- 80

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                +   +     +      WLS +    + S L+                 L T+  
Sbjct: 81  ----WITDTLKNLYNYLDAFFSWLSTLNVPGFLSSLF---------------DALATSFP 121

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
           + +     ++ +      L +I  +   +    +   +++++  L         +K+   
Sbjct: 122 EKLRSILLQYTLSLPKLALQLIVFLAVFYATLLNADFLAKEIYELLPLTNRELGEKMIEK 181

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH---VALGVITAIMAMIPGGAPISFT 263
           V   + +        ++ +G+ L   ++L  + +    +A GV+  ++ ++P        
Sbjct: 182 VKDTVDAILKTWLFFSVVKGIFLALGFYLFKISNVAGSIAAGVLCIVLELLPVVGGWIMW 241

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                +L++ ++  A    ++G I +  I D  L+P       K+  +    G+ GG   
Sbjct: 242 LAGAIILLRRSMLLAIIFAIYGIITISPIPDYFLKPKFAKERAKVSSVVALVGIFGGWIA 301

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G +G+ +GP+ + L+  +    
Sbjct: 302 FGAVGIILGPIAIGLLLALIDAW 324


>gi|256843777|ref|ZP_05549264.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
 gi|256613682|gb|EEU18884.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
          Length = 344

 Score = 77.7 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/342 (13%), Positives = 103/342 (30%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R++++ +I+  LY ++     VL   I  +    +         +  +  
Sbjct: 6   QKFKNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +  + ++ L    +       + ++ ++V  V+   +                  +E
Sbjct: 66  IVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYES-----------------NE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +              F     + FG + +   +S+I          R  
Sbjct: 109 SSRLASHVTRYISKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMI 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 + S          +   +               IAI    +   +     +P  
Sbjct: 169 EFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMISLAFMHMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I++++P    I        +    G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    +LP   TF  L+      G  GL +G  +   +  + 
Sbjct: 289 MASKTELPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|262047750|ref|ZP_06020702.1| permease [Lactobacillus crispatus MV-3A-US]
 gi|260571955|gb|EEX28523.1| permease [Lactobacillus crispatus MV-3A-US]
          Length = 344

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/342 (12%), Positives = 102/342 (29%), Gaps = 19/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +   N   + R++++ +I+  LY ++     VL   I  +    +         +  +  
Sbjct: 6   QKFKNNIPLRRFVVLLLIIACLYEIRAMMNTVLLTFIFTYVIVHLIHLVQRYFPKIPTGL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           +  +  + ++ L    +       + ++ ++V  V+   +                  +E
Sbjct: 66  IVAVTYLIILALLYFVVTIYLPMLVGQISKMVKSVMAFYES-----------------NE 108

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                    + +              F     + FG + +   +S+I          R  
Sbjct: 109 SSRLASHVTRYISKGEIVTQAKRVGTFALHTVTNFGSLTIATFMSLILSFFYTIELDRMI 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 + S          +   +               IAI    +         +P  
Sbjct: 169 EFSKLFVKSGYFKWLFEDIRYFGKKFTNTFGVVLEAQFFIAICNTALTMIGLAFMHMPQI 228

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           +ALG++  I++++P    I        +    G I     +F+   I   I    L P  
Sbjct: 229 IALGLMVFILSLVPVAGVIISLIPLSIIGYSVGGIRYVIYIFIMIMIIHAIEAYVLNPKF 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +    ++P   TF  L+      G  GL +G  +   +  + 
Sbjct: 289 MASKTEVPIFYTFLVLLVAEHFWGTWGLIVGVPIFTFLLDVL 330


>gi|254466848|ref|ZP_05080259.1| conserved domain protein, putative [Rhodobacterales bacterium Y4I]
 gi|206687756|gb|EDZ48238.1| conserved domain protein, putative [Rhodobacterales bacterium Y4I]
          Length = 326

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 54/326 (16%), Positives = 101/326 (30%), Gaps = 23/326 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  + + ++  ++YF K   AP + AL++G    P+                V    S+
Sbjct: 1   MLLIITLIMLGGAMYFAKPVLAPGVFALVVGVVIAPLADRLERIGVSR-----VAVASSL 55

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L    L  L       M  L S+V             +S +  G+ +     +     
Sbjct: 56  LLLTTALLALLILSLDPLMTSLASQVPKIKYEIRGWLDMVSGLLRGIESISSEIEETIGA 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                  E        D +                  +        F   G      L  
Sbjct: 116 AEADTEEEGTGLPTLTDAL-----------------WLAPNFGAQMFIFAGTLFFFVLTR 158

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
              +     +        + +   F  +TI+  G GL+  +   L G+P     G+  AI
Sbjct: 159 NELYEKAGSYAARFFRAERAVARYFAAVTIVNGGLGLLTAAGLALIGLPGAWIWGLAAAI 218

Query: 251 MAMIPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  I    P+   A +++  L +     A    L          + + P  VG  + L  
Sbjct: 219 LNFILYLGPLMMLAGLTVAGLTQIGGAGAVLPPLVFLAINIAEAQFVTPAFVGRQLDLNP 278

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLM 335
           L  F+ +V G+   G +G  +   L+
Sbjct: 279 LIVFWAIVLGLWIWGPVGAIVALPLV 304


>gi|322382013|ref|ZP_08055959.1| hypothetical protein PL1_0835 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154024|gb|EFX46356.1| hypothetical protein PL1_0835 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 352

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 95/326 (29%), Gaps = 29/326 (8%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           Y L      +L   I  F  + I S                + ++   +      V    
Sbjct: 36  YMLSDMLNILLFTFIFSFLFYTICSLLLKLTHKWVRIPEKLMILLVYGAFGVFVGVASYM 95

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                  ++  +V+ +V                              +    +  + +  
Sbjct: 96  YVPVLAKQIVSIVNIIVNF---------------------NPSDYKDAFHPKVFEMIQRV 134

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP--- 197
              + +     +A         + LSI   +I  FFF  +   I + L            
Sbjct: 135 DIGSYLSSAGNYAVNTTKNIGGFLLSIFLSLILSFFFSWERRGIVKFLQRFETSKVGFIY 194

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            Y+K+  R              +I+    ++     +  G P  + LGV+   + ++P  
Sbjct: 195 EYYKQFGRNFVNSFGKVMQVQILISFINSILSVIMLYFMGFPQILGLGVMIFALGLVPVA 254

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I     +SI     G   +   + +   I        L P L+   +KLP   TF  L
Sbjct: 255 GVIVSLIPLSIIAFQIGGWIHIVYVLVMITILHAFESYVLNPKLMSVKMKLPVFFTFAVL 314

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   R +G+ GL IG  L      + 
Sbjct: 315 ILFERLIGVWGLLIGIPLFMFFLDLV 340


>gi|187917889|ref|YP_001883452.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
 gi|119860737|gb|AAX16532.1| hypothetical membrane spanning protein [Borrelia hermsii DAH]
          Length = 359

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 101/319 (31%), Gaps = 27/319 (8%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
            +  F P+  A+++GF  +PIY+     K        V+    +  +  +    +F +  
Sbjct: 36  AQTVFKPLAIAVVLGFLVYPIYTFLKKLKIPR-----VLIVFVIFFVLFLFSYLVFSFVY 90

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
             +  L+ ++    +  I +   + +      A                           
Sbjct: 91  YSVTILIEQLPYYQKQLIFIMVDILEKYKLDSAIISNIDF-------------------S 131

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
            +I  F +R     + +  S++ + + L+F   +    + ++ +       + + +    
Sbjct: 132 KYIYPFLTRISNEIIGFASSLVVLFLLLYFLLSEIHIFAIKVKNAFRASVSSMFIEALST 191

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   I         ++   G ++     L G        V+T +   IP    I      
Sbjct: 192 INNQISKYLGIKVFVSFLTGFLVFIGLKLFGQDFPRVWAVLTFVFNFIPSIGSILAVFFI 251

Query: 267 IYLLIKG---NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           +   +     N+     +F++      ++   L P + G  + L        L       
Sbjct: 252 VIAALVQFYPNLDLVLYIFIYNTFVQMLIGNILEPKMQGHRLDLSPFLLLCFLFFWGWLW 311

Query: 324 GLLGLFIGPVLMALIAVIW 342
           G++GL I      +I VI 
Sbjct: 312 GIVGLLIAYPFTVIIKVIV 330


>gi|218231446|ref|YP_002370215.1| membrane protein YdbI [Bacillus cereus B4264]
 gi|218159403|gb|ACK59395.1| membrane protein YdbI [Bacillus cereus B4264]
          Length = 317

 Score = 77.3 bits (189), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 93/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++    + L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDHFMPINRKIIIAFLYVMLIGGIAITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKSRIVGFTAKFKESRLAIFYTEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   ++++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|299822930|ref|ZP_07054816.1| integral membrane protein [Listeria grayi DSM 20601]
 gi|299816459|gb|EFI83697.1| integral membrane protein [Listeria grayi DSM 20601]
          Length = 343

 Score = 77.3 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/344 (11%), Positives = 103/344 (29%), Gaps = 25/344 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             +  + + R ++  +++  LY ++     +L   I  +    + +  + +       + 
Sbjct: 6   RFVKQKSVTRVLVFLLLVFVLYLVRSMIDIILMTFIFSYLITRLENFILKRVSIYRPIIV 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I    ++    + L+      + ++ +L+                              
Sbjct: 66  IILYALIVVCLTLLLVKYVPIIIEQLNQLIKFGNAFFTT--------------------- 104

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
             +      +  +   F  T   D    F            ++I   ++   FF      
Sbjct: 105 KSNNQIIDYIVKMGNDFNITKYTDKGFTFLLSSLKSTGTVMMNIFIALMLSLFFSLGREH 164

Query: 184 ISQQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           +               ++++        +          +IA+   ++     W    P 
Sbjct: 165 LLVFTKQFETSKIAFIYEEMKFFGVKFVRTFGKVIEAQFLIALVNCVLTTIVLWFLHFPQ 224

Query: 241 HVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
            + L ++  ++ +IP    +     +SI     G I     + +   +   I    L P 
Sbjct: 225 LLTLSIMIFLLGLIPVAGVVLSLIPLSIVGFSIGGIKYIIYVIILIVVIHAIESYILNPK 284

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L+     LP   TF  L+ G    G+ GL +G  ++     + +
Sbjct: 285 LMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLE 328


>gi|227509087|ref|ZP_03939136.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
 gi|227191474|gb|EEI71541.1| permease [Lactobacillus brevis subsp. gravesensis ATCC 27305]
          Length = 320

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 91/314 (28%), Gaps = 16/314 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             + +L   I       + +      +  S  + VI  + V+      +         + 
Sbjct: 1   MMSTLLLTFIFCLLVVKLTNGIRRFVKIPSEVIVVIVYLLVLAGLYFGVTVYIPQVADQA 60

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
                 +V    +   +P                       + +K  +      NG+  I
Sbjct: 61  ISSTKDIVDFYSNPSNLPD--------------DNTLRWVNELIKQSNVMAQMKNGVSLI 106

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            R+ +  G + +   LS+I                   LDS     F   +    +    
Sbjct: 107 WRYITGVGTMGITLFLSMILSFFFAIEKKTMYNFSHLFLDSDFSWFFQDLYF-FGKKFVA 165

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIY 268
                      IAI   ++         +P    L ++  I+++IP    I  F  +S+ 
Sbjct: 166 TFGVVIEAQFFIAIVNTVLTTIVLAFMHLPQLAVLALMVFILSLIPVAGVIISFIPLSLV 225

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G + +   L +   +   +    L P  +     LP   TF  L+ G    G+ GL
Sbjct: 226 GYSVGGLQDVLYLIITIVVVHALEAYVLNPNFMASKTNLPIFYTFVVLLVGEHFFGVWGL 285

Query: 329 FIGPVLMALIAVIW 342
             G  +   +  I 
Sbjct: 286 ICGVPVFTFLLDIL 299


>gi|227524980|ref|ZP_03955029.1| permease [Lactobacillus hilgardii ATCC 8290]
 gi|227087791|gb|EEI23103.1| permease [Lactobacillus hilgardii ATCC 8290]
          Length = 320

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 91/314 (28%), Gaps = 16/314 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             + +L   I       + +      +  S  + VI  + V+      +         + 
Sbjct: 1   MMSTLLLTFIFCLLVVKLTNGIRRFVKIPSEVIVVIVYLLVLAGLYFGVTVYIPQVADQA 60

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
                 +V    +   +P                       + +K  +      NG+  I
Sbjct: 61  ISSTKDIVDFYSNPSNLPD--------------DNTLRWVNELIKQSNVMAQVKNGVSLI 106

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            R+ +  G + +   LS+I                   LDS     F   +    +    
Sbjct: 107 WRYITGVGTMGITLFLSMILSFFFAIEKKTMYNFSHLFLDSDFSWFFQDLYF-FGKKFVA 165

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIY 268
                      IAI   ++         +P    L ++  I+++IP    I  F  +S+ 
Sbjct: 166 TFGVVIEAQFFIAIVNTVLTTIVLAFMHLPQLAVLALMVFILSLIPVAGVIISFIPLSLV 225

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G + +   L +   +   +    L P  +     LP   TF  L+ G    G+ GL
Sbjct: 226 GYSVGGLQDVLYLIITIVVVHALEAYVLNPNFMASKTNLPIFYTFVVLLVGEHFFGVWGL 285

Query: 329 FIGPVLMALIAVIW 342
             G  +   +  I 
Sbjct: 286 ICGVPVFTFLLDIL 299


>gi|218659944|ref|ZP_03515874.1| hypothetical protein RetlI_09987 [Rhizobium etli IE4771]
          Length = 213

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 61/208 (29%), Gaps = 6/208 (2%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q      ++   +  LY       P ++ + I +   P+      +   S     ++
Sbjct: 10  LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLQ-RLGLSRMMATIV 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             ++ +  F + L+ L      +  +   ++               +     W       
Sbjct: 69  ILIAFVITFTLALMILIPVLASQFNDFAERMPGYISQLQQFIDNSKNSLLPEWVRSQAGT 128

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
              +   +      FL       +       G   +D    ++   +  F+   D   + 
Sbjct: 129 IKDNFSGILSEGMGFLTG-----LFAQIWNSGKAIVDVISLLVVTPVVAFYILLDWDRMV 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRS 213
            ++D      + A  ++I++ + +  R 
Sbjct: 184 AKVDQWIPRDYVADVRQIAKEIDQGDRR 211


>gi|15790438|ref|NP_280262.1| HtlA [Halobacterium sp. NRC-1]
 gi|169236174|ref|YP_001689374.1| hypothetical protein OE3054R [Halobacterium salinarum R1]
 gi|10580930|gb|AAG19742.1| Htr-like protein [Halobacterium sp. NRC-1]
 gi|167727240|emb|CAP14026.1| conserved hypothetical protein [Halobacterium salinarum R1]
          Length = 382

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/365 (13%), Positives = 111/365 (30%), Gaps = 33/365 (9%)

Query: 1   MRETMLNPQGIMRWMIMF-IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M +T ++      W I   +    +Y +  F    +    + + + P+Y         SS
Sbjct: 1   MGDTRIDRGRAAWWAIGATLTAALVYVVYTFVGTFVLGFFLYYATRPVYRRVDRHLRSSS 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               V                L     + +    +  V   +    +     D+      
Sbjct: 61  VAAVV--------------SLLVLALPVVVLLSYTTAVGIQELTRVLNAPQIDLTTVEAL 106

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            + +       Q  + L         I+   R A ++        + +  +I   F+  R
Sbjct: 107 VQPYVDVSRAVQDPQSLLGQPSVRAAINTTLRSAGQYAGFLGTAFVHLFAVITIAFYLLR 166

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL---- 235
           D   +++   S          +  +  +     + F G  + A   G++    + +    
Sbjct: 167 DDTRLAEWFHSRFADSDG-VVRAYTAAIDADFSNIFFGNILFAFITGVIASITFNVLQIV 225

Query: 236 ----AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-------GNIFNATCLFLW 284
                 +P    +G++T   ++IP           +  L         G  F A    + 
Sbjct: 226 FPSSLSIPYPTLMGLLTGAASLIPVVGIKLVWIPLLGWLAVAAARSGGGYGFVAVFGVVA 285

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             +  FI D  +RP++ G    L         V G    G  G+F+GP+++  +    + 
Sbjct: 286 AVVIDFIPDLVVRPYVSGR--DLHLGLVMLAYVFGPLIWGWYGIFLGPMVLVFVVHFARL 343

Query: 345 SIMAI 349
            +  +
Sbjct: 344 VLPEL 348


>gi|302873320|ref|YP_003841953.1| hypothetical protein Clocel_0411 [Clostridium cellulovorans 743B]
 gi|307688512|ref|ZP_07630958.1| hypothetical protein Ccel74_10158 [Clostridium cellulovorans 743B]
 gi|302576177|gb|ADL50189.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 337

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 103/325 (31%), Gaps = 15/325 (4%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           Y LK     +L   I  F    I+    +K        + + T+SV  + +  ++ +   
Sbjct: 27  YMLKSMINLLLLTFIFTFIFSQIHKFVYTKVNSWIKLSSKMVTISVYVIILAIIVIMS-- 84

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
                   +  +    Q  I +   LS         ++     +  + ++I        +
Sbjct: 85  --------IRYIPQVTQQLIDIINLLSTFNLEQVHDKVGDTIFNIIKEIQIQDYLKQSED 136

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +      F M  +   L   F I+        G  +     +        Y K   
Sbjct: 137 KIIELATQIGTFSMNVVIAFLLSFFFILEKEEIIAFGQRLEGSKLAFAY----EYCKYCG 192

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-T 263
            I             +IA    ++   A  + G P  + +G +  I+ +IP    I    
Sbjct: 193 GIFLNSFGKVIQLQIVIAFINSVLSVIALAIMGFPQALGIGTMIFILGLIPVAGVIVSLV 252

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
            +SI     G +     + +  A+   +    L P L+    KLP    F  L+ G   M
Sbjct: 253 PLSIIAFNIGGMVKIIEVIIMIAVLHALESYVLNPKLMSMKTKLPVFMVFVILLVGEHLM 312

Query: 324 GLLGLFIGPVLMALIAVIWKESIMA 348
           G+ GL +G  L      I+   +  
Sbjct: 313 GVWGLLLGIPLFIFFLDIFDIKVEG 337


>gi|227511994|ref|ZP_03942043.1| permease [Lactobacillus buchneri ATCC 11577]
 gi|227084802|gb|EEI20114.1| permease [Lactobacillus buchneri ATCC 11577]
          Length = 320

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 91/314 (28%), Gaps = 16/314 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             + +L   I       + +      +  S  + VI  + V+      +         + 
Sbjct: 1   MMSTLLLTFIFCLLVVKLTNGIRRFVKIPSEVIVVIVYLLVLAGLYFGVTVYIPQAADQA 60

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
                 +V    +   +P                       + +K  +      NG+  I
Sbjct: 61  ISSTKDIVDFYSNPSNLPD--------------DNTLRWVNELIKQSNVMAQMKNGVSLI 106

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            R+ +  G + +   LS+I                   LDS     F   +    +    
Sbjct: 107 WRYITGVGTMGITLFLSMILSFFFAIEKKTMYNFSHLFLDSDFSWFFQDLYF-FGKKFVA 165

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIY 268
                      IAI   ++         +P    L ++  I+++IP    I  F  +S+ 
Sbjct: 166 TFGVVIEAQFFIAIVNTVLTTIVLAFMHLPQLAVLALMVFILSLIPVAGVIISFIPLSLV 225

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G + +   L +   +   +    L P  +     LP   TF  L+ G    G+ GL
Sbjct: 226 GYSVGGLQDVLYLIITIVVVHALEAYVLNPNFMASKTNLPIFYTFVVLLVGEHFFGVWGL 285

Query: 329 FIGPVLMALIAVIW 342
             G  +   +  I 
Sbjct: 286 ICGVPVFTFLLDIL 299


>gi|55376336|ref|YP_134189.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55229061|gb|AAV44483.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 388

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 128/386 (33%), Gaps = 33/386 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK------- 54
           R T    + +     + +++   + L  F A ++  + + + S PIY    S        
Sbjct: 3   RSTRFQQRSLFAIGGLGLLIGVAFVLVQFRATLIFTVFLYYASRPIYRKLESVSTPSYFS 62

Query: 55  ---KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLS 111
                     LAV      +  F++   +     +  +++ + +  LA+ +   +    S
Sbjct: 63  EYSLPYRRQILAVTTISVFLLPFLLLFTYTLALVVPAVQQFIGQNDLASGYLSAIQSADS 122

Query: 112 D-IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +P  +   ++       P+ +  +         I+           +F D  +    +
Sbjct: 123 GGLPEPIAGLQISDLLDMSPEEIVTILNAPSVRTWIEQTLGTLISSIGVFADVGIQAFLL 182

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV-- 228
           +   ++   DG  +S+ L    +       +  +  V   + S   G  + A+  G++  
Sbjct: 183 LSGTYYLLTDGPRLSRWLFDHFDES--GVVESYAIAVDDELSSILFGNILNALVTGIIGI 240

Query: 229 ------LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA---- 278
                    +     VP    +G +T   ++IP             +L  G + +     
Sbjct: 241 VVFSAYNSISPAAVQVPFAPLVGALTGAGSLIPVVGMKIVYFPVGAILTVGAVASGQATA 300

Query: 279 -----TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
                  L L   +   I D  +RP++ G           F  + G    G  G+F+GP+
Sbjct: 301 IGYVLLFLILAFVVVDTIPDFLIRPYVSGNRT--HVGLLMFAYILGPIVFGAYGIFLGPI 358

Query: 334 LMALIAVIWKESIMAIKENKEKISSN 359
           L+ L+A  ++  +       E    +
Sbjct: 359 LLVLVAQFFRT-VAPYVATGEPPDQS 383


>gi|291276358|ref|YP_003516130.1| acid membrane antigen A [Helicobacter mustelae 12198]
 gi|290963552|emb|CBG39384.1| acid membrane antigen A [Helicobacter mustelae 12198]
          Length = 345

 Score = 76.9 bits (188), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 64/355 (18%), Positives = 131/355 (36%), Gaps = 23/355 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
            +   I+  +   I L +LY  + F    L A +I   ++ +     +    S+    + 
Sbjct: 3   NSKSLILIILFACITLSTLYLYRFFLVDALIAGLICIATFGLKERLYNILR-SNLLATLS 61

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +M  F++PL+FL    ++    L ++ +L                      E+ + 
Sbjct: 62  IEIFLMLFFVLPLVFLIQQSIMFFSALKAQDILYYFQSSR-----------EGIKEILSN 110

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  ++ L +        +     +S  G   L + + + F+++ LF F+  G SI 
Sbjct: 111 FPMITAHIQTLLQNLSAQKIAELSLSVSSYIGSESLHFFMDLGFILLFLFLFFYHGRSIY 170

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +              I   V  V++   L   +  I +GL  G           + LG
Sbjct: 171 LGILRALPLNI-KQGHHIFEEVSSVLKIVLLTSLVNMILQGLAFGIFLSFFHYKHALILG 229

Query: 246 VITAIMAMIPG-GAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRP----- 298
           +   I +++P  G  + +  V+ + +  G+  +A  +         F++D  ++P     
Sbjct: 230 ICYGIASLVPVVGGALVWIPVAGFEIFLGHFQHAIIISLYALIFIAFVIDNVIKPIIITF 289

Query: 299 ---FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
               L+  P+K+  L  FF +  G  T G  G+ +GP + A    +W+      K
Sbjct: 290 FNHKLLSKPLKINELIIFFAIFAGFSTFGFWGILLGPAITAFFIALWRLYQRRFK 344


>gi|254416119|ref|ZP_05029874.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
 gi|196177052|gb|EDX72061.1| conserved domain protein, putative [Microcoleus chthonoplastes PCC
           7420]
          Length = 336

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 93/273 (34%), Gaps = 15/273 (5%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + + +  + + ++L++++       I +   +                    ++  +   
Sbjct: 79  VTIGFALLSQGQQLINELPGIIDQVIFIVEKIERFLDRWNLQIDLEAIGEFLRNQILAG- 137

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                                 L   +++I + +  FF   D   +   +          
Sbjct: 138 -----------ITIVLAILSELLTQFVNLILIAVVAFFMLLDRGRLWSFILQRFPPPLRN 186

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
              K+S  + +     F G  +++   G+     + L  +P  + L  I  +  +IP   
Sbjct: 187 ---KLSLAIQRNFLGFFWGRLLLSAFFGISAFVIFVLFRIPYALVLAAIAGVFDLIPAIG 243

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                 +   +++   I  +  +         + +  L P ++ G + +  +  FF L+ 
Sbjct: 244 ATLGITIVALIVLPQGILLSITVLAICVTLQQVEENLLMPRIMQGSLDMNPVVMFFALLV 303

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
           G R  GLLG+F+   L  ++  +++ + M  K+
Sbjct: 304 GARVAGLLGVFLAIPLAGVMISLFEINEMKGKD 336


>gi|229158999|ref|ZP_04287055.1| hypothetical protein bcere0010_51700 [Bacillus cereus ATCC 4342]
 gi|228624418|gb|EEK81189.1| hypothetical protein bcere0010_51700 [Bacillus cereus ATCC 4342]
          Length = 314

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 93/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++    + L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLVIAFLYVMLIGGIAITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKARIVAFTSKFKESRLAIFYTEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   ++++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|224532547|ref|ZP_03673170.1| membrane protein [Borrelia burgdorferi WI91-23]
 gi|224512490|gb|EEF82868.1| membrane protein [Borrelia burgdorferi WI91-23]
          Length = 341

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 102/326 (31%), Gaps = 27/326 (8%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I       +  F  +  ++++GF  +P+Y+     K         +    +  L      
Sbjct: 8   IYWGFKIAEAVFKRLAISIVLGFLVYPVYTFLARFKVPK-----FLIVFIIFFLLFSFSY 62

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            +F +    +  L+ ++         + + +                       K+ S  
Sbjct: 63  LIFSFVYYSVTVLMKQLPYYQNQLAFIMKDVLSRY-------------------KVDSSV 103

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
               N   +I  F +R     + +  S++ + + L+F   +      +LD   +      
Sbjct: 104 INDVNFSGYIYPFLTRAYNEIIGFTSSLVVVFLLLYFLLSEIHVFEMKLDKAFKKPISTR 163

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
           +      +   I        +++   G+++     L G    +   V++ +   IP    
Sbjct: 164 FIGALDTINNQIGKYLGIKILVSCLTGILVFIGLTLFGQDFPLVWAVLSFVFNFIPSIGS 223

Query: 260 ISF---TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           I       ++  +    N+     +F++      ++   L P + G  + +        L
Sbjct: 224 ILAVFFIVITSLIQFYPNLNIVLYVFIYNTSIQMLIGNILEPKMQGKRLDISPFLLLCFL 283

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIW 342
                  G++GL I      ++ VI 
Sbjct: 284 FFWGWLWGIVGLLISYPFTVIVKVIV 309


>gi|308070317|ref|YP_003871922.1| Predicted permease [Paenibacillus polymyxa E681]
 gi|305859596|gb|ADM71384.1| Predicted permease [Paenibacillus polymyxa E681]
          Length = 384

 Score = 76.9 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/324 (11%), Positives = 94/324 (29%), Gaps = 8/324 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +    ++ + +  + F+        APV  + ++ +   P    F  K      F + 
Sbjct: 10  RTVFDIGLIVLTVYLIMFVSSKLYQLAAPVFLSFVVFWCIEPAARYFHRK-GMKKPFASA 68

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  + L +     L    + +  ++   +    Q       +   +           
Sbjct: 69  LSVLLFIILLLAIFFGLGLILVTQFTKVAQNLPQYTQIIQA--EFTRYLHLSQDKIAALP 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++   +    + T + T        F  +F   F  +  +    II  FF   +    
Sbjct: 127 PSVTERVNDYFATATTIATKWAQLGLSFFIQFLSSFTVFMGNFAIAIILAFFLSMEINLW 186

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                S         +  +   V K I +      ++     +++     +  V + ++L
Sbjct: 187 KGIARSKTPKTLKTAYLFLKNHVLKAISAFLKAQALLVGITFVLVFIGLLILQVDNALSL 246

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++ A+  ++P              L            L       IV +   P + G  
Sbjct: 247 ALVAALFDILPLLGVPVIFIPWAVYLFITGNTGLAVGLLIVMAVTVIVRQLAEPKITGNS 306

Query: 305 IKLPFLPTFFGL-VGGVRTMGLLG 327
           I +          +  +   GL G
Sbjct: 307 IGVSSAYLMLSFAIISLSIFGLAG 330


>gi|262039320|ref|ZP_06012635.1| sporulation integral membrane protein YtvI [Leptotrichia
           goodfellowii F0264]
 gi|261746650|gb|EEY34174.1| sporulation integral membrane protein YtvI [Leptotrichia
           goodfellowii F0264]
          Length = 299

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 71/221 (32%), Gaps = 5/221 (2%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +      +     + ++           F        + I   +++ FF   D   I  
Sbjct: 17  FTEQIKNSVAGFISMGSSKFGRFINGLIYFVTSIPTIIIYICITVLSTFFISLDKKEILN 76

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL-----AGVPSH 241
            L+      +      I R +  V+ S      I+       L  ++ +       V   
Sbjct: 77  FLEQQLPESWLRKVYNIKREMFTVLGSYVKAQIILMTICFFELLISFNILFFLEFNVSYP 136

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           + + ++  ++  +P     +       +             +   + +  V + L P L+
Sbjct: 137 LLISIVICLIDALPILGAGAVLLPWAGISFILGDIKLGIALILIYLLVLSVRQMLEPKLI 196

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              I +  L T   +  G +  G++G  IGPV+M ++  ++
Sbjct: 197 SQNIGVHPLVTLISMYSGFKFFGVMGFLIGPVVMIILKNVF 237


>gi|163785444|ref|ZP_02180051.1| hypothetical protein HG1285_05465 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879288|gb|EDP73185.1| hypothetical protein HG1285_05465 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 286

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 112/284 (39%), Gaps = 4/284 (1%)

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+   I+P + +    + E+ +L    +        +  ++  IP   +  E    +L 
Sbjct: 1   MVLIFIIIPSILIIAVFVNELTKLYPIFINKISKSDSIESFILSIPVISYLHEKIISYLQ 60

Query: 129 HPQS--LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                           +  ++F+        + F    L II MII +FF ++DG +   
Sbjct: 61  TLNIKVDIQDFLKTAISYVVNFLISKGRTIFIDFSFIVLGIILMIITIFFLFKDGKNFYI 120

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  L           I+      I+   LG  + AI +G++    Y+ +GV   +   +
Sbjct: 121 WIYKLIPMEEKEKN-YIAVSSYNTIQGIVLGSFLTAIAQGILSFIGYYFSGVGFSLFWAI 179

Query: 247 ITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           IT   A IP G   + +  +++YL     +       L+G   +  VD  ++P ++GG  
Sbjct: 180 ITFFSAFIPIGGASLIWVPIAVYLFFTKGLIVGILFSLYGTFIISTVDNIIKPIVIGGKA 239

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +  L   F + GG+   G +G+FI P+++ +I  +        
Sbjct: 240 NIHPLIMIFAIFGGLNLFGFVGVFIAPIIVVIIYNLLNIFQERY 283


>gi|206975848|ref|ZP_03236759.1| putative membrane protein [Bacillus cereus H3081.97]
 gi|206745942|gb|EDZ57338.1| putative membrane protein [Bacillus cereus H3081.97]
          Length = 314

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 93/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++    + L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIAITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYTEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   ++++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|229106024|ref|ZP_04236645.1| hypothetical protein bcere0019_51480 [Bacillus cereus Rock3-28]
 gi|228677419|gb|EEL31675.1| hypothetical protein bcere0019_51480 [Bacillus cereus Rock3-28]
          Length = 314

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 93/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++    + L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDNFMPINRKLIIAFLYVMLIGGIAITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYHEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   ++++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|296450206|ref|ZP_06891967.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296878587|ref|ZP_06902592.1| conserved hypothetical protein [Clostridium difficile NAP07]
 gi|296260969|gb|EFH07803.1| conserved hypothetical protein [Clostridium difficile NAP08]
 gi|296430394|gb|EFH16236.1| conserved hypothetical protein [Clostridium difficile NAP07]
          Length = 340

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 102/320 (31%), Gaps = 13/320 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L         VL   I+ F  + +  +   + ++ S      + + ++   +  +L +  
Sbjct: 26  LITFWYMLNMVLLTFIMTFIFYNLLVATRKRIKKFSYLNIPDSLIIIVLYALFAMLLVLI 85

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                     + V +       + R  SD     +A  L  K       L          
Sbjct: 86  S--------YAVVPIIIVQLTELSRVFSDFDVNQFAQSLGPKLYPIVSKLDFNKYISQAG 137

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I         FG+  L   L  + +++      + G  +S    S   +    + K  
Sbjct: 138 LLIASTATKVGSFGVNILLAFLLSLLLLLEKNEIKKFGDKLSDSKISFIYNSLVFFGKSF 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +   +V++       +IA    +V          P   ALG +  ++ +IP    I   
Sbjct: 198 VKNFGEVMK----VQVMIAFINSVVSMIFLGFMRFPQIWALGFMIFVLGLIPVAGVIVSL 253

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +++     G I     + L   I   I    L P L+    KLP    F  L+ G   
Sbjct: 254 IPLTVIAFNTGGITKVFGVLLMICIVHAIETYILNPKLMSNRTKLPVCFVFIILLVGEHY 313

Query: 323 MGLLGLFIGPVLMALIAVIW 342
           +G+ GL IG  +   +  I 
Sbjct: 314 LGVWGLLIGVPIFMFLMDIL 333


>gi|32266134|ref|NP_860166.1| hypothetical protein HH0635 [Helicobacter hepaticus ATCC 51449]
 gi|32262184|gb|AAP77232.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 355

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 56/352 (15%), Positives = 124/352 (35%), Gaps = 22/352 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                +      +  Y    +   +L AL++   ++ +++      +      A ++   
Sbjct: 5   TFFWLVFGVSAYMMYYVYAAYLMDILIALLLCIATYGLHNILSKYIKYP-VICAFVSVSV 63

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++ LFIVPL  L    +  + EL      A   G                  L++     
Sbjct: 64  LVLLFIVPLFSLMKTLITSVSELNPTAFGAFIEGSKA-----------QILALFSSFPEI 112

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              L+ +       + + ++  F+S+ G   L + +   F+++ LFF++  G    + + 
Sbjct: 113 ESRLRDVFNNISAPSILSYVFNFSSQLGKSSLGFIIDTGFIVVFLFFYFLYGKQAYEYII 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            L           +   V  VI+  F    +  + +G   G      G        +   
Sbjct: 173 ELIPFEN-IQIANVLDEVTNVIKVVFYTSLLNIVLQGFAFGILIMFFGYDGVFFGMLYGL 231

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------FL 300
              +   G  + +  ++ Y    GN  NA  + L+  I    ++D  ++P         +
Sbjct: 232 ASIVPIVGGGLVWLPLAGYEFYLGNTHNALIIALYALIVCAVLIDNIIKPILIGIINKKV 291

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +   +K+  L  FF ++ G+ + G  G+ +GP + AL   + +       + 
Sbjct: 292 LKTSVKINELLIFFAILAGLTSFGFWGIILGPAVTALFISLLRIYRKQTAKE 343


>gi|307626825|gb|ADN71129.1| putative inner membrane protein [Escherichia coli UM146]
          Length = 201

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 1/187 (0%)

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
           M++     Y  G  ++Q +      L          +  + IR+  LG+ + A+ + ++ 
Sbjct: 1   MLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGVVVTALVQAVLG 60

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
           G    ++GVP    L V+  +  ++  G         I+L   G+    T L +W  +  
Sbjct: 61  GIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVG 120

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            + D  +RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +
Sbjct: 121 TL-DNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEV 179

Query: 350 KENKEKI 356
               ++ 
Sbjct: 180 PPPTDQP 186


>gi|260663761|ref|ZP_05864648.1| permease [Lactobacillus fermentum 28-3-CHN]
 gi|260551710|gb|EEX24827.1| permease [Lactobacillus fermentum 28-3-CHN]
          Length = 346

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 95/320 (29%), Gaps = 19/320 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           Y  +     +L   I  +                  T + +++ + ++      +     
Sbjct: 28  YEARSLMNTILLTFIFTYLIVHWVRLVQRWIPRVPVTLVVLLSYLLLILGLFYVVTDYVP 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++ ++ + ++   Q                  +++        Q +   +      
Sbjct: 88  MLVNQLVKMTNSLITFYQS-----------------ADMHWLMKYLNQFVSSSTLATQAR 130

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +               IA+    +   A +   +P   ALG++  I++++P    I   
Sbjct: 191 GKKFINTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFILSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G+ GL +G  +   +  I 
Sbjct: 311 FGVWGLIVGVPIFTFLLDIV 330


>gi|268679040|ref|YP_003303471.1| hypothetical protein Sdel_0399 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617071|gb|ACZ11436.1| protein of unknown function UPF0118 [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 346

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 46/345 (13%), Positives = 111/345 (32%), Gaps = 22/345 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M   +  +  + + +++  L   + F   +  A ++   ++ I        + +    A+
Sbjct: 1   MNEHRFFLTAIFLVVLVSLLKLYQPFLMIIAIASLLAMATYTINFKLYKLTK-NRHIAAI 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++T  +  L   PL++               ++   QH +    +           +L T
Sbjct: 60  LSTSLLSLLLFGPLIYSLTSIGSIANNFDFAMIEKVQHYLKTLDY-----------QLPT 108

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                  SL     T            +    G     +   ++ +++  FF   +G  +
Sbjct: 109 PFAFMQSSLDEFINTLNIAQMSSTALSYLGSLGKNSAGFLKDMLLIVVFFFFALLNGKDL 168

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              + S+           +   V  V+      +   AI +G++        G    +  
Sbjct: 169 IDYIKSVMPLGAQEVN-MVFAEVTSVMSVVLYSILFSAIFQGMLFSFIGMYFGYDGLLLG 227

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGG 303
                   +   G  + +  +    +  GN  +A  + L+  + + I+ D  ++P ++  
Sbjct: 228 IFYGFASLIPVIGGALMWIPLCALEIAHGNTTSAIIIALYSIVIISIIADTFVKPLIIKY 287

Query: 304 PIK--------LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                      +  L  FF +  G+ T G  G+ +GP +  L   
Sbjct: 288 INDKMVKTPTMVNELLIFFAIFAGLTTFGFWGMILGPAITTLFIS 332


>gi|228918050|ref|ZP_04081579.1| hypothetical protein bthur0012_52470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228841593|gb|EEM86708.1| hypothetical protein bthur0012_52470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 314

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 94/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++   ++ L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIVITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYTEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   ++++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|255656350|ref|ZP_05401759.1| hypothetical protein CdifQCD-2_11799 [Clostridium difficile
           QCD-23m63]
          Length = 340

 Score = 76.2 bits (186), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 102/320 (31%), Gaps = 13/320 (4%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L         VL   I+ F  + +  +   + ++ S      + + ++   +  +L +  
Sbjct: 26  LITFWYMLNMVLLTFIMTFIFYNLLVATRKRIKKFSYLNIQDSLIIIVLYALFAMLLVLI 85

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                     + V +       + R  SD     +A  L  K       L          
Sbjct: 86  S--------YAVVPIIIVQLTELSRVFSDFDVNQFAQSLGPKLYPIVSKLDFNKYISQAG 137

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
             I         FG+  L   L  + +++      + G  +S    S   +    + K  
Sbjct: 138 LLIASTATKVGSFGVNILLAFLLSLLLLLEKNEIKKFGDKLSDSKISFIYNSLVFFGKSF 197

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +   +V++       +IA    +V          P   ALG +  ++ +IP    I   
Sbjct: 198 VKNFGEVMK----VQVMIAFINSVVSMIFLGFMRFPQIWALGFMIFVLGLIPVAGVIVSL 253

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +++     G I     + L   I   I    L P L+    KLP    F  L+ G   
Sbjct: 254 IPLTVIAFNTGGITKVFGVLLMICIVHAIETYILNPKLMSNRTKLPVCFVFIILLVGEHY 313

Query: 323 MGLLGLFIGPVLMALIAVIW 342
           +G+ GL IG  +   +  I 
Sbjct: 314 LGVWGLLIGVPIFMFLMDIL 333


>gi|229196166|ref|ZP_04322916.1| UPF0118 membrane protein [Bacillus cereus m1293]
 gi|228587324|gb|EEK45392.1| UPF0118 membrane protein [Bacillus cereus m1293]
          Length = 337

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 107/325 (32%), Gaps = 19/325 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     +SI     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLSIIAYNVGGVMYVVYILIFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLL 326
                LP   TF  L+     +G+ 
Sbjct: 287 SAKTNLPIFYTFIILIFSEHFLGIW 311


>gi|313639226|gb|EFS04161.1| YubA [Listeria seeligeri FSL S4-171]
          Length = 238

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 72/233 (30%), Gaps = 19/233 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  ++ + ++  +I  ++ + +Y               LK   AP++ A I  +   P+
Sbjct: 9   KQLFIDNKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIVLAGISYYLFNPV 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 K +    +   +  V ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKK-KWKRGWAIALLYVVIIGLIILLFSFVIPAVKDQIVSLFKTFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +  + ++S          T +  + I  +         + L    + 
Sbjct: 128 NEFSQSSLFDQLKDKLSTNMSDIMKTLSEKGTSVLNSAITSVGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
           + +     +  +DG  +   L  +      A+ +++       I S   G  I
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAHTRQVLGEANHQISSYIRGQII 236


>gi|227514228|ref|ZP_03944277.1| permease [Lactobacillus fermentum ATCC 14931]
 gi|227087392|gb|EEI22704.1| permease [Lactobacillus fermentum ATCC 14931]
          Length = 346

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 94/320 (29%), Gaps = 19/320 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           Y  +     +L   I  +                  T + +++ + ++      +     
Sbjct: 28  YEARSLMNTILLTFIFTYLIVHWVRLVQRWIPRVPVTLVVLLSYLLLILGLFYVVTDYVP 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++ ++ + ++   Q                  +++        Q +   +      
Sbjct: 88  MLVNQLVKMTNSLITFYQS-----------------ADMHWLIKYLNQFVSSSTLATQAR 130

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +               IA+    +   A +   +P   ALG++  I +++P    I   
Sbjct: 191 GKKFVNTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFIFSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G+ GL +G  +   +  I 
Sbjct: 311 FGVWGLIVGVPIFTFLLDIV 330


>gi|270291439|ref|ZP_06197661.1| permease [Pediococcus acidilactici 7_4]
 gi|304385152|ref|ZP_07367498.1| permease [Pediococcus acidilactici DSM 20284]
 gi|270280285|gb|EFA26121.1| permease [Pediococcus acidilactici 7_4]
 gi|304329346|gb|EFL96566.1| permease [Pediococcus acidilactici DSM 20284]
          Length = 350

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 56/360 (15%), Positives = 115/360 (31%), Gaps = 19/360 (5%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            +   + +  W  +  +L+ +Y L+GF + +L  +I  F +     +       +     
Sbjct: 6   RIWQKKSVQLWTTLAALLLIVYLLRGFMSQILLIVIFSFVAHVGIKNIRKYLHVNQPLGT 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           +I    ++    V   F       ++K + + +  A                  +   + 
Sbjct: 66  LIFYSVLLAFAAVVFSFTASMLYDQLKGIPALIGQAINS--------DAFNNKYFQGIIN 117

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
               +               N +  I   A    +      +  +       F +    S
Sbjct: 118 EIAKNTTAVKGSQHLAMSGLNQLGRIGIAAEHVMIALFLSLVFNLTYNHLREFGHAILHS 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             Q L +L  +L   Y   +  ++            II      ++    W+ G+P  + 
Sbjct: 178 RYQGLFNLVYYLLRKYVLILGTVIET--------QLIICSINTGLMVIGLWIIGIPKLLL 229

Query: 244 LGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           + +I  ++ +IP    +     +SI       + +   +    A+  F     L P L+ 
Sbjct: 230 MAIIVFVLGLIPVAGVLISLIPLSIVAFSANGLVSVVEVLALVAVIHFFESYFLHPRLMA 289

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN--KEKISSNF 360
           G   LP   TF  L+ G + +G  GL +G   +A    +    I   +    KE I   F
Sbjct: 290 GATDLPVFVTFITLIIGAKMIGTWGLIVGIPTVAFFIDLLGIKIKRRRPKNPKEAIEEEF 349


>gi|38679233|gb|AAR26251.1| CpsX [Streptococcus thermophilus]
          Length = 172

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%)

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                +   +  +  I+     + F+  +I A   G +      +   P    + ++   
Sbjct: 1   FIWVGYGKTFHYVVAILNNRFHNFFVYQSIEACILGTLCYIGMRIFNFPYAATISILIGF 60

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            AMIP         +   L++  ++  A     +  I        + P++VGG   LP +
Sbjct: 61  SAMIPVLGAYIGVTIGTILIMTHSVILALLFVAYVVILQQFKGNLIYPYVVGGSTGLPVV 120

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                +  G    G+LG+ +     A +  I K++++  ++ K
Sbjct: 121 WVILAITIGSALGGILGMLVSVPGAATLYQIVKDNVVTREKAK 163


>gi|229136256|ref|ZP_04265004.1| hypothetical protein bcere0014_51260 [Bacillus cereus BDRD-ST196]
 gi|229170140|ref|ZP_04297828.1| hypothetical protein bcere0007_50740 [Bacillus cereus AH621]
 gi|228613317|gb|EEK70454.1| hypothetical protein bcere0007_50740 [Bacillus cereus AH621]
 gi|228647194|gb|EEL03281.1| hypothetical protein bcere0014_51260 [Bacillus cereus BDRD-ST196]
          Length = 344

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 109/355 (30%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ ++ + LY ++     +L   ++ +           K       +
Sbjct: 4   KNLFQSKGFQRLIVLVLLALILYGMQSMLNLILITFMLTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +  +  V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIALLYVMLVAGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSVILSLFFLLEKARIVAFTSKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IAI   ++   A W+ G 
Sbjct: 178 SRLAIFYNEI------------EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMILIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|184154592|ref|YP_001842932.1| hypothetical protein LAF_0116 [Lactobacillus fermentum IFO 3956]
 gi|183225936|dbj|BAG26452.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
          Length = 346

 Score = 76.2 bits (186), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 41/320 (12%), Positives = 95/320 (29%), Gaps = 19/320 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           Y  +     +L   I  +                  T + +++ + ++      +     
Sbjct: 28  YEARSLMNTILLTFIFTYLIVHWVRLVQRWIPRVPVTLVVLLSYLLLILGLFYVVTDYVP 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++ ++ + ++   Q                  +++        + +   +      
Sbjct: 88  MLVNQLVKMTNSLITFYQS-----------------ADMHWLMKYLNRFVSSSTLATQAR 130

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +               IA+    +   A +   +P   ALG++  IM+++P    I   
Sbjct: 191 GKKFINTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFIMSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G+ GL +G  +   +  I 
Sbjct: 311 FGVWGLIVGVPIFTFLLDIV 330


>gi|217962928|ref|YP_002341506.1| hypothetical protein BCAH187_A5618 [Bacillus cereus AH187]
 gi|217065881|gb|ACJ80131.1| putative membrane protein [Bacillus cereus AH187]
          Length = 314

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 93/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++    + L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIAITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYTEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   ++++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|163943119|ref|YP_001648003.1| hypothetical protein BcerKBAB4_5231 [Bacillus weihenstephanensis
           KBAB4]
 gi|163865316|gb|ABY46375.1| protein of unknown function UPF0118 [Bacillus weihenstephanensis
           KBAB4]
          Length = 344

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 109/355 (30%), Gaps = 23/355 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EES 58
           + +   +G  R +++ ++ + LY ++     +L   ++ +           K       +
Sbjct: 4   KNLFQSKGFQRLIVLVLLALILYGMQSMLNLILITFMLTYLMDRFQKFISRKLDHFMPIN 63

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              +  +  V ++    + L        +++ +L+ +  +  ++                
Sbjct: 64  RKIIIALLYVMLVAAIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD------SELIKYA 117

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            + +    LS      +       TN   F  +      +           +     F  
Sbjct: 118 VNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSVILSLFFLLEKARIVAFTSKFKE 177

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                   ++            +   +   +          +IAI   ++   A W+ G 
Sbjct: 178 SRLAIFYNEI------------EYFGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGF 225

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  + L ++  ++ +IP    I     + +     G I     + +   +   +    L 
Sbjct: 226 PQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           P  +     LP   TF  L+     +G+ GL IG  +   +  +   +   ++++
Sbjct: 286 PKFMSQKTNLPIFYTFMILIFSEHFLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 340


>gi|296112146|ref|YP_003622528.1| transport protein [Leuconostoc kimchii IMSNU 11154]
 gi|295833678|gb|ADG41559.1| transport protein [Leuconostoc kimchii IMSNU 11154]
          Length = 332

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 111/341 (32%), Gaps = 27/341 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + + R+ ++ +I++ ++FL+ F + +L  +I  + +           + S +F  V   
Sbjct: 9   KRQLYRYFVLLVIILLIFFLRQFMSLLLLTIIFSYLAINAAKRLSRFLKLSRSFAIVAVY 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
              + +  + +       + ++K +++                          +      
Sbjct: 69  AIFIAIIALSINHGASTVVHQVKSMIT-----------------------LTMDSSWHAN 105

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              + +      ++ +   D +                 ++  ++  F F      +   
Sbjct: 106 GFLKDIYKNIHQYINSLNTDQLISKGFSQLNQVGHVLYELVLALLFSFIFSMTYPQLKSW 165

Query: 188 LDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +     +  ++ +   I      ++   F    +I +   + +    +    P  +  
Sbjct: 166 SLNFLHSPYKKFFGEFYIIVHRFIIILGRLFEVQLLIGVINTIAMVIVLYFLHFPYLIGF 225

Query: 245 GVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  I+ +IP     IS   ++I   I GN      + +  A   F+    L P  +  
Sbjct: 226 TILIFILGLIPVFGVVISLVPLAITAFIIGNWHTVLIILIAVACIHFLESYFLHPHFMSQ 285

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +P L     L+   +  G+ GL IG  ++  +   ++ 
Sbjct: 286 RTHMPILVILLNLIIMEKIFGVWGLVIGLPILTFLLDFFRI 326


>gi|257387204|ref|YP_003176977.1| hypothetical protein Hmuk_1144 [Halomicrobium mukohataei DSM 12286]
 gi|257169511|gb|ACV47270.1| protein of unknown function UPF0118 [Halomicrobium mukohataei DSM
           12286]
          Length = 341

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 114/361 (31%), Gaps = 25/361 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   M   QG++  ++    L+++  L      V  A+ + +  +P+    + +      
Sbjct: 1   MYCGMRRRQGVLVGLVAATGLLTIVLLWSVVTTVFFAITVAYVLYPLRRLLVERGTHRRI 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A   +V+ + +  +               +V  +    +    +  +L  +P      
Sbjct: 61  AAAAATSVAFLAVAAL---------------IVPLLWSLYRRRDTLLAYLRTLPTSFEFE 105

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L         SL   +           I   A           L +    + ++     
Sbjct: 106 VLGMPFGFEVGSLAATARVA--------ITNLAVEVAGSAPIIGLKLFLFTLLVYALLLR 157

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             +    +       + +  + +       + + ++     A+G  L+    +   G P 
Sbjct: 158 PSAAPAVVFRAVPEEYQSLVRTMHERTRNTLYAIYVLQGATALGTFLIAYLVFAGLGYPG 217

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN--IFNATCLFLWGAIELFIVDKTLRP 298
              L  +  I+  +P   P    AV     +        AT L +      F+ D  +RP
Sbjct: 218 AFGLAAVAGILQFVPVVGPSILIAVVAATDVVAGDLTGAATLLVIGLVFVGFLPDAIIRP 277

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            L      +P    F G  GGV ++G++G   GP+++AL     +         + ++ S
Sbjct: 278 QLAPYTADIPASLYFIGFTGGVLSIGIVGFIAGPLVVALFVEAVELLTNERPTVQRQLDS 337

Query: 359 N 359
            
Sbjct: 338 E 338


>gi|165872524|ref|ZP_02217157.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|190568947|ref|ZP_03021849.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|196036082|ref|ZP_03103482.1| putative membrane protein [Bacillus cereus W]
 gi|196041035|ref|ZP_03108332.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|196045511|ref|ZP_03112742.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|227818208|ref|YP_002818217.1| hypothetical protein BAMEG_5735 [Bacillus anthracis str. CDC 684]
 gi|164711747|gb|EDR17291.1| putative membrane protein [Bacillus anthracis str. A0488]
 gi|190560014|gb|EDV13997.1| putative membrane protein [Bacillus anthracis Tsiankovskii-I]
 gi|195991249|gb|EDX55217.1| putative membrane protein [Bacillus cereus W]
 gi|196023718|gb|EDX62394.1| putative membrane protein [Bacillus cereus 03BB108]
 gi|196028203|gb|EDX66813.1| putative membrane protein [Bacillus cereus NVH0597-99]
 gi|227006365|gb|ACP16108.1| putative membrane protein [Bacillus anthracis str. CDC 684]
          Length = 314

 Score = 76.2 bits (186), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/328 (10%), Positives = 93/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++    + L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDHFMPINRKLIIAFLYVMLIGGIAITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYTEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   ++++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEMEKD 310


>gi|167463629|ref|ZP_02328718.1| hypothetical protein Plarl_13919 [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 343

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 95/326 (29%), Gaps = 29/326 (8%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           Y L      +L   I  F  + I S                + ++   +      V    
Sbjct: 27  YMLSDMLNILLFTFIFSFLFYTICSLLLKLTHKWVRIPEKLMILLVYGAFGVFVGVASYM 86

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                  ++  +V+ +V                              +    +  + +  
Sbjct: 87  YVPVLAKQIVSIVNIIVNF---------------------NPSDYKDAFHPKVFEMIQRV 125

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP--- 197
              + +     +A         + LSI   +I  FFF  +   I + L            
Sbjct: 126 DIGSYLSSAGNYAVNTTKNIGGFLLSIFLSLILSFFFSWERRGIVKFLQRFETSKVGFIY 185

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            Y+K+  R              +I+    ++     +  G P  + LGV+   + ++P  
Sbjct: 186 EYYKQFGRNFVNSFGKVMQVQILISFINSILSVIMLYFMGFPQILGLGVMIFALGLVPVA 245

Query: 258 APISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I     +SI     G   +   + +   I        L P L+   +KLP   TF  L
Sbjct: 246 GVIVSLIPLSIIAFQIGGWIHIVYVLVMITILHAFESYVLNPKLMSVKMKLPVFFTFAVL 305

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   R +G+ GL IG  L      + 
Sbjct: 306 ILFERLIGVWGLLIGIPLFMFFLDLV 331


>gi|15895070|ref|NP_348419.1| permease [Clostridium acetobutylicum ATCC 824]
 gi|15024766|gb|AAK79759.1|AE007688_8 Predicted permease [Clostridium acetobutylicum ATCC 824]
 gi|325509208|gb|ADZ20844.1| permease [Clostridium acetobutylicum EA 2018]
          Length = 318

 Score = 75.8 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 106/335 (31%), Gaps = 24/335 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +++   +V   F+K +F P LS +I+     PIY+     K       AV++ 
Sbjct: 5   KKLIECIILLLFFVVFTLFIKYYFKPFLSIVILTILCSPIYNLLSKHKVFGDRINAVLSI 64

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  +  + +  +  +   ++   +                L  I        L   ++
Sbjct: 65  IVINVMIFLAIFLIGNFIAQKLNIYLQHYHNVLD-----INKLPIIGESNVNILLNKINV 119

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              +               D I  +      ++         + +A   F ++       
Sbjct: 120 FVDKLFNADFFKKSAVYTTDGILTYFVSIMSVYFILVDKYDIVNLAEKLFTKNK------ 173

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                          I       I+S     T + +   +     +++ G+     LG+I
Sbjct: 174 -------------VHILMKKFSDIKSLLRVETFLVLITTIQTIIGFFVLGIEDCFMLGII 220

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ ++P    I      I   +    +      +   I L +  + +    +   +K+
Sbjct: 221 CGILDILPYVGTIIIFIPLIIYKMYEKNYVTIFGLIALYIFLQVSRQIMETNFMSSKLKI 280

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L     +  G++  G++GLFI P+ +     I 
Sbjct: 281 HPLIILISVYIGIKAFGIIGLFIAPIYVITAKEII 315


>gi|159184523|ref|NP_353922.2| hypothetical protein Atu0902 [Agrobacterium tumefaciens str. C58]
 gi|159139830|gb|AAK86707.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
          Length = 386

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/345 (12%), Positives = 107/345 (31%), Gaps = 17/345 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + + +  ++ L     PV+ A+++G           S     +    +++T+    +F
Sbjct: 57  IFLIMSMAVIHELSMILMPVVMAVVVGMILGISAEKLASYGIPGAGVALILSTLVAAVIF 116

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            V            +  L+  V      G  +     D       +  W    +   S+ 
Sbjct: 117 FV------------VNSLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAATFSMG 164

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +S   L +   + I    +      +   +   F+   L F Y         +      
Sbjct: 165 SMSMESLISRSGEIITLLGANVTPAIVQGLI---FLAALLMFLYSRLRLRKALIMVFPAR 221

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  +I   V KV+ + F   ++I    G+ +    ++ G+   +  G+   + + +
Sbjct: 222 HQRLRTIRIIGSVEKVLGTYFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFV 281

Query: 255 PGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P       T       ++   N+  A            +++    P +VG  +++     
Sbjct: 282 PFLGITLMTISLTIAGIIAHDNMILALLPAGVFFTIHLLMENLAFPAVVGRNMEINPFLV 341

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           F  ++      G  G  +   L  +   + +E   + +   +   
Sbjct: 342 FVMIIFWTWMWGAAGAMLALPLSLIAMTVTRELFPSRRVVPKLPD 386


>gi|149202519|ref|ZP_01879491.1| hypothetical protein RTM1035_07879 [Roseovarius sp. TM1035]
 gi|149143801|gb|EDM31835.1| hypothetical protein RTM1035_07879 [Roseovarius sp. TM1035]
          Length = 351

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 109/330 (33%), Gaps = 19/330 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   ++L  L   +     + +A+I+   +    +S    +         +A++  + L
Sbjct: 5   IIAFAVVLFLLVQARFLLISLATAIILFSLTSDAITSIARVRLGPVRVPNWLASIVALLL 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               LL L    + ++  ++S  +            +    G               +++
Sbjct: 65  ISAALLSLSAVILSQINTVLSTTLAYTDRAPQAISAMVAWLGP-----------DAEEAV 113

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T      +  +   A       +   L + F+     +F     S+       G+
Sbjct: 114 FNAVSTLDVAGYLRALAGQAGGIMQGTVLVILFVGFLFAERIWFTTKLESL------FGD 167

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I   +   +    L  T++++  GL++        +    ALG++T ++  
Sbjct: 168 AKKAERVGRIISSIIHRVNYYLLVKTLVSVVTGLMVYGVAQFFALDLAGALGILTFVLNY 227

Query: 254 IPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    I  T +   +      +   A  +FL   I  FI    + P L+G  +++    
Sbjct: 228 IPSIGSIVATVLVALVAYVQLADGTTALVIFLIVGIIQFINGNIIDPMLMGRALRVSSFG 287

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L       G+ G+F+   +M  + ++
Sbjct: 288 IIISLAFWAAVWGIPGMFLAVPIMVALMIV 317


>gi|16127109|ref|NP_421673.1| hypothetical protein CC_2877 [Caulobacter crescentus CB15]
 gi|221235907|ref|YP_002518344.1| hypothetical protein CCNA_02971 [Caulobacter crescentus NA1000]
 gi|13424493|gb|AAK24841.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 gi|220965080|gb|ACL96436.1| hypothetical membrane spanning protein [Caulobacter crescentus
           NA1000]
          Length = 342

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 94/342 (27%), Gaps = 25/342 (7%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++  G    +   +    LY       P   AL++      +    +    ++  ++   
Sbjct: 1   MSKTGASFLVNFAVAAGLLYVFSAVLWPFTLALVLAILITSLSDRVVRLLPKARPWMVFA 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
            T  ++   IV  + +    +     +V ++         +   +    GG+ +     +
Sbjct: 61  ITAVIVGGIIVASMAVV---IGGGARIVERMPAMMARIDQLLALIHLPGGGVMSLAALAQ 117

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            +                     +   A        +    +   +I LFF       I 
Sbjct: 118 KVE--------------------LGPLADGLLTSVQNASAGLGLTLIFLFFLLLSKPMIE 157

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++D +           +       +       +I  +             G+ S +   
Sbjct: 158 KRIDQIVASRGGQGLAMVLERSFSGVERYMYVQSITGLMIAFGSWVVMRAVGLESALFWS 217

Query: 246 VITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           ++  + A +P    ++         LL    +  A  +F+   +   IV   + P +   
Sbjct: 218 LVIFLFAYLPVLGVLAGSVGPTLFALLQFPTLTPAIAIFVGIQVVSSIVGNLVLPKMQAD 277

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              +    +   +       G+ G F+   L   +     + 
Sbjct: 278 SQNIDPAASLIAVGMWTVLWGVPGAFLAIPLTLALMYALAQY 319


>gi|158426039|ref|YP_001527331.1| hypothetical protein AZC_4415 [Azorhizobium caulinodans ORS 571]
 gi|158332928|dbj|BAF90413.1| protein of unknown function [Azorhizobium caulinodans ORS 571]
          Length = 349

 Score = 75.8 bits (185), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 105/339 (30%), Gaps = 25/339 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
               + ++  +   ++  ++   +   APV+ A+ +    WP+      +    +   ++
Sbjct: 12  FKGQKILIGLIATVVLAAAVSLAQVILAPVVFAIFVIAVVWPVQRRLEQRIG--TGLASL 69

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  +  + +    +  + +      +   +              WL      +       
Sbjct: 70  LTLLLTLAVIGSIVSMVVWGFSHVAQWTFANAGRFQAIYAQAGDWLEGHGFLL------- 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                       + +      + ++ R               ++   + + F   +    
Sbjct: 123 ------------AGSVADHFNVRWLLRALQEISARANSLASFLVVTAVFVVFGLLEADIF 170

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            +Q+  L    + A+       +   +++     T+++I  G+++      +G+    A 
Sbjct: 171 VRQVARL--PRYGAFLMASGADIASKMQTYMWVRTLMSIATGILVWGFTLASGMELATAW 228

Query: 245 GVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           GVI   +  IP   P +         L+   +   A  +F+   +  F+    L P + G
Sbjct: 229 GVIALALNYIPVIGPFTATLLPTVFALVQFESWRMALFVFVVLNVVQFVSGSYLEPRIAG 288

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             + +      F +       GL G FIG  L+      
Sbjct: 289 RTLAISPFLVLFAVFFWSFLWGLAGAFIGVPLVIAALTF 327


>gi|268679846|ref|YP_003304277.1| hypothetical protein Sdel_1219 [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617877|gb|ACZ12242.1| protein of unknown function UPF0118 [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 355

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 124/346 (35%), Gaps = 13/346 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
               + W+ +  + V ++    F   +  AL++  T  P+    +    + ++       
Sbjct: 3   NNTFLIWLSIATLCVLIWLFAPFLKSLGVALLLALTMAPLQRFLLKLLTQKTSLSTAKKN 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    L  + L  + +  +      + +        I      S I   +     +    
Sbjct: 63  LFSAALMTLFLSLIIFLPLSLFFFQLFQHPTTIIETIRTFD--SQIHLDITLLPSYLSWA 120

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
             P    I+     K   I  + ++       FL     ++ +I+  FFF   G S+   
Sbjct: 121 KEPFETLIMLSNMHKDEIIALLSKWLGSGLKTFLGMLSEMVMIIVFFFFFNLYGRSLFLF 180

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L  +   L     ++    +   +   F  +  + + +GL  G         + + LG +
Sbjct: 181 LIPIVP-LSRTIKRQFISEMSITLSVVFYTLLGVMVTQGLAFGLFIAFFDGYNALLLGFL 239

Query: 248 TAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV---- 301
             I ++IP     + +  V+I    +G++ NA  + L+    + F +D  ++  ++    
Sbjct: 240 AGISSVIPIVGTALVWIPVAISEYWQGDVMNAVIIALYSWAMMAFFIDNIVKLLMLNYVN 299

Query: 302 ----GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
               GG ++      FF +V G+   G  G  IGP L+AL   + K
Sbjct: 300 RSMNGGEVRTNEFIIFFSIVAGLGAFGFWGFIIGPALVALAISVLK 345


>gi|217033512|ref|ZP_03438941.1| hypothetical protein HP9810_905g31 [Helicobacter pylori 98-10]
 gi|216944037|gb|EEC23468.1| hypothetical protein HP9810_905g31 [Helicobacter pylori 98-10]
          Length = 331

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 122/341 (35%), Gaps = 23/341 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           +Y  + F    L A ++    + +      +        + +  + +  + IVPL F+ Y
Sbjct: 2   IYLYQDFLMDALIAGLLCVGFFQVKVFLDKRFLN--LISSFLCVLVLASVLIVPLYFIVY 59

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
                + E+        +    + +WL         +E  +   +         E F   
Sbjct: 60  KSSNIIFEI------NFEKFSALIKWLK-----GTITENLSHFPTIHDGASKFLENFSAA 108

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +   ++ R +S  G   L      +F++  LFFF+  G    +    +         KKI
Sbjct: 109 SITGYLLRISSYVGKYSLKLITDALFILGLLFFFFYYGERFYRYFLGVLPLGM-NQSKKI 167

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
              V  ++R   L   I  I EG+  G      G        +      +   G  + + 
Sbjct: 168 FEEVAGILRIVLLTSLITVILEGVAFGLMIVWFGHDGWSLGILYGLASLVPAVGGALIWI 227

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRP--------FLVGGPIKLPFLPTFF 314
            ++IY L  GN+  A  + L+  + +  ++D  ++P         +    +K+  +  FF
Sbjct: 228 PIAIYELYHGNVNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINEMLIFF 287

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            ++ G+   G  G+ +GP + A    + +       +N +K
Sbjct: 288 SMIAGISQFGFWGIIVGPTITAFFIALLRLYENYFIQNDQK 328


>gi|160902022|ref|YP_001567603.1| hypothetical protein Pmob_0546 [Petrotoga mobilis SJ95]
 gi|160359666|gb|ABX31280.1| protein of unknown function UPF0118 [Petrotoga mobilis SJ95]
          Length = 318

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/340 (14%), Positives = 101/340 (29%), Gaps = 23/340 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           M  + + + L+  +F     A ++  + +          F      +S   AV++ + V+
Sbjct: 1   MSLIYLVVFLLLAHFSPFIIAALILGVFLSMLIEAPQKLFSK--VMNSKISAVLSHILVL 58

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +   +  F   + E  +L S +             L +                   
Sbjct: 59  GLVLYAAITFFPVVISEGNKLFSMLSSLTIPQEEALAQLPEW------------------ 100

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              +     L  N  DF     ++      +   S I +++               L  L
Sbjct: 101 --LVTFINDLNKNLSDFALGLMNQLLSSIPNLITSAIVLVVTTAAIGSLKTITKNNLWKL 158

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     K  +           G  + AI  G  +G   ++ G+PS + LG++  I 
Sbjct: 159 YPVNDREKGLKFMKDTYSQFERFVHGQFLTAIMVGTFIGLMSFIFGIPSALFLGILAWIT 218

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             IP     IS   + +    +  +       +       +      P +    + L + 
Sbjct: 219 DFIPYLGVVISAVPLLMLAFTENGLIGLIIGLVILTAANQLEMWFFSPRIQSNALNLHWF 278

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                ++        LG+ I   ++  I   W+  ++ IK
Sbjct: 279 VIIISILLFGELFSFLGILIALPIVVYIRNFWEYFVIKIK 318


>gi|299782761|gb|ADJ40759.1| Permease [Lactobacillus fermentum CECT 5716]
          Length = 346

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 94/320 (29%), Gaps = 19/320 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTFLAVIATVSVMCLFIVPLLFLFY 83
           Y  +     +L   I  +                  T + +++ + ++      +     
Sbjct: 28  YEARSLMNTILLTFIFTYLIVHWVRLVQRWIPRVPVTLVVLLSYLLLILGLFYVVTDYVP 87

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
             + ++ ++ + ++   Q                  +++        + +   +      
Sbjct: 88  MLVNQLVKMTNSLITFYQS-----------------ADMHWLMKYLNRFVSSSTLATQAR 130

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           +G+       + FG + +   +S+I          +        L S     F       
Sbjct: 131 HGVTLAVTTLTNFGTLLVAVAMSVILSFFYTIELRQMNEFSKTFLSSQHLSWFFKDLDFF 190

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF- 262
            +               IA+    +   A +   +P   ALG++  I +++P    I   
Sbjct: 191 GKKFINTFGVVLEAQFFIALTNTALTMIALFFMKMPQIFALGLMVFIFSLVPVAGVIISL 250

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             +S+     G I     L +   +   I    L P  +    +LP   TF  L+     
Sbjct: 251 VPLSMVGYSVGGIRYIVYLIIVILVIHMIESYVLNPKFMSSRTELPIFYTFVVLLVSEHL 310

Query: 323 MGLLGLFIGPVLMALIAVIW 342
            G+ GL +G  +   +  I 
Sbjct: 311 FGVWGLIVGVPIFTFLLDIV 330


>gi|302871065|ref|YP_003839701.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302573924|gb|ADL41715.1| sporulation integral membrane protein YtvI [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 370

 Score = 75.8 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/343 (15%), Positives = 106/343 (30%), Gaps = 13/343 (3%)

Query: 11  IMRWMIMFIILVSLYFLKGF----------FAPVLSALIIGFTSWPIYSSFISKKEESST 60
           I   +I   I    Y ++ F          F PV+  L I   S P+      + + S T
Sbjct: 14  IYVILISAFIFSCAYLIRTFDIFMRFVIKAFIPVIIGLFIAEVSEPLLKYLEKR-KVSRT 72

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A++  +++  +    L    Y  + E   LVS +         + + L  +   +   
Sbjct: 73  ISAILILIALNLILGFMLAEGIYILVNECMSLVSSLQNI--DYDKIYQMLDKLFASVKNI 130

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                          ++E     N I  +     +     L       F +++ FFF RD
Sbjct: 131 YSGLPVPIVNFIQSGVNEITNVLNQIATLSLKVVKVIPATLKGITIWFFSVLSSFFFMRD 190

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +   L              I   V   +        I++    L       +   P 
Sbjct: 191 RHKMRAWLIQNFSAQLYREISSIVFKVIDSVVDYAKSQIILSALMFLSGLIGLSIIRAPY 250

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + + ++  ++++IP           I         N     L   + +  + +     +
Sbjct: 251 FLVVSLLLGLLSIIPIIGSGIILLPWIAGSFIAGDTNFGMKLLVVYLIILGLREFASIKI 310

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           V   + +    T   +  GV   G  G  IGP+L+  +  +++
Sbjct: 311 VASQVGISTFTTLVSIYAGVEVFGAWGFVIGPLLVVFLKAVYE 353


>gi|308446460|ref|XP_003087184.1| hypothetical protein CRE_07198 [Caenorhabditis remanei]
 gi|308260230|gb|EFP04183.1| hypothetical protein CRE_07198 [Caenorhabditis remanei]
          Length = 241

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 107/245 (43%), Gaps = 6/245 (2%)

Query: 43  TSWPIYSSFISKKE-ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
            +WP+Y   +        T  A +    V+ +  +PL F  +    E + L   +     
Sbjct: 1   MTWPMYKRILRMFGSNRPTLSASLMITLVVLVVGIPLTFAIFILQHEGRNLYFDLQRQLS 60

Query: 102 HG-IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
            G + VP ++ ++P          + ++   +    +        +     +        
Sbjct: 61  SGHLTVPDFIRELPIIGKEVSRTVREINADPTSLSQTIGLWIQGHM----NYGKFVLNEI 116

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
               + + F I++LFFFYRDG +I +Q+    + L           + +  R+   G+ +
Sbjct: 117 TKNLVKLGFAIMSLFFFYRDGQTILEQVSKALQMLIGPRIHHYLDTISETTRAVVYGVGL 176

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
            A+ +  + G +Y++AGVP+ + L ++T +MA+IP G P+++ AVS++L  +G    A  
Sbjct: 177 TAVAQAFLAGVSYFVAGVPNPMVLTIVTFLMALIPFGPPVAYGAVSLWLFSQGQTMEAIG 236

Query: 281 LFLWG 285
           +  WG
Sbjct: 237 VMAWG 241


>gi|194467528|ref|ZP_03073515.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
 gi|194454564|gb|EDX43461.1| protein of unknown function UPF0118 [Lactobacillus reuteri 100-23]
          Length = 347

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 106/342 (30%), Gaps = 20/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +  +    + R+ ++ +I+V L+ ++     +L   I+ +                S++ 
Sbjct: 6   KHFIENVKLRRFTVLLLIIVVLWLMRSMMNLILFTFILTYLVVSWVRLVQRWLPRMSTSL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + ++  V ++ L  + +         ++ ++V+ VV                        
Sbjct: 66  IVIVTYVLLIVLLYLGVTRYLPVLSRQVVKMVNSVVHFYSTHQAT--------------- 110

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               +      +   +      +GI       +  G I + + +S+I          +  
Sbjct: 111 --MIYRYVSHYVSTATIMSQVRHGITIAVSTLTSIGAITISFVMSLILSFFYTLELKQMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 LDS     F        +               IAI   ++         +P  
Sbjct: 169 EFSHSFLDSDFGWFFQDI-DYFGKKFVNTFGVVLEAQFFIAICNTVITTICLLFMRMPQI 227

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            AL +I  I +++P    I     +++     G + +   + +   I   +    L P  
Sbjct: 228 FALSLIVFIFSLVPVAGVIISTIPLAMVGYSVGGVRDVVYIIIMIIIIHTLEAYVLNPKF 287

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +     LP   TF  L+ G    G  GL +G  +   +  + 
Sbjct: 288 MASRTDLPIFYTFIVLLIGEHLFGTWGLIVGVPIFTFLLDVL 329


>gi|218900567|ref|YP_002448978.1| hypothetical protein BCG9842_B5387 [Bacillus cereus G9842]
 gi|218545245|gb|ACK97639.1| putative membrane protein [Bacillus cereus G9842]
          Length = 314

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 93/328 (28%), Gaps = 23/328 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
               +L   I+ +           K       +   +     V ++    + L       
Sbjct: 1   MLNLILITFILTYLMDRFQKFISRKLDHFMPINRKIIIAFLYVMLIGGIAITLFKYLPVL 60

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +++ +L+ +  +  ++                 + +    LS      +       TN 
Sbjct: 61  TIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSITNV 114

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             F  +      +           +     F          ++            +   +
Sbjct: 115 GKFGLQVLLSLILSLFFLLEKSRIVGFTAKFKESRLAIFYTEI------------EYFGK 162

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TA 264
              +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     
Sbjct: 163 KFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFP 222

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + +     G I     + +   +   +    L P  +     LP   TF  L+     +G
Sbjct: 223 LCMIAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLG 282

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKEN 352
           + GL IG  +   +  +   +   I+++
Sbjct: 283 VWGLIIGIPIFIFLLDVLDVTSDEIEKD 310


>gi|218442097|ref|YP_002380426.1| hypothetical protein PCC7424_5210 [Cyanothece sp. PCC 7424]
 gi|218174825|gb|ACK73558.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7424]
          Length = 345

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 87/314 (27%), Gaps = 15/314 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + + ++   L   + ++     + +ALI+      +            +   +I+   + 
Sbjct: 7   VGFTLLIFSLYIFWEIRQLILLLFTALILAEALSILVLKLQE-FGLKRSQSLLISVGFLF 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              I     +    + +++ELV  V       I   + +           L T +    Q
Sbjct: 66  AFIIGAFWLIIPPFIQQIEELVKLVPAGIAQLITTLQEIGTQFDPELIQALPTFNELIGQ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                         I+ I           L   LS++ ++        +     Q     
Sbjct: 126 ----------LQPLINQIANRGLNIFYTSLGMILSLVLLLALTLMLLANPTPYRQGFIRF 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I     + +    + +    I   L+      + G+P   +  +++  +
Sbjct: 176 FPSFYRERVDRILVQCDQTLTRWLIVIMAHMIIMTLLSWIGLLIFGIPLAFSQALLSGAL 235

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCL----FLWGAIELFIVDKTLRPFLVGGPIKL 307
             IP   P+      I + +    +    +     +       +  + L   ++   I L
Sbjct: 236 TFIPNLGPVLAMIPPIAIALLEASWKPWAVIILYTIIYITIQQLDKRILASRVLKQHICL 295

Query: 308 PFLPTFFGLVGGVR 321
               T    +    
Sbjct: 296 LPGITLLAQIFFAS 309


>gi|148543369|ref|YP_001270739.1| hypothetical protein Lreu_0130 [Lactobacillus reuteri DSM 20016]
 gi|184152779|ref|YP_001841120.1| hypothetical protein LAR_0124 [Lactobacillus reuteri JCM 1112]
 gi|227364443|ref|ZP_03848533.1| membrane protein [Lactobacillus reuteri MM2-3]
 gi|325683642|ref|ZP_08163158.1| permease [Lactobacillus reuteri MM4-1A]
 gi|148530403|gb|ABQ82402.1| protein of unknown function UPF0118 [Lactobacillus reuteri DSM
           20016]
 gi|183224123|dbj|BAG24640.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
 gi|227070536|gb|EEI08869.1| membrane protein [Lactobacillus reuteri MM2-3]
 gi|324977992|gb|EGC14943.1| permease [Lactobacillus reuteri MM4-1A]
          Length = 341

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 106/342 (30%), Gaps = 20/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +  +    + R+ ++ +I+V L+ ++     +L   I+ +                S++ 
Sbjct: 6   KHFIENVKLRRFTVLLLIIVVLWLMRSMMNLILFTFILTYLVVSWVRLVQRWLPRMSTSL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + ++  V ++ L  + +         ++ ++V+ VV                        
Sbjct: 66  IVIVTYVLLIVLLYLGVTRYLPVLSRQVVKMVNSVVHFYSTHQAT--------------- 110

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               +      +   +      +GI       +  G I + + +S+I          +  
Sbjct: 111 --MIYRYVSHYVSTATIMSQVRHGITIAVSTLTSIGAITVSFVMSLILSFFYTLELKQMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 LDS     F        +               IAI   ++         +P  
Sbjct: 169 EFSHSFLDSDFGWFFQDI-DYFGKKFVNTFGVVLEAQFFIAICNTVITTIGLLFMRMPQI 227

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            AL +I  I +++P    I     +++     G I +   + +   I   +    L P  
Sbjct: 228 FALSLIVFIFSLVPVAGVIISTIPLAMVGYSVGGIRDVVYIIIMIIIIHTLEAYVLNPKF 287

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +     LP   TF  L+ G    G  GL +G  +   +  + 
Sbjct: 288 MSSRTDLPIFYTFIVLLIGEHLFGTWGLIVGVPIFTFLLDVL 329


>gi|310643505|ref|YP_003948263.1| protein [Paenibacillus polymyxa SC2]
 gi|309248455|gb|ADO58022.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2]
          Length = 384

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/324 (11%), Positives = 94/324 (29%), Gaps = 8/324 (2%)

Query: 9   QGIMRWMIMFIILVSLYFLKG----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + +    ++ + +  + F+        APV  + ++ +   P    F  K      F + 
Sbjct: 10  RTVFDIGLIVLTVYLIMFVSSKLYQLAAPVFLSFVVFWCIEPAARYFHRK-GMKKPFASA 68

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           ++ +  + L +     L    + +  ++   +    Q       +   +           
Sbjct: 69  LSVLLFIILLLAIFFGLGLILVTQFTKVAQNLPHYTQIIQT--EFTRILHLSQDKIAALP 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             ++   +    + T + T        F  +F   F  +  +    II  FF   +    
Sbjct: 127 PGVTERVNDYFATATTIATKWAQLGLSFFIQFLSSFTVFMGNFAVAIILAFFLSMEINLW 186

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                S         +  +   V K I +      ++     +++     +  V + ++L
Sbjct: 187 KGIARSKTPKTLKTAYLFLKNHVLKAISAFLKAQALLVGITFVLVFIGLLILQVDNALSL 246

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++ A+  ++P              L            L       IV +   P + G  
Sbjct: 247 ALVAALFDILPLLGVPVIFIPWAVYLFITGNTGLAVGLLIVMAVTVIVRQLAEPKITGNS 306

Query: 305 IKLPFLPTFFGL-VGGVRTMGLLG 327
           I +          +  +   GL G
Sbjct: 307 IGVSSAYLMLSFAIISLSIFGLAG 330


>gi|85703005|ref|ZP_01034109.1| hypothetical protein ROS217_19727 [Roseovarius sp. 217]
 gi|85671933|gb|EAQ26790.1| hypothetical protein ROS217_19727 [Roseovarius sp. 217]
          Length = 351

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 109/330 (33%), Gaps = 19/330 (5%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            +   ++L  L   +     + +A+I+   +    +S    +         +A++  + L
Sbjct: 5   IIAFAVVLFLLVQARFLLISLATAIILFSLTSDAINSIARLRLGPVRVPNWLASIVALLL 64

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               LL L    + ++  ++S  +            +    G               +++
Sbjct: 65  ISAALLSLSAVILSQLNTVLSTTLAYTDRAPQAMSAMVAWLGP-----------DAEKAV 113

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T      +  +   A       +   L + F+     +F     S+       G+
Sbjct: 114 FNAVATLDVAGYLRTLAGQAGGLMQATVLVILFVGFLFAERIWFTTKLESL------FGD 167

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   +I   +   +    L  T++++  GL++        +    ALG++T ++  
Sbjct: 168 AKQAERVGRIVSSIIHRVNYYLLVKTLVSVVTGLMVYGVARYFALDLAGALGILTFVLNY 227

Query: 254 IPGGAPISFTAVSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP    I  T +   +      +   A  +FL   I  F+    + P L+G  +++    
Sbjct: 228 IPSIGSIVATVLVALVAYVQLADGTLALVIFLIVGIIQFLNGNIIDPMLMGRALRVSSFG 287

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               L       G+ G+F+   +M  + ++
Sbjct: 288 IIISLAFWAAVWGIPGMFLAVPIMVALMIV 317


>gi|315453202|ref|YP_004073472.1| outer membrane protein [Helicobacter felis ATCC 49179]
 gi|315132254|emb|CBY82882.1| Outer membrane protein [Helicobacter felis ATCC 49179]
          Length = 353

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/353 (14%), Positives = 120/353 (33%), Gaps = 23/353 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P      +        LY  + F   +L A ++  T + +             F +++
Sbjct: 1   MRPVYFFWLLFCVAFYWMLYLYEDFLMDLLIAGLLCVTIFWLKEFLDKYM--RDLFSSLL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             V ++   ++PL F+             + V    H                      +
Sbjct: 59  CVVVLLSFLVIPLYFII-----------HQSVDFLSHINLEKLSFFFNKFKADVLIFLDR 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +     K         + + ++ RF+S  G   L      + +++ LF  +  G    
Sbjct: 108 FPAINTDAKNFISHLSAQSIMSYVLRFSSDIGKYSLKLASDTVMVLVFLFLCFFYGRHFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +         K I R V  ++R   L   I  + +G+  G+      +       
Sbjct: 168 SYILEILPFE-KIQSKGIFREVAGILRVVLLTSIINVVLQGVAFGALVVWFDLDWLSLGI 226

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGG- 303
           +      +   G  + +  V++Y + + +   A  + ++  + +  ++D  ++P+L+G  
Sbjct: 227 LYGLASLIPIVGGSLVWIPVALYEMYRDHTTIAIVIAIYSIVLIGGLIDSLIKPWLIGFI 286

Query: 304 -------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                   +K+  +  FF ++ G+   G  G+ +GP + A   V+ +    + 
Sbjct: 287 KHRILKISLKINEILIFFSILAGISKFGFWGIAVGPTITAFFIVLLRLYEHSF 339


>gi|227543837|ref|ZP_03973886.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300908905|ref|ZP_07126368.1| membrane protein [Lactobacillus reuteri SD2112]
 gi|227186214|gb|EEI66285.1| permease [Lactobacillus reuteri CF48-3A]
 gi|300894312|gb|EFK87670.1| membrane protein [Lactobacillus reuteri SD2112]
          Length = 344

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/342 (13%), Positives = 106/342 (30%), Gaps = 20/342 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-EESSTF 61
           +  +    + R+ ++ +I+V L+ ++     +L   I+ +                S++ 
Sbjct: 6   KHFIENVKLRRFTVLLLIIVVLWLMRSMMNLILFTFILTYLVVSWVRLVQRWLPRMSTSL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
           + ++  V ++ L  + +         ++ ++V+ VV                        
Sbjct: 66  IVIVTYVLLIVLLYLGVTRYLPVLSRQVVKMVNSVVHFYSTHQAT--------------- 110

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
               +      +   +      +GI       +  G I + + +S+I          +  
Sbjct: 111 --MIYRYVSHYISTATIMSQVRHGITIAVSTLTSIGAITVSFVMSLILSFFYTLELKQMN 168

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                 LDS     F        +               IAI   ++         +P  
Sbjct: 169 EFSHSFLDSDFGWFFQDI-DYFGKKFVNTFGVVLEAQFFIAICNTVITTIGLLFMRMPQI 227

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            AL +I  I +++P    I     +++     G I +   + +   I   +    L P  
Sbjct: 228 FALSLIVFIFSLVPVAGVIISTIPLAMVGYSVGGIRDVVYIIIMIIIIHTLEAYVLNPKF 287

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +     LP   TF  L+ G    G  GL +G  +   +  + 
Sbjct: 288 MSSRTDLPIFYTFIVLLIGEHLFGTWGLIVGVPIFTFLLDVL 329


>gi|228900544|ref|ZP_04064767.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 4222]
 gi|228859095|gb|EEN03532.1| UPF0118 membrane protein [Bacillus thuringiensis IBL 4222]
          Length = 292

 Score = 75.4 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 19/302 (6%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
                     K + +   +     + ++      L        +++ +L+ +  L  Q+ 
Sbjct: 1   MDRFQRFISRKLKVNRKIVIACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNP 60

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                                       ++  +  +     G+D I +  +  G + L  
Sbjct: 61  PD-----------------NEIVKYVLSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQI 103

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            LS+I  +  L    R     S+  DS  +  +            +          +IA+
Sbjct: 104 LLSLILSLFFLLEKERIITFTSKFKDSKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAV 162

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLF 282
              ++   A  + G P  + L V+  ++ +IP    I     + I     G +     + 
Sbjct: 163 VNCILTVIALIVLGFPQLLVLAVMVFLLGLIPVAGVIISLFPLCIIAYNVGGVMYVVYIL 222

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  +   +    L P  +     LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 223 VFITVIHALESYFLNPKFMSAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 282

Query: 343 KE 344
             
Sbjct: 283 DI 284


>gi|114798684|ref|YP_761782.1| hypothetical protein HNE_3106 [Hyphomonas neptunium ATCC 15444]
 gi|114738858|gb|ABI76983.1| putative membrane protein [Hyphomonas neptunium ATCC 15444]
          Length = 362

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/351 (12%), Positives = 99/351 (28%), Gaps = 34/351 (9%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              +  +  +   +I+  LYF +   A    A+ +        +   +    S T     
Sbjct: 3   SATKSGIWIIATGVIIALLYFGREILATFAMAVFLFLIIEGFGTVINN---ASRTIHIGP 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A +  + L +   +         + E         +    +   +  + G   A  L   
Sbjct: 60  ARILAVLLVVGGFVGFIALMADGVAEFGRDGSEYEEKINALIADVYRLAGLKDAPTLTQL 119

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                                  I           +   + + F+  A   + +   +I 
Sbjct: 120 AFDEG-----------GQRFFANIANSVRGLSGDIVLILIYVAFLFTAQSMWTQKLDNIF 168

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            + D           ++I       I       T+I+    L+   +    GV + + L 
Sbjct: 169 PEADR------REMVRRIGNDARLAIEKYLWTQTVISALITLLSYISLLALGVQNALFLS 222

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKG--------------NIFNATCLFLWGAIELFI 291
            +  ++  IP    I    V     +                +   A  +F   +   F 
Sbjct: 223 AVIFVLNYIPTVGSIVAALVPPLFALVQPVIPGWVPALALDESYVYAVIVFAIVSFWQFS 282

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   ++P ++G  + L  L     L       G+ G+F+   L  L+ +++
Sbjct: 283 IGNFIQPRMMGDSLNLSALVVLLALAIWGVLWGIPGMFLSAPLTVLMMILF 333


>gi|224418441|ref|ZP_03656447.1| membrane protein- permease [Helicobacter canadensis MIT 98-5491]
 gi|313141972|ref|ZP_07804165.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131003|gb|EFR48620.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 354

 Score = 75.0 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/344 (13%), Positives = 112/344 (32%), Gaps = 14/344 (4%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
                 +  ++  L     F   +L A ++   +  I+   + K + +     ++  + +
Sbjct: 10  FFSAAFILTLIALLKLYSPFLMNILIAFLLFIATHSIFQVILKKIKSTFLTSLLMTLLLL 69

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           +  F+                 ++ +                         L  +     
Sbjct: 70  VLCFVPIFYVAINLASFAGNIDLASLQKFFTDMQVKILITGKDFLEYLPVALQQQINDLL 129

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S+  ++   +    +  + + ++       D    +IF+    ++    G    + +  
Sbjct: 130 LSVNSINWAEILKKALSVVAKISTNSAYFLSDAVFIVIFLFFFYYYGNALGRYCLEII-- 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
               +     K +   V  VI   F    +  + +G++ G         S +        
Sbjct: 188 ---PIEKQQIKTLYDEVSAVISVVFYSSIVSMVLQGVLFGILMAFYRYDSILLGVFYGFA 244

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRP--------FLV 301
             +   G  + +  V  Y L  GN+ NA  + L+  I +  + D  ++P         L+
Sbjct: 245 SLIPVVGGTLVWLPVVCYELYLGNVTNAIVIALYSIIIIATLADNGVKPFVIAFINRILI 304

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
             P+K+  +  FF ++ G+ + G  G+ +GP + AL   + +  
Sbjct: 305 ETPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITALFIAMLRIY 348


>gi|325570153|ref|ZP_08146053.1| integral membrane protein [Enterococcus casseliflavus ATCC 12755]
 gi|325156812|gb|EGC68984.1| integral membrane protein [Enterococcus casseliflavus ATCC 12755]
          Length = 310

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 95/321 (29%), Gaps = 18/321 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L    + RW ++F++   L+  +     +L   I  +  + +      K        ++
Sbjct: 7   FLQNLVLRRWTVLFMLAGILFLFRSMMTILLLTFIFTYLIYRLVLLLHRKSHLPIKLTSI 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +    ++ +  +         + +  +LV+ V    Q        +  +   +  SE   
Sbjct: 67  LTYSLIVFILYLVATNYVPIIIKQSVQLVNSVADFYQRTDSNNELIEYVLNLLQTSEYIQ 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K  S    +          N  +        F + F     +   +  +  F    G   
Sbjct: 127 KLQSGVLVVINYLY-----NFGELALTVLISFLLSFFFMIDNKKTVAFSRLFLQGRGAWF 181

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            + +  L                 +   +      +IA+    +   A  + G P  ++L
Sbjct: 182 FEDVYYL------------GAKFTRAFGNVIETQLVIALVNTAITVFALAVMGFPQLLSL 229

Query: 245 GVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++   +++IP    I     ++      G   +   + L       +    L P L+  
Sbjct: 230 ALMIFFLSLIPVAGVIISCIPLTFIAYSIGGFNDVIYILLIIVFVHALESYILNPRLMAN 289

Query: 304 PIKLPFLPTFFGLVGGVRTMG 324
             ++P   TF  L       G
Sbjct: 290 KTEIPMFYTFILLYLSEHLFG 310


>gi|154150909|ref|YP_001404527.1| hypothetical protein Mboo_1366 [Candidatus Methanoregula boonei
           6A8]
 gi|153999461|gb|ABS55884.1| protein of unknown function UPF0118 [Methanoregula boonei 6A8]
          Length = 348

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/335 (14%), Positives = 122/335 (36%), Gaps = 20/335 (5%)

Query: 26  FLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
                   V+ +  +     P++   +         ++  A    +   +    +     
Sbjct: 24  IFWPVLDMVVLSASLAVVLMPVHHRLMRSV---PAVVSAAALTIALFTLVAAAAYCTDLV 80

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + +   L++++                   G W +   T+  +   S+   +  F    G
Sbjct: 81  LRQNAGLINQI---------------FGTIGTWLANPATQPGAFGVSISKDTLLFWVAKG 125

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
                 + +      L      +   ++ F F   G ++  ++         +Y + ++ 
Sbjct: 126 NALFVNYWATITANILLIVFKGLVFFLSFFLFLLRGIALRDRIFRHLPVQVRSYCELLTP 185

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTA 264
           +    +   ++    IA    ++    ++L G  + +    + A   +IP     ++F  
Sbjct: 186 VTVDTLYVIYIVQFAIAALTFVISLPVFYLLGYGNILFYSFLAAFCELIPILGSSVAFII 245

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
           V  Y L  G++     + + G I +  + +  +RP LVG  +K+  +  F GL+GG+ T+
Sbjct: 246 VGAYSLALGDLRGLLIMVILGYIVVSALPEIYIRPVLVGRRVKINPVIMFVGLIGGLLTL 305

Query: 324 GLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           GL G  +GP+++ L+   ++      K +KE   +
Sbjct: 306 GLAGFVLGPLIIVLVMKSYRIWTDERKGSKEPQDA 340


>gi|126178857|ref|YP_001046822.1| hypothetical protein Memar_0907 [Methanoculleus marisnigri JR1]
 gi|125861651|gb|ABN56840.1| protein of unknown function UPF0118 [Methanoculleus marisnigri JR1]
          Length = 362

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/335 (11%), Positives = 107/335 (31%), Gaps = 23/335 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+    +  +++ +  +      +  ++I+    +P   +  S+          + T+ 
Sbjct: 13  TILLLTAVVFLIIGIQAIAYIITIIAVSMILAMIVYPAAKALQSR-GLPEGAAVGVVTII 71

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                ++    +F+     +  +             V   L        +          
Sbjct: 72  ACLAVLLMCYLVFFSFENLVSAIPLYQQELTARLSEVLAHLDRYGIDTGSFSP------- 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                        +  +     F S   +   D  L + F+ +   F   +   +  ++ 
Sbjct: 125 ------------SSVNLQGFAGFLSSSAISIADLLLYLFFIAVTTIFMLLEAPRMPGRIR 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +  +       +    + + +    +  T   +  G + G+  W+ GV + V  G++T 
Sbjct: 173 KVTGN--RPETVEAFSRMSRFLIDFVIVRTEANLVHGFLFGAFLWVMGVHAAVLWGILTF 230

Query: 250 IMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +++ IP    +     +I+    +  I+ A  +    AI   +V+  +          +P
Sbjct: 231 LLSYIPYIGLVVAALPAIFFAWLQFGIWGAVAVIAAVAILNALVENPIFAHFASRRFDIP 290

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            L     ++     +G+ G+     L  ++ +I++
Sbjct: 291 ALVVVLSVIFWGWALGIAGMIFAVPLTLIVLMIFQ 325


>gi|228985048|ref|ZP_04145216.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228774736|gb|EEM23134.1| UPF0118 membrane protein [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 339

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 106/325 (32%), Gaps = 19/325 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K   +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     +SI     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLSIIAYNVGGVMYVVYILMFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLL 326
                LP   TF  L+     +G+ 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIW 311


>gi|167755695|ref|ZP_02427822.1| hypothetical protein CLORAM_01210 [Clostridium ramosum DSM 1402]
 gi|167704634|gb|EDS19213.1| hypothetical protein CLORAM_01210 [Clostridium ramosum DSM 1402]
          Length = 339

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 117/330 (35%), Gaps = 16/330 (4%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            MI+ +I+++ Y L  +  P+  + +I     P+ +  I   +  + FL+    V    L
Sbjct: 12  LMIIIMIVIATYVLINWLIPLFFSCLIVLVLQPLLAKEIKLLKIENIFLSKCLIVFNYLL 71

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           FI  ++ +  + ++++  ++  +    ++   +      I              +    +
Sbjct: 72  FIGVIIAMIIFAVIQIYTVLELLPNYLENLYQLFSQNHYIIDA-----------TKYLDV 120

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                  +  +           F M        +IF++I   F   D   I + +     
Sbjct: 121 IYSGSMSIVESISTGFITGLIAFIMKIPSILFDLIFVVITSLFILLDYSRIERLVVK--- 177

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    I   + +V+ + F    II I     L   + + G+   + L  I AI   
Sbjct: 178 --RYEMVALIIDTIKEVLSNLFKAYFIIMIITFGELWLGFKIIGINHSIMLACIIAIFDF 235

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P           I +    N        L   + + I    L P L+   + +  + + 
Sbjct: 236 MPVLGLDMIMIPWIIISALTNKIYLAGALLVIYMIIVITKNILEPKLIAKNLGVTPVLSL 295

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            G+  G++ MG++GL I P L+ +I  I K
Sbjct: 296 VGMYLGMKVMGVIGLIIVPTLLMVIIQILK 325


>gi|126335091|ref|XP_001363838.1| PREDICTED: similar to likely ortholog of H. sapiens chromosome 9
           open reading frame 5 (C9orf5) [Monodelphis domestica]
          Length = 1098

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 85/251 (33%), Gaps = 15/251 (5%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF----- 156
           +      WL DI      +    +++    S+       +  N         +       
Sbjct: 664 NITRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 723

Query: 157 -GMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVI 211
            G   L++ LS++  +  LF+         +    + SL     P     I    V + I
Sbjct: 724 SGTALLNFVLSLVIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIVGQSVEEAI 783

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 784 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAIPAVLDLW 843

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 844 LTQGEGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 900

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 901 IGPILLCILVV 911


>gi|320170312|gb|EFW47211.1| hypothetical protein CAOG_05155 [Capsaspora owczarzaki ATCC 30864]
          Length = 1229

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 80/266 (30%), Gaps = 3/266 (1%)

Query: 78   LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
            +  L           ++   L       +        G         + +S   S     
Sbjct: 902  ISTLILAVAEGNFASLADKQLYASAWSELSLGFQRFLGNDVDPTTVLQGVSTSASALGSG 961

Query: 138  ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                    +      A       +++ +S +  + +L++       +   L +    L  
Sbjct: 962  FARSVLLTLTSSYNIALSVVSFMVNFGVSFVIFLSSLYYLLIAEHDVISALFNKLVMLDQ 1021

Query: 198  AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             +   +S  +   +   F      A    +    ++ + G+       ++ A  A++P  
Sbjct: 1022 HWKTNVSTRLSTSVTQVFSASLKTAAFHAIFTWLSFSVLGLDLVYISSLLAAFFALVPFV 1081

Query: 258  APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                 + +    L+  +        ++      IV   + P ++          T   ++
Sbjct: 1082 PSYLVSLIGFVQLLFDDY---FWTGVFLVGAHLIVSWVVDPEILTEIKHAHPYITGLSIL 1138

Query: 318  GGVRTMGLLGLFIGPVLMALIAVIWK 343
             G+    L G+ IGP+L+ ++ +I +
Sbjct: 1139 LGLYAFDLPGVVIGPLLVCVVQLIAR 1164


>gi|52549442|gb|AAU83291.1| Htr-like protein [uncultured archaeon GZfos27E6]
          Length = 367

 Score = 75.0 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/352 (16%), Positives = 116/352 (32%), Gaps = 15/352 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +   + + +  I +  Y L  F   ++  + I + + P+YS F  + +   +  A I+ 
Sbjct: 9   NKLYWQILGLISIALLAYMLFPFLDVLIYGIFIYYVARPMYSKFDRRVK-HKSVGAFISL 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
             V+   ++  +F      +E+   +S+V     H   V     +  G     +      
Sbjct: 68  FFVVLPIVLISIFTLSIAYIELSTFLSQVD--FGHMGYVNELFKNFEGIAANIKQGDIST 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              Q    +      T   D   +F      +FL + ++   +  A         +    
Sbjct: 126 LISQGDTWVLILTQITKFSDIFFKFIDVLFRLFLTFAIAFYLLTDATKLREWITDTFLGG 185

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L +  F      I  +    I +  L   I A+   L+   A     +P  + + ++
Sbjct: 186 KPELTKKFFDEVDSDIHTVYFGNILTAVLTALIAAVIFWLLNLVAPPQLLIPYPILMAIL 245

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL----------FIVDKTLR 297
             +   IP              L+     N      W  I L          F  D  LR
Sbjct: 246 CGLGIFIPLVGMKLVWVPLAIYLVIQAYLNGILFTDWWFILLFLVVVFVVVDFAPDIALR 305

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
           P++ G  +        F  + G+   G +GLF+GP+++ +     K  +  +
Sbjct: 306 PYISGKHV--HAGTMLFAYIFGIAVFGFVGLFLGPMILIIATNFMKIVLPEL 355


>gi|326693483|ref|ZP_08230488.1| permease [Leuconostoc argentinum KCTC 3773]
          Length = 332

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 106/341 (31%), Gaps = 27/341 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +   R+ ++  I+V ++ L+ F + +L   I  + +           + S      +  
Sbjct: 9   NRRFYRYFVLLAIVVLIFLLRQFMSLLLLTTIFSYLALNAGKRVQRIFKLSRGVAISLVY 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  +   I  +       + ++K ++                       + A++   +  
Sbjct: 69  IVFVGFLIWAIDHGANTLIHQVKSMI-----------------------VLATDPSWRSH 105

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              + +      +  +   + I   A             +I  ++  F F      +   
Sbjct: 106 GILKEVYKNFHQYTNSFSTEQILTKALSQINQLGHIIYELILALLFSFIFCITYPQLRNW 165

Query: 188 LDSLGEHLFPAYWKK---ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
                   +  ++ +   I      ++   F    +I +     + +       P  +  
Sbjct: 166 SLHFLHSPYKKFFGEFYIILHRFIIILGRLFEVQLLICVINTAAMVAVLAFLQFPYLLGF 225

Query: 245 GVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++  I+ +IP    +     ++I   I GN      + +  A+  F+    L P  +  
Sbjct: 226 TIMIFILGLIPVVGVLVSLVPLTITAFIIGNWHTVLVILIAVAVIHFLESYFLHPHFMSH 285

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +P L     L+   +  G+ GL IG  ++  +   +K 
Sbjct: 286 RTHMPILVILLNLIIMEKLFGVWGLVIGLPILTFLLDFFKI 326


>gi|319956009|ref|YP_004167272.1| hypothetical protein Nitsa_0251 [Nitratifractor salsuginis DSM
           16511]
 gi|319418413|gb|ADV45523.1| protein of unknown function UPF0118 [Nitratifractor salsuginis DSM
           16511]
          Length = 342

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/359 (10%), Positives = 106/359 (29%), Gaps = 26/359 (7%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M      +  +    +  +      F   ++ A+++   +  +          S     +
Sbjct: 1   MDRRTLFVLILFSIALWGAYSIYAPFLLSMVVAVLLAMATSNLTRYLTRTLR-SRKIATL 59

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  + +  L + P++++   G+  +  L  + +                        L  
Sbjct: 60  VMVLLLFLLILAPIIYIATTGVEYLTHLDQQTIREIFAKARSLTENIPYVNHWAEEYLQV 119

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +        L  T + + G+ F+                              +    
Sbjct: 120 DKVIPYLKGISLYITKMGSKGLGFVKDTVMVIAFYAAAV---------------YNQDRF 164

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
              L +L         +++   +   +      + + A+ EG + G      G    +  
Sbjct: 165 IATLVALIPAPQRES-REMVAEIASTMEVVIYSIIVTAVFEGFLFGIFVSYFGFDGLLFG 223

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF----- 299
            +      +   G  + +  +S+Y   +     A  + ++  + + I+  T         
Sbjct: 224 AIYGFASLVPVVGGALVWVPLSLYAWSELGPQPALAIAIYSVVMISIIADTFIKPIIIKM 283

Query: 300 ----LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
               L+   I++  L  FF ++ G+ T G  G+ +GP +   +    +  ++     +E
Sbjct: 284 IKEQLLHVQIRINELVIFFSIIAGMSTYGFWGMILGPAITTFLFAATRIYLVYSSALEE 342


>gi|150395562|ref|YP_001326029.1| hypothetical protein Smed_0336 [Sinorhizobium medicae WSM419]
 gi|150027077|gb|ABR59194.1| protein of unknown function UPF0118 [Sinorhizobium medicae WSM419]
          Length = 376

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/341 (9%), Positives = 104/341 (30%), Gaps = 17/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +      +Y ++    P+  A+++G           ++      F  ++  +  +   
Sbjct: 48  LFVIACAAVVYAMEPILLPITLAVVVGIVLGRAADEL-ARFGLPPIFGGLLLALFFLLGL 106

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  + +      +E    V    +  +P  +              W   +    + +
Sbjct: 107 SYLVNAILWPITEVAREAPRLVEGVIERILPYLQRF-----------EWLNLVLARGTEE 155

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  N    I   A+      +   + +  +++ L    +   +I   + +    
Sbjct: 156 EAFADVIVKNAGPLIGGAAASLTPALVQTLIFLAALVLFLLGRVQLRSTI---ILAFPSR 212

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++   +   +   F   ++I +  G V      + G+      G+   + + I
Sbjct: 213 EGRLTAIRVMNALEDALGHYFSTASLIYLALGAVTMVVALVGGLAMPPLWGLFAFVSSFI 272

Query: 255 PGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P       T   +   L+    +  A             ++  L P ++G    +     
Sbjct: 273 PYLGVTFMTLALLVGGLMTHDALIVALAPATAFFFVHLAMENLLVPAILGQRFDINPFLI 332

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F  ++      G +G  +   L  +  +I+++ ++  +E +
Sbjct: 333 FVAIIFWTWMWGAVGAILAFPLSLIAMIIFEQVLLPPQERQ 373


>gi|300717354|ref|YP_003742157.1| hypothetical protein EbC_27790 [Erwinia billingiae Eb661]
 gi|299063190|emb|CAX60310.1| putative membrane protein [Erwinia billingiae Eb661]
          Length = 336

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/335 (12%), Positives = 106/335 (31%), Gaps = 23/335 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +G+     + ++L+ L+        VL AL +     P+ S    ++      ++ +  +
Sbjct: 14  RGLFLLACLTLVLIGLHLAAPLINQVLLALFLAIMLDPLISRLEKRRVPR--IISSLLVI 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L IV ++        ++ +L  ++       +     L    G ++  E     + 
Sbjct: 72  MILLLLIVIIIMSLSAATPDLLQLSRQMPALVAERLQTLAHLPGQMGIVFTYEEMLNLID 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                               I RF +    +        + + + L F   +       L
Sbjct: 132 -----------------GSAIVRFIATQLSLIPGMLSWWLMVFLMLLFMLYELPMFKTFL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +       +          + +       T+  +  GL++ +A  L G+      G++ 
Sbjct: 175 RA---KERHSRLFTALEEGIQSVIVYAQVKTLTGLLGGLIVWAAAHLLGLKLAFLWGLLM 231

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I   +P     ++     + + I  +   +     +  +    +   L P ++G  + L
Sbjct: 232 FIFNYVPVLGSFLAAIPPVVQIFILSDTQTSLLTVGFFVVLNLFLSSVLEPLMLGRRLNL 291

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                    +     +G+ G  +   L  L+  +W
Sbjct: 292 SLTVQLLSFLFWQSLLGITGAILAIPLTFLLTRVW 326


>gi|41614957|ref|NP_963455.1| hypothetical protein NEQ162 [Nanoarchaeum equitans Kin4-M]
 gi|40068681|gb|AAR39016.1| NEQ162 [Nanoarchaeum equitans Kin4-M]
          Length = 327

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/332 (13%), Positives = 117/332 (35%), Gaps = 32/332 (9%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  ++  ++++  + L  F   + +  +I +  WP+Y              A+   + + 
Sbjct: 4   ILILLAVVLIIVFFILLPFIPYIATGAVIAYFLWPLYKRLSK--FVPKRIAALGLIIVLG 61

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +      +      +E+ + +  ++                                  
Sbjct: 62  LIIGATTYYSSLVLYVELSKYLPTIIKQYSS----------------------------N 93

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            +       +       I  +A+    +  D  L I   +++ ++F  DG      + + 
Sbjct: 94  QMVGKYLPIVLQKLYPTILDYATSLIKLLPDMFLGIFIAMLSAYYFLLDGQKAIDYIINW 153

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                     +I       + +  +G    A+ + +V    + +  +   + L ++  I+
Sbjct: 154 I-AESKEDRNQIINTTKSYLDAVIIGTIFGALAQAVVSYIGFLILNIKLALVLSILVFIV 212

Query: 252 AMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           A++P   P + +  +++Y  ++ NI       ++G   + ++D  +R F V     +  L
Sbjct: 213 AILPIVGPSMIWVLLALYYFMQNNISFTIFSLVYGLFVVGLIDNIVRMFTVSSKADIHPL 272

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                ++GG   MG  GLF+GPVL+ L   + 
Sbjct: 273 LAALSMIGGSILMGFAGLFLGPVLVGLALSLI 304


>gi|229051108|ref|ZP_04194654.1| hypothetical protein bcere0027_50600 [Bacillus cereus AH676]
 gi|229153599|ref|ZP_04281777.1| hypothetical protein bcere0011_51290 [Bacillus cereus m1550]
 gi|228630203|gb|EEK86854.1| hypothetical protein bcere0011_51290 [Bacillus cereus m1550]
 gi|228722237|gb|EEL73636.1| hypothetical protein bcere0027_50600 [Bacillus cereus AH676]
          Length = 303

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 88/307 (28%), Gaps = 19/307 (6%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           I          +   +     V ++    + L        +++ +L+ +  +  ++    
Sbjct: 8   ISRKLDHFMPINRKIIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD- 66

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                        + +    LS      +       TN   F  +      +        
Sbjct: 67  -----SELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEK 121

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              +     F          ++            +   +   +          +IA+   
Sbjct: 122 SRIVGFTAKFKESRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNC 169

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWG 285
           ++   A W+ G P  + L ++  ++ +IP    I     + +     G I     + +  
Sbjct: 170 VLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIV 229

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   +    L P  +     LP   TF  L+     +G+ GL IG  +   +  +   +
Sbjct: 230 TVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVT 289

Query: 346 IMAIKEN 352
              ++++
Sbjct: 290 SDEMEKD 296


>gi|124002111|ref|ZP_01686965.1| conserved putative permease protein [Microscilla marina ATCC 23134]
 gi|123992577|gb|EAY31922.1| conserved putative permease protein [Microscilla marina ATCC 23134]
          Length = 396

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/362 (13%), Positives = 113/362 (31%), Gaps = 15/362 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           +L+   +    I+ + +V  +        +L +LII     PI     S +         
Sbjct: 3   LLHRATLNLLFIVLVAIVIGWVFSDIVIYLLISLIISSILRPITDYVTSVEVFRLKIPRS 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           IA V    L I             + + ++ +   +   +             +  + + 
Sbjct: 63  IAIVFSFALLITLSSLFLLLFAPIISDQINLLSNLDYQSLLDQIQKPIASVESFLIKNFQ 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +      L+ +++  L       +    +          L I+ +    FFF  +   I
Sbjct: 123 VNKKPGFLLQDITQNLLNFVEGINVGAILNYILGFAGTLFLYILAVSFITFFFLYEKGLI 182

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHV 242
              L +   + +          + + + S  +G+ I  I    ++     +AGV     +
Sbjct: 183 RHTLLAAIPNHYFEVVVTTIYKIERRLTSYLVGLLIQIIVIFTIISVGLTIAGVAGRYAL 242

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI-------------FNATCLFLWGAIEL 289
            +    A+  +IP   P      +++++I                 +     F   A   
Sbjct: 243 LIAAAAALFNLIPYFGPTLGFIFALFVIISTTTLNSVFEVTSNEYAWITLKTFTVFASAQ 302

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
              +  L+PF+    +K   L  F  +  G    G LG+     +  ++ V + E  +  
Sbjct: 303 LTDNIFLQPFIFSKSVKAHPLEIFIAIFAGAALSGGLGMIAAIPVYTILRVSFIELRLGY 362

Query: 350 KE 351
            +
Sbjct: 363 TQ 364


>gi|138896105|ref|YP_001126558.1| hypothetical protein GTNG_2468 [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267618|gb|ABO67813.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 262

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 84/258 (32%), Gaps = 2/258 (0%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L  K+         V   L        +S       S  +S+  + +  L  +    + +
Sbjct: 3   LSQKLPYVFSEATKVLDELIQTWQSYSSSIPQEIIDSLERSVNTVQQMLL--SFATNLTQ 60

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
               +      + +  +  ++ALF    D   + Q +              +   + K  
Sbjct: 61  SLVHYIAAIPAFFIHFLVYLVALFLICLDLPQLKQGIRRYLSERTHQRLSMVVSQLSKAG 120

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                   + ++    +  +   + GV     +  I  ++ ++P     S       + I
Sbjct: 121 VGFIKAQFLFSLVTFFLALAGLLILGVDYAALMAFIIVVVDILPILGTGSVLVPWGIISI 180

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                      +   + + +V + + P +    + +  L     +  G + +GLLG FIG
Sbjct: 181 INGSTALGIGLIVLFVIITVVRRIIEPKVFSTNLGISPLAALVSVYLGFQILGLLGAFIG 240

Query: 332 PVLMALIAVIWKESIMAI 349
           PV++ L+  + K  ++  
Sbjct: 241 PVIVILVETLVKAGVIKW 258


>gi|313681479|ref|YP_004059217.1| hypothetical protein Sulku_0350 [Sulfuricurvum kujiense DSM 16994]
 gi|313154339|gb|ADR33017.1| protein of unknown function UPF0118 [Sulfuricurvum kujiense DSM
           16994]
          Length = 355

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 114/348 (32%), Gaps = 14/348 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +     +RWM   I ++ L+    F      AL++     P+Y S  S+ +     ++V 
Sbjct: 1   MQQNNFLRWMSFGIFVLILWLFSPFLKSFFVALLLAMAVSPLYRSIKSRIDRYPALVSVA 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           + VS   + I   L +F    + + +++            +   +      +     W  
Sbjct: 61  SLVSASIVSIGLSLIIFLPIAIFLYQILDNPAKTLDMIRMIGNKIDSPYLNLPTFLQW-- 118

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            LS P    +      K   I F+  +       F      +  ++I  FF    G  + 
Sbjct: 119 -LSDPLYNLLTQIRNHKDEIIAFLAGWFGSGIKTFASMLGEMAMIVIFFFFLTWYGRRLL 177

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L  +   L  +  +     +  +    F  +  + I +GL  G         + + LG
Sbjct: 178 LFLLPII-PLPRSIKRDFLDEMTIMSAVVFYTLVGVMIAQGLAFGIFIAFFEGYNPLLLG 236

Query: 246 VITAIMAMIPGGAPISFTAVSIY----------LLIKGNIFNATCLFLWGAIELFIVDKT 295
            +T I A+IP                         I      A   F    I   ++   
Sbjct: 237 FLTGISAIIPVVGTALVWIPVAVHEYMSGNIVNAFIISLYSWAMMAFFIDNIVKLVILNF 296

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +   L  G  ++     FF +VGG+ T G  G  +GP ++A      +
Sbjct: 297 VNRSLSIGKRRINEFVIFFAIVGGLATFGFWGFILGPAIVAFAMTTLR 344


>gi|220906022|ref|YP_002481333.1| hypothetical protein Cyan7425_0581 [Cyanothece sp. PCC 7425]
 gi|219862633|gb|ACL42972.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7425]
          Length = 357

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 81/299 (27%), Gaps = 12/299 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
             L+ ++     V  A+++      I      +          +  +  + L     L +
Sbjct: 17  YILWQIRQVVLLVFLAVVLAMAMHRIQLQMQ-RAGLKRGTALSLTILLTLSLIAGFFLLI 75

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                 E  +L   V  +          L     G                  +   T  
Sbjct: 76  VPPFFRESAQLAELVPQSLDRLQKWFLELQQQLPG-----------EVGDFRLLDQLTQQ 124

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  I +    F    +   ++++ +++       +     Q    L    +     
Sbjct: 125 LQPLVGSISQNFFAFFSNTVGLLINLLLVLVLTVMLLVNPLPYRQGFVRLFPAFYRRRVD 184

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            I       +     G  I  +  G V G    L GV   +A  ++  ++  IP   P+ 
Sbjct: 185 AILSRCELALVGWLTGTLINMVVIGSVSGVVLLLLGVRLVLANALLAGVLEAIPNIGPVL 244

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                + + +  + + A  + +   +   +    L P ++   + L    T    V   
Sbjct: 245 SVLPPMAIALLDSPWKALAVLIAYILIQQLEQYLLVPTVMARQVDLLPAVTLLSQVVFA 303


>gi|76801133|ref|YP_326141.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76556998|emb|CAI48572.1| homolog to predicted permease [Natronomonas pharaonis DSM 2160]
          Length = 331

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/339 (13%), Positives = 120/339 (35%), Gaps = 25/339 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            ++ + + ++  ++  I +++   L      V  A+ + +  +P     +++        
Sbjct: 2   SSLRHRRYVLGGLLAAIGVLAAAVLWNVVGTVFFAVTVAYVLYPARQRLVNRGVPRR-VA 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           + + T +     +V L  + +    +   ++  +                          
Sbjct: 61  SGLLTAAAFLTVVVLLAPIAWTIFRQRGAILEFLNNLPDELP------------------ 102

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +     +  +    L     D +   A       +   L ++   + L+       
Sbjct: 103 ----VEAFGFVVTIDVADLVDTTADTLQSIAISLAADAIFLALQLLMFALVLYGLLLRPN 158

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           ++ +    +    +      + R +   + + ++     A+    +    ++L G P   
Sbjct: 159 AVGRAAFRVTPSPYHDILVALHRRIAGTLYALYVIQAATAVITFPLALIVFYLLGYPDVF 218

Query: 243 ALGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWG-AIELFIVDKTLRPFL 300
            L V+ A++  IP   P +    ++ + ++ G    A  + + G      + D  +RP L
Sbjct: 219 VLAVLAALLQFIPIVGPGMLAAGLAGHDVLVGMPHRAVGVIILGPLFVGLLPDLLVRPRL 278

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                KLP    F G VGGV T+G++G+  GP+++AL+ 
Sbjct: 279 AASKAKLPASLYFVGFVGGVLTVGVIGIIAGPLVVALLV 317


>gi|87302776|ref|ZP_01085587.1| hypothetical protein WH5701_13525 [Synechococcus sp. WH 5701]
 gi|87282659|gb|EAQ74617.1| hypothetical protein WH5701_13525 [Synechococcus sp. WH 5701]
          Length = 333

 Score = 74.6 bits (182), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 88/300 (29%), Gaps = 17/300 (5%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +     +  A+++        S    +   +      +  V+++ +     + L    + 
Sbjct: 23  RWVLLVLFGAVVLAVALDVPVSLLRRRLPLNRPSAVALVIVALVLVGWKVSVLLLPEVLQ 82

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
           +  +    + +  Q    +                        +S +         + + 
Sbjct: 83  QANQFTQLLPVLLQRLGDL-----------------AGGSMAFRSFEERLLELATWDKLQ 125

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            +               + I+ M++       D     + + +     +    + + R  
Sbjct: 126 PLGTQLLGVAGGAASSTIQILLMVLLAILLALDPRPHQRLVLAATPQFWRPSMQSLLREA 185

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            + +     GMTI A+   L+  +   L  VP  +  G++  ++  +P   P   TA+ +
Sbjct: 186 REALGGWLAGMTISAVTVFLLTWAGLALLKVPLALLSGLVCGLLTFVPTIGPTVATALPL 245

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            + +  +      + +   +        L P L+   + L         +     +GL G
Sbjct: 246 AVALLISPAKVAQVLVLRLMLQNAEAFVLTPLLLSRTVNLLPTVALMAQLSLGALLGLPG 305


>gi|116490410|ref|YP_809954.1| permease [Oenococcus oeni PSU-1]
 gi|116091135|gb|ABJ56289.1| Predicted permease [Oenococcus oeni PSU-1]
          Length = 347

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 103/339 (30%), Gaps = 17/339 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  +    ++ +  +++ +Y L+ F   +L   I  + +      F  + +       +
Sbjct: 7   FLKRKDAQLYLTLIFLIIVIYTLRNFIGVILLTTIFSYLAIKASLFFKKQFKVPYLLAVI 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V  + LFI  + +     + ++K + + +  A      + + +  +      S    
Sbjct: 67  LMYVFGLGLFISAITYAAPLLVEQLKVIPNMISKAIVDHPYLNKNIDKLINQAIHSSEIV 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +     +     + T     +      F        L                   
Sbjct: 127 SSSKNVLITGLREAGHVGTGFTHVVLAIFLSFVYSTSHNRLL----------------KF 170

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +        F      ++R    ++        +I     L++     L  +PS + L
Sbjct: 171 GHEFLKSPYREFFKNIYYLARKFVLILGKIIETQLLICSINTLLMAIGLSLLKMPSLLLL 230

Query: 245 GVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +I  I  ++P     IS   + +     G +     + +   +        L P L+ G
Sbjct: 231 TIIIFIFGLVPVAGVLISIIPLGLIAFASGGLIRVAEVIVLVVVIHLFESYFLHPRLMAG 290

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP    F  L+     +G  GL +G  +++    I 
Sbjct: 291 RTDLPVFVAFITLIIMSELLGGWGLIVGLPIVSFFLDIL 329


>gi|298710977|emb|CBJ32284.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 466

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/387 (11%), Positives = 110/387 (28%), Gaps = 57/387 (14%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK------------ 54
           + + +  WM+  ++   L  L+ F+  +L   ++ +         + K            
Sbjct: 60  DTKKLGAWMLFALV---LSRLRYFYGVMLGTFVMSYMGNSAIEVCMRKGNNLLKRAGERL 116

Query: 55  ------KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPR 108
                 K+   +  A +  + +M +     + +     +E + LV K+   +     +  
Sbjct: 117 GWKRLPKKLPRSGYASVYILLLMTVITSLTVIIAPRLTVESQILVQKLSEQDNPYAIIAS 176

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA--------------- 153
           W+    G    + L    LS       +   +  ++ +    +                 
Sbjct: 177 WMRSNFGEEALARLEPFLLSVTGDQGRIFAGYPDSSLVTIASKLQDKAAWGEQRYARFAK 236

Query: 154 -----------------SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                            S             +  ++  F    D  ++ + + +L     
Sbjct: 237 LLQFCLSDYFKKGLNMCSTVVGDLTKVLYKAMVSLLFSFMVIWDLPNLRRGVTALKTSRL 296

Query: 197 PAYWKKISRIVPKVIRSTFLG---MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
              +  IS  V    +           IA+   ++  +     GV   + L  I  + + 
Sbjct: 297 SFAYNTISPQVSIFAKLVGQSFEVQFTIAVINTILTTAGLIALGVSGPLVLSFIVFLCSF 356

Query: 254 IPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +P     IS   +++  L    +     + L       +    L P +    +KL  +  
Sbjct: 357 VPVVGVFISTLPMAVAALGDYGMSKVFQILLMIFGVHAVEAYFLNPQIYASKLKLHPVVV 416

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L      +G+ GL +       + 
Sbjct: 417 IGVLYVAEHLVGVQGLIMAVPCAVFVI 443


>gi|217077818|ref|YP_002335536.1| membrane protein [Thermosipho africanus TCF52B]
 gi|217037673|gb|ACJ76195.1| membrane protein [Thermosipho africanus TCF52B]
          Length = 327

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 99/339 (29%), Gaps = 28/339 (8%)

Query: 12  MRWMIMFIILVSLYFLKGF-FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
              +I FI+ + L     F F  V+                  K   +     VI+   +
Sbjct: 5   FLILIYFILFLILIKFSPFVFGAVIIGFYFSIVIDVPAKLLSKKL--NKNLSKVISYTLM 62

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L     +      + E K++ S++   + +G P               ++    L+  
Sbjct: 63  LSLIFYSFITFIPVILEEGKKIFSELSKISINGNPQLPSWILDFLNNSNKQISNFALNVL 122

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             L   + + +    +  +   A      +L   L   F+                    
Sbjct: 123 NQLFSYTPSIITMGILIIVTTLAVSNLKAYLKKNLKSFFVY------------------- 163

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
                 P       R   K       G  ++A+  G+ +G   ++ G+   + LG+++ I
Sbjct: 164 -----NPEKGYNFFRSFYKDFERFVSGQVLVALFVGISVGFLCFVFGIKGALFLGILSFI 218

Query: 251 MAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
              IP    I  +   + L              +   I   +      P +    +K+ +
Sbjct: 219 TDFIPFLGVIIVSIPMLMLGWTSKGFTGIVLGIIILVIVNQLESWFFAPKIQSSNLKIHW 278

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
                 L+      G +G+ I    +  I   WK  I+ 
Sbjct: 279 FVLIISLLIFNDFFGFIGILIAIPTILFIKKFWKYYILG 317


>gi|313634627|gb|EFS01099.1| YubA [Listeria seeligeri FSL N1-067]
          Length = 160

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 59/138 (42%)

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
              G  I+++  G++L   Y + G+P  + L +I A  +++P   P      +I + I  
Sbjct: 1   YIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACTSIVPYLGPAIAITPAIIIAIVT 60

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           + +    L +   +   +  K + P ++G  +K+  +   F ++      G+LG+     
Sbjct: 61  SPWLLVKLVIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILIAGNLFGVLGVIFAVP 120

Query: 334 LMALIAVIWKESIMAIKE 351
             A++ VI     +  K 
Sbjct: 121 GYAVLKVIVTHVFIWFKR 138


>gi|169351127|ref|ZP_02868065.1| hypothetical protein CLOSPI_01906 [Clostridium spiroforme DSM 1552]
 gi|169292189|gb|EDS74322.1| hypothetical protein CLOSPI_01906 [Clostridium spiroforme DSM 1552]
          Length = 338

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 111/321 (34%), Gaps = 16/321 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +   MI+F+++++ Y L  +  P+  + +I     P+ +  I+  +  +  LA    +
Sbjct: 7   KYLYWLMILFVLVITTYVLVNWLIPLFFSCLIVLILQPLLTREINLLKIKNNLLAKAVII 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               LFIV ++ L  + ++++  ++  +    Q               M+++  +   +S
Sbjct: 67  FNYGLFIVLVISLIIFCIIQIYNILEILPAYLQKL-----------YVMFSNNSYIIDIS 115

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       +  N             M        ++F+++   F   D   I + L
Sbjct: 116 KYLDFIYSGSMSIIENVSSSFIHGLIMIIMKIPSIMFDMVFIVMTSLFMLLDYQRIDKLL 175

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 +       +      V  + F    II +     L   + +  +   V L  I 
Sbjct: 176 IRKYPMV-----SLVVDTTKDVFSNMFKAYFIIMVVTFFELWIGFLIMKLEHSVVLSCII 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           AI   +P           I +    N  +     L   + + I    L P L+   + + 
Sbjct: 231 AIFDFLPVFGIDMIMIPWIVICAFTNKISLALGLLIIYLVIVITKNILEPKLIAKGLGIS 290

Query: 309 FLPTFFGLVGGVRTMGLLGLF 329
            L +  G+  G++ +G +GL 
Sbjct: 291 PLVSLIGMYLGMKILGFIGLI 311


>gi|222831870|gb|EEE70347.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 68/196 (34%), Gaps = 1/196 (0%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            +F SRF + F +   +I  + + + F   +  ++ Q+   L         +     + +
Sbjct: 1   MKFVSRFLLSFSNVVTNIFVLFLIVVFMLAEAPTVKQKFTKLIVTENTVTQQNYIERILQ 60

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +       TI ++  GL +     +  +   +    +  ++  IP    I      I  
Sbjct: 61  GVIGYLGVKTITSVMTGLCIYFVLSVLDIQYAILWATLVFLLNYIPNIGSIIAAVPVIVQ 120

Query: 270 -LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             +         + +   +   +V   L P ++G  + L  L  F  L+     +G +G+
Sbjct: 121 SFLLNGFITGLVVSIAFILINTVVGNVLEPKMMGRKLGLSTLIVFLSLLFWGWLLGTVGM 180

Query: 329 FIGPVLMALIAVIWKE 344
            +   L   + +  + 
Sbjct: 181 LLSVPLTMGLKIALEA 196


>gi|47568322|ref|ZP_00239024.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
 gi|47555015|gb|EAL13364.1| hypothetical protein membrane Spanning protein [Bacillus cereus
           G9241]
          Length = 337

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/325 (14%), Positives = 106/325 (32%), Gaps = 19/325 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +     +G  R++++ I+ + LY LK     +L   I+ F           K   +   +
Sbjct: 5   KNFFRSRGFQRFLVLIILALVLYGLKSMINLILITFILTFLMDRFQRFISKKLNVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                + ++      L        +++ +L+ +  L  Q+                    
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD----------------- 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                    ++  +  +     G+D I +  +  G + L   LS+I  +  L    R   
Sbjct: 108 NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQILLSLILSLFFLLEKERIIT 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             S+  +S  +  +            +          +IA+   ++   A  + G P  +
Sbjct: 168 FTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAVVNCILTVIALIVLGFPQLL 226

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP    I     +SI     G +     + ++  +   +    L P  +
Sbjct: 227 VLAVMIFLLGLIPVAGVIISLFPLSIIAYNVGGVMYVVYILMFITVIHALESYFLNPKFM 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLL 326
                LP   TF  L+     +G+ 
Sbjct: 287 SAKTNLPIFYTFMILIFSEHFLGIW 311


>gi|301300495|ref|ZP_07206693.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851895|gb|EFK79581.1| putative membrane protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 280

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 92/290 (31%), Gaps = 23/290 (7%)

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + ++    + +       + + + LV+ +V    H       + ++     +     K +
Sbjct: 1   MLMIGGIYLAITIYLPKLVTQTENLVNYIVKFYNHPPKGTNDVINMVTQYISQSDIMKQM 60

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               S+ +     + T G+ FI      F                   FF  D   + + 
Sbjct: 61  RGGMSIIVKYLANIGTMGMTFIMALLLSF-------------------FFTIDKDDLFKF 101

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLG---MTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             S  +  +  ++  +       + S  +      IIA+    +  +      +P   +L
Sbjct: 102 SKSFLKGPYSWFFNDVYYFAKIFVNSFGVVLETQFIIALINTAITTTILACMKMPQLFSL 161

Query: 245 GVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            ++   M+MIP    I     + +     G +     + +   +   +    L P L+  
Sbjct: 162 ALLIFFMSMIPVAGVIISAIPMMLIGYTVGGVRYIIYIIIMLCVVHALEAYVLNPKLMSS 221

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             +LP   TF  L       G+ GL +G  +   +  I       I+  +
Sbjct: 222 RTELPIFYTFVVLYVSEHLFGMWGLIVGIPVFTFLLDILGVKSDHIRRER 271


>gi|257388256|ref|YP_003178029.1| hypothetical protein Hmuk_2209 [Halomicrobium mukohataei DSM 12286]
 gi|257170563|gb|ACV48322.1| protein of unknown function UPF0118 [Halomicrobium mukohataei DSM
           12286]
          Length = 393

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/354 (12%), Positives = 118/354 (33%), Gaps = 13/354 (3%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P+     +   +    ++    F    +  L + + +       + ++ E  +  A ++ 
Sbjct: 11  PRTAWVALGFVLAAALVFVAYRFVGTFVFGLFVYYATR-RLYRRVRRRIEQPSVAAGVSL 69

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V ++   ++ L +     + ++     ++      G  +   L+     +  + L     
Sbjct: 70  VGMVLPALLLLAYTLGIALQQLSRFADEI-DGAGSGSQIEDLLAMADPYLNLTVLSDPTA 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  + + T    + + ++    +    +F+   L+   +     F    G   ++ 
Sbjct: 129 LLDNLGGVGTITTTLESALGYLGVVGTGLLHLFVMLALAFYLLRDDRRFAGWAGHLTAE- 187

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
             ++ E    A  +   ++    I +  +   +  I   L+   A     +P    +GV+
Sbjct: 188 -RTVFEEFVAAVDESFDKVFYGNILNAMITGLVGGIVYTLLNQIAPASVAIPYAALVGVL 246

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIK-------GNIFNATCLFLWGAIELFIVDKTLRPFL 300
               ++IP              L         G  F      +   +   I D  +RP++
Sbjct: 247 AGGASLIPIVGMKLVYVPMAAYLAVLAGTSGEGWWFVVAFAAVSFVVVDVIPDLLVRPYV 306

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
            GG  +L      F  + G    G  G+F+GP+++ L+    +  +  +  ++ 
Sbjct: 307 SGG--ELHTGALMFAYILGPLIWGWYGIFLGPIVLVLVTHFARIVLPELVTDEP 358


>gi|55379912|ref|YP_137762.1| hypothetical protein rrnAC3369 [Haloarcula marismortui ATCC 43049]
 gi|55232637|gb|AAV48056.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 368

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/366 (14%), Positives = 117/366 (31%), Gaps = 27/366 (7%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            M   + ++    + + +V       F A +  ++ + +++   Y+S   +    +   A
Sbjct: 2   YMDEKRFVVALFGLAVAVVVGVLAYQFIAALTVSVFLYYSTRRYYTSL-RRLRLPARVRA 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+   S+    ++ + +     ++E ++ V++  L +     V           W     
Sbjct: 61  VVVMASLAIPLLLLVSYAAVLLIIEARQFVTQYALVDVAATHV----------SWLDGAE 110

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +      + L    ++      +DF+   A     +   + L++    I  ++   DG  
Sbjct: 111 SVPDLTVEGLYSAYQSGQLKPFVDFLSENAMVLTSVASQFFLNLFITTIVTYYLLVDGRR 170

Query: 184 ISQQLDSL-----GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           I   L              A  +++  ++   + +      I           A     V
Sbjct: 171 IRGWLLRFDDGAIIREYLEAVDEELEAVLFGNLLNVLAISLIAIAAFTGYNVVAPAAVEV 230

Query: 239 PSHVALGVITAIMAMIPGGA------PISFTAVSIYLLIKGNIFNAT---CLFLWGAIEL 289
           P     G +T I ++IP         P++       +L   +   A     L +   +  
Sbjct: 231 PYPTLAGALTGIASLIPVVGMKIIYLPLTGITALPVVLDGQSSLLAYVLGFLLIAVVVVD 290

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I D  LRP L G                G   +G  GLF  P+L+ +       ++  +
Sbjct: 291 TIPDLLLRPLLSGEST--HVGLLMLAYTLGPVVLGFYGLFFAPILLVVGMTFANTALPRL 348

Query: 350 KENKEK 355
               E 
Sbjct: 349 LGASEP 354


>gi|78212726|ref|YP_381505.1| hypothetical protein Syncc9605_1195 [Synechococcus sp. CC9605]
 gi|78197185|gb|ABB34950.1| conserved hypothetical protein [Synechococcus sp. CC9605]
          Length = 329

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 71/279 (25%), Gaps = 21/279 (7%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +               ++    +    L    + + ++L   +         +    
Sbjct: 46  VQKRTPLKRPQALAAVLGILILTGGLLGQLLVPELINQFQQLGRDLPQLVSKVSDLLSNE 105

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +     A                                    F     +  + +  M
Sbjct: 106 PRLAQLNDAVGEGLNLNGLQP---------------------LLGFAGGAANSLVQLFLM 144

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++       D  +  + + ++         + +     + +     GMT+ +    L+  
Sbjct: 145 VLLAILLALDPNAHRRMVVAMTPRPAREQMEHLLDECRQALGGWLSGMTLSSTTVFLLTW 204

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
               L   P  +   ++  ++  +P   P + T +   L +  +      + ++  +   
Sbjct: 205 GGLMLIKAPLALLSALVCGLLTFVPTIGPTAATLLPAGLALLQSPQLMLSVLVFRLVLQN 264

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +    L P L+   + L         +     +GL G+ 
Sbjct: 265 LEAFLLTPLLLRKTVNLLPTVALTAQLSLGALLGLPGVL 303


>gi|317969774|ref|ZP_07971164.1| permease [Synechococcus sp. CB0205]
          Length = 351

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 102/312 (32%), Gaps = 5/312 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +     LV L+ L+     V +A+++      +      +   +      I+   ++
Sbjct: 7   LGLIATAAALVLLWSLREVLVLVFAAVVLAMAICTLVGVTQERLRCNRPLALFISLGGLL 66

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            + ++    +    + + +EL+ ++  A Q  + + R   D    M       + L    
Sbjct: 67  VVVVLTTAVVVPPFVAQFQELLRQLPAALQLAMQLLRRTLDQSSQMLYGREALQWLQKSW 126

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
            L   S +   T G   +   A   G   ++    +   ++                  L
Sbjct: 127 -LSQGSGSLDPTEGFLKLLGIAGNLGSGLVELLFVVAVSLMVAIQPQAYRE----IAILL 181

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +   ++ +  +  + + S   G+ I ++  G++      L GV    A  ++  ++
Sbjct: 182 VPSFYRRRFRDVLTLCGEGLSSWMAGVLISSLCVGVLAAIGLSLLGVKLVAANALLAGLL 241

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            +IP   P   T   + + +  +   A  + L   +   I    + P ++   +KL    
Sbjct: 242 NIIPNIGPTLSTVFPMSVALLDSPVKALLVLLLYVVIQHIESYLITPSVMHHQVKLLPGL 301

Query: 312 TFFGLVGGVRTM 323
           T           
Sbjct: 302 TLIAQFFFTVIF 313


>gi|290889818|ref|ZP_06552905.1| hypothetical protein AWRIB429_0295 [Oenococcus oeni AWRIB429]
 gi|290480428|gb|EFD89065.1| hypothetical protein AWRIB429_0295 [Oenococcus oeni AWRIB429]
          Length = 347

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/339 (12%), Positives = 104/339 (30%), Gaps = 17/339 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  +    ++ +  +++ +Y L+ F   +L   I  + +      F  + +       +
Sbjct: 7   FLKRKDAQLYLTLIFLIIVIYTLRNFIGVILLTTIFSYLAIKASLFFKKQFKVPYLLAVI 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V  + LFI  + +     + ++K + + +  A      + + +  +      S    
Sbjct: 67  LMYVFGLGLFISAITYAAPLLVEQLKVIPNMISKAIVDHPYLNKNIDKLINQAIHSSEIV 126

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
            +  +     +     + T     +      F        L                   
Sbjct: 127 SNSKNVLITGLREVGHVGTGFTHVVLAIFLSFVYSISHNRLL----------------KF 170

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
             +        F      ++R    ++        +I     L++     L  +PS + L
Sbjct: 171 GHEFLKSPYREFFKNIYYLARKFVLILGKIIETQLLICSINTLLMAIGLSLLKMPSLLLL 230

Query: 245 GVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            +I  I  ++P     IS   + +     G +     + +   +        L P L+ G
Sbjct: 231 TIIIFIFGLVPVAGVLISIIPLGLIAFASGGLIRVAEVTVLVVVIHLFESYFLHPRLMAG 290

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              LP    F  L+     +G  GL +G  +++    I 
Sbjct: 291 RTDLPVFVAFITLIIMSELLGGWGLIVGLPIVSFFLDIL 329


>gi|322371360|ref|ZP_08045911.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549058|gb|EFW90721.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 379

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 52/354 (14%), Positives = 112/354 (31%), Gaps = 23/354 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  ++  II    Y    +   V+  L + + + PI      + +      A ++ V 
Sbjct: 4   WVLGLIVFGIIAAVAYMFLPW---VVFGLFVYYVARPINRYLGRRIKGK-NLSAALSLVL 59

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   ++ L   F   + ++    +           V   L              K L  
Sbjct: 60  IVVPVVLFLGVFFSIAIGQLAAFAN---------TDVAARLLGGLPTTTIPNDPNKLLDT 110

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +             +       +    +     L   F+++      R G       D
Sbjct: 111 ATTTLQKPSVQSALAAVQAFVGGIASSIFMLFLSLLLGFFLLVEDERLARWGKEQLLGDD 170

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +      A    ++ I      + F+ M + A+   L    A     +P+ + L VIT 
Sbjct: 171 RVFTDYLEAVDAGLNSIYFGYTLTIFVIMILTAVIYNLFNLFAPGNLLIPATILLAVITG 230

Query: 250 IMAMIPGGA----PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT----LRPFLV 301
           I  ++P        ++  A      I+ +       F++        D      +RP+L 
Sbjct: 231 IFTLVPLVGRSVVYLAIAAFLALGAIQRDPNALWYPFVFFLFMTLAFDNVVRTYIRPYLS 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           G    L      F  + G    G  G+F+GP+LM ++    + ++  ++  +  
Sbjct: 291 GKLFHLS--LVMFAYLLGPILFGWYGVFLGPLLMVIVVQFLQVAVPQLRGKEPT 342


>gi|320450202|ref|YP_004202298.1| hypothetical protein TSC_c11290 [Thermus scotoductus SA-01]
 gi|320150371|gb|ADW21749.1| hypothetical protein TSC_c11290 [Thermus scotoductus SA-01]
          Length = 219

 Score = 73.5 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/161 (19%), Positives = 62/161 (38%), Gaps = 1/161 (0%)

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +     +L  + W ++     K +        +IA+   L+ G   ++ GVPS  ALG
Sbjct: 57  HLVARAAPYLPGSGWTEVLEDTWKRMGYWARAQFLIALSFALLFGGWLFVLGVPSPFALG 116

Query: 246 VITAIMAMIPGGAPI-SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+  ++ ++P    I + +  ++  L       A  +     +   +  K L P++ G  
Sbjct: 117 VLGGVLEVVPFVGGIATASLAALVALSAKGPLAALLVLAGYGVIALLEGKVLIPYIYGRT 176

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +          +    +  G LG+F+   +  L A I K  
Sbjct: 177 VGFHPALVLLAIFAFGKLFGFLGIFLAVPMTILGAGILKHW 217


>gi|300173317|ref|YP_003772483.1| integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
 gi|299887696|emb|CBL91664.1| Integral membrane protein [Leuconostoc gasicomitatum LMG 18811]
          Length = 332

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/336 (13%), Positives = 107/336 (31%), Gaps = 21/336 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            + R+ ++ +I+  + FLK F + +L  +I  + +        +  + S      +  + 
Sbjct: 11  QLYRYFVLAVIIALIVFLKQFMSLLLLTIIFSYLAINAGKRVSAVLKTSRAISIALVYIL 70

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ L ++ +       M ++K +++     +       + +         +    + +S 
Sbjct: 71  VITLIVLAINHGTTTVMHQVKSMMALATDTSWDTNGFLKEVYKNMHHYTNTLNTDQLISK 130

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S        L    +  +  F        L                     + S    
Sbjct: 131 GISHLNQVGHVLYELVLALLFSFIFSMTYPQL--------------------RAWSLHFL 170

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
               H F   +  I      ++   F    +I +    V+ +       P  +   ++  
Sbjct: 171 HSPYHKFFGEFYIIIHRFIIILGRLFEVQLMICVINTAVMVAVLAFLQFPYLLGFAILIF 230

Query: 250 IMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           I+ +IP    I     ++I   I GN      + +  A   F+    L P  +     +P
Sbjct: 231 ILGLIPVFGVIISLVPLTITAFIIGNWHTVLIILVAVACVHFLESYFLHPHFMSQRTHMP 290

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L     L+   +  G+ GL +G  ++  +   ++ 
Sbjct: 291 ILVILLNLIIMEKLFGVWGLVVGLPILTFLLDFFRI 326


>gi|228911276|ref|ZP_04075081.1| hypothetical protein bthur0013_54150 [Bacillus thuringiensis IBL
           200]
 gi|228968572|ref|ZP_04129558.1| hypothetical protein bthur0004_53450 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791113|gb|EEM38729.1| hypothetical protein bthur0004_53450 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228848452|gb|EEM93301.1| hypothetical protein bthur0013_54150 [Bacillus thuringiensis IBL
           200]
          Length = 300

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 88/307 (28%), Gaps = 19/307 (6%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           I          +   +     V ++    + L        +++ +L+ +  +  ++    
Sbjct: 8   ISRKLDHFMPINRKIIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD- 66

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                        + +    LS      +       TN   F  +      +        
Sbjct: 67  -----SELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEK 121

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              +     F          ++            +   +   +          +IA+   
Sbjct: 122 SRIVGFTAKFKESRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNC 169

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWG 285
           ++   A W+ G P  + L ++  ++ +IP    I     + +     G I     + +  
Sbjct: 170 VLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIV 229

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   +    L P  +     LP   TF  L+     +G+ GL IG  +   +  +   +
Sbjct: 230 TVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVT 289

Query: 346 IMAIKEN 352
              ++++
Sbjct: 290 SDEMEKD 296


>gi|294809934|ref|ZP_06768608.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442780|gb|EFG11573.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 176

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 1/159 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-P 259
           +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T    +IP     
Sbjct: 17  QEVIHEINMIVRSNAIGIPLLAIIQGGVATIGYLLFGAPNILLLGFLTCFATIIPMVGTA 76

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+ YL I G+ FNA  +  +GAI +   D  +R  L         L T FG+V G
Sbjct: 77  LVWFPVAAYLAISGDWFNAIGIAAYGAIVVSQSDNLIRFILQKKMADTHPLITIFGVVIG 136

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +   G +G+  GP+L+AL  +          + +  + S
Sbjct: 137 LPLFGFMGVIFGPLLLALFFLFVDMFKKEYLDLRNNLPS 175


>gi|168211565|ref|ZP_02637190.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           B str. ATCC 3626]
 gi|168218043|ref|ZP_02643668.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           NCTC 8239]
 gi|170710453|gb|EDT22635.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           B str. ATCC 3626]
 gi|182379960|gb|EDT77439.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           NCTC 8239]
          Length = 354

 Score = 73.5 bits (179), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 102/329 (31%), Gaps = 6/329 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + +  + +++  +I  + +    +  P L A I            I K + +    + 
Sbjct: 6   IKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNVGLASF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----HGIPVPRWLSDIPGGMWAS 120
           I+T     + I+           E   L + +                 L +     +  
Sbjct: 66  ISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIEVNFID 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 + +         T L  +    + +             + +IF +++ +F  ++
Sbjct: 126 NAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTYFLSKE 185

Query: 181 GFSISQQ--LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +I+    L +     +      I   + K+  +       +     ++    +    +
Sbjct: 186 LNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGFSFLNI 245

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L V+ A++ ++P           I++        +        I +F++ + L P
Sbjct: 246 KYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILYIFIFLLRQFLEP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   + +  L     +  G+   GLLG
Sbjct: 306 KLMSSTLGIHPLLILICIFIGLELNGLLG 334


>gi|228982151|ref|ZP_04142442.1| hypothetical protein bthur0002_53070 [Bacillus thuringiensis Bt407]
 gi|228777576|gb|EEM25852.1| hypothetical protein bthur0002_53070 [Bacillus thuringiensis Bt407]
 gi|326943236|gb|AEA19132.1| hypothetical protein CT43_CH5479 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 300

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 88/307 (28%), Gaps = 19/307 (6%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           I          +   +     V ++    + L        +++ +L+ +  +  ++    
Sbjct: 8   ISRKLDHFMPINRKIIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD- 66

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                        + +    LS      +       TN   F  +      +        
Sbjct: 67  -----SELIRYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEK 121

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              +     F          ++            +   +   +          +IA+   
Sbjct: 122 SRIVGFTAKFKESRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNC 169

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWG 285
           ++   A W+ G P  + L ++  ++ +IP    I     + +     G I     + +  
Sbjct: 170 VLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILIIV 229

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   +    L P  +     LP   TF  L+     +G+ GL IG  +   +  +   +
Sbjct: 230 TVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVT 289

Query: 346 IMAIKEN 352
              ++++
Sbjct: 290 SDEMEKD 296


>gi|229138654|ref|ZP_04267236.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST26]
 gi|228644773|gb|EEL01023.1| UPF0118 membrane protein [Bacillus cereus BDRD-ST26]
          Length = 292

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 19/300 (6%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
                     K + +   +     + ++      L        +++ +L+ +  L  Q+ 
Sbjct: 1   MDRFQRFISKKLKVNRKIVIACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNP 60

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                                       ++  +  +     G+D I +  +  G + L  
Sbjct: 61  PD-----------------NEIIKYALSTINGMEVSKYIEQGVDVIYQSIANIGKVSLQI 103

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            LS+I  +  L    R     S+  +S  +  +            +          +IA+
Sbjct: 104 LLSLILSLFFLLEKERIITFTSKFKESKLKIFYEEI-AYFGERFARSFGKVIEAQFLIAV 162

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLF 282
              ++   A  + G P  + L V+  ++ +IP    I     + I     G +     + 
Sbjct: 163 VNCILTVIALIVLGFPQLLVLAVMIFLLGLIPVAGVIISLFPLCIIAYNVGGVIYVVYIL 222

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++  +   +    L P  +     LP   TF  L+     +G+ GL IG  +   +  + 
Sbjct: 223 VFITVIHALESYFLNPKFMSAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIFIFLLDVL 282


>gi|228903918|ref|ZP_04068032.1| hypothetical protein bthur0014_50720 [Bacillus thuringiensis IBL
           4222]
 gi|228855708|gb|EEN00254.1| hypothetical protein bthur0014_50720 [Bacillus thuringiensis IBL
           4222]
          Length = 300

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 89/307 (28%), Gaps = 19/307 (6%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           I          +   +     V ++    + L        +++ +L+ +  +  ++    
Sbjct: 8   ISRKLDHFMPINRKIIIAFLYVMLIGGIAITLFKYLPVLTIQISQLIYQFNVFLRNPPD- 66

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                        + +    LS      +       TN   F  +      +        
Sbjct: 67  -----SELIKYAVNAVNHMELSKYVGQGVDILYKSITNVGKFGLQVLLSLILSLFFLLEK 121

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
              +   + F          ++            +   +   +          +IA+   
Sbjct: 122 SRIVGFTVKFKESRLAIFYTEI------------EYFGKKFARSFGKVIEAQFLIAVVNC 169

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWG 285
           ++   A W+ G P  + L ++  ++ +IP    I     + +     G I     + +  
Sbjct: 170 VLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFPLCMIAYNIGGIMYVVYILVIV 229

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +   +    L P  +     LP   TF  L+     +G+ GL IG  +   +  +   +
Sbjct: 230 TVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWGLIIGIPIFIFLLDVLDVT 289

Query: 346 IMAIKEN 352
              ++++
Sbjct: 290 SDEMEKD 296


>gi|255023357|ref|ZP_05295343.1| membrane protein YueF [Listeria monocytogenes FSL J1-208]
          Length = 250

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 82/245 (33%), Gaps = 14/245 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+     
Sbjct: 72  PRLLSVILIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSNN---- 127

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
             S L    +        +S   + +  +D +             + + ++ +   +F+ 
Sbjct: 128 --SALKDLDIKQELEKLNISLPKIMSVVVDGVASSFGAIISFVSSFVMILVTVPFIVFYM 185

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           ++DG    +           +  K+I + + K I +      I  +  GL     Y + G
Sbjct: 186 FKDGHKFVESSGKFFPAGIRSEAKQIIKEMNKTISTYISSQAIDCMFVGLFTFIGYLIIG 245

Query: 238 VPSHV 242
            P  +
Sbjct: 246 QPYAL 250


>gi|207091774|ref|ZP_03239561.1| membrane protein [Helicobacter pylori HPKX_438_AG0C1]
          Length = 323

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/330 (16%), Positives = 119/330 (36%), Gaps = 23/330 (6%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           L A ++    + +      +        +++  + +  + IVPL F+ Y     + E+  
Sbjct: 4   LIAGLLCVGFFQVKVFLDKRFFN--IVSSLLCVLVLASVLIVPLYFIVYKSSNIIFEI-- 59

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
                 +    + +WL         +E  +   +         E F   +   ++ + +S
Sbjct: 60  ----NFEKFSALIKWLK-----GTITENLSHFPTIHDGASKFLENFSAASITGYLLKISS 110

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
             G   L      +F++  LFFF+  G    +    +         KKI   V  ++R  
Sbjct: 111 YVGRYSLKLITDALFILGLLFFFFYYGERFYRYFLGVLPLGI-NQSKKIFEEVAGILRIV 169

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
            L   I  I EG+  G      G        +      +   G  + +  ++IY L  GN
Sbjct: 170 LLTSLITVILEGVAFGVMIVWFGHDGWSLGILYGLASLVPAVGGALIWIPIAIYELYHGN 229

Query: 275 IFNATCLFLWGAIELF-IVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMGL 325
           +  A  + L+  + +  ++D  ++P         +    +K+  +  FF ++ G+   G 
Sbjct: 230 VNEAIFIALYSILLISVLIDSVIKPILIVFIKKRIFKTTLKINEMLIFFSMIAGISQFGF 289

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEK 355
            G+ +GP + A    + +       +N +K
Sbjct: 290 WGIIVGPTITAFFIALLRLYENYFIQNDQK 319


>gi|110800933|ref|YP_697338.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           ATCC 13124]
 gi|110675580|gb|ABG84567.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           ATCC 13124]
          Length = 354

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 103/329 (31%), Gaps = 6/329 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + +  + +++  +I  + +    +  P L A I            I K + +    + 
Sbjct: 6   IKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNVGLASF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----HGIPVPRWLSDIPGGMWAS 120
           I+T     + I+           E   L + +                 L +     +  
Sbjct: 66  ISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIEVNFID 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 + +         T L  +    + +             + +IF +++ +F  ++
Sbjct: 126 NAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTYFLSKE 185

Query: 181 GFSISQQ--LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +I+    L +     +      I   + K++ +       +     ++    +    +
Sbjct: 186 LNTINFSKTLSNYLNSNYSNRILTILYEIKKMLLTYCFSYLFLIFISFVLTFLGFSFLNI 245

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L V+ A++ ++P           I++        +        I +F++ + L P
Sbjct: 246 KYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILYIFIFLLRQFLEP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   + +  L     +  G+   GLLG
Sbjct: 306 KLMSSTLGIHPLLILICIFIGLELNGLLG 334


>gi|301114839|ref|XP_002999189.1| conserved hypothetical protein [Phytophthora infestans T30-4]
 gi|262111283|gb|EEY69335.1| conserved hypothetical protein [Phytophthora infestans T30-4]
          Length = 922

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 73/232 (31%), Gaps = 5/232 (2%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           + + +S     + +  L +  L+   S  +   +    +    +    +           
Sbjct: 282 LVQAVSFAYSKVDSVNLTSVQLTDWTSKGLEVSSIAVGSVAQLVFLVFTLVIAFVSLGIR 341

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           S  F+    +    +   I + ++ L           + R + KVI   F     +A   
Sbjct: 342 SFFFISSLFYLLCTNWDPIERFVEDLLPIQIDKRP-DVVRSLRKVIEGVFFLPLKMASIH 400

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            +V   ++ +           +T  ++++P   P       +  +    + ++    L  
Sbjct: 401 AIVTMVSFTIVNADFMYLATTVTFFISIVPIIPPYLVCVPWVISI---GLTSSIIKALAL 457

Query: 286 AIELFIVDKTLRPFLVGGP-IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
               ++    L   L     + L    +   +V GV   G  G+  GP+++ 
Sbjct: 458 FAVQYVAFTVLDEMLYEKSIVALNAYVSALSVVFGVYVFGFEGVIFGPLIVC 509


>gi|229014603|ref|ZP_04171718.1| hypothetical protein bmyco0001_50040 [Bacillus mycoides DSM 2048]
 gi|228746680|gb|EEL96568.1| hypothetical protein bmyco0001_50040 [Bacillus mycoides DSM 2048]
          Length = 317

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 96/331 (29%), Gaps = 23/331 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLFLF 82
           ++     +L   ++ +           K       +   +  +  V ++    + L    
Sbjct: 1   MQSMLNLILITFMLTYLMDRFQKFISRKLDHFMPINRKIIIALLYVMLVAGIAITLFKYL 60

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
               +++ +L+ +  +  ++                 + +    LS      +       
Sbjct: 61  PVLTIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYKSI 114

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
           TN   F  +      +           +     F          ++            + 
Sbjct: 115 TNVGKFGLQVLLSVILSLFFLLEKARIVAFTSKFKESRLAIFYNEI------------EY 162

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
             +   +          +IAI   ++   A W+ G P  + L ++  ++ +IP    I  
Sbjct: 163 FGKKFARSFGKVIEAQFLIAIVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIIS 222

Query: 263 -TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
              + +     G I     + +   +   +    L P  +     LP   TF  L+    
Sbjct: 223 LFPLCMIAYNIGGIMYVVYIVVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMILIFSEH 282

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +G+ GL IG  +   +  +   +   ++++
Sbjct: 283 FLGVWGLIIGIPIFIFLLDVLDVTSDEMEKD 313


>gi|330719046|ref|ZP_08313646.1| permease [Leuconostoc fallax KCTC 3537]
          Length = 331

 Score = 73.1 bits (178), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 95/316 (30%), Gaps = 21/316 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F + +L   I  + +  +        + S      I  + VM   I+ +       + ++
Sbjct: 31  FMSLLLLTTIFAYLAMTLAKYIGRYSKLSHGLSVTIVYLIVMTALILGIKHGASTLIQQV 90

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             ++      N H   +   +        +     + ++   S        +    +  +
Sbjct: 91  DSMIHLAQHINWHKNGILNEIYKNGHQYTSFISTNQLINTGLSQLSHFGHIIYELILALL 150

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
             F             +     I   F    G                     I+     
Sbjct: 151 FSFIFSITYP---KLRNWGKNFINSPFKMFFGEFYI-----------------IAHRFIT 190

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIY 268
           ++   F    II +    ++ SA  +   P  +   ++  I+ +IP    I     +++ 
Sbjct: 191 ILGKLFEVQLIICVINTTLMISALAILQFPYLLGFSIMIFILGLIPVFGVIISLIPLTVT 250

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             I G+   A  + LW A    +    L P L+     +P L     L+   R +G  GL
Sbjct: 251 AFIIGDWHTALVIILWVAFIHLLESYFLHPHLMSQKTHMPILVILINLIIMERLLGAWGL 310

Query: 329 FIGPVLMALIAVIWKE 344
            +G  ++  +   ++ 
Sbjct: 311 IVGLPILTFLLDFFRI 326


>gi|166366520|ref|YP_001658793.1| hypothetical protein MAE_37790 [Microcystis aeruginosa NIES-843]
 gi|166088893|dbj|BAG03601.1| UPF0118 membrane protein [Microcystis aeruginosa NIES-843]
          Length = 186

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 4/163 (2%)

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
              DG  + +    L    +   + K      +       G  ++ +   +    ++ L 
Sbjct: 1   MLIDGDKLWRSFLQLLPIAYRERFAK---SFRQSFLGFIRGQLLLMLFLSVTSFLSFSLL 57

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKT 295
           G+   + L  I  ++  IPG        +   L      +  A   F+   + + I D  
Sbjct: 58  GIKYGLILASILGVIDAIPGVGATLGILLVTILTFTSQGLAIAVKAFIVCVVLVQIQDNI 117

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
           LRP ++G  ++L  +  F  L  G R  GLLG+F+   +  +I
Sbjct: 118 LRPKVMGNALELNPVILFLSLFIGERVAGLLGIFLSIPIAGMI 160


>gi|313683109|ref|YP_004060847.1| hypothetical protein Sulku_1987 [Sulfuricurvum kujiense DSM 16994]
 gi|313155969|gb|ADR34647.1| protein of unknown function UPF0118 [Sulfuricurvum kujiense DSM
           16994]
          Length = 345

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 56/353 (15%), Positives = 122/353 (34%), Gaps = 22/353 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +     +++          + F+  ++ A ++  ++  I   F+           +   
Sbjct: 3   KEYFTLTLLLIASYGIFILYEPFWMSIVVASLLAMSTHHIQMGFLQLTNNRFLASMLSTL 62

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  +  F     F+F            ++ +  QH  PV   + +     W + L     
Sbjct: 63  LLGLLFFAPLGYFMF------------RLSVMLQHLDPVIMSMLEAKLRGWLAHLPPSLS 110

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                ++     F        I  +AS+ G   + +    +F++I  F  +  G  I + 
Sbjct: 111 RVEVKIEAALTKFDPETLTQHIIAYASQIGSFTMSFLSGTVFILIFYFIAHYYGRDIFEF 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                 H        I   +   +   F  + + A+ EG + G A    G    +   + 
Sbjct: 171 FKRSA-HFPQQESTLIIFEMRSSMSVVFYSILVTAVFEGALFGVAVGYMGYNGLLFGIMY 229

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRP-------- 298
                +   G  + +   +++ L  G+  NA  + L+  I + ++ D  ++P        
Sbjct: 230 GFASLIPVVGGVVMWLPFALFELALGHTENALFITLYTIIVISVIADTFIKPVIIKLINQ 289

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            L+    K+  L  FF ++ G+ T G  G+ IGP +  L   + K +    +E
Sbjct: 290 RLIKPQEKINELIIFFAILAGLATFGFWGMIIGPAITVLFLTLMKITEAQSEE 342


>gi|296273984|ref|YP_003656615.1| hypothetical protein Arnit_2458 [Arcobacter nitrofigilis DSM 7299]
 gi|296098158|gb|ADG94108.1| protein of unknown function UPF0118 [Arcobacter nitrofigilis DSM
           7299]
          Length = 355

 Score = 73.1 bits (178), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 120/345 (34%), Gaps = 22/345 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           PQ  +  + +      +     F   +  AL++   +  + ++   K + +    + + T
Sbjct: 3   PQYFLISIGVITFYFLIELFNPFLKAMSVALLLAVATNTLSNNVSIKIK-NKFISSTLMT 61

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + +  +F +PLL+  +     +  +  + +                    W + L    L
Sbjct: 62  IVLAFVFFIPLLYCIFSFATLINNIDQQALSKMLT-----------KFESWVALLPNDFL 110

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
              + L            I+ +  F +  G     + + ++ ++I  FFF      +S  
Sbjct: 111 IIKEQLTDAISKINIKEFIESLLSFGAYLGKNSAKFIIDMVMILIFYFFFNFYSVELSSY 170

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           L SL   L       +      V+      +   AI EG + G      G    +   + 
Sbjct: 171 LKSLLP-LKKEDASVLFFESSTVMSVVLYSVLATAILEGFLFGIFITFFGYDGILLGVLY 229

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRP-------- 298
                +   G  I +  +++Y     ++ N   + ++  + + I  D  ++P        
Sbjct: 230 GFASLIPVVGGLIMWLPMALYEGFTVSLTNGLIIAIYSVVVIAIFADTFVKPVIIKYINL 289

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +V     +  L  FF ++ G+ T G  G+ IGP +++    I +
Sbjct: 290 KVVKTKANINELLIFFSIIAGLSTFGFWGMIIGPAMVSFFISIVQ 334


>gi|251797637|ref|YP_003012368.1| hypothetical protein Pjdr2_3650 [Paenibacillus sp. JDR-2]
 gi|247545263|gb|ACT02282.1| protein of unknown function UPF0118 [Paenibacillus sp. JDR-2]
          Length = 346

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 55/354 (15%), Positives = 115/354 (32%), Gaps = 25/354 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I R + + +++V LY L+     +L   ++ F    + S    +       + V   V 
Sbjct: 12  IIKRIVFVLLVVVLLYSLRDMLNLLLLLFMVTFVMMRLQSFITKQI---RRVIPVSPVVV 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              L++  +  L Y  +  + +L++++V    +         +                 
Sbjct: 69  TSVLYVALVFGLVYGLVNYVPKLINEIVDIVNNVQKFLGSAQN----------------- 111

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +  +    L           A  +      +   I+ +I+  +FF  +   I Q  +
Sbjct: 112 -DQIAQVVADTLDKIEYKTFLNSALAYAKKIGGWLEIILLVILLSYFFLLERRKIVQFTE 170

Query: 190 SLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                     + +                    +IA+    +  +  W+ G P   AL +
Sbjct: 171 KFSNSSIGWLYLEFRYFGGKFIASFGKVLEVQLMIALFNTALTIAGLWIMGFPYLFALTI 230

Query: 247 ITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +  ++++IP    +  F  + I     G I     + +   +   +    L P L     
Sbjct: 231 MVFLLSLIPVAGVVVSFVPIGIIGYQLGGIKTVIWVIVLVLLIHALETYFLNPRLYSHKT 290

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            LP   TFF L+     MG+ GL IG  +   +  + K       E + K   +
Sbjct: 291 NLPMFYTFFILILSEHYMGIWGLLIGIPIFMFMLDVLKVEQADSLEEQAKPVKS 344


>gi|289808945|ref|ZP_06539574.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 160

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 2/149 (1%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           ++   + + I +   G  +  +  G+     + L G+   + L V+     +IP      
Sbjct: 5   QVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFV 64

Query: 262 FTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
            T   +   L   G        F    I   +    L P L    + L  L     +V  
Sbjct: 65  VTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIF 124

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               G  G+F    L  LI  +       
Sbjct: 125 GGLWGFWGVFFAIPLATLIKAVVHAWPDG 153


>gi|124023342|ref|YP_001017649.1| permease [Prochlorococcus marinus str. MIT 9303]
 gi|123963628|gb|ABM78384.1| Predicted permease [Prochlorococcus marinus str. MIT 9303]
          Length = 333

 Score = 72.7 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/305 (10%), Positives = 88/305 (28%), Gaps = 17/305 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     +  A+++      +      +          +  V ++    +    L   
Sbjct: 20  WQLRWVLLVLFGAVVLAVALDVLIEKLQDRLSWPRPLSLAVVLVVLLLGGALVFQLLVPE 79

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + +++EL + V         +      +                  +L+         +
Sbjct: 80  LITQVQELGNLVPTLVTKLKSMLVSNPRLM-----------------NLEESFTEQFSWD 122

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +            +  + ++ M +       D  S  Q + +           ++ 
Sbjct: 123 RIQPLGSQLIGVAGGAANSLIQLLLMSLLAVLLALDPASHRQMVIAATPRPARQEMAELL 182

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                 +     GMTI A    ++  +   L  VP  +   ++  ++  +P   P + + 
Sbjct: 183 DQCRLALGGWLAGMTISASSVFVLTWAGLALLKVPLALLSALVCGLLTFVPTIGPTAASL 242

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + + + +  +      + +   I   +    L P L+   + L         +     +G
Sbjct: 243 LPLAMALLVSPLLMLQVLVLRLILQNLEAFLLTPLLLRRTVNLLPTVALMAQLSLGALLG 302

Query: 325 LLGLF 329
           L G+ 
Sbjct: 303 LPGVL 307


>gi|260794272|ref|XP_002592133.1| hypothetical protein BRAFLDRAFT_85004 [Branchiostoma floridae]
 gi|229277348|gb|EEN48144.1| hypothetical protein BRAFLDRAFT_85004 [Branchiostoma floridae]
          Length = 1354

 Score = 72.7 bits (177), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/204 (17%), Positives = 69/204 (33%), Gaps = 5/204 (2%)

Query: 140  FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             + T  I  +    +      L   + +  +   L         +   ++          
Sbjct: 983  SMVTATISIVFFSGTAILNFVLSTVIFLTTLFYLLSVSENQYKPVEWIVNLFPSPGQGGS 1042

Query: 200  WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              ++ + V + IRS F     +A+  GL     + + G+        + A+ A +P    
Sbjct: 1043 TNRLGQTVEEAIRSVFGASLKMAVFYGLYTWLTHTVFGINIVFIPSALAAVFAAVPFVGT 1102

Query: 260  ISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                  ++  L   +     A  L +   I +  VD  +   + GG        T   + 
Sbjct: 1103 YWAALPAVLDLWLVQDKSVLAILLAVCHLIPMSFVDTAIYSEIKGGG---HPYLTGLAVA 1159

Query: 318  GGVRTMGLLGLFIGPVLMALIAVI 341
            GG+   GL G  IGP+L+  + V+
Sbjct: 1160 GGIYIAGLEGALIGPILLTDLGVL 1183



 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 36/312 (11%), Positives = 90/312 (28%), Gaps = 34/312 (10%)

Query: 54   KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
            K   +     V AT+S++      +L      ++ +  L   + ++     PV   ++  
Sbjct: 975  KGNINLALSMVTATISIVFFSGTAILNFVLSTVIFLTTLFYLLSVSENQYKPVEWIVNLF 1034

Query: 114  PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            P             +  ++++ +    LK      +  + +          +      + 
Sbjct: 1035 PSPGQGGSTNRLGQTVEEAIRSVFGASLKMAVFYGLYTWLTHTVFGINIVFIPSALAAVF 1094

Query: 174  LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                +   +  +         +       I   V  +I  +F+   I +  +G       
Sbjct: 1095 AAVPFVGTYWAALPAVLDLWLVQDKSVLAILLAVCHLIPMSFVDTAIYSEIKGG------ 1148

Query: 234  WLAGVPSHVALGVITAIMAMIPGGAPISFTAV--SIYLLIKGNIFNATCLFLWGAIELFI 291
               G P  +    +   + +      +    +   + +L  G+ +        G     +
Sbjct: 1149 ---GHPY-LTGLAVAGGIYIAGLEGALIGPILLTDLGVLKGGHPYLTGLAVAGGIYIAGL 1204

Query: 292  VDKTLRP------FLVGGPIKL----------------PFLPTFFGLVGGVRTMGLLGLF 329
                + P            +++                    T   + GG+   GL G  
Sbjct: 1205 EGALIGPIDYARLRTQQKTLRIEEFLYSCPSHCPQCGGHPYLTGLAVAGGIYIAGLEGAL 1264

Query: 330  IGPVLMALIAVI 341
            IGP+L+  +AV+
Sbjct: 1265 IGPILLTDLAVL 1276



 Score = 39.6 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 271  IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL---PFLPTFFGLVGGVRTMGLLG 327
              G+ +        G     +    + P L+     L       T    V G+   GL G
Sbjct: 1240 CGGHPYLTGLAVAGGIYIAGLEGALIGPILLTDLAVLKGGHPYLTGLAEVRGIYIAGLEG 1299

Query: 328  LFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
              IGP+L+  + V        I+ +    +S 
Sbjct: 1300 ALIGPILLCCLLVAMNVYSGMIQGSGMTPTSE 1331


>gi|317054498|ref|YP_004118523.1| hypothetical protein Pat9b_5811 [Pantoea sp. At-9b]
 gi|316952493|gb|ADU71967.1| protein of unknown function UPF0118 [Pantoea sp. At-9b]
          Length = 341

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/345 (11%), Positives = 103/345 (29%), Gaps = 21/345 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + +IL+ L+        VL AL++     P+ S    K+         I +V
Sbjct: 12  RVLILLACLTLILIGLHLSAHLINQVLLALLLSIMLDPLVSWLEQKRIPRILSSLAIISV 71

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ + +  +                           +       P  +           
Sbjct: 72  LLLVIVVTIIKLTVLT-------------------PDLILLSRQTPLLLTTRLQEITQAL 112

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               + +  +  L    +  + ++ + F           + + + L F   +   +   L
Sbjct: 113 DQVGIALAPDEMLAFIDVGAVVKWVTAFLTQIPGVLSWWVMVFLMLLFMLYELPLLKNAL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +        A +  +   +  VI       T+  I  G+++     L G+      GV+ 
Sbjct: 173 EKRAGGKSAALYHALDDGIQSVI-VYARVKTLTGIFGGVIVWGGAQLLGLKFAFFWGVLM 231

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            +   IP           +    I  ++  A  +  +  +    +   L P ++G  + +
Sbjct: 232 FVFNYIPVLGSFMAAIPPVVQSYIAFDLEVALAIAGFFVLLNLTLSSVLEPLMIGKRLDM 291

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                    +     +G+ G  +   L  LI  +   S    +++
Sbjct: 292 ALTSQLLAFLFWQALLGITGAILAIPLTYLIKKVLLASYRQQQDS 336


>gi|154243769|ref|YP_001409342.1| permease-like protein [Xanthobacter autotrophicus Py2]
 gi|154162891|gb|ABS70106.1| permease-like protein [Xanthobacter autotrophicus Py2]
          Length = 239

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 34/83 (40%)

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  +      L   G + +  +D  LRP LVG   +LP        VGG+  +G+ G  
Sbjct: 157 ALISDYLTGAILLAVGVLVISTIDNFLRPALVGRGRRLPDYVVLISTVGGLSLIGMNGFV 216

Query: 330 IGPVLMALIAVIWKESIMAIKEN 352
           IGP++ AL    W         +
Sbjct: 217 IGPLIAALFVADWSPFTEEQLHS 239


>gi|167584523|ref|ZP_02376911.1| hypothetical protein BuboB_04261 [Burkholderia ubonensis Bu]
          Length = 260

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/208 (21%), Positives = 82/208 (39%), Gaps = 5/208 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFI--SKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A +I    WP+   F       E  T +A + T +V  L ++P+    
Sbjct: 56  WVIRAFIPAIAWACVIAIALWPLLKRFESHRLFRERPTVVATVITAAVSLLVVLPVAIAL 115

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + +  EL   +     +GIPVP  ++ +P G      W +         + +E  +K
Sbjct: 116 IQAIGQAHELREWLRTVQDNGIPVPDVVARLPVGAPQVAAWWQAHLGHP---LHAEAAMK 172

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
               +    F   FG       L   FM++ LF   R G  +S  L    +  F     +
Sbjct: 173 GVNSETFLAFGRHFGSKLAHAVLEFGFMLVTLFVILRAGHKLSGALLQGVQRAFGGNGAQ 232

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           +   +   +  T  G+ ++ +GEG +LG
Sbjct: 233 LIERMAAAVHGTVTGLVVVGLGEGALLG 260


>gi|167645921|ref|YP_001683584.1| hypothetical protein Caul_1957 [Caulobacter sp. K31]
 gi|167348351|gb|ABZ71086.1| protein of unknown function UPF0118 [Caulobacter sp. K31]
          Length = 354

 Score = 72.3 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/325 (11%), Positives = 89/325 (27%), Gaps = 24/325 (7%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +   +  LY  +    P+  A ++      +    +       +   +   V    +   
Sbjct: 15  VAAAMALLYVFRALLWPLAMAFVLAILVNALVRVIVRVW---PSAGRLTVMVLASAVVAG 71

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L+      +    EL  ++         +      +                   +K+ 
Sbjct: 72  LLMVGVVVVVSGAAELAGQLPQLAVRLNALFERAGQL-------------------VKLE 112

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
             +         +P  A+R           ++  ++ L F       I  ++  +     
Sbjct: 113 GVSLTSLASGLDLPSLAARVLGSLQGAVSGMLLTVLFLIFILTSRHLIRNKMQIIASFRR 172

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
           P     +     K + +     T+  +      G+   LAG+ + +   +   +++ IP 
Sbjct: 173 PTGMPSVLERTVKGVETYVWIQTVTGLMIAAASGAIMALAGLDNALFWTLALFMLSYIPV 232

Query: 257 GAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                         LL    ++ A  +FL      F+V   + P +      +       
Sbjct: 233 LGVGVGSLAPALFALLQFPTVWPALAIFLGIQAVSFLVGNLVLPKMQAASQNIDPTIGLL 292

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIA 339
            +       G+ G F+   L   + 
Sbjct: 293 AVGVWSVLWGIPGAFLAIPLTLALM 317


>gi|154250157|ref|YP_001410982.1| hypothetical protein Fnod_1482 [Fervidobacterium nodosum Rt17-B1]
 gi|154154093|gb|ABS61325.1| protein of unknown function UPF0118 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 324

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 105/326 (32%), Gaps = 29/326 (8%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ +      ++            Y   + K   +  FLAVI+ + V+ +F+  ++  F 
Sbjct: 25  VWKVPFVVGALVLGFYFSIILSVPYDFVLKKT--NKKFLAVISYILVVFIFVYTIISFFP 82

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
               ++ +L                                    +  +  + +   LK+
Sbjct: 83  KTFDQVYKLFQASKDL-------------------------NINGNFPTWLVNAINELKS 117

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
           N    +    ++   +       ++F+++ +         +++ +  L     P Y KK 
Sbjct: 118 NISSILLSILNKVVGVLPSLITMLMFILVTMVGIESIKSYLAKNISILF-VENPDYGKKF 176

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISF 262
              +   IR    G  +++     +      L  +PS + LGV+T +    P     IS 
Sbjct: 177 VYELFGDIRKYIRGQVLVSFISAFLTTLGLILLNIPSALTLGVLTFLGGFFPFVGLLISA 236

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
             + ++    G + +   L                P +    +KL +      +      
Sbjct: 237 VPMYLFAFSTGGLKSVIFLTFLLVGVNQAESWIYGPRIQSDNLKLHWFVIILAIFLLGDI 296

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMA 348
           +G +G+ I   ++  +   WK  ++ 
Sbjct: 297 LGFVGVLIAIPVLLFVRKFWKYYVLK 322


>gi|168207750|ref|ZP_02633755.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           E str. JGS1987]
 gi|170660939|gb|EDT13622.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           E str. JGS1987]
          Length = 354

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 102/329 (31%), Gaps = 6/329 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + +  + +++  +I  + +    +  P L A I            I K + +    + 
Sbjct: 6   IKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNVGLASF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----HGIPVPRWLSDIPGGMWAS 120
           I+T     + I+           E   L + +                 L +     +  
Sbjct: 66  ISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIEVNFID 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 + +         T L  +    + +             + +IF +++ +F  ++
Sbjct: 126 NAILNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTYFLSKE 185

Query: 181 GFSISQQ--LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +I+    L +     +      I   + K+  +       +     ++    +    +
Sbjct: 186 LNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGFSFLNI 245

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L V+ A++ ++P           I++        +        I +F++ + L P
Sbjct: 246 KYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILYIFIFLLRQFLEP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   + +  L     +  G+   GLLG
Sbjct: 306 KLMASTLGIHPLLILICIFIGLELNGLLG 334


>gi|315637759|ref|ZP_07892961.1| acid membrane antigen A [Arcobacter butzleri JV22]
 gi|315477980|gb|EFU68711.1| acid membrane antigen A [Arcobacter butzleri JV22]
          Length = 348

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 118/352 (33%), Gaps = 22/352 (6%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + ++   +     F   +  ++++   +  +      K +        + T+++  LF
Sbjct: 10  IAILLLFFMVELFNPFLKAIFVSVLLTIATSSLTLHLEHKLK-KRLVATSVMTIALAALF 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +P+L+          ++  +V++ N   I +               L          L 
Sbjct: 69  FLPILYCILSFATFFNQVDQQVLVKNLDEIKLL-----------VHNLSMDFTFLNDFLN 117

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            ++        +  I   ++  G   + +   II +++  FFF      I+  +  L   
Sbjct: 118 NITSKIDVGKTVQDIVSISANLGKNSVKFMFDIILILVFFFFFTLYTTQIATFIRDLLPI 177

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                   +      V+        + AI EG + G      G    +   +      + 
Sbjct: 178 K-KEDSIILFHESSSVMTVVLYSTLVTAIFEGFLFGFFLTFFGYDGLLFGVLYGFASLIP 236

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGP--------I 305
             G  I +  ++IY     +  NA  + ++  + + I  D  ++P ++            
Sbjct: 237 VVGGVIMWLPIAIYEASINSFTNALIIAIYSIVVISIIADTFIKPMIINYINKKIIKTPT 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +  L  FF +V G+ T G  G+ IGP +++L   I         + KE   
Sbjct: 297 NVNALLIFFSIVAGLSTFGFWGMIIGPAMVSLFISIMNLLKKYSDDFKESED 348


>gi|157738009|ref|YP_001490693.1| acid membrane antigen A [Arcobacter butzleri RM4018]
 gi|157699863|gb|ABV68023.1| acid membrane antigen A [Arcobacter butzleri RM4018]
          Length = 348

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/352 (14%), Positives = 118/352 (33%), Gaps = 22/352 (6%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + ++   +     F   +  ++++   +  +      K +        + T+++  LF
Sbjct: 10  IAILLLFFMVELFNPFLKAIFVSVLLTIATSSLTLHLEHKLK-KRIVATSVMTIALAALF 68

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +P+L+          ++  +V++ N   I +               L          L 
Sbjct: 69  FLPILYCILSFATFFNQVDQQVLVKNLDEIKLL-----------VHNLSMDFTFLNDFLN 117

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            ++        +  I   ++  G   + +   II +++  FFF      I+  +  L   
Sbjct: 118 NITSKIDVGKTVQDIVSISANLGKNSVKFMFDIILILVFFFFFTLYTTQIATFIRDLLPI 177

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                   +      V+        + AI EG + G      G    +   +      + 
Sbjct: 178 K-KEDSIILFHESSSVMTVVLYSTLVTAIFEGFLFGFFLTFFGYDGLLFGVLYGFASLIP 236

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGP--------I 305
             G  I +  ++IY     +  NA  + ++  + + I  D  ++P ++            
Sbjct: 237 VVGGVIMWLPIAIYEASINSFTNALIIAIYSIVVISIIADTFIKPMIINYINKKIIKTPT 296

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +  L  FF +V G+ T G  G+ IGP +++L   I         + KE   
Sbjct: 297 NVNALLIFFSIVAGLSTFGFWGMIIGPAMVSLFISIMNLLKKYSDDFKESED 348


>gi|116074652|ref|ZP_01471913.1| hypothetical protein RS9916_28999 [Synechococcus sp. RS9916]
 gi|116067874|gb|EAU73627.1| hypothetical protein RS9916_28999 [Synechococcus sp. RS9916]
          Length = 332

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/324 (9%), Positives = 99/324 (30%), Gaps = 18/324 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +N + ++  + + ++ + ++ L+     +  A+++             +           
Sbjct: 1   MNARNLLAILTLVVLTLLIWELRWVLLVLFGAVVLAVALDVPIQKLQ-RFGLPRPIALAA 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++    + +  L    + ++++L + V +       +      +            
Sbjct: 60  VLLVMVLGGSLVIQLLVPELIDQIQQLGALVPVVFSKLQTMVANEPRL------------ 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                QSL     +      ++ +            +  + ++ M +       D  S  
Sbjct: 108 -----QSLTQNLPSQFSWERLEPVGTQLIGVAGGAANGVVQLLLMSLLAVLMVLDPASHR 162

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L +          K++       +     GMT+ A    L+      L   P  +   
Sbjct: 163 RMLIAATPRPARPMMKRVLDQCRTALGGWLAGMTLSATSVFLLTWLGLALLKAPLALLSA 222

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++  +P   P + T + + + +  +      + +   +   +    L P L+   +
Sbjct: 223 LVCGLLTFVPTIGPTAATLLPLSMALLVSPTLMLQVLVLRLVLQNLEAFLLTPILLRRTV 282

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLF 329
            L         +     +GL G+ 
Sbjct: 283 NLLPTVALMAQLSLGALLGLPGVL 306


>gi|317969773|ref|ZP_07971163.1| hypothetical protein SCB02_09570 [Synechococcus sp. CB0205]
          Length = 333

 Score = 71.9 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/324 (11%), Positives = 100/324 (30%), Gaps = 17/324 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P+ ++  + + ++ +  + L+     +  A+++        S        S     ++
Sbjct: 1   MTPRSLLLLLSLVVLGLLAWELRWVLMVLFGAVVLAVALDVPVSWLRRGLRLSRPLALLL 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +  L       L    + ++ +L   V         +   +S +            
Sbjct: 61  VLMVLALLSWQLTDLLLPELLEQLNQLTQLVPALIARLSELLGGVSVL------------ 108

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                + L+      +  + +  I      F        + ++ M +       D  S  
Sbjct: 109 -----EGLEGRLADLITLDKLQPIGAQLIGFAGGAASGTVLLLLMGLLAILLVLDPRSHQ 163

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + + +L         + +     + +     GMT+ A    L+  +      VP  +  G
Sbjct: 164 RLVLALTPAHSRPLVQNLLTESRQALGGWLAGMTLSASVVFLLTWAGLAALKVPLALLSG 223

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +I  ++  +P   P   + + + + +  +   A  + +   +        L P L+   +
Sbjct: 224 LICGLLTFVPTIGPTLASLLPVAVSLLISPTLAVQVIVLRLVLQNGEAFLLTPLLLSRTV 283

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLF 329
            L         +     +GL G+ 
Sbjct: 284 NLLPTVALMAQLSLGALLGLPGVL 307


>gi|332142622|ref|YP_004428360.1| transport protein [Alteromonas macleodii str. 'Deep ecotype']
 gi|327552644|gb|AEA99362.1| transport protein [Alteromonas macleodii str. 'Deep ecotype']
          Length = 302

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 72/213 (33%), Gaps = 3/213 (1%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
           +  +   +                         ++  ++ +FF    G ++         
Sbjct: 75  QPDTSNSVTDKIKQSGINMGITLFSNAPFLLAQVMACVVLIFFLLVFGPNLFHVFIRDFP 134

Query: 194 HLFPAYWKKIS-RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
            +       +    + + + +  + ++II    GL    A++   +   +  G + A+M 
Sbjct: 135 VVTDKRRALVLVDQIQRELSAYIVTISIINTCLGLATAGAFYYLNIEDALLWGALVALMN 194

Query: 253 MIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
            +P    I+ + V + +  +  G   +A            I  + + P ++G  ++L  L
Sbjct: 195 FVPYLGGIASSMVLLVVGVVQFGLTSSAFLPAGVFLFLNIIESQLITPAVLGRSMQLNPL 254

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
                +       G++G+ +   ++  + +I +
Sbjct: 255 IIIIWIAITGWLWGVVGVLLAVPILMCVKIILE 287


>gi|296108736|ref|YP_003615685.1| protein of unknown function UPF0118 [Methanocaldococcus infernus
           ME]
 gi|295433550|gb|ADG12721.1| protein of unknown function UPF0118 [Methanocaldococcus infernus
           ME]
          Length = 326

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 122/334 (36%), Gaps = 25/334 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             ++  I+ ++L  +Y +  +      A+   + + PIY            F + +++  
Sbjct: 8   VFIKLFILGLMLFFVYMIIPYLDVFAYAIAFSYMALPIYKFL------RKFFSSSVSSFL 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + LFIVPL+ +F Y +  + +L+                LS          L       
Sbjct: 62  AIALFIVPLILIFIYSISVLIKLI----------------LSLDINYYINLLLKYNINLE 105

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S  +          +  +        +   D  L +I ++   ++F +DG  I   + 
Sbjct: 106 YLSKLLPEYFKYINTYLSSLISSIPEKILYLSDLALKLIMVVFCTYYFLKDGEKIKDVIL 165

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +    +    + + + + ++ +S F+    +++  G +    Y+L  +P    L V+TA
Sbjct: 166 KITPTEYEYKVEILLKYLHEIYKSLFISCLFLSVIIGFLAFIIYYLFSIPYPELLAVLTA 225

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVGGPIKLP 308
           I A +P          +   +   N        +   + L I+ D  LRP +V     + 
Sbjct: 226 IFAFLPIIGAWIIYLPASLYIALANPIKGLFFLILCIVFLNIIPDYILRPHIV--STDIH 283

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +      +    T+GL G  IGP+++  +   +
Sbjct: 284 PILVVIAFLIAPLTLGLAGFAIGPLIVGFLNAFY 317


>gi|147919479|ref|YP_686781.1| hypothetical protein RCIX2362 [uncultured methanogenic archaeon
           RC-I]
 gi|110622177|emb|CAJ37455.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 398

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 120/368 (32%), Gaps = 27/368 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              + M I++  ++    +  P++ A+ + + + P+        + +   +A+   + + 
Sbjct: 13  WALLGMAIVIFIVWISLPYVTPIVFAMFMYYITRPVKRRLQKYIK-NEAVVALGCLLLLT 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
              +  +L+L  + + ++   +++V +       +    + I     +    +       
Sbjct: 72  LPLLAIILYLILFAVGQLNTFLAQVNIPLLPPGQLSNLSTSISAIQQSFTNGSFKYESLG 131

Query: 132 SLKILSETFLKTNGIDFIP--RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
           ++       L                 GM  +D     I M++  FF       +++   
Sbjct: 132 NVLQDWYDRLSAYSSSLFSLKDLLYATGMTLVDVAFKTILMLLLAFFLLLYDDRLARWFK 191

Query: 190 SLGEHLFPAY---WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--------- 237
           S    L   +   + +  + V       F G  +  I   ++    Y             
Sbjct: 192 SSFPGLMKEHDGLFVRYVKAVDDDFEKVFFGNILSIIFFAIIATVVYSALNFFAPDPAFL 251

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN----------IFNATCLFLWGAI 287
           +P  V LG+ + I A++P           +   +  +           +          +
Sbjct: 252 IPFPVLLGIFSGIAALLPVLGGWMVDIPILIYALAQSLMNGSFSRYWWYLIVMAIAIFVL 311

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
              +    LRPF+  G + +         + G    G+ GLF+G + + +I   +K  + 
Sbjct: 312 VENLPTYLLRPFVSHGKVDV--GLLMLAYIIGPVIFGVPGLFLGAMALVIITHYFKIVVP 369

Query: 348 AIKENKEK 355
            +   K++
Sbjct: 370 GLNAEKKE 377


>gi|293372558|ref|ZP_06618940.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
 gi|292632367|gb|EFF50963.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
          Length = 176

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-P 259
           +++   +  ++RS  +G+ ++AI +G V    Y L G P+ + LG +T    +IP     
Sbjct: 17  QEVIHEINMIVRSNAIGIPLLAIIQGGVAMIGYLLFGAPNILMLGFLTCFATIIPMVGTA 76

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           + +  V+ YL I G+ FNA  LF +GAI +   D  +R  L         L T FG+V G
Sbjct: 77  LVWFPVAAYLAISGDWFNAIGLFGYGAIVVSQSDNLIRFILQKKMADTHPLITIFGVVIG 136

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +   G +G+  GP+L++L  +          + +  + S
Sbjct: 137 LPIFGFMGVIFGPLLLSLFFLFVDMFKKEYLDLRNNLPS 175


>gi|224372723|ref|YP_002607095.1| acid membrane antigen A [Nautilia profundicola AmH]
 gi|223589133|gb|ACM92869.1| acid membrane antigen A [Nautilia profundicola AmH]
          Length = 332

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/343 (16%), Positives = 109/343 (31%), Gaps = 24/343 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            + ++ + +        K +   +  A ++        S  IS K E+    + + T+  
Sbjct: 3   FLTFLTIVVGYFVYLTYKPYLLDIAIASLMAIAF-GKVSVLISNKIENKYLSSTVVTLIF 61

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             L   P+L+        +  +  + +                     A E         
Sbjct: 62  ALLIFGPILYFVVTAGKFISHIDIENIKNIIIKAQDLLQYLPQFVAEKAHEYIN------ 115

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                           + +             +      ++I  FF    G  I +    
Sbjct: 116 --------PDNIAQIYNTVAPIIGTLTAKSAVFIKDAFLIVIFFFFATLYGKEIMEFFKK 167

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +   L     +K+     +V+   F      AI EG++ G    + G        +    
Sbjct: 168 VIP-LEEKQLEKLFFGTSEVMSVVFYSTVFTAILEGILFGIIAKVYGFNFFFFTIMYAFS 226

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV-DKTLRPFLVG------- 302
             +   G  I +  VS+YL   GN   A  + L+  I + I+ D  ++P ++        
Sbjct: 227 SLIPVIGGVIMWGPVSLYLYSIGNTTGAVVVALYSIIVISIIADTFIKPIIIEFVKKTFD 286

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              +L  L  FF +V G+ + GL G+ IGP + A+   I +  
Sbjct: 287 ADTELNSLLIFFSIVAGLSSFGLWGIIIGPAVTAMFISILRFY 329


>gi|226326456|ref|ZP_03801974.1| hypothetical protein PROPEN_00304 [Proteus penneri ATCC 35198]
 gi|225205055|gb|EEG87409.1| hypothetical protein PROPEN_00304 [Proteus penneri ATCC 35198]
          Length = 162

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 2/155 (1%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            ++   V + I +   G     I  G+     +    +   V L VI  +  ++P    +
Sbjct: 3   AQVWIEVNQQITNYIRGKVTEMIIVGVFTYFVFAFFDLRYSVLLAVIVGVSVLVPYVGAV 62

Query: 261 SFTAVSIYLL--IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
             T   I +     G   +   LF+   +   +    L P L    + +  L     ++ 
Sbjct: 63  LATIPVIVIALSQWGLGSDFWALFIAYLVVQGLDSNLLVPILYSEAVNMHPLVIILSVII 122

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
                G  G+F    L  LI  +       I   +
Sbjct: 123 FGGMWGFWGVFFAIPLATLIKAVLHALPDEIANEQ 157


>gi|168214835|ref|ZP_02640460.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           CPE str. F4969]
 gi|170713727|gb|EDT25909.1| sporulation integral membrane protein YtvI [Clostridium perfringens
           CPE str. F4969]
          Length = 354

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 102/329 (31%), Gaps = 6/329 (1%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + +  + +++  +I  + +    +  P L A I            I K + +    + 
Sbjct: 6   IKSEKISVFFILYTLIFFTFFNTLKYTLPFLLAFIFSLLLKTPTQFLIKKFKLNVGLASF 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ----HGIPVPRWLSDIPGGMWAS 120
           I+T     + I+           E   L + +                 L +     +  
Sbjct: 66  ISTFIFFLIIIILFTLFITSLAYESSSLTNYIQEIINTNSKEFQNYFISLQNWIEVNFID 125

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                 + +         T L  +    + +             + +IF +++ +F  ++
Sbjct: 126 NAVLNLIKNTLISSFKEITVLILSFGTELIQKVFLLISYLPYTFMLLIFTVLSTYFLSKE 185

Query: 181 GFSISQQ--LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
             +I+    L +     +      I   + K+  +       +     ++    +    +
Sbjct: 186 LNTINFSKTLSNYLNSNYSNRILTILYEIKKMFLTYCFSYLFLIFISFVLTFLGFSFLNI 245

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
              + L V+ A++ ++P           I++        +        I +F++ + L P
Sbjct: 246 KYALLLSVLAALLDLLPVLGMPLIYFPLIFISYNSGNIFSAISLFILYIFIFLLRQFLEP 305

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
            L+   + +  L     +  G+   GLLG
Sbjct: 306 KLISSTLGIHPLLILICIFIGLELNGLLG 334


>gi|322807958|emb|CBZ05533.1| conserved membrane protein [Clostridium botulinum H04402 065]
          Length = 290

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 81/273 (29%), Gaps = 3/273 (1%)

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + I T+    + I  L +     + E+ +                    D     + +
Sbjct: 1   MASFIVTLIFFSIIITLLFWGINLLVHEVIDFGRNAQAYLYSHEKEISNYVDNIYRYYLN 60

Query: 121 ELWTKHLSHPQSLKILSE--TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
              +   S  +++       + +       I               + I+F +++ +FF 
Sbjct: 61  LPPSIIDSIEKTIGNSFSKISNIIVFITSKIVSSFIGLLTSIPYILMLILFTLLSTYFFT 120

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +D    + ++  L  +     +  I     +++    L    +           +++  +
Sbjct: 121 KDITKHNNKISKLIFNEHSYKFSHIYLESKRMLNGYILSYLTLIGITFFETLIIFFIFNI 180

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLR 297
              +   +  AI   +P     +       + I         +  L     +  + + L 
Sbjct: 181 KYSIMFSITAAIADFLPILGIGTIYVPLALIYILVYKNYVVGIGLLISYAAVSTIRQILE 240

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           P L+   + L  +     +  G++  G+ G+F 
Sbjct: 241 PKLLSSSLGLHPISILAAIFIGLKANGISGMFF 273


>gi|150016078|ref|YP_001308332.1| hypothetical protein Cbei_1194 [Clostridium beijerinckii NCIMB
           8052]
 gi|149902543|gb|ABR33376.1| protein of unknown function UPF0118 [Clostridium beijerinckii NCIMB
           8052]
          Length = 322

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/343 (17%), Positives = 127/343 (37%), Gaps = 26/343 (7%)

Query: 1   MRETMLNPQGIMRWMI-MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           M+      + +   ++    +L+  +F+K +F P LS +II     PIY   + K +  S
Sbjct: 1   MKNIFKTYKKLFSLLLSFVFVLIGTFFIKYYFKPFLSMIIIIIVCAPIY-KIMIKAKMPS 59

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                ++ V+V  + I+  ++L       +K+L                +L+++      
Sbjct: 60  KIAGALSIVTVNIIIILVTIYLGSEIFYIIKKL----------------YLTNLEWIEKF 103

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +  +  L+   +   + ++ +       I + A   G   L Y +  I     L    +
Sbjct: 104 IQDISVALNVNFNNLEIGKSVISIINDQNIRKGAVNTGDSVLAYFIGNICAFFILIDKSK 163

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               IS  L       F    +  ++++            I+ I   + +   + + GV 
Sbjct: 164 ILELISMLLPKEMMMKFRDQKENFTQMIGIEG--------ILVIISTMEIIMGFCILGVS 215

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +  ALG++  I+ ++P    I      I   I    F      +   I + ++ + L   
Sbjct: 216 NFFALGIVCGILDILPYVGTIIVFIPIIIYNIIMKNFLTAFGLICLYILVQVIREILEAK 275

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            +G  + +  L     +  GV+  G+LG+ IGP+   L   I 
Sbjct: 276 FLGDKLDMHPLVILLSIYIGVKIFGVLGILIGPMYSILAKEII 318


>gi|262044101|ref|ZP_06017178.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038570|gb|EEW39764.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 298

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 91/298 (30%), Gaps = 22/298 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL +     P+    + +          +   
Sbjct: 12  KMVIMLGMLVIILTGIRFAADIIVPFILALFLAVIINPLVQLLV-RCRVPRVLAISLLIG 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L IV L  L        + L        +    +  WL  +   +   EL      
Sbjct: 71  LIVMLAIVLLASLGTSLNELARTLPQYRNYLYEPMQTIAPWLQRMGFTVSVVELNKYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                             + +    +       +   SI  +++ + F   +   +  +L
Sbjct: 131 ------------------NAVMTLVTSLLTQLSNAMSSIFLLLLTVVFMLLEVPQLPAKL 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L     P       +     +    +  T I++  GLV+     L  V      G++ 
Sbjct: 173 QQL--MSRPVEGMGAIQRAIDSVSHYLVLKTAISLITGLVVWGMLVLLDVRFAFMWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             +  IP    +      I  +L+ G ++ A  +     I   +    L P ++G  +
Sbjct: 231 FALNYIPNIGSVLAAIPPILQVLVFGGLYEALVVLAGYLIVNLVFGNILEPRIMGSGL 288


>gi|308807793|ref|XP_003081207.1| unnamed protein product [Ostreococcus tauri]
 gi|116059669|emb|CAL55376.1| unnamed protein product [Ostreococcus tauri]
          Length = 445

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/324 (14%), Positives = 87/324 (26%), Gaps = 7/324 (2%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA-TVSV 70
           +  +        L  L     P+++A+       P+      K  +  T     A  +  
Sbjct: 74  VVVIASASAYWLLQVLAYLLRPLVTAVGAALLLRPLVDFVSDKGYQRETLRRHRARLLCC 133

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
              F VP +      +     +   ++ A   G          P            +   
Sbjct: 134 GGTFTVPRIVAIVLALAVTCAVFGTLIWALYLGRVYVAVHVKDPAWYARFTSRVNAIGQS 193

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            S                  R  +       D        + A  +       +   L  
Sbjct: 194 MSEAARRIFKKDDIAEQAWDRLQNEIEGALKDAEFWENLGVGAFHYLQDVMLMLFYTLFL 253

Query: 191 LGEHLFPAYWKKIS-RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS--HVALGVI 247
           L      ++ + +  R + K  R     M  IA+   L++G    L  +P    +A+ ++
Sbjct: 254 LLPRRELSFSRSLVVRRIRKATRRFVSIMVQIAMVRALLVGVLLGLCRMPWPLAIAIAIV 313

Query: 248 TAIMAMIPGGAPISFTA---VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           +  +  IP    I  +      I LL                +  F+V   + P +    
Sbjct: 314 SFWLFFIPTLGSIIASILPLPIIVLLPDMTANQRAAGVFIPNLVSFLVGDLIGPVVYRKG 373

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGL 328
           + L  +   F LV      G  G 
Sbjct: 374 LDLNEVTVLFALVFWYSVWGAPGA 397


>gi|182417575|ref|ZP_02948900.1| putative domain of unknown function [Clostridium butyricum 5521]
 gi|237669145|ref|ZP_04529129.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
 gi|182378588|gb|EDT76116.1| putative domain of unknown function [Clostridium butyricum 5521]
 gi|237657493|gb|EEP55049.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
           E BL5262]
          Length = 323

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/335 (13%), Positives = 118/335 (35%), Gaps = 25/335 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +     +++   ++  + +K +F P +  LI+     P+Y   I K +        +  
Sbjct: 9   KKIFSLILLLVFTVIVTFLIKYYFKPFMVILIMSIICMPVYKFII-KLKVPEKLAGAVTL 67

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V  L ++ ++++       ++++ S  +    + I       +I             +
Sbjct: 68  ITVNVLLVLIIVYMGGEIYSILRKVYSSNIEIINNIIQNISSAVNIDLNNLKIGKSVFSI 127

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
            +   L+  + +  ++                     L+     I  FF   D  S+   
Sbjct: 128 INDTKLRQSAVSTGES--------------------ILAYFIANICTFFILVDKKSMLDV 167

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L        +++       +I        I+ +   + +   +++  +P  + LG++
Sbjct: 168 IYRLFPEEIIKKFRRQKNNFVNMIS----IQGILILISTIEIIFGFFILRIPKSLMLGLV 223

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             ++ ++P    I      I   I    +  +   +   I + IV + L    +G  + +
Sbjct: 224 CGLLDVLPYVGTIIVFIPIIIYNIIMKNYLISFGLICLYILVQIVREILEAKFIGNKLDI 283

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L  F  +  G +  G+LG+ +GP+   +   I 
Sbjct: 284 HPLVIFISIYIGAKVFGILGILVGPMYSIIAKEII 318


>gi|57641097|ref|YP_183575.1| hypothetical protein TK1162 [Thermococcus kodakarensis KOD1]
 gi|57159421|dbj|BAD85351.1| hypothetical membrane protein, conserved, DUF20 family
           [Thermococcus kodakarensis KOD1]
          Length = 330

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/353 (12%), Positives = 116/353 (32%), Gaps = 29/353 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     +   + + ++ ++   +    +P++ A    +  +P++     K     + L +
Sbjct: 1   MRVETAVWVAVSLGVLYLTWETISPILSPIIIAATTAYILYPVHERLEGKIGGRWSALTL 60

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              ++V+ L  V    L                        +   +         + +  
Sbjct: 61  TGILTVVSLLFVFGFAL------------------------LINDVKYSLANYVDTFVGW 96

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
               +           +          +   +        L +I  + + +    +  +I
Sbjct: 97  LLGLNLPPSAYEVLQRISLGISQRFNSYVLGYTYSLPTLLLQVIVTVFSFYGILVNADAI 156

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
            Q++ SL         +K+     + +     G  ++ +G+G+++   + + G+      
Sbjct: 157 KQEVYSLIPPTNRDLARKLIDSGAETLHIVLRGWLLVGVGKGILMALFFRVFGISDVGGA 216

Query: 245 GVITAIMAMIPGGAPISFTAVSI----YLLIKGNIFNATCLFLWGAIELF-IVDKTLRPF 299
                +  +I     +    V +    YL+ +G+I +   L + G   +  + D  LR  
Sbjct: 217 VAAGILTVVIELLPVVGGWIVWVGGVAYLINQGHILSGVLLAVLGFSLVSPLPDILLRDK 276

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +      +  + +  G +GG    G +G+ IGPV + L+  + +E     +  
Sbjct: 277 ISRLKWGVNAIISLLGFIGGYIAFGFVGIIIGPVSLGLLKTLVEEWKEIKERT 329


>gi|312137386|ref|YP_004004723.1| hypothetical protein Mfer_1175 [Methanothermus fervidus DSM 2088]
 gi|311225105|gb|ADP77961.1| protein of unknown function UPF0118 [Methanothermus fervidus DSM
           2088]
          Length = 325

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 122/332 (36%), Gaps = 25/332 (7%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
           ++ + ++++S   L   F  ++ + +  + +  + S    KK +  +    I  ++++  
Sbjct: 14  FLTIILVILSFIVLYPLFTTLILSAVFAYGTN-LISKKFEKKVKYKSLSITIGMITIVLP 72

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            +  LLFLFY  +  +  L+                            + +     P  +
Sbjct: 73  ILFVLLFLFYSLLNALPSLIK------------------------VVNVHSIMKYIPFKV 108

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                T L    ++F+  +            + ++  I++ F+  RDG  + Q + S+  
Sbjct: 109 PTDIITDLTHRVVEFVFVYLLELVRSLPTLSIHLLVFIMSTFYLARDGTKLIQYIRSILP 168

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                 + K+ R +   IR+ F G  + A+  G+    AY++ G P    LGVIT    +
Sbjct: 169 KNKVKLFNKMLREIEVTIRAIFYGHFLAALIVGIFATMAYYILGYPFPAILGVITMFTTV 228

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           IP   P           I           +     L  +D  LR  L G   ++  +   
Sbjct: 229 IPVIGPWPVYLSLGIYDIIHGNVIRGVAIIVFGKSLGFLDVYLRTELGGKYAEIHPMLFL 288

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            G +GG    G+ G  +GP+++     I K  
Sbjct: 289 VGFIGGPMIWGIAGFILGPLILCTTHTIIKTY 320


>gi|332157802|ref|YP_004423081.1| hypothetical protein PNA2_0160 [Pyrococcus sp. NA2]
 gi|331033265|gb|AEC51077.1| hypothetical protein PNA2_0160 [Pyrococcus sp. NA2]
          Length = 338

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/353 (13%), Positives = 130/353 (36%), Gaps = 31/353 (8%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   +I+ I+ +    LK    P++  +   + ++P +     +  + ++ L ++  
Sbjct: 7   ERIVWVAIILIILFLVWETLKELITPIVFGITATYLAYPFHVKLSKRFGKRTSILILLIV 66

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           VS++ +     + L          +   +     +      WL  +    + S L+    
Sbjct: 67  VSLLSVMFFIGVAL---------WITDTLKNLYSYLDAFFSWLGSLKVPGFLSSLF---- 113

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                        + T+  + +     ++ +    + L +I  +   +    +   ++++
Sbjct: 114 -----------DAMATSFPEKLRSILLQYTLSLPKFALQLIVFLAVFYASLSNADFLAKE 162

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH---VAL 244
           +  L         +K+   V   I +        +I +G  L   +++ G+ +    +A 
Sbjct: 163 IYELIPLSNRELGEKLIDKVKDTIDAIIKTWLFFSIIKGTFLALGFYVFGISNVAGSIAA 222

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGG 303
           GV+  I+ ++P             LL+K ++  A    ++G + +  + D  ++P     
Sbjct: 223 GVLCVILELLPVVGGWMMWLAGAVLLLKRSLVLAILFSIYGIMTISPLPDYIIKPK---K 279

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
             K+  +    G+ GG    G++G+ +GP+ + L+  +             K+
Sbjct: 280 KAKVSSVVALVGIFGGWIAFGVVGIILGPIAIGLLLALIDAWREISTRQPSKV 332


>gi|82545837|ref|YP_409784.1| hypothetical protein SBO_3471 [Shigella boydii Sb227]
 gi|81247248|gb|ABB67956.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 305

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 90/286 (31%), Gaps = 22/286 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +    + ++  V 
Sbjct: 40  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVTITIVVVVM 99

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++      L  L         E +S +   N+        L ++   +       + L  
Sbjct: 100 LIA-----LTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 154

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 155 MDSEKVVTFTTALMIGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 214

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 215 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 258

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           ++  +P     IS     I +L+   ++    +     +   ++D 
Sbjct: 259 LLNYVPNIGAVISAVPPMIQVLLFNGVYACILVGALFLVVHMVIDH 304


>gi|87124279|ref|ZP_01080128.1| hypothetical protein RS9917_11735 [Synechococcus sp. RS9917]
 gi|86167851|gb|EAQ69109.1| hypothetical protein RS9917_11735 [Synechococcus sp. RS9917]
          Length = 332

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/305 (8%), Positives = 83/305 (27%), Gaps = 18/305 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     +  A+++           +           ++    +     + +  L   
Sbjct: 20  WELRWVLLVLFGAVVLAVALDVPIGKLM-HLGLPRHLALLVVLAVMTLGGALVIQLLVPE 78

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++++L S           +      +                   L+         +
Sbjct: 79  LLTQLQQLTSLAPSLFDKLKSMVASQPQL-----------------SELERSLPDQFSWD 121

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +            +  + ++ M +       D  +  + + ++          ++ 
Sbjct: 122 RIQPVGVQLLGVAGGAANSVIQLLLMSLLAILMALDPGAHRRMVVAVTPRPARPMMNRVL 181

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                 +     GMT+ A    L+      L   P  +   ++  +   +P   P + T 
Sbjct: 182 DRCRTALGGWLAGMTLSATAVFLLTWLGLALLKAPLALLSALVCGLFTFVPTIGPTAATL 241

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + + L +  +      + +   +   +    L P L+   + L         +     +G
Sbjct: 242 LPMGLALLISPTLTVQVLVLRLVLQNLEAFVLTPVLLSRTVNLLPTVALMAQLSLGALLG 301

Query: 325 LLGLF 329
           L G+ 
Sbjct: 302 LPGVL 306


>gi|261885879|ref|ZP_06009918.1| acid membrane antigen A [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 281

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 83/241 (34%), Gaps = 10/241 (4%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               +  +L          +K L         I  +  +A        ++ + I F+++ 
Sbjct: 28  YIKNFDLKLPQALSFLEPKIKELIAGIDLPTLIRKVLSYAKGSLEKSANFLIDISFIMLF 87

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
           LFF +         +  +   +     + I   V   +   F       I +G +     
Sbjct: 88  LFFSHFYANFFKSYIKKVSP-IAKYELEAIFSEVANTMSVVFYSTIANMILQGFLFAIIA 146

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIV 292
              G    +   +      +   G  + +  +S++    G+   A  + ++  + +  + 
Sbjct: 147 SFYGFDGLLFGVLFAFSSLIPVVGGALVYIPLSVFEFSLGDTKAAIIILVYSIVVISTLA 206

Query: 293 DKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           D  ++P         L+  P K+  L  FF ++ G+ + G  G+ +GP ++ L++   + 
Sbjct: 207 DNFVKPLVIKFINEKLLKTPAKMNELLIFFSMLAGLSSFGFWGIVLGPAIVTLLSATLRV 266

Query: 345 S 345
            
Sbjct: 267 Y 267


>gi|170017118|ref|YP_001728037.1| permease [Leuconostoc citreum KM20]
 gi|169803975|gb|ACA82593.1| Predicted permease [Leuconostoc citreum KM20]
          Length = 331

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 101/338 (29%), Gaps = 21/338 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            +   R+ ++ +I++ +  LK F   +L  +I  + +             S +    +  
Sbjct: 9   NRRFYRYFVLSVIILLIVLLKQFMTLLLLTIIFSYLAMNAGKRVQRVTRLSRSLSIALVY 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           + VM   I  +         ++K ++     ++ H   + + +         S    + +
Sbjct: 69  IVVMAFIIWAVEHGANTVAHQVKSMIHLATDSSWHTTGIFKEVYKNIQQYSNSLNTEQLI 128

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   +        L    +  +  F        L              FF          
Sbjct: 129 SKGFTQLNQVGHVLYELILALLFSFIFSMTYPQLRSWSMTFIHSPYKRFFGEFY------ 182

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
                          I      ++   F    +I +   + +         P  +   ++
Sbjct: 183 --------------IIVHRFIIILGRLFEVQLMICVINTIAMVIVLTFLNFPYLIGFAIL 228

Query: 248 TAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
             I+ +IP    +     +++   I G+      + +  A+  F+    L P  +     
Sbjct: 229 IFILGLIPVVGVLISLVPLTVTAFIIGDWHTVLVILVAVAVIHFMESYFLHPHFMSQRTH 288

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           +P L     L+   +  G+ GL IG  ++  +   ++ 
Sbjct: 289 MPILVILLNLIIMEKVFGVWGLIIGLPILTFLLDFFRI 326


>gi|73971940|ref|XP_855287.1| PREDICTED: similar to CG2698-PA [Canis familiaris]
          Length = 950

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 15/251 (5%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF----- 156
           H      WL DI      +    +++    S+       +  N         +       
Sbjct: 659 HINRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 718

Query: 157 -GMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVI 211
            G   L++ LS+I  +  LF+         +    + SL     P     I    V + I
Sbjct: 719 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 778

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 779 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 838

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 839 LTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 895

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 896 IGPILLCILVV 906


>gi|205374233|ref|ZP_03227032.1| permease [Bacillus coahuilensis m4-4]
          Length = 139

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 56/137 (40%)

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA 278
            ++ +  G     A+WL G+   + LG + A+  +IP   P+     ++ +    ++   
Sbjct: 1   MLVCLILGGCAFVAFWLIGLKYPLLLGAVVAVTNIIPYFGPLVGAVPAVIIASTISVNMI 60

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             +     +  F+    L P +VG  + L  L     LV G    G++GL     ++A++
Sbjct: 61  LFVGGIILLLQFLEGNILSPLIVGRSLHLHPLFIMGALVIGGELGGVIGLIFAVPVLAIV 120

Query: 339 AVIWKESIMAIKENKEK 355
                +     K+  E+
Sbjct: 121 KTAILQGRHHFKQKSEE 137


>gi|18977478|ref|NP_578835.1| hypothetical protein PF1106 [Pyrococcus furiosus DSM 3638]
 gi|18893179|gb|AAL81230.1| hypothetical protein PF1106 [Pyrococcus furiosus DSM 3638]
          Length = 326

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 60/349 (17%), Positives = 126/349 (36%), Gaps = 33/349 (9%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +   +   I+++    +K FF+    A +  +   P+++    +  E     A++    
Sbjct: 5   IVFGALGAVILILVSLTVKPFFSSFFFAFVTAYVLSPLHTKLSGRFGERQ--SALLLIFV 62

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++   +V ++ L Y     + +    +   +      P                      
Sbjct: 63  LLAGAVVLMIILIYTLNPVLNQAYVYLQDIDSLISRAP------------------LPKS 104

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +     L     ++I  F        L     + F+   L           + + 
Sbjct: 105 ISDAFLGIYHQLAPRVQEYILSFTFSIPKYILQVAAYLAFVYYFLLH--------EKDIA 156

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV---PSHVALGV 246
            L         KKI       +++      ++ I +G+++   + +  V   P+ +  G+
Sbjct: 157 KLIPFESDEKMKKILYRGNLTLQALIKAWLLLNIAKGILMTIGFIIFDVSSLPTAILAGI 216

Query: 247 ITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGP 304
           +T + + IP     + + A SIYLL  G+   A  L  +GA  +  + D T+RP +V   
Sbjct: 217 VTILFSFIPLFEGWMVWLAGSIYLLNSGHFIRAILLAAYGAALVSPLPDFTIRPKIVAKE 276

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            K        G++GGV  MGL GL IGP+++ +   + +E     +  +
Sbjct: 277 AKFDETLVLIGMIGGVWAMGLKGLIIGPIVLNVAVEMLREWQKLNRARE 325


>gi|307352761|ref|YP_003893812.1| hypothetical protein Mpet_0600 [Methanoplanus petrolearius DSM
           11571]
 gi|307155994|gb|ADN35374.1| protein of unknown function UPF0118 [Methanoplanus petrolearius DSM
           11571]
          Length = 346

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/332 (14%), Positives = 113/332 (34%), Gaps = 20/332 (6%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           + + ++         ++ A        P         +  +   A I T  V    +V  
Sbjct: 19  VAVSAIAVFSTLIGVLIVAAAFAIVLMPAQRYLG--LKMRAGISAAIITTLVAVFIVVAF 76

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
                  + +    ++ +                     W + L     +   S      
Sbjct: 77  YVTAVVIINDSGFFLNMIESITA----------------WLNSLLFNIKAEEISGTFAVS 120

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           + +    ++    ++     +     +    + ++++ F   G +I     S+       
Sbjct: 121 SDVFLEILEKTEDWSLELLSMAPQIIMKTFILFLSMYLFLVLGDNIHLDFISIMPRSVMP 180

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             K   + +  ++ + F    ++A    +     +++ G    +   V++ ++A+IP   
Sbjct: 181 SIKIFEKSIVDMLYAVFNVHIVVAFIVFIASFPVFYILGYDHILFFAVLSTVLALIPVLG 240

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGA--IELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
           P+   A      I  + +    + +  A  +   I D  +RPFL+G   K+  +  F   
Sbjct: 241 PVVMIAFLALYAISISDWQGLIIIIAIAWPLLCAIPDWWIRPFLMGKRTKISGVIMFIAF 300

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
            GG+  MG++G  IGPV++AL+   ++  I  
Sbjct: 301 FGGIMAMGVVGFIIGPVIVALVIACYRIIIAG 332


>gi|147920906|ref|YP_685287.1| hypothetical protein RCIX547 [uncultured methanogenic archaeon
           RC-I]
 gi|110620683|emb|CAJ35961.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 385

 Score = 70.8 bits (172), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 116/358 (32%), Gaps = 29/358 (8%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           ++ L+ F    +  + + + + PI        + +   L  ++ + +    I+ + +   
Sbjct: 25  VWILRPFLDVFVYGIFVYYITRPIKQWLSRYIK-NEGILVSVSLLMLALPLIILIAYTLL 83

Query: 84  YGMLEMKELVSKVVLANQH----GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            GM ++  +V+   L           +    S +   + +     + ++           
Sbjct: 84  VGMSQLMAVVNSYGLTAALPSGPLTNMTTSFSQLHSNLTSGNFTLESVTDITRQDWYKTI 143

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              +  +  +   A   G   +D    +  + +  F+  ++   + +        L   +
Sbjct: 144 SGYSGNLPLLQAIAFSTGSTIVDIAFKLFIIFLVGFYMLKEDAHMQRWFAGTFPKLMDEH 203

Query: 200 WKKISRIVPKVI------------RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
            + + R    V                F  +    + EGL + +      +PS + LG++
Sbjct: 204 NRLLPRYASAVDADLQKLFFGNLLSIVFFAIIAAVVFEGLSIFAPVPSLQIPSPILLGIL 263

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNA----------TCLFLWGAIELFIVDKTLR 297
             + A+IP              L+  ++               +       L I    ++
Sbjct: 264 CGVSALIPIVGMWLVAGPLFLYLLISSLIAGTLFTHFGYFLFMVLAIFVFVLTIPSFVIQ 323

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           PF+  G +        F  V G    G+ GLF+G +++ L+   +   +  +    ++
Sbjct: 324 PFMARGQV--HSGLLMFAYVLGPLVFGISGLFLGAIVLVLVTHYFGIVVPEMAAEGQE 379


>gi|242310532|ref|ZP_04809687.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239522930|gb|EEQ62796.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 353

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 61/357 (17%), Positives = 137/357 (38%), Gaps = 16/357 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFL--KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           M N +G   +++ FI+ +         F   +L A ++   +  I+   + K + S  F 
Sbjct: 1   MSNSKGSYFFLVAFILTLLALLKLYSPFLMNLLIAFLLFIATQSIFQIILKKIK-SEFFS 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           +++ T+ ++ L  +P+ ++          +        Q+   + +         +   L
Sbjct: 60  SLLMTLLLLLLCFMPIFYVAINLASFATNVDLN---GFQNIFALMQQKLINFSRQFFDYL 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +      +SL +   +      +  I  F ++     + +    +F+++ LFFFY  G 
Sbjct: 117 PSAVQQEVESLLLRINSIDWAEIVKKILGFIAKLSANSIYFVSDAVFIVVFLFFFYFYGN 176

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +    +         K +   V  VI   F    +  + +G++ G      G  + +
Sbjct: 177 KLGKYFIEVIPID-KQQIKSLYDEVSAVISVVFYSSILSMVLQGMLFGILMAFYGYNAIL 235

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLV 301
                     +   G  + +  V+ Y L  GN  NA  + L+  I +  I D  ++PF++
Sbjct: 236 LGVFYGFASLIPVVGGTLVWLPVACYELYLGNFTNAIIITLYSIIVIATIADNGVKPFII 295

Query: 302 G--------GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
                     P+K+  +  FF ++ G+ + G  G+ +GP + AL   + +      +
Sbjct: 296 AFINRVLIEEPVKINEMLIFFAIIAGLSSFGFWGIVLGPAITALFIAMLRIYQNLYR 352


>gi|297467484|ref|XP_599430.5| PREDICTED: chromosome 9 open reading frame 5-like isoform 2 [Bos
           taurus]
 gi|297478245|ref|XP_002689957.1| PREDICTED: chromosome 9 open reading frame 5-like [Bos taurus]
 gi|296484392|gb|DAA26507.1| chromosome 9 open reading frame 5-like [Bos taurus]
          Length = 863

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 86/251 (34%), Gaps = 15/251 (5%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG------IDFIPRFASR 155
           H      WL DI      +    +++    S+       +  N       I  +      
Sbjct: 586 HISRQNSWLGDILDWQDIASFVHENIETFLSILESLWVVMSRNVSLLFSTITTLLTILFY 645

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVI 211
            G   L++ LS+I  +  LF+         +    + SL     P     I    V + I
Sbjct: 646 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 705

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 706 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 765

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 766 LTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 822

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 823 IGPILLCILVV 833


>gi|15964491|ref|NP_384844.1| putative permease protein [Sinorhizobium meliloti 1021]
 gi|307308434|ref|ZP_07588138.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
 gi|307318997|ref|ZP_07598428.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|15073668|emb|CAC45310.1| Putative permease [Sinorhizobium meliloti 1021]
 gi|306895411|gb|EFN26166.1| protein of unknown function UPF0118 [Sinorhizobium meliloti AK83]
 gi|306901037|gb|EFN31645.1| protein of unknown function UPF0118 [Sinorhizobium meliloti BL225C]
          Length = 376

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/341 (10%), Positives = 103/341 (30%), Gaps = 17/341 (4%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + +      +Y ++    P+  A++IG           ++      F  ++  +  +   
Sbjct: 48  LFVIACAAVVYTMEAILLPITLAVVIGIVLGRAADEL-ARFGLPPMFGGLLLALCFLLGL 106

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              +  + +      +E    V    +  +P  +              W        S +
Sbjct: 107 SYLVNAILWPITEVAREAPRLVEGLMERILPYLQRF-----------EWVNVALARGSGE 155

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +  N    I   A+      +   + +  +++ L    +   +I   + +    
Sbjct: 156 EAFADVIVKNAGPLIGGAAASLTPALVQTLIFLAALVLFLLGRVQLRSTI---ILAFPSR 212

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
                  ++   +   +   F   ++I +  G +      + G+      G+   + + I
Sbjct: 213 EGRLSAIRVMNALEDALTQYFSTASLIYLALGFITMVIALVGGLAMPPLWGLFAFVSSFI 272

Query: 255 PGGAPISFTA--VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           P       T   V   L+    +  A    +        ++  L P ++G    +     
Sbjct: 273 PYLGVTFMTLSLVVGGLMTHDALIVAIAPAVAFFTVHLAMENLLVPAILGQRFDINPFLV 332

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           F  ++      G +G  +   L  +  +I+++ ++   E +
Sbjct: 333 FVAIIFWTWMWGAVGALLAFPLSLIAMIIFEQILLPQPERQ 373


>gi|218675706|gb|AAI69219.2| hypothetical protein LOC23731 isoform 1 [synthetic construct]
          Length = 391

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 100 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 159

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 160 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 219

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 220 RGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 279

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 280 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 336

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 337 IGPILLCILVV 347


>gi|302875978|ref|YP_003844611.1| hypothetical protein Clocel_3161 [Clostridium cellulovorans 743B]
 gi|307686694|ref|ZP_07629140.1| hypothetical protein Ccel74_00981 [Clostridium cellulovorans 743B]
 gi|302578835|gb|ADL52847.1| protein of unknown function UPF0118 [Clostridium cellulovorans
           743B]
          Length = 307

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 104/328 (31%), Gaps = 28/328 (8%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           V+   I  +  + +     SK     T + ++  V ++ L    +       + E++ + 
Sbjct: 4   VIFTFIFSYLMYNLQKHIASKLHLPRTVVIIVLYVVIIGLMGFIIFRYTPEIIEEVQIIY 63

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            ++                               S  + ++ L++    +   +      
Sbjct: 64  GEISKI------------------------EIPDSWSEYIEFLTKQINISKSYETFMNTV 99

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI---SRIVPKV 210
              G   L   L+++  +I    F  D   + + L           + ++          
Sbjct: 100 VITGKALLKGSLNLLISLILSMLFVLDIERVKKFLYKFKASKVSRIYNRLEYFGTNFINS 159

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYL 269
                    +IA+   ++   A W+ G P  + LG +  +++ IP    I     +S+  
Sbjct: 160 FGKVIQAQFLIALVNSILSIIALWIMGFPQLIGLGFMIFVLSFIPVAGVIISLIPLSLIA 219

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              G +     + +  A+        L P L+     LP    F  L+ G   MG+ GL 
Sbjct: 220 FKIGGVTKLISVIIMIALLHSFESYVLNPKLISDKTSLPIFFIFAILILGKEFMGMWGLL 279

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKIS 357
           +G  L   I  I    I+   +  + + 
Sbjct: 280 LGIPLFIFILDILDVKIVEDSKKIKNVD 307


>gi|313124985|ref|YP_004035249.1| permease [Halogeometricum borinquense DSM 11551]
 gi|312291350|gb|ADQ65810.1| predicted permease [Halogeometricum borinquense DSM 11551]
          Length = 333

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/338 (13%), Positives = 116/338 (34%), Gaps = 29/338 (8%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  + +   + +   + + + L+     V  ++ + +  WP+  + + +         + 
Sbjct: 3   LERRYVFGSLFVLAGVAAAFLLRSVLGTVFFSVTVAYLLWPVRQAVVRRGWSPRAASGLA 62

Query: 66  ATVSVMCLFIV--PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
              + + +     PL  + Y     +  LV  +                           
Sbjct: 63  TAGAFLAVLAGLTPLAIVVYLRFDSLTTLVGLLPS------------------------- 97

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                       L+   + T  + ++ + A+          + +   +  ++     G  
Sbjct: 98  NLSFELFGMTYALTLAEVTTFTVAYLRQLATVVAAATPVLLVKVTLFVFLVYSLLYHGED 157

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             Q   ++    + +  + ++      + + ++     A G  ++    ++  G  + V 
Sbjct: 158 AQQAALAVVPSSYQSAARALNSRARDTLFAIYVLQAATAAGTFVLAVPVFFFLGYDAVVT 217

Query: 244 LGVITAIMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRPFLV 301
           L  + A++  +P   P +    ++ Y L  G+   A  +  + GA+  ++ D  +RP L 
Sbjct: 218 LATVAAVLQFVPIVGPTLLLLGLAAYQLALGHTVQALLVVTVGGALVAWLPDVLIRPPLA 277

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                +P    F G  GG  T+G +G+  GP+++ L  
Sbjct: 278 KQTADIPGSLYFVGFFGGTLTLGAVGIVAGPLVVGLFV 315


>gi|229099866|ref|ZP_04230790.1| hypothetical protein bcere0020_50840 [Bacillus cereus Rock3-29]
 gi|229118928|ref|ZP_04248275.1| hypothetical protein bcere0017_51920 [Bacillus cereus Rock1-3]
 gi|228664584|gb|EEL20079.1| hypothetical protein bcere0017_51920 [Bacillus cereus Rock1-3]
 gi|228683612|gb|EEL37566.1| hypothetical protein bcere0020_50840 [Bacillus cereus Rock3-29]
          Length = 274

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 86/268 (32%), Gaps = 5/268 (1%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L   + +       +    +        SEL    ++    +++        + +  
Sbjct: 7   AITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHMELSKYVGQGVDILYK 66

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                 +FG+  L   +  +F ++             +   ++  H      +   +   
Sbjct: 67  SITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYHEI----EYFGKKFA 122

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSI 267
           +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     + +
Sbjct: 123 RSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFPLCM 182

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                G I     + +   +   +    L P  +     LP   TF  L+     +G+ G
Sbjct: 183 IAYNIGGIMYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWG 242

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEK 355
           L IG  +   +  +   +   ++ + EK
Sbjct: 243 LIIGIPIFIFLLDVLDVTSDEMERDIEK 270


>gi|123239764|emb|CAM24770.1| likely ortholog of H. sapiens chromosome 9 open reading frame 5
           (C9orf5) [Mus musculus]
          Length = 471

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 15/251 (5%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF----- 156
           H      WL DI      +    +++    S+       +  N         +       
Sbjct: 180 HVSRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 239

Query: 157 -GMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVI 211
            G   L++ LS+I  +  LF+         +    + SL     P     I    V + I
Sbjct: 240 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 299

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 300 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 359

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 360 LTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 416

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 417 IGPILLCILVV 427


>gi|282163180|ref|YP_003355565.1| hypothetical protein MCP_0510 [Methanocella paludicola SANAE]
 gi|282155494|dbj|BAI60582.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 350

 Score = 70.4 bits (171), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 19/313 (6%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
           + PI        + S        T  ++   I  + +     + E + +           
Sbjct: 53  TRPIKIFLDRYTKYSPYIA----TFCILLPLIAIIAYGVVSVLGEAEWVFQHSGELGDMI 108

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           I     L          +   K L       + S                 R     +  
Sbjct: 109 IGTIEGLGLPFDVNAGLDTGLKGLYDYTITFLKSLP-------------IGRTFSGIISL 155

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            ++ +  +   F+  +DG S +  +  +                 +++   F G    A+
Sbjct: 156 AMNALVSLFVCFYLLKDGGSFTAIVREVVPARHKPALDMFLTEADRILSGIFTGTFYTAL 215

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLF 282
              +     + + G+P    L     I AM+P     + F  V+IYL +  +        
Sbjct: 216 YIAVGALVLFVIFGIPYKALLTAFVFIAAMVPILSGMMVFIPVAIYLYMFRSPIIGLLFL 275

Query: 283 LWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
               + +++  D  +RP+++     L  L      +GG    GL G F  P+ + L   +
Sbjct: 276 GLAVVFIYLPPDYVIRPYIINRASNLHPLLIILAFIGGGVAGGLSGFFAAPMAIGLATAL 335

Query: 342 WKESIMAIKENKE 354
           ++        +++
Sbjct: 336 YRTYKKTKGNDED 348


>gi|14520804|ref|NP_126279.1| hypothetical protein PAB1962 [Pyrococcus abyssi GE5]
 gi|5458020|emb|CAB49510.1| Putative permease [Pyrococcus abyssi GE5]
          Length = 343

 Score = 70.4 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/343 (12%), Positives = 118/343 (34%), Gaps = 28/343 (8%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            +    LK   +P++  +   + ++P +     K  +  + L + A +++  +     + 
Sbjct: 22  FLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLAIFTILFFIGVT 81

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          +   +     +      WL  +    + S ++                 
Sbjct: 82  L---------WITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIF---------------DA 117

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + T+    +     ++ +      L +I  +   +    +   +++++  L         
Sbjct: 118 MATSFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELG 177

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA---GVPSHVALGVITAIMAMIPGG 257
           +K+   V   + +        +I +G+ L   ++L     V   +A GV+  I+ ++P  
Sbjct: 178 EKLIEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVV 237

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGGPIKLPFLPTFFGL 316
                      +L K +   A    ++G + +  + D TL+     G   +  +    G+
Sbjct: 238 GGWIMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGI 297

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GG+   G +G+ +GP+ + L+  +         +   K   +
Sbjct: 298 FGGLIAFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHS 340


>gi|55378747|ref|YP_136597.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55231472|gb|AAV46891.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 394

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 112/365 (30%), Gaps = 28/365 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL----- 62
            + ++    + ++LV    L  F   ++  + + + S PIY          S        
Sbjct: 9   RRVLLTLAGVALLLVVGLVLSQFLPTLVFTVFLYYASRPIYRRLGRLPLPKSFLKRAVPY 68

Query: 63  -----AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
                A       +  F+V + +     + E++    +  L   +           P G 
Sbjct: 69  QKQVHAAATIFFFLLPFVVLVGYTLVLVIPELQSFFGEGGLGAAYLSQFQELQGGSPPGP 128

Query: 118 WASELWTKHLSH-PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
            A   +++ L+  P  +  L       + +  +         +     L +  M    ++
Sbjct: 129 LADLGFSEVLAMGPAEVIDLLRNATVQSWLGRVSDTLIGSLSLLTSLLLRVFIMFAGTYY 188

Query: 177 FYRDGFSISQQLDS------LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
              DG  +            +      A  +++S I+   I +  +   I      L   
Sbjct: 189 LLTDGPRLVGWFLDTFDGSGVLREYAAAVDEELSSILFGNILNALVTGVIGIFVFSLYNL 248

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL- 289
            A     +P    +G +T I ++IP             LL    +       L       
Sbjct: 249 VAPGSVQIPFAPLVGALTGIGSLIPVVGMKIVYLPVAVLLAVSAVVTGQTAALAWVALFL 308

Query: 290 --------FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                    I D  +RP++ G           F  + G    G  G+F+GP+L+ L A  
Sbjct: 309 VVTLVVVDTIPDFLIRPYVSGDLT--HVGLLMFAYILGPIAFGFYGIFLGPMLLVLAAQF 366

Query: 342 WKESI 346
           ++  +
Sbjct: 367 FRIIV 371


>gi|33240220|ref|NP_875162.1| hypothetical protein Pro0770 [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237747|gb|AAP99814.1| Uncharacterized conserved membrane protein [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 325

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 92/280 (32%), Gaps = 3/280 (1%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           I     +          +I  VSV+ +  + L+ +      E ++L+ ++  + +    +
Sbjct: 6   ITGKIKNILPVKREICLLITLVSVLLILSLSLVIVIPQFTQEFQQLIIQLPSSAKALWGI 65

Query: 107 PRWLSDIPGGMWASE---LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                +    ++  E   L +      + L  L +     NGI    +            
Sbjct: 66  ITVAIEKITKIFYGENASLLSSEGLVFKDLAPLPDGVALANGITDSLKRLLDIAGDLGAG 125

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +  IF++           S  + +  L   L+    +KI       + +  +G+ I + 
Sbjct: 126 IVQTIFVLSIGLMIAVQPDSYKEIIIQLTPSLYRKRARKILAKCGNALSNWMVGVIISSS 185

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
              L+ G + +L G+   VA  +I   + +IP   P   T   I + +    + +  + +
Sbjct: 186 FVALLAGLSLYLLGIKLVVANALIAGALNIIPNIGPTISTIFPISVALLDAPWKSIAILV 245

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
                  +    + P ++   +KL    T           
Sbjct: 246 SYITIQNLESYLITPSVMHSRVKLLPALTLTAQFIFTVIF 285


>gi|307353307|ref|YP_003894358.1| hypothetical protein Mpet_1154 [Methanoplanus petrolearius DSM
           11571]
 gi|307156540|gb|ADN35920.1| protein of unknown function UPF0118 [Methanoplanus petrolearius DSM
           11571]
          Length = 349

 Score = 70.0 bits (170), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/334 (12%), Positives = 115/334 (34%), Gaps = 22/334 (6%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++   ++F+IL+ +     F   +L ++I+     PI           +    +++   +
Sbjct: 14  LLSIALLFVILIGMKSAAYFINIMLISVILTLLGIPIMKRL-----NKAGLSDILSVTII 68

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + ++IV +L   +     +   +S++             L DI                 
Sbjct: 69  IIIYIVCILGFVFLIYESLYVFISRLPEYEYLLTERLSELLDIL--------------AR 114

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            ++       +     + I +             + + F+++   F   +   +  +++ 
Sbjct: 115 FNISGDMVASVLKPDWNAISKMLLEVVAGGSMLAMDLFFILVITCFALLEVHKMPGRIEK 174

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +          +  +++   I    +  T   +  G   G   ++ G+   V  G++  I
Sbjct: 175 VYGEGSGKV--ENVKVIISNIIKWLVVKTKTNVVLGASFGGMLYILGIDMAVFWGLMAII 232

Query: 251 MAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           ++ IP    I  +  +I+L      ++ A  + +   I   +V+  +         ++P 
Sbjct: 233 LSYIPYVGLIIVSIPAIFLAWLQLGVWGAVVVIVGICIINAVVENFVFSKFAADSFQIPP 292

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           L     ++     +G +GLF+      +I  + +
Sbjct: 293 LIVIVTIILWSWILGPVGLFLSVPFTVIIIALLQ 326


>gi|116618882|ref|YP_819253.1| permease [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097729|gb|ABJ62880.1| Predicted permease [Leuconostoc mesenteroides subsp. mesenteroides
           ATCC 8293]
          Length = 331

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 98/330 (29%), Gaps = 21/330 (6%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  I++ ++ LK F + +L  +I  + +  +        + S      +  +  + +  
Sbjct: 17  VLLAIILLIFALKQFMSLLLLTIIFSYLAMSVAKPLAHFLKISRVLSIALVYIIFISVVS 76

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +       + ++K +++  +  N     + + +        +       +S   S   
Sbjct: 77  LAIQHGAATLIEQIKSMITLAMNWNWQDNALLQDVYKNVNQYTSMFNSKDLISESLSQLN 136

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                +    +  +  F        L              FF                  
Sbjct: 137 HIGHVIYQLVLALLFSFIFSMTYPKLRLWSMNFLHSPFKKFFGEFY-------------- 182

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                  I      ++   F    II      ++         P  +   ++  ++ +IP
Sbjct: 183 ------IIVHRFIIILGKLFEIQLIICTINTALMFLVLLSLHFPYLLGFTILIFVLGLIP 236

Query: 256 GGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
                IS   ++I   I G+      + +  A+        L P L+     +P L    
Sbjct: 237 VFGVVISLVPLTITAFIIGDWDTVIIIVVAVALIHLFESYFLHPHLMSQKTHMPILIILL 296

Query: 315 GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            L+      G+ GL IG  ++  +   ++ 
Sbjct: 297 NLIIMEHFFGVWGLIIGLPILTFLLDFFQI 326


>gi|145640161|ref|ZP_01795745.1| lipoprotein NlpI [Haemophilus influenzae R3021]
 gi|145274747|gb|EDK14609.1| lipoprotein NlpI [Haemophilus influenzae 22.4-21]
          Length = 184

 Score = 70.0 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 58/185 (31%), Gaps = 3/185 (1%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
               + + +FF  +D   + Q +             K+ + + + I +   G  +  +  
Sbjct: 1   MPFLVPLMMFFMLKDKSELLQGVSRFLP-KNRNLAFKVWKEMQQQISNYIHGKLLEILIV 59

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFL 283
            L+    + + G+   + L     +  ++P    +  T       L   G       + +
Sbjct: 60  TLITYIIFLIFGLNYPLLLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGISPTFWYIII 119

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             A+   +    L P+L    + L  L     ++      G  G+F    L  L+  +  
Sbjct: 120 AFAVSQLLDGNLLVPYLFSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVIN 179

Query: 344 ESIMA 348
                
Sbjct: 180 ALPQD 184


>gi|15643943|ref|NP_228992.1| hypothetical protein TM1187 [Thermotoga maritima MSB8]
 gi|8928512|sp|Q9X0R9|Y1187_THEMA RecName: Full=UPF0118 membrane protein TM_1187
 gi|4981737|gb|AAD36262.1|AE001775_5 conserved hypothetical protein [Thermotoga maritima MSB8]
          Length = 324

 Score = 69.6 bits (169), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 91/320 (28%), Gaps = 24/320 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               ++  L +      +        ++      VI+ V V        +  F   + E 
Sbjct: 27  IITALIMGLYLSIIIDYVARFLEVFIKKPRVLPRVISNVLVFLTIAYSAVNFFPVIVREA 86

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +++ S++         +                                + +  +  +  
Sbjct: 87  QKVFSEIDRIRSGLENI----------------------DIPGWLSSILSSISASFSEGA 124

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               ++       +  + I ++I  F        I + +  L     P+  K+  +    
Sbjct: 125 LSLVNKIVGYVPSFITAAILIVITAFIVSSLKRLIKENVHYLFPT-NPSDGKEFLKTTYT 183

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIY 268
                  G  ++AI  GL +G   ++  +PS   LG++  +   +P     IS   + + 
Sbjct: 184 EFERFVGGQVLVAIFVGLFVGFGAFIFKIPSAFFLGMLAFVTDFVPYLGVVISAIPLLML 243

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                 +       +       +    L P +    + + +      ++         G+
Sbjct: 244 AFSVHGLSGLLIGTIILVAANQLEMWVLAPKIQSNTLNVHWFIILIMILILGDLFSFGGV 303

Query: 329 FIGPVLMALIAVIWKESIMA 348
            I    +  +   WK+ +M 
Sbjct: 304 LIALPFLIFLKNFWKQYVMG 323


>gi|47077828|dbj|BAD18785.1| unnamed protein product [Homo sapiens]
          Length = 431

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 140 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 199

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 200 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 259

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 260 RGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 319

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 320 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 376

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 377 IGPILLCILVV 387


>gi|194225616|ref|XP_001916341.1| PREDICTED: similar to likely ortholog of H. sapiens chromosome 9
           open reading frame 5 (C9orf5) [Equus caballus]
          Length = 877

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 77/251 (30%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +++        +      S +   +       + L    S  +       T  +  +  
Sbjct: 586 HINRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 645

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 646 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 705

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 706 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAIPAVLDLW 765

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 766 LTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 822

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 823 IGPILLCILVV 833


>gi|194389636|dbj|BAG61779.1| unnamed protein product [Homo sapiens]
          Length = 879

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 588 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 647

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 648 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 707

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 708 RGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 767

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 768 LTQGLGCKAILLLIFHLVPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 824

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 825 IGPILLCILVV 835


>gi|291459199|ref|ZP_06598589.1| putative sporulation integral membrane protein YtvI [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291418453|gb|EFE92172.1| putative sporulation integral membrane protein YtvI [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 369

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 102/298 (34%), Gaps = 7/298 (2%)

Query: 53  SKKEESSTF-----LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 S        + +  + ++ L    L +L   G+  +K L+ ++    Q  +   
Sbjct: 50  RLLNRRSPLMKRQHASAVIMILLLALIGFLLYWLLAAGLHFVKLLLRRLPDMAQWLLTSL 109

Query: 108 RWL--SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
           R L            +   + + +  +        L           +           +
Sbjct: 110 RALAGERRKLLFGMPDQLNRIIDNLIANSDAYGEELIGRLSSPAFSASLDLVKSVPTLLV 169

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
            ++  I++ F F +DG    ++L  L    F  Y+  + +   K++    L    I    
Sbjct: 170 YLVVTILSGFCFCKDGERYLKRLRELLPERFRRYFSLLRQDAWKILHGWLLANLEIMALV 229

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            L+L + ++L  +P  + + +  A +  +P           I L +    F      L  
Sbjct: 230 FLLLSAGFFLLRIPYGILIALFIAFLDFLPLFGVGFILWPWIALELLSQRFMEAFWLLLL 289

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            +   +V + L+P ++G  + LP L T   L  G +  G+ G+     L  L   +++
Sbjct: 290 YLMTQLVRQFLQPKIMGDAMGLPPLLTLLFLYLGFKFYGIGGMIFAIPLGMLFLSLYR 347


>gi|71152403|sp|Q9H330|CI005_HUMAN RecName: Full=Transmembrane protein C9orf5; AltName: Full=Protein
           CG-2
          Length = 911

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 588 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 647

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 648 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 707

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 708 RGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 767

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 768 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 824

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 825 IGPILLCILVV 835


>gi|76802921|ref|YP_331016.1| permease [Natronomonas pharaonis DSM 2160]
 gi|76558786|emb|CAI50379.1| predicted transporter (predicted permease) [Natronomonas pharaonis
           DSM 2160]
          Length = 369

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/326 (13%), Positives = 93/326 (28%), Gaps = 27/326 (8%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
           F A +  A+ + +++   Y+     +        +  +V  + L  + + +      +E 
Sbjct: 26  FIAALTVAVFLYYSTRRFYALLGRLRLPKRIRAVLALSVLGVPLM-LLISYTVILLAVEA 84

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           ++ V +  +       V           W   L          +    +       IDF 
Sbjct: 85  RQFVEEYPVFESAPDDV----------AWFEGLEDLPEPTINGIIQAYQAGDLDIFIDFA 134

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL-----GEHLFPAYWKKIS 204
              A+    +     L+++ +++  ++   DG      L              A   ++ 
Sbjct: 135 VEHAAFLSSLITGLLLNLLIVVVVTYYLLIDGTKARDWLLRFDEDAIVREYLEAVDDELE 194

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            ++   + +  +   I          +      VP     G +T + ++IP         
Sbjct: 195 AVLFGNLLNVIVISLIAVAVFMGYNAAVPAPVEVPYPALAGALTGVASLIPVVGMKIVYL 254

Query: 265 VSIYLLIKGNIFNA---------TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                     + +            L L   +   I D  LRP+  G             
Sbjct: 255 PLAVAAAVPVVLDGPTELLVYIVGFLALAVIVVDTIPDLVLRPYFSGNRT--HVGLLMLA 312

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVI 341
            + G    G  GLF  P+L+ L    
Sbjct: 313 YIFGPVVFGFYGLFFAPILLVLGLTF 338


>gi|223939332|ref|ZP_03631212.1| conserved hypothetical protein [bacterium Ellin514]
 gi|223892045|gb|EEF58526.1| conserved hypothetical protein [bacterium Ellin514]
          Length = 324

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/332 (11%), Positives = 106/332 (31%), Gaps = 27/332 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYF-LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
           M +P       +  ++++ ++  L      VL +L +                    +LA
Sbjct: 1   MTSPTRFSYGFLALLLVLVIWLHLAVPLLAVLFSLFV----------LNKLTFGKHKWLA 50

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  + V+       +      ++   ++             V  W       +  S+  
Sbjct: 51  VVLFILVIAGVSYGAVHFLRAAVVAFPKIAE------TSIPSVLAWAQSRNIELPFSDYS 104

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
           +       +++    +         +   A       +   +  +  I        D   
Sbjct: 105 SLKDLAVDTVREQLHS---------VGTLARGATSHLVFLLIGAVVAISLFLNSQLDLDR 155

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            S ++ +    L      +    + +   +      +I++   L+     ++  +P  + 
Sbjct: 156 HSHRVKNNLYSLCCEAIAERFFALYQSFSTVMGAQIVISLINTLLTTVFVFIVHLPYGLV 215

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +  +T +  ++P    +    + + +    +   A    ++  +   +    L   +VG 
Sbjct: 216 VIGVTFLCGLLPVVGNLISNTIIVGVAFTISPRFAFIALIFLIVVHKLE-YFLNSKIVGD 274

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
            I+ P   T  GL+ G + MGL G+ + PV++
Sbjct: 275 RIRNPVWLTLLGLLIGEKLMGLPGMILAPVIL 306


>gi|118379196|ref|XP_001022765.1| hypothetical protein TTHERM_00630410 [Tetrahymena thermophila]
 gi|89304532|gb|EAS02520.1| hypothetical protein TTHERM_00630410 [Tetrahymena thermophila
           SB210]
          Length = 730

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 81/258 (31%), Gaps = 9/258 (3%)

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
                  V   +  I   +   +     + +       +        I +I +    F  
Sbjct: 380 IISSANEVTAVVCYIQIFIKQMDFNINEILNNLKNVGGNLYQNIQKIIIWIIQSLFTFLF 439

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
             +DY L    + +   F+       S     L   L     KK+   + K IR  F   
Sbjct: 440 SIIDYLLQ-TIIYLTSLFYLLSSPQFSLNKLLLLLPLEGDIKKKLEFSLEKNIRGVFASN 498

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF-- 276
             I+    ++      +  +P      V+  ++A+IP       T      L        
Sbjct: 499 LKISFYHIILTWLMLDIFDLPFSFITSVLAGVLAIIPIIPVYFITIPYCIYLYFSGSILE 558

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A     +  I L  +D      +    I +    T   +  G+    L G+ IGP+++ 
Sbjct: 559 MAILFVGYAHISLLSID-----AIYSKNIAVHPFITGICVAMGLSVFELKGIIIGPLIVC 613

Query: 337 LIAVIWKESIMAIKENKE 354
            +  +  + +  I+E+K+
Sbjct: 614 SVY-LLVDVLGEIQESKK 630


>gi|12002680|gb|AAG43365.1|AF153415_1 chromosome 9 open reading frame 5 [Homo sapiens]
          Length = 911

 Score = 69.6 bits (169), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 588 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 647

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 648 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 707

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 708 RGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 767

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 768 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 824

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 825 IGPILLCILVV 835


>gi|260434824|ref|ZP_05788794.1| hypothetical protein SH8109_1720 [Synechococcus sp. WH 8109]
 gi|260412698|gb|EEX05994.1| hypothetical protein SH8109_1720 [Synechococcus sp. WH 8109]
          Length = 329

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/279 (8%), Positives = 73/279 (26%), Gaps = 21/279 (7%)

Query: 51  FISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL 110
              +               ++    +    L    + + ++L   +         +    
Sbjct: 46  VQKRTPLDRPQALAAVLGILILAGGLLGQLLVPELISQFQQLGRDLPQLVSKVSDLLSSE 105

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             +     A                                    F     +  + +  M
Sbjct: 106 PRLAQLNDALGEGLNLKELQP---------------------LLGFAGGAANSLIQLFLM 144

Query: 171 IIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           ++       D  +  + + ++         + +     + +     GMT+ A    L+  
Sbjct: 145 VLLAILLALDPSAHRRMVVAMTPRPARERMEHLLDECRQALGGWLSGMTLSATTVFLLTW 204

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
              +L   P  +   ++  ++  +P   P + T +   L +  ++     + ++  +   
Sbjct: 205 GGLFLLKAPLALLSALVCGLLTFVPTIGPTAATLLPTGLALLQSLQLMLSVLVFRLVLQN 264

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           +    L P L+   + L         +     +GL G+ 
Sbjct: 265 LEAFLLTPLLLRKTVNLLPTVALTAQLSLGALLGLPGVL 303


>gi|91086043|ref|XP_973506.1| PREDICTED: similar to conserved hypothetical protein [Tribolium
           castaneum]
 gi|270010191|gb|EFA06639.1| hypothetical protein TcasGA2_TC009562 [Tribolium castaneum]
          Length = 903

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 88/264 (33%), Gaps = 13/264 (4%)

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI------DFIPRFA 153
            ++ I   +   ++       +   +++    SL     + +K N               
Sbjct: 633 WENFISDIQRSPEMFNLNGIVDFAKQNVGTLLSLLESVWSIVKGNIGLVLGSFSAFLSVI 692

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
              G   L++ L+ I  +  LF+       + + ++ +    F    ++    +   I  
Sbjct: 693 LGGGTAVLNFILNGIVFLTTLFYLLSSSGDLYKPVELM--TKFSTSGRRFGHALEGAING 750

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI-- 271
            F     +A   G+     + L GV           I+  +P          ++  L   
Sbjct: 751 VFTASFKMAAFYGMWTWFIHNLFGVKIVYLPSAFATILGAVPFLGTYWACFPAVLDLWLA 810

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           +     A    ++  +   IVD T+   + GG        T   + GG+  +G+ G  +G
Sbjct: 811 QDRGIEAIVFAIFQFLPTSIVDTTIYKEIKGGG---HPYLTGLAIAGGIFCLGVEGAIVG 867

Query: 332 PVLMALIAVIWKESIMAIKENKEK 355
           P+L+  + V    S    KE+  +
Sbjct: 868 PLLLCGLYVAIDLSSSLFKESPSE 891


>gi|147920907|ref|YP_685286.1| hypothetical protein RCIX544 [uncultured methanogenic archaeon
           RC-I]
 gi|110620682|emb|CAJ35960.1| conserved hypothetical protein [uncultured methanogenic archaeon
           RC-I]
          Length = 385

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/363 (13%), Positives = 120/363 (33%), Gaps = 27/363 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              + + + L+  + ++ FF  V+  + I + S PI +         +  +    T+ ++
Sbjct: 13  WLLIGIALTLLLFWIMRSFFDIVVYGIFIYYISRPIKNRLSRHIRNETLLVTACLTLLIL 72

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L +V    L       +  +  + +++      +    +                    
Sbjct: 73  PLILVVAYTLLIGMSQLLAVVDDQGLMSAIPAGILANVTASFSSMHSNLSAGRLTEVDLA 132

Query: 132 SLKILSETFLKTNGIDFIP---RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +L         +    ++P   +     G  F+D  L +  + +  ++  +D   + +  
Sbjct: 133 NLTPEQMYQALSGYSGWLPEVEQIIIAAGTTFVDILLRLFLVFVVAYYLLKDDNRLKEWF 192

Query: 189 DSLGEHLFPAYWKKISRIVPKVI---RSTFLGMTIIAIGEGLVLGSAYWLAGV------- 238
            +    L   +     R    V    ++ F G  +  +   +V    + L  V       
Sbjct: 193 CNTFPRLIEEHNGVFIRYCKAVDADLQAIFFGNLLSIVIFSVVAAVVFQLLSVFAPVPSL 252

Query: 239 --PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA----------TCLFLWGA 286
             PS + LG++    A++P        A  +  L  G++               +     
Sbjct: 253 QIPSPILLGILCGASALLPVIGMWLVVAPLLAYLAIGSLMAGTLMPNLAYFLVIVISILL 312

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
               + +  +RP++  G  KL      F    G    G+ GLF+G +++ L+   ++  +
Sbjct: 313 FVQTLPELLIRPYV--GHGKLHIGLLMFAYTLGPIVFGISGLFLGAIVLVLVTHYFRVVV 370

Query: 347 MAI 349
             +
Sbjct: 371 PEM 373


>gi|1074317|pir||E64004 hypothetical protein HI0237 - Haemophilus influenzae (strain Rd
           KW20)
          Length = 218

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 55/191 (28%), Gaps = 8/191 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                +  +   +          +  I               +    + + +FF  +D  
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLV--------SLGIYAFLVPLMMFFMLKDKS 182

Query: 183 SISQQLDSLGE 193
            + Q +     
Sbjct: 183 ELLQGVSRFLP 193


>gi|298717114|ref|YP_003729756.1| hypothetical protein Pvag_pPag30015 [Pantoea vagans C9-1]
 gi|298361303|gb|ADI78084.1| UPF0118 inner membrane protein yhhT [Pantoea vagans C9-1]
          Length = 343

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 49/347 (14%), Positives = 101/347 (29%), Gaps = 21/347 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +     + IIL  LY        VL A ++     P+ +    K+        ++ T+
Sbjct: 14  RVLFILASLTIILTGLYLAAPLINQVLLAALLAIMLDPLITRLDKKRIPRIISSLLVITL 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +M + +  L                           + +     P  + A         
Sbjct: 74  MLMVMVVTTL-------------------KLTALTPDLMQLSRQAPMLLAARLEQLTLAF 114

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
               + +  +  L       I R  + F           I + + L F   +   +   L
Sbjct: 115 ARLDIGMTPDQMLTFVDAGAIVRIVTAFLTQIPGVISWWIMVFLMLLFMLYEMPLLKAAL 174

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                    A++  +   +  VI       T+ +I  G+++G    L G+      GV+ 
Sbjct: 175 QQRVSGKNQAFYLALQEGIESVI-VYARVKTLTSILGGIIVGLGAHLIGLKFAFFWGVLM 233

Query: 249 AIMAMIPGGAPISFTAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
            I   +P           +    I  ++  A  +  +  +    +   + P L+G  + L
Sbjct: 234 FIFNYVPVLGSFLAAIPPVIQSYIMFDLQVALAVSGFFMVLNLCLSSVIEPLLIGKRLNL 293

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
                    +     +G+ G  +   L  LI  +   S        E
Sbjct: 294 ALTTQLLAFLFWQALLGITGGILAIPLTYLIKKVLLASYPQQDPESE 340


>gi|110681719|ref|NP_114401.2| transmembrane protein C9orf5 [Homo sapiens]
 gi|55958884|emb|CAI15128.1| chromosome 9 open reading frame 5 [Homo sapiens]
 gi|55961248|emb|CAI13317.1| chromosome 9 open reading frame 5 [Homo sapiens]
 gi|57160693|emb|CAI39466.1| chromosome 9 open reading frame 5 [Homo sapiens]
 gi|119579442|gb|EAW59038.1| chromosome 9 open reading frame 5, isoform CRA_a [Homo sapiens]
          Length = 879

 Score = 69.2 bits (168), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 588 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 647

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 648 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 707

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 708 RGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 767

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 768 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 824

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 825 IGPILLCILVV 835


>gi|294496279|ref|YP_003542772.1| hypothetical protein Mmah_1631 [Methanohalophilus mahii DSM 5219]
 gi|292667278|gb|ADE37127.1| protein of unknown function UPF0118 [Methanohalophilus mahii DSM
           5219]
          Length = 364

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/340 (15%), Positives = 117/340 (34%), Gaps = 20/340 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +       + L  +  L      ++  L+  +   PIY     K      + A IAT+
Sbjct: 18  KILALLAFFILFLALVKILLPLADGIVLGLVFAYICRPIYDKINKKNH----YGAFIATM 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ +   F     ++  ++       +      R +         ++L      
Sbjct: 74  FIVTPLVIIIGTGFVEIFRQLIWVIENQSQVLEIIFDFIRAILPGTYFERVNQLVWD--- 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   S + L   G      +A   GM  ++        I   +F   +G  +    
Sbjct: 131 -------SSLSILSFAGSLGFVSYAKSLGMFMINLV----VAIFVCYFLLLEGEKLYASA 179

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +          +  R + +++   F+G    A+    +    ++  G+   +AL  + 
Sbjct: 180 VCIAPKGTQLNTGRYLRELDRILSGIFIGNAYAALTVSTISVVVFYAFGLSHILALATLI 239

Query: 249 AIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELFI-VDKTLRPFLVGGPIK 306
            I ++IP     +    +S+   I+     A   F+  +I +++  +  LRP+ V    +
Sbjct: 240 FIASVIPFFAGYMVLLILSVIRYIEMGAEAAIIFFIVSSIVIYVPPELFLRPYFVSMKSQ 299

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +  +      +GG    G+ G F  PVL+  +   ++  I
Sbjct: 300 IHPVVLVVVFLGGGFVGGIAGFFAAPVLLGALVAAYRVYI 339


>gi|149037154|gb|EDL91685.1| similar to chromosome 9 open reading frame 5 (predicted) [Rattus
           norvegicus]
          Length = 789

 Score = 69.2 bits (168), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 85/251 (33%), Gaps = 15/251 (5%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF----- 156
           H      WL DI      +    +++    S+       +  N         +       
Sbjct: 498 HVSRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 557

Query: 157 -GMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVI 211
            G   L++ LS+I  +  LF+         +    + SL     P     I    V + I
Sbjct: 558 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 617

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 618 RGVFDASLKMAGFYGLYTWLTHTVFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 677

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 678 LTQGLGCKAVLLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 734

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 735 IGPILLCILVV 745


>gi|268326230|emb|CBH39818.1| conserved hypothetical membrane protein, DUF20 family [uncultured
           archaeon]
          Length = 354

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/364 (13%), Positives = 121/364 (33%), Gaps = 31/364 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           + + +     + +  I + +Y L  F   ++  + + + + P+Y  F+ + +       +
Sbjct: 3   LRDGKLCWLILGLISIALLVYVLFRFCDVIIYGIFLYYVARPVYRGFVKRYKYERVGAFI 62

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
                V+ L ++ +  L    +   K L         +   + + + +I   +  +++  
Sbjct: 63  SLFFIVLPLVLIGIYTLSTAYIELSKFLGHIDFGYTNYVDEIVKRIKEIASSINMADISN 122

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                 +    ++                S     + D+ L +    +  ++  +DG  +
Sbjct: 123 LITQGDKWSVYITH-----------LSAFSGTMSGYFDFPLKLFLTFVIAYYLLKDGAKL 171

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG------- 237
              +            KK    V   +   + G  + AI   LV    ++L         
Sbjct: 172 MAWITDTFLGGKTELAKKFFDDVDSALYQVYFGNILTAILTALVAVVTFYLLNLIAPPQL 231

Query: 238 -VPSHVALGVITAIMAMIPGGAPISFTAVSIY----------LLIKGNIFNATCLFLWGA 286
            +P  +  G++  I   IP            +          +L+    F    + +   
Sbjct: 232 LIPYPILFGILCGIGIFIPIVGVKLIWVPLTFYLGVQAYLNGILLTSWWFILLFIVVMFL 291

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESI 346
           +   + +  LRP++    +           + GV   G LGLF+GP+++ + A   K  +
Sbjct: 292 VVDSVPEYALRPYISKKYV--HVGALLLAYIFGVCIFGFLGLFLGPMILIIAASFMKIVL 349

Query: 347 MAIK 350
             ++
Sbjct: 350 PELR 353


>gi|148670304|gb|EDL02251.1| RIKEN cDNA D730040F13, isoform CRA_a [Mus musculus]
          Length = 789

 Score = 69.2 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 77/251 (30%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +      S +   +       + L    S  +       T  +  +  
Sbjct: 498 HVSRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 557

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 558 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 617

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 618 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 677

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 678 LTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 734

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 735 IGPILLCILVV 745


>gi|229176114|ref|ZP_04303607.1| hypothetical protein bcere0006_51820 [Bacillus cereus MM3]
 gi|228607349|gb|EEK64678.1| hypothetical protein bcere0006_51820 [Bacillus cereus MM3]
          Length = 271

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 86/268 (32%), Gaps = 5/268 (1%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L   + +       +    +        SEL    ++    +++        + +  
Sbjct: 7   AITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHMELSKYVGQGVDILYK 66

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                 +FG+  L   +  +F ++     +       +   ++         +   +   
Sbjct: 67  SITNVGKFGLQVLLSLILSLFFLLEKARIFAFTAKFKESRLAIFYTEI----EYFGKKFA 122

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSI 267
           +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     + +
Sbjct: 123 RSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFPLCM 182

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                G I     + +   +   +    L P  +     LP   TF  L+     +G+ G
Sbjct: 183 IAYNIGGITYVVYILIIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWG 242

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEK 355
           L IG  +   +  +   +   ++++ E 
Sbjct: 243 LIIGIPIFIFLLDVLDVTSDEMEKDVET 270


>gi|289165205|ref|YP_003455343.1| membrane protein [Legionella longbeachae NSW150]
 gi|288858378|emb|CBJ12246.1| putative membrane protein [Legionella longbeachae NSW150]
          Length = 347

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 62/338 (18%), Positives = 124/338 (36%), Gaps = 16/338 (4%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L+ +       + +    L      F P+L+ALI+  +  P  +     K        ++
Sbjct: 5   LSQKYFYFIANILLTGYILVISAPLFNPLLAALILALSLKPFATFLEKFKVPR-----LL 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A++  +  FI+ L  +  +  ++++ +  K+   +Q+ + +P ++             + 
Sbjct: 60  ASLVSVVTFIIVLAEVILFFQVQIRNIDFKLGHISQNMVSMPTYIQS---------SISN 110

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                Q  +      L T  I       +           SI   IIALFFF        
Sbjct: 111 FFGISQEQQTSLLNELFTIIIKNSTVLFNHTLSFTTSLVASISIFIIALFFFLNYRKFFK 170

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           + L  + +  + +   +I   +  V+     G+ +I +   L+     W  GV   +  G
Sbjct: 171 KFLFKVVKEKYHSNLNRILTRILSVVSRYIFGLLLIILIVALLNTLGLWFLGVEHAILFG 230

Query: 246 VITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           V+ A++ +IP               LL KG+   A  +     I   +    L P +VG 
Sbjct: 231 VLAAVLILIPYIGIFIGSLLPALFVLLTKGSFGYAFAVIFIFIIVQVLEGNFLTPNIVGS 290

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + +       GL+ G   +G+ G+     ++A+  VI
Sbjct: 291 QVSVNPFAVILGLLIGGLLLGITGIMFALPVLAITKVI 328


>gi|282165362|ref|YP_003357747.1| hypothetical protein MCP_2692 [Methanocella paludicola SANAE]
 gi|282157676|dbj|BAI62764.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 380

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/366 (13%), Positives = 118/366 (32%), Gaps = 25/366 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
                  ++L+ L+ +  F   ++ A+ I + + PI        +  +  + V   + V+
Sbjct: 13  WLIFGAALVLLLLWVMWPFLTVIVYAVFIYYIARPIKRMLQPHIKNETLLVTVCMLLLVL 72

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI--PVPRWLSDIPGGMWASELWTKHLSH 129
            L ++    L          +    + +   G    +   +S+I        + + +   
Sbjct: 73  PLLLIIGYTLLLALSQFNALITGIGLQSLPEGPLSNMSNVVSEIQRNFTMENIMSGNFGA 132

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
                +        + I  + +     G   +D    +  +I+ +F+  R+   +   L 
Sbjct: 133 IVPQDLYEALQGYGSSIANLQQLVISTGSTIVDIIFKLFLVIVIVFYMLREDEKLVSWLK 192

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI-----------GEGLVLGSAYWLAGV 238
           S    L   Y   + +    V            +              ++   A     +
Sbjct: 193 STFPSLMAEYDGMLLKYGRAVDEDLEKIFFGNILSIVFFAILAATVFSVLNMFAPPGMSI 252

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA----------TCLFLWGAIE 288
           PS + +G++  + A++P           +  ++  ++               +       
Sbjct: 253 PSPILMGILCGVSALLPVVGMYIVIVPLLLYVLVISLMAGTFFPNIVFYIMMVAAIMIFV 312

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             + D  LRPF+  G +        F  + G    G+ GLFIG +++ L+   ++  + A
Sbjct: 313 EVLPDFVLRPFMSSGRV--HTGLLMFAYILGPIVFGIAGLFIGAIVLVLLTHYFRIVVPA 370

Query: 349 IKENKE 354
           I    E
Sbjct: 371 ISRESE 376


>gi|153845273|ref|ZP_01993756.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149745127|gb|EDM56378.1| hipothetical membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 247

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 4/232 (1%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I  +++ +   ++ F  PV+   II     P+               A    +  + L 
Sbjct: 2   LIFVLLMFTYDIIRPFILPVIWGAIIAVALLPLTKKLQRAYGGRRGLAATTIVLLGIALL 61

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           + PL+ +    +      +  +             ++D P             +      
Sbjct: 62  VTPLVMVSGSIVDGATHALDVLQNGQVKIPGPKASVADWPLVGDKLYEVWTLFATNLEQA 121

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           I +      + +  +           L   L  I  +     F     S++  L ++   
Sbjct: 122 IQTFMPQIKSALTSLLGMVGGV----LGSLLLSILSLAIAAGFMTYSESLASGLQTIAIR 177

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                 K  + ++   I+S  LG+  +A  + L++G+ +         A   
Sbjct: 178 TAGENAKSWTTLIAATIKSVLLGVVGVAAIQALLIGAGFLRLAFKWRAAQST 229


>gi|123228032|emb|CAM27763.1| likely ortholog of H. sapiens chromosome 9 open reading frame 5
           (C9orf5) [Mus musculus]
 gi|123239759|emb|CAM24765.1| likely ortholog of H. sapiens chromosome 9 open reading frame 5
           (C9orf5) [Mus musculus]
          Length = 876

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 77/251 (30%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +      S +   +       + L    S  +       T  +  +  
Sbjct: 585 HVSRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 644

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 645 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 704

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 705 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 764

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 765 LTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 821

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 822 IGPILLCILVV 832


>gi|162447684|ref|YP_001620816.1| integral membrane protein [Acholeplasma laidlawii PG-8A]
 gi|161985791|gb|ABX81440.1| integral membrane protein [Acholeplasma laidlawii PG-8A]
          Length = 355

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/333 (10%), Positives = 100/333 (30%), Gaps = 23/333 (6%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P++ A  + +   P+ +      +       +I    V   F+  +  +    +  + 
Sbjct: 39  LLPLIIAFTLAYILNPLINLLQKY-KIPRWLGILIVYTIVTIFFVYLIWGVLKPAVDSIG 97

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            +   +         +    +          +    +                  I    
Sbjct: 98  NISVGIENIMIEIGDILNVDTTSMSSYIIGLVDEIIIE-----------------ITNFF 140

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             +        +  +S   +I+    F  +   I Q++                R +   
Sbjct: 141 TASGGTVGQVWNTIISGAVVIVVGIIFLLNFPRIRQRIKEYLTITVKPKTVSFVRTLDNE 200

Query: 211 IRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH---VALGVITAIMAMIPGGAPISFTAVSI 267
           + +  +   IIA  + L  G+   +  +      V + ++ A++++IP          + 
Sbjct: 201 LTNYLVAEIIIAAIQALEYGTLMLILSIFFPEFLVFVPLVAAVLSLIPYFGGYFSILFTA 260

Query: 268 YLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +++      +    + ++  I   +    + P +    + L  + T   ++ G    G+
Sbjct: 261 VIVMTVPSAAYGMIAIGIFMLIFPQLDAYVINPKIYQTKLNLNPISTIAFVLLGQAFFGI 320

Query: 326 LGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +G  +      ++ V  +     IK + +KI+ 
Sbjct: 321 IGAILSVPFQVVLEVTMQYYKDNIKSSIKKINE 353


>gi|114626080|ref|XP_001144114.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
          Length = 879

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 588 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 647

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 648 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 707

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 708 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 767

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 768 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 824

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 825 IGPILLCILVV 835


>gi|72535366|gb|AAT67989.2| permease protein [Halobacterium sp. AS7092]
          Length = 322

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 101/298 (33%), Gaps = 29/298 (9%)

Query: 46  PIYSSFISKKEESST--FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
           P+    + +     T    A +           P++   Y+ + ++ + V  +       
Sbjct: 2   PVQGWLVRRGLSEWTGALAATVVGFVAAIAVFAPIVVALYFRIEQVLDAVEALPR----- 56

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
                                  ++  ++   +    ++   +D++   A+ F +     
Sbjct: 57  --------------------ELSVTVLEATHTVEAGEIQALAVDYLSDAATSFALALPVL 96

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +     I+ +F     G    +   +   H +      +++   + + + ++     +I
Sbjct: 97  GIKFALFIVLMFGLLLKGDEAGRAAVAPIPHDYRDVVYALTKRARETLYAIYVLQVATSI 156

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
              LV    + L G  + + L ++ A++  +P   P    A      +      A  L  
Sbjct: 157 ATLLVAYPLFRLLGYEAALTLSIMAAVLQFVPIIGPSMLIAPITLYHVAVGDLVAATLIG 216

Query: 284 WG--AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                   ++ D  +RP L      LP    F G  GG+ T+G +G+ +GP+++A+  
Sbjct: 217 VLGLVFVAWLPDIAVRPRLSRRSAGLPGSLYFVGFTGGLFTLGPIGIVVGPLIVAVFV 274


>gi|78184847|ref|YP_377282.1| hypothetical protein Syncc9902_1274 [Synechococcus sp. CC9902]
 gi|78169141|gb|ABB26238.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 359

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/275 (10%), Positives = 83/275 (30%), Gaps = 4/275 (1%)

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP-RWL 110
             +  + S  L +     +    ++  +      + E   L+ ++  A Q  + +   W+
Sbjct: 48  ERRPMDRSLALLLCLGGLLTIFTVILTVV-IPPFLEEFAVLLQQLPKAAQTLLGLLMDWI 106

Query: 111 SDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFM 170
             I   ++  +  +       S         ++  +          G+        +  +
Sbjct: 107 DGISQAIYGVDSPSNLDEIGVSDPSKLVPNGQSIAVGLGSGALGLLGLAGNLGNALLRLL 166

Query: 171 IIALFFFY--RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
            +            +       L    +     ++  +  + + S  +G+ I ++    +
Sbjct: 167 FVIAVALMVSVQPQAYRGVGLQLIPSFYRRRAAEVLDLCGQALSSWMVGVLISSLAVSAL 226

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
            G A  L GV   +A  ++  ++ +IP   P   T   + + +    + +  +     + 
Sbjct: 227 CGIALSLLGVKLVLANALLAGLLNIIPNVGPTMSTVFPMAVAVLDAPWKSIAVLGAYVVI 286

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             +    + P ++   +KL    T           
Sbjct: 287 QNMESYVITPSVMHHQVKLLPGLTLAAQFVFTLIF 321


>gi|229016266|ref|ZP_04173214.1| UPF0118 membrane protein [Bacillus cereus AH1273]
 gi|229027023|ref|ZP_04183340.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228734281|gb|EEL84958.1| UPF0118 membrane protein [Bacillus cereus AH1272]
 gi|228745037|gb|EEL95091.1| UPF0118 membrane protein [Bacillus cereus AH1273]
          Length = 257

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 5/248 (2%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           + +       +             +E+    +S  + +++        + I        +
Sbjct: 1   MPVITVQISQLIHQFQGFFKQPPDNEIIKYLISTIKEMEVSKYIEQGADVIYQYLAGIGK 60

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                    +  +F ++                 S   +    + +K  R   KVI    
Sbjct: 61  VSSQMFLSFILSLFFLLEKERIIAFTSKFKDSKLSFFYNEIAYFGQKFVRSFGKVIE--- 117

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGN 274
               +IA+   ++   A WL G P  + L ++  ++ +IP    I     + I     G 
Sbjct: 118 -AQFLIAVINCILSVIALWLLGFPQLLVLALMIFLLGLIPVAGVIISLFPLCIIAYNVGG 176

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +     + ++  +        L P  +     LP   TF  L+      G+ GL IG  +
Sbjct: 177 MTYVVYILIFITVIHAFESYFLNPKFMSAKTNLPIFYTFIILIFSEHFFGVWGLIIGIPI 236

Query: 335 MALIAVIW 342
              +  ++
Sbjct: 237 FIFLLDVF 244


>gi|298711503|emb|CBJ26591.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 711

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 63/201 (31%), Gaps = 4/201 (1%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
                       + FG   +     ++ +   +F+       + + +            +
Sbjct: 305 GGKIFASGATLLASFGSFLIMVGFKVVLLFTCVFYMTSHDDFLERNIGDFLPVSQADQKR 364

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            + + +   I   F     +A   G+V   ++ +  +        +  +++++P      
Sbjct: 365 AM-KKLRGAIHGVFFMPCKVACLRGVVTLFSFKVLQIEFPFFAAFVAVLVSILPIVPAYI 423

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                  +L+    +    L +   + L ++D  L    V          T      G  
Sbjct: 424 VCWPWALMLVLHGRWVGITLAISQHLILSVIDTELYTQGVREA---NPYLTSLSCFLGYS 480

Query: 322 TMGLLGLFIGPVLMALIAVIW 342
             G  G+ +GP+++ L  +I+
Sbjct: 481 VFGAHGVLMGPLVLCLGTLIY 501


>gi|297685074|ref|XP_002820124.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein C9orf5-like
           [Pongo abelii]
          Length = 880

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 589 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 648

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 649 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 708

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 709 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 768

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 769 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 825

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 826 IGPILLCILVV 836


>gi|251798314|ref|YP_003013045.1| permease [Paenibacillus sp. JDR-2]
 gi|247545940|gb|ACT02959.1| permease-like protein [Paenibacillus sp. JDR-2]
          Length = 361

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 82/275 (29%), Gaps = 4/275 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +++++ +  +L     P+  A +I     P+     +K     +  + I+ + 
Sbjct: 15  IALIALTVYLVMFAFSYLYKIATPIFFAFVIYLCIEPLAKRL-NKIGIKKSIASGISVLV 73

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVS-KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
              + I     L Y    +  + +  K+    +      +   D        +       
Sbjct: 74  FSLIIIGLFSGLAYIITSQGADFIKVKLPQYQELFKEQVQ--DDSSVFQQKLQALPPEWV 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +  I   T       + I      +   F  +  + +  II  +F   +     +  
Sbjct: 132 ERITEYINGATEYLPKLANIIFTGLIGYISSFSTFLFNFVIGIILAYFLSIEIKIWKKTA 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           +    + F   +  +   V K I +       +     LV+ +A  +  V +  A+    
Sbjct: 192 NDKTPNTFKKAFFFLRENVFKGIGAYVKAQAKMMSITFLVIFAALLILRVENAFAISFTA 251

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
                I             +L + G   +A  L +
Sbjct: 252 GDFRRIAASWRKYAVYSLDHLFVPGWPNHACRLAV 286


>gi|149412846|ref|XP_001513187.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
          Length = 714

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 79/224 (35%), Gaps = 9/224 (4%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           W K +     + +     L    +  +       G   L++ LS++  +  LF+      
Sbjct: 450 WPKEILESLWIVMSRNVSLLFTTVTTLVTILFYSGTALLNFVLSLVIFLTTLFYLLSSSD 509

Query: 183 SISQ---QLDSLGEHLFPAYWKKISRI-VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
              +    + SL     P     I    V + IR  F     +A   GL     + + G+
Sbjct: 510 EYYKPVKWVISLTPLSQPGPSSNIVGQSVEEAIRGVFDASLKMAGFYGLYTWLTHTIFGI 569

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTL 296
                   + AI+  +P          ++  L   +G    A  L ++  +  + VD  +
Sbjct: 570 NIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGAGCKAILLLVFHLLPTYFVDTAI 629

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              + GG        T   + GG   +GL G  IGP+L+ ++ V
Sbjct: 630 YSDISGGG---HPYLTGLAVAGGAYYLGLEGAIIGPILLCILVV 670


>gi|213622260|ref|ZP_03375043.1| hypothetical protein SentesTyp_33998 [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 157

 Score = 68.5 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 44/148 (29%), Gaps = 2/148 (1%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                   ++   + + I +   G  +  +  G+     + L G+   + L V+     +
Sbjct: 10  PRNRGLAGQVWNEMNQQITNYIRGKVLEMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVL 69

Query: 254 IPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
           IP       T   +   L   G        F    I   +    L P L    + L  L 
Sbjct: 70  IPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLV 129

Query: 312 TFFGLVGGVRTMGLLGLFIGPVLMALIA 339
               +V      G  G+F    L  LI 
Sbjct: 130 IILSVVIFGGLWGFWGVFFAIPLATLIK 157


>gi|33322751|gb|AAQ07110.1|AF496422_1 UPF0018 permease [Lactobacillus delbrueckii subsp. lactis]
          Length = 118

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL-FLWGAIELFIVDKTLRPFLVGGP 304
           ++T +  +IP   PI    + I          A  +  +   +   I    L P L+   
Sbjct: 1   LVTGLGNLIPYFGPILGYGMVILACTLSQNMTALIVGMIILLLIQAIDGNILNPKLLSSA 60

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           I +  L     ++ G    G +G+ I   + AL+   ++  I   ++  EK   
Sbjct: 61  IHIHPLYVIVCVIAGGAMGGFVGMLIAVPMGALLKTEFERLIAYRQKQLEKSKE 114


>gi|296190529|ref|XP_002743228.1| PREDICTED: transmembrane protein C9orf5-like [Callithrix jacchus]
          Length = 880

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 77/251 (30%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +      S +   +       + L    S  +       T  +  +  
Sbjct: 589 HVSRQNSWLGDILDWQDIASFVHENIETFLSILESLWVVMSRNVSLLFTTVTTLLTILFY 648

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 649 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 708

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 709 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 768

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 769 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 825

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 826 IGPILLCILVV 836


>gi|322370455|ref|ZP_08045013.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549872|gb|EFW91528.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 381

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/342 (13%), Positives = 105/342 (30%), Gaps = 23/342 (6%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
                  +ILV +  L  +   ++  + + + + PI    +          A +    ++
Sbjct: 16  WWLFAAALILVLVTSLGSYLGWLVFGVFLYYVARPIARRLVG-FGLPPGIAASVTLAVIV 74

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
             FI  L  +      ++  +             V R +  +  G     + T       
Sbjct: 75  LPFIALLGTVAVIAFGQLSTV---------RVADVERLVRVLFPGFDFRAIPTTPERLYD 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL--- 188
           S+  L       + +         F     +  L++IF+   +    +      + +   
Sbjct: 126 SVTRLLRNPSIRSFLFQFRGLIGAFATQSYNLFLTLIFVFFLVRDEGKIAGWFRRTVADE 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
           ++       A  + ++ +      + F+ + + A+   L+   A     +P  + + + T
Sbjct: 186 ETRTGEYLHAVDRGLNSVFFGYTLTIFVIIVLSAVIYTLLNLVAPPGMAIPQTMLVAIAT 245

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLRPFL 300
            +  ++P         V ++ L             F    L +        V   +RP L
Sbjct: 246 GLATIVPLVGRSIVYFVVVFYLAIVALRTDPVLLWFPVLFLAIMEIAFDNAVRTYIRPIL 305

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
            G     P     F  + G    G  G+F+GP +M +     
Sbjct: 306 SGRLF--PTGLIMFAYLLGPPVFGWYGIFLGPFIMVVTVQFL 345


>gi|225389531|ref|ZP_03759255.1| hypothetical protein CLOSTASPAR_03279 [Clostridium asparagiforme
           DSM 15981]
 gi|225044395|gb|EEG54641.1| hypothetical protein CLOSTASPAR_03279 [Clostridium asparagiforme
           DSM 15981]
          Length = 297

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 74/267 (27%), Gaps = 8/267 (2%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-------EESSTFLAVIATVSVMC 72
           +L  L  L    +P +    I F       +            +        +A ++V  
Sbjct: 31  LLELLGSLVHIASPFILGAAIAFVLNVPMRNIERHLPWKGKLEKLKRPAAMSLAILAVAG 90

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQ 131
           +  +    +    +     L   V +           L +  P  +              
Sbjct: 91  VLFLVTFVVAPEMINTFSGLQKSVPIFFAGVKNQAEELFASNPQILEYLGSVQVDWDQIL 150

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                       + +      A         + +  IF I  LF            +++ 
Sbjct: 151 QNMAEFLKTGAGSMLSTTMSAAVSIVNGVSTFAIGFIFAIYILFQKEVLSRQFCSLMNAF 210

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      I+ +  +   S   G  + A+  G++   A  +  +P  + +GV+ A  
Sbjct: 211 LPEPAVKRTLYIAALAERTFSSFLTGQCVEAVILGVMFFVALSILRLPYALLVGVLIAFT 270

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNA 278
           A+IP         +  +L++  N  +A
Sbjct: 271 ALIPIFGAFVGLGIGAFLMLMVNPMDA 297


>gi|114626082|ref|XP_520176.2| PREDICTED: similar to chromosome 9 open reading frame 5 isoform 2
           [Pan troglodytes]
          Length = 865

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 588 HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 647

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 648 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 707

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 708 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 767

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 768 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 824

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 825 IGPILLCILVV 835


>gi|157364495|ref|YP_001471262.1| hypothetical protein Tlet_1644 [Thermotoga lettingae TMO]
 gi|157315099|gb|ABV34198.1| protein of unknown function UPF0118 [Thermotoga lettingae TMO]
          Length = 334

 Score = 68.5 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/341 (10%), Positives = 91/341 (26%), Gaps = 17/341 (4%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
             + + I ++     + FF  VL   I       + S              VIA +    
Sbjct: 11  TLIYIAIFIILSLIYRNFFNTVLLTFIAVMIVDAVASFITRFLHVPKRIATVIALLIYFF 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             I  L+ +      ++ +    +    +                  +     +     +
Sbjct: 71  ALIWGLVMIVPNAFTQIADFYKLITDIIEK----------------RTWEQYINNEELIN 114

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                  F++ +                    + + F I+   +       I Q +  L 
Sbjct: 115 ALNALVDFIEPSIAQLANYLLREAAAHIPGVIVVLFFSILGAVYVSLYAHHIVQVVPLLY 174

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    +    +   +R     + + A+  G+     +    +P    +     +  
Sbjct: 175 PRKCRDGINEFLSELKINMRRFIGVIALNAVIVGIAFALLFRFMNLPYAPLIAFWAFLTN 234

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
            IP    I          +   +     +  +  +    V        + G  ++  +  
Sbjct: 235 FIPIVGVIFEFIPIFLFSLSLGLTGMFWIITFSILIHLSV-FIFFFEAMKGYARVNPVLM 293

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
            F ++      G +G+F G      + V +K+ I A  E++
Sbjct: 294 IFSILITSEIFGPVGIFFGVPAAVFVVVFYKQFIKAQLESE 334


>gi|40225713|gb|AAH14248.2| C9orf5 protein [Homo sapiens]
          Length = 340

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +     +S +   +       + L    S  +       T  +  +  
Sbjct: 49  HVSRQNSWLGDILDWQDIVSFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 108

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 109 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 168

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 169 RGVFDASLKMAGFYGLYTWLTHTMFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 228

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 229 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 285

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 286 IGPILLCILVV 296


>gi|2960002|emb|CAA76498.1| outer membrane protein [Campylobacter jejuni]
          Length = 364

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 10/243 (4%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               +   L          +K    +    +    I  +AS F      + + ++ + + 
Sbjct: 116 YVKNYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVF 175

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
            FF    G  +   L S+           +   V  V+      M I+AI +G + G   
Sbjct: 176 YFFANLYGTELVIYLKSIIPIDKKEL-DDVLSEVGNVMAVVLYSMVIVAIFQGALFGLIT 234

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIV 292
              G    +   +      +   G  + +  VS+Y     N+ +A  +F++  I + FI 
Sbjct: 235 IFYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFIA 294

Query: 293 DKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           D  ++P         LV  P K+  L  F  ++ G+ T G  G+ +GP ++       + 
Sbjct: 295 DTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVSTLRM 354

Query: 345 SIM 347
            ++
Sbjct: 355 YVI 357


>gi|325181211|emb|CCA15625.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 776

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 81/253 (32%), Gaps = 5/253 (1%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
             + +S     + +  L +  LS   S  I   +    +    +    +           
Sbjct: 291 FFQAVSYAYAKVDSVNLTSVQLSDWTSKGIEVSSIAVGSVAQLLLLICTILIAFVSLGIR 350

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +  F+    +        I + ++ L          ++   + KVI   F     ++   
Sbjct: 351 AFFFISSLFYLLCTKWDPIERFVEDLLPIQNEKRP-QVVHSIRKVIEGVFFVPLKMSSLH 409

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLW 284
            LV   ++ +           +T  ++++P   P          + +  +   A  LF  
Sbjct: 410 ALVTLISFSIVRADFVYLATTLTFFISIVPIIPPYLVCVPWALAIGVTSSFIKALILFCV 469

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I   I+D  L        + L    +   +V GV   G  G+  GP+ +  +   ++ 
Sbjct: 470 QYIAFTILDDMLYEK---SIVALNSYVSALSVVFGVYVFGFEGVIFGPLSVCGVYFAYEV 526

Query: 345 SIMAIKENKEKIS 357
           S   I+  ++ ++
Sbjct: 527 SNHGIQAAQDDVT 539


>gi|116070722|ref|ZP_01467991.1| hypothetical protein BL107_13790 [Synechococcus sp. BL107]
 gi|116066127|gb|EAU71884.1| hypothetical protein BL107_13790 [Synechococcus sp. BL107]
          Length = 337

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 61/222 (27%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +   +         L          +  + +       +    F     +  + +
Sbjct: 90  DQFRQLGRDLPQLVGKLSDLISSDPRLEQFDEAIGSAINLKGLQPLLGFAGGAANTLIQL 149

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           + M++       D  +  + L +           ++       +     GMT+ A    L
Sbjct: 150 LLMVLLAILLALDPGAHRRMLLAACPRPAREQLDQLLDECRHALGGWLSGMTLSATTVFL 209

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +      +   P  +   ++   +  +P   P + T +   L +  +      + ++  I
Sbjct: 210 LTWGGLLVLKAPLALLSALVCGFLTFVPTIGPTAATLLPTGLALLQSPQLMVSVLVFRLI 269

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              +    L P L+   + L               +GL G+ 
Sbjct: 270 LQNLEAFLLTPLLLRKTVNLLPTVALMAQFSLGALLGLPGVL 311


>gi|72005299|ref|XP_783596.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115960849|ref|XP_001193862.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 837

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/217 (19%), Positives = 77/217 (35%), Gaps = 6/217 (2%)

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF--YRDGFSISQQLD 189
            L +     L  +    I       G   L++ +S +  +  LF+   + D   +  +  
Sbjct: 592 WLVLKGNMNLIASLFTTILYMILEGGTAILNFIISFVVFMTTLFYLLSFSDKQYLPMKWI 651

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           S       +   K  + V   IR  F     ++   GL     + + G+        + A
Sbjct: 652 SSLTPGNDSTSSKYGQAVENSIRGVFGASIKMSTFYGLYTWLTHTIFGLQIVYVPSALAA 711

Query: 250 IMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +   IP           +  LL+ G    A  LF+   + +++VD  +   + GG     
Sbjct: 712 LFGAIPFVGTYWAAVPGVIELLVHGEKVLAVMLFVVQMLPMYVVDTAIYSDIKGGG---H 768

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
              T   + GG+   GL G  IGP+L+ ++ V     
Sbjct: 769 PYLTGLAVAGGIYCYGLEGAIIGPILLCVLLVAVNIF 805


>gi|222100363|ref|YP_002534931.1| hypothetical protein CTN_1389 [Thermotoga neapolitana DSM 4359]
 gi|221572753|gb|ACM23565.1| Hypothetical Protein CTN_1389 [Thermotoga neapolitana DSM 4359]
          Length = 321

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/320 (10%), Positives = 90/320 (28%), Gaps = 24/320 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               ++  L +      +        ++  +   V+A V +  +     +  F   + E 
Sbjct: 24  IITALVMGLYLSIIVDYVARFLGLFIKKPRSLSRVLANVLIFLMIAYSAVNFFPVIIKEA 83

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           + + S++         +                                + +  +  +  
Sbjct: 84  QRVFSEIDRVRTGLENM----------------------EIPEWVSSIISNISASFSEGA 121

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               +R       +  + + ++I  F        + + +  L     P   K+  +    
Sbjct: 122 LSLVNRIVGYVPSFITAAVLIVITSFIVSSLKKLVKENVSYLFP-KDPEDGKRFLKTTYS 180

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIY 268
                  G  ++AI  G+ +G   +L  +PS   LG++  I   +P    I     + + 
Sbjct: 181 EFERFVGGQVLVAIFVGVFVGVGAFLFRIPSAFFLGMLAFITDFVPYLGVIISAIPLLML 240

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                 ++      +       +    L P +    + + +      ++         G+
Sbjct: 241 SFSVHGLYGLLIGTIILVAANQLEMWILAPRIQSSALNIHWFIILITILIFGDLFSFGGV 300

Query: 329 FIGPVLMALIAVIWKESIMA 348
            I    +  +   WK  +M 
Sbjct: 301 LIALPFLIFLRNYWKHYVMG 320


>gi|78184848|ref|YP_377283.1| hypothetical protein Syncc9902_1275 [Synechococcus sp. CC9902]
 gi|78169142|gb|ABB26239.1| conserved hypothetical protein [Synechococcus sp. CC9902]
          Length = 329

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 61/222 (27%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                +   +         L          +  + +       +    F     +  + +
Sbjct: 82  DQFRQLGRDLPQLVGKLSDLLSSDPRLEQFDEAIGSAINLKGLQPLLGFAGGAANTLIQL 141

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
             M++       D  +  + L +           ++       +     GMT+ A    L
Sbjct: 142 FLMVLLAILLALDPSAHRRMLLAACPRPAREQLDQLLDECRHALGGWLSGMTLSATIVFL 201

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +      +   P  +   ++  ++  +P   P + T +   L +  +      + ++  I
Sbjct: 202 LTWGGLLVLKAPLALLSALVCGLLTFVPTIGPTAATLLPTGLALLQSPQLMVSVLVFRLI 261

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
              +    L P L+   + L               +GL G+ 
Sbjct: 262 LQNLEAFLLTPLLLRKTVNLLPTVALMAQFSLGALLGLPGVL 303


>gi|170289412|ref|YP_001739650.1| hypothetical protein TRQ2_1632 [Thermotoga sp. RQ2]
 gi|170176915|gb|ACB09967.1| protein of unknown function UPF0118 [Thermotoga sp. RQ2]
          Length = 321

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 90/320 (28%), Gaps = 24/320 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               ++  L +      +        ++      VI+ V V        +  F   + E 
Sbjct: 24  IITALIMGLYLSIIIDYVARFLGILVKKPRVLPRVISNVLVFLTTAYSAVNFFPVIVREA 83

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +++ +++         +                                  +  +  +  
Sbjct: 84  QKVFTEIDRIKSGLENI----------------------DIPGWLSSILNSISASFSEGA 121

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               ++       +  + I ++I  F        I + +  L     P+  K+  +    
Sbjct: 122 LSLVNKIIGYVPSFITAAILIVITAFIVSSLKRLIKENVHYLFPT-NPSDGKEFLKTTYT 180

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIY 268
                  G  ++AI  GL +G   ++  +PS   LG++  +   +P     IS   + + 
Sbjct: 181 EFERFVGGQVLVAIFVGLFVGFGAFIFKIPSAFFLGMLAFVTDFVPYLGVVISAIPLLML 240

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                 +       +       +    L P +    + + +      ++         G+
Sbjct: 241 AFSVHGLSGLLIGTIILVAANQLEMWVLAPKIQSNTLNVHWFIILITILILGDLFSFGGV 300

Query: 329 FIGPVLMALIAVIWKESIMA 348
            I    +  +   WK+ +M 
Sbjct: 301 LIALPFLIFLKNFWKQYVMG 320


>gi|148270688|ref|YP_001245148.1| hypothetical protein Tpet_1566 [Thermotoga petrophila RKU-1]
 gi|281412994|ref|YP_003347073.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
 gi|147736232|gb|ABQ47572.1| protein of unknown function UPF0118 [Thermotoga petrophila RKU-1]
 gi|281374097|gb|ADA67659.1| protein of unknown function UPF0118 [Thermotoga naphthophila
           RKU-10]
          Length = 321

 Score = 68.1 bits (165), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/320 (10%), Positives = 90/320 (28%), Gaps = 24/320 (7%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               ++  L +      +        ++      VI+ V V        +  F   + E 
Sbjct: 24  IITALIMGLYLSIIIDYVARFLGILVKKPRVLPRVISNVLVFLTTAYSAVNFFPVIVREA 83

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           +++ +++         +                                  +  +  +  
Sbjct: 84  QKVFTEIDRIRSGLENI----------------------DIPGWLSSILNSISASFSEGA 121

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               ++       +  + I ++I  F        I + +  L     P+  K+  +    
Sbjct: 122 LSLVNKIIGYVPSFITAAILIVITAFIVSSLKRLIKENVHYLFPT-NPSDGKEFLKTTYT 180

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP-ISFTAVSIY 268
                  G  ++AI  GL +G   ++  +PS   LG++  +   +P     IS   + + 
Sbjct: 181 EFERFVGGQVLVAIFVGLFVGFGAFIFKIPSAFFLGMLAFVTDFVPYLGVVISAIPLLML 240

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
                 +       +       +    L P +    + + +      ++         G+
Sbjct: 241 AFSVHGLSGLLIGTIILVAANQLEMWVLAPKIQSNTLNVHWFIILITILILGDLFSFGGV 300

Query: 329 FIGPVLMALIAVIWKESIMA 348
            I    +  +   WK+ +M 
Sbjct: 301 LIALPFLIFLKNFWKQYVMG 320


>gi|297270414|ref|XP_001107939.2| PREDICTED: transmembrane protein C9orf5-like isoform 2 [Macaca
           mulatta]
          Length = 880

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 77/251 (30%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            VS+        +      S +   +       + L    S  +       T  +  +  
Sbjct: 589 HVSRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 648

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 649 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 708

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 709 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 768

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 769 LTQGLGCKAILLLIFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 825

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 826 IGPILLCILVV 836


>gi|293347382|ref|XP_001059736.2| PREDICTED: hypothetical protein [Rattus norvegicus]
 gi|293359269|ref|XP_216388.4| PREDICTED: hypothetical protein [Rattus norvegicus]
          Length = 880

 Score = 67.7 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 9/234 (3%)

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +    +  ++W   +     + +     L    +  +       G   L++ LS+I  + 
Sbjct: 606 LSILSFGFQIWKMKILESLWIVMSRNVSLLFTTVTTLLTILFYSGTALLNFVLSLIIFLT 665

Query: 173 ALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVIRSTFLGMTIIAIGEGLV 228
            LF+         +    + SL     P     I    V + IR  F     +A   GL 
Sbjct: 666 TLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLY 725

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGA 286
               + + G+        + AI+  +P          ++  L   +G    A  L ++  
Sbjct: 726 TWLTHTVFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAVLLLVFHL 785

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +  + VD  +   + GG        T   + GG   +GL G  IGP+L+ ++ V
Sbjct: 786 LPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAIIGPILLCILVV 836


>gi|237803518|ref|ZP_04591103.1| lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025500|gb|EGI05556.1| lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 211

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 87/214 (40%), Gaps = 5/214 (2%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
             N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2   FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELW 123
           + ++  M L   PL++L +     +++    +           P+WL+ IP         
Sbjct: 62  VMSLCWMLLVAAPLVWLGFNLADHVRDATGLIKNIQVDGLPDPPQWLAGIPLVGERLVGI 121

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +    +  + +         +++   +++ G   L+  LSIIF      FFYRDG  
Sbjct: 122 WTTIDQQGAAFMTTVKPYLGEVGNWLLARSAQIGGGILELTLSIIFAF----FFYRDGPR 177

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
           ++  + SL E L     +    +V   ++    G
Sbjct: 178 LAAFVLSLLERLIGDRAQYYLDLVAGTVQRVVNG 211


>gi|301762328|ref|XP_002916585.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein C9orf5-like
           [Ailuropoda melanoleuca]
          Length = 883

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 77/251 (30%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            +S+        +      S +   +       + L    S  +       T  +  +  
Sbjct: 592 HISRQNSWLGDILDWQDIASFVHENIETFLSILESLWIVMSRNVSLLFTTVTTLLTILFY 651

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 652 SGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 711

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 712 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 771

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 772 LTQGLGCRAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 828

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 829 IGPILLCILVV 839


>gi|256053066|ref|XP_002570030.1| strawberry notch-related [Schistosoma mansoni]
 gi|227287385|emb|CAY17644.1| strawberry notch-related [Schistosoma mansoni]
          Length = 1115

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 89/257 (34%), Gaps = 10/257 (3%)

Query: 110  LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
            LS +      +      ++      + S   L    I  +       G + +++ ++ + 
Sbjct: 749  LSSLFVIFKQNLGTFATITESLWSLMRSNVNLIAQLITTLISLIMSGGHVAMNFVIAFLI 808

Query: 170  MIIALFFFYRDGFSIS---QQLDSLGEHLFPAY--WKKISRIVPKVIRSTFLGMTIIAIG 224
             +  L++      S       + SL             +   V   I   F+    +A+ 
Sbjct: 809  FLTVLYYVLAASGSCYLPVAFISSLTPTFTGTNSLITHLYSTVESAISGVFVATLKLALF 868

Query: 225  EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLF 282
             GL     + + G+   +   V+ AI+  +P               ++I+ ++  A  L 
Sbjct: 869  YGLYTSLTHIIFGLDLVIIPSVLAAILGAVPIIGTYWAVLPGAIEIIIIRQSLSQAGLLI 928

Query: 283  LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             +  +  ++VD ++   + G         T   + GG+   G  G  IGP+L+    V  
Sbjct: 929  FFHVLPTYVVDVSVYREIKGAG---HPYFTGLAIAGGIYCQGPEGAIIGPILLCCFLVGI 985

Query: 343  KESIMAIKENKEKISSN 359
                 A+  +K  ++++
Sbjct: 986  NMFRWAMDSSKNALAAD 1002


>gi|149195244|ref|ZP_01872333.1| hypothetical protein CMTB2_00079 [Caminibacter mediatlanticus TB-2]
 gi|149134586|gb|EDM23073.1| hypothetical protein CMTB2_00079 [Caminibacter mediatlanticus TB-2]
          Length = 335

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 48/344 (13%), Positives = 102/344 (29%), Gaps = 24/344 (6%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
             +  + +          K +   +  A ++      I        +      +++  + 
Sbjct: 2   SFLHILTIISAYFVYLTYKPYLLDIAIASLMAIAFGKIQFLLSKYIKNKYLLASLLTVLL 61

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            + +F   L F+   G          + +  Q    +  +L D+        L    L  
Sbjct: 62  AVLIFGPILYFVVKVGNFLTHINFEDIKIILQKAQELLSYLPDVISKEIKMFLSDDKLQE 121

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +  +     +      F           F         +         +   +     
Sbjct: 122 LYAKVVPIIGNVTAKSAVFFKDTFLIIIFFFFAVLYGREILEYFKKVIPLENEKL----- 176

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                      +K+     +V+   F    + A  EG++ G    L G+       +   
Sbjct: 177 -----------EKLFFNTSEVMSVVFYSTLLTAFLEGVLFGFIVSLYGLDFFFFSIMYAF 225

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF-LWGAIELFIVDKTLRP-------FLV 301
              +   G  + +  VS++L   GNI  A  +      +   I D  ++P        +V
Sbjct: 226 ASLIPIVGGIMMWGPVSLFLYANGNIQGAIVVAIYSIIVISIIADTFIKPFIIDFVKKIV 285

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
               +L  +  FF +V G+ + GL G+ IGP + +L   I +  
Sbjct: 286 ESDTELNSMLIFFSIVAGLSSFGLWGIIIGPAITSLFISILQFY 329


>gi|309779244|ref|ZP_07674007.1| permease [Ralstonia sp. 5_7_47FAA]
 gi|308922048|gb|EFP67682.1| permease [Ralstonia sp. 5_7_47FAA]
          Length = 422

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/326 (12%), Positives = 92/326 (28%), Gaps = 25/326 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  M  + +   LV L + + F  PV   +++ F   P+      +        A I  +
Sbjct: 29  RVAMVLVAIGGTLVFLQWARAFLVPVTLGVVLAFALNPVVVWL-RRCYVPRPLAAGIVVL 87

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
                  +    L +     +  +  ++ +A +        +    GG +          
Sbjct: 88  G----LWIAGAMLVFGMQDGVSAMADRLPVAAERMAQAVDGMRGHMGGAFDKMRDVTVAL 143

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS----- 183
              +  +  +              ++          L       +   F   G       
Sbjct: 144 EHAAEGVQGKPAPAPAKRSPATPVSAEPAAAQPVLPLREFLWTGSASLFALAGQLVVVSF 203

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG--LVLGSAYWLAGV--- 238
           +   L + G+ L   + + +   + +  R+  +   I    +   LVL +   + GV   
Sbjct: 204 LVYFLLASGQALKRKWVRAVGNTLSEKKRAVRMMAVIGTQIQYSLLVLFATNIMLGVLTT 263

Query: 239 --------PSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGNIFNATCLFLWGAIE 288
                         G+ TA++  +P    +     S     L  G   +A  +     + 
Sbjct: 264 VAFVLLGMEDAAVWGLATAVLHFVPYLGSVVIAVASGIGAYLQMGAWSDALVVAGVTLLL 323

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFF 314
             +V   L  +L     KL     + 
Sbjct: 324 ATLVGTLLVTWLQSRASKLDPCVVYI 349


>gi|126723478|ref|NP_780727.3| hypothetical protein LOC242474 [Mus musculus]
          Length = 880

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 9/234 (3%)

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           +    +  ++W   +     + +     L    +  +       G   L++ LS+I  + 
Sbjct: 606 LSILSFGFQIWKMKILESLWIVMSRNVSLLFTTVTTLLTILFYSGTALLNFVLSLIIFLT 665

Query: 173 ALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVIRSTFLGMTIIAIGEGLV 228
            LF+         +    + SL     P     I    V + IR  F     +A   GL 
Sbjct: 666 TLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAIRGVFDASLKMAGFYGLY 725

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGA 286
               + + G+        + AI+  +P          ++  L   +G    A  L ++  
Sbjct: 726 TWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLWLTQGLGCKAILLLVFHL 785

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +  + VD  +   + GG        T   + GG   +GL G  IGP+L+ ++ V
Sbjct: 786 LPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAIIGPILLCILVV 836


>gi|149198168|ref|ZP_01875215.1| hypothetical protein LNTAR_15942 [Lentisphaera araneosa HTCC2155]
 gi|149138770|gb|EDM27176.1| hypothetical protein LNTAR_15942 [Lentisphaera araneosa HTCC2155]
          Length = 649

 Score = 67.7 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 90/280 (32%), Gaps = 9/280 (3%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           + E+++ + +  + +     +   L D       +   TK          +         
Sbjct: 359 VKELEQKLKEFPVLSAFTTQLALALEDKDNLNTIAAKLTKASGGLLGTLQVMAGTFINIV 418

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           +D           +       ++    +   +  DG   +                 I  
Sbjct: 419 LDIFMGLFFFIFFLKKMALFQLVSGGQSTGQYIIDG-IFNSTWTPTLNQETKQEAISILD 477

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
           +V   ++    G   I + E  +    + + GVP  + L +I+++  ++P   PI   A+
Sbjct: 478 VVIDKMQRWVRGCMFIILVELPIFLIIFSIMGVPYAIPLAIISSLQVLLPFLGPIIAIAL 537

Query: 266 SIYLLIKGNIFNATCLF----LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
           +  + +   I +         ++  I   +    L P LVG  + L  L T   ++ G  
Sbjct: 538 TFVICLFNGITDPAFYLGLALVYFLIVTLLEGFFLYPKLVGASLGLTLLETIIVVLLGGI 597

Query: 322 TMGLLGLFIGPVLMALIA----VIWKESIMAIKENKEKIS 357
           T G+ G   G    ++I      I+K      + ++    
Sbjct: 598 TAGIGGAIFGVPAASIIKYLSPRIYKSFFSNKESSEPPPE 637


>gi|325181210|emb|CCA15624.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 790

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 81/253 (32%), Gaps = 5/253 (1%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
             + +S     + +  L +  LS   S  I   +    +    +    +           
Sbjct: 305 FFQAVSYAYAKVDSVNLTSVQLSDWTSKGIEVSSIAVGSVAQLLLLICTILIAFVSLGIR 364

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +  F+    +        I + ++ L          ++   + KVI   F     ++   
Sbjct: 365 AFFFISSLFYLLCTKWDPIERFVEDLLPIQNEKRP-QVVHSIRKVIEGVFFVPLKMSSLH 423

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLW 284
            LV   ++ +           +T  ++++P   P          + +  +   A  LF  
Sbjct: 424 ALVTLISFSIVRADFVYLATTLTFFISIVPIIPPYLVCVPWALAIGVTSSFIKALILFCV 483

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I   I+D  L        + L    +   +V GV   G  G+  GP+ +  +   ++ 
Sbjct: 484 QYIAFTILDDMLYEK---SIVALNSYVSALSVVFGVYVFGFEGVIFGPLSVCGVYFAYEV 540

Query: 345 SIMAIKENKEKIS 357
           S   I+  ++ ++
Sbjct: 541 SNHGIQAAQDDVT 553


>gi|257053164|ref|YP_003130997.1| protein of unknown function UPF0118 [Halorhabdus utahensis DSM
           12940]
 gi|256691927|gb|ACV12264.1| protein of unknown function UPF0118 [Halorhabdus utahensis DSM
           12940]
          Length = 336

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/330 (13%), Positives = 105/330 (31%), Gaps = 25/330 (7%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           ++  +   I L+++  L   F  V  A+ + +  +P+     ++        A ++T   
Sbjct: 9   VLAGLFGAISLLAILTLWSVFWTVFFAITVAYVLYPVRRRLAARGLGPR-VAAGLSTAVA 67

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
               +  L  L Y   +        V                              ++  
Sbjct: 68  FVGALGVLAPLGYAVYVRRSAFFDMVGDL----------------------PPEFSITVL 105

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +    +  T +     +     A           L     ++ ++         ++    
Sbjct: 106 EMSHTIDVTTVVDVVRETAGSMALDAASAAPVLALKFFLFVLLVYALLLKPRMPARAARR 165

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
           +    +    + +   +   +   ++      +G  ++    ++L G  + V L V++ +
Sbjct: 166 VVPAEYHDVVQALHERLRDTLFGLYVLQGATGVGTFVIALPVFFLLGYDAAVTLAVLSGV 225

Query: 251 MAMIPGGAP--ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
           +  +P   P  +    V   +L +          +       + D  +RP L      LP
Sbjct: 226 LQFVPIIGPSVLIGVLVLTEVLAENVTAAILVGVVGFVFVAGLPDVLIRPRLSAVAADLP 285

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
               F G  GGV +MG +G+  GPV++AL+
Sbjct: 286 GSLYFIGFTGGVLSMGAIGIIAGPVVVALL 315


>gi|322806090|emb|CBZ03657.1| permease [Clostridium botulinum H04402 065]
          Length = 118

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 45/112 (40%)

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
             VP    +  I  I  MIP   P      +  + +  N   A  + ++  I   +    
Sbjct: 1   MKVPYAALISFIVGITNMIPYFGPFIGMIPAFIITLFFNYIKAIWVLIFIIILQQLDGWY 60

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           L P ++G  + L  +   F +  G  T G++G+F+   + A+I +   + I 
Sbjct: 61  LGPKILGNQVGLSPIWIIFAITIGGGTFGVMGMFLSVPIAAIIKIYLDKYIE 112


>gi|228930445|ref|ZP_04093445.1| hypothetical protein bthur0010_51230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829164|gb|EEM74801.1| hypothetical protein bthur0010_51230 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 271

 Score = 67.3 bits (163), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 84/265 (31%), Gaps = 5/265 (1%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              L   + +       +    +        SEL    ++    +++        + +  
Sbjct: 7   AITLFKYLPVLTIQISQLIYQFNVFLRNPPDSELIKYAVNAVNHMELSKYVGQGVDILYK 66

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                 +FG+  L   +  +F ++             +   ++         +   +   
Sbjct: 67  SITNVGKFGLQVLLSLILSLFFLLEKARIVAFTAKFKESRLAIFYTEI----EYFGKKFA 122

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAVSI 267
           +          +IA+   ++   A W+ G P  + L ++  ++ +IP    I     + +
Sbjct: 123 RSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFLLGLIPVAGVIISLFPLCM 182

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
                G I     + +   +   +    L P  +     LP   TF  L+     +G+ G
Sbjct: 183 IAYNIGGIMYVVYILVIVTVIHALESYVLNPKFMSQKTNLPIFYTFMVLIFSEHFLGVWG 242

Query: 328 LFIGPVLMALIAVIWKESIMAIKEN 352
           L IG  +   +  +   +   ++++
Sbjct: 243 LIIGIPIFIFLLDVLDVTSDEMEKD 267


>gi|253827757|ref|ZP_04870642.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511163|gb|EES89822.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 324

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 108/321 (33%), Gaps = 14/321 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L A ++   +  I+   + K + +     ++  + ++  F+                 +
Sbjct: 3   ILIAFLLFIATHSIFQVILKKIKSTFLTSLLMTLLLLVLCFVPIFYVAINLASFAGNIDL 62

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
           + +                         L  +      S+  ++   +    +  + + +
Sbjct: 63  ASLQKFFTDMQVKILITGKDFLEYLPVALQQQINDLLLSVNSINWAEILKKALSVVAKIS 122

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +       D    +IF+    ++    G    + +      +     K +   V  VI  
Sbjct: 123 TNSAYFLSDAVFIVIFLFFFYYYGNALGRYCLEII-----PIEKQQIKTLYDEVSAVISV 177

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
            F    +  + +G++ G         S +          +   G  + +  V  Y L  G
Sbjct: 178 VFYSSIVSMVLQGVLFGILMAFYRYDSILLGVFYGFASLIPVVGGTLVWLPVVCYELYLG 237

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRPFLVG--------GPIKLPFLPTFFGLVGGVRTMG 324
           N+ NA  + L+  I +  + D  ++PF++          P+K+  +  FF ++ G+ + G
Sbjct: 238 NVTNAIVIALYSIIIIATLADNGVKPFVIAFINRILIETPVKINEMLIFFAIIAGLSSFG 297

Query: 325 LLGLFIGPVLMALIAVIWKES 345
             G+ +GP + AL   + +  
Sbjct: 298 FWGIVLGPAITALFIAMLRIY 318


>gi|309779498|ref|ZP_07674259.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gi|308921739|gb|EFP67375.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 345

 Score = 67.3 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/332 (11%), Positives = 91/332 (27%), Gaps = 21/332 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL--AVIA 66
             +   ++  +I   L+       P   A  + +          ++     T    A   
Sbjct: 18  NAVSYVLVAAMIAAVLWL---HLLPAAIAGFLVYAL---ARKLEARLRRRRTLSQRAKAI 71

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  + +    +L     G+  + E    +         V   L +       S +    
Sbjct: 72  AVICVFVIAALILAALGIGIGRLVEHGHGLEGMLTRIADVLDNLRESLPAAVVSYVPQSV 131

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L  + +          I        ++ +   L  +                + 
Sbjct: 132 TELRVQLVQMIKEHGHQVSTLGI-DGLRASALMLVGLILGAMVAWSETPDSEHHKPLAAA 190

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVAL 244
            +  L          +++     V+ +      +      + L  A  L G  VP   +L
Sbjct: 191 LVSRL---------SRLTDAFEAVVFAQVKISALNTALAAIYLLGALPLFGQHVPYSKSL 241

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
            ++T +  +IP    +      + + +  ++  A    ++  +   +    +   ++G  
Sbjct: 242 ILLTFVAGLIPVAGNLISNTAIVVMSVTASLELAVASLIFLVVVHKLE-YFVNARIIGSR 300

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
           I          L+      G+ G+   PVL A
Sbjct: 301 IDARAWELILALIVMEALFGVGGVIAAPVLYA 332


>gi|157363171|ref|YP_001469938.1| hypothetical protein Tlet_0304 [Thermotoga lettingae TMO]
 gi|157313775|gb|ABV32874.1| protein of unknown function UPF0118 [Thermotoga lettingae TMO]
          Length = 321

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 96/320 (30%), Gaps = 26/320 (8%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
               ++  + +      +   F            ++A V+V+ +    +   F   + E 
Sbjct: 24  IMTALMLGVYLSIIVDFVARFFARFLHGK--ISRILANVTVLGVIAYSIGNFFPVIINEA 81

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
           K++ S++         V                            +   T L  +  D  
Sbjct: 82  KKVFSEIEKIQITFEDV----------------------SIPDWILSFLTNLGKSFSDIA 119

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               ++          +++ ++I           +S++LD L     P      ++   +
Sbjct: 120 LTIVNKLLGYVPSLITALVIVVITTLIVGNLKKVVSKKLDKLFP-ENPEKGIYFAKTTYR 178

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
                  G  ++A   G  +G    +  +PS + LGV+  I   IP    I      + L
Sbjct: 179 EFERFVAGQVLVAAFVGFFVGVMSLIFKIPSAIFLGVLAFITDFIPYLGVIISAIPLLML 238

Query: 270 LIKGNIFNATCLFLWGAI-ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               +      + +   +    +    L P +    +K+ +      ++     +G  G+
Sbjct: 239 GFASHGLKGLIIGVLILLSANQLEMWFLAPKIQSNALKIHWFFILIAILLFGDVIGFGGI 298

Query: 329 FIGPVLMALIAVIWKESIMA 348
           F+    +  +   W + +  
Sbjct: 299 FVALPTLIYVKNFWNQYVSK 318


>gi|322378404|ref|ZP_08052858.1| membrane protein [Helicobacter suis HS1]
 gi|322380085|ref|ZP_08054341.1| aminoacylase [Helicobacter suis HS5]
 gi|321147492|gb|EFX42136.1| aminoacylase [Helicobacter suis HS5]
 gi|321149160|gb|EFX43606.1| membrane protein [Helicobacter suis HS1]
          Length = 351

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 56/349 (16%), Positives = 124/349 (35%), Gaps = 23/349 (6%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           + P      +        LY  + F   +L A ++  T + +   F       + F +++
Sbjct: 1   MRPVYFFWLLFGIAFYWMLYLYEDFLMDLLIAGLLCVTVFWLKEFFDKHM--RNLFSSLL 58

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + ++   ++PL FL Y  M  +  L  + +    +                       
Sbjct: 59  CVLVLLSCLVIPLYFLIYKSMDFVFHLNLERLSFFIN-----------KFKTDLLMYVQD 107

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
             +  Q    +         + +I  F+S  G   L +    + +++ LF  +  G +  
Sbjct: 108 FPTLSQYAHKILSNVSAQALMSYILHFSSDIGKYSLKFASDTVMVLVFLFLCFFYGQTFY 167

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             +  +         K I R V  ++R   L   I  + +G+          +       
Sbjct: 168 SYILEVLPFE-KIQSKGIFREVAGILRVVLLTSIINVVLQGVAFAGLVVWFKLDWLSLGV 226

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLVGG- 303
           +      +   G  + +  V+ Y + +GNI  A  + L+  I +  ++D  ++P+L+G  
Sbjct: 227 LYGLSALIPIVGGALVWIPVAFYEMYRGNITGAVVIALYSLILIGGLIDSLIKPWLIGFI 286

Query: 304 -------PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                   +K+  +  FF ++ G+   G  G+ +GP + A   V+ +  
Sbjct: 287 KRRVLKISLKINEILIFFSILAGISKFGFWGIAVGPTITAFFIVLLRVY 335


>gi|218259436|ref|ZP_03475168.1| hypothetical protein PRABACTJOHN_00826 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225090|gb|EEC97740.1| hypothetical protein PRABACTJOHN_00826 [Parabacteroides johnsonii
           DSM 18315]
          Length = 237

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/189 (12%), Positives = 54/189 (28%), Gaps = 6/189 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +    ++  ++  +  L+    P L A ++ +   P    F  K +  S  L+++A +
Sbjct: 16  RILFGLAVISGVIYLIAVLRNALLPFLIAWLLAYMMQPFVKFFQYKVKLKSRLLSILAVL 75

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               L I  +  +    + +      +V    +      R    IP    +   + +   
Sbjct: 76  VSTLLVISLVGVVIVPSVTQ------EVNRTLELMQEHNRGYGHIPMIPQSWAEYLEKNI 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            P  L  L         +  I                SI  + +   +F      +    
Sbjct: 130 DPDQLAQLLSKENIEKAVKQIAPKMWIVLTNTFSILFSITIVFVIFLYFILYPAGLRTDC 189

Query: 189 DSLGEHLFP 197
             L      
Sbjct: 190 QRLDPPDPR 198


>gi|307107520|gb|EFN55763.1| hypothetical protein CHLNCDRAFT_52421 [Chlorella variabilis]
          Length = 734

 Score = 66.9 bits (162), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/374 (12%), Positives = 96/374 (25%), Gaps = 61/374 (16%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
           F++ V    L+ FF   +   I+ F              +   FL +    +++ LF + 
Sbjct: 120 FVVAVMASQLRDFFGITMGTFIVSFVGNGF---------DRRRFLVIAYYTAIVSLFTLF 170

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVP-----------------------RWLSDIP 114
            + +    + E  + VS++   N   + +                          ++   
Sbjct: 171 GVLIIPDVVREGADFVSRLQTENLWVVVLEKMRKGLGEGVMDSLERFLLIASSDDVTRAI 230

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII------ 168
                  +     +    + + +     TN    I      F         +        
Sbjct: 231 DFATLDTIAGNARTQYLGMALQNVLRQYTNAAASIVSDLLSFTTKAFCNLSNWRGAGARC 290

Query: 169 -------------------FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI---SRI 206
                                +I  F    D  +I + + SL        +  +     I
Sbjct: 291 PRGLRPLGTTPDAAAPAVGISLILSFMVVWDLPTIQRGVQSLRTSRVAPIYNTVAPSLEI 350

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF-TAV 265
              +          IA    ++     W   +P    L +   +   IP    I     +
Sbjct: 351 FATLFGKALQAQARIAAVNTILTCLGMWALQLPGVGLLSLFVFVCGFIPIAGVIISTVPI 410

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
               L +        + L      F+    L P +    +KL  L     LV    ++G+
Sbjct: 411 GFVALTEYGFTKLALVLLMITGVHFVEAYGLNPAIYSAHLKLHPLLVLAVLVVAEHSLGV 470

Query: 326 LGLFIGPVLMALIA 339
             L +   L     
Sbjct: 471 WSLLLAVPLTVFTL 484


>gi|313634041|gb|EFS00724.1| membrane protein YdbI [Listeria seeligeri FSL N1-067]
          Length = 319

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 19/302 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  +I V LY L+     +L   I  F    + +  + +       +
Sbjct: 36  EKLKENNTARRVLVFILIGVVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRIPRKLI 95

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 96  VIVLYTLVALFLYVAIVHFLPILIDQISQLVDSLVKIYNNPPD----------------- 138

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 139 NAIAKWFVGFLKESNIEKYLQTGVDFIIVSLSGIGSVGLSFFLALILSLFFSLEKERVTS 198

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q L S    +F        +              +IA+   ++   A +L   P  +
Sbjct: 199 FTGQFLTSKVGFIFKE-AAFFGKKFVGTFGVVLEAQLMIALVNTIITTIALYLMDFPQLL 257

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIK-GNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +L ++  ++ +IP    I      + +    G + +   + L   I   I    L P L+
Sbjct: 258 SLSIMVFVLGLIPVAGVIISCVPLVLIAYSVGGLQDVFYILLTVVIVHAIETYILNPKLM 317

Query: 302 GG 303
             
Sbjct: 318 SS 319


>gi|225389530|ref|ZP_03759254.1| hypothetical protein CLOSTASPAR_03278 [Clostridium asparagiforme
           DSM 15981]
 gi|225044415|gb|EEG54661.1| hypothetical protein CLOSTASPAR_03278 [Clostridium asparagiforme
           DSM 15981]
          Length = 77

 Score = 66.9 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 31/70 (44%)

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            I    + P +VGG + LP +     +  G   MG++G+ +   L +++  + +E++   
Sbjct: 1   QIEGNLIYPHVVGGSVGLPSIWVLVAVTVGGSMMGVVGMLLFIPLCSVLYALLREAVHGR 60

Query: 350 KENKEKISSN 359
              K+     
Sbjct: 61  LAQKKAQRDE 70


>gi|222480000|ref|YP_002566237.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452902|gb|ACM57167.1| protein of unknown function UPF0118 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 341

 Score = 66.5 bits (161), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/313 (15%), Positives = 111/313 (35%), Gaps = 29/313 (9%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM--CLFIVPLLFLFYYGMLEMKE 91
           V+ A+ + +  +PI    + +             ++ +   + +VPLL++ Y    E+ E
Sbjct: 31  VVFAVTVAYVLYPICQWLVGRGLSRRIACVGTTVIAFVAAAILVVPLLYVLYRRRAELIE 90

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           ++ ++       +     + ++   + A+E+W + ++   +                +  
Sbjct: 91  ILEQIPDVVPISVGGFELVIEMVPYVAAAEVWVRQVALALAAAAPRLVLELVVFTFLVYG 150

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
              R G +                               +    +     ++     + +
Sbjct: 151 LLYRPGSVEAAVFG-------------------------VVPAEYHDIPTRLHERTRETL 185

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--L 269
            S ++     A G  ++    +W  G  S V L VI  ++  IP   P           L
Sbjct: 186 YSIYVLQAATAAGTSVLAFVVFWALGYGSPVLLAVIAGVLQFIPIIGPSVLVVALAVGDL 245

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L++        L L   +  F+ D  +R  L     ++     F G VGG+ T+G +GL 
Sbjct: 246 LVEETGRAIAVLVLGLVLVSFVPDAVIRTQLADWTGRISPGLYFVGFVGGILTLGAVGLI 305

Query: 330 IGPVLMALIAVIW 342
           +GP++++L+  + 
Sbjct: 306 VGPLVVSLLLEVI 318


>gi|296186336|ref|ZP_06854740.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|296049137|gb|EFG88567.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 338

 Score = 66.5 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 113/351 (32%), Gaps = 22/351 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI----YSSFISKKEES 58
           +   + +   R++   ++++ LY +K     +L   +  +    +               
Sbjct: 5   KEFFSKESTKRFLFFVVLIIILYLVKSLLNMLLLTFLFTYLMNSLQGVIVRQLKKITPVR 64

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              + ++    +    ++ ++      + E K L+++                 I     
Sbjct: 65  EKLITILLYTLLFTSIVLIIVNYIPLLITETKSLLNQ----------------PIFDFNT 108

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S           + + +       +G D   + A+  G    +  L+I+  +  +    
Sbjct: 109 NSNSDIIQKYLVSAFQQIDLQKYVKSGFDITVQLAANIGKWSANVFLAIMLSLFFMLEKN 168

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +    + +   S    +F  Y+                   +IA    ++      +   
Sbjct: 169 KIITFLEKFKTSKVSVMF-KYFSFFGNNFLNSFGKVIQAQIVIAFANTIISVIMLSILKF 227

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  ++LG +  I++++P    I     +S+     G       + +  A+   +    L 
Sbjct: 228 PQLISLGFMIFILSLVPVAGVIISLIPLSLIAFKIGGFTKVLYVLIMVAVVHSLESYVLN 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P L+   I+LP   TF  L+     MG+ GL IG  L+  I  +    +  
Sbjct: 288 PKLMSAKIELPIFFTFIILIASEHFMGVWGLLIGIPLVMFILDLLDVKVND 338


>gi|169826981|ref|YP_001697139.1| hypothetical protein Bsph_1403 [Lysinibacillus sphaericus C3-41]
 gi|168991469|gb|ACA39009.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 245

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 64/179 (35%)

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           S            I    I L+    +  +I+Q++       +      I + V   +  
Sbjct: 45  SALLTYIPTRLFDIFVYWIVLYMLLLELPTINQKILMPIPFHYHQKIVFIGQRVKLALFG 104

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
                 ++ +G   +  +A++    P  + L ++  ++  IP               +  
Sbjct: 105 FLKAQLLVGLGIFALAIAAFYFLKTPFPLLLALLLVVLDFIPFLDSFILLVPWAIYQVFA 164

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
             +    + +   +  F+V + + P ++G  I L  L TF  +  G +  G LG+ IGP
Sbjct: 165 GDYLYAVVLIVLTVGQFLVRRMIEPKIIGDKIGLSSLSTFIAMFIGFKIFGFLGILIGP 223


>gi|157691213|ref|YP_001485675.1| hypothetical protein BPUM_0420 [Bacillus pumilus SAFR-032]
 gi|157679971|gb|ABV61115.1| hypothetical membrane protein [Bacillus pumilus SAFR-032]
          Length = 340

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 96/317 (30%), Gaps = 29/317 (9%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS----SFISKKEESSTFLAVI 65
           G+ R+ +  ++  +LY L+G    +L   I  F    +            +     +  I
Sbjct: 12  GVKRFSVFVVLATALYLLRGMMNLILLTFIFTFLMNRLEEVIRGFLSRFLKIGQKSVITI 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             + +                 ++++L         H   +P                  
Sbjct: 72  LYILLAGGLTFGGFVFVPIIAKQVEQLFHLGKKIADHPQNLP------------------ 113

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  +  +   F  +   +    F   +   F  + + +I  +I   FF  +   + 
Sbjct: 114 ---FFDVITNVFGDFKISAYFEKGFNFLYTYLTDFSTFSIQVIMSLILSMFFLFEKERLI 170

Query: 186 QQLDSLGEHLFPAYWKKISR---IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           Q ++         ++ +I+       +          IIA    ++   A  + G P   
Sbjct: 171 QFMNKFKTSKISVFYHEIAFFGRKFSRTFGKVLEAQFIIATVNCVLTTIALGIMGFPQLF 230

Query: 243 ALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            L V+  ++ +IP     IS   +SI     G       + L   I   I    L P L+
Sbjct: 231 GLAVMVFLLGLIPVAGVVISLIPLSIIAYTLGGGMYVLYIVLVIVIIHAIEAYFLNPKLM 290

Query: 302 GGPIKLPFLPTFFGLVG 318
               +LP   TF  L+ 
Sbjct: 291 SAKTELPIFFTFIVLIF 307


>gi|213609352|ref|ZP_03369178.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 193

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 52/152 (34%), Gaps = 1/152 (0%)

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
              P       +     +    +  T I+I  GLV         V      G++   +  
Sbjct: 25  MSRPVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLAFALNY 84

Query: 254 IPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           IP    +      I  +L+    ++A  +     +   +    L P ++G  + L  L  
Sbjct: 85  IPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVV 144

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           F  L+     +G +G+ +   L  ++ +  ++
Sbjct: 145 FLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQ 176


>gi|33326380|gb|AAQ08601.1| putative membrane protein [Agrobacterium vitis]
          Length = 260

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 72/249 (28%), Gaps = 5/249 (2%)

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
              Q    + + + D     +    W            ++   +  NG   +   AS+  
Sbjct: 2   ELAQDIPSIGQTMMDRFTPYFQRFHWLHLDRLASGNGPINLDKMLENGGGILSTVASQVT 61

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
              +   +    +++ L        ++          L           +   +   F  
Sbjct: 62  PAIVQTLIFFAALVLFLAGRVSIRKTLIVSFRDRARRLSAIRS---INAIETALGFYFAT 118

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA--PISFTAVSIYLLIKGNI 275
            ++I  G G       W+ G+   V  G    + + +P      ++F      +L   ++
Sbjct: 119 ASVIYAGVGCCALLIAWVGGLTLPVLWGFFAFLSSFVPFLGVTAMTFALAVAGMLTHSSL 178

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                  +        V+  + P ++G  +++     F  ++      G  G  +   L 
Sbjct: 179 LFGLLPAIAFFTVHAAVENLVTPAVMGRRMEINAFGVFVAIIFWTWVWGAAGAMLAVPLA 238

Query: 336 ALIAVIWKE 344
            +   I+ E
Sbjct: 239 LIGKAIFTE 247


>gi|241710578|ref|XP_002412051.1| transmembrane protein, putative [Ixodes scapularis]
 gi|215505112|gb|EEC14606.1| transmembrane protein, putative [Ixodes scapularis]
          Length = 968

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 7/225 (3%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           +        ++   + + + +     +         +       ++F+    +     G 
Sbjct: 664 FMSVFESIWNVLKGNISVVLSVLTTTLSVLFGGGTAVLNFVLNFVVFLTALFYLLRASGE 723

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
                   L   + P    ++   V + +   F     +A   GL     + L  V    
Sbjct: 724 RYKP--LDLFASMLPGSASRLGEAVEEAVAGVFAASFKMAAFYGLYTWLIHTLFEVKMVY 781

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFL 300
               + ++   +P          ++  L   +G +  A C+ L        VD  +   +
Sbjct: 782 IPTALASLFGAVPFIGAYWACLPAVLELWLVQGQVVKALCMLLCQLAPTSFVDCAIYSEI 841

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            GG        T   + GGV  +G  G   GP+L+ ++ V     
Sbjct: 842 KGGG---HPFLTGLAIAGGVFCLGFQGALFGPMLLCVLIVAMNMY 883



 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 23/69 (33%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +    +    +   + L+ F  P+L A++ G    P   S           L   +T  
Sbjct: 37  ILFAAFVSVAGVAVYFILRPFLGPLLWAVLFGSVLHPFKRSLCLLLGGWLDALREDSTPL 96

Query: 70  VMCLFIVPL 78
            + +  +P 
Sbjct: 97  ALGIVCLPF 105


>gi|289805567|ref|ZP_06536196.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 132

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 40/106 (37%), Gaps = 1/106 (0%)

Query: 236 AGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
             +   +  GV+  ++  +P     IS     I  L+    +    +     +   ++  
Sbjct: 1   MDIQFALMWGVLAFLLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIGN 60

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            + P ++G  + +  L  F  L+     +G +G+ +   L ++  +
Sbjct: 61  IMEPRMMGHRLGMSTLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 106


>gi|33865597|ref|NP_897156.1| hypothetical protein SYNW1063 [Synechococcus sp. WH 8102]
 gi|33632767|emb|CAE07578.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
          Length = 334

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/324 (9%), Positives = 94/324 (29%), Gaps = 17/324 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  Q  +  +   ++ + ++ L+     +  A+++      +      +   +     ++
Sbjct: 1   MTAQSALLSLTFIVLALLIWQLRWVLLVLFGAVVVAVALDVLIHQLQDRSRLARPQALLV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
               ++   ++    L    + + ++L   +                          W  
Sbjct: 61  VLAGLLLAGLIIGQLLLPELITQTQQLGKDLPELVNKL-----------------SGWLG 103

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +L       +    +  + R          +  + ++ M++       D  S  
Sbjct: 104 DDPRFAALNQAFGPGVSPENLQSVGRQLLGVAGGAANSVIQVLLMVLLAILLALDPASHR 163

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             + +L           +     + +     GMT+ A    L+      L   P  +   
Sbjct: 164 GMVVALTPRPAREQMALLLDESRQALGGWLTGMTLSATTVFLLTWGGLLLLKAPLALLSA 223

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++  +P   P + T +   L +  +      + ++  I   +    L P L+   +
Sbjct: 224 LVCGLLTFVPTIGPTAATLLPTGLALLQSPQLVVSVLVFRLILQNLEAFLLTPLLLRKTV 283

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLF 329
            L         +     +GL G+ 
Sbjct: 284 NLLPTVALMAQLSLGALLGLPGVL 307


>gi|83747068|ref|ZP_00944112.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
 gi|83726198|gb|EAP73332.1| Hypothetical membrane spanning protein [Ralstonia solanacearum
           UW551]
          Length = 587

 Score = 65.8 bits (159), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 89/339 (26%), Gaps = 17/339 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
                       ++  +I+  L+       P   A  + +       + +  +   S   
Sbjct: 254 SPSRTVDTASYVLVAAMIVAVLWL---HLLPAAIAGFLVYALARRLEARLRARRTLSKRA 310

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             IA   V  +  + L  +       + E    +         V   L D      A  +
Sbjct: 311 KSIAVTGVFLIAALILAAIGLGIGR-LVEHGHGLDGMLLRIADVLDHLRDSLPPAIADYV 369

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     L  + +          I        M  +   L  +          R   
Sbjct: 370 PQSVSELRARLVEMIKEHGHQVSTLGI-DGLRASAMALVGLILGAMMAWSETPDPARSKP 428

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPS 240
             +  L  LG         ++      V+ +      +      + L       G  VP 
Sbjct: 429 LSAALLHRLG---------RLETAFEAVVFAQVKISALNTALAAIYLMGVVPALGLHVPY 479

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             +L ++T +  +IP    +      + + +  ++  A     +  I   +    +   +
Sbjct: 480 SKSLVLLTFVAGLIPVAGNLISNTAIVLMSVAVSLELAVGSLAFLVIVHKLE-YFVNARI 538

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           +G  I          L+      G+ G+   PVL A + 
Sbjct: 539 IGSRIDARAWELILALIVMEALFGVGGVIAAPVLYAYLK 577


>gi|313634634|gb|EFS01105.1| YubA [Listeria seeligeri FSL N1-067]
          Length = 215

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 65/212 (30%), Gaps = 19/212 (8%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  ++ + ++  +I  ++ + +Y               LK   AP++ A I  +   P+
Sbjct: 9   KQLFIDNKFVLGLLIFLLVALDIYVLTKISFIFDPLMVILKTVAAPIVLAGISYYLFNPV 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                 K +    +   +  V ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKK-KWKRGWAIALLYVVIIGLIILLFSFVIPAVKDQIVSLFKTFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
              S         +  + ++S          T +  + I  +         + L    + 
Sbjct: 128 NEFSQSSLFDQLKDKLSTNMSDIMKTLSEKGTSVLNSAITSVGSIVGTVTEVVLAIVTTP 187

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
           + +     +  +DG  +   L  +      A+
Sbjct: 188 LVLF----YLLKDGKKLPDFLLKMLPVNGRAH 215


>gi|14276149|gb|AAK58114.1|AF145699_1 unknown [Staphylococcus aureus]
          Length = 119

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 39/97 (40%)

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
              P    + +I +    + +    L +   +  F+    + P ++G  +K+  L   F 
Sbjct: 1   YLGPTIAISPAIVIAAITSPWMLLKLAVVWTLVQFVEGHFISPNIMGKTLKIHPLTIIFI 60

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           L+   + +G++G+ +G    A++ V+        K  
Sbjct: 61  LLCAGKLLGIVGVILGIPGYAILKVLVTHLFQLFKRR 97


>gi|148670305|gb|EDL02252.1| RIKEN cDNA D730040F13, isoform CRA_b [Mus musculus]
          Length = 800

 Score = 65.8 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 91/255 (35%), Gaps = 6/255 (2%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + +++    +A+     +  +LS +  G    ++           + +S  F     +  
Sbjct: 505 LGDILDWQDIASFVHENIETFLSILSFGFQIWKMKILESLWIVMSRNVSLLFTTVTTLLT 564

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI-V 207
           I  ++    + F+   +  +  +  L     + +   + + SL     P     I    V
Sbjct: 565 ILFYSGTALLNFVLSLIIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIIGQSV 624

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            + IR  F     +A   GL     + + G+        + AI+  +P          ++
Sbjct: 625 EEAIRGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAV 684

Query: 268 YLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L   +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL
Sbjct: 685 LDLWLTQGLGCKAILLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGL 741

Query: 326 LGLFIGPVLMALIAV 340
            G  IGP+L+ ++ V
Sbjct: 742 EGAIIGPILLCILVV 756


>gi|196229736|ref|ZP_03128600.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
 gi|196226062|gb|EDY20568.1| protein of unknown function UPF0118 [Chthoniobacter flavus
           Ellin428]
          Length = 494

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 13/110 (11%), Positives = 37/110 (33%), Gaps = 1/110 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           G +   ++++    + FL+    P   A ++ +   P+ +  +S    S     +     
Sbjct: 28  GAVAIGLIWVFSTVMGFLQPILVPFAVAAVLAYLLEPVVAKIVSW-GTSRKRAVLAVFAI 86

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            +      L++L      +   LV +   + +    +    +D    +  
Sbjct: 87  AIIALTGTLIWLIPAVWSQTAALVERAPASRERLSHIIEDYNDWAHSLEV 136



 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
                    +    +  L   L I+ + I L++F  +  +I++            +  ++
Sbjct: 240 QNSWKFFTKSLGGFLGVLSVLLWIVIVPIYLYYFLIESNNIAESWGDYLPLRASVFKDEV 299

Query: 204 ---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP- 259
                 +   + + F G  ++++  G V G    + G    + +G++   + +IP     
Sbjct: 300 VSTLEEINGYLIAFFRGQLLVSMINGTVTGILLVIFGHSFGILIGLMLCFLGIIPYIGIS 359

Query: 260 ISFTAVSIYLLIKGNIFNAT 279
           + +    +  L +G      
Sbjct: 360 LCWVLAVLLALAQGGTGTWI 379


>gi|325181860|emb|CCA16315.1| conserved hypothetical protein [Albugo laibachii Nc14]
          Length = 749

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 81/253 (32%), Gaps = 5/253 (1%)

Query: 106 VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCL 165
             + +S     + +  L +  LS   S  I   +    +    +    +           
Sbjct: 283 FFQAVSYAYAKVDSVNLTSVQLSDWTSKGIEVSSIAVGSVAQLLLLICTILIAFVSLGIR 342

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
           +  F+    +        I + ++ L          ++   + KVI   F     ++   
Sbjct: 343 AFFFISSLFYLLCTKWDPIERFVEDLLPIQNEKRP-QVVHSIRKVIEGVFFVPLKMSSLH 401

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL-IKGNIFNATCLFLW 284
            LV   ++ +           +T  ++++P   P          + +  +   A  LF  
Sbjct: 402 ALVTLISFSIVRADFVYLATTLTFFISIVPIIPPYLVCVPWALAIGVTSSFIKALILFCV 461

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I   I+D  L        + L    +   +V GV   G  G+  GP+ +  +   ++ 
Sbjct: 462 QYIAFTILDDMLYEK---SIVALNSYVSALSVVFGVYVFGFEGVIFGPLSVCGVYFAYEV 518

Query: 345 SIMAIKENKEKIS 357
           S   I+  ++ ++
Sbjct: 519 SNHGIQAAQDDVT 531


>gi|33862875|ref|NP_894435.1| hypothetical protein PMT0602 [Prochlorococcus marinus str. MIT
           9313]
 gi|33634791|emb|CAE20777.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
           9313]
          Length = 333

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/305 (10%), Positives = 85/305 (27%), Gaps = 17/305 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+     +  A+++      +      +          +  V ++    +    L   
Sbjct: 20  WQLRWVLLVLFGAVVLAVALDVLIEKLQDRLSWPRPLSLAVVLVVLLLGGALVFQLLVPE 79

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + +++EL + V         +      +     +                         
Sbjct: 80  LITQVQELGNLVPTLVSKLKSMLVSNPRLMNLEESFAEQFSWDR---------------- 123

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I  +            +  + ++ M +       D  S  Q + +           ++ 
Sbjct: 124 -IQPLGSQLLGVAGGAANSLIQLLLMSLLAVLLALDPVSHRQMVIAATPRPARQEMAELL 182

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                 +     GMTI A    ++  +   L  VP  +   ++  ++  +P   P + + 
Sbjct: 183 DQCRLALGGWLAGMTISASSVFVLTWAGLALLKVPLALLSALVCGLLTFVPTIGPTAASL 242

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + + + +  +      + L   I   +    L P L+   + L         +     +G
Sbjct: 243 LPLAMALLVSPLLMLQVLLLRLILQNLEAFLLTPLLLRRTVNLLPTVALMAQLSLGALLG 302

Query: 325 LLGLF 329
           L G+ 
Sbjct: 303 LPGVL 307


>gi|163788636|ref|ZP_02183081.1| transporter, putative [Flavobacteriales bacterium ALC-1]
 gi|159875873|gb|EDP69932.1| transporter, putative [Flavobacteriales bacterium ALC-1]
          Length = 297

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 80/296 (27%), Gaps = 18/296 (6%)

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDI 113
           +         VI+ + V+ L +  L        L  KE+++               L   
Sbjct: 2   RWLGRRKVPKVISIIIVLLLAVGGLKLGIELVQLSSKEILATKSEFFPKAEEKIADLKVY 61

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
               +  E         Q  +  +          F+         + L    SI    + 
Sbjct: 62  LLENFGIEFEQDKNVLAQLFQKENLGSTLGFLNSFLTSLLMTIFFVVLWLAESINVHKLL 121

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                +   +                  K    + K +        +++   GL  G   
Sbjct: 122 NNTLLKQKHT----------------SIKTFMKIEKDLIKFIKVKVLVSALTGLFTGLMC 165

Query: 234 WLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGA-IELFI 291
               V   +  G+    +  +      IS   +SI+  ++ +  +    F++   +    
Sbjct: 166 VFFDVSFPIFWGLFAFAINFVQMVGSFISVICLSIFAFVELDPTSTLFFFIFSISMVQVT 225

Query: 292 VDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               L P  +G    +  +     L+      G+ GL +   +   I +I ++   
Sbjct: 226 FGAILEPIFMGKSFSINVIAVLVMLMFWGFLWGIPGLIMAIPITVFIKIILEQFPN 281


>gi|310640166|ref|YP_003944924.1| transport protein [Paenibacillus polymyxa SC2]
 gi|309245116|gb|ADO54683.1| Putative transport protein [Paenibacillus polymyxa SC2]
          Length = 335

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 78/235 (33%), Gaps = 2/235 (0%)

Query: 109 WLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSII 168
            +  +   +  + ++       +++    +T       +       +   +     +SII
Sbjct: 92  QVKQVYLMIQQAYMYPDRNQWNETIIEFMDTLNVQRLFEPGWNAVMKISQLGTQLLVSII 151

Query: 169 FMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLV 228
             +  L          +  +DS     F        R+             +I++   ++
Sbjct: 152 LSLFFLMEKSYITRFTATFVDSKLGWFFKEVG-HFGRMFLGTFGKVLEAQLLISLINCIL 210

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAI 287
             +A W+ G P+ + L +I  ++ ++P     IS   + +     G I     L +   +
Sbjct: 211 TTTALWIMGFPNLLGLALIIFLLGLVPVAGVFISLIPLGLIAFSVGGINYVIYLVILIVV 270

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              I    L P L+     LP   TF  L+     +G+ GL +G  L      + 
Sbjct: 271 IHAIEAYFLNPKLMSSKTNLPIFFTFVVLIFSEHLIGVWGLIVGIPLFVFFLDLI 325


>gi|322370756|ref|ZP_08045312.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549714|gb|EFW91372.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 399

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 46/358 (12%), Positives = 109/358 (30%), Gaps = 29/358 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
               ++ + LV+ +    F   V+  +   + + PIY       +      A       +
Sbjct: 17  WWVFVLLLALVAGFVTYSFVGLVVLGVFGYYATRPIYRRLRVITDSDGVIAA-----LTL 71

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +  +P++ L +Y   ++ +   +      +   V  +L  +P       L         
Sbjct: 72  LVVFLPIVLLTFYAGFQLFQQAQQAFGGTANSTLVTNYLGALPKAQQERVLAAM------ 125

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
             +           +  +     R     +   + I   +   +FF ++   +S  L  L
Sbjct: 126 -QQPQQFVSNPQKTVQTVLHSGLRVTSAVIGGIMLIALSVTLAYFFLKNDDQLSSGLTQL 184

Query: 192 GEHL---FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG----SAYWLAGVPSHVAL 244
                    AY   +   +  V     L + ++++            A     VP    L
Sbjct: 185 FGGKDTTAYAYAVAVDEDLESVFFGNLLFIVVMSLIAAAAYWGTNVVAPGDLHVPMVFVL 244

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNA--------TCLFLWGAIELFIVDKTL 296
             +T + ++IP           +  L    +             L ++  +   +    L
Sbjct: 245 AFLTGVASLIPIVVGKLVYLPVVGYLGIQAVNAGGDYLVFVGGVLVVYFLLLDTLPQTFL 304

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           +P++ G  + +  +   F  + G    G  G F+ P+L  L+    +  +  +     
Sbjct: 305 QPYITGRQLDM--VMMMFAYLLGPILFGWYGFFLLPILFILMLEAVRIVLPELLHGDP 360


>gi|291518611|emb|CBK73832.1| Predicted permease [Butyrivibrio fibrisolvens 16/4]
          Length = 126

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 47/122 (38%)

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
                +P  + + ++  I  ++P   P++   V   +L   +I  A     + AI   I 
Sbjct: 1   MLYMEMPWKIGISILMGITNLVPSVGPVAGAIVGGVVLAFYDIKQALWFLAFTAILQTID 60

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
              ++P L G    +  +     ++ G    G+LG+     ++A+   + K   +  K  
Sbjct: 61  GLIIKPKLFGDSFGISGVWVLIAMLIGGGVFGVLGIIFVVPVVAIGKYLIKNVYLPNKHK 120

Query: 353 KE 354
            +
Sbjct: 121 DD 122


>gi|148239693|ref|YP_001225080.1| permease [Synechococcus sp. WH 7803]
 gi|147848232|emb|CAK23783.1| Predicted permease [Synechococcus sp. WH 7803]
          Length = 333

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/324 (9%), Positives = 102/324 (31%), Gaps = 17/324 (5%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           ++P+ ++  + + ++ + ++ L+     +  A+++           I + +       ++
Sbjct: 1   MSPRNLLAALTLVVLALLVWQLRWVLLVLFGAVVLAVALDVPVHGLIKRFKIQRPLALLV 60

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +++M   +V +  L    + +  +L S +         +      +            
Sbjct: 61  VVLALMVGGLVVIRLLLPELITQFGQLTSLLPSLLGKIRTILASQPQL------------ 108

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                  L       +  + +  +      F     +  + ++ M +       D  +  
Sbjct: 109 -----AELNQTIPDQISWDKVQPVGSQLLGFAGGAANGVIQVLLMSLLAVLLALDPQAHR 163

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
             L +       A   ++       +     GMT+ A    L+  +      VP  +   
Sbjct: 164 GMLIAATPRPARAAMAEVLNSCRAALGGWLAGMTLSATAVFLLTWAGLAALKVPLALLSA 223

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           ++  ++  +P   P + T + + + +  +      + +   +   +    L P L+   +
Sbjct: 224 LLCGVLTFVPTIGPTAATLLPLGIALLISPALMVQVLVLRLVIQNLEAFLLTPLLLRRTV 283

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLF 329
            L         +     +GL G+ 
Sbjct: 284 NLLPTVALTSQLSLGALLGLPGVL 307


>gi|52078982|ref|YP_077773.1| membrane protein YdbI [Bacillus licheniformis ATCC 14580]
 gi|52784355|ref|YP_090184.1| YdbI [Bacillus licheniformis ATCC 14580]
 gi|319648714|ref|ZP_08002925.1| YdbI protein [Bacillus sp. BT1B_CT2]
 gi|52002193|gb|AAU22135.1| conserved membrane protein YdbI [Bacillus licheniformis ATCC 14580]
 gi|52346857|gb|AAU39491.1| YdbI [Bacillus licheniformis ATCC 14580]
 gi|317389133|gb|EFV69949.1| YdbI protein [Bacillus sp. BT1B_CT2]
          Length = 346

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/314 (13%), Positives = 89/314 (28%), Gaps = 23/314 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYS----SFISKKEESSTFLAVI 65
           G+ R+ +  ++   LY  +     +L   I  F    + +          + S   +   
Sbjct: 12  GVRRFSVFVVLAGVLYLFRSMMNLILLTFIFTFLMNRLENVIRGFLNRFIKVSQRLIISC 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
              ++     +  +  +   + ++++L+ +      H   +P         M        
Sbjct: 72  LYAALAIALSIGGVVYYPVIVTQIQQLIKQGKHIASHPDSIP------FLDMITGMFGDI 125

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
           +L+      +       T+   F  +      +           M +   F         
Sbjct: 126 NLTSYLEKGLNFIYTYITDISTFGLQVVMSLVLSMFLLIEKDKVMSLMDKFKTSKIAIFY 185

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
           +++                +   +          IIA     +   A  + G P    L 
Sbjct: 186 EEI------------AYFGKKFTRTFGKVLEAQFIIATINCALTTIALAIMGFPQLFGLA 233

Query: 246 VITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           V+   + ++P    +     +SI     G I     L L   I   I    L P L+   
Sbjct: 234 VMVFFLGLVPVAGVVLSLIPLSIIAYSIGGIAYIVSLVLVIMIVHAIEAYFLNPKLMSAK 293

Query: 305 IKLPFLPTFFGLVG 318
            +LP   TF  L+ 
Sbjct: 294 TELPIFFTFIVLIF 307


>gi|332043137|gb|EGI79334.1| protein of unknown function UPF0118 [Lacinutrix algicola 5H-3-7-4]
          Length = 342

 Score = 65.4 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/323 (10%), Positives = 87/323 (26%), Gaps = 18/323 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             L   F P++ ++ I     P+      +               +  L ++ ++FL   
Sbjct: 24  KILSFIFIPLVFSMFIALLFLPLLRFLKRRGVHK----------ILSILVVLLIMFLGLK 73

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
             +E+ +L SK     +          +    +         +   ++       F+   
Sbjct: 74  LGIELVKLSSK--QIMETDSAFLLNAENKINDLIYDVESVFGIESNKTETSKLSRFINKE 131

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            I         F    L   L   F ++       +  ++  +              K  
Sbjct: 132 FIFDNFGTTLNFITKTLTALLMTFFFVVLWLAESINIENLLNKTIL----KQRHQSIKTF 187

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
             +   +        +++   GL  G A +   V   +  G+   ++  +          
Sbjct: 188 IKIENDLIKFIKVKFLVSFLTGLFTGLACYFFDVSFPIFWGLFAFLINFVQMVGSFITVI 247

Query: 265 VSIYLLIKG--NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           +             +     +  A    +    L P  +G    +  +     L+     
Sbjct: 248 LLSIFAFVELEPSTSLLFFIIAIAGTQVLYGSILEPIFMGKSFSINVITVLIVLMFWGYL 307

Query: 323 MGLLGLFIGPVLMALIAVIWKES 345
            G+ GL +   +   + +I ++ 
Sbjct: 308 WGVPGLIMAIPITVFLKIIMEQF 330


>gi|328958096|ref|YP_004375482.1| hypothetical protein CAR_c18090 [Carnobacterium sp. 17-4]
 gi|328674420|gb|AEB30466.1| hypothetical protein CAR_c18090 [Carnobacterium sp. 17-4]
          Length = 166

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           K+I     K I+  F     ++    ++L   + + G+       +  AI+ M+P     
Sbjct: 13  KEILSQSVKGIKGYFKAALKLSALTFILLCIGFVIIGIDHWGLKALGIAIVDMVPILGSG 72

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                   +                 I + ++ +   PF+ G  I +  L TF   +  +
Sbjct: 73  IIMIPWALVYFFMGNTTMAWQLGLLYIVINVIRQVAEPFVTGREIGVRPLYTFISTIACI 132

Query: 321 RTMGLLGLFIGPVLMALIAVIWK 343
              G  G  +G ++  +I  +++
Sbjct: 133 LLFGPFGAILGALIAIVIKAVYE 155


>gi|332091406|gb|EGI96492.1| hypothetical protein SB521682_1611 [Shigella boydii 5216-82]
          Length = 321

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 78/289 (26%), Gaps = 22/289 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+                     +  + 
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQLPGKF 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 173 QQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             +  IP     ++       +L+    + A  +     +   +    L
Sbjct: 231 FALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNIL 279


>gi|295115005|emb|CBL35852.1| Predicted permease [butyrate-producing bacterium SM4/1]
          Length = 156

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 56/150 (37%)

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
           F   +   SR +     +      II      +      +   P  + LG+   I+  +P
Sbjct: 2   FSREFALFSRRLVMTGNTWLRTQLIIMFITSCLCILGLVMIRNPYCILLGLGIGILDALP 61

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
                +       +L+    +    +     I   +V + L   L+G  + L  L T   
Sbjct: 62  LFGTGAVLVPWSLILLVQKQWYEGIVLAGLFIVCCLVREFLEARLMGDGMGLSPLETLAA 121

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +  G++  G+LG+ +GP+ + +I  + +E 
Sbjct: 122 IYVGLKLFGILGVLLGPIGLLIIEDLVEEY 151


>gi|255525780|ref|ZP_05392710.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|255510513|gb|EET86823.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
          Length = 338

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/351 (13%), Positives = 114/351 (32%), Gaps = 22/351 (6%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPI----YSSFISKKEES 58
           + + + +   R++   ++++ LY +K     +L   +  +    +               
Sbjct: 5   KRIFSKESTKRFLFFVVLIIILYLVKSLLNMLLLTFLFTYLMNSLQGVIVRQLKKITPVR 64

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
              + ++    +    ++ ++      + E K L+++                 I     
Sbjct: 65  EKLITILLYTLLFTSIVLIIVNYIPLLITETKSLLNQ----------------PIFDFNT 108

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
            S           + + +       +G D   + A+  G    +  L+I+  +  +    
Sbjct: 109 NSNSDIIQKYLVSAFQQIDLQKYVKSGFDITVQLAANIGKWSANVFLAIMLSLFFMLEKN 168

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +    + +   S    +F  Y+                   +IA    ++      +   
Sbjct: 169 KIITFLEKFKTSKVSVMF-KYFSFFGNNFLNSFGKVIQAQIVIAFANTIISVIMLSILKF 227

Query: 239 PSHVALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           P  ++LG +  I++++P    I     +S+     G       + +  A+   +    L 
Sbjct: 228 PQLISLGFMIFILSLVPVAGVIISLIPLSLIAFKIGGFTKVLYVLIMVAVVHSLESYVLN 287

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P L+   I+LP   TF  L+     MG+ GL IG  L+  I  +    +  
Sbjct: 288 PKLMSAKIELPIFFTFIILIASEHFMGVWGLLIGIPLVMFILDLLDVKVND 338


>gi|241766971|ref|ZP_04764767.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
 gi|241362535|gb|EER58427.1| protein of unknown function UPF0118 [Acidovorax delafieldii 2AN]
          Length = 300

 Score = 65.0 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 11/245 (4%)

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRW-------LSDIPGGMWASELWTKHLSHPQSLK 134
            +       ELV+ + +A +      R        L  +       E      S     +
Sbjct: 14  AWSLSDGAVELVNSMPVAAKKVRDSLRQRTGGSSPLETVQKAATQIEQAAAENSTAAPPR 73

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +  +       I  +     M  +     +  ++   +F    G  + ++L  +   
Sbjct: 74  RGVQRVVIERPSFNIRDYLWSGTMGLMSALGQLTVVVFLTYFSLASGNLVRRKLVRIAGT 133

Query: 195 --LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                    ++   +   I+S  L     ++  G+  G A+W  G+ +     V   ++ 
Sbjct: 134 SLERKKVTMQVLNEITAQIQSYLLLQVFTSVLVGIATGLAFWALGLENAAVWAVAAGVLN 193

Query: 253 MIPGGAPISFTAVSIYL--LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + P    +  T  S  +  L  G +  A  +     +   IV + + P+L      +  +
Sbjct: 194 LAPYIGSVLVTGASALVGFLQFGTLDMALAVGGASLVIHTIVGQLITPWLTSRASSMSPV 253

Query: 311 PTFFG 315
             F  
Sbjct: 254 AVFVS 258


>gi|16331507|ref|NP_442235.1| hypothetical protein sll0462 [Synechocystis sp. PCC 6803]
 gi|1001163|dbj|BAA10305.1| sll0462 [Synechocystis sp. PCC 6803]
          Length = 366

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 95/305 (31%), Gaps = 11/305 (3%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
              +   F  +          +A + ++   ++ +  +    + + ++L++ V  +    
Sbjct: 46  FNHLSQWFQRR-GVKKQLSIPLAVIILLLALVIVVALIIPPFVDQFQQLLTLVPASIDGT 104

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           +   R ++          L                T      +  +           L  
Sbjct: 105 LQWLRKIARAIDPELTPLLPN----------WQQITGQIRPILQKLAGNGLGLFYSTLGL 154

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            L+++ +I+    F  +  +  Q         + A    I +    ++      + + A+
Sbjct: 155 PLTLLLLIVLSLMFLANPRAYRQGFIRCFPAFYRARVDVILKESEILLEDWLRLVVVSAV 214

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
                      L  V   +AL ++  I  +IP   P+     ++ + +  N +    + +
Sbjct: 215 VVTAATWFGLVLLQVRLPLALALVAGIFVVIPNIGPLISLVPAMAIALLDNAWKPLLVMV 274

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              +  +     +    +G P  +         V  V   GL GL++   L  +  V+ +
Sbjct: 275 LYGLINYFEFHWITLHCMGKPQPILRGVLLLAQVFFVSVFGLFGLWLAVPLTLVGQVLVQ 334

Query: 344 ESIMA 348
           E ++ 
Sbjct: 335 EILIK 339


>gi|299534640|ref|ZP_07047972.1| hypothetical protein BFZC1_01387 [Lysinibacillus fusiformis ZC1]
 gi|298730013|gb|EFI70556.1| hypothetical protein BFZC1_01387 [Lysinibacillus fusiformis ZC1]
          Length = 245

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 65/183 (35%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
               S            I    I L+    +  +I+++L +     +      I + V  
Sbjct: 41  VNVWSTLLTYIPTRLFDIFVYWIVLYMLLLELPTINRKLLTPVPFHYHQKIIFIGQRVKL 100

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +        ++ IG   +  +A++    P  + L ++  ++  IP              
Sbjct: 101 ALFGFLKAQLLVGIGIFAISFAAFYFLKTPFPILLALLLVVLDFIPFLDSFILLVPWAIY 160

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +    +    + +   I  F+V + + P ++G  I L  L TF  +  G +  G +G+ 
Sbjct: 161 QVFAGDYLYAAVLILLTIGQFLVRRMIEPKIIGDKIGLSSLNTFIAMFIGFKIFGFIGIL 220

Query: 330 IGP 332
           IGP
Sbjct: 221 IGP 223


>gi|115467678|ref|NP_001057438.1| Os06g0297700 [Oryza sativa Japonica Group]
 gi|53791981|dbj|BAD54434.1| unknown protein [Oryza sativa Japonica Group]
 gi|113595478|dbj|BAF19352.1| Os06g0297700 [Oryza sativa Japonica Group]
          Length = 648

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 86/271 (31%), Gaps = 7/271 (2%)

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E +      +     +     D+        L    ++        S      N +  I 
Sbjct: 382 EWMDIYRELDSFFRELLITREDLVVKAKGLALQGAEIAKSLLSSSTSVLGGSANLMLSIT 441

Query: 151 RFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                     L++    ++F+ +  +    +G   ++Q+  L   L      +   ++  
Sbjct: 442 LHIVSGAAEVLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLP-LSKQVKDRCVEVIDH 500

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I S  L    IAI +G +    + L  V       V   I A++P   P   +  +   
Sbjct: 501 AISSVLLATAKIAIFQGCLTWLLFKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQ 560

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLG 327
           L+    +    L +   +   I+       +           T   ++GG+      L G
Sbjct: 561 LLMEGRY---VLAIVVTVVHLIIMDYGTTVIQEDIPGYNGYLTGLSIIGGMALFPNALEG 617

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +GP++M ++  +       +  + E+ SS
Sbjct: 618 AILGPLIMTVVMALKNLYTEFVLADSEETSS 648


>gi|330508411|ref|YP_004384839.1| hypothetical protein MCON_2605 [Methanosaeta concilii GP-6]
 gi|328929219|gb|AEB69021.1| Domain of unknown function protein (DUF20) [Methanosaeta concilii
           GP-6]
          Length = 355

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 94/277 (33%), Gaps = 3/277 (1%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
            + ++     KK+ SS    ++  + ++ L +     L       ++   +   +     
Sbjct: 46  LYALFFRLTKKKQISSFLSIMLVFILILSLILGITSALLVEL-SYLQSSGAISDVEIDKT 104

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           I      S      W      +                 T     + R  + FG      
Sbjct: 105 INEIDAWSKSFIPAWLYNSIIEIALRYAQEISDIPIAFATWVFPILQRELTAFGSNLPIL 164

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
              +I ++   ++   DG     Q   L         ++    +  +  + F      ++
Sbjct: 165 FAHLIVVVFFTYYLLIDGKVFIDQAVDLVPQEKQGIVRRFLDELYSIYHTLFTVYFSTSM 224

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNATCLF 282
             G++    + L G+P    +GV+ A+  ++P    P  F  +++Y LI G++F    L 
Sbjct: 225 LSGVMAAIGFSLLGIPYPFLMGVVVAVFTLLPLLGPPFVFIPIAVYYLIVGDLFRCLILL 284

Query: 283 LWGAIELFIV-DKTLRPFLVGGPIKLPFLPTFFGLVG 318
           ++G + L ++ +  +RP L     ++  + T      
Sbjct: 285 VFGTVVLMVIPENVIRPHLAMMSSRIHPILTLLAYTA 321


>gi|28210953|ref|NP_781897.1| putative permease [Clostridium tetani E88]
 gi|28203392|gb|AAO35834.1| conserved putative permease [Clostridium tetani E88]
          Length = 328

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/350 (14%), Positives = 114/350 (32%), Gaps = 22/350 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           MR  +   +      ++ II++   FLK +F PV     I +TS PIY+      +++S 
Sbjct: 1   MRNELRYKKLFYCISLLIIIILVTMFLKKYFKPVFVVFFIVYTSTPIYNVMFKISKKNSK 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +++ + V  + I+  +++          +V     +      +   L+     +   
Sbjct: 61  LNGLLSILIVNFIIIILFIYMGNLVYKIKDTIVLGFQRSYLFIEEILINLNLDSNLIGVK 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
                + S  +S  +       T                     ++     I  +F   D
Sbjct: 121 IEEYYNSSIIKSNLVKKGAVYTTES------------------IINYFIGNIIAYFILVD 162

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
            + I  ++  +       +       +  +I+        + +         +    + +
Sbjct: 163 KYVILNKIKDIIPQNKVTFAFNRYIDIKNIIKLE----LTLVLITTFQTILGFMALNIEN 218

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            V +G+    + + P    I      I   I    +      L   I L I    +    
Sbjct: 219 AVEIGMFCGFLDLFPYVGTIMVFLPLILYKILIKNYIIAFGLLCLYILLIINRNIMEAKF 278

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           V   +K+  +        G +T G+LG+ I P+ + +   I+ E ++  +
Sbjct: 279 VSSTLKVHPIVIISSFYIGFKTFGILGIIIAPLYVLICKSIYSEGLIDCR 328


>gi|304313003|ref|YP_003812601.1| hypothetical protein HDN1F_33860 [gamma proteobacterium HdN1]
 gi|301798736|emb|CBL46969.1| Hypothetical protein HDN1F_33860 [gamma proteobacterium HdN1]
          Length = 381

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/335 (13%), Positives = 97/335 (28%), Gaps = 20/335 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
            R  I    L     + GF  P++ A  I F      +    K   S +  +   T+++ 
Sbjct: 7   FRAFIFVSGLFIASVIAGFL-PLIFASFIAF---GAVTVMSRKLVSSGSQSSRSHTIAIT 62

Query: 72  CLFIVPLLFL--FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
            L +V +  L     G  ++    + +    +    +    +       +  L  +    
Sbjct: 63  ILAVVVVAILTGIGLGTSKLLHESNNLRPLAKEITNILDSANSWAPDWLSELLPEQDELL 122

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             +   + E   K +            G   L   +  +  + +       G        
Sbjct: 123 SHTSNWIKENSAKISHAGIAT--LKTVGYTLLGLIIGAMVAVNSAIKSNNRGPHAMLVFA 180

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVI 247
            +         +++      V+ +      +      + L     + G+  P    L V+
Sbjct: 181 QV---------RRLYEAFWSVVGAQIKISALNTALTAMYLLIYLPVVGLHLPLAKTLVVV 231

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
           T I  ++P    +      + L +      A     +  +   +    +    VG  I  
Sbjct: 232 TFIAGLLPVVGNLISNTAIVLLSLTHGFLVAMSSLAFLVVIHKLE-YFINARFVGERINA 290

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
                   L+     +G+ G+  GP+  A + V W
Sbjct: 291 KPFEILIVLIVAEHLIGVPGVVAGPIFYAWLKVEW 325


>gi|213029844|ref|ZP_03344291.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 158

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 1/141 (0%)

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +     +    +  T I+I  GLV         V      G++   +  IP    +    
Sbjct: 1   QRALDSVSHYLVLKTAISIVTGLVAWGMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAL 60

Query: 265 VSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             I  +L+    ++A  +     +   +    L P ++G  + L  L  F  L+     +
Sbjct: 61  PPIIQVLVFNGFYDALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLL 120

Query: 324 GLLGLFIGPVLMALIAVIWKE 344
           G +G+ +   L  ++ +  ++
Sbjct: 121 GPVGMLLSVPLTIIVKIALEQ 141


>gi|308067414|ref|YP_003869019.1| hypothetical protein PPE_00627 [Paenibacillus polymyxa E681]
 gi|305856693|gb|ADM68481.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 335

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 81/254 (31%), Gaps = 2/254 (0%)

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            +    +   +  +   +  + ++       +++    +T       +       +   +
Sbjct: 83  YRMVPLIVVQVKQVYLMIQQAYMYPDRNQWNETIIEFMDTLNVQRLFEPGLSAVMKVSQL 142

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT 219
                +SII  +  L          +  +DS     F        R+             
Sbjct: 143 GTQLLVSIILSLFFLMEKSYITRFTATFVDSKLGWFFKEVG-HFGRMFLGTFGKVLEAQL 201

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA-PISFTAVSIYLLIKGNIFNA 278
           +I++   ++   A W+ G P+ + L +I  ++ ++P     IS   + +     G I   
Sbjct: 202 LISLINCILTTIALWIMGFPNLLGLALIIFVLGLVPVAGVFISLAPLGLIAFSVGGINYV 261

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L +   +   I    L P L+     LP   TF  L+     +G+ GL +G  L    
Sbjct: 262 IYLVILIVVIHAIEAYFLNPKLMSSKTNLPIFFTFVVLIFSEHLIGIWGLIVGIPLFVFF 321

Query: 339 AVIWKESIMAIKEN 352
             +        K+ 
Sbjct: 322 LDLIGIKRKQEKDT 335


>gi|149926520|ref|ZP_01914781.1| probable transmembrane protein [Limnobacter sp. MED105]
 gi|149824883|gb|EDM84097.1| probable transmembrane protein [Limnobacter sp. MED105]
          Length = 347

 Score = 64.6 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/331 (12%), Positives = 93/331 (28%), Gaps = 14/331 (4%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWPIYSSFISKKEESSTFLAVIATVSV 70
           +  ++++I       L     P + A++I +  +  +     +         A+   + +
Sbjct: 18  VLIVVVWICAAWFSVLALHLTPAVFAILITYGATTRLAHRLKAWLPALRHVEAIALLLVL 77

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
             + +     L Y    E       V    +    V   L        ++ +        
Sbjct: 78  SAIALGLGASLEYLL--ESGSANVGVPAVLERLSKVLDELRLALPAALSAHVPASIDGVR 135

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
            +           N    +  +               +   +      R    +S     
Sbjct: 136 AAAAAW-----LQNHASQLQTWGGHTLRGVGYVLAGTVIGALLSIQLNRSTGKVS---SK 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVIT 248
               L    + ++      ++ + F    I  +   + L       G  +P    L  IT
Sbjct: 188 HLPRLLRLRFDELIESFTHIVFAQFKISAINTLATAIFLLGVLPALGTPIPLAGTLVSIT 247

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            +  MIP    +    + + + +  ++  A   F+W      +    L   ++G  I+  
Sbjct: 248 FVAGMIPIVGNLVSNTIIVAIALSQSLTMAILAFIWLVAIHKVE-YFLNAHIIGSSIRSK 306

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  ++      GL GL   PVL A I 
Sbjct: 307 AWELLLAMLVMEALFGLAGLVTAPVLYAQIK 337


>gi|251833005|ref|YP_001542366.2| hypothetical protein Dshi_4175 [Dinoroseobacter shibae DFL 12]
 gi|251736469|gb|ABV95885.2| protein of unknown function UPF0118 [Dinoroseobacter shibae DFL 12]
          Length = 339

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 26/317 (8%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           +   AP + AL++G    P+                ++         +  +         
Sbjct: 31  QHILAPTVFALVLGIVISPVADRLYGLGVPRLAVAVLLL-----VATLALIGLALLLVEP 85

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
               L+ ++              S +  G+       ++    Q+ +  +      + + 
Sbjct: 86  LFSLLIDELPRIKVAVAGWIETASGLLRGIETISAEIENSVGAQAAQPQTAVPSVRDALW 145

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
             P FA++  +        ++                                       
Sbjct: 146 LAPGFAAQVFIFVGVLFFFVLTRSELYAGTGPMEQRFR--------------------RA 185

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA-VS 266
            + +   F  +T++ IG G+V       AGV   V  G+  A++  I    P+   A ++
Sbjct: 186 DRAVARYFAAVTLVNIGLGVVTAMVLTAAGVNYAVLWGLAAALLNFILYLGPMMIIAGLT 245

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           I  L++ +   A        +        + P +VG  + +  L  F  +V G+   G +
Sbjct: 246 IAGLVQFSGAQAFLPPFLFLLLNLTEANFVTPLVVGKRLAMNPLLIFTAIVFGLWLWGPV 305

Query: 327 GLFIGPVLMALIAVIWK 343
           G  +   ++    V+ +
Sbjct: 306 GAIVALPVLLWAGVVMR 322


>gi|218198014|gb|EEC80441.1| hypothetical protein OsI_22633 [Oryza sativa Indica Group]
          Length = 542

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 86/271 (31%), Gaps = 7/271 (2%)

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E +      +     +     D+        L    ++        S      N +  I 
Sbjct: 276 EWMDIYRELDSFFRELLITREDLVVKAKGLALQGAEIAKSLLSSSTSVLGGSANLMLSIT 335

Query: 151 RFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                     L++    ++F+ +  +    +G   ++Q+  L   L      +   ++  
Sbjct: 336 LHIVSGAAEVLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLP-LSKQVKDRCVEVIDH 394

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I S  L    IAI +G +    + L  V       V   I A++P   P   +  +   
Sbjct: 395 AISSVLLATAKIAIFQGCLTWLLFKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQ 454

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLG 327
           L+    +    L +   +   I+       +           T   ++GG+      L G
Sbjct: 455 LLMEGRY---VLAIVVTVVHLIIMDYGTTVIQEDIPGYNGYLTGLSIIGGMALFPNALEG 511

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +GP++M ++  +       +  + E+ SS
Sbjct: 512 AILGPLIMTVVMALKNLYTEFVLADSEETSS 542


>gi|284164867|ref|YP_003403146.1| hypothetical protein Htur_1587 [Haloterrigena turkmenica DSM 5511]
 gi|284014522|gb|ADB60473.1| protein of unknown function UPF0118 [Haloterrigena turkmenica DSM
           5511]
          Length = 363

 Score = 64.2 bits (155), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/347 (14%), Positives = 101/347 (29%), Gaps = 21/347 (6%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + +   + + I L   + L  +   VL A+ + + + P Y     +  E     A +  
Sbjct: 10  RRAVWVGLGLLIALAIGFALYAYVGTVLFAIFLYYATRPFYRLLDRRL-EHPNVTATVTI 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           ++V+    V + +     + E+   ++         +   R        +       +  
Sbjct: 69  LAVVVPMFVVVGYAGLVALQELDRFLA------ASDLEAYRSALQPYLSIARERNLDRLR 122

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
               S    S T +   G+  +    S    +          M+  LF+  RD  ++ + 
Sbjct: 123 RLLTSDTGRSITSVLRRGLPGLLERLSTIAGLVFSVLARFFLMLTFLFYLLRDDETLRRW 182

Query: 188 LDSLGE------HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                +          A    +  I    +    +   I A+    +   A   A V + 
Sbjct: 183 FARSVDGDEQIVSFLEAVDDDLETIFVSNLAIVGVAAAIAAVTYLALNMVASGGAVVGTP 242

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGN-------IFNATCLFLWGAIELFIVDK 294
           V L V+  +  +IP              L+                  L   +   I D 
Sbjct: 243 VLLAVLIGVGTLIPAVGMKIVYVPYGLYLLGLALATPTPIWQPIAFFVLSFTVVDTIPDF 302

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
             R  L      +       G   G    G  GLF+GP+++ L    
Sbjct: 303 FARSLLSARS-GVHMGLVLLGYFLGTLAFGWYGLFLGPIVVVLAVHF 348


>gi|332090344|gb|EGI95442.1| hypothetical protein SB359474_3963 [Shigella boydii 3594-74]
          Length = 278

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 90/286 (31%), Gaps = 22/286 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +    + ++  V 
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRPVTITIVVVVM 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           ++      L  L         E +S +   N+        L ++   +       + L  
Sbjct: 73  LIA-----LTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMIGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLALMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAP-ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           ++  +P     IS     I +L+   ++    +     +   ++D 
Sbjct: 232 LLNYVPNIGAVISAVPPMIQVLLFNGVYACILVGALFLVVHMVIDH 277


>gi|299535461|ref|ZP_07048783.1| hypothetical protein BFZC1_05553 [Lysinibacillus fusiformis ZC1]
 gi|298729222|gb|EFI69775.1| hypothetical protein BFZC1_05553 [Lysinibacillus fusiformis ZC1]
          Length = 338

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/324 (10%), Positives = 95/324 (29%), Gaps = 25/324 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            ++ +    +  F  PV  A+ + F+++PI +        +    A+I  V ++    + 
Sbjct: 32  VLLFIFYLVILWFVLPVSLAIFLSFSTYPIINFLHRYCRIAYWIAAIIVEVLILTCIFLL 91

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++      ++   E+   +                               S  +S+ +  
Sbjct: 92  VVISINSIIVIFPEIRETLQNF-------------------------PLFSEYESIFVQV 126

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                 +  D I  + +    + + + + +   ++A +F   +               + 
Sbjct: 127 LKEKSLSIFDSIIVYTADLFQLLMKHVIEVFIFLVAYYFALLETRKSRYWFFQYVPKKYR 186

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             W+     + ++          +     L+L + + +      +    I A   ++P  
Sbjct: 187 QEWQSHFAKIMQLFHYFLFVEFQLFTITLLILCAGFMILQFEQAIIKAFIVAFADVLPFF 246

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               F                    L   + + +  +     L    ++L    TFF   
Sbjct: 247 GIGVFLVPMSIYFYFNGNTFLCVAILLLYLFVQLTRQLADSMLWSNTLQLRTFHTFFISA 306

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
             +   G  G+ + P+ + L   +
Sbjct: 307 ASILLFGFYGILLSPIFLFLAVKL 330


>gi|325958841|ref|YP_004290307.1| hypothetical protein Metbo_1090 [Methanobacterium sp. AL-21]
 gi|325330273|gb|ADZ09335.1| protein of unknown function UPF0118 [Methanobacterium sp. AL-21]
          Length = 330

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/324 (11%), Positives = 86/324 (26%), Gaps = 41/324 (12%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            L  +     P+L A+      +P              F   ++ +  +  F V    + 
Sbjct: 26  GLKLVSSILGPILIAMFFSILIYPFLKWL-----NRRGFSYNVSIIITLVGFAVLGGVII 80

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                 + ++VS +   + +        ++       S                      
Sbjct: 81  EILYFSLSQMVSALPSFSINSSSALSSEANYVAQTIISHFPM------------------ 122

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
                              D   + +F+  A  F   +  ++  +L+           + 
Sbjct: 123 ---------------GAVTDIVGTAVFVFFATIFMIYEIPNLKVRLEKGLGKDNNNLNEM 167

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I   +       FL    + +   L     +    +   +  G++T  +  IP    +  
Sbjct: 168 IG--LIDTFIKYFLIRVKVNLFAALGFIGIFLAFDINFALLWGILTFFLGFIPYLGIMIA 225

Query: 263 TAVSIYL-LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               I     K  I  A  + +   I   I +  + P   G  +++     F  L     
Sbjct: 226 AIPPILATWAKYGIQGAILITILFIIVNTIAESIIFPRQTGKGLQMSIYVVFVSLFVWGW 285

Query: 322 TMGLLGLFIGPVLMALIAVIWKES 345
            +G  G  +   L  ++    ++ 
Sbjct: 286 ILGPSGFLLAIPLTIIVIKYLEKY 309


>gi|332159160|ref|YP_004424439.1| hypothetical protein PNA2_1519 [Pyrococcus sp. NA2]
 gi|331034623|gb|AEC52435.1| hypothetical protein PNA2_1519 [Pyrococcus sp. NA2]
          Length = 326

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/346 (15%), Positives = 134/346 (38%), Gaps = 29/346 (8%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     ++  + + II +++  +  FF+P+  A I  +   PI++    +    ++ + +
Sbjct: 1   MNMNDIVIGAVALIIIALAIKTIAPFFSPLFFAFITAYALTPIHAKLEKRIGSRNSAIVL 60

Query: 65  IATVSV-MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            + +     + +V L++     + +    +S +         +P  + ++          
Sbjct: 61  TSILLFGALMILVVLIYTLTPVISQAYNYLSNLENLTIEIPFIPSNIFEL---------- 110

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                        +   L   G + +           L   + + F+   L         
Sbjct: 111 ----------IKNATDKLIEVGKESLISVTFSVPKYLLQVVVYLAFVYFFLTKMGEAKSL 160

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           ++ + + L + +          +  + +   +L + I       +    + ++ +P+ + 
Sbjct: 161 LTFEDEKLMKIISK------GNLTLQALVRVWLLLNIAKGILMTLGFLLFRVSDIPTAIL 214

Query: 244 LGVITAIMAMIPGG-APISFTAVSIYLLIKGNIFNATCLFLWGAIELF-IVDKTLRPFLV 301
            G++T + + +P     + +   S+YL+ +G++  A  L ++G   +  + D T+RP LV
Sbjct: 215 AGLLTVLFSFVPLFEGWMIWLIGSLYLIREGHLLTAIGLAVYGFSLVSPLPDFTIRPKLV 274

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               K   +    G++GG   +GL GL IGP+++ +   + KE   
Sbjct: 275 AREAKFNEVIVLIGMIGGTLGLGLKGLIIGPIVLNVALEMLKEWKR 320


>gi|270619979|ref|ZP_06221844.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
 gi|270317790|gb|EFA29161.1| conserved hypothetical protein [Haemophilus influenzae HK1212]
          Length = 136

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 2/134 (1%)

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY--LLIKGN 274
           G  +  +   L+    + + G+   + L     +  ++P    +  T       L   G 
Sbjct: 3   GKLLEILIVTLITYIIFLIFGLNYPLLLAFAVGLSVLVPYIGAVIVTIPVALVALFQFGI 62

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
                 + +  A+   +    L P+L    + L  L     ++      G  G+F    L
Sbjct: 63  SPTFWYIIIAFAVSQLLDGNLLVPYLFSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPL 122

Query: 335 MALIAVIWKESIMA 348
             L+  +       
Sbjct: 123 ATLVKAVINALPQD 136


>gi|23008271|ref|ZP_00049786.1| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 125

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 52/121 (42%), Positives = 75/121 (61%)

Query: 233 YWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           Y LAGVP  V  G ITA+ AMIP GAP++F   ++ LL  G +  A  +   G +  F+ 
Sbjct: 1   YALAGVPHPVLFGAITAVAAMIPFGAPLAFGLAAVLLLAGGAVVPAAIVVAAGFVVTFVA 60

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           D  +RP L+GG  +LPFL    G++GGV T GLLGLF+GP +MA + ++W++   + +E 
Sbjct: 61  DHFVRPVLIGGTTRLPFLWVLLGILGGVETFGLLGLFVGPAVMAALILLWRDFTGSPEER 120

Query: 353 K 353
            
Sbjct: 121 P 121


>gi|308273256|emb|CBX29859.1| AI-2 transport protein tqsA [uncultured Desulfobacterium sp.]
          Length = 205

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 58/180 (32%), Gaps = 3/180 (1%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T    ++                +   +++ + F   +     ++L        P    
Sbjct: 28  ATFNPGWVMNLVGGIFSALSTVLTNTFLILLTVVFILLEAADFPKKLRIFL--KNPERAL 85

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
                  +      +  T+I+   G+V+     + GV S +  G+++ ++  +P    I 
Sbjct: 86  SAIEKFSRNANRYLVIKTLISATIGVVIWLWLLIIGVDSPLLWGMLSFLLNYVPNIGSII 145

Query: 262 FTAVSIYLLIKG-NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                  L +    + +A    L   +   +V   + P L+G  + L  L  F  +V   
Sbjct: 146 AALPVALLALVQLGVGSALLTILGFVVVHIVVGNIIEPKLMGKGLSLSTLVVFLSMVFWG 205


>gi|254519193|ref|ZP_05131249.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226912942|gb|EEH98143.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 318

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/339 (14%), Positives = 110/339 (32%), Gaps = 27/339 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+      + I   +   II +    +K +F P +  +I+   + P+Y  FI K     +
Sbjct: 1   MKLYDTYNKIINLVITFIIISLITLLIKNYFQPFIIVVIMILITQPVYKFFI-KTNLPKS 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             A+++ + +     V + +     +    +                            S
Sbjct: 60  ICAILSLLIINIFIFVIIFYFGNTILSLFYKFYRN----------------------NMS 97

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E+     +    L       L+T    F      +  ++  D  +S     I  +F   D
Sbjct: 98  EVDAFIKNMKILLNFDLNKMLQTLSGFFSSNMIMQGAIVTGDSLVSYFLANIIDYFILVD 157

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              I   L +L      + + +  + + +V +     + + A          + + G+ +
Sbjct: 158 KNKIYDLLKNLFPQEIISNFMEKIKNLKEVFKIEVRLIILSAFII----TLGFKILGIHN 213

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG + AI+ ++P           I   I    +      +   +    V + L    
Sbjct: 214 SIFLGSLCAILDILPFVGTTIVFMPIIIYNIIMKRYLLVIGLISLYLLERFVREILEAKF 273

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           +   +++  L     +  GV+  G +G+  GP+   +  
Sbjct: 274 LSSKLEIHPLIVIVSIYVGVKMFGFVGIIAGPIYSIIAK 312


>gi|16769548|gb|AAL28993.1| LD38235p [Drosophila melanogaster]
          Length = 588

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 82/267 (30%), Gaps = 2/267 (0%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 317 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILS 376

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 377 LVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSI 436

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 437 TVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 496

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                    L L+  +  F V  +    +               + GG+  +G  G   G
Sbjct: 497 LAQDRFYAGLILF--LLQFFVPSSFETAIYADLKGGHPYLNGLAIAGGMYWIGWQGAIFG 554

Query: 332 PVLMALIAVIWKESIMAIKENKEKISS 358
           P+++     +++ + +A++ ++E  +S
Sbjct: 555 PLMLCFFIGLFEVATLAMRSHQEPRNS 581


>gi|217077216|ref|YP_002334934.1| membrane protein [Thermosipho africanus TCF52B]
 gi|217037071|gb|ACJ75593.1| membrane protein [Thermosipho africanus TCF52B]
          Length = 334

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/344 (8%), Positives = 93/344 (27%), Gaps = 16/344 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +      I  +I +    +      +    ++      + + F    + S+    ++  +
Sbjct: 7   KAAFFVGIYALIFLIFCIIFDTILNIFVFTLMSVLIVNLIAKFFKLIKISTKSSIILGLI 66

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
               + I  ++ +      +  E ++ +    ++                A E + ++  
Sbjct: 67  IYFFIIIYGIILIIPSVAQQFGEFIATINSVFEN---------------KAWESYLENNP 111

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              S       +++    D      +        + ++I + I+   +       +    
Sbjct: 112 DLLSGVNDVMNWIRPKLNDLTTSLLNNIAKGTPTFFITIFYSILLTIYILLYSSWLKNTF 171

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
            +L               V   + +    + I A+   +                L    
Sbjct: 172 PNLFPKDIRNDVATFFDKVYSTLSNFVNVVVINAVITAIAFYIVSSFYFKELAAILSFWA 231

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  +IP               +   +     + ++       +   +   ++   + L 
Sbjct: 232 GITNLIPIVGVFFEYVPVFLFSLTLGLKGFIIVNIFVIAIHLAL-FIIFVNVMKMNLNLN 290

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
            +     ++   +  GL+G F    L+  I   W++ +    E 
Sbjct: 291 PVLMIIAIIIVNQIFGLVGTFFAVPLLIFIVAYWEKFVKPKFET 334


>gi|65321758|ref|ZP_00394717.1| COG0628: Predicted permease [Bacillus anthracis str. A2012]
          Length = 133

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 52/121 (42%)

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
               G V   ++W  G+   + LG+I  +  +IP   PI     ++ +    +       
Sbjct: 1   MFSIGGVSVLSFWFIGMKYPLLLGIIIGVTDIIPYFGPILGAIPALMIAATVSTSLLIKA 60

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            +  AI  F+    L P++VG  +++  +     L+ G    G++GL I   ++A+I  +
Sbjct: 61  GITIAILQFVESNILSPYIVGKSLRMHPVIIMLALLVGGEVAGIVGLLISVPVLAVIRTV 120

Query: 342 W 342
            
Sbjct: 121 I 121


>gi|255067966|ref|ZP_05319821.1| putative membrane protein [Neisseria sicca ATCC 29256]
 gi|255047743|gb|EET43207.1| putative membrane protein [Neisseria sicca ATCC 29256]
          Length = 352

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/331 (14%), Positives = 105/331 (31%), Gaps = 9/331 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMC 72
           + + L  L  L   F P+L A+I+ +        +      +    +TFL        + 
Sbjct: 14  ILMGLALLAVLYFHFLPLLLAVILTYVFITKTNGLILWLRRRTLTRNTFLHKSLNAHNIN 73

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L    L       ++ +  L    ++   H   +   L+ I      S    + + +   
Sbjct: 74  LISTTLTIGIVLTVILLMSLGIYQLIHGGHIPVMLTKLAAILEDTKNSSSLPQSVLNMLP 133

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                        I+      +R         + I+  II          ++ +    + 
Sbjct: 134 NNTAEIKAYAVKLIEEYSAALTRISKNSFTSFVYILIGIIIGAMLSFHRLNMRKNRRKMP 193

Query: 193 EHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
                   + ++      +V  +      I     G+ L     L GV  P  + + VI 
Sbjct: 194 PFKAELVRRIVNFETSFERVFLAQVKISLIDTALTGVYLYLILPLFGVELPFKITVLVIA 253

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+  
Sbjct: 254 FIVGLIPVAGNLISNTIIIILSLGASLYVAVASLVFLVVIHKLE-YFLNAKIIGSEIESS 312

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  +V   R  G+ G+ + PV  A + 
Sbjct: 313 AWELLVAMVVFERIFGVGGIIVAPVYYAYLK 343


>gi|82541718|ref|XP_725080.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479952|gb|EAA16645.1| hypothetical protein [Plasmodium yoelii yoelii]
          Length = 856

 Score = 63.1 bits (152), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 79/253 (31%), Gaps = 5/253 (1%)

Query: 101 QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIF 160
           ++      +++ I    ++ +         + +   +   L    I F+  F   F M  
Sbjct: 293 ENNFKFKDFINYINNIFFSLKKIEDIGKLTKYIIFNNSYGLLKIMIFFVLIFL-NFFMFT 351

Query: 161 LDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTI 220
            D  +  +    AL++      S+   L  L   L           + K +++  +    
Sbjct: 352 FDAIIQAMIFFTALYYLTLSKKSVLNYLKDLL--LVVDPSSIFFYNITKSLKAIIICTLK 409

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
                 + +   +     P      ++  I+++IP  +P     + +  L          
Sbjct: 410 RIYFYTMYIWLIFSFFQFPIIYVPTLMCMILSLIPIISPEILILIIVLHLWIIQKQKIIS 469

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + L+  I  F +       +      +        L   + T G  G+ +GP + ++  +
Sbjct: 470 VILF--IVNFFIYLYFTTTIYTEIPYIHAWLVSLSLFLSITTFGSKGVILGPFIASIPLI 527

Query: 341 IWKESIMAIKENK 353
           + + +I       
Sbjct: 528 LHQIAINKNNAEN 540


>gi|154150834|ref|YP_001404452.1| hypothetical protein Mboo_1291 [Candidatus Methanoregula boonei
           6A8]
 gi|153999386|gb|ABS55809.1| protein of unknown function UPF0118 [Methanoregula boonei 6A8]
          Length = 351

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/337 (11%), Positives = 103/337 (30%), Gaps = 23/337 (6%)

Query: 7   NPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
             + ++   ++ II++ +         +L AL++    +P       +       + ++ 
Sbjct: 10  TERVLLCLGLLVIIVLGIKMTGSVVTILLVALVLALLLYPATRWLQQRGLPYPAAVGMVT 69

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            ++V+C+            ++    +++ + L  Q        +S   G    S  +   
Sbjct: 70  LIAVICVV-----LFVELTVMSFNVIITDLPLYQQELALRLGDISTFLGSYGISTGFLFS 124

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                +  I +      N    +          F     +   +             +  
Sbjct: 125 SVPNLAAIIPALVSSLANLSADMMDLFFIAVTTFFILLEAPPMISRTEEMLKESPEKLWH 184

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
                               +   +    +  T      G++ G +  L GV + V  G+
Sbjct: 185 -----------------LAKMSGFVVDFMVVRTETNFVHGILFGGSLALMGVHAAVLWGI 227

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLI-KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +T ++  IP    I     +I+    +  I+ A  +     +   IV+  +  +L     
Sbjct: 228 LTFVLGYIPYFGLILAAIPAIFFAWLQFGIWGAVAVVAIVCVLNLIVENPVFSYLASRKF 287

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++P L   F ++     +GL G+        ++  + 
Sbjct: 288 EIPALVVIFSVIFWGWLLGLAGMLFSVPFTLMVVTLV 324


>gi|330903708|gb|EGH34280.1| hypothetical protein PSYJA_37244 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 115

 Score = 63.1 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 60/113 (53%)

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            + LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   +  VD  L+P+L
Sbjct: 2   ALVLGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAIFLGIWGMFIISGVDNVLKPYL 61

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           +     LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +   
Sbjct: 62  ISRGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSERARP 114


>gi|215433125|ref|ZP_03431044.1| putative transmembrane protein [Mycobacterium tuberculosis EAS054]
 gi|289756269|ref|ZP_06515647.1| conserved transmembrane protein [Mycobacterium tuberculosis EAS054]
 gi|289696856|gb|EFD64285.1| conserved transmembrane protein [Mycobacterium tuberculosis EAS054]
          Length = 280

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 13/262 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    M  +L  L   +    PVL AL++     P      S+          +  +
Sbjct: 23  RFLVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPRAVAVTLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    L F+    +  +  LV++V  +                  W  E       
Sbjct: 82  SGFAVLGGILTFVVSQFIAGLPHLVTEVERSIDSARR------------WLIEGPAHLRG 129

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                   +      N    +   A        +   + + ++  L FF   G SI Q +
Sbjct: 130 EQIDNAGNAAIEALRNNQAKLTSGALSTAATITELVTAAVLVLFTLIFFLYGGRSIWQYV 189

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +   R     +        ++A+ +   +G+   + GVP  + L  + 
Sbjct: 190 TKAFPASVRDRVRAAGRAGYASLIGYARATFLVALTDAAGVGAGLAVMGVPLALPLASLV 249

Query: 249 AIMAMIPGGAPISFTAVSIYLL 270
              A IP    +    +++ + 
Sbjct: 250 FFGAFIPLIGAVVAGFLAVVVA 271


>gi|261365714|ref|ZP_05978597.1| putative membrane protein [Neisseria mucosa ATCC 25996]
 gi|288565735|gb|EFC87295.1| putative membrane protein [Neisseria mucosa ATCC 25996]
          Length = 352

 Score = 62.7 bits (151), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 104/331 (31%), Gaps = 9/331 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMC 72
           + + L     L   F P+L A+I+ +        +      +    +TFL        + 
Sbjct: 14  ILMGLALFVVLYFHFLPLLLAVILTYVFITKTNGLILWLRRRTLARNTFLHKSLNAHNIN 73

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L    L       ++ +  L    ++   H   +   L+ I      S    + + +   
Sbjct: 74  LISTTLTIGIVLTVILLMSLGIYHLIHGGHIPVMLTKLAAILEDTKNSSSLPQSVLNMLP 133

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                        I+      +R         + I+  II          ++ +    + 
Sbjct: 134 NNTAEIKAYAVKLIEEYSAALTRISKNSFTSFVYILIGIIIGAMLSFHRLNMRKNRRKMP 193

Query: 193 EHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
                   + ++      +V  +      I     G+ L     L GV  P  + + VI 
Sbjct: 194 PFKAELVRRIVNFETSFERVFLAQVKISLIDTTLTGVYLYLILPLFGVELPFKITVLVIA 253

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+  
Sbjct: 254 FIVGLIPVAGNLISNTIIIILSLGASLYVAVASLVFLVVIHKLE-YFLNAKIIGSEIESS 312

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  +V   R  G+ G+ + PV  A + 
Sbjct: 313 AWELLVAMVVFERIFGVGGIIVAPVYYAYLK 343


>gi|55378831|ref|YP_136681.1| hypothetical protein rrnAC2127 [Haloarcula marismortui ATCC 43049]
 gi|55231556|gb|AAV46975.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 236

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 75/216 (34%), Gaps = 2/216 (0%)

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKI 203
              + +   A           L  +   I ++       +  + +       +     ++
Sbjct: 21  AARETLTAVAVDLAAESPVLALKAVLFSILVYAMLWRPQAPKKAVYRTVPASYHEVVNRL 80

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
            + +   + + ++     A G  +V    +WL G     AL V+  I+  +P   P    
Sbjct: 81  HQRLRGTLYAIYVLQAATAFGTFVVAWVVFWLLGYQGAFALAVVAGILQFVPVIGPSVVV 140

Query: 264 AVSIYLLIKGNIFNATCLFLWG--AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
                  I         L          F+ D  +RP L      LP    F G  GGV 
Sbjct: 141 LTIAVADIINGNITGAVLVTVFGLVFVGFLPDAVIRPKLARYTTGLPASLYFVGFTGGVL 200

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           T+G++G   GPV++AL+  +        + ++++++
Sbjct: 201 TLGVIGFIAGPVVIALLVELSSLLTSERQGDQQRLT 236


>gi|195061543|ref|XP_001996016.1| GH14051 [Drosophila grimshawi]
 gi|193891808|gb|EDV90674.1| GH14051 [Drosophila grimshawi]
          Length = 820

 Score = 62.7 bits (151), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 5/270 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNISVIMGVTGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           +       + A   K++  +   I
Sbjct: 606 LLLSGGQACIEFILDMIVFFTALFYLLTASQEKYAPMQITKYMGYSASGIKVADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAALLAAAPFLGSYWCAVPAFLELW 725

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 726 LAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 782

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GP+++     +++ + +A++ N+E+   +
Sbjct: 783 FGPLMLCFFIGLFEVATLAMRNNQEEPRRS 812


>gi|329295579|ref|ZP_08252915.1| hypothetical protein Pstas_00795 [Plautia stali symbiont]
          Length = 123

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 44/97 (45%)

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  +  +   G+ I +   +I+    G ++    L  +  I + +VD  LRP LVG   K
Sbjct: 1   MAFLSLIPAVGSAIVWVPAAIFFFATGALWKGLFLVGFFVIVVGLVDNILRPLLVGKDTK 60

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +P        +GG+   G+ G  IGP++ AL    W 
Sbjct: 61  MPDYLILIATLGGMEVYGINGFVIGPLIAALFIACWN 97


>gi|94969261|ref|YP_591309.1| putative transporter [Candidatus Koribacter versatilis Ellin345]
 gi|94551311|gb|ABF41235.1| putative transporter [Candidatus Koribacter versatilis Ellin345]
          Length = 182

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 2/144 (1%)

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            ++  RI  + ++  FL   + ++    +      L GVP         AI   IP    
Sbjct: 1   MRQQLRITGRALKRWFLAQCLDSLIVAAMWWLGLALLGVPWAPLWAFFAAIFQFIPHIGG 60

Query: 260 IS--FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
           +      +   LL          +    A+ + +    ++P ++    ++P   +    +
Sbjct: 61  VLTLIGPLGATLLEGNGWEGTAYVLGLYAVVMVLDGFIVQPMILKRTARVPVWASIVVPL 120

Query: 318 GGVRTMGLLGLFIGPVLMALIAVI 341
                    G+ +   ++A+   +
Sbjct: 121 VMGYFFQFWGILLSAPMLAVFFAL 144


>gi|156551109|ref|XP_001603296.1| PREDICTED: similar to ENSANGP00000014910 [Nasonia vitripennis]
          Length = 861

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 74/268 (27%), Gaps = 5/268 (1%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
              +   +             ++ I      +      +       +     +    I  
Sbjct: 584 AFSVWESLKEGLGKAPLQLFNMTSIQNFAKENVGILMSVLDSVWTILKGNMSVVLGLITE 643

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +       G   L++ LS++    ALF+         + +  L  +  P    + +  + 
Sbjct: 644 LLYIVLMSGSAVLNFALSMVVFFTALFYLLSSSGKTYKPI-ELITNFSPISCHRFATALQ 702

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +   F     +A   G+     + L  V           ++  +P          +  
Sbjct: 703 ESVIGVFTATFKLASFFGMWTWFIHNLFQVKIVYLPSAFATLLGAVPFLDAYFACIPATI 762

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLVGGVRTMGLLG 327
            L          + +   +  F+    +                T   + GGV  +G+ G
Sbjct: 763 ELWF---TQGPLIAIIFFLFHFLACNIVVTEFYKEIKGGGHPYLTGLSIAGGVFCLGIEG 819

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEK 355
              GP+L+  I V    S   ++   E+
Sbjct: 820 AIFGPLLLCCIMVAINLSRRYLQSPSEE 847


>gi|145640160|ref|ZP_01795744.1| hypothetical protein CGSHiR3021_08885 [Haemophilus influenzae
           R3021]
 gi|145274746|gb|EDK14608.1| hypothetical protein CGSHiR3021_08885 [Haemophilus influenzae
           22.4-21]
          Length = 180

 Score = 62.3 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 46/162 (28%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             + +PQ +    I+    +S+YF     AP+L AL++ +      +      +      
Sbjct: 11  RRLSDPQAMGLLAILLFGFISIYFFGDLIAPLLIALVLSYLLEIPINFLNQYLKCPRMLA 70

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++   S + L  V  L L      +   L+S +             L      +    +
Sbjct: 71  TILIFGSFIGLAAVFFLVLVPMLWNQTISLLSDLPAMFNKSNEWLLNLPKNYPELIDYSM 130

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
                +  +   +          +  I    S     F    
Sbjct: 131 VDSIFNSVREKILGFGESAVKLSLASIMNLVSLGIYAFFSAI 172


>gi|198433623|ref|XP_002122006.1| PREDICTED: similar to CG2698 CG2698-PA [Ciona intestinalis]
          Length = 773

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 70/261 (26%), Gaps = 2/261 (0%)

Query: 99  ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
                + +      I                  ++   + + + +          +   +
Sbjct: 509 LLSRIMDLLNMNEVISWLQENVSALMSLGETVLTILRSNISLILSTVSVVWSAVLNGGTL 568

Query: 159 IFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGM 218
           I       +IF                                     +   +   F   
Sbjct: 569 ILNLLLSFVIFFTTLFHLLSVSTDQYKPIQMIGAAIKPFFSETPFETAMQDALSGVFGAS 628

Query: 219 TIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIF 276
             +    GL     + + G        V+ A+  ++P          +     L++GN  
Sbjct: 629 LKMFGFYGLYTWVNHSMFGANLVYMPSVLAALFGVVPLLTTYWVCIPAALEIWLLQGNPL 688

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
            A CL ++  +    VD  +   +           T   + GGV T GL G   GP+++ 
Sbjct: 689 RAICLTVFQFLPTLFVDAAIYKDISSSGGGGHPYITGLAVAGGVYTFGLEGAIAGPLILC 748

Query: 337 LIAVIWKESIMAIKENKEKIS 357
            + V+      A ++  E +S
Sbjct: 749 FLLVVVNMYAAATQKTNENVS 769


>gi|255528340|ref|ZP_05395147.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296188342|ref|ZP_06856734.1| membrane protein, putative [Clostridium carboxidivorans P7]
 gi|255507964|gb|EET84397.1| protein of unknown function UPF0118 [Clostridium carboxidivorans
           P7]
 gi|296047468|gb|EFG86910.1| membrane protein, putative [Clostridium carboxidivorans P7]
          Length = 338

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/341 (13%), Positives = 104/341 (30%), Gaps = 15/341 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +L  +      +  I+ + +Y LK      L   +  +  + +    I    +     
Sbjct: 5   REILRKETTKEISVFIIVAILIYALKNIIDLFLLTFLFTYLIYSLEKIIIVNLRKYIKLK 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            V  T+++  +    L++  Y  +  +      +                  GG     +
Sbjct: 65  EVFITITLYIIIFTLLIYFVYKYIPLIVNQSVILANGF-------------IGGKSQYSI 111

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +  +       N +  I +F +  G   ++  L+++  +  +        
Sbjct: 112 NKVQEYLYPLIGQVDIKGYLKNEVSTIVQFITSLGKWGINIILALVLSLFFMLERTNVRR 171

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            + +   S    ++  Y     +              +IA+   ++      +   P  +
Sbjct: 172 FLIKFKTSRISIMY-KYVVLFWKDFLVFFGKVVQLQMLIAVTNSILSLIMLSVMNFPESI 230

Query: 243 ALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           AL  +  I ++IP    I     +SI     G +     +     +   + +  L P  +
Sbjct: 231 ALAFMIFIFSLIPIVGIIMALIPLSIIAFNIGGMIKVIYVISMIVLLYAVENYVLTPQFM 290

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               K+P    F  L+     MG+ GL +G  L   I  + 
Sbjct: 291 SSKTKIPVFFVFIVLIISQHFMGMWGLLVGIPLFMFILHMV 331


>gi|125596938|gb|EAZ36718.1| hypothetical protein OsJ_21054 [Oryza sativa Japonica Group]
          Length = 456

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 86/271 (31%), Gaps = 7/271 (2%)

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E +      +     +     D+        L    ++        S      N +  I 
Sbjct: 190 EWMDIYRELDSFFRELLITREDLVVKAKGLALQGAEIAKSLLSSSTSVLGGSANLMLSIT 249

Query: 151 RFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                     L++    ++F+ +  +    +G   ++Q+  L   L      +   ++  
Sbjct: 250 LHIVSGAAEVLNFVSQLMVFLWVLYYLITVEGGGATEQVIDLLP-LSKQVKDRCVEVIDH 308

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I S  L    IAI +G +    + L  V       V   I A++P   P   +  +   
Sbjct: 309 AISSVLLATAKIAIFQGCLTWLLFKLFKVHFVYTSTVFAIISALLPILPPWLSSIFAAGQ 368

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLG 327
           L+    +    L +   +   I+       +           T   ++GG+      L G
Sbjct: 369 LLMEGRY---VLAIVVTVVHLIIMDYGTTVIQEDIPGYNGYLTGLSIIGGMALFPNALEG 425

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +GP++M ++  +       +  + E+ SS
Sbjct: 426 AILGPLIMTVVMALKNLYTEFVLADSEETSS 456


>gi|157135530|ref|XP_001663484.1| hypothetical protein AaeL_AAEL013335 [Aedes aegypti]
 gi|108870200|gb|EAT34425.1| conserved hypothetical protein [Aedes aegypti]
          Length = 807

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 86/261 (32%), Gaps = 6/261 (2%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + +        P   + I G + ++      ++    + + +   L  + I  +    
Sbjct: 546 QSIRVTIDEIFINPITKAGIIGFVKSNIGMLLEVADSLWILLRTNLTLLASAIGTLVSVI 605

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
              G   L +    I     L++  +              + +      I + +   I S
Sbjct: 606 LGGGHAVLKFLFHTIIFFTTLYYLLQSSQDRYAPTAITINNSWGPR---IIQALEDSISS 662

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +    +A+  GL     + + G        V+ +I+A  P       +  +   L   
Sbjct: 663 VVVATLKLALFHGLFTWLTHTIVGAHIVYLPAVLASILAAAPFLESYWCSVPAFLDLWLS 722

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                  L     +  FIV     P +            T   + GG+   GL G  +GP
Sbjct: 723 QDR--FWLGALLVLVHFIVPSNFNPIIHSEIKGGGHPYLTGLSIAGGMYLFGLEGALLGP 780

Query: 333 VLMALIAVIWKESIMAIKENK 353
           +L+ ++ V+++ ++ AI+++ 
Sbjct: 781 LLLCVMVVLFEVTMSAIRDSP 801


>gi|319792301|ref|YP_004153941.1| hypothetical protein Varpa_1620 [Variovorax paradoxus EPS]
 gi|315594764|gb|ADU35830.1| hypothetical protein Varpa_1620 [Variovorax paradoxus EPS]
          Length = 361

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/337 (11%), Positives = 101/337 (29%), Gaps = 15/337 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----STFLAV 64
           +G+M    + ++   +  +     P L  + IGF     ++  + K         +  A 
Sbjct: 25  RGVMLASYLLMLGALMLVMWEHLLPGLICVCIGFLLTRWFARLLEKGLLRIPAMRSSAAG 84

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A V  + + ++    L   G+ + +E +       +  +                EL +
Sbjct: 85  WAGVLAVIVVLLAPAALVTLGLSQAREYIVDAPDQYRELLD--------YTARTVLELRS 136

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           K      +        ++    +++   A    M    +   ++F  + L        + 
Sbjct: 137 KLPPDIATYLPEGAAEIQRVIANYLRAQAGSLAMAGRAWLHGLLFSYVGLIVGSLAAVAA 196

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHV 242
           +               +       +++ + F       +   + L     L G  +P   
Sbjct: 197 APLRRKPLAEQLHQRVETFGEAFAQIVAAQFWIAAFNTLLTAIFLLFLMPLWGAHLPYTP 256

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
           AL  +T +  ++P    +   +V   + +  +   A    ++  +        +   +VG
Sbjct: 257 ALITLTFLAGLVPIVGNLVCNSVITLVGLSVSPVTAAACLIFLIVIHKAE-YVINAKVVG 315

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++        +       G  GL   P+  A + 
Sbjct: 316 ARTQMSVWELLAVMFVAEAVFGPAGLVAAPLYYAYLK 352


>gi|154249893|ref|YP_001410718.1| hypothetical protein Fnod_1214 [Fervidobacterium nodosum Rt17-B1]
 gi|154153829|gb|ABS61061.1| protein of unknown function UPF0118 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 335

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/302 (7%), Positives = 73/302 (24%), Gaps = 16/302 (5%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
             + + +        ++ +    + I   + +      ++      +             
Sbjct: 49  RVLMRIKVPYPIAVTLSLLIYFGVLIYAFVNIIPPVFKQVNSFYEFMKNILDS------- 101

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
                      E +         +      +      + I   A        ++ + I +
Sbjct: 102 --------KYWENYLVDNPELSEIIGKIAEWASPKINELITTLAVNLAKSVPNFLVVIFY 153

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            I+   +        ++ L  L         +   + +   + S    + + A    +  
Sbjct: 154 SILFTVYITIYTNWTTKSLPGLFPKKVRGLVEDFLKKLGIALSSYVDVLLLGAFIVSIAF 213

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
              +        + L     +   IP    +      + + +   + N   + +   +  
Sbjct: 214 YILFSFYLPEYKILLAFWGFVTNFIPIVGVVIEWIPILIVSLGLGLKNFIIVNIVVMLIH 273

Query: 290 FIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                    F++     +  +     +       GL+G F    +      +W E +   
Sbjct: 274 LGA-FLFFIFIMKKRADINPVLMLIFIFLVGILYGLVGTFFAVPVAIFFVTLWNEFVKNE 332

Query: 350 KE 351
            E
Sbjct: 333 LE 334


>gi|307193410|gb|EFN76235.1| Transmembrane protein C9orf5 [Harpegnathos saltator]
          Length = 874

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 69/256 (26%), Gaps = 5/256 (1%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +         +  +          ++ I   +  +      +       +     +    
Sbjct: 597 ITSAYNAWESLKDSIGKTPLQMFNMTSIQNFVKENIGILMSVLDSVWSIVRGNMSIILTI 656

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +       G   L++ LS +     LF+         + ++ L     P    + + 
Sbjct: 657 FTELFYVVLMSGSAVLNFVLSTVVFFTTLFYLLSSSDKTYKPIE-LTTTYSPISCHRFAV 715

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +   F     +A   G+     + L  V           ++  +P          
Sbjct: 716 ALQEAVIEVFAATFKLASFFGMWTWFIHNLFQVKIVYLPSAFATMLGAVPFLDAYFACIP 775

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLVGGVRTMG 324
           +   L        + + +   +  F+    +                T   + GG+  +G
Sbjct: 776 TTVELWF---TRGSMIAILFFLFHFLPCNIVVTEFYKEIKGGGHPYLTGLSIAGGIFCLG 832

Query: 325 LLGLFIGPVLMALIAV 340
           + G   GP+L+  I V
Sbjct: 833 VEGAIFGPLLLCCIMV 848


>gi|195109412|ref|XP_001999281.1| GI24426 [Drosophila mojavensis]
 gi|193915875|gb|EDW14742.1| GI24426 [Drosophila mojavensis]
          Length = 815

 Score = 61.9 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 84/270 (31%), Gaps = 5/270 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 542 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNLSMIMGVTGEILS 601

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           +       + A   K++  +   I
Sbjct: 602 LLLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPMQITKYMGYSASGIKVADALENSI 661

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 662 TVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAALLAAAPFLGSYWCAVPAFLELW 721

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 722 LAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 778

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GP+++     +++ + +A++ N+E   S+
Sbjct: 779 FGPLMLCFFIGLFEVATLAMRTNQEPRRSS 808


>gi|195399804|ref|XP_002058509.1| GJ14284 [Drosophila virilis]
 gi|194142069|gb|EDW58477.1| GJ14284 [Drosophila virilis]
          Length = 818

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 84/270 (31%), Gaps = 5/270 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 545 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNLSMIMGVTGEILS 604

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           +       + A   K++  +   I
Sbjct: 605 LLLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPMQITKYMGYSASGIKVADALENSI 664

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 665 TVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAALLAAAPFLGSYWCAVPAFLELW 724

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   + GG            + GG+  +G  G  
Sbjct: 725 LAQDRFYAGLILFLLQFFVPSSFETAIYADIKGGG---HPYLNGLAIAGGMYWIGWQGAI 781

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GP+++     +++ + +A++ N+E   S+
Sbjct: 782 FGPLMLCFFIGLFEVATLAMRTNQEPRRSS 811


>gi|307150983|ref|YP_003886367.1| hypothetical protein Cyan7822_1084 [Cyanothece sp. PCC 7822]
 gi|306981211|gb|ADN13092.1| protein of unknown function UPF0118 [Cyanothece sp. PCC 7822]
          Length = 346

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 94/315 (29%), Gaps = 16/315 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           + ++++ + L  L+ ++     + +ALI+      + +     +        +   + ++
Sbjct: 7   VGFILLVLCLYILWQIRQLLLLLFTALILAEALNILVTRLERWR-IKRGIAVLFVLILLL 65

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L       +    + + ++LV  V    Q  I + +  +        + L T       
Sbjct: 66  TLLASMFWLIIPALIEQGQQLVKLVPDGIQQLITLIKSRAAQFDTNLINSLPT------- 118

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              I          ++ I           L   LS++ ++        +     Q L  L
Sbjct: 119 ---IKQIIEQLQPLVNQIANRGLNIFYSSLGNILSLLLLLALTLMLLSNPLPYRQGLIRL 175

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
               +     +I  +  + +    + + +      ++      + G+P   +  +++  +
Sbjct: 176 FPAFYRQRVDEILILCDQTLSRWLMVIMLHMSLMTILSWLGLLIFGIPLAFSQAILSGAL 235

Query: 252 AMIPGGAPISFTAVSIYL-----LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           A IP   P+      I +                  +   I   +  + L   ++   I 
Sbjct: 236 AFIPNIGPVLAMIAPIAIALLEAASWKPWAVIILYSIIYIIIQRLDKQLLAAQVLREHIC 295

Query: 307 LPFLPTFFGLVGGVR 321
           L    T    +    
Sbjct: 296 LLPGYTLLAQIFFAS 310


>gi|153865757|ref|ZP_01997907.1| conserved hypothetical protein [Beggiatoa sp. SS]
 gi|152145121|gb|EDN72092.1| conserved hypothetical protein [Beggiatoa sp. SS]
          Length = 107

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 29/90 (32%)

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G   +   +     +   +    L PFL    + L  +     ++      G+ G+
Sbjct: 18  YFQWGVGPDFFWVLGTYFVIQALDGNLLVPFLFSEAVNLHPVAIILAVLVFGGIWGIWGV 77

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKISS 358
           F    L  L+  +      A  E K + S+
Sbjct: 78  FFAIPLATLVKALLSAWPRAAIEEKNETSA 107


>gi|187926885|ref|YP_001893230.1| putative transmembrane protein [Ralstonia pickettii 12J]
 gi|241665214|ref|YP_002983573.1| hypothetical protein Rpic12D_3642 [Ralstonia pickettii 12D]
 gi|187728639|gb|ACD29803.1| putative transmembrane protein [Ralstonia pickettii 12J]
 gi|240867241|gb|ACS64901.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 341

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 93/330 (28%), Gaps = 17/330 (5%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL--AVIA 66
           + +   +++ +IL  L+       P   A ++ +T         +        +  A   
Sbjct: 14  KTVSYVLVVAMILAVLWLR---LLPAAIAGLLVYTLS---RRLEASLRRRPVLVTHAKAI 67

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            V  + +    +L     G+  + E    +         V   L     G  A  +    
Sbjct: 68  AVIGVSVVAALILAGIGLGIGRLVEHGHGLEGMLTRIADVLDNLRASLPGSVADYIPPSV 127

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                 L  + +          +           +   + +I   +  +    D      
Sbjct: 128 TELRIRLVEMLKEH-----GRQVSTVGIDGLRHSVLALIGLIVGAMVAWSDAPDPTRHKP 182

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
              +L   L        + +  +V  S            G +         VP   +L +
Sbjct: 183 LAAALLNRLGRLTAAFETVVFAQVKISALNTTLAAIYLLGALPVVGQH---VPYSKSLIL 239

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T +  +IP    +   A  + + +  ++  A    ++  I   +    +   ++G  I 
Sbjct: 240 LTFVAGLIPVVGNLISNAAIVVMSVTASLELAVASLVFLVIVHKLE-YFVNARIIGSRID 298

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
                    L+      G+ G+   PVL A
Sbjct: 299 ARAWELILALILMEALFGVGGVIAAPVLYA 328


>gi|298369611|ref|ZP_06980928.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282168|gb|EFI23656.1| membrane protein [Neisseria sp. oral taxon 014 str. F0314]
          Length = 354

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/331 (14%), Positives = 104/331 (31%), Gaps = 9/331 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMC 72
           + + +  L  L   F P+L A+I+ +        +      +    +TFL        + 
Sbjct: 16  ILMGMALLAVLYFHFLPLLLAVILTYVFITKTNGLILWLRRRTLTRNTFLHKSLNAHNIN 75

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L    L       ++ +  L    ++   H   +   L+ I      S    + + +   
Sbjct: 76  LISTTLTIGIVLTVILLMSLGIYHLIHGGHITVMLTKLAAILEDTKNSSSLPQSVLNMLP 135

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                        I+      +R         + I+  II          ++ +    + 
Sbjct: 136 NNTAEIKAYAVKLIEEYSAALTRISKNSFTSFVYILIGIIIGAMLSFHRLNMRKNRRKMP 195

Query: 193 EHLFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
                   + ++      +V  +      I      + L     L GV  P  + + VI 
Sbjct: 196 PFKAELVRRIVNFETSFERVFLAQVKISLIDTALTVVYLYLILPLFGVELPFKLTVLVIA 255

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+  
Sbjct: 256 FIVGLIPVAGNLISNTIIIILSLGASLYVAVASLVFLVVIHKLE-YFLNAKIIGSEIESS 314

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  +V   R  G+ G+ + PV  A + 
Sbjct: 315 AWELLVAMVVFERIFGVGGIIVAPVYYAYLK 345


>gi|163790869|ref|ZP_02185293.1| predicted permease [Carnobacterium sp. AT7]
 gi|159873822|gb|EDP67902.1| predicted permease [Carnobacterium sp. AT7]
          Length = 161

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 56/157 (35%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
              K+I     K I+  F     +A    ++L   +++ G+       +  A++ +IP  
Sbjct: 2   EDVKEILVKSIKGIKGYFKAELKLAALTFILLCIGFFIIGMDYWGIKALGVAVVDIIPIL 61

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                      +                 I + ++ +   PF+ G  I +  L TF   V
Sbjct: 62  GSGIIMIPWALVHFLIGNTTIAWQLGLVYIIVTVIRQIAEPFVTGREIGVRPLYTFISTV 121

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
             +   G  G  IG V+  +I  I++  ++   E  +
Sbjct: 122 VCMLVFGPFGALIGAVVAIVIKAIYEVKMIRKSEYND 158


>gi|322370485|ref|ZP_08045043.1| permease [Haladaptatus paucihalophilus DX253]
 gi|320549902|gb|EFW91558.1| permease [Haladaptatus paucihalophilus DX253]
          Length = 431

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 96/307 (31%), Gaps = 30/307 (9%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
            +  L + + + PIY     +        A  A V+V    ++ + +      +E+ E+ 
Sbjct: 38  FVLGLFMYYATRPIYDRLEHRLG-HPGLTAAAALVTVALPVVLLVSYAVAVSAVEVAEIA 96

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            + +   +  +     LS +                   L   S+      G   +    
Sbjct: 97  GESLQGYEGVLRPYFDLSSLTVHPQ----------RILELAQQSQGEFMRFGGPELLTTV 146

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
           +     F    L +   +   F+  RD   + +   S       +        V + +++
Sbjct: 147 ANVVAAFGTGLLQLFVALAFAFYLLRDDDKLVRWFVSDIGGE-RSTAYTYVEAVDRSLQT 205

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSH--------VALGVITAIMAMIPGGAPISFTAV 265
            + G  + A   GL     Y LA V +           LG++T + +++P          
Sbjct: 206 VYFGNILNAFVVGLAAAVVYNLANVFAPSGLSIPLPTLLGLLTGVASLVPVVGTKLVYVP 265

Query: 266 SIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               L+  +         F    + L+  +   + +  +RP++ G   +L      F  +
Sbjct: 266 IAAYLVVRSFDIGPRTLWFPVAFVALFVVVIDLVAEVIIRPYITGR--ELHVGLMLFAYI 323

Query: 318 GGVRTMG 324
            G    G
Sbjct: 324 FGPLLFG 330


>gi|224045876|ref|XP_002187113.1| PREDICTED: similar to Transmembrane protein C9orf5 [Taeniopygia
           guttata]
          Length = 817

 Score = 61.5 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 15/251 (5%)

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG------IDFIPRFASR 155
           H      WL DI      +     ++    S+       +  N       +  +      
Sbjct: 540 HINRQNSWLGDILDWQDVASFVHDNIETFLSILESLWIVMSRNVSLLFTTVTALVTILFH 599

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQ---QLDSLGEHLFPAYWKKISRI-VPKVI 211
            G   L++ LS++  +  LF+         +    + SL     P     I    V + I
Sbjct: 600 SGTALLNFVLSVVIFLTTLFYLLSSSDEYYKPVKWVISLTPLSQPGPSSNIVGQSVEEAI 659

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 660 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSALAAILGAVPFLGTYWAAVPAVLDLW 719

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +G    A  L ++  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 720 LVQGQGCKALLLLVFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 776

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 777 IGPILLCILVV 787


>gi|262044145|ref|ZP_06017219.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038517|gb|EEW39714.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 137

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 1/112 (0%)

Query: 237 GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
           GVP    L V+     ++  G  +      I+L   G+    T L +W  +    +D  +
Sbjct: 4   GVPYAALLTVVMIFTCLVQLGPLLVLVPSIIWLYWSGDTTWGTVLLVWSCVV-GTMDNVI 62

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           RP L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  
Sbjct: 63  RPVLIRMGADLPMILILTGVIGGLIAFGMIGLFIGPVLLAVSWRLYDAWVHE 114


>gi|167835399|ref|ZP_02462282.1| hypothetical protein Bpse38_02841 [Burkholderia thailandensis
           MSMB43]
          Length = 361

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 82/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +    +   
Sbjct: 78  RHMSSQRARWLAVVLLSAAIVGGLAGLTIAVIEHFEHAVPNAQNLLGQVMQIVDQ-ARTR 136

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              W S L        ++      +             A  FG +     +  +  I   
Sbjct: 137 TPEWISNLLPVDAEQMRAKATGLMSKHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVD 196

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L             + S    +++ +      + A    L L  A  
Sbjct: 197 ----------RHKLRQPLSTALVTRISRFSDAFRRIVFAQIKISALNAFFTALYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           L    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 247 LFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLIVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|163749189|ref|ZP_02156439.1| hypothetical protein KT99_20149 [Shewanella benthica KT99]
 gi|161331259|gb|EDQ02148.1| hypothetical protein KT99_20149 [Shewanella benthica KT99]
          Length = 265

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/204 (9%), Positives = 55/204 (26%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              I   ++  +I+ +   ++ F  PVL   II      +        +      A    
Sbjct: 24  ESAIRIGLLFMLIVWTYDIIRPFVIPVLWGAIIAVALMSLTHKLEKAFKGRRGLAATALA 83

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V  + L ++P + +       +   +  +   +       + ++DIP             
Sbjct: 84  VIGVALLVIPFVLVSGSIFDGVSRTIEVLQSGDVQISGPTQRVADIPVIGDKLYEIWALF 143

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S      +          +  I           + + +S+      +    +   ++S  
Sbjct: 144 STNLEKAVQHFLPEIKTAVGTIAAVIGSSLATLMMFIISLAIAAGFMSHAEKISDAVSII 203

Query: 188 LDSLGEHLFPAYWKKISRIVPKVI 211
              +       +    +  +  + 
Sbjct: 204 AVRVAGQNGEQWITLTAATIFTIW 227


>gi|297520935|ref|ZP_06939321.1| inner membrane protein YhhT [Escherichia coli OP50]
          Length = 248

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 79/257 (30%), Gaps = 21/257 (8%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 68  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 127

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S K+++ T     G+           M  +     +  +   + F   +       L 
Sbjct: 128 MDSEKVVTFTTALMTGLSGAMASVLLLVMTVVFMLFEVRHVPYKMRFALNNPQIHIAGLH 187

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
                              K +       T++++  G+++     L GV   +   V+  
Sbjct: 188 RAL----------------KGVSHYLALKTLLSLWTGVIVWLGLELMGVQFALMWAVLAF 231

Query: 250 IMAMIPGGAPISFTAVS 266
           ++  +P    +      
Sbjct: 232 LLNYVPNIGAVISAVPP 248


>gi|46205309|ref|ZP_00048703.2| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 323

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 85/241 (35%), Gaps = 15/241 (6%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
              PVL AL++     P+      +K   S    V+A ++++ +  V +  +    + + 
Sbjct: 92  IVIPVLIALVLAAAISPLVGLL-RRKGVPSFLATVVALLALVVVLGVVVWLVAAAVVKQW 150

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
            EL  + V          + L         + +    +   QS  + +            
Sbjct: 151 PELRDQAVEGFDELQTYVQNLPFDITEEQIASVRDSLVGLLQSDAVGAGALAG------- 203

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                      +D+      MI+ LFFF +DG +I + L    E    A  ++I     +
Sbjct: 204 -------ASQTVDFVAGFFVMIVVLFFFLKDGPAIWEFLLRPFEGARYARGQRIGETTVR 256

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            +     G  I+A  + + +G    + GVP  + L V+  ++A IP         +   +
Sbjct: 257 TLGGYVRGTAIVAAVDAVAIGIGLAIVGVPLVLPLSVLVFLLAFIPLVGATLAGVLCALV 316

Query: 270 L 270
            
Sbjct: 317 A 317


>gi|150020774|ref|YP_001306128.1| hypothetical protein Tmel_0882 [Thermosipho melanesiensis BI429]
 gi|149793295|gb|ABR30743.1| protein of unknown function UPF0118 [Thermosipho melanesiensis
           BI429]
          Length = 334

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/343 (11%), Positives = 99/343 (28%), Gaps = 17/343 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I   +   I L++           +  L+       + + F++  +       ++  V 
Sbjct: 9   SIYVGIYALIFLITCIIFDSVLNVFVFTLM-SVLIVNLIARFLNFLKIKGKPAIIVGLVI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              L I  ++ +      +    +S +    ++                + E + K    
Sbjct: 68  YFFLIIYGIILIIPVATEQFGSFISTINYVFEN---------------KSWETYIKKNPE 112

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S       +++    +    F  +       + ++I F ++   +       + + L 
Sbjct: 113 LLSGINDLMEWIQPKLNELTNFFLDKIAKGTPTFFVTIFFSVLLTIYTLLYSSWLKKSLP 172

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           ++         +     V   + S    + I A+   +              + L     
Sbjct: 173 NIFPKYIRNICENFLEKVYSALSSFVDVVIINAVITAIAFYILSSFYFKDMAIILSFWAG 232

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  +IP               +   I     + L+       +   +   ++   + L  
Sbjct: 233 ITNLIPIVGVFFEYIPVFLFSLTLGIKGFIIVNLFVIAIHLGL-FVIFVNVMKMHLNLNP 291

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +     ++   +  GL+G+F+   L+  IA  W E I    E+
Sbjct: 292 VLMIISIIIVNQIFGLVGIFLAVPLLIFIAAYWDEFIKPKFES 334


>gi|222479558|ref|YP_002565795.1| permease [Halorubrum lacusprofundi ATCC 49239]
 gi|222452460|gb|ACM56725.1| permease [Halorubrum lacusprofundi ATCC 49239]
          Length = 431

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/365 (11%), Positives = 104/365 (28%), Gaps = 16/365 (4%)

Query: 1   MRETMLNPQGIMRW-MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           + + + +   +  W  ++ + +   Y +  F    +  L   + + PI          S 
Sbjct: 8   LTDHLPSRSRLGWWAFVLLLGVAIAYVVGSFIGLTVLGLFGYYATRPICVRL-RSVTGSR 66

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
              A +  +SV+   ++ L+ +       ++             +     +  +P     
Sbjct: 67  QLAATLTALSVLVPILLLLVVVGLRLFQVVQRQFGD-GEFVGTLVARITGIDALPAEQRE 125

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
             +              S        +  +        ++ L   L+   +         
Sbjct: 126 QLVSLLLNPSSILDAGGSVWSNVGAAVTALQGVVGGLFLLGLATTLAYFLLANDTDVSKT 185

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
               +    DS       A    +  +    +        +  +        A     VP
Sbjct: 186 LTE-LVGGRDSTAYAYAIAVDADLESVFFGNLLFVVASSILATVTYAATNLVAPPGLQVP 244

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG----NIFNATCLFLWGAIELF----- 290
             +  G +T + ++IP           + LL       +    + +F+   +  +     
Sbjct: 245 MVLVAGFLTGLASLIPVVVGKIVYIPIVALLGFQAVSTDQGQGSLVFVGVVLVAYVLLLD 304

Query: 291 -IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
            +    L+P+L G    L  +   F  + G    G  G+F+ P+L  L+    +  +  +
Sbjct: 305 ILPQSFLQPYLSGRR--LNAILLLFAYLLGPILFGWYGIFLMPILFVLVLEAIRIVLPEL 362

Query: 350 KENKE 354
              + 
Sbjct: 363 LSGEP 367


>gi|254432069|ref|ZP_05045772.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
 gi|197626522|gb|EDY39081.1| conserved domain protein, putative [Cyanobium sp. PCC 7001]
          Length = 335

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/305 (9%), Positives = 91/305 (29%), Gaps = 17/305 (5%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           + L+        A+++G       +  + +          +  + ++ +       L   
Sbjct: 21  WELRWVLLVFFGAVVLGVALDVPITLLMRRLRLRRPTALALVLLVLLLVGGWLSQQLLPE 80

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            + ++ +L   +         +   ++ +P    + E                       
Sbjct: 81  LLQQISQLGQLIPEVAARLASMAGRVAWLPRLDQSLERLASWD----------------- 123

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
           G+  +            +  + ++ M +       D  +  + + +L    +      + 
Sbjct: 124 GLQPLGAQLLGMAGGAANTTVQMLLMGLLAILLAFDPATHRRLVIALTPRKWRQPMAGLL 183

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               + +     GMT+ A+   L+  +   L  VP  +   ++  ++  +P   P + T 
Sbjct: 184 DECREALGGWLAGMTLSAVTVFLLTWAGLVLLQVPLALLSALVCGLLTFVPTIGPTAATL 243

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
           + + + +  +      + +   +        L P L+   + L         +     +G
Sbjct: 244 LPLAVALLVSPTKVVQVLVLRLVLQNGEAFLLTPMLLSRTVNLLPTVALMAQLSLGTLLG 303

Query: 325 LLGLF 329
           L G+ 
Sbjct: 304 LPGVL 308


>gi|237803519|ref|ZP_04591104.1| putative lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331025501|gb|EGI05557.1| putative lipoprotein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 118

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 61/107 (57%)

Query: 231 SAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELF 290
             + +AG+P  + LG++T + ++IP G P+ +   + +L+ +G    A  L +WG   + 
Sbjct: 10  IGFLIAGIPGALVLGILTFLFSLIPMGPPLVWLPATAWLVWQGEYGMAVFLGIWGMFIIS 69

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            VD  L+P+L+     LP +    G+ GG+   G +GLFIGP L+A+
Sbjct: 70  GVDNVLKPYLISRGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAV 116


>gi|167945677|ref|ZP_02532751.1| hypothetical protein Epers_03715 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 239

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 69/215 (32%), Gaps = 10/215 (4%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +    APVL++L+I +    + S F  +         ++  +  +    + LL L     
Sbjct: 21  MGDMLAPVLASLVIAYLLEGVVSQFERRA-CPRFPAVILVFICFLLFVALILLGLMPLLS 79

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            ++ EL+ +       G  V   L +    + +     + +S   +              
Sbjct: 80  RQVTELIQQFPAMLSSGQQVLLQLPERYPEILSEAQIKQIISGIHAEI--------GAFG 131

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
             +  ++    +  +   + +I M + +FFF +D   I   ++         +   +   
Sbjct: 132 QQVLSWSLASVVSLITLAVYLILMPLLVFFFLKDKSLILGWINQFFP-KHRRFADTVWSD 190

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
           V + I +   G     I         +   G P  
Sbjct: 191 VDRQIGNYVRGKFWEIIIVWAASFVVFSPDGAPLC 225


>gi|167909485|ref|ZP_02496576.1| hypothetical protein Bpse112_03264 [Burkholderia pseudomallei 112]
          Length = 361

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 80/287 (27%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRTKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 193 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +   +  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVGMGTAIASLVFLVVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|326487734|dbj|BAK05539.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 644

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 10/271 (3%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             + +  +        L      +  ++      +      + S T +       +   A
Sbjct: 378 EWLEIYKELDSFFRELLITREDLVVKAKDLALQGTEIAKSLLSSGTSVLGGSASLMLSIA 437

Query: 154 SRFGMIFLDYCLS----IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            R      +        ++FM +  +    +G   ++Q+  L         ++   ++  
Sbjct: 438 LRILSGAAEVLNFVSQLMVFMWVLYYLITVEGGGATEQVIDLLPVS-KQVKERCVEVIDH 496

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I S  L    IAI +G +         V       V T I A+ P       +  +   
Sbjct: 497 AISSVLLATAKIAIFQGCLTWLLLKFFKVHFVYTATVFTIISALFPILPAWLSSIFAAAQ 556

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLG 327
           L+    +    L +   +   ++       +           T   ++GG+      L G
Sbjct: 557 LLTEGRY---VLAVMVTVIHLVIMDYGTTVIQEDIPGYNGYLTGLSIIGGMTLFPNALEG 613

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +GP++M ++  +       +  + E++SS
Sbjct: 614 AILGPLIMTVVIALKNLYTEFVLADTEEMSS 644


>gi|332030319|gb|EGI70062.1| Transmembrane protein C9orf5 [Acromyrmex echinatior]
          Length = 895

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 70/259 (27%), Gaps = 5/259 (1%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            +           +          ++ I   +  +      +       +     +    
Sbjct: 608 AMSAYSAWENFKDSFGKTPIHLFNMTSIQNFVKENIGILTSVFDSVWSIVKGNISVILTI 667

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
              +       G   L++ LS +     LF+         + ++ L     P    + + 
Sbjct: 668 FTELFYIVLMSGSAVLNFVLSTVVFFTTLFYLLSSSDKTYKPIE-LTTMFSPISCHRFAM 726

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            + + +   F     +A   G+     + L  V        +  ++  +P          
Sbjct: 727 SLQEAVIGVFAATFKLASFFGMWTWFIHNLFQVKIVYLPSALATMLGAVPFLDAYFACIP 786

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLVGGVRTMG 324
           +   L        + + +   +  F+    +                T   + GG+  +G
Sbjct: 787 ATIELWF---TRGSMIAISFFLFHFLPCNIVVTEFYKEIKGGGHPYLTGLSIAGGIFCLG 843

Query: 325 LLGLFIGPVLMALIAVIWK 343
           + G   GP+L+  I V+  
Sbjct: 844 VEGAIFGPLLLCCIMVVIN 862


>gi|299068834|emb|CBJ40075.1| putative permease transmembrane protein [Ralstonia solanacearum
           CMR15]
          Length = 341

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/330 (11%), Positives = 97/330 (29%), Gaps = 13/330 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                ++  +I   L+        +LSA I GF  + +     ++            +++
Sbjct: 15  TASYVLVAAMISAVLWL------HLLSAAIAGFLVYALARRLEARLHARHVLSKRAKSIA 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +F++    +     L +  LV      +   + +   L  +         +  ++  
Sbjct: 69  VIGVFVIA-ALILGGIGLGIGRLVEHGHGLDGMLLRIADVLDHLRDS--LPPTFADYVPQ 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S        +       +               + +I   +  +    D         
Sbjct: 126 SVSELRARLVEMLKEHGRQVSTLGIDGLRASAMALVGLILGAMVAWSEAPDPAHSKPLSA 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L   L        + +  +V  S    +       G++         VP   +L ++T 
Sbjct: 186 ALLRRLGRLETAFEAVVFAQVKISALNTVLAAIYLMGVLPVLG---LHVPYSKSLVLLTF 242

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP    +      + + +  ++  A     +  I   +    +   ++G  I    
Sbjct: 243 VAGLIPVAGNLISNTAIVLMSVAVSLELALASLAFLVIVHKLE-YFVNARIIGSRIDARA 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                 L+      G+ G+   PVL A + 
Sbjct: 302 WELILALIVMEALFGVGGVIAAPVLYAYLK 331


>gi|194743404|ref|XP_001954190.1| GF18152 [Drosophila ananassae]
 gi|190627227|gb|EDV42751.1| GF18152 [Drosophila ananassae]
          Length = 819

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 84/270 (31%), Gaps = 5/270 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNLSMIMGVAGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 606 LVLSGGQACIEFILDMIVFFTALFYLLSSSKEKYAPLQITKYLGYSSSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFKCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 726 LAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 782

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GP+++     +++ + +A++ ++E   S+
Sbjct: 783 FGPLMLCFFIGLFEVATLAMRSHQEPRPSS 812


>gi|126442013|ref|YP_001057645.1| hypothetical protein BURPS668_0592 [Burkholderia pseudomallei 668]
 gi|126221506|gb|ABN85012.1| putative membrane protein [Burkholderia pseudomallei 668]
          Length = 361

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 81/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 193 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|254181844|ref|ZP_04888441.1| putative membrane protein [Burkholderia pseudomallei 1655]
 gi|184212382|gb|EDU09425.1| putative membrane protein [Burkholderia pseudomallei 1655]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 81/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRTKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 193 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|217420073|ref|ZP_03451579.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|254259205|ref|ZP_04950259.1| putative membrane protein [Burkholderia pseudomallei 1710a]
 gi|254296106|ref|ZP_04963563.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|157806119|gb|EDO83289.1| putative membrane protein [Burkholderia pseudomallei 406e]
 gi|217397377|gb|EEC37393.1| putative membrane protein [Burkholderia pseudomallei 576]
 gi|254217894|gb|EET07278.1| putative membrane protein [Burkholderia pseudomallei 1710a]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 80/287 (27%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 193 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +   +  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVGMGTAIASLVFLVVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|50086462|ref|YP_047972.1| hypothetical protein ACIAD3504 [Acinetobacter sp. ADP1]
 gi|49532438|emb|CAG70150.1| putative membrane protein [Acinetobacter sp. ADP1]
          Length = 338

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 92/299 (30%), Gaps = 16/299 (5%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHG 103
             P    F ++K    T +A+ + V +  L ++ +    Y         +S V       
Sbjct: 46  LSPYVERFSNRKYGRVTVVAIFSIVIITLLVVLMVSLSAYVVHDLRGGGLSSVNANLDVL 105

Query: 104 IPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY 163
           +   +         +  E   +       L       L+  G D +  F +    + L  
Sbjct: 106 LKKFQHEVGGYFPGFVPESIDEMKDTLLRLSKDHLITLQHAGTDVLHGFVTMIVGMILGA 165

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
            +S+                 S++   L   +F      + R    ++ +      I  I
Sbjct: 166 LISL-------------HPHQSEKEMPLFRRVFLQRLDMLYRAFKNIVFAQVKISLINTI 212

Query: 224 GEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
             GL +  A  L G+  P    L ++T +  ++P    +    + +   I  +   A   
Sbjct: 213 LSGLFIFIALPLMGMHLPFGKTLVILTFVFGLLPVIGNLMSNTLVVLAAISVSFTTAAIA 272

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            ++  +   +    L   ++G  I          ++      GL+GL   P+  A    
Sbjct: 273 LMYLVLIHKLE-YFLNADIIGQRINAKAWELLIAMLVFQAVFGLIGLVAAPIYYAYFKS 330


>gi|167579786|ref|ZP_02372660.1| hypothetical protein BthaT_16671 [Burkholderia thailandensis TXDOH]
 gi|167617861|ref|ZP_02386492.1| hypothetical protein BthaB_16241 [Burkholderia thailandensis Bt4]
 gi|257140293|ref|ZP_05588555.1| hypothetical protein BthaA_13965 [Burkholderia thailandensis E264]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 10/285 (3%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L           T L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRAKATGLMNKHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                D   + Q L +        +     RIV   I+ + L     A+   + L   + 
Sbjct: 193 --IGVDRHKLRQPLSTALVARISRFSDSFRRIVFAQIKISALNAFFTALYLLVALPIFHQ 250

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   +   
Sbjct: 251 --RLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE-Y 307

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 308 FLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|331677461|ref|ZP_08378136.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H591]
 gi|331073921|gb|EGI45241.1| AI-2 transport protein TqsA (Transport of quorum-sensing
           signalprotein) [Escherichia coli H591]
          Length = 283

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 74/293 (25%), Gaps = 22/293 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + AL I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+                     +  + 
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQLPGKF 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 173 QQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIY-LLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
             +  IP    +                      +    +   +    L P +
Sbjct: 231 FALNYIPNIGSVLAAIPLSLRYWCLMASTKRCWCWRDICLINLVFGNILEPRI 283


>gi|148262888|ref|YP_001229594.1| hypothetical protein Gura_0813 [Geobacter uraniireducens Rf4]
 gi|146396388|gb|ABQ25021.1| hypothetical protein Gura_0813 [Geobacter uraniireducens Rf4]
          Length = 173

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 16/113 (14%), Positives = 35/113 (30%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
              +    +    I  +   S + L  F   ++ A +I  T+WP+      +        
Sbjct: 7   SPNIARTTLAVLFIGILTAASFWILHPFLTALVWATMIVVTTWPVMLRIQKRLRGKRALA 66

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
               TV ++ +F +P        +    E+V+         +  P    +   
Sbjct: 67  VTAMTVGLLLVFSIPFTLAVINIIDWSDEIVTWSKSLATFTVSPPPAWVEQLP 119


>gi|194899400|ref|XP_001979248.1| GG14330 [Drosophila erecta]
 gi|190650951|gb|EDV48206.1| GG14330 [Drosophila erecta]
          Length = 818

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 84/269 (31%), Gaps = 5/269 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 606 LVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   A   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFRCATFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 726 LAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 782

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISS 358
            GP+++     +++ + +A++ ++E  +S
Sbjct: 783 FGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|186475107|ref|YP_001856577.1| hypothetical protein Bphy_0338 [Burkholderia phymatum STM815]
 gi|184191566|gb|ACC69531.1| conserved hypothetical protein [Burkholderia phymatum STM815]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 85/287 (29%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           K  SS     +A V +  + +  L       +   ++ V  V       + +        
Sbjct: 78  KHMSSGRARWLAVVILSVVIVGTLTGFTVAVIEHFEKDVPSVQKLLDQAMSLIDQ----- 132

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E   ++L             L       + +       IF    + +I   I  
Sbjct: 133 ARGRLPEFIAQNLPVSTEQMKEKAAVLMQTHASTLSQGGKNAARIFTHVLIGMIIGAIIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               R    +           F A   + +    +++ +      I  +  G+ L     
Sbjct: 193 VGAQRHLQRLP------LSTAFIARVSRFADAFRRIVFAQVKISAINTVFTGIFLLLLLP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L +IT I+ ++P    +    + + + +  +   A    ++  +   + 
Sbjct: 247 IFHAPLPMAKTLVMITFIVGLLPVIGNLISNTLIVAVALSVSFPAAVTALIFLILIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   +VGG I+         ++      G+ G+   P+  A I 
Sbjct: 307 -YFLNARIVGGQIEARAWELLIAMLVMEAAFGIPGVIAAPIFYAYIK 352


>gi|67643416|ref|ZP_00442162.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|121598411|ref|YP_991417.1| hypothetical protein BMASAVP1_A0065 [Burkholderia mallei SAVP1]
 gi|167001021|ref|ZP_02266822.1| putative membrane protein [Burkholderia mallei PRL-20]
 gi|254201671|ref|ZP_04908035.1| putative membrane protein [Burkholderia mallei FMH]
 gi|254207003|ref|ZP_04913354.1| putative membrane protein [Burkholderia mallei JHU]
 gi|121227221|gb|ABM49739.1| putative membrane protein [Burkholderia mallei SAVP1]
 gi|147747565|gb|EDK54641.1| putative membrane protein [Burkholderia mallei FMH]
 gi|147752545|gb|EDK59611.1| putative membrane protein [Burkholderia mallei JHU]
 gi|238524768|gb|EEP88199.1| putative membrane protein [Burkholderia mallei GB8 horse 4]
 gi|243063094|gb|EES45280.1| putative membrane protein [Burkholderia mallei PRL-20]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 81/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 193 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|124383779|ref|YP_001027507.1| hypothetical protein BMA10229_A1525 [Burkholderia mallei NCTC
           10229]
 gi|126450787|ref|YP_001082473.1| hypothetical protein BMA10247_2953 [Burkholderia mallei NCTC 10247]
 gi|126454479|ref|YP_001064890.1| hypothetical protein BURPS1106A_0608 [Burkholderia pseudomallei
           1106a]
 gi|167718041|ref|ZP_02401277.1| hypothetical protein BpseD_03418 [Burkholderia pseudomallei DM98]
 gi|167737057|ref|ZP_02409831.1| hypothetical protein Bpse14_03276 [Burkholderia pseudomallei 14]
 gi|167822688|ref|ZP_02454159.1| hypothetical protein Bpseu9_03361 [Burkholderia pseudomallei 9]
 gi|167844263|ref|ZP_02469771.1| hypothetical protein BpseB_03159 [Burkholderia pseudomallei B7210]
 gi|167892773|ref|ZP_02480175.1| hypothetical protein Bpse7_03341 [Burkholderia pseudomallei 7894]
 gi|226199550|ref|ZP_03795107.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237810794|ref|YP_002895245.1| hypothetical protein GBP346_A0519 [Burkholderia pseudomallei
           MSHR346]
 gi|242316251|ref|ZP_04815267.1| putative membrane protein [Burkholderia pseudomallei 1106b]
 gi|254196598|ref|ZP_04903022.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|254357482|ref|ZP_04973756.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|124291799|gb|ABN01068.1| putative membrane protein [Burkholderia mallei NCTC 10229]
 gi|126228121|gb|ABN91661.1| putative membrane protein [Burkholderia pseudomallei 1106a]
 gi|126243657|gb|ABO06750.1| putative membrane protein [Burkholderia mallei NCTC 10247]
 gi|148026546|gb|EDK84631.1| putative membrane protein [Burkholderia mallei 2002721280]
 gi|169653341|gb|EDS86034.1| putative membrane protein [Burkholderia pseudomallei S13]
 gi|225928431|gb|EEH24461.1| putative membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|237506669|gb|ACQ98987.1| putative membrane protein [Burkholderia pseudomallei MSHR346]
 gi|242139490|gb|EES25892.1| putative membrane protein [Burkholderia pseudomallei 1106b]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 81/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 193 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|195498606|ref|XP_002096595.1| GE24959 [Drosophila yakuba]
 gi|194182696|gb|EDW96307.1| GE24959 [Drosophila yakuba]
          Length = 818

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 5/269 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 606 LVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 726 LAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 782

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISS 358
            GP+++     +++ + +A++ ++E  +S
Sbjct: 783 FGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|241759043|ref|ZP_04757155.1| putative membrane protein [Neisseria flavescens SK114]
 gi|241320864|gb|EER57097.1| putative membrane protein [Neisseria flavescens SK114]
          Length = 357

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 104/331 (31%), Gaps = 9/331 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMC 72
           + + L  L  L   F P+L ++I+ +        +      +    +T L        + 
Sbjct: 19  ILMGLALLIVLHYHFLPLLLSVILTYIFITRTNGVILKLRRRVLPRNTRLHKSLNAHNIN 78

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L    L     + ++ M  L    ++   H   +   L+ I      S+     + +   
Sbjct: 79  LISTTLTLTIVFSIITMMSLGIYHLIHGGHVGFMLAKLAAILEDTKNSQDLPAAILNMLP 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS-- 190
             +          I+      +R     +   + I+  II           + +      
Sbjct: 139 NNMAEIKASAIKLIEEYRAALTRISKNSITSFVYILIGIIIGAMLSFHRLKMRKNRHKMP 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
           L +               +V  +      I     GL L     L GV  P  + + ++ 
Sbjct: 199 LFKAELMRRIVNFETSFERVFLAQVKISLIDTFLTGLYLYLVLPLFGVDLPFKMTVLIVA 258

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+  
Sbjct: 259 FIVGLIPVAGNLISNTIIIILSLGASLYVALASLVFLVVIHKLE-YFLNAKIIGSEIESS 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  +V   R  G+ G+ + PV  A + 
Sbjct: 318 AWELLVAMVVFERIFGIGGIIVAPVYYAYLK 348


>gi|195569097|ref|XP_002102548.1| GD19962 [Drosophila simulans]
 gi|194198475|gb|EDX12051.1| GD19962 [Drosophila simulans]
          Length = 818

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 5/269 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 606 LVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 726 LAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 782

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISS 358
            GP+++     +++ + +A++ ++E  +S
Sbjct: 783 FGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|153841626|ref|ZP_01993425.1| membrane protein [Vibrio parahaemolyticus AQ3810]
 gi|149745457|gb|EDM56708.1| membrane protein [Vibrio parahaemolyticus AQ3810]
          Length = 144

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 68/144 (47%)

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
           +G  + AI +GL  G   WLAG P      ++     +   G  + +   + YL + G++
Sbjct: 1   MGSFLTAIAQGLAGGIGMWLAGFPGLFWGTMMGFASFIPVVGTALIWIPAAAYLFLTGDM 60

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
             A  L  W  + +  +D  LRP L+ G   +  L  FF L+GG+   GL+GL  GP++ 
Sbjct: 61  TWAIFLTAWSVVIVGSIDNLLRPLLMQGSAGMNTLMIFFSLLGGLHLFGLIGLIYGPLIF 120

Query: 336 ALIAVIWKESIMAIKENKEKISSN 359
           A+  V++       K+   +  ++
Sbjct: 121 AVTMVLFNIYEEEFKDFLNQQDNS 144


>gi|134279431|ref|ZP_01766143.1| putative membrane protein [Burkholderia pseudomallei 305]
 gi|167814166|ref|ZP_02445846.1| hypothetical protein Bpse9_03428 [Burkholderia pseudomallei 91]
 gi|167901268|ref|ZP_02488473.1| hypothetical protein BpseN_03251 [Burkholderia pseudomallei NCTC
           13177]
 gi|167917514|ref|ZP_02504605.1| hypothetical protein BpseBC_03111 [Burkholderia pseudomallei
           BCC215]
 gi|134248631|gb|EBA48713.1| putative membrane protein [Burkholderia pseudomallei 305]
          Length = 361

 Score = 60.4 bits (145), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 81/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 78  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 138 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 193 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|17548632|ref|NP_521972.1| hypothetical protein RS00868 [Ralstonia solanacearum GMI1000]
 gi|17430880|emb|CAD17562.1| putative permease transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 341

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/330 (12%), Positives = 99/330 (30%), Gaps = 13/330 (3%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
                ++  +I   L+        +LSA I GF  + +     ++            +++
Sbjct: 15  TASYVLVAAMIAAVLWL------HLLSAAIAGFLVYALARRLEARLHARRVLSQRAKSIA 68

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ +F++  L L   G+  +  LV      +   + +   L  +         +  ++  
Sbjct: 69  VIGVFLIAALILGGIGLG-IGRLVEHGHGLDGMLLRIADVLDHLRDS--LPPTFADYVPQ 125

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S        +       +               + +I   +  +    D         
Sbjct: 126 SVSELRARLVEMLKEHGRQVSTLGIDGLRASAMALVGLILGAMVAWSEAPDPAGSKPLSA 185

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           +L   L        + +  +V  S    +       G++         VP   +L ++T 
Sbjct: 186 ALLRRLGRLETAFEAVVFAQVKISALNTVLAAIYLMGVLPALG---LHVPYSKSLVLLTF 242

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           +  +IP    +      + + +  ++  A     +  I   +    +   ++G  I    
Sbjct: 243 VAGLIPVAGNLISNTAIVLMSVAVSLELALASLAFLVIVHKLE-YFVNARIIGSRIDARA 301

Query: 310 LPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                 L+      G+ G+   PVL A + 
Sbjct: 302 WELILALIVMEALFGVGGVIAAPVLYAYLK 331


>gi|255089473|ref|XP_002506658.1| predicted protein [Micromonas sp. RCC299]
 gi|226521931|gb|ACO67916.1| predicted protein [Micromonas sp. RCC299]
          Length = 932

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 10/212 (4%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T                 +++ L  +  +  LF         + +L  L          
Sbjct: 680 VTAWTARASFGVFGVAGGIVNFILKAVVFLTVLFHILNSELDPAVRLVELIPVNDRVKDV 739

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +   + + +R  F+    +A+         +   GV       + +   A++P  A  S
Sbjct: 740 AV-HSLTRGVRGVFVSCAKLALFHAAFTWVTFRAFGVHFVYTSTLASGATAILPLLASWS 798

Query: 262 F-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                ++ LL KG       L +   + L  VD  +          +        +VGG+
Sbjct: 799 VSVPAALGLLAKGEGLKGFALVVMHWVVLIFVDIDIY---QSEIQVVHPYIVGLSVVGGM 855

Query: 321 RTM--GLLGLFIGPVLMALIAV---IWKESIM 347
                 L G  +GP+L+  +A    +++E + 
Sbjct: 856 SVWDHALEGAVLGPLLVTALATARNVYRELVR 887


>gi|218516479|ref|ZP_03513319.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 161

 Score = 60.4 bits (145), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 65/123 (52%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R  ++      RW+++ I+   +YF  GF  PVL+AL+IGF SWP+Y   +++   ++T 
Sbjct: 23  RTPLIPSISAARWLLVLIVAAGVYFFYGFLVPVLAALVIGFASWPLYRKLLARVGGNTTI 82

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A IA + ++   ++P+ F   Y   E++  ++  + AN+ G   P W++ +P      +
Sbjct: 83  AATIAIIMIVTFLVIPIGFAATYTTGEVRTWLAWAIHANRSGASTPGWIAALPFAGPYLD 142

Query: 122 LWT 124
              
Sbjct: 143 ELW 145


>gi|24644948|ref|NP_649756.2| CG2698, isoform A [Drosophila melanogaster]
 gi|23170697|gb|AAF54174.2| CG2698, isoform A [Drosophila melanogaster]
 gi|25012411|gb|AAN71313.1| RE12611p [Drosophila melanogaster]
 gi|220949462|gb|ACL87274.1| CG2698-PA [synthetic construct]
          Length = 817

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 82/267 (30%), Gaps = 2/267 (0%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 606 LVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                    L L+  +  F V  +    +               + GG+  +G  G   G
Sbjct: 726 LAQDRFYAGLILF--LLQFFVPSSFETAIYADLKGGHPYLNGLAIAGGMYWIGWQGAIFG 783

Query: 332 PVLMALIAVIWKESIMAIKENKEKISS 358
           P+++     +++ + +A++ ++E  +S
Sbjct: 784 PLMLCFFIGLFEVATLAMRSHQEPRNS 810


>gi|294952861|ref|XP_002787486.1| transmembrane protein, putative [Perkinsus marinus ATCC 50983]
 gi|239902488|gb|EER19282.1| transmembrane protein, putative [Perkinsus marinus ATCC 50983]
          Length = 333

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/202 (10%), Positives = 62/202 (30%), Gaps = 6/202 (2%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  +             +  ++  +   L             +  + +  F     
Sbjct: 58  IQFSVSVVTGIIGTLVESLFHFFFAVTALYYLLQSEQGGLHDYMATVLQVIDPSF----- 112

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            +  I+ + +++       ++I   +     + +   P       +  ++ ++P  +P S
Sbjct: 113 YLYNILRRALKAILYSAIKMSIFHAVYTWLVFSVFDCPVAYIPACVAFVIGLLPVISPCS 172

Query: 262 F-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               +  Y+ +  +   A       AI  F+V   + P +           +   +  GV
Sbjct: 173 VSFLIVPYIFLSYDRGMAQVCGAIAAILNFLVWWYVGPAIYSEIPDANPWMSAVAVGLGV 232

Query: 321 RTMGLLGLFIGPVLMALIAVIW 342
              G  G+ +GP +  +   ++
Sbjct: 233 SWFGARGVILGPAIATVPFTLY 254


>gi|327439242|dbj|BAK15607.1| predicted permease [Solibacillus silvestris StLB046]
          Length = 322

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 102/331 (30%), Gaps = 26/331 (7%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            I+L+  + L  F  P++  L   +  +P++  F  + +     + +I +V +  + +  
Sbjct: 17  IIVLLLYFILFYFIPPIIFGLFFAYLLFPVFLFFKQQFKLPFFLVVIILSVFLFSVVVSV 76

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           ++ + +  +  + +L S ++  +   +  P                           +  
Sbjct: 77  IMLIIHSFITILPQLQSTLLSLDSTYMKHP--------------------------LLPF 110

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
                 + I  +  +   F              I+  +F   + +       +     + 
Sbjct: 111 IVEKLQSFIRDLLFYTINFIKNSFQSIFEFFIFIVTFYFALMESYKNRLWFFAYIPKAYR 170

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
             W +  +   ++I    +    +     ++L   ++     + V    + A    +P  
Sbjct: 171 TTWARYFQKGMELIGRFIVVEMQLFTLTFILLCIGFYFLKFEAFVIKAFLIAFADCLPFL 230

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
               F           +        L     + ++ +     L    + L  + TF    
Sbjct: 231 GIGIFLIPVSIYYFIVDEPMIGIAILVLYFMVQMIRQLTESMLWSHTLHLRMIHTFLISA 290

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
             V   G  G+ + P+L+ +   + + +I A
Sbjct: 291 ASVLLFGFYGIILSPILLMIAIKVKQHAIFA 321


>gi|222480504|ref|YP_002566741.1| hypothetical protein Hlac_2094 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222453406|gb|ACM57671.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 348

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 55/364 (15%), Positives = 114/364 (31%), Gaps = 45/364 (12%)

Query: 1   MRETMLNPQGIMRWMIMFIIL--VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES 58
           M  ++ +  G + W+++ +++  V  + L  F   ++  + + + + PIY        E 
Sbjct: 1   MVASLRDRHGSVAWILVGVLITAVVAFVLYSFVGAIVVGIFLYYATRPIYRWIDQWT-EH 59

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
               A +  ++V    ++ L +  + G+ E+ +  +                        
Sbjct: 60  PDLSATVTLLTVGLPILLILAYATFVGIREIDQFFAIAN--------------------- 98

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             E     L     L   SE       +      A  F      + L +       F+  
Sbjct: 99  -LEQLRTVLEPYVDLVSGSEEQGLFGILRDNVSRARGFASSATVWLLRLFVSFTLAFYLL 157

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA-- 236
           RD + I+Q                    V   + + + G  I     GL+  S Y++   
Sbjct: 158 RDDYKIAQWFRRSF--EHQPAAVTFVEQVDADLTTIYTGNLITIGASGLLAVSTYYVLDI 215

Query: 237 ------GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG--------NIFNATCLF 282
                 GV     LG++T +  +IP              L+            F      
Sbjct: 216 IAPAGTGVQFPFLLGLLTGVATLIPAIGMKLIYYPYTGYLVWQVVSKGEGSLWFPVVFFL 275

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +   +   I D  +R ++     +L         V GV   G  G+F  P+++ +     
Sbjct: 276 VTVVVVDVIPDFFIRSYV--SKGELNMGLLLLTYVLGVVAFGWYGVFFAPIVLVVFIHFV 333

Query: 343 KESI 346
           ++ +
Sbjct: 334 RDIL 337


>gi|302834844|ref|XP_002948984.1| hypothetical protein VOLCADRAFT_120703 [Volvox carteri f.
           nagariensis]
 gi|300265729|gb|EFJ49919.1| hypothetical protein VOLCADRAFT_120703 [Volvox carteri f.
           nagariensis]
          Length = 252

 Score = 60.0 bits (144), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 4/216 (1%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +     +   ++ + F      + L  +  +I  F F  D  +IS+ + +L        +
Sbjct: 1   MLKGYTNTAAKYTAVFLKSVAKFSLQALVSLILGFLFVWDMPTISRGISTLRHSRLAPVF 60

Query: 201 KKI---SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            ++     +  ++          IA+    +  +  WL  +P    L +   + + IP  
Sbjct: 61  NEVAPVLTVFGQLFGKALQVQAQIAVVNTALTAAGMWLLAIPGIGLLSLFVFLCSFIPIM 120

Query: 258 A-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              IS   +    L +        + +  A+  F+    L P +    +KL  L     L
Sbjct: 121 GCIISTVPIGFVALTEYGFVKLAMVIIMVALVHFVEAYALNPAIYSAHLKLHPLMVLSVL 180

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
           +     +G+ GL +                      
Sbjct: 181 LVAEHNLGVWGLLLAVPSTVFALDYLIRYPNQSIRE 216


>gi|195344362|ref|XP_002038757.1| GM10992 [Drosophila sechellia]
 gi|194133778|gb|EDW55294.1| GM10992 [Drosophila sechellia]
          Length = 818

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 5/269 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 606 LVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 726 LAQDRFYAGLILFLLQFFVPSSFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 782

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISS 358
            GP+++     +++ + +A++ ++E  +S
Sbjct: 783 FGPLMLCFFIGLFEVATLAMRSHQEPRNS 811


>gi|221211215|ref|ZP_03584194.1| putative membrane protein [Burkholderia multivorans CGD1]
 gi|221168576|gb|EEE01044.1| putative membrane protein [Burkholderia multivorans CGD1]
          Length = 405

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 83/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +    +      W + 
Sbjct: 129 ARWVAVVLLAIAIVGALTGLSIAVVEHFEHTVPNLQALLGQLMQIVEQ-TRARTPAWIAN 187

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +   ++   +  T             A  FG +     +  +  I          
Sbjct: 188 VLPVDVEQMKAKAAVLMTAHMDQLQQSGKNVARGFGHVLFGMIIGAMIAIGVEH------ 241

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   GL L  A  +    +P
Sbjct: 242 ----GKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLP 297

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  I   +    L   
Sbjct: 298 LSKTLVLLTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAFLVIIHKLE-YFLNAK 356

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A I 
Sbjct: 357 IIGGQIESRAWELLLAMLVMEAAFGLPGIIAAPIFYAYIK 396


>gi|212274955|ref|NP_001130415.1| hypothetical protein LOC100191511 [Zea mays]
 gi|194689060|gb|ACF78614.1| unknown [Zea mays]
 gi|223942719|gb|ACN25443.1| unknown [Zea mays]
 gi|224029573|gb|ACN33862.1| unknown [Zea mays]
          Length = 654

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 85/271 (31%), Gaps = 10/271 (3%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             V +  +        L      +  ++      +      + S T +     + +    
Sbjct: 388 EWVEIYWELDSFFRELLITREDLVIKAKELALQGTEIAKRLLSSSTSVLGGSANLMLSIT 447

Query: 154 SRFGMIFLDYCLS----IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            R      +        ++F+ +  +    +G   ++Q+  L          +   ++  
Sbjct: 448 LRIVSGAAEVVNFLSQLMVFLWVLYYLITVEGGGATEQIIDLLPVS-KQVKDRCVEVMDH 506

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I S  L    IAI +G +    +    V       V+  I A++P       +  +   
Sbjct: 507 AISSVLLATAKIAIFQGGLTWLLFKFFKVHFVYTSTVLGFISALVPILPFWLSSIFATGQ 566

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLG 327
           L+    +    L L   +   ++       ++          T   ++GG+      L G
Sbjct: 567 LLMEGRY---VLALVVTVIHLMLMDYGTTTILEDIPGYNGYLTGLSIIGGMTLFPNALEG 623

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +GP++M ++  +       +  + E+ SS
Sbjct: 624 AILGPLIMTVVIALKNLYTEFVLADGEETSS 654


>gi|187934691|ref|YP_001885462.1| hypothetical protein CLL_A1264 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722844|gb|ACD24065.1| putative membrane protein [Clostridium botulinum B str. Eklund 17B]
          Length = 336

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 54/335 (16%), Positives = 117/335 (34%), Gaps = 25/335 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +++ + ++  Y +K +F P L+ + I   + P+Y   I K          ++ 
Sbjct: 23  KKIISLTILLCVTIIITYIIKYYFRPFLAMIFIFIIASPLYKFMI-KINIPDKISGALSI 81

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V V    I+ +L+L        +++                +LS++       +  +  L
Sbjct: 82  VLVNIFLILIILYLGNEIFNVFQKI----------------YLSNVNTINQIIQDISLEL 125

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   L ++ +     + I R A   G       ++     I  FF   DG  I   
Sbjct: 126 DLQLKKLDLGKSVISIINQESIRRGALTTGEG----IIAYFIGNICAFFILVDGEKIKNL 181

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L         KK      +     F+    + +   L +   +++  V ++  LG++
Sbjct: 182 ILMLFPSEMIKKIKKQKENFSQ----MFMIEISLVLISTLEIIGGFFILNVSNYFILGIL 237

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ ++P    I      I   I    +      +   + + ++ + L    +   + +
Sbjct: 238 CGILDVLPYVGTIIVFIPIIIYNIVMKDYLTAFGLMCLYLLVQVIREILEAKFLSDKLDI 297

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L     +  GV   G+LG+ +GP+   L   I 
Sbjct: 298 HPLIILISIYIGVEVFGILGILVGPMYSILAKEIV 332


>gi|188587957|ref|YP_001920609.1| hypothetical protein CLH_1215 [Clostridium botulinum E3 str. Alaska
           E43]
 gi|251779651|ref|ZP_04822571.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188498238|gb|ACD51374.1| putative membrane protein [Clostridium botulinum E3 str. Alaska
           E43]
 gi|243083966|gb|EES49856.1| putative membrane protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 323

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/335 (15%), Positives = 118/335 (35%), Gaps = 25/335 (7%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + I   +++ + ++  Y +K +F P L+ + I   + P+Y   I K          ++ 
Sbjct: 10  KKIISLTILLCVTIIITYIIKYYFRPFLAMIFIFIIASPLYKFMI-KVNIPDKISGALSI 68

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V V    I+ +L+L        +++                +LS++       +  +  L
Sbjct: 69  VLVNIFLILIILYLGNEIFNVFQKI----------------YLSNVNTINQIIQDISLEL 112

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                   L ++ +     + I R A   G       ++     I  FF   DG  I + 
Sbjct: 113 DLQLKKLDLGKSVISIINQESIRRGALTTGEG----IIAYFIGNICAFFILVDGEKIKKL 168

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           +  L         KK      +     F+    + +   + +   +++  V ++  LG++
Sbjct: 169 ILMLFPSEMIKKIKKQKENFSQ----MFMIEISLVLISTVEIIGGFFILNVSNYFILGIL 224

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I+ ++P    I      I   I    +      +   + + ++ + L    +   + +
Sbjct: 225 CGILDVLPYVGTIIVFIPIIIYNIVMKDYLTAFGLMCLYLLVQVIREILEAKFLSDKLDI 284

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             L     +  GV   G+LG+ +GP+   L   I 
Sbjct: 285 HPLIILISIYIGVEVFGILGILVGPMYSILAKEIV 319


>gi|320107388|ref|YP_004182978.1| hypothetical protein AciPR4_2182 [Terriglobus saanensis SP1PR4]
 gi|319925909|gb|ADV82984.1| protein of unknown function UPF0118 [Terriglobus saanensis SP1PR4]
          Length = 162

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 4/142 (2%)

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFT 263
           +R     +   +   T+ A+  G +      L  VP      +I A    +PG       
Sbjct: 16  ARRAGAALLGWWRATTLDALIVGAMWLVGLLLIHVPLAPMWAMIAAFCQFVPGIGTSLSV 75

Query: 264 AVSIYLLIKG----NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
                         +      +    A  + +    ++P L+    ++P+     G + G
Sbjct: 76  CGPAISAAFASSDTDFDKLWWVLGLYAFIVIVDGLVIQPMLLKRTTRVPWWAALLGPIVG 135

Query: 320 VRTMGLLGLFIGPVLMALIAVI 341
              +   G  + P ++A++   
Sbjct: 136 GILLPPWGALLAPPVLAVVYAF 157


>gi|167561510|ref|ZP_02354426.1| hypothetical protein BoklE_03034 [Burkholderia oklahomensis EO147]
 gi|167568739|ref|ZP_02361613.1| hypothetical protein BoklC_02764 [Burkholderia oklahomensis C6786]
          Length = 361

 Score = 60.0 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 82/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +    +   
Sbjct: 78  RHMSSQRARWVAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQ-ARTR 136

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
              W S L        ++                    A  FG +     +  +  I   
Sbjct: 137 TPEWISNLLPVDAEQMRAKAAGLMNKHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVD 196

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               R                      + S    +++ +      + A    + L +A  
Sbjct: 197 RHKPRQP----------LSTALVTRISRFSDSFRRIVFAQIKISALNAFFTAIYLLAALP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +   A+ + + +  ++  A    ++  +   + 
Sbjct: 247 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNALIVAVSLSVSMGTAIASLVFLIVIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 307 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 352


>gi|242092826|ref|XP_002436903.1| hypothetical protein SORBIDRAFT_10g010840 [Sorghum bicolor]
 gi|241915126|gb|EER88270.1| hypothetical protein SORBIDRAFT_10g010840 [Sorghum bicolor]
          Length = 654

 Score = 59.6 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 7/271 (2%)

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
           E V      +     +     D+        L    ++               N +  I 
Sbjct: 388 EWVEIYRELDSFFRELLITREDLVVKAKGLALQGTEIAKRLLSSSTLVLGGSANLMLSIA 447

Query: 151 RFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                     +++    ++F+ +  +    +G   ++Q+  L          +   ++  
Sbjct: 448 LRILSGAAEVVNFLSQLMVFLWVLYYLITVEGGGATEQIIDLLPVS-KQVKDRCVEVIDH 506

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I S  L    IAI +G +    +    V       V+  I A++P       +  +   
Sbjct: 507 AISSVLLATAKIAIFQGGLTWLLFKFFKVHFVYTSTVLGFISALVPILPFWLSSIFATGE 566

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLG 327
           L+    +    L L   +   ++       ++          T   ++GG+      L G
Sbjct: 567 LLMEGRY---VLGLVVTVIHLMLMDYGTTTILEDIPGYNGYLTGLSIIGGMTLFPNALEG 623

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKISS 358
             +GP++M ++  +       +  + E+ SS
Sbjct: 624 AILGPLIMTVVIALKNLYTEFVLADGEEASS 654


>gi|307626826|gb|ADN71130.1| putative inner membrane protein [Escherichia coli UM146]
          Length = 181

 Score = 59.6 bits (143), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 1/132 (0%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQS 132
             W   L     
Sbjct: 125 AGWHNLLDSGGD 136


>gi|302811195|ref|XP_002987287.1| hypothetical protein SELMODRAFT_446935 [Selaginella moellendorffii]
 gi|300144922|gb|EFJ11602.1| hypothetical protein SELMODRAFT_446935 [Selaginella moellendorffii]
          Length = 713

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 79/269 (29%), Gaps = 24/269 (8%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           I R  +   + + L+ L+ F   ++  +++        S           FL     V +
Sbjct: 436 IKRVCVWATVALVLFQLRDFVGVIMGTIVLSMIGNTFISWAEEYLPGRRRFLIATMYVVI 495

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVV--LANQHGIPVPRWLSD---------------- 112
           + +     +      + E   ++ ++      Q        LS+                
Sbjct: 496 IAVLTGLGIMYIPRLLQEGANIIGRIQLFNFLQQSENPYSLLSEKLKSALGENVTDQLER 555

Query: 113 -IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +   M    +  + ++   + + +    L       +  + +        + L     +
Sbjct: 556 FLLAVMRPDSVVRESMAGNTAQRSIIFQQLIKEYSGAMVAWLATLISATSRFALQSFVSL 615

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS---RIVPKVIRSTFLGMTIIAIGEGLV 228
           I  F F  D  S+   + SL +      +++I+    I+   +      + +  +    V
Sbjct: 616 IFSFLFVWDAPSVKAGIQSLKQTRLSVVYEEIAPVDWILTTELGGFDAHLKLHPLLALGV 675

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGG 257
           L  A    GV     +  +   +  I   
Sbjct: 676 LVFAEHALGV--WGLIAAVPMAVFFIEYV 702


>gi|307187157|gb|EFN72400.1| Transmembrane protein C9orf5 [Camponotus floridanus]
          Length = 807

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 71/269 (26%), Gaps = 5/269 (1%)

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
                     +          ++ I      +      +       +     +       
Sbjct: 535 AANAWENFKESFGKMPLHLFNMTSIQNFAKENIGILMSVLDSIWSIVKGNMSVILTIFTE 594

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           +       G    ++ LS +     LF+         + +  L     P    + +  + 
Sbjct: 595 LFYIVLMSGSAVFNFVLSTVVFFTTLFYLLSSSGKTYKPI-ELTTMFSPISCHRFAIALQ 653

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
           + +   F     +A   G+     + L  V        +  ++  +P          +  
Sbjct: 654 EAVIGVFAATFKLASFFGMWTWFIHNLFQVKIVYLPSALATMLGAVPFLDAYFACIPATI 713

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLVGGVRTMGLLG 327
            L        + + +   +  F+    +                T   + GG+  +G+ G
Sbjct: 714 ELWF---TRGSMIAILFFLFHFLPCNIVVTEFYKEIKGGGHPYLTGLSIAGGIFCLGVEG 770

Query: 328 LFIGPVLMALIAVIWKESIMAIKENKEKI 356
              GP+L+  I V+   S   +   +E I
Sbjct: 771 AIFGPLLLCCIMVVINLSRRYLHSPEEVI 799


>gi|215414073|ref|ZP_03422730.1| transmembrane protein [Mycobacterium tuberculosis 94_M4241A]
          Length = 159

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 43/127 (33%), Gaps = 1/127 (0%)

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLI 271
                  ++A+ +   +G+   + GVP  + L  +    A IP    +       +  L+
Sbjct: 6   GYARATFLVALTDAAGVGAGLAVMGVPLALPLASLVFFGAFIPLIGAVVAGFLAVVVALL 65

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
              I  A            +    L+P ++G  + +  L     +  G    G++G  + 
Sbjct: 66  AKGIGYALITVGLLIAVNQLEAHLLQPLVMGRAVSIHPLAVVLAIAAGGVLAGVVGALLA 125

Query: 332 PVLMALI 338
              +A  
Sbjct: 126 VPTVAFF 132


>gi|188533842|ref|YP_001907639.1| hypothetical protein ETA_17010 [Erwinia tasmaniensis Et1/99]
 gi|188028884|emb|CAO96747.1| Putative membrane protein [Erwinia tasmaniensis Et1/99]
          Length = 339

 Score = 59.6 bits (143), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 94/334 (28%), Gaps = 23/334 (6%)

Query: 18  FIILVSLYFLKGF-FAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++  +L+ +      P   A  I +       P+    + K   +     +  +V+++ 
Sbjct: 18  LLVFCALFAIFPLRLLPCFLAGFIVYETILALTPLVERLV-KGPIARWISIMFLSVALIL 76

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             +  +  L  + + + +        A           +        +      +   Q+
Sbjct: 77  ALVTGITKLISFLLHDFQN-----PAAFHATASKLLEDAQHTLSPVITRYLPSDIDELQN 131

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             +            F    A     + +   L  I  +        D       LD L 
Sbjct: 132 QVMGWLREHLVVVQTFGRNAAHTSATMLIGMLLGAIISLRISTGKRTDAPLKEALLDRL- 190

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAI 250
                     ++     V+ +      +  +  G  L     L G+  P    + V+T I
Sbjct: 191 --------TNLAAAFHNVVFAQIKVSLVNTVLTGAFLFGILPLFGLHFPFAKTVVVVTFI 242

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P    +    V + + +  ++  A    ++  +   +    +   + G  I     
Sbjct: 243 AGLLPIIGNLISNTVIVLIGLSISLEAALIALIYLVLIHKLE-YFINARIFGSRISAKTW 301

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                ++      GL G+   PV  A +    + 
Sbjct: 302 EILLAMLVFESAFGLAGVIAAPVYYAYLKAELRA 335


>gi|330508909|ref|YP_004385337.1| hypothetical protein MCON_3237 [Methanosaeta concilii GP-6]
 gi|328929717|gb|AEB69519.1| protein of unknown function (DUF20) [Methanosaeta concilii GP-6]
          Length = 356

 Score = 59.6 bits (143), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 92/301 (30%), Gaps = 17/301 (5%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  + + +IL+S YFL      ++  ++  +   P+         +     ++ A + ++
Sbjct: 15  LFAVTLLLILLSSYFLWPLQDGIVLGIVFTYLGRPV----RDLFGKRRQIGSLAAIICII 70

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
               +      +    +++ L S        G      +               +L    
Sbjct: 71  APLSIIFAAGVFEAASQLRWLQSHRAQIVATGQEFISSIYIPQFIFDELSRGMDNLMGIG 130

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
              + S                   G       L+++      ++   DG  +       
Sbjct: 131 LSMLTSLP-------------VFDLGTTLTLGLLNLLIAFCVCYYLLVDGDRLLGATIDF 177

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                  +  +    +  ++   + G    A+   +     ++L  +P  +A+  I  + 
Sbjct: 178 LRQKKGDFELRCLGRIDGILSGIYTGSISTAMVYAIASVPIFYLFDIPRPLAMASIILLA 237

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP 311
            ++P    + F   ++   I+     A   F   ++ +  V+  +RP++V     +  + 
Sbjct: 238 GVVPFLTWLVFLLTAVSRYIEMGPMEAAVFFFAASVLVAAVELVVRPYIVYARSSIHPML 297

Query: 312 T 312
            
Sbjct: 298 V 298


>gi|296161552|ref|ZP_06844357.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
 gi|295888196|gb|EFG68009.1| conserved hypothetical protein [Burkholderia sp. Ch1-1]
          Length = 361

 Score = 59.2 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 16/299 (5%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
               I                 +A V +  + +  L  L    +   +  V  V      
Sbjct: 68  LVHTIAPRIERHMSSRR--ARWLAVVILATVIVGALTGLTLGIIEHFENDVPSVQKLLDQ 125

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            + +              +    +L             L     + + +        F  
Sbjct: 126 AMQLIDQ-----ARGRIPQFVANYLPVDTEQMKAKAAELMQTHANMLQQSGKTAARAFTH 180

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             + +I   I      +    +           F     + +    +++ +      I A
Sbjct: 181 ILIGMIIGAIIAVGAQKHMQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISAINA 234

Query: 223 IGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +  G+ L     +    +P    L ++T I+ ++P    +    + + + +  +   A  
Sbjct: 235 VFTGIFLLVILPIFHDTLPLSKTLVLVTFIVGLLPVVGNLISNTIIVAVALSVSFPAAVM 294

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++  +   +    L   +VGG I+         ++      G+ G+   P+  A I 
Sbjct: 295 SLVFLILIHKLE-YFLNARIVGGQIEARAWELLIAMLIMEAAFGIPGVVAAPIFYAYIK 352


>gi|91781736|ref|YP_556942.1| hypothetical protein Bxe_A4109 [Burkholderia xenovorans LB400]
 gi|91685690|gb|ABE28890.1| Putative membrane protein [Burkholderia xenovorans LB400]
          Length = 361

 Score = 59.2 bits (142), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/299 (11%), Positives = 82/299 (27%), Gaps = 16/299 (5%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
               I                 +A V +  + +  L  L    +   +  V  V      
Sbjct: 68  LVHTIAPRIERHMSSRR--ARWLAVVILATVIVGALTGLTLGIIEHFENDVPSVQKLLDQ 125

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            + +              +    +L             L     + + +        F  
Sbjct: 126 AMQLIDQ-----ARGRIPQFVANYLPVDTEQMKTRAAELMQTHANMLQQSGKTAARAFTH 180

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             + +I   I      +    +           F     + +    +++ +      I A
Sbjct: 181 ILIGMIIGAIIAVGAQKHMQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISAINA 234

Query: 223 IGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +  G+ L     +    +P    L ++T I+ ++P    +    + + + +  +   A  
Sbjct: 235 VFTGIFLLVILPIFHDTLPLSKTLVLVTFIVGLLPVIGNLISNTIIVAVALSVSFPAAVM 294

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++  +   +    L   +VGG I+         ++      G+ G+   P+  A I 
Sbjct: 295 SLVFLILIHKLE-YFLNARIVGGQIEARAWELLIAMLIMEAAFGIPGVVAAPIFYAYIK 352


>gi|218259435|ref|ZP_03475167.1| hypothetical protein PRABACTJOHN_00825 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225089|gb|EEC97739.1| hypothetical protein PRABACTJOHN_00825 [Parabacteroides johnsonii
           DSM 18315]
          Length = 122

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCL---FLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           +     I    +S+    +             L   +   I D  L P ++G  + L   
Sbjct: 1   MQTIGIIPMILLSLLKAAETGENFWLIFGSGILVLCVVQCIQDLYLTPRIMGKAMGLNPA 60

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                L      +G +GL I   L  L    +K  I+  ++ 
Sbjct: 61  IILLSLSIWGTLLGFIGLIIALPLTTLFLSYYKRFILMEEDQ 102


>gi|187922615|ref|YP_001894257.1| hypothetical protein Bphyt_0608 [Burkholderia phytofirmans PsJN]
 gi|187713809|gb|ACD15033.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 361

 Score = 59.2 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 82/299 (27%), Gaps = 16/299 (5%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
               I                 +A V +  + +  L  L    +   +  V  V      
Sbjct: 68  LVHTIAPRIERHMSSKR--ARWLAVVILATVIVGALTGLTLGIIEHFENDVPSVQKLLDQ 125

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            + +              +    +L             L     + + +        F  
Sbjct: 126 AMQLIDQ-----ARGRIPQFVANYLPVDTEQMKTKAAELMQTHANMLQQSGKTAARAFTH 180

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             + +I   I      +    +           F     + +    +++ +      I A
Sbjct: 181 ILIGMIIGAIIAVGAQKHMQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISAINA 234

Query: 223 IGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +  G+ L     +    +P    L ++T I+ ++P    +    + + + +  +   A  
Sbjct: 235 VFTGIFLLVILPIFHDTLPLSKTLVLVTFIVGLLPVIGNLISNTIIVAVALSVSFPAAVM 294

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++  +   +    L   +VGG I+         ++      GL G+   P+  A I 
Sbjct: 295 SLVFLILIHKLE-YFLNARIVGGQIEARAWELLIAMLIMEAAFGLPGVIAAPIFYAYIK 352


>gi|195452970|ref|XP_002073580.1| GK13068 [Drosophila willistoni]
 gi|194169665|gb|EDW84566.1| GK13068 [Drosophila willistoni]
          Length = 820

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 83/270 (30%), Gaps = 5/270 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNLSMIMGVTGDILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       +     KI+  +   I
Sbjct: 606 LLLSGGQACVEFILDMIVFFTALFYLLSSSQDKYAPLQITKYLGYSTSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +I  GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFKCSIFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 726 LAQDRFYAGLTLFLMQFFVPSAFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 782

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
            GP+++     +++ + +A++ N+E    +
Sbjct: 783 FGPLMLCFFIGLFEVATLAMRNNQENPRRS 812


>gi|225076176|ref|ZP_03719375.1| hypothetical protein NEIFLAOT_01211 [Neisseria flavescens
           NRL30031/H210]
 gi|224952519|gb|EEG33728.1| hypothetical protein NEIFLAOT_01211 [Neisseria flavescens
           NRL30031/H210]
          Length = 337

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/329 (14%), Positives = 105/329 (31%), Gaps = 9/329 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + L  L  L   F P+L ++I+ +        +      +    +T L        + L 
Sbjct: 1   MGLALLIVLHYHFLPLLLSVILTYIFITRTNGVILKLRRRVLPRNTRLHKSLNAHNINLI 60

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              L     + ++ M  L    ++   H   +   L+ I      S+     + +     
Sbjct: 61  STTLTLAIVFSIITMMSLGIYHLIHGGHVGFMLAKLAAILEDTKNSQDLPAAILNMLPNN 120

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +          I+      +R     +   + I+  II           + +    +   
Sbjct: 121 MAEIKASAIKLIEEYRAALTRISKNSITSFVYILIGIIIGAMLSFHRLKMRKHRGKMPPF 180

Query: 195 LFPAYWKKISRI--VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAI 250
                 + ++      +V  +      I     GL L     L GV  P  + + +I  I
Sbjct: 181 KAELVRRIVNFETSFERVFLAQVKISLIDTFLTGLYLYLVLPLFGVDLPFKMTVLIIAFI 240

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+    
Sbjct: 241 VGLIPVAGNLISNTIIIILSLGASLYVALASLVFLVVIHKLE-YFLNAKIIGSEIESSAW 299

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                +V   R  G+ G+ + PV  A + 
Sbjct: 300 ELLVAMVVFERIFGIGGIIVAPVYYAYLK 328


>gi|292488269|ref|YP_003531151.1| hypothetical protein EAMY_1793 [Erwinia amylovora CFBP1430]
 gi|292899464|ref|YP_003538833.1| membrane protein [Erwinia amylovora ATCC 49946]
 gi|291199312|emb|CBJ46429.1| putative membrane protein [Erwinia amylovora ATCC 49946]
 gi|291553698|emb|CBA20743.1| UPF0118 membrane protein MTH_1211 [Erwinia amylovora CFBP1430]
 gi|312172408|emb|CBX80665.1| UPF0118 membrane protein MTH_1211 [Erwinia amylovora ATCC BAA-2158]
          Length = 339

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/334 (11%), Positives = 90/334 (26%), Gaps = 23/334 (6%)

Query: 18  FIILVSLYFLKGF-FAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++  +LY +      P   A  I +       P+    +         +  ++ + ++ 
Sbjct: 18  LLVCAALYAIFPLRLLPCFLAGFIVYETILALTPLVERLVKGPVARWISIMFLSVMLILA 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L       + +           +   A           +        +      +   Q+
Sbjct: 78  LVTGITKLIGFMLNDL------QNPAAFHATASKLLEDAQHTLSPVITRYLPSDIDELQT 131

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I            F    A  F  + +   L  I  +        D       LD L 
Sbjct: 132 RIIGWLREHLVVVQTFGRNAAHTFATMLIGMLLGAIISLRISVGKRPDAPLKEAMLDRL- 190

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAI 250
                     ++     V+ +      +  +  G  L     L G+  P    + V+T I
Sbjct: 191 --------SILAAAFHNVVFAQIKVSLVNTVLTGAFLFGVLPLFGLHFPFAKTVVVLTFI 242

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P    +    V + + +  ++  A    ++  +   +    +   + G  I     
Sbjct: 243 AGLLPIIGNLISNTVIVLIGLSISLEAALIALVYLVLIHKLE-YFINARIFGSRISAKTW 301

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                ++      GL G+   PV  A +    + 
Sbjct: 302 EILLAMLVFESAFGLAGVIAAPVYYAYLKAELRA 335


>gi|226322310|ref|ZP_03797828.1| hypothetical protein COPCOM_00071 [Coprococcus comes ATCC 27758]
 gi|225209284|gb|EEG91638.1| hypothetical protein COPCOM_00071 [Coprococcus comes ATCC 27758]
          Length = 261

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 55/237 (23%), Gaps = 13/237 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES------------STFLAVIA 66
           +++  L  +     P      I F      S    K                     ++ 
Sbjct: 25  VVIEVLKSIWKIVFPFALGGAIAFVINVPMSFLEKKMLGKIKENNKIGKKAARPISLLLT 84

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTK 125
            +    + ++ +  +       M  L++ +           R    D    M   +    
Sbjct: 85  IILAAGVMVLVMFGVIPQLTQTMGNLMTSISDFIPQMQNWIREFSHDNQDIMKLVDQLQF 144

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                    I        N ++               + +S  F    LF   +    + 
Sbjct: 145 QPDQAIKWGISLLGNGAGNMMNTTMSAVGSIASGLATFFISFSFACYILFQKEKLHLQVR 204

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           + + +            I  +  +   +   G  + A+  G++      +     H 
Sbjct: 205 KVIFAFIPKQKADAILNICSLTYRTFANFLAGQCLEAVILGMMFVITLSILKCHMHF 261


>gi|257389051|ref|YP_003178824.1| hypothetical protein Hmuk_3012 [Halomicrobium mukohataei DSM 12286]
 gi|257171358|gb|ACV49117.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286]
          Length = 387

 Score = 58.8 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/359 (13%), Positives = 106/359 (29%), Gaps = 33/359 (9%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
               + +   +   ++      +  +    +  + I + + P+Y     +  +   F A 
Sbjct: 7   FDRSRVLWWTLTAALVGTLGLVVYSYIGTFVFGIFIYYAARPVYRRL-RRVVDRPGFAAA 65

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A  +    F+    +L + G+ E++             +P+P                 
Sbjct: 66  GALFAFEIPFLAVTGYLLFLGIKELERSAGAGAEVVAWFLPIP----------------A 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             L    +      +      I+ I             + L +   I   F+  RDG  I
Sbjct: 110 AELERAVADPATYVSSFDAASINEIVSTGGDVLGPVSTFFLHLALGIAIAFYLLRDGEHI 169

Query: 185 SQQLD------SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
           +  L       S          +    +    +R+  +   +       +   A     +
Sbjct: 170 ATWLREEVGEESALWLYATLVDRDFQVVYFGNVRTVVVVALLALGVYNGLNVIAPPGLKI 229

Query: 239 PSHVALGVITAIMAMIPG-GAPISFTAVSIYL---LIKGNIFNATCLFLWGAIELFIVD- 293
           P    L ++T    ++P     I +  V++YL    I+ +            + L ++D 
Sbjct: 230 PIPNVLALLTGAATLVPIVVGKIVYVPVTVYLGLAAIESDPATIWFPVAVAVVALLVLDL 289

Query: 294 ---KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAI 349
                +RP   G           F  + G       G+F GP+L+     + +  +  +
Sbjct: 290 FPIMIVRPVFAGQST--HRGAMMFSYIFGGLLFSWYGVFFGPLLLIAAIHLVRVGLSEL 346


>gi|27357090|gb|AAN86544.1| putative permease protein [Eubacterium acidaminophilum]
          Length = 248

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 61/212 (28%), Gaps = 1/212 (0%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
           GI         +   +     F P + A II  +  P+      +   S+   ++IA+V 
Sbjct: 37  GIFAIFYTIAFVAFFWTAAYTF-PFIIAFIIALSIQPLVKLLKERIGISNGITSLIASVL 95

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V  LF   +  L Y  + E K+++S +   + + +            ++   +    ++ 
Sbjct: 96  VYILFFTLIFLLSYKMVSEAKQMLSTLTTIDINYVTQLVKEWISRFDIYLKYIDPDFINK 155

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
             S              +               +   I   II+ +FF RD   I     
Sbjct: 156 NSSQDHGYSKERPLECSEGSLNKFLSAAGSIPLWIAVIFITIISTYFFTRDMDKIKNSTF 215

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
            +           +      +         I 
Sbjct: 216 GIFSEKGQQRVLNVLEEGVSLFVKIVKSYAIY 247


>gi|221378295|ref|NP_001138024.1| CG2698, isoform B [Drosophila melanogaster]
 gi|220903028|gb|ACL83483.1| CG2698, isoform B [Drosophila melanogaster]
          Length = 810

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 80/264 (30%), Gaps = 2/264 (0%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 546 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNMSMIMGVTGEILS 605

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 606 LVLSGGQACIEFILDMIVFFTALFYLLSSSQEKYAPLQITKYLGYSSSGIKIADALENSI 665

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +   GL     + + G         + A++A  P          +   L 
Sbjct: 666 TVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYWCAVPAFLELW 725

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
                    L L+  +  F V  +    +               + GG+  +G  G   G
Sbjct: 726 LAQDRFYAGLILF--LLQFFVPSSFETAIYADLKGGHPYLNGLAIAGGMYWIGWQGAIFG 783

Query: 332 PVLMALIAVIWKESIMAIKENKEK 355
           P+++     +++ + +A++ ++E 
Sbjct: 784 PLMLCFFIGLFEVATLAMRSHQEP 807


>gi|326939660|gb|AEA15556.1| hypothetical protein CT43_CH1872 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 229

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 15/103 (14%), Positives = 39/103 (37%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           ++    +G  R++++ I+ + LY LK     +L   I+ F           K + +   +
Sbjct: 5   KSFFRSRGFQRFLVLIIVALVLYALKSMINLILITFILTFLMDRFQRFISRKLKVNRKIV 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP 105
                + ++      L        +++ +L+ +  L  Q+   
Sbjct: 65  IACLYIILVSFIGTTLYKYLPVLTIQISQLIYQFKLFFQNPPD 107


>gi|331663166|ref|ZP_08364076.1| putative permease [Escherichia coli TA143]
 gi|331058965|gb|EGI30942.1| putative permease [Escherichia coli TA143]
          Length = 181

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 45/132 (34%), Gaps = 1/132 (0%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQS 132
             W   L     
Sbjct: 125 AGWHNLLDMGGD 136


>gi|220924709|ref|YP_002500011.1| putative permease [Methylobacterium nodulans ORS 2060]
 gi|219949316|gb|ACL59708.1| putative permease [Methylobacterium nodulans ORS 2060]
          Length = 351

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 74/280 (26%), Gaps = 13/280 (4%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI    +  + +  +       +  +      + L  +    V             S 
Sbjct: 74  AKVIVVTLLAAIVVTAVGAGTLSLIALLSGGSDNLSLLLRKMAEVIDTARSSLPSWALSF 133

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L  +      +                        G         I+F ++         
Sbjct: 134 LPEESTELKTASVTWLREH---------AGQLRSIGQDVWHALFHIVFGLVIGGMVAVSR 184

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            + + +   L   L     + ++     V+ +      +      L L  A    G+P  
Sbjct: 185 ETGTGERGPLVHALT-NRLRLLAAAFRNVVFAQVRISALNTALTALYLLVAVPWLGIPLP 243

Query: 242 VA--LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               + V+T +  ++P    +    V + + +  +   A     +  +   +    L   
Sbjct: 244 FTKTMVVVTFVTGLLPVIGNLISNTVIVLVSLSVSPALAVASLAFLVVIHKLE-YFLNAR 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I          ++      G+ GL   P+  A + 
Sbjct: 303 VMGGQIHARAWEILVAMLIMEALFGIPGLVAAPIFYAYLK 342


>gi|295675427|ref|YP_003603951.1| hypothetical protein BC1002_0333 [Burkholderia sp. CCGE1002]
 gi|295435270|gb|ADG14440.1| conserved hypothetical protein [Burkholderia sp. CCGE1002]
          Length = 361

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 81/292 (27%), Gaps = 16/292 (5%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                          +A V +  + +  L  L    +   +  V  V       + +   
Sbjct: 75  RIERHMSSRR--ARWLAVVLLSTVIVGALTGLTLGIISHFENDVPSVQALLDQAMQLIDQ 132

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
                      +    +L           T L     + + +  +     F    L +I 
Sbjct: 133 -----ARGRIPQFVANYLPVDTEQMKTKATELMHTHANMLQQSGTTVARAFTHVLLGMII 187

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
             I      +    +           F     + +    +++ +      + A+   + L
Sbjct: 188 GAIIAVGAQKHIQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISALNAVFTAIFL 241

Query: 230 GSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
                     +P    L ++T I+ ++P    +    + + + +  +   A    ++  +
Sbjct: 242 LVVLPTFHDRLPLSKTLVLVTFIVGLLPVIGNLISNTIIVAVALSVSFPAAIMSLVFLIL 301

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              +    L   +VGG I+         ++      G+ G+   P+  A I 
Sbjct: 302 IHKLE-YFLNARIVGGQIEARAWELLIAMLVMEAAFGIAGVIAAPIFYAYIK 352


>gi|167957504|ref|ZP_02544578.1| hypothetical protein cdiviTM7_02485 [candidate division TM7
           single-cell isolate TM7c]
          Length = 209

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/193 (5%), Positives = 53/193 (27%), Gaps = 1/193 (0%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF-LAVIATVSV 70
           +  +   +  ++++  +     V+ +  +        +  +      S       A + +
Sbjct: 17  LVVIGFALSALAIFMARSALILVVVSFFLALALNVPVNFLVKFMPGRSRLGGTAAAYIII 76

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L    L  +    + +       V             ++++       E   + ++  
Sbjct: 77  VGLLTGFLFLVLPPLVEQSVHFAESVPDLIDKNKDQINSINNLVNQYHLQEQVDQAINSI 136

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           ++      T +    +  I         + L   ++ + ++    +  R     + +   
Sbjct: 137 KNNASQLATNIGVGVVTGIGSVLGVVISLLLVLVMTFLMLLEGPSWLRRYWNMYTNEDRK 196

Query: 191 LGEHLFPAYWKKI 203
               +      ++
Sbjct: 197 AHHQMLAKKMYRV 209


>gi|226326457|ref|ZP_03801975.1| hypothetical protein PROPEN_00305 [Proteus penneri ATCC 35198]
 gi|225205056|gb|EEG87410.1| hypothetical protein PROPEN_00305 [Proteus penneri ATCC 35198]
          Length = 203

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/194 (12%), Positives = 61/194 (31%), Gaps = 9/194 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +PQ I   +I+      LYF  G  AP+L A+++ +           K   +  +
Sbjct: 10  KRRFADPQVIALVVILIAGFSILYFFSGILAPLLVAIVLAYLLEWPTHLLE-KLGCARIW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              I     + +  + +L L      +   L+S +             L D    +    
Sbjct: 69  AVSIILTLFIGISAIVILILAPTVWQQGMTLISDIPNMINKFNAFAHELPDRFPAL---- 124

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 +    +   +     +   + + + +    +  +   + +I + +  FF  +D 
Sbjct: 125 ----MDAGIVDMMAENLRSKFSTVAESVLKVSLASLIGIITLSIYLILVPLMTFFLLKDK 180

Query: 182 FSISQQLDSLGEHL 195
             +   +  +    
Sbjct: 181 QQMLNAVRRVLPKK 194


>gi|330818330|ref|YP_004362035.1| hypothetical protein bgla_1g34760 [Burkholderia gladioli BSR3]
 gi|327370723|gb|AEA62079.1| hypothetical protein bgla_1g34760 [Burkholderia gladioli BSR3]
          Length = 362

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 83/285 (29%), Gaps = 10/285 (3%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +  + +  L  L    +  ++  V  +       + +        
Sbjct: 79  RHMSSGRARWLAVVLLSVVIVGGLAGLTAAVIDHVEHTVPNLQGLMGQVMQLVDQARGRV 138

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            G          L    +   L  T L +  +D + +       IF      +I   +  
Sbjct: 139 PG-----WVANVLPVDAAQMKLKATGLMSKHMDQLQQGGKSAARIFGHVLFGMIIGAMIA 193

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               R+          L      A   +        I +     T I +    +      
Sbjct: 194 VGVDRNKARRPLSTALLARVGAFAEAFRRIVFAQIKISAINATFTAIYL----LAVLPVV 249

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              +P    L ++T I+ ++P    +    + + + +   +  A     +  +   +   
Sbjct: 250 HVKMPLAKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVGVGTAIASLTFLILIHKLE-Y 308

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L   ++GG I+         ++      G+ G+   P+  A I 
Sbjct: 309 FLNARIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYIK 353


>gi|282897109|ref|ZP_06305111.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
 gi|281197761|gb|EFA72655.1| Protein of unknown function UPF0118 [Raphidiopsis brookii D9]
          Length = 267

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 56/181 (30%), Gaps = 9/181 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           ++++ +  ++ +     +  A I+ F           K   + T+  +I  V  + L ++
Sbjct: 3   VWLLSLLFHYFQHPITILSIAAILAFLLNYPVQLLE-KARITRTYSVIIVLVITLTLLVI 61

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
               L    + +  +L+  +             L  +           K L    S+   
Sbjct: 62  LGFTLVPMLVEQTTQLLRNIPDWVTSSQENLSKLQVL--------ARQKRLHIDFSVVSS 113

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                  N +  I   A  F    L   L+I+ +++  F+    G  +   L +      
Sbjct: 114 QINASVQNILQQIASGAVGFAGTLLSALLNIVLVVVLAFYMLIYGDRLWSGLINQLPSYI 173

Query: 197 P 197
            
Sbjct: 174 G 174


>gi|152982074|ref|YP_001351765.1| hypothetical protein mma_0075 [Janthinobacterium sp. Marseille]
 gi|151282151|gb|ABR90561.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 337

 Score = 58.1 bits (139), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/341 (11%), Positives = 105/341 (30%), Gaps = 15/341 (4%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M   + N   +    ++  + + L   +G  A + S L++      +      +      
Sbjct: 1   MSTPIKNSYVVTASYVLAAVALWLVMHQGLLAALFSGLLVYSLVQLLAPKMGRELVGHKG 60

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A +A +SV  L +  L  L +  +   +    ++ +  Q    +            A+
Sbjct: 61  QVAAVALLSV--LIVAALTILIWGSITFFRSDAGRISVLLQKMADILEASRSQIPAWIAT 118

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            +     +    +     +               R         L+ I + + +      
Sbjct: 119 YIPVDAEALRTMITSWLRSHALEA----------RTMGSEAGRILAHILIGMIIGAMAGL 168

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
             + + ++         A    +      ++ +      I A   G+ L     LAG+  
Sbjct: 169 YDTTTMRVYKPLAAAMHARVVALHNAFRNIVFAQVRIAAINAALTGIYLIVILPLAGIEL 228

Query: 241 HV--ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
            +   + V+T  + ++P    +    + + + +  ++  A    ++  +   +    L  
Sbjct: 229 PLRKTMVVVTFFVGLLPVIGNLISNTILVIIGLSHSLHTALGSLVFLMVIHKLE-YFLNA 287

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            ++G  I          ++      G+ G+   PV  A + 
Sbjct: 288 KIIGQHIDARTWELLMAMLVMESIFGIPGVIAAPVFYAYVK 328


>gi|325122991|gb|ADY82514.1| hypothetical protein BDGL_001928 [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 338

 Score = 57.7 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/337 (10%), Positives = 94/337 (27%), Gaps = 9/337 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + + N Q ++   I+  I +         A   +  +I      + S      +      
Sbjct: 2   QNLNNRQSLIASYILMGIFLLSVIPLHLLASFFAGFLIYEIIISLSSVVERYIDGQR-AR 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I+ +  +    +   F+       + +L    + +    +             +    
Sbjct: 61  IFISILLSIVTISLIGFFITSLISFVVYDLKGVGLHSINSKVDQTLLHLQAEITKYLPGY 120

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               ++  +           T   +        F  + +   + I+  I           
Sbjct: 121 IPDSVTDLKDEIFAFMKDNVTTLKNTSSDILHNFVTMVMGLIIGILVAIHGFH-----RR 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      SL              +V   I+ + +   +  +   ++L    W   +P   
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFKNVVFAQIKISAINTLLFILFAFILLPL--WGVHLPFAK 233

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T +  +IP    +    ++    +  ++  A    L+  +   +    +   ++G
Sbjct: 234 TLTILTFMFGLIPILGNLLSNTLTFIAALTISLGLAGAALLYLVLVHKLE-YFINAKIIG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             I          ++      GL GL   P+  A + 
Sbjct: 293 HKINANAWEILLAMLVFESIFGLGGLIAAPIFYAYLK 329


>gi|78067579|ref|YP_370348.1| putative transporter [Burkholderia sp. 383]
 gi|77968324|gb|ABB09704.1| putative transporter [Burkholderia sp. 383]
          Length = 361

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 83/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +  + +  L  L    +   +  V  +       + +            A+ 
Sbjct: 85  ARWVAVVLLSIVIVGALTSLTIGIIEHFERTVPNLQSLLDQLMQIVEQTRARTPAWIANL 144

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L            +L  + +           A  FG +     +  +  I          
Sbjct: 145 LPVDVEQMKTKAAVLMHSHMDQ-LQQSGKSVARGFGHVLFGMIIGAMIAIGVEH------ 197

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A+  G+ L  A  +    +P
Sbjct: 198 ----GKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAVFTGIYLLVALPIFHQRLP 253

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  I   +    L   
Sbjct: 254 LSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVIIHKLE-YFLNAK 312

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 313 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLK 352


>gi|323524696|ref|YP_004226849.1| hypothetical protein BC1001_0324 [Burkholderia sp. CCGE1001]
 gi|323381698|gb|ADX53789.1| protein of unknown function UPF0118 [Burkholderia sp. CCGE1001]
          Length = 361

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 83/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +  + +  L  L    +   +  V  V       + +        
Sbjct: 78  RHMSSGRARWLAVVILSTVIVGALTGLTLGVIEHFENDVPSVQKLLDQAMQLIDQ----- 132

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 +    +L             L     + + +        F    + +I   I  
Sbjct: 133 ARGRIPQFIASYLPVDTEQMKTRAAELMQTHANMLQQSGKTAARAFTHILIGMIIGAIIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               +    +           F     + +    +++ +      I A+  G+ L     
Sbjct: 193 VSAQKHMQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISAINAVFTGIFLLIVLP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L +IT I+ ++P    +    + + + +  +   A     +  +   + 
Sbjct: 247 IFHDQLPLSKTLVLITFIVGLLPVIGNLISNTIIVAVALSVSFPAAVMSLAFLILIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   +VGG I+         ++      GL G+   P+  A I 
Sbjct: 307 -YFLNARIVGGQIEARAWELLVAMLVMEAAFGLPGVIAAPIFYAYIK 352


>gi|167589269|ref|ZP_02381657.1| hypothetical protein BuboB_28291 [Burkholderia ubonensis Bu]
          Length = 119

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/119 (43%), Positives = 75/119 (63%)

Query: 229 LGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
           LG AY LAGVP    LG++TAI AM+P  API F   +++L ++G    A  +   G + 
Sbjct: 1   LGIAYVLAGVPHAALLGLVTAIAAMLPFCAPIVFCGAALWLFVQGATAWAVAVAATGFVV 60

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
           +F+ +  +RP L+G   +LPFL   FG++GG  T GLLGLFIGP LM ++ ++W E + 
Sbjct: 61  VFVAEHFVRPVLIGSSARLPFLLVLFGILGGAETFGLLGLFIGPALMTVLTMLWAEWVA 119


>gi|239628242|ref|ZP_04671273.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518388|gb|EEQ58254.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 120

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 44/107 (41%)

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           + GV   V +  + ++  ++P             L      +  +   L   + + ++  
Sbjct: 1   MIGVERSVLIAFLISVFDILPVLGTGGIMIPWTILTALKGNYPLSAGLLAVYLIITVIRN 60

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            + P +VG  I L  + T   +  G +  G+LGLF  P+ ++L+  +
Sbjct: 61  IIEPKIVGSQIGLHPVVTLSSMFVGAQLFGVLGLFGFPIGLSLLRHL 107


>gi|156397366|ref|XP_001637862.1| predicted protein [Nematostella vectensis]
 gi|156224978|gb|EDO45799.1| predicted protein [Nematostella vectensis]
          Length = 811

 Score = 57.7 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 7/221 (3%)

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    L     +   + + +       +         +       ++FM    +     G
Sbjct: 586 ILMSLLESVWMIVKGNVSMVINLVTMVLSLVFFSGTYVLNAGLSMVVFMTALFYLLSTSG 645

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
                        +  +        + K IR  F     +A   GL     + + GV   
Sbjct: 646 DQYRP--VEWFGQMSASGTAGFGESLYKAIRDVFGAALKMATFYGLYTVLTHTIFGVNIV 703

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPF 299
                I A+ +++P          ++  L     +   A  L +   +  ++VD  +   
Sbjct: 704 FIPSAIAAVTSVVPFVGTYWAAVPAVLELWLVHEDSVRAIILAVCHVLPTYVVDTAIYSE 763

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + GG        T   + GG+  +GL G  IGP+++  + V
Sbjct: 764 ISGGG---HPYLTGLAVAGGIYCVGLEGAIIGPIVLCCLIV 801


>gi|253731993|ref|ZP_04866158.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724403|gb|EES93132.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 213

 Score = 57.3 bits (137), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/159 (11%), Positives = 45/159 (28%), Gaps = 1/159 (0%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +   K   AP++ +LI+ +   PI +     +         I  ++V+ +  + +  L 
Sbjct: 56  FIIVFKTIAAPIIVSLILFYLFNPIVNMMERYR-IPRVAGISIIYLAVVGVITLIVNLLI 114

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                ++  LV       +  I     +++              L+          +   
Sbjct: 115 PIIGSQVDSLVKNSPQYLEKLINSIDKIANNTFFSSYYSQINDWLNSLPKKIPSMLSEFT 174

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                 I  FA     I +    +   +   L   +   
Sbjct: 175 DGFGSKIATFAETIANIGVVIVTTPFVLFFMLKDGHHFK 213


>gi|89514122|gb|ABD74918.1| hypothetical protein [Sinorhizobium fredii]
          Length = 122

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 64/120 (53%)

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P  +  G +T +++ +P   P+ + +V++ L I+G ++ +  +  WG + +  +D  + P
Sbjct: 1   PQALLFGFLTFVLSFVPIDPPLVWGSVALGLFIRGAVWWSFFVAAWGLLLVSSIDNVIGP 60

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           +++G     P L  FFG +GGV   G +G+F+GP L+A+   ++     A  E +   + 
Sbjct: 61  YVLGKTDNRPVLLGFFGFLGGVVAFGFIGIFLGPTLLAVAYSLFLGWTTAEVEERRHPTE 120


>gi|170691479|ref|ZP_02882644.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
 gi|170143684|gb|EDT11847.1| conserved hypothetical protein [Burkholderia graminis C4D1M]
          Length = 361

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 82/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +  + +  L  L    +   +  V  V       + +        
Sbjct: 78  RHMSSGRARWLAVVILSTVIVGALTGLTLGVIEHFENDVPSVQKLLDQAMQLIDQ----- 132

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 +     L             L     + + +        F    + +I   I  
Sbjct: 133 ARGRIPQFIASSLPVDTEQMKAKAGELMQTHANMLQQSGKTAARAFTHILIGMIIGAIIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               +    +           F     + +    +++ +      I A+  G+ L     
Sbjct: 193 VSAQKHMQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISAINAVFTGIFLLVVLP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L +IT I+ ++P    +    + + + +  +   A     +  +   + 
Sbjct: 247 MFHDQLPLSKTLVLITFIVGLLPVIGNLISNTIIVAVALSVSFPAAVMSLAFLILIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   +VGG I+         ++      GL G+   P+  A I 
Sbjct: 307 -YFLNARIVGGQIEARAWELLVAMLVMEAAFGLPGVVAAPIFYAYIK 352


>gi|170700365|ref|ZP_02891375.1| putative transporter [Burkholderia ambifaria IOP40-10]
 gi|170134709|gb|EDT03027.1| putative transporter [Burkholderia ambifaria IOP40-10]
          Length = 360

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +    +      W + 
Sbjct: 84  ARWVAVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQ-TRARTPDWIAN 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +   ++   L                A  FG +     +  +  I          
Sbjct: 143 LLPVDVEQMKTKAALLMHSHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEH------ 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   G+ L  A  +    +P
Sbjct: 197 ----GKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLP 252

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  +   +    L   
Sbjct: 253 LSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLE-YFLNAK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 312 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLK 351


>gi|189351521|ref|YP_001947149.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221200008|ref|ZP_03573051.1| putative membrane protein [Burkholderia multivorans CGD2M]
 gi|221206837|ref|ZP_03579849.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|189335543|dbj|BAG44613.1| putative permease [Burkholderia multivorans ATCC 17616]
 gi|221173492|gb|EEE05927.1| putative membrane protein [Burkholderia multivorans CGD2]
 gi|221180247|gb|EEE12651.1| putative membrane protein [Burkholderia multivorans CGD2M]
          Length = 361

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 83/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +    +      W + 
Sbjct: 85  ARWVAVVLLAIAIVGALTGLSIAVVEHFEHTVPNLQALLGQLMQIVEQ-TRARTPAWIAN 143

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +   ++   +  T             A  FG +     +  +  I          
Sbjct: 144 VLPVDVEQMKAKAAVLMTAHMDQLQQSGKNVARGFGHVLFGMIIGAMIAIGVEH------ 197

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   GL L  A  +    +P
Sbjct: 198 ----GKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLP 253

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  I   +    L   
Sbjct: 254 LSKTLVLLTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAFLVIIHKLE-YFLNAK 312

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A I 
Sbjct: 313 IIGGQIESRAWELLLAMLIMEAAFGLPGIIAAPIFYAYIK 352


>gi|161523715|ref|YP_001578727.1| putative transporter [Burkholderia multivorans ATCC 17616]
 gi|160341144|gb|ABX14230.1| putative transporter [Burkholderia multivorans ATCC 17616]
          Length = 363

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 83/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +    +      W + 
Sbjct: 87  ARWVAVVLLAIAIVGALTGLSIAVVEHFEHTVPNLQALLGQLMQIVEQ-TRARTPAWIAN 145

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           +    +   ++   +  T             A  FG +     +  +  I          
Sbjct: 146 VLPVDVEQMKAKAAVLMTAHMDQLQQSGKNVARGFGHVLFGMIIGAMIAIGVEH------ 199

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   GL L  A  +    +P
Sbjct: 200 ----GKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLP 255

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  I   +    L   
Sbjct: 256 LSKTLVLLTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAFLVIIHKLE-YFLNAK 314

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A I 
Sbjct: 315 IIGGQIESRAWELLLAMLIMEAAFGLPGIIAAPIFYAYIK 354


>gi|153873738|ref|ZP_02002219.1| Protein of unknown function, UPF0118 [Beggiatoa sp. PS]
 gi|152069797|gb|EDN67782.1| Protein of unknown function, UPF0118 [Beggiatoa sp. PS]
          Length = 82

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 21/82 (25%)

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
            G                 +    L P L    + L  +     ++      G  G+F  
Sbjct: 1   MGYNTRFFWAVGIYLAIQALDGNVLVPLLFSEAVNLHPVAIIVAILVFGGFWGFWGVFFA 60

Query: 332 PVLMALIAVIWKESIMAIKENK 353
             L  L+  +       + E +
Sbjct: 61  IPLATLVKALLSAWPRTLHEEE 82


>gi|206559217|ref|YP_002229978.1| hypothetical protein BCAL0824 [Burkholderia cenocepacia J2315]
 gi|198035255|emb|CAR51130.1| putative membrane protein [Burkholderia cenocepacia J2315]
          Length = 360

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +            A+ 
Sbjct: 84  ARWVAVVLLSIAIVGALTGLTIGIIEHFEHTVPNLQSLLDQLMQIVEQTRARTPAWIANL 143

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L            +L  + +           A  FG +     +  +  I          
Sbjct: 144 LPVDVEQMKTKAAVLMHSHMDQ-LQQSGKSVARGFGHVLFGMIIGAMIAIGVEQ------ 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + S    +++ +      I A   G+ L  A  +    +P
Sbjct: 197 ----GKVRRPLSTALVMRVSRFSDAFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLP 252

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  +   +    L   
Sbjct: 253 LSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLE-YFLNAK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 312 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLK 351


>gi|170761211|ref|YP_001787738.1| hypothetical protein CLK_1803 [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408200|gb|ACA56611.1| putative membrane protein [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 326

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 91/295 (30%), Gaps = 19/295 (6%)

Query: 28  KGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGML 87
           K +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + +  +  +   
Sbjct: 29  KNYFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNLILFLLIFLIGNFIYN 88

Query: 88  EMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGID 147
            +  L                 ++ +            +      L              
Sbjct: 89  NLILLKGYYYNFKTEIDCFIGDINKMLNMNKHIFNKNLNNIDTTLLN------------- 135

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
               F  +      ++  +     ++++F   D ++I + ++           +     +
Sbjct: 136 --GDFFRKGASYTTEWFFAYFIASLSIYFILVDKYAILENIEKYIGSNEFEKIRDKIYKL 193

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            ++I+        + I   L       +  + + + LGV+  I+ M+P    +      I
Sbjct: 194 KEIIKIEC----FLVIFTTLQTIIGLKILNINNCLMLGVLCGILDMLPYIGTVVIFLPLI 249

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                   +      +   + L I  + L    +   ++LP L     +  G + 
Sbjct: 250 LYQFYTKNYIIFLGLICLYLLLVITRQILETKFMSSKLQLPALVIIISIYIGFKI 304


>gi|71988646|ref|NP_001022687.1| hypothetical protein M01F1.4 [Caenorhabditis elegans]
 gi|60222918|emb|CAI58660.1| C. elegans protein M01F1.4b, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 807

 Score = 57.3 bits (137), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 77/258 (29%), Gaps = 14/258 (5%)

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
              +     ++   +  +      ++      +     + ++ +  +      FGM  L+
Sbjct: 535 VTDLTALKDELTLIVKENLDTLMGIAQSIGAILAVNVSIFSSLLVSLAGIILSFGMDLLN 594

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSL--------GEHLFPAYWKKISRIVPKVIRST 214
             + +I  +  +++      +    L            +         I+  +   I   
Sbjct: 595 TFIEMIVFLTMVYYLLSASRTRWLPLQWASDLSAVTTADGSSAGNQHHITVAIEHAIFGV 654

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-- 272
           F+    +A+  GL     + L  +       +   + A IP   P       I  L    
Sbjct: 655 FVLSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATVFAAIPIMPPYIVAIFGIVELWLVR 714

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G    A    +     +   D                  T   ++GG+  +GL G  IGP
Sbjct: 715 GEGAAALVFTVASFAPVMFAD----ATFYREVKGSHPYVTGLAIIGGMYWLGLQGAIIGP 770

Query: 333 VLMALIAVIWKESIMAIK 350
           +++ L  V+    +  +K
Sbjct: 771 IVLCLCLVLVNVYLQHVK 788


>gi|307728406|ref|YP_003905630.1| hypothetical protein BC1003_0335 [Burkholderia sp. CCGE1003]
 gi|307582941|gb|ADN56339.1| hypothetical protein BC1003_0335 [Burkholderia sp. CCGE1003]
          Length = 361

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 82/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +  + +  L  L    +   +  V  V       + +        
Sbjct: 78  RHMSSGRARWLAVVFLATVIVGALTGLTLGIIEHFENDVPSVQKLLDQAMQLIDQ----- 132

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 +     L             L     + + +        F    + +I   I  
Sbjct: 133 ARGRIPQFIASTLPVDTEQMKTKAAELMQTHANMLQQSGKTAARAFTHILIGMIIGAIIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               +    +           F     + +    +++ +      I A+  G+ L     
Sbjct: 193 VSAQKQMQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISAINAVFTGIFLLVVLP 246

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L +IT I+ ++P    +    + + + +  +   A     +  +   + 
Sbjct: 247 IFHDQLPLSKTLVLITFIVGLLPVIGNLISNTIIVAVALSVSFPAAVMSLAFLILIHKLE 306

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   +VGG I+         ++      GL G+   P+  A I 
Sbjct: 307 -YFLNARIVGGQIEARAWELLVAMLVMEAAFGLPGVIAAPIFYAYIK 352


>gi|238794975|ref|ZP_04638571.1| hypothetical protein yinte0001_11120 [Yersinia intermedia ATCC
           29909]
 gi|238725678|gb|EEQ17236.1| hypothetical protein yinte0001_11120 [Yersinia intermedia ATCC
           29909]
          Length = 336

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/342 (10%), Positives = 92/342 (26%), Gaps = 11/342 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + M   Q  +   I  +  + L       +  ++  ++      +   F     +     
Sbjct: 2   QIMNLKQARITSFIFVMGGILLLLPLNLLSCFMAGFLVYEIVNILTPHFQKVIGDKR--A 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L +  L  +    +  + + +  +   N     + + +           L
Sbjct: 60  RWLVVAVISTLVVSLLTTIIGTIVGYLMQDMKNISGINTRIAFILQDVQQEVAKYLPGYL 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               +     +    +  L    +  + +      +  L   +    + +       D  
Sbjct: 120 PLSVVELKNEILSRLQQHLV--LLQTMGKSILHGLVTMLIGMVLGAIVSLCSIDSTGDRP 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L      L  A+   +   V     +T            L+         +P   
Sbjct: 178 LLKSELMKRISLLSQAFRNIVFAQVKISTINTVFS------AIFLLGVLPLCGIYIPLAK 231

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V T I  ++P    +    +     +  ++  A    L+  +        L   +VG
Sbjct: 232 TLVVFTFIFGLLPVIGNLISNTIVFISGLSVSLGVALIALLYLIVIHKFE-YFLNARIVG 290

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I          ++      GL G+   P+  A +    +E
Sbjct: 291 TKINAHSWEILLAMLIFEAAFGLAGVVAAPIYYAYLKSELRE 332


>gi|313639224|gb|EFS04160.1| YubA [Listeria seeligeri FSL S4-171]
          Length = 95

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 29/73 (39%)

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
             L +   +   +  K + P ++G  +K+  +   F ++      G+LG+       A++
Sbjct: 1   VKLVIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILIAGNLFGVLGVIFAVPGYAVL 60

Query: 339 AVIWKESIMAIKE 351
            VI     +  K 
Sbjct: 61  KVIVTHVFIWFKR 73


>gi|71988642|ref|NP_001022686.1| hypothetical protein M01F1.4 [Caenorhabditis elegans]
 gi|14530488|emb|CAA86517.2| C. elegans protein M01F1.4a, confirmed by transcript evidence
           [Caenorhabditis elegans]
          Length = 808

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 77/258 (29%), Gaps = 14/258 (5%)

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
              +     ++   +  +      ++      +     + ++ +  +      FGM  L+
Sbjct: 536 VTDLTALKDELTLIVKENLDTLMGIAQSIGAILAVNVSIFSSLLVSLAGIILSFGMDLLN 595

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSL--------GEHLFPAYWKKISRIVPKVIRST 214
             + +I  +  +++      +    L            +         I+  +   I   
Sbjct: 596 TFIEMIVFLTMVYYLLSASRTRWLPLQWASDLSAVTTADGSSAGNQHHITVAIEHAIFGV 655

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK-- 272
           F+    +A+  GL     + L  +       +   + A IP   P       I  L    
Sbjct: 656 FVLSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATVFAAIPIMPPYIVAIFGIVELWLVR 715

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
           G    A    +     +   D                  T   ++GG+  +GL G  IGP
Sbjct: 716 GEGAAALVFTVASFAPVMFAD----ATFYREVKGSHPYVTGLAIIGGMYWLGLQGAIIGP 771

Query: 333 VLMALIAVIWKESIMAIK 350
           +++ L  V+    +  +K
Sbjct: 772 IVLCLCLVLVNVYLQHVK 789


>gi|262278253|ref|ZP_06056038.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258604|gb|EEY77337.1| conserved hypothetical protein [Acinetobacter calcoaceticus
           RUH2202]
          Length = 338

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 100/337 (29%), Gaps = 9/337 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + + N Q ++   I+  I +         A   +  +I      + S      +      
Sbjct: 2   QNLNNRQSLIASYILMGIFLLSVIPLHLLASFFAGFLIYEIIISLSSVVERYIDGQRAR- 60

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
                   + L IV +  + ++    +  +V  +     H I      + +      S+ 
Sbjct: 61  ----IFISILLSIVTISLIGFFITSLISFVVYDLKGVGLHSINTKVDQTLLHLQAEISKY 116

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
              ++    +           + +  +   +S      +   +  + + I +        
Sbjct: 117 LPGYIPDSVTDLKDEIFAFMKDNVTTLKNASSDILHNLVTMVMG-LIIGILVAIHGFHRR 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      SL              +V   I+ + +   +  +   ++L    W   +P   
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFKNVVFAQIQISAINTLLFILFAFILLPL--WGVHLPFAK 233

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T +  +IP    +    ++    +  ++  A    L+  +   +    +   ++G
Sbjct: 234 TLTILTFMFGLIPILGNLISNTLTFIAALTVSLGLAGAALLYLVLVHKLE-YFVNAKIIG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             I          ++      GL GL   P+  A + 
Sbjct: 293 HKINANAWEILLAMLVFESIFGLGGLIAAPIFYAYLK 329


>gi|308502077|ref|XP_003113223.1| hypothetical protein CRE_25163 [Caenorhabditis remanei]
 gi|308265524|gb|EFP09477.1| hypothetical protein CRE_25163 [Caenorhabditis remanei]
          Length = 832

 Score = 56.9 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 11/235 (4%)

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA-----LFFFYR 179
           + +    ++ +   + L  +    I  F       F++  + +  +          +   
Sbjct: 586 QSIGSILAVNVTIFSSLIASFAGIILSFGLDLLNTFIELIVFLTMVYYLLSASRNRWLPL 645

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              S    + +  +         I+  +   I   F+    +A+  GL     + L  + 
Sbjct: 646 QWASDLSAVTATEDSTAVPVQHHITAAIEHAIFGVFILSAKMAVFYGLYTYFVHSLFDLN 705

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLR 297
                 +   + A IP   P       I  L    G    A    L     +   D    
Sbjct: 706 IVFVPSMAATLFAAIPIMPPYIVAVFGIVELWLVRGEGAAALVFALASFAPVMFAD---- 761

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                         T   ++GG+  +GL G  IGP+++ L  V+    +  +K +
Sbjct: 762 ATFYKEVKGSHPYVTGLAIIGGMYWLGLQGAIIGPIILCLCLVLVNVYLQHVKPS 816


>gi|315301769|ref|ZP_07872818.1| YubA [Listeria ivanovii FSL F6-596]
 gi|313629860|gb|EFR97944.1| YubA [Listeria ivanovii FSL F6-596]
          Length = 111

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 35/89 (39%)

Query: 263 TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
              +I + I  + +    L +   +   +  K + P ++G  +K+  +   F ++     
Sbjct: 1   ITPAIIIAIVTSPWLLVKLIIVWCVVQLLEGKFISPQVMGKTLKVHPITILFVILIAGNL 60

Query: 323 MGLLGLFIGPVLMALIAVIWKESIMAIKE 351
            G+LG+       A++ VI     +  K 
Sbjct: 61  FGVLGVIFAVPGYAVLKVIVTHVFIWFKR 89


>gi|259908457|ref|YP_002648813.1| hypothetical protein EpC_18060 [Erwinia pyrifoliae Ep1/96]
 gi|224964079|emb|CAX55585.1| Putative membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|283478405|emb|CAY74321.1| UPF0118 membrane protein MTH_1211 [Erwinia pyrifoliae DSM 12163]
          Length = 339

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 88/334 (26%), Gaps = 23/334 (6%)

Query: 18  FIILVSLYFLKGF-FAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++  +LY +      P   A  I +       P+    +         +  ++   ++ 
Sbjct: 18  LLVFAALYAVFPLRLLPCFLAGFIVYEIILALTPLIERLVKGPVARWISIMFLSVTLILA 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L       + +           +   A           +        +      +   Q+
Sbjct: 78  LVTGITKLIGFMLNDL------QNPAAFHATASKLLEDAQHTLSPVITRYLPSDIDELQT 131

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I            F    A  F  + +   L  I  +        D       LD L 
Sbjct: 132 RMIGWLREHLVVVQTFGRNAAHTFATMLIGMLLGAIISLRISAGKRPDAPLKEAMLDRL- 190

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAI 250
                     ++     V+ +      +  +  G  L     L G+       + V+T +
Sbjct: 191 --------SILAAAFHNVVFAQIKVSLVNTVLTGAFLFGVLPLFGLHFPFGKTVVVLTFV 242

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P    +    V + + +  ++  A    ++  +   +    +   + G  I     
Sbjct: 243 AGLLPIIGNLISNTVIVLIGLSISLEAALIALVYLVLIHKLE-YFINARIFGSRISAKTW 301

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                ++      GL G+   PV  A +    + 
Sbjct: 302 EILLAMLVFESAFGLAGVIAAPVYYAYLKAELRA 335


>gi|323978261|gb|EGB73347.1| TqsA transporter [Escherichia coli TW10509]
          Length = 269

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 68/263 (25%), Gaps = 21/263 (7%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ IIL  + F      P + A+ I     P+    +  +         I   
Sbjct: 12  KIVIMLGMLVIILCGIRFAAEIIVPFILAIFIAVILNPLVQHMVRWRV-PRVLAVSILMT 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++   ++ L +L        + L             +   L  +   +   +L      
Sbjct: 71  IIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQAIEPLLQRVGIDVSVDQLAHYIDP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +     + +     +N +  I         + L+                     +  + 
Sbjct: 131 NAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEV------------------PQLPGKF 172

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             +     P       +     +    +  T I+I  GLV  +      V      G++ 
Sbjct: 173 QQM--MARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLA 230

Query: 249 AIMAMIPGGAPISFTAVSIYLLI 271
             +  IP    +           
Sbjct: 231 FALNYIPNIGSVLAAIPLSLRYW 253


>gi|326674974|ref|XP_001340397.4| PREDICTED: transmembrane protein C9orf5-like, partial [Danio rerio]
          Length = 559

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 74/251 (29%), Gaps = 5/251 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
            + +        +      S +   +       + L    S  +       T  +  +  
Sbjct: 268 HMHRQNSWLGDILDWQDIASFLQENIETLLSILESLWVVMSRNVGLLISTTTTLLTVLFH 327

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
             +      L   + +  +   L         +   +              I + V + I
Sbjct: 328 SGTALLNFALSLVIFLTTLFYLLSSSGEYYKPVKWVISLTPLSQPGPSSNIIGQSVEEAI 387

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
           R  F     +A   GL     + + G+        + AI+  +P          ++  L 
Sbjct: 388 RGVFDASLKMAGFYGLYTWLTHTIFGINIVFIPSAMAAILGAVPFLGTYWAALPAVLDLW 447

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +     A  L  +  +  + VD  +   + GG        T   + GG   +GL G  
Sbjct: 448 LAQAEGVKALLLLFFHLLPTYFVDTAIYSDISGGG---HPYLTGLAVAGGAYYLGLEGAI 504

Query: 330 IGPVLMALIAV 340
           IGP+L+ ++ V
Sbjct: 505 IGPILLCILVV 515


>gi|283850583|ref|ZP_06367871.1| putative permease [Desulfovibrio sp. FW1012B]
 gi|283574154|gb|EFC22126.1| putative permease [Desulfovibrio sp. FW1012B]
          Length = 346

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 88/326 (26%), Gaps = 13/326 (3%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  + + L F    FA +++ L++              +        V+  +    +  
Sbjct: 23  VLTGLALFLVFPLHLFAALMAGLLVFELIHAAAPLLRVTRIGHRRAKLVVVGLLAAGIVT 82

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +   +   +L      + +         +   +        A  L        + L +
Sbjct: 83  GLVFVAWKSVVLLHHHESAGIPSLLTKMAEILDNVRATLPAWLARNLPDNIEDIDKELAM 142

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                            A +     +   L+ I + + L                     
Sbjct: 143 RLREHAA----------AMQQAGKAISLLLAHIVVGLILGAILSLSAEAEPGSRRPLAGA 192

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAM 253
                ++IS     V+ +      +      L L  A    G  +P    L  +T ++ +
Sbjct: 193 LAERARRISEAFRAVVFAQVRISALNTFLTFLYLLVALPAMGYHLPLAKTLVALTFVVGL 252

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +    V + + +  +   A     +      +    L   +VGG I        
Sbjct: 253 LPVVGNLVSNTVIVIVSLSVSFAVAVWSLAFLIAVHKLE-YFLNARIVGGHIHARTWELL 311

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++      GL GL   P+  A + 
Sbjct: 312 LAMLAMEAAFGLAGLVAAPIYYAYLK 337


>gi|260549690|ref|ZP_05823907.1| permease [Acinetobacter sp. RUH2624]
 gi|260407207|gb|EEX00683.1| permease [Acinetobacter sp. RUH2624]
          Length = 338

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 102/340 (30%), Gaps = 15/340 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIG---FTSWPIYSSFISKKEESS 59
           +++ N Q ++   I+  I +         A   +  +I     +   I   +I  +    
Sbjct: 2   QSLSNRQSLIASYILMGIFLLSVIPLHLLASFFAGFLIYEIIISLSSIVERYIDGQRARI 61

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
               +++ ++V  +       + +         +  +       +   +         + 
Sbjct: 62  FISILLSIITVSLIAFFITSLISFVVYDLKGVGIHNINNKVDQTLLHLQTEIGKYLPGYI 121

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            +  T+      +    + T LK    D +  F +    + +   ++I            
Sbjct: 122 PDSVTELKDEIFAFMKDNVTTLKNASSDILHNFVTMIMGLIIGILVAI---------HGF 172

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +      SL              +V   I+ + +   +  +   ++L    W   +P
Sbjct: 173 HRRTPQPIFKSLLIQRIQKLSISFRNVVFAQIKISAINTLLFILFAFVILPI--WGVHLP 230

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T +  +IP    +    ++    +  ++  A    L+  +   +    +   
Sbjct: 231 FAKTLTILTFLFGLIPILGNLISNTLTFIAALTVSLGLAGVALLYLVLVHKLE-YFINAK 289

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++G  I          ++      GL GL   P+  A + 
Sbjct: 290 IIGHKINANAWEILLAMLIFESIFGLGGLIAAPIFYAYLK 329


>gi|268573019|ref|XP_002641487.1| Hypothetical protein CBG09778 [Caenorhabditis briggsae]
          Length = 816

 Score = 56.9 bits (136), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 11/235 (4%)

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA-----LFFFYR 179
           + +    ++ +   + L  +    I  F       F++  + +  +          +   
Sbjct: 569 QSVGSILAVNVSIFSSLLVSFAGIILSFGMELLNTFIELIVFLTMVYYLLSASRTRWLPL 628

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              S    + +  E +       I+  +   I   F+    +A+  GL     + L  + 
Sbjct: 629 QWASDLSAVTANDETMSAPAQHHITAAIEHAIFGVFILSAKMAVFYGLYTYFVHSLFDLN 688

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLR 297
                 +   + A IP   P       I  L    G    A    L     +   D    
Sbjct: 689 IVFVPSMAATLFAAIPIMPPYIVAIFGIVELWLVRGEGAAALVFTLASFAPVMFAD---- 744

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKEN 352
                         T   ++GG+  +GL G  IGP+++ L  V+    +  +K +
Sbjct: 745 ATFYKEVKGSHPYVTGLAIIGGMYWLGLQGAIIGPIILCLCLVLVNVYLQHVKPS 799


>gi|269962256|ref|ZP_06176609.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833087|gb|EEZ87193.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 80

 Score = 56.5 bits (135), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +VD  L+P ++G  +++P      G +GG+ + G+LG+FIG   +A    ++ + + A  
Sbjct: 1   MVDNFLKPLILGRGLEVPMPIVLIGAIGGMMSGGILGMFIGAAFLAAGYQVFMKWVEAQT 60

Query: 351 ENKEKI 356
           +  E  
Sbjct: 61  DEPETP 66


>gi|322806089|emb|CBZ03656.1| permease [Clostridium botulinum H04402 065]
          Length = 200

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 49/172 (28%), Gaps = 9/172 (5%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           I   +        P + A  I +   P+   F +K +    F  ++  + V+ L I+ + 
Sbjct: 32  IYSFMKSFLSILVPFIWAFGIAYILNPLMKYFQNKFKLKRIFSIIMTYIIVIGLLILFIN 91

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
                 +  + +L           I                    +  ++  +L      
Sbjct: 92  TFVPKIIKNIGDLFVHSPDYINQTIQWFNDNIKYSKVYDMLMENYQISNNIPNLLNK--- 148

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
                 I  +        + F  + +  +F +I   +   D  S+ + L   
Sbjct: 149 ------ISNLTNTFLNTTIKFTSFLVRFVFGLIISIYLLLDKESLIENLKKF 194


>gi|310767658|gb|ADP12608.1| hypothetical protein EJP617_29270 [Erwinia sp. Ejp617]
          Length = 339

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/334 (11%), Positives = 89/334 (26%), Gaps = 23/334 (6%)

Query: 18  FIILVSLYFLKGF-FAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++  +LY +      P   A  I +       P+    +         +  ++ + ++ 
Sbjct: 18  LLVFAALYAVFPLRLLPCFLAGFIVYEIILALTPLIERLVKGPVARWISIMFLSVMLILA 77

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L       + +           +   A           +        +      +   Q+
Sbjct: 78  LVTGITKLIGFMLNDL------QNPAAFHATASKLLEDAQHTLSPVITRYLPSDIDELQT 131

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
             I            F    A  F  + +   L  I  +        D       LD L 
Sbjct: 132 RMIGWLREHLVVVQTFGRNAAHTFATMLIGMLLGAIISLRISAGKRPDAPLKEAMLDRL- 190

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAI 250
                     ++     V+ +      +  +  G  L     L G+       + V+T +
Sbjct: 191 --------SILAAAFHNVVFAQIKVSLVNTVLTGAFLFGVLPLFGLHFPFGKTVVVLTFV 242

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
             ++P    +    V + + +  ++  A    ++  +   +    +   + G  I     
Sbjct: 243 AGLLPIIGNLISNTVIVLIGLSISLEAALIALVYLVLIHKLE-YFINARIFGSRISAKTW 301

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                ++      GL G+   PV  A +    + 
Sbjct: 302 EILLAMLVFESAFGLAGVIAAPVYYAYLKAELRA 335


>gi|331677559|ref|ZP_08378234.1| putative permease [Escherichia coli H591]
 gi|331074019|gb|EGI45339.1| putative permease [Escherichia coli H591]
          Length = 181

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 1/171 (0%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
             W   L    +  +            +    A+  G   +   L ++   
Sbjct: 125 AGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHIGRFMVHCALMLLLQC 175


>gi|330946225|gb|EGH47411.1| hypothetical protein PSYPI_36155 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 226

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 88/204 (43%), Gaps = 5/204 (2%)

Query: 76  VPLLFLFYYGMLEMKELVSKVVLAN-QHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            PL++L +     +++    +           P+WL+ IP            +    +  
Sbjct: 5   APLVWLGFNLADHVRDATGLIKDIQVDGLPDPPQWLAGIPLVGERLVALWTTIDQQGAAF 64

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +         ++I   +++ G   L+  LSI+F      FFYRDG  ++  + SL E 
Sbjct: 65  MATLKPHLGQVGNWILARSAQIGSGILELTLSIVFAF----FFYRDGPRLAAFVLSLLER 120

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           L     +    +V   ++    G+   A  + ++    + +AG+P  + LG++T + ++I
Sbjct: 121 LIGERAQYYLDLVAGTVQRVVNGVIGTAAAQAVLALIGFLIAGIPGALVLGILTFLFSLI 180

Query: 255 PGGAPISFTAVSIYLLIKGNIFNA 278
           P G P+ +   + +L+ +G + + 
Sbjct: 181 PMGPPLVWLPATAWLVWQGGVRHG 204


>gi|300693388|ref|YP_003749361.1| permease transmembrane protein [Ralstonia solanacearum PSI07]
 gi|299075425|emb|CBJ34720.1| putative permease transmembrane protein [Ralstonia solanacearum
           PSI07]
          Length = 342

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 87/336 (25%), Gaps = 13/336 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                      ++  +I   L+       P   A  + +       + +  +   S    
Sbjct: 10  PSRTVDTASYVLVAVMIAAVLWL---HLLPAAIAGFLVYALARRLEARLRARRALSKRAK 66

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA + V  +  + L  +       + E    +         V   L D     +A  + 
Sbjct: 67  SIAVLGVFLIAALILAGMGLGIGR-LVEHGHGLDGMLLRVADVLDNLRDSLPPTFADYVP 125

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    L  + +          I        M  +   L  +          R    
Sbjct: 126 QSVSELRARLVEMLKEHGHQVSTLGI-DGLRASAMALVGLILGAMMAWSETPDPARSKPL 184

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +  L  LG         + +       +     +        L+         VP   +
Sbjct: 185 SAALLQRLGR-------LETAFEAVVFAQVKISALNTALAAIYLMGVLPVLGLHVPYSKS 237

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++T +  +IP    +      + + +  ++  A     +  I   +    +   ++G 
Sbjct: 238 LVLLTFVAGLIPVAGNLISNTAIVLMSVTVSLELAVASLAFLVIVHKLE-YFVNARIIGS 296

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            I          L+      G+ G+   PVL A + 
Sbjct: 297 RIDARAWELILALIVMEALFGVGGVIAAPVLYAYLK 332


>gi|183232629|ref|XP_653434.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169801952|gb|EAL48046.2| hypothetical protein EHI_006110 [Entamoeba histolytica HM-1:IMSS]
          Length = 361

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/327 (14%), Positives = 105/327 (32%), Gaps = 13/327 (3%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
           FT  P+    I       T  + +    ++ L  +    +    ++E  +L++ +     
Sbjct: 39  FTLIPLLVITIFLFVNRRTLASFMIITILLSLVSLLSTVVIKQSIIEFHQLINTITKLVT 98

Query: 102 HGIP---------VPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +            V    S      +  +L   +    +++K      LK       P F
Sbjct: 99  NLSEDSVNLLISRVEESYSGQIILEYMDKLGLMNYLSLKTIKPAVLQGLKLLSSQVQPYF 158

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
                    D   +    I +L +F     +I   +  L         + I   V     
Sbjct: 159 LINLASSVTDNIFAFFIFIYSLLYFLIYQNTILNGISQLIPFDV-EVVQIIRNGVASTSL 217

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
              L  +++ I +  +    + LA +P  +   +I A++A++P  + +     +  +L  
Sbjct: 218 RLILMNSLLFIFKFTLTFVTFSLAHLPYKMVCSIICALLAILPAFSNMIVWLPAGLVLFF 277

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                     +W      +    +  +       +        +V GV   G+ G  +GP
Sbjct: 278 QGNTTG---MIWFISVHAVTYFIIDGWFYSFIPDIIPYFVGLSVVFGVYVFGITGCILGP 334

Query: 333 VLMALIAVIWKESIMAIKENKEKISSN 359
           ++  +   +    I+  +  K+KI  +
Sbjct: 335 LVFVMTMTLKDIFILQNQRLKQKIKQD 361


>gi|254251401|ref|ZP_04944719.1| hypothetical protein BDAG_00586 [Burkholderia dolosa AUO158]
 gi|124894010|gb|EAY67890.1| hypothetical protein BDAG_00586 [Burkholderia dolosa AUO158]
          Length = 360

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 81/280 (28%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +            A+ 
Sbjct: 84  ARWVAVVLLSVAIVGALTGLTIGIIEHFEHTVPNLQTLLGQLMQIVEQTRARTPAWIANL 143

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L            +L  + +           A  FG +     +  +  I          
Sbjct: 144 LPVDVEQMKTKAAVLMHSHMDQ-LQQSGKSVARGFGHVLFGMIIGAMIAIGVEH------ 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   GL L  A  +    +P
Sbjct: 197 ----GKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGLYLLVALPIFHERLP 252

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  I   +    L   
Sbjct: 253 LSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVIIHKLE-YFLNAK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 312 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLK 351


>gi|298527597|ref|ZP_07015006.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|298497391|gb|EFI32685.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 146

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 1/119 (0%)

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNAT 279
           +A+ +   +G+   + GVP  + L  +    A IP    +       +  L+   I  A 
Sbjct: 1   MALTDAAGVGAGLAVMGVPLALPLASLVFFGAFIPLIGAVVAGFLAVVVALLAKGIGYAL 60

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
                      +    L+P ++G  + +  L     +  G    G++G  +    +A  
Sbjct: 61  ITVGLLIAVNQLEAHLLQPLVMGRAVSIHPLAVVLAIAAGGVLAGVVGALLAVPTVAFF 119


>gi|331677560|ref|ZP_08378235.1| putative permease [Escherichia coli H591]
 gi|331074020|gb|EGI45340.1| putative permease [Escherichia coli H591]
          Length = 123

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 1/109 (0%)

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             +  ++  G         I+L   G+    T L +W  +   + D  +RP L+     L
Sbjct: 1   MILSCLVQLGPLPVLIPAIIWLYWTGDTTWGTVLLVWSGVVGTL-DNVIRPMLIRMGADL 59

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
           P +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 60  PLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 108


>gi|115352891|ref|YP_774730.1| putative transporter [Burkholderia ambifaria AMMD]
 gi|172061739|ref|YP_001809391.1| putative transporter [Burkholderia ambifaria MC40-6]
 gi|115282879|gb|ABI88396.1| putative transporter [Burkholderia ambifaria AMMD]
 gi|171994256|gb|ACB65175.1| putative transporter [Burkholderia ambifaria MC40-6]
          Length = 360

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 82/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              ++ V +    +  L  L    +   +  V  +       + +    +      W + 
Sbjct: 84  ARWVSVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQ-TRARTPAWIAN 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +   ++   L                A  FG +     +  +  I          
Sbjct: 143 LLPVDVEQMKAKAALLMHSHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEH------ 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   G+ L  A  +    +P
Sbjct: 197 ----GKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLP 252

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  +   +    L   
Sbjct: 253 LSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLE-YFLNAK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 312 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLK 351


>gi|225025389|ref|ZP_03714581.1| hypothetical protein EIKCOROL_02287 [Eikenella corrodens ATCC
           23834]
 gi|224941833|gb|EEG23042.1| hypothetical protein EIKCOROL_02287 [Eikenella corrodens ATCC
           23834]
          Length = 352

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/333 (14%), Positives = 100/333 (30%), Gaps = 13/333 (3%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATV---- 68
           + +    L  L   F P+L ++I+ +        +      +    +TFL     V    
Sbjct: 14  ILMAAALLVILYFRFLPLLLSIILTYIFINRTNGLILWMRHRLLPHNTFLHRSLNVRNIN 73

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V   F + L+ L    M      +            +   L++              L 
Sbjct: 74  LVSATFTISLVLLAITLMALGVYRLIHSGHITVMLAKLAAILANTKNNGELPPAILNMLP 133

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +    +   L T     + R +      F+   + +I   +    F+R     S+  
Sbjct: 134 ENLAEIKAAAAELLTEYGATLTRISKNSFTSFVYVLIGVIIGALLS--FHRLNTRRSRHQ 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGV 246
               +               +V  +      I      + L       GV  P  + + V
Sbjct: 192 MPPFKVQLVRRITNFQTSFERVFIAQVKISLIDTAVTAVYLYLILPAFGVELPFRLTVLV 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  ++ ++P    +    V I L +  +++ A    ++  +   +    L   ++G  I+
Sbjct: 252 IAFVVGLVPVAGNLVSNTVIIILSLGASLYVAAASLVFLVVVHKLE-YFLNAKIIGSQIE 310

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                    +V   R  G+ G+   PV  A + 
Sbjct: 311 SSAWELLLVMVVFERIFGISGIITSPVYYAYLK 343


>gi|171318654|ref|ZP_02907800.1| putative transporter [Burkholderia ambifaria MEX-5]
 gi|171096162|gb|EDT41085.1| putative transporter [Burkholderia ambifaria MEX-5]
          Length = 360

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +    +      W + 
Sbjct: 84  ARWVAVVLLSIAIVGGLTGLTIGIIDHFEHTVPNLQSLLGQLMQIVEQ-TRARTPAWIAN 142

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +   ++   L                A  FG +     +  +  I          
Sbjct: 143 LLPVDVEQMKTKAALLMHSHMDQLQQGGKSVARGFGHVLFGMIIGAMIAIGVEH------ 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   G+ L  A  +    +P
Sbjct: 197 ----GKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLP 252

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  +   +    L   
Sbjct: 253 LSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLE-YFLNAK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 312 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLK 351


>gi|209363873|ref|YP_002268283.1| permease [Coxiella burnetii Dugway 5J108-111]
 gi|207081806|gb|ACI23121.1| permease [Coxiella burnetii Dugway 5J108-111]
          Length = 96

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 20/66 (30%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L P L    + L  +     ++      G  G+F    L  L+ ++      A  
Sbjct: 30  LDGNLLVPLLFSEAMDLHPIVIILSILVFGGIWGFWGIFFAIPLATLVKMVLNAWPKARI 89

Query: 351 ENKEKI 356
              +  
Sbjct: 90  SQNDTP 95


>gi|319945483|ref|ZP_08019743.1| putative transmembrane protein [Lautropia mirabilis ATCC 51599]
 gi|319741269|gb|EFV93696.1| putative transmembrane protein [Lautropia mirabilis ATCC 51599]
          Length = 358

 Score = 56.5 bits (135), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/336 (12%), Positives = 94/336 (27%), Gaps = 24/336 (7%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE--------SSTFLA 63
           +  ++   +   +  LKG   PVL AL++   S  +    +   +            + A
Sbjct: 10  VLGLLATAVAAFVIILKGLVIPVLLALLVYAWSCLLADRIVQAHKPSALSLGYYPKRWPA 69

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           VI+   V  L I   +FL Y+ +       + + +           L        A  + 
Sbjct: 70  VISGTVVSVLVITAFVFLTYWTIHLASS--NDLRIFLVRIEDSLEVLRQALPEAAAKVIP 127

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    L  +  +     G        +    +F     ++  +        R    
Sbjct: 128 ENWADLKAQLFNVVRSKAAVLGSVGGVVVHTIVQSLFAILVGALAAVSTWQPHRLRSDRL 187

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
              +L  + E +  A  +                         L +    +   +P    
Sbjct: 188 FIARLLVVLERVAIAQMRIALFN-------------TTMTALYLFVVLPLFQVQLPFRGL 234

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L + T +  ++P    +    V   +    + + A    ++  +   +    +    VG 
Sbjct: 235 LCMFTLLTGVLPVLGNLMANTVLSLISFAVSPWVAVSSLVFLVLIHKLE-YVINARTVGS 293

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            I +        ++ G    G+ GL   P+L     
Sbjct: 294 KISMNSWEILAAMLTGESLFGVPGLVTAPLLYPFFK 329


>gi|262044147|ref|ZP_06017220.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038485|gb|EEW39683.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 197

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 1/191 (0%)

Query: 3   ETMLNPQGIMRWMIMFIILV-SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    PQ ++  + + +I++  L+ ++ F      A  +   +WP+              
Sbjct: 6   QPRDIPQILLSVLFLALIIISCLWVVQPFILSFAWAGTVVIATWPVLLRLQRVLFGKRLL 65

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +  T+ +  LF++P+  L    +     L+  +   N          S    G     
Sbjct: 66  AVLAMTLLLFLLFVIPIALLVNSLVDNSVPLIKLISSGNVTLPDFAWLNSVPLVGDKLYS 125

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
            W   L    S  +            +    A+  G + +   L ++F  +  +   +  
Sbjct: 126 AWHGLLDMGGSAIMAKVRPYIGTTTSWFVGQAAHIGKLLVYCGLMLLFSALLYWRGEQVA 185

Query: 182 FSISQQLDSLG 192
           +        L 
Sbjct: 186 YGFRYFATRLA 196


>gi|290994094|ref|XP_002679667.1| predicted protein [Naegleria gruberi]
 gi|284093285|gb|EFC46923.1| predicted protein [Naegleria gruberi]
          Length = 531

 Score = 56.5 bits (135), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 94/278 (33%), Gaps = 12/278 (4%)

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
                 + V  V             +  I G  +          +  S       ++ +N
Sbjct: 218 VANSQYDFVKNVTNLIHTKNTTNDSIETILGPKFCKSQVMYFQDNLYSFIQYVLNWMTSN 277

Query: 145 G------IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                  +    +        F D+  S    I+ +F+F ++       +  +   L   
Sbjct: 278 ISVFGYTLQSFFQTLVDLISNFKDFVFSSFIFILFVFYFVQNDEFFIDSMKRISP-LTEE 336

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               +   +   I  T   +   AI   +V   ++++ G       G ++A +++IP  +
Sbjct: 337 ESTILIDSIDTNIIKTLYYLCTFAICNFIVTTLSFYIVGFEIIFIFGFLSAFLSVIPIIS 396

Query: 259 -PISFTAVSIYLLIKGNIFNATCLFLWGA-IELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
             I +   +I++L +  I ++  + ++ + I L+++D  +                   +
Sbjct: 397 NWIIWIPATIFVLSRDGIISSNWIIIFASHISLYVIDNIIYTNFFKKQ---HPTMLGVSI 453

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKE 354
           + GV      G+  GP+ + L    +  +   I ++K+
Sbjct: 454 LLGVYVFNHSGIIKGPLFITLGMTFFDIATKYINKDKK 491


>gi|284800166|ref|ZP_05985853.2| putative membrane protein [Neisseria subflava NJ9703]
 gi|284795757|gb|EFC51104.1| putative membrane protein [Neisseria subflava NJ9703]
          Length = 337

 Score = 56.1 bits (134), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/329 (14%), Positives = 103/329 (31%), Gaps = 9/329 (2%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + L  L  L   F P+L ++I+ +        +      +    +T L        + L 
Sbjct: 1   MGLALLIVLHYHFLPLLLSVILTYIFITRTNGVILKLRRRVLPRNTRLHKSLNAHNINLI 60

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
              L     + ++ M  L    ++   H   +   L+ I      S+     + +     
Sbjct: 61  STTLTLAIVFSIIAMMSLGIYHLIHGGHVGFMLAKLAAILEDTKNSQDLPAAILNMLPNN 120

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS--LG 192
           +          I+      +R     +   + I+  II           + +      L 
Sbjct: 121 MAEIKASAIKLIEEYRAALTRISKNSITSFVYILIGIIIGAMLSFHRLEMRKNRHKMPLF 180

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAI 250
           +               +V  +      I     GL L     L GV  P  + + +I  I
Sbjct: 181 KAELMRRIVNFETSFERVFLAQVKISLIDTFLTGLYLYLVLPLFGVDLPFKMTVLIIAFI 240

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFL 310
           + +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+    
Sbjct: 241 VGLIPVAGNLISNTIIIILSLGASLYVALASLVFLVVIHKLE-YFLNAKIIGSEIESSAW 299

Query: 311 PTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                +V   R  G+ G+ + PV  A + 
Sbjct: 300 ELLVAMVVFERIFGIGGIIVAPVYYAYLK 328


>gi|322421929|ref|YP_004201152.1| hypothetical protein GM18_4472 [Geobacter sp. M18]
 gi|320128316|gb|ADW15876.1| protein of unknown function UPF0118 [Geobacter sp. M18]
          Length = 334

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/347 (10%), Positives = 98/347 (28%), Gaps = 18/347 (5%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M    + P  +  +++  I + ++         V + L +   +  +      +    + 
Sbjct: 1   MDNRSIPPTLLASYLLSVIAVFTVLHF-HLLPSVFAGLAVYALTAKLALRLPVRWGSLTH 59

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +A+   +  +   +  +    +  +     + + +  A +    + R L          
Sbjct: 60  KVALAGIILFVIALVSSICLGLWSFLRGHHGMSNLLDTAAETLDNLKRNL---------P 110

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           E  T  L             +       I          F    L ++   +A+   +  
Sbjct: 111 EDLTAMLPDTVDELREQIVTMLREHGKNISSVGISGVKTFAHLLLGMVVGSLAVLHRFNK 170

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV-- 238
                     L      A    ++    KV+ +      +      L L     + G+  
Sbjct: 171 ENGFPPLASHL-----HARLLNLASAFDKVVFAQVKISALNTALTALYLAVVLPICGIYL 225

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    L ++T I  ++P    +      + + +  +        ++  +   +       
Sbjct: 226 PMVTLLILLTFIAGLLPVVGNLISNFTIVLISLGVSPMVGVASLVFLVLIHKLE-YFTNA 284

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +VG  +K         ++      G+ GL   PV+ A +    K  
Sbjct: 285 RIVGTEVKANVWELLCAMLVMEAIFGVAGLVAAPVVYAWLKAELKAY 331


>gi|107023713|ref|YP_622040.1| transporter [Burkholderia cenocepacia AU 1054]
 gi|116690800|ref|YP_836423.1| putative transporter [Burkholderia cenocepacia HI2424]
 gi|170734125|ref|YP_001766072.1| putative transporter [Burkholderia cenocepacia MC0-3]
 gi|254247196|ref|ZP_04940517.1| hypothetical protein BCPG_01981 [Burkholderia cenocepacia PC184]
 gi|105893902|gb|ABF77067.1| putative transporter [Burkholderia cenocepacia AU 1054]
 gi|116648889|gb|ABK09530.1| putative transporter [Burkholderia cenocepacia HI2424]
 gi|124871972|gb|EAY63688.1| hypothetical protein BCPG_01981 [Burkholderia cenocepacia PC184]
 gi|169817367|gb|ACA91950.1| putative transporter [Burkholderia cenocepacia MC0-3]
          Length = 360

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 81/280 (28%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +            A+ 
Sbjct: 84  ARWVAVVLLSIAIVGALTGLTLAIIEHFEHTVPNLQSLLGQLMQIVEQTRARTPAWIANL 143

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L            +L  + +           A  FG +     +  +  I          
Sbjct: 144 LPVDVEQMKTKAAVLMHSHMDQ-LQQSGKSVARGFGHVLFGMIIGAMIAIGVEQ------ 196

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VP 239
                ++             + +    +++ +      I A   G+ L  A  +    +P
Sbjct: 197 ----GKVRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAAFTGIYLLVALPIFHQRLP 252

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  +   +    L   
Sbjct: 253 LSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVVIHKLE-YFLNAK 311

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 312 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYLK 351


>gi|254175278|ref|ZP_04881939.1| putative membrane protein [Burkholderia mallei ATCC 10399]
 gi|160696323|gb|EDP86293.1| putative membrane protein [Burkholderia mallei ATCC 10399]
          Length = 344

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 80/287 (27%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 61  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 121 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 175

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      +      + L  A  
Sbjct: 176 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNTFFTAIYLLVALP 229

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 230 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 289

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 290 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 335


>gi|291539705|emb|CBL12816.1| Predicted permease [Roseburia intestinalis XB6B4]
          Length = 280

 Score = 56.1 bits (134), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/174 (12%), Positives = 48/174 (27%), Gaps = 10/174 (5%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
                 P L+A  +             +       +AV   +    +  V L F   Y +
Sbjct: 46  AGSVLFPFLAAFAVAVLLSGAVQFIAERMHIQRGIVAVAVVLFFYIILAVFLYFAGSYLV 105

Query: 87  LEMKELVSKVVLANQH-----GIPVPRWLSDIPGGMWASELWTKHLSHP-----QSLKIL 136
             + +   ++ +              +WL       + +EL  K           +  + 
Sbjct: 106 RLIYDTARELSVFFSDTIVPVMQRFYQWLDRFVSVFYPTELTGKTSGLHGVGEESAQTLK 165

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +   L +   D +    S        + + ++  +IA  F   +   I     +
Sbjct: 166 NAGKLMSGISDGVIDGVSGMAAGIPGFFMKLLITVIATVFMELEFPQIRAFFKA 219


>gi|134296976|ref|YP_001120711.1| putative transporter [Burkholderia vietnamiensis G4]
 gi|134140133|gb|ABO55876.1| putative transporter [Burkholderia vietnamiensis G4]
          Length = 361

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 82/280 (29%), Gaps = 14/280 (5%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A V +    +  L  L    +   +  V  +       + +    +      W + 
Sbjct: 85  ARWVAVVLLSIAIVGGLTGLTIGIIQHFEHTVPNLQSLLGQLMQIVEQ-TRARTPAWIAN 143

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L    +   ++   L                A  FG +     +  +  I          
Sbjct: 144 LLPVDVEQMKAKAALLMHSHMDQLQQGGKSVARGFGHVLFGMVIGAMIAIGVEH------ 197

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--GVP 239
                ++             + +    +++ +      I A   G+ L  A  +    +P
Sbjct: 198 ----GKVRRPLSTALVTRVSRFAESFRRIVFAQIKISAINAAFTGIYLLVALPIFQQRLP 253

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               L ++T I+ ++P    +    + + + +  ++  A     +  +   +    L   
Sbjct: 254 LSKTLVLVTFIVGLLPVIGNLVSNTLIVAVSLSVSMGTAIASLAFLIVIHKLE-YFLNAK 312

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL G+   P+  A + 
Sbjct: 313 IIGGQIESRAWELLLAMLIMEAAFGLPGVIAAPIFYAYVK 352


>gi|76811352|ref|YP_332191.1| hypothetical protein BURPS1710b_0778 [Burkholderia pseudomallei
           1710b]
 gi|254187775|ref|ZP_04894287.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
 gi|76580805|gb|ABA50280.1| putative membrane protein [Burkholderia pseudomallei 1710b]
 gi|157935455|gb|EDO91125.1| putative membrane protein [Burkholderia pseudomallei Pasteur 52237]
          Length = 344

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 80/287 (27%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 61  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 121 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 175

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 176 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 229

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +   +  A    ++  +   + 
Sbjct: 230 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVGMGTAIASLVFLVVIHKLE 289

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 290 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 335


>gi|209521306|ref|ZP_03270023.1| conserved hypothetical protein [Burkholderia sp. H160]
 gi|209498252|gb|EDZ98390.1| conserved hypothetical protein [Burkholderia sp. H160]
          Length = 361

 Score = 55.8 bits (133), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 83/299 (27%), Gaps = 16/299 (5%)

Query: 43  TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
               I                 +A V +  + +  L  L    +   ++ V  +      
Sbjct: 68  LVNTIAPRIERHMSSKR--ARWLAVVILSTVIVGALTALTLGIISHFEKDVPSMQALLDQ 125

Query: 103 GIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            + +              +    +L             L     + + +  +     F  
Sbjct: 126 AMQLIDE-----ARGRIPQFVANYLPVDTEQMKAKAAELMHTHANMLQQSGTTAARAFTH 180

Query: 163 YCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIA 222
             + +I   I      +    +           F     + +    +++ +      + A
Sbjct: 181 VLIGMIIGAIIAVGAQKHIQRLP------LSTAFVTRVTRFADAFRRIVFAQVKISALNA 234

Query: 223 IGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATC 280
           +   + L     L    +P    L ++T I+ ++P    +    + + + +  +   A  
Sbjct: 235 VFTAIFLLVILPLFHDTLPLSKTLVLVTFIVGLLPVIGNLISNTIIVAVALSVSFPAAIM 294

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++  +   +    L   +VGG I+         ++      G+ G+   P+  A I 
Sbjct: 295 SLVFLILIHKLE-YFLNARIVGGQIEARAWELLIAMLVMEAAFGIAGVIAAPIFYAYIK 352


>gi|299769213|ref|YP_003731239.1| hypothetical protein AOLE_04845 [Acinetobacter sp. DR1]
 gi|298699301|gb|ADI89866.1| hypothetical protein AOLE_04845 [Acinetobacter sp. DR1]
          Length = 338

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/337 (10%), Positives = 95/337 (28%), Gaps = 9/337 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + + N Q ++   I+  I +         A   +  +I      + S      +     +
Sbjct: 2   QNLNNRQSLIASYILMGIFLLSVIPLHLLASFFAGFLIYEIIISLSSVVERYIDGQRARI 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   +S++ + ++   F      +        +   N         L           +
Sbjct: 62  FISILLSIITISLIAFFFTSLISFVVHDLKGVGIHNINSKVDQTLLHLQAEISKYLPGYI 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +    +  +       I +  S   +      +  + + I +        
Sbjct: 122 PDSVTELKDEIFAFMKDNVT------ILKNTSSDILHNFVTMVMGLIIGILVAIHGFHRR 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      SL              +V   I+ + +   +  +   ++L    W   +P   
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFKNVVFAQIKISAINTLLFILFAFVLLPL--WGVHLPFAK 233

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T +  +IP    +    ++    +  ++  A    L+  +   +    +   ++G
Sbjct: 234 TLTILTFMFGLIPILGNLISNTLTFIAALTVSLGLAGAALLYLVLVHKLE-YFINAKIIG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             I          ++      GL GL   P+  A + 
Sbjct: 293 HKINANAWEILLAMLVFESIFGLGGLIAAPIFYAYLK 329


>gi|53724065|ref|YP_104584.1| hypothetical protein BMA3096 [Burkholderia mallei ATCC 23344]
 gi|52427488|gb|AAU48081.1| membrane protein, putative [Burkholderia mallei ATCC 23344]
          Length = 344

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 81/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 61  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 121 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 175

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 176 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 229

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 230 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 289

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 290 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 335


>gi|53718183|ref|YP_107169.1| hypothetical protein BPSL0544 [Burkholderia pseudomallei K96243]
 gi|52208597|emb|CAH34533.1| putative membrane protein [Burkholderia pseudomallei K96243]
          Length = 344

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 81/287 (28%), Gaps = 14/287 (4%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 61  RHMSSQRARWVAVVLLSTAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L             L    +D + +        F      +I   +  
Sbjct: 121 P-----EWISNLLPVDAEQMRAKAAGLMNRHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 175

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                       +L         A   + S    +++ +      + A    + L  A  
Sbjct: 176 IGID------RHKLRQPLSTALVARISRFSDAFRRIVFAQIKISALNAFFTAIYLLVALP 229

Query: 235 LAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
           +    +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   + 
Sbjct: 230 IFHQRLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE 289

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 290 -YFLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 335


>gi|83718800|ref|YP_441054.1| hypothetical protein BTH_I0497 [Burkholderia thailandensis E264]
 gi|83652625|gb|ABC36688.1| membrane protein, putative [Burkholderia thailandensis E264]
          Length = 344

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 10/285 (3%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     +A V +    +  L  L    +   +  V          + +        
Sbjct: 61  RHMSSQRARWVAVVLLSAAIVGGLAGLTIAVIEHFEHTVPNAQNLLGQVMQIVDQARTRT 120

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
                 E  +  L           T L    +D + +        F      +I   +  
Sbjct: 121 P-----EWISNLLPVDAEQMRAKATGLMNKHMDQLQQGGKSVARGFGHVLFGMIIGAMIA 175

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
                D   + Q L +        +     RIV   I+ + L     A+   + L   + 
Sbjct: 176 --IGVDRHKLRQPLSTALVARISRFSDSFRRIVFAQIKISALNAFFTALYLLVALPIFHQ 233

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              +P    L ++T I  ++P    +    + + + +  ++  A    ++  +   +   
Sbjct: 234 --RLPLSKTLVLVTFIAGLLPVVGNLISNTLIVAVSLSVSMGTAIASLVFLVVIHKLE-Y 290

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 291 FLNAKIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYVK 335


>gi|300716627|ref|YP_003741430.1| hypothetical protein EbC_20490 [Erwinia billingiae Eb661]
 gi|299062463|emb|CAX59580.1| Putative membrane protein [Erwinia billingiae Eb661]
          Length = 337

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/332 (9%), Positives = 86/332 (25%), Gaps = 19/332 (5%)

Query: 18  FIILVSLYFLKGF-FAPVLSALIIGF----TSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            +I  +L+ +      P   A  I +       P     +            I    +  
Sbjct: 16  LLIFAALFMIFPLRLLPCFLAGFIVYETILALTPWVERLVK-----GPIARWIIIFFLTV 70

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++ L+      +  +          +     +          + +  L          
Sbjct: 71  IIVLGLVVGVSKLIGFLLNDFQNPAAFHAAASKLLEDAQRTLSPVVSRYLPADIDELQHQ 130

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
           +       L    +    R A+      L   L    + + +         +   L    
Sbjct: 131 VVTWLREHLV--VVQTFGRTAAHTFATMLIGMLLGAIISLRISNVDTQDAPLRHALLERL 188

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
             L  ++   +   +   + +T L          L      +    P    + V+T +  
Sbjct: 189 TVLADSFHNVVFAQIKVSLVNTVL------TCGFLFGVLPLFDLHFPFGKTVVVLTFVAG 242

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P    +    V + + +  ++  A    ++  +   +    +   + G  I       
Sbjct: 243 LLPIIGNLISNTVIVLIGLSISLEAAVISLVFLMLVHKLE-YFINARIFGSRINAKTWEI 301

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              ++      GL G+   PV  A +    + 
Sbjct: 302 LLAMLVFESAFGLAGVVAAPVYYAYLKSELRI 333


>gi|322371729|ref|ZP_08046272.1| hypothetical protein ZOD2009_19548 [Haladaptatus paucihalophilus
           DX253]
 gi|320548614|gb|EFW90285.1| hypothetical protein ZOD2009_19548 [Haladaptatus paucihalophilus
           DX253]
          Length = 365

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/325 (10%), Positives = 80/325 (24%), Gaps = 22/325 (6%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
           +    F   ++  L + + S P+Y    ++ E  +   A    +  +    +    +   
Sbjct: 25  FVAYAFVGTLVLGLFVYYGSRPVYRRVTTRLESETLAAAATLFLLSLPALFLVGYTVAVG 84

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
                    + +       IP     +D+PG +   +               +       
Sbjct: 85  VRELSAFTGTGIETYYSRLIP---GSTDVPGVLSHPQRLVGSDLGTAWSDFTTAAKSVGI 141

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
               +          F                   D         ++  +L         
Sbjct: 142 ISRSLLTLFLSISFAFFALRDDDRLAAWFRGEMGED--------SAVVAYLTAVDEDLAI 193

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
                V+    +G+    +  G     A      P      ++T +   +P         
Sbjct: 194 VYFGNVLTVLLVGVAATVLYNG-FAAIAPGAVSFPIPTVFALLTGLATFVPIVVGKLVYV 252

Query: 265 VSIYLLIKGN--------IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
                 +            F A    +   +   +    +RP++ G           F  
Sbjct: 253 PLTLYFVWQALRVNTRLLWFPAVFFVVSLLLLDLLPQTVVRPYISGRTT--HTGLVMFAY 310

Query: 317 VGGVRTMGLLGLFIGPVLMALIAVI 341
           + G    G  G+F+GP+++  +   
Sbjct: 311 ILGGVLFGWYGIFLGPLVLVFVVQF 335


>gi|297521075|ref|ZP_06939461.1| inner membrane protein YhhT [Escherichia coli OP50]
          Length = 101

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 31/75 (41%)

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I +L+   ++    +     +   ++   L P ++G  + +  +  F  L+     +G 
Sbjct: 1   MIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGP 60

Query: 326 LGLFIGPVLMALIAV 340
           +G+ +   L ++  +
Sbjct: 61  VGMLLSVPLTSVCKI 75


>gi|256254731|ref|ZP_05460267.1| hypothetical protein BcetB_10630 [Brucella ceti B1/94]
 gi|261221911|ref|ZP_05936192.1| permease [Brucella ceti B1/94]
 gi|260920495|gb|EEX87148.1| permease [Brucella ceti B1/94]
          Length = 186

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 46/152 (30%), Gaps = 9/152 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            Q       M   ++ L        P ++ + + +   P+      K   S    +++  
Sbjct: 44  RQAGFWLGAMAFFVLFLVVFSSVLLPFVAGMALAYFLDPVADRLE-KVGLSRLAASIVIL 102

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  + + I+ L+ +      ++ + +S +         +             SE   K++
Sbjct: 103 LIFLMILIIGLMIVVPILATQLADFISNLPGYITQLQSLL--------ANRDSEWLKKYI 154

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
               ++   + + L   G  F+          
Sbjct: 155 GIDSTVIQQNLSSLLQQGAGFLSTLLQSLWNS 186


>gi|218515641|ref|ZP_03512481.1| hypothetical protein Retl8_19092 [Rhizobium etli 8C-3]
          Length = 132

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 41/102 (40%)

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
                  +  +    P       I             +F   AI + I+D  L+P L+  
Sbjct: 3   PLTFIVFVLCLMQLGPALVLLPVILWAWFSWPTPIALVFTVVAIPIMIIDNILKPILMAR 62

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +  P      G++GG  + GLLGLF+GPV++++   + +  
Sbjct: 63  GLSTPMPVILIGVIGGTLSQGLLGLFLGPVVLSVFYELLRAW 104


>gi|239814471|ref|YP_002943381.1| hypothetical protein Vapar_1464 [Variovorax paradoxus S110]
 gi|239801048|gb|ACS18115.1| conserved hypothetical protein [Variovorax paradoxus S110]
          Length = 354

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/343 (11%), Positives = 99/343 (28%), Gaps = 15/343 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF----ISKKEES 58
           +     + ++    + +    L  +     P L  + IGF +   ++      +++ +  
Sbjct: 12  KPQPASRNVVLASYLLMPAALLLVMWQHLLPGLLCVCIGFLATRWFTRLIVGGLARLKLP 71

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                V A V  + L ++  + L   G+ + +E +       +  +              
Sbjct: 72  FERADVPARVLAVTLVLLAPIALISLGLSQAREYILDAPDQYRELLD--------YTART 123

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             EL  K               ++    +++   A    +    +   ++F  + L    
Sbjct: 124 VLELRLKLPPEIAVYLPEGAAEVQRVVANYLRAQAGSLALAGRAWLGGLLFAYVGLIVGG 183

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG- 237
               + S                       +++ + F       +   + L     L G 
Sbjct: 184 LAAIAPSPLQRRPLAAQLHRRIAIFGEAFGQIVAAQFWIAAFNTLLTAIFLLFLMPLWGP 243

Query: 238 -VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
            +P   AL  +T +  ++P    +   +V   + +  +   A     +  I        +
Sbjct: 244 HLPYTPALITLTFVAGLVPIVGNLVCNSVITLVALSVSPVTALACLAFLIIIHKAE-YVI 302

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              +VG   ++        +       G  GL   P+  A + 
Sbjct: 303 NAKVVGSRTQMRVWELLAVMFVAEAVFGPAGLVAAPLFYAYLK 345


>gi|328784352|ref|XP_001121319.2| PREDICTED: transmembrane protein C9orf5-like [Apis mellifera]
          Length = 872

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/283 (10%), Positives = 73/283 (25%), Gaps = 6/283 (2%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + + Y      KE   K  L   +   +  ++ +         +     +  +    +  
Sbjct: 590 VTVAYSVWESFKESFGKTPLQLFNMTGIQNFIKE--NIGIFMSVLDSIWNIVKGNMSVIL 647

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           T         +    + F  +            +               + S        
Sbjct: 648 TIFTELFYIILMSGTAVFNFVLSMVVFFTTLFYLLSSSEKTYKPIELTTIFSPISCHSTL 707

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
             +  +  + + +   F     +A   G+     + L  V           I+  +P   
Sbjct: 708 QIEGFAVALQEAVIGVFTATFKLACFFGMWTWFIHNLFQVKIIYLPSTFATILGAVPFLD 767

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLV 317
                  +   L          + +   +  F+    +                T   + 
Sbjct: 768 AYFACIPATIELWFNRGPM---IAILFFMFHFLPCNIVVTEFYKEIKGGGHPYLTGLSIA 824

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
           GG+  +G+ G+  GP+L+  I V    S   +    E++ S +
Sbjct: 825 GGIFCLGVEGVIFGPLLLCCIMVAINLSRRYLHSPSEEVISTY 867


>gi|221065682|ref|ZP_03541787.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gi|220710705|gb|EED66073.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 352

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 91/342 (26%), Gaps = 15/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVL---SALIIGFTSWPIYSSFISKKEESS 59
           +   +P+ I+   I+    + L   +G    +L      ++      + S    +    +
Sbjct: 12  QPGASPKVILASYILMGAALLLVMHQGILPGLLCVCVGFMLTRALSRLLSRLSPRAFARN 71

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                    +   + + PL  L      + +  +++     +  +               
Sbjct: 72  QLPHWAQVAATTVVILAPLALLSGAL-SQTRTYITEAPAQYKELLDYL--------AATV 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            EL  K  S            +++    ++   A         +   +++  + L     
Sbjct: 123 LELREKLPSDIADQLPDGAQEIQSKLAGYLAAKAGVLATAGRAWLTGLLYAYVGLIIGAL 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL--VLGSAYWLAG 237
                                   +    +++ + F       +   +  +     W   
Sbjct: 183 AAVRPIATRHPPLVQALQQRIGHFALAFKQIVAAQFWIAAFNTLLTSIFLLAILPIWKLQ 242

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P   AL  +T I  +IP    +   AV   + +  +   A     +  +        + 
Sbjct: 243 LPYTPALITLTFIAGLIPIVGNLLCNAVLTLVGLSVSPVAAAACLGFLILIHKAE-YVIN 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             +VG    +        +       G  GL   P+  A + 
Sbjct: 302 AKVVGTRTHMGVWELLAVMFVAESVFGPAGLVAAPLFYAYLK 343


>gi|309785799|ref|ZP_07680430.1| UPF0118 inner membrane yhhT domain protein [Shigella dysenteriae
           1617]
 gi|308926919|gb|EFP72395.1| UPF0118 inner membrane yhhT domain protein [Shigella dysenteriae
           1617]
          Length = 101

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/75 (13%), Positives = 31/75 (41%)

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            I +L+   ++    +     +   ++   L P ++G  + +  +  F  L+     +G 
Sbjct: 1   MIQVLLFNGVYECILVGALFLVVHMVIGNILEPRMMGHRLGMSTMVVFLSLLIWGWLLGP 60

Query: 326 LGLFIGPVLMALIAV 340
           +G+ +   L ++  +
Sbjct: 61  VGMLLSVPLTSVCKI 75


>gi|297196910|ref|ZP_06914307.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
 gi|197715962|gb|EDY59996.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
          Length = 132

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/58 (17%), Positives = 20/58 (34%)

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L+P +    +++        L  G    G+LG+ +   L A    +  E      +
Sbjct: 13  NVLQPVIRSRTVQMRPAAILPALTAGASIAGILGMLLSVPLTAAAFGVLSELRSRYGD 70


>gi|226157624|gb|ACO37466.1| MIP09412p [Drosophila melanogaster]
          Length = 220

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 2/157 (1%)

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           KI+  +   I    + M   +   GL     + + G         + A++A  P      
Sbjct: 7   KIADALENSITVVLVSMFRCSTFTGLFTWLVHTVFGARIVFLPSALAAMLAAAPFLGSYW 66

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
               +   L          L L+  +  F V  +    +               + GG+ 
Sbjct: 67  CAVPAFLELWLAQDRFYAGLILF--LLQFFVPSSFETAIYADLKGGHPYLNGLAIAGGMY 124

Query: 322 TMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
            +G  G   GP+++     +++ + +A++ ++E  +S
Sbjct: 125 WIGWQGAIFGPLMLCFFIGLFEVATLAMRSHQEPRNS 161


>gi|48428751|gb|AAT42400.1| putative permease [Collimonas fungivorans Ter331]
          Length = 375

 Score = 55.4 bits (132), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/339 (10%), Positives = 94/339 (27%), Gaps = 15/339 (4%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           P+  +   ++ +  + L         +L+ L++      +      +         +I+ 
Sbjct: 46  PRFRLAAWLVALTGLFLVMTLHMLTALLAGLLVYELVRTLTPLVQRRLTSQR--AHLISV 103

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           V +  + I  L                ++ +     + V                  ++L
Sbjct: 104 VFLSAIIIGALTLAIVGLAAFFHGGPDRIQVLQGKLMVVVDQART-----QLPAWLQQYL 158

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                      +    +    +         +F+   + ++   +           +   
Sbjct: 159 PDDIDDIREIISDWLQSHRGEVQLAGKEAVQVFVHVLVGMVLGAMVALNAAHPMPLLQPL 218

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
              L         + ++    +V+ +      +      + L     L G+   +   +I
Sbjct: 219 AAELLG-----RAQLLADAFRRVVFAQVKISLLNTTLTAIFLLVVLRLGGIHLPLTKTMI 273

Query: 248 --TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
             T +  ++P    +    + + + +  +I+ A    ++  +   +    L   +VG  I
Sbjct: 274 VVTFLAGLLPVIGNLISNTLIVLVALSVSIYVALAALVFLIVIHKLE-YFLNARIVGSQI 332

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                     +V      GL GL   P+  A I     E
Sbjct: 333 NARSWELLLVMVLTEAAFGLPGLVAAPIYYAYIKSELHE 371


>gi|167957255|ref|ZP_02544329.1| hypothetical protein cdiviTM7_01202 [candidate division TM7
           single-cell isolate TM7c]
          Length = 169

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 44/123 (35%)

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
               ++      A     + +  I  ++++IP         +   +L+  ++  A    +
Sbjct: 20  IFVAIIPVFIQGAPGNLALPVAAIAFLLSLIPMFGATIAGVLITLMLLLSSVPAAVTFVI 79

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +  +   I +  + P +    I+L  L     +  G    GL+G  I   +     ++ +
Sbjct: 80  YFVVYQQIENNFISPVIQAKTIQLSALVVLLSVTLGTYIFGLIGGLISIPIAGWAKILLE 139

Query: 344 ESI 346
           + +
Sbjct: 140 DYL 142


>gi|193077965|gb|ABO12879.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
          Length = 338

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 98/337 (29%), Gaps = 9/337 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +++ N Q ++   I+  I +         A   +  +I      + S      +     +
Sbjct: 2   QSLSNRQSLIASYILMGIFLLSVIPLHLLASFFAGFLIYEIIISLSSIVERYIDGQRARI 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   +S++ + ++          +        +   N         L    G      +
Sbjct: 62  FISILLSIITISLIAFFITSLISFVVYDLKGVGLHSINGKVDQTLLHLQAEIGKYLPGYI 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +    +  + T       + AS   +  L   +  + + I +        
Sbjct: 122 PDSVTELKDEIFAFMKDNVTT------LKNASSDILHNLVTMVMGLIIGILVAIHGFHRR 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      SL              +V   I+ + +   +  +   ++L    W   +P   
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFRNVVFAQIKISAINTLLFILFAFVLLPI--WGVHLPFAK 233

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T +  +IP    +    ++    +  ++  A    L+  +   +    +   ++G
Sbjct: 234 TLTILTFMFGLIPILGNLISNTLTFIAALTISLGLAGVALLYLVLVHKLE-YFINAKIIG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             I          ++      GL GL   P+  A + 
Sbjct: 293 HKINANAWEILLAMLIFESIFGLSGLIAAPIFYAYLK 329


>gi|169795160|ref|YP_001712953.1| hypothetical protein ABAYE1015 [Acinetobacter baumannii AYE]
 gi|213158174|ref|YP_002320225.1| hypothetical protein AB57_2891 [Acinetobacter baumannii AB0057]
 gi|215482710|ref|YP_002324908.1| hypothetical protein ABBFA_000996 [Acinetobacter baumannii
           AB307-0294]
 gi|239501125|ref|ZP_04660435.1| hypothetical protein AbauAB_02322 [Acinetobacter baumannii AB900]
 gi|260556642|ref|ZP_05828860.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|294840140|ref|ZP_06784823.1| hypothetical protein A60131_19516 [Acinetobacter sp. 6013113]
 gi|294840604|ref|ZP_06785287.1| hypothetical protein A6014_02010 [Acinetobacter sp. 6014059]
 gi|294860704|ref|ZP_06798473.1| hypothetical protein A6013_19079 [Acinetobacter sp. 6013150]
 gi|169148087|emb|CAM85950.1| conserved hypothetical protein; putative membrane protein
           [Acinetobacter baumannii AYE]
 gi|213057334|gb|ACJ42236.1| hypothetical protein AB57_2891 [Acinetobacter baumannii AB0057]
 gi|213987735|gb|ACJ58034.1| hypothetical protein ABBFA_000996 [Acinetobacter baumannii
           AB307-0294]
 gi|260409901|gb|EEX03201.1| permease [Acinetobacter baumannii ATCC 19606]
 gi|322508970|gb|ADX04424.1| permease [Acinetobacter baumannii 1656-2]
 gi|323518955|gb|ADX93336.1| hypothetical protein ABTW07_2913 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 338

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/337 (10%), Positives = 98/337 (29%), Gaps = 9/337 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +++ N Q ++   I+  I +         A   +  +I      + S      +     +
Sbjct: 2   QSLSNRQSLIASYILMGIFLLSVIPLHLLASFFAGFLIYEIIISLSSIVERYIDGQRARI 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   +S++ + ++          +        +   N         L    G      +
Sbjct: 62  FISILLSIITISLLAFFITSLISFVVYDLKGVGLHSINGKVDQTLLHLQAEIGKYLPGYI 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +    +  + T       + AS   +  L   +  + + I +        
Sbjct: 122 PDSVTELKDEIFAFMKDNVTT------LKNASSDILHNLVTMVMGLIIGILVAIHGFHRR 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      SL              +V   I+ + +   +  +   ++L    W   +P   
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFRNVVFAQIKISAINTLLFILFAFVLLPI--WGVHLPFAK 233

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T +  +IP    +    ++    +  ++  A    L+  +   +    +   ++G
Sbjct: 234 TLTILTFMFGLIPILGNLISNTLTFIAALTISLGLAGVALLYLVLVHKLE-YFINAKIIG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             I          ++      GL GL   P+  A + 
Sbjct: 293 HKINANAWEILLAMLIFESIFGLSGLIAAPIFYAYLK 329


>gi|67924622|ref|ZP_00518034.1| hypothetical protein CwatDRAFT_0925 [Crocosphaera watsonii WH 8501]
 gi|67853521|gb|EAM48868.1| hypothetical protein CwatDRAFT_0925 [Crocosphaera watsonii WH 8501]
          Length = 136

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%)

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P  +   V   +M ++P             +L   N + A  + +   I   I D  + 
Sbjct: 1   IPFSLLFAVFIGVMEILPFIGATLGIGTVTIILTFINWWLAIQVLIISIIIQQIKDNLIA 60

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           P ++G    LP +  F  L+ G +  GLLG+ +   L  +I  + + 
Sbjct: 61  PRIMGNLTGLPPVIIFIALLLGAKIGGLLGVILAIPLTGVIKGVTEI 107


>gi|293609769|ref|ZP_06692071.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828221|gb|EFF86584.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 338

 Score = 55.0 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 97/342 (28%), Gaps = 9/342 (2%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + + N Q ++   I+  I +         A   +  +I      + S      +     +
Sbjct: 2   QNLNNRQSLIASYILMGIFLLSVIPLHLLASFFAGFLIYEIIISLSSVVERYIDGQRARI 61

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +   +S++ + ++          +        +   N         L           +
Sbjct: 62  FISILLSIITISLIGFFITSLISFVLYDLKGVGLHSINSKVDQTLLHLQAEITKYLPGYI 121

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     +    +  + T       +  S   +      +  + + I +        
Sbjct: 122 PDSVTDLKDEIFAFMKDNVTT------LKNTSSDILHNFVTMVMGLIIGILVAIHGFHRR 175

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +      SL              +V   I+ + +   +  +   ++L    W   +P   
Sbjct: 176 TPQPVFKSLLIQRIQKLSISFKNVVFAQIKISAINTLLFILFAFILLPL--WGVHLPFAK 233

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T +  +IP    +    ++    +  ++  A    L+  +   +    +   ++G
Sbjct: 234 TLTILTFMFGLIPILGNLLSNTLTFIAALTISLGLAGAALLYLVLVHKLE-YFINAKIIG 292

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             I          ++      GL GL   P+  A + +  K+
Sbjct: 293 HKINANAWEILLAMLVFESIFGLGGLIAAPIFYAYLKLELKD 334


>gi|213581538|ref|ZP_03363364.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. E98-0664]
          Length = 159

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/151 (10%), Positives = 48/151 (31%), Gaps = 1/151 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            A I  +  + + ++    +      +   L+  +             L      +  + 
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAG 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
           +      + ++  +     +    +  +   
Sbjct: 129 IIDAMAENMRTRMLNMGDSVVKYSLASLVGL 159


>gi|206895454|ref|YP_002247113.1| hypothetical protein COPRO5265_0766 [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738071|gb|ACI17149.1| hypothetical protein COPRO5265_0766 [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 341

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/335 (9%), Positives = 100/335 (29%), Gaps = 17/335 (5%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
               ++ F   + +  L   +  ++    + F  + +  +     +    F A++  ++ 
Sbjct: 15  AAFLLMAFAFYLVVRNLSTIYGWIVFLAWLTFAMY-VVEAAARLFKVQKRFAALVGVITA 73

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHP 130
           + L I   + +FY     +  L   +     +   +   + +       ++         
Sbjct: 74  ILLLIGLGISIFYLIQSIIPPLTKSIENLVAYLPKLQETVGEW------AQRSDVLTRVL 127

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
             +    ++ +    +  +     RF          I   ++           +    D 
Sbjct: 128 DEISSELQSLVGAETVKNVLLTVGRFVTSSGGSLFQITLAVLVSGLLIPYKDKLVNFADR 187

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA--GVPSHVALGVIT 248
                         + +  ++    L   +     G+VL     +        + +  + 
Sbjct: 188 KLP-------AAKFKQLDVMLGQYALQRLVSGFALGVVLFIGNIIILRNGGMALGIASLA 240

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL-FIVDKTLRPFLVGGPIKL 307
            ++  IP   P     ++  +++  +    + L           V++ +   +      +
Sbjct: 241 FVLDFIPYVGPFFAFIINAIVVLVVSPKWLSLLLSLIIFLTGQGVEQLVAATMASVQFSI 300

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           PF+     ++ G    G+ GL +G  + A +  +W
Sbjct: 301 PFIVAIALVIFGGVVAGVPGLILGVPIGAYLINLW 335


>gi|325520941|gb|EGC99910.1| hypothetical protein B1M_34229 [Burkholderia sp. TJI49]
          Length = 305

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 89/308 (28%), Gaps = 16/308 (5%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           +L+ L++      I  +              +A V +    +  L  L    +   +  V
Sbjct: 3   LLAGLLVYQLIHTIAPAIERHTTSMR--ARWVAVVLLAIAIVGGLTGLSIGIVEHFEHTV 60

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +       + +    +      W + L    +   ++   +                A
Sbjct: 61  PNLQSLLDQLMQIVEQ-TRARTPEWIANLLPVDVEQMKTKAAVLMHSHMDQLQQGGKNVA 119

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
             FG +     +  +  I               +              + +    +++ +
Sbjct: 120 RGFGHVLFGMIIGAMIAIGVEH----------GKARRPLSTALVTRVSRFADAFRRIVFA 169

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
                 I A   G+ L  A  +    +P    L ++T I+ ++P    +    + + + +
Sbjct: 170 QIKISAINAAFTGIYLLVALPIFHQRLPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSL 229

Query: 272 KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
             ++  A     +  I   +    L   ++GG I+         ++      GL G+   
Sbjct: 230 SVSMGTAIASLAFLVIIHKLE-YFLNAKIIGGQIESRAWELLLAMLIMEAAFGLPGVIAA 288

Query: 332 PVLMALIA 339
           P+  A + 
Sbjct: 289 PIFYAYLK 296


>gi|218506533|ref|ZP_03504411.1| putative permease protein [Rhizobium etli Brasil 5]
          Length = 81

 Score = 54.6 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 44/52 (84%)

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
            LVGGPIKLPFLPTFFGLVGGV+TMG LGLFIGPVLMALI  IW+E I   +
Sbjct: 1   KLVGGPIKLPFLPTFFGLVGGVKTMGFLGLFIGPVLMALIVAIWREWIHEAR 52


>gi|312969714|ref|ZP_07783897.1| inner membrane domain protein [Escherichia coli 1827-70]
 gi|310337999|gb|EFQ03088.1| inner membrane domain protein [Escherichia coli 1827-70]
          Length = 168

 Score = 54.6 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 46/143 (32%), Gaps = 1/143 (0%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  +   +WP+            +
Sbjct: 5   RQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTVVIATWPVLLRLQKIMFGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ +FI+P+  L    +     L+  +   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISSGDMTLPDLAWLNTIPVIGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKT 143
             W   L             +  
Sbjct: 125 AGWHNLLDMGGRRSWRKSALILA 147


>gi|198451544|ref|XP_001358412.2| GA15434 [Drosophila pseudoobscura pseudoobscura]
 gi|198131535|gb|EAL27551.2| GA15434 [Drosophila pseudoobscura pseudoobscura]
          Length = 819

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 5/270 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 545 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNLSMIMGVTGEILS 604

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 605 LVLSGGQACIEFILDMIVFFTALFYLLSSSKEKYAPLQITKYLGYSSSGSKIADSMENSI 664

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +I  GL     + + G         + AI+A  P          +   L 
Sbjct: 665 TVVLVSMFKCSIFTGLFTWLVHTVFGARIVFLPSALAAILAAAPFLGSYWCAVPAFLELW 724

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 725 LAQDCFYTGLLLFLLQFFVPSTFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 781

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GP+++     I++ + +A++ N++    +
Sbjct: 782 LGPLMLCFFIGIFEVAALAMRSNQDPPRRS 811


>gi|134093359|ref|YP_001098434.1| putative permease [Herminiimonas arsenicoxydans]
 gi|133737262|emb|CAL60305.1| putative permease [Herminiimonas arsenicoxydans]
          Length = 337

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 95/326 (29%), Gaps = 15/326 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++    + L   +G  A + S L++      +      K         V+A   + CL +
Sbjct: 16  VLMGAALLLVMHQGLLAALFSGLLVYSLVQLLAPKLGKKLVGRR--AQVVAVALLSCLIV 73

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             L    +  +  ++    ++ +  Q    +            A+ +     +    L  
Sbjct: 74  AALTVGIWGAIRFLQSDAGRISVLLQKMADILEASRSQIPAWMAAYIPVDADALRDMLTG 133

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                              R         L+ I + + +        + +          
Sbjct: 134 WLRAHALEA----------RSMGNEAGRILAHILIGMIIGAMAALYDTTTTNNYKPLAAA 183

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAM 253
                  +      ++ +      I A+  G+ L     LAG+   +   + V+T ++ +
Sbjct: 184 LHVRVVVLHEAFRNIVFAQVRIAAINAVLTGIYLIVILPLAGIELPLRKTMVVVTFLVGL 243

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +    + + + +  ++  A    L+      +    L   ++G  I        
Sbjct: 244 LPVIGNLISNTILVIIGLSHSLHTALGSLLFLMTIHKLE-YFLNAKIIGHHIDARTWELL 302

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++      G+ G+   PV  A I 
Sbjct: 303 TAMLVMESIFGIPGVVAAPVFYAYIK 328


>gi|322832640|ref|YP_004212667.1| hypothetical protein Rahaq_1923 [Rahnella sp. Y9602]
 gi|321167841|gb|ADW73540.1| hypothetical protein Rahaq_1923 [Rahnella sp. Y9602]
          Length = 336

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 96/344 (27%), Gaps = 15/344 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + M + Q     +++ +  + L       A  ++  ++      +   F           
Sbjct: 2   QIMRSNQIRWLSVLIVMGGLLLILPLHLLACFIAGFLVFELINALTPYFQKIISGER--A 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L I  L          + E +   V  N     +          +    L
Sbjct: 60  RWVVVAIIATLVISCLTLAIAGIADFLMEDMRNPVAFNAMVSHLLTDAQSRLSPVLLHYL 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   +S        +               G       L++I  +I          
Sbjct: 120 PANIEELQRSFLQWLREHIV---------MIQAVGKNAAHVFLTMIIGMILGAIISLQQP 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PS 240
               +L++  +         +      V+ + F    I  +  G+ L     L G+  P 
Sbjct: 171 R-KGELNAPLKKELLQRMHLLGEAFRNVVFAQFQISLINTVLSGIFLFGILPLFGIHLPL 229

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+T +  ++P    +    +   + +  +++    +  +  I   +    L   +
Sbjct: 230 AKTLVVVTFVCGLLPVIGNLISNTLIFIVGLSLSLWVGALVLAYLIIIHKVE-YFLNARI 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  IK         ++      G+ G+   P+  A +    KE
Sbjct: 289 VGSRIKAKSWEVLLAMLIFEAAFGIPGVVAAPIYYAYLKSELKE 332


>gi|121603275|ref|YP_980604.1| hypothetical protein Pnap_0360 [Polaromonas naphthalenivorans CJ2]
 gi|120592244|gb|ABM35683.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]
          Length = 356

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 83/322 (25%), Gaps = 17/322 (5%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +   L+ +  L     P L A+ +G+    + +     +         +A   V+ L ++
Sbjct: 38  VLAFLLCVGTLVYGLLPGLLAVCLGYLL--VVALAGEGRIRGPRLSPALAAAVVVLLPLI 95

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKIL 136
            L  L          +V +      +       +        A  L  +       L   
Sbjct: 96  GLGVLLANAKGMAFGVVGQYQALLHYLASTVLEIRQKLPADLAIHLPDELTEAQVWL--- 152

Query: 137 SETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
                      ++   A              +   + L        +      +      
Sbjct: 153 ---------AAYLKSKAQALTGAGTAGLHGFLLAYVGLVVGALIKGTFRMPTSAPLRFEI 203

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMI 254
                       +++ + F    + A    + L +   L GV  P    L  +T    +I
Sbjct: 204 RMRAGHFIEAFRQIVVAQFWIAAVNAFFTAVFLLAVLPLFGVHMPYIAELVTLTFFAGLI 263

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFF 314
           P    +   +V   + +  +        ++  +        +   ++G            
Sbjct: 264 PIVGNLICNSVITLVGVSVSPAVGLACLVFLILIHKTE-YIINAKILGKQTNTAAWELLA 322

Query: 315 GLVGGVRTMGLLGLFIGPVLMA 336
            +  G    GL GL   P+  A
Sbjct: 323 AMFVGEAVFGLPGLVAAPLYYA 344


>gi|164686066|ref|ZP_01946057.2| permease protein PerM [Coxiella burnetii 'MSU Goat Q177']
 gi|165918466|ref|ZP_02218552.1| permease protein PerM [Coxiella burnetii RSA 334]
 gi|212219063|ref|YP_002305851.1| permease [Coxiella burnetii CbuK_Q154]
 gi|164601622|gb|EAX33253.2| permease protein PerM [Coxiella burnetii 'MSU Goat Q177']
 gi|165917834|gb|EDR36438.1| permease protein PerM [Coxiella burnetii RSA 334]
 gi|212013325|gb|ACJ20705.1| permease [Coxiella burnetii CbuK_Q154]
          Length = 86

 Score = 54.2 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 20/66 (30%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L P L    + L  +     ++      G  G+F    L  L+ ++      A  
Sbjct: 20  LDGNLLVPLLFSEAMDLHPIVIILSILVFGGIWGFWGIFFAIPLATLVKMVLNAWPKARI 79

Query: 351 ENKEKI 356
              +  
Sbjct: 80  SQNDTP 85


>gi|330720632|gb|EGG98888.1| Putative permease PerM ( YfgO) [gamma proteobacterium IMCC2047]
          Length = 96

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 26/89 (29%)

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGG 319
           ++     I     G       L +   I   +    L PFL    + L  +     ++  
Sbjct: 1   MTVPVALIGAFQWGWTSEFFYLMMAYGIIQALDGNVLVPFLFSEVVNLHPVAIIVAVLFF 60

Query: 320 VRTMGLLGLFIGPVLMALIAVIWKESIMA 348
               GL G+F    L  LI  +       
Sbjct: 61  GSIWGLWGVFFAIPLATLIQAVLNAWPRG 89


>gi|323693345|ref|ZP_08107561.1| hypothetical protein HMPREF9475_02424 [Clostridium symbiosum
           WAL-14673]
 gi|323502589|gb|EGB18435.1| hypothetical protein HMPREF9475_02424 [Clostridium symbiosum
           WAL-14673]
          Length = 122

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 46/114 (40%)

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + +  AI   +P           I + +    +      L   I + I+   L P ++G 
Sbjct: 1   MALGIAIFDALPVFGTGGIMIPWIIIELLSGNYALAGGLLILYIIITIMRNILEPKILGS 60

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
            + +  +     ++ G R +G+LG+   P+   ++ V+     + + +N  K++
Sbjct: 61  QLGINPIVVLLAVLIGGRLLGVLGMIFFPITAYVLTVLHDAGKIKLYKNPPKLN 114


>gi|218680915|ref|ZP_03528812.1| hypothetical protein RetlC8_19536 [Rhizobium etli CIAT 894]
          Length = 140

 Score = 53.8 bits (128), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/104 (15%), Positives = 37/104 (35%)

Query: 11  IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
           +   +I      S   +  F   V+ + I+    +P++              A I  V+ 
Sbjct: 29  VRLGIIALFAYWSFRLVAPFALIVIWSAILAIAMFPLHRMLARALGNRPVLSATIIVVAC 88

Query: 71  MCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           + L I PL  +        + L++++   +      P+ + + P
Sbjct: 89  LLLVIAPLSLVAVNFADAAQALIARLRTDSFALPSAPQGIREWP 132


>gi|195146082|ref|XP_002014019.1| GL24454 [Drosophila persimilis]
 gi|194102962|gb|EDW25005.1| GL24454 [Drosophila persimilis]
          Length = 819

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 85/270 (31%), Gaps = 5/270 (1%)

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L S       +   V      I G   ++      ++      I +   +       I  
Sbjct: 545 LKSTFGEIVDNPELVLVAKQGIIGWAQSNTQTILEVAESLWHIIRTNLSMIMGVTGEILS 604

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                G   +++ L +I    ALF+           L       + +   KI+  +   I
Sbjct: 605 LVLSGGQACIEFILDMIVFFTALFYLLSSSKEKYAPLQITKYLGYSSSGSKIADSMENSI 664

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLI 271
               + M   +I  GL     + + G         + AI+A  P          +   L 
Sbjct: 665 TVVLVSMFKCSIFTGLFTWLVHTVFGARIVFLPSALAAILAAAPFLGSYWCAVPAFLELW 724

Query: 272 --KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
             +   +    LFL         +  +   L GG            + GG+  +G  G  
Sbjct: 725 LAQDCFYTGLLLFLLQFFVPSTFETAIYADLKGGG---HPYLNGLAIAGGMYWIGWQGAI 781

Query: 330 IGPVLMALIAVIWKESIMAIKENKEKISSN 359
           +GP+++     I++ + +A++ N++    +
Sbjct: 782 LGPLMLCFFIGIFEVAALAMRSNQDAPRRS 811


>gi|312797332|ref|YP_004030254.1| hypothetical protein RBRH_02124 [Burkholderia rhizoxinica HKI 454]
 gi|312169107|emb|CBW76110.1| Hypothetical membrane spanning protein [Burkholderia rhizoxinica
           HKI 454]
          Length = 376

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 79/292 (27%), Gaps = 16/292 (5%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                           A V V C  +     +       +++ V+ +    +  +     
Sbjct: 90  RLERHLSSQR--ARWFAVVFVACTVVAVFTGISLGIAQHLEKHVTSMQALFEQVMRFFDQ 147

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIF 169
                     + L +        + +L  +                   + L   L  I 
Sbjct: 148 ERARLPAWALTYLPSNAAEIESKITVLLHSHATQLQEGG-KTAMRGITHVLLGMILGAIV 206

Query: 170 MIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVL 229
            + A                +           + +    +++ +      + A   GL L
Sbjct: 207 AVGAQH----------HATRAPLSAALVTRVSRFADAFRRIVFAQIKISAVNAFFTGLYL 256

Query: 230 GSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
             A  L    +P    L + T ++ ++P    +    V + + +   I  A     +  +
Sbjct: 257 LVALPLFHSRLPLSKTLVIFTFVVGLLPVVGNLISNTVIVLISLASGIGVAISSLAFLVV 316

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              +    L   +VGG I+         ++      GLLG+   P+  A I 
Sbjct: 317 IHKLE-YFLNARIVGGEIEAKAWELLIAMLVMEAAFGLLGVIAAPIFYAYIK 367


>gi|324504037|gb|ADY41743.1| Transmembrane protein [Ascaris suum]
          Length = 771

 Score = 53.5 bits (127), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 91/247 (36%), Gaps = 17/247 (6%)

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
           ++   +  +     +++      +L    L ++    +      FG+  +++ + +I  +
Sbjct: 523 ELTEILQENIETVLNVARSVWSVVLMNISLFSSFFISLAGVVIGFGLDIVNFLIEMIAFL 582

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPA-----------YWKKISRIVPKVIRSTFLGMTI 220
            A+++           +  + + L  +             K IS  +   I   F+  T 
Sbjct: 583 TAVYYLLASSGDEWLPVKWISDALPKSSEGAADANSAFNVKHISTAIEDAISGVFVLSTK 642

Query: 221 IAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP--ISFTAVSIYLLIKGNIFNA 278
           +A+  GL     + L  +       ++ A+ A IP  AP  +    +    L++G    A
Sbjct: 643 MAVFYGLYTYFVHTLFDLNIVFLPSMLAALFAAIPIMAPYVVCAIGIFELYLVRGETAAA 702

Query: 279 TCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
              F+     +   D      L G         T   ++GG+  +GL G  IGP+++ L+
Sbjct: 703 ILFFILSVAPVTFADAAFYRQLRGS----HPYVTGLAIIGGMYWLGLQGAIIGPIILCLL 758

Query: 339 AVIWKES 345
            V++   
Sbjct: 759 LVLFHVY 765


>gi|319639488|ref|ZP_07994237.1| membrane protein [Neisseria mucosa C102]
 gi|317399254|gb|EFV79926.1| membrane protein [Neisseria mucosa C102]
          Length = 357

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/331 (14%), Positives = 103/331 (31%), Gaps = 9/331 (2%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTS----WPIYSSFISKKEESSTFLAVIATVSVMC 72
           + + L  L  L     P+L ++I+ +        +      +    +T L        + 
Sbjct: 19  ILMGLALLIVLHYHLLPLLLSVILTYIFITRTNGVILKLRRRVLPRNTRLHKSLNAHNIN 78

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L    L     + ++ M  L    ++   H   +   L+ I      S+     + +   
Sbjct: 79  LISTTLTLAIVFSIITMMSLGIYHLIHGGHVGFMLAKLAAILEDTKNSQDLPAAILNMLP 138

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS-- 190
             +          ID      +R     +   + I+  II           + +      
Sbjct: 139 NNMAEIKASAIKLIDEYRAALTRISKNSITSFVYILIGIIIGAMLSFHRLKMRKNRRKMP 198

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVIT 248
           L +               +V  +      I     GL L     L GV  P  + + ++ 
Sbjct: 199 LFKAELVHRIVNFETSFERVFLAQVKISLIDTFLTGLYLYLVLPLFGVELPFKMTVLIVA 258

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I+ +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+  
Sbjct: 259 FIVGLIPVAGNLISNTIIIILSLGASLYVALASLVFLVVIHKLE-YFLNAKIIGSEIESS 317

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  +V   R  G+ G+ + PV  A + 
Sbjct: 318 AWELLVAMVVFERIFGIGGIIVAPVYYAYLK 348


>gi|71891811|ref|YP_277540.1| transmembrane protein [Candidatus Blochmannia pennsylvanicus str.
           BPEN]
 gi|71795917|gb|AAZ40668.1| probable transmembrane protein [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 335

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/312 (10%), Positives = 86/312 (27%), Gaps = 16/312 (5%)

Query: 31  FAPVLSALIIGF-TSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             P   +  + +       S F      +    A +A + +               ++  
Sbjct: 28  LFPCFFSGFLTYEIIVSFASYFERFIGINRARGAAVAFIIIS------------ISIVIT 75

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             +++      +    +   +          +     L                N I+  
Sbjct: 76  IGIINCTNFFTEDINKITISIEINRIFSDFKKRLPDFLPSFLPNTTEELKDQIFNWIESN 135

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                  G  FL   ++++  ++          +     D+            +SR    
Sbjct: 136 LILIRNMGHTFLHGFIALLVGVVVGVLVSCSKSTKQHTHDTFFITQLSERIYNLSRAFRN 195

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAMIPGGAPISFTAVSI 267
           ++ +     ++  +   +++     L G  +P    L VIT I  M+P    +    +  
Sbjct: 196 IVFAQIKISSVNTLLTSIIIFVLLPLIGQSLPLGKTLTVITFIFGMLPIIGNLISNIMIT 255

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
              +  ++     + ++  +   +    L   ++G  I          ++      GL G
Sbjct: 256 IAALSISLSIGVMMLIYLILIHKLE-YFLNAEIIGNKINANPWELILSMLLLESIFGLEG 314

Query: 328 LFIGPVLMALIA 339
           L   P+  A + 
Sbjct: 315 LIAAPIFYAYLK 326


>gi|167950258|ref|ZP_02537332.1| predicted permease [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 65

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
            L   +   +V   + P  +G  + L  L  F  LV     +G +G+F+
Sbjct: 1   MLGYLLINNLVGNVIEPRFMGKGLGLSPLVVFVSLVFWGWVLGPVGMFL 49


>gi|224061256|ref|XP_002300393.1| predicted protein [Populus trichocarpa]
 gi|222847651|gb|EEE85198.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 85/273 (31%), Gaps = 8/273 (2%)

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E  E+ +++    +  I     L +   G        +      +             +
Sbjct: 388 QEWGEIYTELDAIFRELIFTREDLVEKAKGYAV--QGMEVSQRVFASSASVLGGGAKLML 445

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                  S    +F     S+IF  +  +    +   ++ Q+  +     PA   +   +
Sbjct: 446 SIGNSIISGAAEVFNFVSQSVIFFWVLYYLITSESGGVTNQVMGMLPIPKPARI-RCVEV 504

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K I    L    IA  +G +    + L  +       ++     + P   P+  T  +
Sbjct: 505 LDKAISGVLLATAEIAFFQGCLTWLLFRLYDIHFLYVSTILAIFSPLFPIFPPMFATIPA 564

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--G 324
              L+    +    L +  +I   ++       +           T   ++GG+      
Sbjct: 565 AVQLVMEGRY---ILAVSLSIIHIVLMDYGATEIQEDIPGYNEYLTGLSIIGGMTLFPSA 621

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
           + G  +GP++  ++  +    +  + E  +K S
Sbjct: 622 IEGAIMGPLITTVVIGLKDLYVEFVLEEPKKTS 654


>gi|297538411|ref|YP_003674180.1| putative permease [Methylotenera sp. 301]
 gi|297257758|gb|ADI29603.1| putative permease [Methylotenera sp. 301]
          Length = 344

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 80/291 (27%), Gaps = 13/291 (4%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           ++ S    + A   ++ + +  L       +   +     + +       +      I  
Sbjct: 61  KKPSNRSKLWAVGILVVIVVSLLALAGAGLVAFFRSDAGSLTVLLAKMAQIIEDSRKILP 120

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                 L +  ++  +       T         +       G I     + +I   I   
Sbjct: 121 SWIVEHLPSDAIAFKEQAAAWLRTHADE-----LQGVGKEAGRITAHVIIGMIIGGILAV 175

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
                  +      +L         +  S    +V+ +      I      + L     L
Sbjct: 176 REAVAMDNFKPFARALAG-----RGELFSDAFRRVVFAQLRIAAINTTFTAIYLAIVLPL 230

Query: 236 AGVPSHVA--LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            GV   +   +  IT ++ +IP    +    + + + +  ++  A     +  I      
Sbjct: 231 MGVHLPLVKTMIGITFVIGLIPVIGNLISNTMIVVVSLSQSLGVAIASLAYLIIIHKFE- 289

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             L   +VG  I+         ++      GL G+   P+  A I    + 
Sbjct: 290 YFLNARIVGSQIRANAWELLIAMLCMEAAFGLAGIVAAPIYYAYIKSELRA 340


>gi|170741948|ref|YP_001770603.1| putative permease [Methylobacterium sp. 4-46]
 gi|168196222|gb|ACA18169.1| putative permease [Methylobacterium sp. 4-46]
          Length = 351

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 70/280 (25%), Gaps = 13/280 (4%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             VI    +  + +  +     + +  +      + +  +    V               
Sbjct: 74  AKVIVVALLAGVIVAAVGAAILWLVGLLSGGSDNLSVLLRKMAEVIETARS-----RLPP 128

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                L    +    +           +                 ++   +         
Sbjct: 129 WLVGFLPEESTELKAAAATWLREHAGQVRAIGQDVWRALFHLVFGLVIGAMVAVSRETGL 188

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--P 239
                 L +L         + ++     V+ +      +      L L  A    G+  P
Sbjct: 189 DERPPLLHALT-----NRVRLLASAFRSVVFAQVRISALNTALTALYLLVAVPWLGIALP 243

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
               + VIT +  ++P    +    V + + +  +   A     +      +    +   
Sbjct: 244 FTKTMVVITFLAGLLPVVGNLISNTVIVLVSLSVSPALALGSLGFLVAIHKLE-YVVNAR 302

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           ++GG I+         ++      GL GL   P+  A + 
Sbjct: 303 VMGGQIRARAWELLAAMLVMESVFGLPGLVAAPIFYAYLK 342


>gi|222055293|ref|YP_002537655.1| hypothetical protein Geob_2200 [Geobacter sp. FRC-32]
 gi|221564582|gb|ACM20554.1| conserved hypothetical protein [Geobacter sp. FRC-32]
          Length = 329

 Score = 52.7 bits (125), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/338 (12%), Positives = 97/338 (28%), Gaps = 16/338 (4%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           Q       +  +   L  L+    P + A +  +              ++    A    +
Sbjct: 2   QRYTTISYLLAVSAVLLVLRFHLLPAVFAGLAVYVL---TLKLAGHLPKNMNRFAHKVAL 58

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V+ + ++  L      +         +       +     L          +   + L 
Sbjct: 59  GVVVICVITCLTSAGAAIWSFVGSSHGIAALLATVVDTLDSLRR-----TLPDSVAEVLP 113

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                       +  N +  I         +F    L ++   +A    + +       +
Sbjct: 114 TTIEGLNEQLVEILRNHVQKISVVGMEGIKVFAHILLGMVVGGMAAVHHFIEHEKSPPFI 173

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGV 246
            +L      +   K++    KV+ +      + +I   L L     L GV  P    L +
Sbjct: 174 GAL-----RSRLGKLATAFDKVVFAQVKISGLNSIFTALYLLVVLPLFGVHLPMASLLVL 228

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T  + M+P    +    V + + +  +        ++  +        +   +VG  ++
Sbjct: 229 LTFAVGMLPVVGNLISNTVIVVISLGVSPLVGIASLVFLVLIHKAE-YFMNARIVGHEVQ 287

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                    ++      G+ GL   PV+ A +    KE
Sbjct: 288 ATAWELLCAMLLLEAMFGVAGLVAAPVVYAWLKAEVKE 325


>gi|321461531|gb|EFX72562.1| hypothetical protein DAPPUDRAFT_308213 [Daphnia pulex]
          Length = 811

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 67/208 (32%), Gaps = 6/208 (2%)

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +       +     L       I       G   L++ ++ +  + AL++      S  +
Sbjct: 562 ILDSIWTILKGNLSLVFKSTTAILSVLMGGGTAILNFFVNGVVFLTALYYLLVASDSQYK 621

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +  +   L P     +   + + I +  +    +A   GL     + + GV   V    
Sbjct: 622 PI-QMVSFLSPGGGNTLGTAMEEAITTVCMASLKLAAFYGLWTWLIHTIFGVNFVVIPVA 680

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP 304
           + A++  +P          +   L   +     A  L  +      +VD +    + GG 
Sbjct: 681 LAALLGAVPFLGTYWAALPAALDLWLAQSRGVEALLLIFFQFAPTLLVDASFYAEIKGGG 740

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
                  T   + GG+  +G  G  IGP
Sbjct: 741 ---HPYLTGLAVAGGIFWLGFEGAIIGP 765


>gi|264679765|ref|YP_003279674.1| hypothetical protein CtCNB1_3632 [Comamonas testosteroni CNB-2]
 gi|299533941|ref|ZP_07047302.1| hypothetical protein CTS44_24073 [Comamonas testosteroni S44]
 gi|262210280|gb|ACY34378.1| conserved hypothetical protein [Comamonas testosteroni CNB-2]
 gi|298718068|gb|EFI59064.1| hypothetical protein CTS44_24073 [Comamonas testosteroni S44]
          Length = 352

 Score = 52.7 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/342 (10%), Positives = 92/342 (26%), Gaps = 15/342 (4%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFIS---KKEESS 59
           +   +P+ I+   I+    + L   +G    +L   +    +  +         +   S+
Sbjct: 12  QPGPSPKVILASYILMGAALLLVMHQGILPGLLCVCVGFMLTRSLSRLLSRANPRAFASN 71

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                   V+   + + PL  L      + +  +++     +  +               
Sbjct: 72  QLPRWAQVVATTIVILAPLALLSGAL-SQTRTYITEAPAQYKELLDYL--------AATV 122

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
            EL  K  S            +++    ++   A         +   +++  + L     
Sbjct: 123 LELREKLPSDIADQLPDGAQEIQSKLAGYLAAKAGVLATAGRAWLTGLLYAYVGLIIGAL 182

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL--VLGSAYWLAG 237
                                   +    +++ + F       +   +  +     W   
Sbjct: 183 AAVRPIATRHPPLVQALQQRIGHFALAFKQIVAAQFWIAAFNTLLTSVFLLAILPIWKLQ 242

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P   AL  +T I  +IP    +   AV   + +  +   A     +  +        + 
Sbjct: 243 LPYTPALITLTFIAGLIPIVGNLLCNAVLTLVGLSVSPIAAAACLGFLILIHKAE-YVIN 301

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             +VG    +        +       G  GL   P+  A + 
Sbjct: 302 AKVVGTRTHMGVWELLAVMFVAESVFGPAGLVAAPLFYAYLK 343


>gi|255524567|ref|ZP_05391521.1| permease [Clostridium carboxidivorans P7]
 gi|255511720|gb|EET88006.1| permease [Clostridium carboxidivorans P7]
          Length = 146

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%)

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + K + +   G  ++A+   +++   Y + G+P+ +   + T I+  IP         + 
Sbjct: 1   MDKALNAYVTGQLMVALSLAIMIYIGYKIIGMPNALIWALFTFILGFIPFIGFFISMIIP 60

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             + +   I+    L +       +  + + P ++   +K+  L   F +V  V   G +
Sbjct: 61  SIIAVSKGIYMIIKLSIVFITVQTLKGRVVVPLIMSSTLKIHPLTDIFLVVTAVSYGGPM 120

Query: 327 GLFIGPVLMALIAVIW 342
             FI   L A++ VI 
Sbjct: 121 AAFIIVPLYAMVKVIV 136


>gi|134288510|ref|YP_001110673.1| hypothetical protein Bcep1808_6984 [Burkholderia vietnamiensis G4]
 gi|134133160|gb|ABO59870.1| conserved hypothetical protein [Burkholderia vietnamiensis G4]
          Length = 341

 Score = 52.7 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/327 (13%), Positives = 94/327 (28%), Gaps = 15/327 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I     + +  L     P L A +I F    I+    S           +  V  + L +
Sbjct: 20  IAVAFALLVGALLLHLVPALFAGLITFAL--IHQLARSFGGLLPHARGKLVAVGFLALIV 77

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           +  L      ++ + +  + +    Q    +    +      + S L +      + +  
Sbjct: 78  IGALVGGSLAIISVLKADAGLSALFQKMASILENATRSMPAGFMSGLPSGAAEIREHVVN 137

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                    G+          G+      + ++   +                 SL    
Sbjct: 138 WLREHASEMGM-----VGKEAGVALAHVLIGVVIGAMVALHEATSTRRAGPLAASLL--- 189

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAM 253
             A   + +    KV+ +      I      L L      AGV  P    +  +T ++ +
Sbjct: 190 --ARINRFADSFRKVVFAQVQISLINTCLTALYLAVVLPAAGVHLPFTKTMIGLTFVLGL 247

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   A+ I + I  +   A     +  +   I    L   +VG  IK       
Sbjct: 248 LPVAGNLLSNAIIIVISISHSFNAAIASLAFLVVIHKIE-YFLNARIVGSQIKAAAWELL 306

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAV 340
             ++      G+ G+   P+  A +  
Sbjct: 307 LAMLVMESMFGVAGVAAAPIFYAYLKS 333


>gi|326432003|gb|EGD77573.1| hypothetical protein PTSG_08670 [Salpingoeca sp. ATCC 50818]
          Length = 595

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 75/258 (29%), Gaps = 11/258 (4%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           V    + GI       D   G +   L    +       +LS+          +    S 
Sbjct: 292 VDRVVELGIRQQGSAHDQAKGFFNDMLENIDVLQHMGTHLLSQISNPAQLAFNVMFRMSS 351

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
                  +   ++   I  + F      +   +  +           + R    VI + F
Sbjct: 352 AISAVSTFGSQLLVFGIFFYEFTAADDDLLSTIIHVLVPASRHTRNLVIRNCQMVISAAF 411

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNI 275
                +A    L       + G+        ++ ++ ++P   P+    V     I    
Sbjct: 412 FIPLSLASLHALTTLVMTTVLGIRFRFFATFLSFVVTLVPITDPLVVPIVWAVAPIIHVT 471

Query: 276 FNATCLFLWGAIELFIV----------DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             +T L       +F++             L    V        + T F ++ G    G+
Sbjct: 472 ITSTGLTSLVKAVVFLLVCVYTYSYANRLVLEQQRVQEVTG-NPVLTLFSVLLGCYAFGI 530

Query: 326 LGLFIGPVLMALIAVIWK 343
            G  +GP+ + L+ ++ +
Sbjct: 531 AGFILGPLALYLLMMVVR 548


>gi|242240660|ref|YP_002988841.1| hypothetical protein Dd703_3257 [Dickeya dadantii Ech703]
 gi|242132717|gb|ACS87019.1| conserved hypothetical protein [Dickeya dadantii Ech703]
          Length = 336

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/342 (9%), Positives = 97/342 (28%), Gaps = 11/342 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   Q  +   I  +  + L       A  ++  ++      +   F           
Sbjct: 2   QLLNLKQARLLSFIFIMGGLLLLIELRLLACFIAGFLVYEIVNLLTPYFQKVISGKR--A 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            +     +  + +  L  +F   +  + + +    + N     +   +           L
Sbjct: 60  RLAVVAVISTIVVSLLSLIFGALVGLLMQEMKDTSVFNARIAFILDDVQTQLMTYLPGYL 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                       +  +  +    +  + +      +  L   +    + +       D  
Sbjct: 120 PVSVEELQHEFVMWLQKHVA--MLQNMGKDFLHGFVTMLIGMILGAIISLYSIEPSVDKP 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L      L  ++   +   V   + +T L          ++     +   +P   
Sbjct: 178 LLKTELMRRVALLSASFRNIVFAQVKISLVNTILSSL------FILGILPTFEIHLPFAK 231

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T I  ++P    +   +V     +  ++  A    ++  +   +    L   +VG
Sbjct: 232 TLVILTFIFGLLPVIGNLISNSVVFIAALSISLPMALIALVYLMLIHKLE-YFLNAQIVG 290

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IK         ++      G+ G+   P+  A +    ++
Sbjct: 291 TRIKAHAWEILLAMLVFEAAFGISGVIAAPIYYAYLKSELRD 332


>gi|307129481|ref|YP_003881497.1| membrane protein [Dickeya dadantii 3937]
 gi|306527010|gb|ADM96940.1| membrane protein, putative [Dickeya dadantii 3937]
          Length = 336

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/344 (13%), Positives = 107/344 (31%), Gaps = 18/344 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESST 60
           +LN +        FI+   L  ++        A  + +       P +   IS K     
Sbjct: 3   LLNLKQARLLSFFFIMGGLLLLIELRLLACFIAGFLVYEIINLLTPYFQKVISGKRARLA 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AVI+T+ V  L ++    +    +++  +  S         +   +         +  
Sbjct: 63  VVAVISTLVVCLLSVIFGTLVG--LLMQEMKDTSVFNARIAFILDDVQKQLMTYLPGYLP 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +      +        L+  G DF+  F +    + L   +      +       D
Sbjct: 121 VSVEELQHEFVTWLQKHVVMLQNMGKDFLHGFVTMLIGMILGAII-----SLYNIEPTVD 175

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +L      L  ++   +   V   + +T L          ++     +   +P 
Sbjct: 176 KPLLKTELMHRVALLSSSFRNIVFAQVKISLVNTVLS------AIFILGILPGFGIHLPF 229

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V+T I  ++P    +   +V     +  ++  A    ++  +   +    L   +
Sbjct: 230 AKTLVVLTFIFGLLPVIGNLISNSVVFIAALSISVPIALLALVYLMLIHKLE-YFLNAQI 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  IK         ++      G+ G+   P+  A +    +E
Sbjct: 289 VGTRIKAHAWEILLAMLVFEAAFGISGVIAAPIYYAYLKSELRE 332


>gi|255030244|ref|ZP_05302195.1| hypothetical protein LmonL_16246 [Listeria monocytogenes LO28]
          Length = 279

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 82/291 (28%), Gaps = 19/291 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           +  V +  + I   +        ++ +LV                               
Sbjct: 67  LLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT-----------------DSNND 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
                               G+  I  + +  G + ++  ++++  +             
Sbjct: 110 FINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSLGKEHLVSFT 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +Q   S    ++    K                  IIA+   ++   A W+ G P  + L
Sbjct: 170 NQFSTSKIGFIYEEV-KFFGSKFVATFGKVIEAQFIIALVNAILTTIALWILGFPQLMTL 228

Query: 245 GVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
            ++  ++ +IP    I     ++I     G +     + +   I   +   
Sbjct: 229 SIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESY 279


>gi|196016506|ref|XP_002118105.1| hypothetical protein TRIADDRAFT_33619 [Trichoplax adhaerens]
 gi|190579318|gb|EDV19416.1| hypothetical protein TRIADDRAFT_33619 [Trichoplax adhaerens]
          Length = 847

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 5/195 (2%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
            I       G   +++ + II  +  LF+      ++   +    + +      K  +  
Sbjct: 622 LIFSTLFGGGTAVINFLVDIIVFLTTLFYLLSSSENVYIPVKWAMDLIPSTTGDKFGQAA 681

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            + IR  F     +A   GL     + L GV        ++AI A IP          ++
Sbjct: 682 SEAIRGVFGASFKLAAFYGLYTWFTHSLFGVELVCIPSALSAIAAAIPFIGTYWVAVPAV 741

Query: 268 YLLI--KGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
             L     N+  A  L     +  +++D  +   + GG        T   + GG+  +GL
Sbjct: 742 LELWLVHDNVILAGLLLCCHCLPPYVIDIAIYREIKGGG---HPYVTGLAVAGGIYCVGL 798

Query: 326 LGLFIGPVLMALIAV 340
            G  +GPVL+    V
Sbjct: 799 EGAIVGPVLLCCFLV 813


>gi|251790940|ref|YP_003005661.1| hypothetical protein Dd1591_3366 [Dickeya zeae Ech1591]
 gi|247539561|gb|ACT08182.1| conserved hypothetical protein [Dickeya zeae Ech1591]
          Length = 336

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/344 (12%), Positives = 103/344 (29%), Gaps = 18/344 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF----TSWPIYSSFISKKEESST 60
           +LN +        F +   L  ++        A  + +       P +   IS K     
Sbjct: 3   LLNLKQARLLSFAFTVGGLLLLIELRLLACFIAGFLVYEIINLLTPYFQKVISGKRARLA 62

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
            +AVI+T+ V  L ++    +    +++  +  S         +   +         +  
Sbjct: 63  VVAVISTLVVCLLSVIFGSLVG--LLMQEMKDTSVFNARIAFILEDVQKQIMTYLPGYLP 120

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
               +               L+  G DF+  F +    + L   +S+  +   +      
Sbjct: 121 VSVEELQHEFVMWLQKHVEMLQNMGKDFLHGFVTMLIGMILGAIISLYSIEPTVEKPLLK 180

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              + +            + +    +V  V+ +             ++     +   +P 
Sbjct: 181 TELMHRVALLSSSFRNIVFAQVKISLVNTVLSA-----------IFILGVLPGFGIHLPF 229

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L  +T I  ++P    +   +V     +  ++  A    ++  +   +    L   +
Sbjct: 230 AKTLVALTFIFGLLPVIGNLISNSVVFIAALSISLPIALLALVYLMLIHKLE-YFLNAQI 288

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  IK         ++      G+ G+   P+  A +    +E
Sbjct: 289 VGTRIKAHAWEILLAMLVFEAAFGISGVIAAPIYYAYLKSELRE 332


>gi|329120258|ref|ZP_08248926.1| hypothetical protein HMPREF9123_2357 [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462599|gb|EGF08922.1| hypothetical protein HMPREF9123_2357 [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 356

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 82/271 (30%), Gaps = 1/271 (0%)

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            V     + ++ L  + +      + +          +   L D              L 
Sbjct: 78  LVSATLAIGMVCLAIFLLSLGVYHMVQGGHIGVMLGKLAAILEDTKNSKELPAALLNLLP 137

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +  +                + R +      F+   + II   +  F       S  +  
Sbjct: 138 NNTAEIKAQAVGFINEYSAALTRISKNSITSFVYVLIGIIIGAMLSFHRLNMRRSRRKMP 197

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
               E L      + S     + ++    +  +  G  L L    +   +P  + + VI 
Sbjct: 198 PFKAELLRRIRNFETSFERVFIAQAKISLVDTLLTGLYLYLVLPLFGVELPFRLTVLVIA 257

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ +IP    +    + I L +  +++ A    ++  +   +    L   ++G  I+  
Sbjct: 258 FVVGLIPVAGNLISNTIIIILSLGTSLYVALASLVFLVVIHKLE-YFLNAKIIGSEIESS 316

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  ++   R  G+ G+ + PV  A + 
Sbjct: 317 AWELLVAMIVFERVFGIGGIIVAPVYYAYLK 347


>gi|156332902|ref|XP_001619316.1| hypothetical protein NEMVEDRAFT_v1g224305 [Nematostella vectensis]
 gi|156202278|gb|EDO27216.1| predicted protein [Nematostella vectensis]
          Length = 270

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 11/212 (5%)

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           +  V LL L      ++  L +++         +   L +    +  +E   + +   + 
Sbjct: 1   MLGVFLLVLMPLLWRQVITLFNELPRMLGEWQSLFLLLPERYPTLITNEQVLQLIEAVRG 60

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                      +       F+     + +   + ++ + I +FFF +D   I        
Sbjct: 61  E--------AGSVGQSALSFSLSSLPMLVSIMIYVVLVPILVFFFLKDRELIGVWFRGYL 112

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                A   +++  + K I +   G  I  I  G+V   A+   G+     L +   +  
Sbjct: 113 PRE-RALITQVAEEMNKQIANYIRGKVIEIIICGVVTYIAFAALGLNYAALLALFVGLSV 171

Query: 253 MIPGGAPISFTAVSIY--LLIKGNIFNATCLF 282
           ++P    +  T       L   G       L 
Sbjct: 172 VVPYIGAVVVTVPVALIGLFQWGFGDQFIYLM 203


>gi|122894058|gb|ABM67681.1| putative permease [Faecalibacterium prausnitzii A2-165]
          Length = 235

 Score = 52.3 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/193 (7%), Positives = 46/193 (23%), Gaps = 9/193 (4%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSF---------ISKKEESSTFLAVIATVSVMCL 73
           ++  L G   P +   +I +   P+ +                 ++     +  +  + L
Sbjct: 41  AVSTLTGILMPFIYGSVIAYLLKPVCNWIEAFLHKLFPERMHRFANMLAVALTILFGLLL 100

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               ++ +    +  +  L           +        I       +          + 
Sbjct: 101 IYALIMMIVPQLINSVTALYFTARDNIGDFVEWISKQEFIANNKKLLDFIESSYDSLDAN 160

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                       +  I   A+   +  + +  + +  +I   +         QQ   +  
Sbjct: 161 LDAWIKNTLLPSMQNILSGAAVGVVNVVTWIKNFVIGLIVSVYLLASRKKFGQQGKLILY 220

Query: 194 HLFPAYWKKISRI 206
            L    W  +   
Sbjct: 221 SLVKPRWADLIME 233


>gi|212212819|ref|YP_002303755.1| permease [Coxiella burnetii CbuG_Q212]
 gi|212011229|gb|ACJ18610.1| permease [Coxiella burnetii CbuG_Q212]
          Length = 96

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 20/66 (30%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L PFL    + L  +     ++      G   +F    L  L+ ++      A  
Sbjct: 30  LDGNLLVPFLFSEAMDLHPIVIILSILVFGGIWGFWRIFFAIPLATLVKMVLNAWPKARI 89

Query: 351 ENKEKI 356
              +  
Sbjct: 90  SQNDTP 95


>gi|159485428|ref|XP_001700746.1| hypothetical protein CHLREDRAFT_127052 [Chlamydomonas reinhardtii]
 gi|158281245|gb|EDP07000.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 204

 Score = 51.9 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 4/203 (1%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +     +   ++   F      + L  +  +I  F F  D   IS+ + SL        +
Sbjct: 1   MLKGYTNTAAKYTGLFLKSVAKFSLQALVSLILGFLFVWDMPRISRGISSLATSRLAPVY 60

Query: 201 KKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +++ +     ++          IA+    +  +  WL  +P    L +   + + IP  
Sbjct: 61  NEVAPMLLVFGQLFGKALQVQAQIAVVNTALTAAGMWLLAIPGIGLLSLFVFLCSFIPIM 120

Query: 258 A-PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGL 316
              IS   +    L +        + +  A+  F+    L P +    +KL  L     L
Sbjct: 121 GCIISTVPIGFVALTEYGFVKLAMVIVMVAMVHFVEAYALNPAIYSAHLKLHPLMVLSVL 180

Query: 317 VGGVRTMGLLGLFIGPVLMALIA 339
           +     +G+ GL +         
Sbjct: 181 LIAEHNLGVWGLLLAVPSTVFAL 203


>gi|153843536|ref|ZP_01993574.1| permease PerM [Vibrio parahaemolyticus AQ3810]
 gi|149745311|gb|EDM56562.1| permease PerM [Vibrio parahaemolyticus AQ3810]
          Length = 134

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 42/125 (33%), Gaps = 1/125 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           +    +P  +    I+    +++YF     AP+L A+++ +           +     T 
Sbjct: 10  QRRFSDPHAVSLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVVKLS-RMGVPRTL 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
             +I  +  + + ++ L  L      ++  L++ +             L +    +   +
Sbjct: 69  SVIIVLLIFISIMLIALFGLVPTIWTQVGNLINDIPNMYNGLQKFIMTLPERHPELANLQ 128

Query: 122 LWTKH 126
           +    
Sbjct: 129 IVETV 133


>gi|126651377|ref|ZP_01723584.1| hypothetical protein BB14905_12445 [Bacillus sp. B14905]
 gi|126591906|gb|EAZ85989.1| hypothetical protein BB14905_12445 [Bacillus sp. B14905]
          Length = 259

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 66/235 (28%)

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
              +  I   +  +       S  +S+ I        +  D I  + +    + + + + 
Sbjct: 17  INSVIVIFPEIRNTLQNFPLFSEYESMFIQVLKEKSLSIFDSIIIYTADLFQLLMKHVIE 76

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           +   ++A +F   +               +   W+     + ++          +     
Sbjct: 77  VFIFLVAYYFALLETRKSRYWFFQYVPKKYRQEWQSHFANIMQLFHYFLYVEFQLFTITL 136

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           L+L   + +      +    I A   ++P      F                    L   
Sbjct: 137 LILCGGFMILQFEQAIIKAFIVAFADVLPFFGIGVFLVPMSIYFYFNGNTFLCVAILLLY 196

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + + +  +     L    ++L    TFF     +   G  G+ + P+ + L   +
Sbjct: 197 LFVQLTRQLAESMLWSNTLQLRTFHTFFISAASILLFGFYGILLSPIFLFLAVKL 251


>gi|168184634|ref|ZP_02619298.1| putative membrane protein [Clostridium botulinum Bf]
 gi|237795863|ref|YP_002863415.1| hypothetical protein CLJ_B2652 [Clostridium botulinum Ba4 str. 657]
 gi|182672278|gb|EDT84239.1| putative membrane protein [Clostridium botulinum Bf]
 gi|229262364|gb|ACQ53397.1| putative membrane protein [Clostridium botulinum Ba4 str. 657]
          Length = 326

 Score = 51.9 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/323 (12%), Positives = 102/323 (31%), Gaps = 20/323 (6%)

Query: 1   MRETMLNPQ-GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESS 59
           MR+     +  I   +I  I  +    +K +F P    L++ F   PIY    +K   ++
Sbjct: 1   MRQYKHKYKDIIYAIIIFIIFFLLALLVKNYFKPFFIILVLLFLCNPIYDFLCNKNIFNN 60

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
           +  ++I+ + V  +  + +  +  +    +  L                 ++ +      
Sbjct: 61  SVNSIISIILVNLILFLLIFLIGNFIYNNLILLKGYYYNFKTEIDCFIGDINKMLNMNKH 120

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                 +      L                  F  +      ++  +     ++++F   
Sbjct: 121 IFNKNLNNIDTTLLN---------------GDFFRKGASYTTEWLFAYFIASLSIYFILV 165

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
           D ++I + ++           +     + ++I+        + I   L       +  + 
Sbjct: 166 DKYAILENIEKYIGSNEFEKIRDKIYKLKEIIKIEC----CLIIFTTLQTIIGLKILNIN 221

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +++ LGV+  I+ M+P    +      I        +      +   + L I  + L   
Sbjct: 222 NYLMLGVLCGILDMLPYIGTVVIFLPLILYQFYTKNYIIFLGLICLYLLLIITRQILETK 281

Query: 300 LVGGPIKLPFLPTFFGLVGGVRT 322
            +   ++LP L     +  G + 
Sbjct: 282 FMSSKLQLPALAIIISIYIGFKI 304


>gi|170591957|ref|XP_001900736.1| chromosome 9 open reading frame 5 [Brugia malayi]
 gi|158591888|gb|EDP30491.1| chromosome 9 open reading frame 5, putative [Brugia malayi]
          Length = 755

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 69/220 (31%), Gaps = 22/220 (10%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
               +  I      FG+   ++ + I   +  L++       I      L + L P++  
Sbjct: 540 LGTILFTILVIVVNFGLEIFNFFIEITVFLTTLYYLLSSSQDIWLPTKWLSDALPPSHDT 599

Query: 202 ------KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV--ITAIMAM 253
                  I   + K I   F+    +++  GL     + +  +       +  + A+ A 
Sbjct: 600 TSSAQLYIIPAIEKAISGVFVLSAKMSLFYGLYTYFIHAVFDINVVFIPSIKLLAAVFAS 659

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI------KL 307
           IP  AP          L       A  +              L P +             
Sbjct: 660 IPVMAPCVVCIFGFLELYFAEHEVAAAVLFVLIS--------LAPKVFADTAFYNELRGS 711

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIM 347
               T   ++GG+  +GL G  IGP+L+  + V+    + 
Sbjct: 712 HPYVTGLAIIGGMYWLGLQGAIIGPILLCSVIVLLNVYVK 751


>gi|213857376|ref|ZP_03384347.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 200

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 61/192 (31%), Gaps = 1/192 (0%)

Query: 2   RETMLNPQGIMRWMIMFI-ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           R+     Q ++  + + I I+  L+ ++ F      A  I   +WP+            +
Sbjct: 5   RQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTIVIATWPVLLKLQKILWGRRS 64

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              ++ T+ ++ LF++P+  L    +     L+  V   +     +    +    G    
Sbjct: 65  LAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTGGDMTLPDLAWLNNIPLVGAKLY 124

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
             W   L    S  +            +    A+  G   +   L ++F  +  +   + 
Sbjct: 125 AGWHSLLDMGGSAIMAKVRPYIGTTTIWFVGQAAHIGRFMMHCALMLLFSALLYWRGEQV 184

Query: 181 GFSISQQLDSLG 192
              I      L 
Sbjct: 185 AMGIRHFACRLA 196


>gi|29654045|ref|NP_819737.1| permease [Coxiella burnetii RSA 493]
 gi|161830120|ref|YP_001596628.1| permease protein PerM, truncation [Coxiella burnetii RSA 331]
 gi|29541311|gb|AAO90251.1| permease [Coxiella burnetii RSA 493]
 gi|161761987|gb|ABX77629.1| permease protein PerM, truncation [Coxiella burnetii RSA 331]
          Length = 96

 Score = 51.5 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 9/66 (13%), Positives = 19/66 (28%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +    L P L    + L  +     ++      G   +F    L  L+ ++      A  
Sbjct: 30  LDGNLLVPLLFSEAMDLHPIVIILSILVFGGIWGFWRIFFAIPLATLVKMVLNAWPKARI 89

Query: 351 ENKEKI 356
              +  
Sbjct: 90  SQNDTP 95


>gi|167946103|ref|ZP_02533177.1| hypothetical protein Epers_05977 [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 85

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 22/82 (26%)

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +     G   +   L     I   +    L P L    + L  +     ++      G  
Sbjct: 1   MAWFQWGWSADFAWLTTAYFIIQALDGNVLVPLLFSEVVNLHPVAIIVAILVFGGFWGFW 60

Query: 327 GLFIGPVLMALIAVIWKESIMA 348
           G+F    L  L+  +       
Sbjct: 61  GVFFAIPLATLVQAVLVAWPRQ 82


>gi|323978260|gb|EGB73346.1| TqsA transporter [Escherichia coli TW10509]
          Length = 91

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/74 (14%), Positives = 29/74 (39%)

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           +    + A  +     +   +    L P ++G  + L  L  F  L+     +G +G+ +
Sbjct: 1   MFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLL 60

Query: 331 GPVLMALIAVIWKE 344
              L  ++ +  ++
Sbjct: 61  SVPLTIIVKIALEQ 74


>gi|271499259|ref|YP_003332284.1| hypothetical protein Dd586_0686 [Dickeya dadantii Ech586]
 gi|270342814|gb|ACZ75579.1| conserved hypothetical protein [Dickeya dadantii Ech586]
          Length = 336

 Score = 51.1 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/312 (9%), Positives = 86/312 (27%), Gaps = 13/312 (4%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESS-TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKEL 92
            ++  ++      +   F             V    +++   +  +       +++  + 
Sbjct: 33  FIAGFLVYEIINLLTPYFQKVISGKRARLAVVAVISTLVVCLLSVIFGSLVGLLMQEMKD 92

Query: 93  VSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRF 152
            S         +   +         +      +               L+  G DF+  F
Sbjct: 93  TSVFNARIAFILEDVQKQIMTYLPGYLPVSVEELQHEFVMWLQKHVEMLQNMGKDFLHGF 152

Query: 153 ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIR 212
            +    + L   +S+  +   +         + +            + +    +V  V+ 
Sbjct: 153 VTMLIGMILGAIISLYSIEPTVEKPLLKTELMHRVALLSSSFRNIVFAQVKISLVNTVLS 212

Query: 213 STFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIK 272
           +             ++     +   +P    L  +T I  ++P    +   +V     + 
Sbjct: 213 A-----------LFILGLLPGFGIHLPFSKTLVALTFIFGLLPVIGNLISNSVVFIAALS 261

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            ++  A    ++  +   +    L   +VG  IK         ++      G+ G+   P
Sbjct: 262 ISLPIALLALVYLMLIHKLE-YFLNAQIVGTRIKAHAWEILLAMLVFEAAFGISGVIAAP 320

Query: 333 VLMALIAVIWKE 344
           +  A +    +E
Sbjct: 321 IYYAYLKSELRE 332


>gi|213420447|ref|ZP_03353513.1| hypothetical protein Salmonentericaenterica_22953 [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
          Length = 76

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 8/50 (16%), Positives = 23/50 (46%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           ++   + P ++G  + +  L  F  L+     +G +G+ +   L ++  +
Sbjct: 1   MIGNIMEPRMMGHRLGMSTLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKI 50


>gi|197120373|ref|YP_002140800.1| membrane protein [Geobacter bemidjiensis Bem]
 gi|197089733|gb|ACH41004.1| membrane protein, UPF0118 superfamily [Geobacter bemidjiensis Bem]
          Length = 328

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 94/331 (28%), Gaps = 17/331 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  + V +           + L +   +  +      +    +  +A+   +  +   +
Sbjct: 9   LLAALSVPVVLQFHLLPAAFAGLAVYVLTAKLAPMLPLRWGSLTQKVALAGIILFVIALV 68

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +    +  +     + + + +A +    + R L          E  T  L        
Sbjct: 69  SSICLGLWSFLRGHHGMANLLNMAAETLENLKRTL---------PEDLTAALPDTVDELR 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T +       I          F    L ++   +A+   +            L    
Sbjct: 120 EQITNMLREHGKNISSVGISGVKTFAHLILGMVVGSLAVLHRFNKENGFPPLASDL---- 175

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAM 253
             A    ++    KV+ +      +  +   + L     + GV  P    L ++T +  +
Sbjct: 176 -HARLINLADSFDKVVFAQVKISALNTVLTAIYLAVVLPIFGVYLPMVTLLVLLTFVAGL 234

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +      + + +  +         +  +   +        +VGG +K       
Sbjct: 235 LPVVGNLISNFTIVLISLGVSPMVGIASLAFLIVIHKLE-YFTNARIVGGQVKASVWELL 293

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             ++      G+ GL   PV+ A +    K 
Sbjct: 294 CAMLFMEAIFGMAGLVAAPVVYAWLKTELKA 324


>gi|94314820|ref|YP_588029.1| hypothetical protein Rmet_5901 [Cupriavidus metallidurans CH34]
 gi|93358672|gb|ABF12760.1| conserved hypothetical protein; putative permease [Cupriavidus
           metallidurans CH34]
          Length = 364

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/295 (9%), Positives = 75/295 (25%), Gaps = 17/295 (5%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           +    +            I +  ++ +    +  L  +   +   L   +  +       
Sbjct: 76  LAPRLMRLHSRRDAIAVAILSTIILLVLTGSIWALIRFISGDGNTLDRLLDHSADIIDR- 134

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
                            + +L +       +             R  +      +   + 
Sbjct: 135 --------SRAQLPAWLSDYLPNGVDELATTLISALREHAQMAQRLGADILRTLVHILVG 186

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           +I   +   +      +      +L         + +     + I +      +  I   
Sbjct: 187 LIIGAMIALYRAISRPNRRPLALALV-----DRARTLQTAFSQFIFAQIQISLVNTILTA 241

Query: 227 LVLGSAYWLA--GVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           + L     L    +P    L  IT I  ++P    +      +   +  ++  A    L+
Sbjct: 242 IYLLVLLPLFHQHLPLSKTLVAITFIAGLLPVLGNLISNTAIVIASLSVSLPIAVVSLLF 301

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             +   +    L   ++G  I          ++      G+ G+  GP+  A + 
Sbjct: 302 LVLIHKLE-YFLNARIIGARIHAAAWELLTVMLVMETLYGIPGVIAGPIFYAYVK 355


>gi|253996384|ref|YP_003048448.1| putative permease [Methylotenera mobilis JLW8]
 gi|253983063|gb|ACT47921.1| putative permease [Methylotenera mobilis JLW8]
          Length = 347

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 78/280 (27%), Gaps = 13/280 (4%)

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
           A   ++   +  L          ++     + +       +      I        L   
Sbjct: 74  AVGILVFFIVSLLSLAGAGLTAFLRSDAGSLTVLLAKMAQILEDSKKILPSWLLMHLPAD 133

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
            L+  + L     T               +          + I + + +        +++
Sbjct: 134 ALTFKEMLTTWLRTHAGE----------LQVVGKEAGRVTAHILIGMIIGGMLALREAVT 183

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
            +               +S    +V+ +      I     G+ L     L G+   +   
Sbjct: 184 VEHFKPFAGALYMRCALLSDAFKRVVFAQIRISAINTFFTGIYLAVVLPLMGIHLPLVKT 243

Query: 246 VIT--AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           +I    ++ +IP    +   AV + + +   +  A    L+  +        L   +VGG
Sbjct: 244 MIAITFVVGLIPVIGNLISNAVIVVVSLSQTLAVALGSLLYLVVIHKFE-YFLNARIVGG 302

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
            I+         ++      GL+G+   P+  A +    +
Sbjct: 303 QIRANAWELLIAMLCMEAAFGLIGIVAAPIYYAYVKAELR 342


>gi|86171039|ref|XP_966135.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
 gi|46361100|emb|CAG25387.1| conserved Plasmodium membrane protein, unknown function [Plasmodium
           falciparum 3D7]
          Length = 1096

 Score = 51.1 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 4/186 (2%)

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
           D  +  +    AL++      S+   L  +   L           +   +++  +     
Sbjct: 720 DAIVQAVIFFTALYYLISSKKSVLNYLKDVL--LVVDPSSIFFYNITNNLKAIIICTLKR 777

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
                L +   +     P      ++  I+++IP  +P     V I  L          L
Sbjct: 778 IYFYTLYIWLIFSFFQFPIIYVPTLLCIILSLIPVISPEILILVIILHLWIIKKQKIISL 837

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            L+  I  F +       +               L   + T G  GL +GP++ ++  ++
Sbjct: 838 ILF--IVNFFIYCYFSTSIYNEIPHTHAWLVSLSLFLSISTFGSKGLILGPLIGSIPLIL 895

Query: 342 WKESIM 347
            + +I 
Sbjct: 896 HQVAIH 901


>gi|237798976|ref|ZP_04587437.1| permease [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|330876425|gb|EGH10574.1| permease [Pseudomonas syringae pv. glycinea str. race 4]
 gi|331021830|gb|EGI01887.1| permease [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 62

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 23/52 (44%)

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           G  I L  +   F ++ G    G  G+ +   + A+I V+ +      K+++
Sbjct: 1   GDRIGLHPVAVIFAILAGGELFGFTGILLALPVAAVIMVLVRHMHDVYKDSE 52


>gi|282890913|ref|ZP_06299429.1| hypothetical protein pah_c030o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499197|gb|EFB41500.1| hypothetical protein pah_c030o011 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 215

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/195 (9%), Positives = 52/195 (26%), Gaps = 11/195 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++      + F+  FF+P++  +++ +   P+     +     S        + +  +  
Sbjct: 27  LLPFFYPIVQFVVAFFSPLILGIVLYYMFRPLVQYLTNH-HIPSAIAISSIFLILGGIIA 85

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
               FL    +  ++E+ +      +          +I      S           +   
Sbjct: 86  SIATFLIPTIITSLQEVTTSPAQKIEEVKEATISFLNIFNLNLYSY----------NEVK 135

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T        F+                  +     LF+  +D          +   +
Sbjct: 136 SLITNFLEKIQQFVFANTYLIISTATHIAFIFVLTPFCLFYLLKDDQKFYGWTMEMIPPV 195

Query: 196 FPAYWKKISRIVPKV 210
           +    +KI   + K 
Sbjct: 196 YRPQCEKIFHHLDKT 210


>gi|258511154|ref|YP_003184588.1| hypothetical protein Aaci_1168 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477880|gb|ACV58199.1| hypothetical protein Aaci_1168 [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 985

 Score = 50.8 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/338 (10%), Positives = 75/338 (22%), Gaps = 37/338 (10%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
             P L   +  +  W       ++        AV++T     L  +            + 
Sbjct: 125 LLPFLVLAVGVYLVW---QFLRARHV--KMLTAVVSTAFSGALLFIFFSHFSP-IFQSVN 178

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE-TFLKTNGIDFI 149
            L   V   +         +S++         W  ++  P  +      +    +     
Sbjct: 179 NLSENV---DNQVSAAIESISNLRASTIYDAAWNIYVLEPWEIAQFGHGSNNLQDFNVSS 235

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                 +                   F      S  Q L +        +          
Sbjct: 236 ASVGESYTTDSGGTATIQSGDNWVTLFMQNTTTSARQSLLNDILKTPQPFAHTGWTSTDV 295

Query: 210 VIRS-------TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI----MAMIPGGA 258
              +         + + +       +   A++L G+           I    +  +P   
Sbjct: 296 KNSNPYNNIVFLAVMLLLGLPCLMFLAVMAFYLFGLEMAFLFMTFMGIFVLPLGFVPEVG 355

Query: 259 PISFT-----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
                     A+   LL   N      L +   +   ++D      L G    L      
Sbjct: 356 WTYVLKWVKQAIGYLLLKLAN---VVYLSITFLLISIVMDTV---SLTGDETTLVTGAIM 409

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
             L+          +F GP+    I    +       E
Sbjct: 410 AALIFLGAL-----IFRGPIFSTFIMPTLERFKSGSSE 442


>gi|257454309|ref|ZP_05619575.1| putative membrane protein [Enhydrobacter aerosaccus SK60]
 gi|257448326|gb|EEV23303.1| putative membrane protein [Enhydrobacter aerosaccus SK60]
          Length = 382

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 74/269 (27%), Gaps = 3/269 (1%)

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +  L     L +      +       +        +        L    +S    + +
Sbjct: 108 FAIAILATLISLTVYVFGDWIADKASVDVFNKLIRQILDIFDQLHTLLPASISQHLPISV 167

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +  + I          G+  L     ++  ++            S    +     
Sbjct: 168 SSFQAMLMSTIKSHAPQLQLVGIHTLRGLGYVLAGVVIGCIVALQVPVNSAAHKTPFTQH 227

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVITAIMAM 253
               + ++      V  +     +I  I   + L     L G  +P    + +IT    +
Sbjct: 228 LRQKFDELIMGFNDVFFAQVKISSINTILTSVFLLGILPLLGHPLPMAWTVVLITFCAGL 287

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
            P    +    V + L +   +  +    +W      +    L   ++G  I+       
Sbjct: 288 FPVVGNLVSNIVIVLLSLTHGLGISILSLVWLVSIHKLE-YFLNAQIIGHKIRASAWELL 346

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
             ++    T GL GL   PV+ A I  I 
Sbjct: 347 LFILVLEATFGLAGLISAPVIYAQIKRIL 375


>gi|194364833|ref|YP_002027443.1| hypothetical protein Smal_1055 [Stenotrophomonas maltophilia
           R551-3]
 gi|194347637|gb|ACF50760.1| conserved hypothetical protein [Stenotrophomonas maltophilia
           R551-3]
          Length = 341

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/334 (11%), Positives = 97/334 (29%), Gaps = 13/334 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
             P+     M++  + ++L    G    +LS L++   +  + S+   K          +
Sbjct: 12  PVPRIAAWLMMLLGMWLALKL--GLVVTLLSGLLVFQLTHLLASTVEGKLPPGRARAIAV 69

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
             +S + +  + L  +       +              +     + +       + L   
Sbjct: 70  IVLSAVIISALVLAGIG------VASFFRNETGGPDALLARLMEILNSSRHQVPALLQPY 123

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSIS 185
                 +L+     +   +    +    +    + +   + ++   +   +       + 
Sbjct: 124 IPEDMPALRTALNDWAAEHQRQ-LGVAGTSVVQVGVRVLIGMVLGAMIALYDELPLPKMG 182

Query: 186 QQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALG 245
                L              +  +V  S    +       G++         +P    L 
Sbjct: 183 PLAQELIGRTSRLATAFRQVVFAQVKISLLNTVFTAIFLLGVLPLFGVH---LPLSKTLV 239

Query: 246 VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPI 305
           +IT I  ++P    I    +   + +  + + A    L+  +   +    L   +VGG I
Sbjct: 240 LITFIAGLLPVVGNIISNTIITIVALSVSFYVAVAALLYLIVIHKLE-YFLNARIVGGEI 298

Query: 306 KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           +         ++      GL GL   PV  A + 
Sbjct: 299 QARAWELLLAMLVMEAAFGLPGLVAAPVFYAYVK 332


>gi|154281529|ref|XP_001541577.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150411756|gb|EDN07144.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 1228

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 68/279 (24%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P+        +   +     +   +    F+   +F
Sbjct: 733  WLISAIQGILPPLFLAILMAVL--PLILRFLSRNQGVHTGMAVELTVQNYYFAFLFVQIF 790

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 791  LVVSISSGFTTIFNSITD-VTSIPQLLAQNIPRASNYFFSYMVLQAMSVSAGALVQIFAL 849

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 850  VSWFILAPILDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMVFNVLT 909

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +       + 
Sbjct: 910  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDSEGNVA 969

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V+I  +    + N     L+  + + + D
Sbjct: 970  CEGQAICMIVVAILTVGFQYLLNEAFNPLFRYLPITLED 1008


>gi|149925677|ref|ZP_01913941.1| hypothetical protein LMED105_05617 [Limnobacter sp. MED105]
 gi|149825794|gb|EDM85002.1| hypothetical protein LMED105_05617 [Limnobacter sp. MED105]
          Length = 360

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/339 (12%), Positives = 98/339 (28%), Gaps = 4/339 (1%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            ++  + ++I ++SL    G  A +    +  FT             + +          
Sbjct: 20  SVVGILAIWISMLSLKIGVGLIAGLAIFALTRFTRRGFVHLLQPHINKFNGAFMRGLFGW 79

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           +       ++      +        + VLA             +      +    + +  
Sbjct: 80  LPTFLTTAVVAAAVVLLGIGLNSGVRFVLATMTQQGPQLVEEALRNLNSVTASLPQAIKE 139

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS-ISQQL 188
               K      + +        +   FG       L  +F +I          + ++   
Sbjct: 140 HIPGKPSELFRMISKDDSDFVGYIRSFGGASFFIFLQFVFALILGVSAALMVPAPVAGGP 199

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGV 246
                  +    +K  R    ++ +             + +        V  P    L +
Sbjct: 200 AKPLADAWLQTLEKYVRCFTLLMGAQVYVSIWNTFCTAVFIYGILPAFDVVLPFRELLLM 259

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
            TA+ ++IP    I    + + L I+  +F A    L+  I   +    +  +++G  ++
Sbjct: 260 FTAVASLIPAAGNIMANTLILVLTIRYGVFVALGSVLYLFIIHKLE-YFVNGYIIGRNVR 318

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                    ++ G    GL GL   PV  A + + W+  
Sbjct: 319 ASVPEMLIAIILGEVAFGLPGLITAPVTYAFLKMHWQRW 357


>gi|169829560|ref|YP_001699718.1| hypothetical protein Bsph_4124 [Lysinibacillus sphaericus C3-41]
 gi|168994048|gb|ACA41588.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
          Length = 259

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 66/235 (28%)

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
              +  I   +  +       S  +S+ I        +  D I  + +    + + + + 
Sbjct: 17  INSVIVIFPEIRNTLQNFPLFSEYESMFIQVLKEKSLSIFDSIIIYTADLFQLLMKHVIE 76

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
           +   ++A +F   +               +   W+     + ++          +     
Sbjct: 77  VFIFLVAYYFALLETRKSRYWFFQYVPKKYRHEWQSHFAKIMQLFHYFIFVEFQLFTITL 136

Query: 227 LVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGA 286
           L+L   + +      +    I A   ++P      F                    L   
Sbjct: 137 LILCGGFMILQFEQAIIKAFIVAFADVLPFFGIGVFLVPMSIYFYFNGNTFLCVAILLLY 196

Query: 287 IELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
           + + +  +     L    ++L    TFF     +   G  G+ + P+ + L   +
Sbjct: 197 LFVQLTRQLADSMLWSNTLQLRTFHTFFISAASILLFGFYGILLSPIFLFLAVKL 251


>gi|258574525|ref|XP_002541444.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901710|gb|EEP76111.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 1192

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/280 (8%), Positives = 69/280 (24%), Gaps = 14/280 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             L  ++G   P+  ++++     P+        +  S+     +   +    F+   LF
Sbjct: 705 WLLSAIQGILPPLFLSILMALL--PLILRFLSKNQGVSTGMAIELTVQNYFFAFLFVQLF 762

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          + + +         +           + S +  + +S      +   + 
Sbjct: 763 LVVSISSGFSTIFNSIKD-VTSVPELLATNIPKASNYFFSYMVLQAMSVSAGALVQIFSL 821

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 822 VSWFILAPIFDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 881

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  +V +              G            GV       +    +     G   
Sbjct: 882 FTLFWVVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGVYVMEVCLIGMFFLVRDQNGD-- 939

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                   +  +G       L     +  F++++  RP  
Sbjct: 940 --------VACEGQAICMIILLFATILFQFLLNQAFRPLF 971


>gi|126642497|ref|YP_001085481.1| hypothetical protein A1S_2461 [Acinetobacter baumannii ATCC 17978]
          Length = 312

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 90/315 (28%), Gaps = 9/315 (2%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
             A   +  +I      + S      +     + +   +S++ + ++          +  
Sbjct: 3   LLASFFAGFLIYEIIISLSSIVERYIDGQRARIFISILLSIITISLIAFFITSLISFVVY 62

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
                 +   N         L    G      +          +    +  + T      
Sbjct: 63  DLKGVGLHSINGKVDQTLLHLQAEIGKYLPGYIPDSVTELKDEIFAFMKDNVTT------ 116

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            + AS   +  L   +  + + I +        +      SL              +V  
Sbjct: 117 LKNASSDILHNLVTMVMGLIIGILVAIHGFHRRTPQPVFKSLLIQRIQKLSISFRNVVFA 176

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I+ + +   +  +   ++L    W   +P    L ++T +  +IP    +    ++   
Sbjct: 177 QIKISAINTLLFILFAFVLLPI--WGVHLPFAKTLTILTFMFGLIPILGNLISNTLTFIA 234

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  ++  A    L+  +   +    +   ++G  I          ++      GL GL 
Sbjct: 235 ALTISLGLAGVALLYLVLVHKLE-YFINAKIIGHKINANAWEILLAMLIFESIFGLSGLI 293

Query: 330 IGPVLMALIAVIWKE 344
             P+  A + +  K+
Sbjct: 294 AAPIFYAYLKLELKD 308


>gi|207728397|ref|YP_002256791.1| permease protein [Ralstonia solanacearum MolK2]
 gi|206591643|emb|CAQ57255.1| permease protein [Ralstonia solanacearum MolK2]
          Length = 341

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 86/336 (25%), Gaps = 13/336 (3%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
                      ++  +I+  L+       P   A  + +       + +  +   S    
Sbjct: 9   PSRTVDTASYVLVAVMIVAVLWL---HLLPAAIAGFLVYALARRLEARLRARRTLSKRAK 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA   V  +  + L  +       + E    +         V   L D      A  + 
Sbjct: 66  SIAVTGVFLIAALILAAIGLGIGR-LVEHGHGLDGMLLRIADVLDHLRDSLPPTIADYVP 124

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    L  + +          I        M  +   L  +          R    
Sbjct: 125 QSVSELRARLVEMIKEHGHQVSTLGI-DGLRASAMALVGLILGAMMAWSETPDPARSKPL 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +  L  LG         + +       +     +        L+         VP   +
Sbjct: 184 SAALLHRLGR-------LETAFEAVVFAQVKISALNTALAAIYLMGVVPALGLHVPYSKS 236

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++T +  +IP    +      + + +  ++  A     +  I   +    +   ++G 
Sbjct: 237 LVLLTFVAGLIPVAGNLISNTAIVLMSVAVSLELAVGSLAFLVIVHKLE-YFVNARIIGS 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            I          L+      G+ G+   PVL A + 
Sbjct: 296 RIDARAWELILALIVMEALFGVGGVIAAPVLYAYLK 331


>gi|18423808|ref|NP_568833.1| unknown protein [Arabidopsis thaliana]
 gi|16648987|gb|AAL24345.1| Unknown protein [Arabidopsis thaliana]
 gi|28059051|gb|AAO29982.1| Unknown protein [Arabidopsis thaliana]
 gi|332009320|gb|AED96703.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 648

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 73/219 (33%), Gaps = 7/219 (3%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
               +  I          F ++    +IF+ +       +   +++Q+ ++      A  
Sbjct: 434 GAKFVFSIGNLIISGAAEFFNFISQLMIFIWVLYILITSESGGVTEQVMNMLPINASARN 493

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +   ++   I    L    IA  +G +    + L  +       V+  I A++P     
Sbjct: 494 -RCVEVLDLAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYW 552

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T  +   L+    +    + +  ++   ++ +     +           T   ++GGV
Sbjct: 553 FATIPAALQLVLEGRY---IVAVILSVTHLVLMEYGASEIQDDIPGSNAYLTGLSIIGGV 609

Query: 321 RTM--GLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                 L G  +GP++  ++  +       +    +KI+
Sbjct: 610 TLFPSALEGAIMGPLITTVVIALKDLYAEFVLNEPKKIN 648


>gi|212696937|ref|ZP_03305065.1| hypothetical protein ANHYDRO_01500 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676025|gb|EEB35632.1| hypothetical protein ANHYDRO_01500 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 170

 Score = 50.4 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 1/148 (0%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             + KK  +     ++     + I +I   +VL     +  +   + + ++ A++ ++P 
Sbjct: 3   KEFLKKYLKEAGLGLKDLLRALIISSIINFVVLAIGLGILKIKYFILIALLIALVDLLPV 62

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP-TFFG 315
                       + I                  FI+ + + P ++G  I L         
Sbjct: 63  LGAGMVMIPWAIIEIFMGNMKLGFSLGILFALTFIIKQVIEPIILGRSIGLNPFLTILIS 122

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +   V     LG  +GPV+  +I    +
Sbjct: 123 VSFMVFLSPGLGALVGPVVSMMIGTFLE 150


>gi|85057988|ref|YP_453690.1| hypothetical protein SG0010 [Sodalis glossinidius str. 'morsitans']
 gi|84778508|dbj|BAE73285.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 333

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/344 (8%), Positives = 92/344 (26%), Gaps = 19/344 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-FAPVLSALIIGF-TSWPIYSSFISKKEESSTFL 62
           M   +  ++     ++ + +  +      P   A  + +     +   F           
Sbjct: 1   MSVSETWLKATSYLLMFLFITLIIPLHLFPCFIAGFLAYEVIISLTPWFERLVGSGR--A 58

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +    ++ +       +  +   + + +        +   + +        + 
Sbjct: 59  RWVVVTLIAAFVVIAMTLGIVSLVSFLTSDIQRGIDITAETNRIFSDVKN-----RIPDY 113

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
               L             L  + +  I      F    +   + +I   +          
Sbjct: 114 LPSFLPESAEELKDQLFALVESNLIIIRNMGRSFLHGLITIFIGLIIGAVISLNKPSGRN 173

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
           +                   +S+    ++ +      +  +   +++   + L GV   +
Sbjct: 174 TY-------FTQQLLERLHYLSQAFRNIVFAQIKVSLVNTLLTSMMILVLFPLFGVHLPL 226

Query: 243 ALGVI--TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              +I  T I  ++P    +    + I   +  ++   + + L+  +   +    L   +
Sbjct: 227 GKTLIVATFIFGLLPIIGNLISNFMIIISALSISLSVGSVMVLYLILIHKLE-YFLNAEI 285

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
           VG  I          ++      GL GL   P+  A +    + 
Sbjct: 286 VGSRINAKSWELLLAMLIFEAAFGLEGLVAAPIYYAYLKTELRA 329


>gi|5419983|emb|CAB46524.1| hypothetical protein [Rhizobium leguminosarum]
          Length = 116

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 1/107 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           L  Q     +++   +V LY       P ++ + I +   P+      +   S     + 
Sbjct: 10  LKRQIFFWLVVLVFFIVFLYVFSSILLPFIAGMAIAYFLDPVADRLE-RLGLSRMMATIG 68

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
             V+ + +F + L+ L    + +  +   ++               +
Sbjct: 69  ILVAFVIVFTLALMILIPVLISQFNDFAQRLPGYISQLQQFITQAQN 115


>gi|121608738|ref|YP_996545.1| hypothetical protein Veis_1773 [Verminephrobacter eiseniae EF01-2]
 gi|121553378|gb|ABM57527.1| conserved hypothetical protein [Verminephrobacter eiseniae EF01-2]
          Length = 343

 Score = 50.0 bits (118), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 67/254 (26%), Gaps = 6/254 (2%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           ++   +   +++      +   R            E          S        L   G
Sbjct: 87  IVNAPQQYQELLHYMARTVLELRLKLPADMAAHLPEGVADIQRIIASYLGAKAGALAMAG 146

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
             ++      +  + +    ++   ++A     +       +   L   LF   + +I  
Sbjct: 147 RAWLAGVLFAYVGLLIGALAAVRPPVLARAPLDQQEHGPLTRQLRLRITLFGESFDQIV- 205

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
                 +        +     L+     W   +P    L   T + A++P    +    V
Sbjct: 206 ----AAQFWIASFNTVLTALFLLFMLPLWGLRLPYTTVLITFTFVAALVPIVGNLVCNVV 261

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
              + +  +   A    ++  +        +   +VG   ++        +       G 
Sbjct: 262 ITIVGLSVSPLAAAACLVFLILIHKAE-YVINAKVVGRRTQMSVWELLSVMFVAEAVFGP 320

Query: 326 LGLFIGPVLMALIA 339
            GL   P+  A + 
Sbjct: 321 AGLVAAPLFYAYLK 334


>gi|225681013|gb|EEH19297.1| DUF221 family protein [Paracoccidioides brasiliensis Pb03]
          Length = 1187

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 66/279 (23%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWP-IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P +       +   +     +   +    F+   +F
Sbjct: 734  WLISAIQGILPPLFLAILMAIL--PLLLRFLSKNQGVHTGMAVELTVQNYYFAFLFVQIF 791

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 792  LVVSISSGFTTIFNSITD-VTSIPELLAQNIPRASNYFFSYMVLQAMSVSAGALVQIFGL 850

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 851  VSWFVLAPILDNTARLKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMIFNVLT 910

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +         
Sbjct: 911  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDVDGNFA 970

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V I  +    + N     L+  + + + D
Sbjct: 971  CEGQAICMIVVLILTVGFQYLLNEAFNPLFRYLPITLED 1009


>gi|301511544|ref|ZP_07236781.1| hypothetical protein AbauAB05_08188 [Acinetobacter baumannii AB058]
          Length = 272

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 81/267 (30%), Gaps = 4/267 (1%)

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           L I+ +  L ++    +  +V  +     H I      + +       +    ++    +
Sbjct: 1   LSIITISLLAFFITSLISFVVYDLKGVGLHSINGKVDQTLLHLQAEIGKYLPGYIPDSVT 60

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
                      + +  +   +S      +   +  + + I +        +      SL 
Sbjct: 61  ELKDEIFAFMKDNVTTLKNASSDILHNLVTMVMG-LIIGILVAIHGFHRRTPQPVFKSLL 119

Query: 193 EHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
                        +V   I+ + +   +  +   ++L    W   +P    L ++T +  
Sbjct: 120 IQRIQKLSISFRNVVFAQIKISAINTLLFILFAFVLLPI--WGVHLPFAKTLTILTFMFG 177

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           +IP    +    ++    +  ++  A    L+  +   +    +   ++G  I       
Sbjct: 178 LIPILGNLISNTLTFIAALTISLGLAGVALLYLVLVHKLE-YFINAKIIGHKINANAWEI 236

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIA 339
              ++      GL GL   P+  A + 
Sbjct: 237 LLAMLIFESIFGLSGLIAAPIFYAYLK 263


>gi|255018227|ref|ZP_05290353.1| hypothetical protein LmonF_11891 [Listeria monocytogenes FSL
           F2-515]
          Length = 107

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%)

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
               G   +   + +   I   I    L P L+     LP   TF  L+      G+ GL
Sbjct: 1   AYSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKTNLPVFYTFIILIFSETFFGVWGL 60

Query: 329 FIGPVLMALIAVIWK 343
            +G  +   +  I +
Sbjct: 61  IVGIPVFVFLLDILE 75


>gi|325120028|emb|CBZ55581.1| conserved hypothetical protein [Neospora caninum Liverpool]
          Length = 2214

 Score = 50.0 bits (118), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 73/258 (28%), Gaps = 46/258 (17%)

Query: 143  TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
             N  + I +                +    AL++      S  + L+ L   + P+    
Sbjct: 1268 ENTAELIGQLRRGNLSGAAGKAKEAVVFFSALYYLLCSSRSCLEYLEELLCIVDPSCI-- 1325

Query: 203  ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
            +S  + + +R+             L     Y  AG+P       ++ ++A++P   P S 
Sbjct: 1326 VSHSINRGLRAILYSSFKRFWFYSLFTWFVYESAGMPVVYVPTAVSGLLALLPLLPPESV 1385

Query: 263  TAVSIYLLIKG---------------------------------NIFNATCLFLWG---- 285
            + +   +L  G                                   + A      G    
Sbjct: 1386 SVIPCLVLWWGRGEEAVLDAQTLAAAASPGRREETSAGFSGTAAGAWWAVLSVAAGSQRK 1445

Query: 286  -AIELFIVDKTL-----RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL-I 338
                  +    +        +               +  G+ T G+ G+ IGPVL  + +
Sbjct: 1446 LGAVTLLAANAVVWWNVTTAIYREIPDSNPWLVGLSVALGLSTFGMKGIIIGPVLATIPL 1505

Query: 339  AVIWKESIMAIKENKEKI 356
             V+   +  + +  +E  
Sbjct: 1506 IVLTAAAKFSERRTREHQ 1523


>gi|295673258|ref|XP_002797175.1| DUF221 domain-containing protein [Paracoccidioides brasiliensis Pb01]
 gi|226282547|gb|EEH38113.1| DUF221 domain-containing protein [Paracoccidioides brasiliensis Pb01]
          Length = 1240

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 66/279 (23%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWP-IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P +       +   +     +   +    F+   +F
Sbjct: 734  WLISAIQGILPPLFLAILMAIL--PLLLRFLSKNQGVHTGMAVELTVQNYYFAFLFVQIF 791

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 792  LVVSISSGFTTIFNSITD-VTSIPELLAQNIPRASNYFFSYMVLQAMSVSAGALVQIFGL 850

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 851  VSWFVLAPILDNTARLKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMIFNVLT 910

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +         
Sbjct: 911  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDVDGNFA 970

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V I  +    + N     L+  + + + D
Sbjct: 971  CEGQAICMIVVLILTVGFQYLLNEAFNPLFRYLPITLED 1009


>gi|303284070|ref|XP_003061326.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226457677|gb|EEH54976.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 746

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 66/214 (30%), Gaps = 10/214 (4%)

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             T+                L Y L  +     LF         + +L  L   +     
Sbjct: 448 QVTSWAARASFSVFGVAGGVLSYVLKSVVFFTVLFHILNSEADPAVRLVELIP-VNAHVK 506

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           +   + + + +R  F+    +A+         +   GV       + + + A++P  A  
Sbjct: 507 EVAVKSLTRGVRGVFVSCVKLALFHAAFTWVTFRAFGVHFVYTSTLASGLTAILPLLASW 566

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK-LPFLPTFFGLVGG 319
           S +  +   L+           +       I    +   +    I+ +        +VGG
Sbjct: 567 SVSLPAALGLLAKGEGAKAAALVLMHWITLI---FVDIDIYQSEIRVVHPYVVGLSVVGG 623

Query: 320 VRTMGLL--GLFIGPVLM---ALIAVIWKESIMA 348
           +        G  +GP+L+   A    +++E + A
Sbjct: 624 MCVFDPALQGAVLGPLLVTACATGYNLYQELMRA 657


>gi|325093093|gb|EGC46403.1| phosphate metabolism protein [Ajellomyces capsulatus H88]
          Length = 1228

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 68/279 (24%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P+        +   +     +   +    F+   +F
Sbjct: 733  WLISAVQGILPPLFLAILMAIL--PLILRFLSRNQGVHTGMAVELTVQNYYFAFLFVQIF 790

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 791  LVVSISSGFTTIFNSITD-VTSIPQLLAQNIPRASNYFFSYMVLQAMSVSAGALVQIFAL 849

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 850  VSWFILAPILDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMVFNVLT 909

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +       + 
Sbjct: 910  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDSEGNVA 969

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V+I  +    + N     L+  + + + D
Sbjct: 970  CEGQAICMIVVAILTVGFQYLLNEAFNPLFRYLPITLED 1008


>gi|240275720|gb|EER39233.1| phosphate metabolism protein [Ajellomyces capsulatus H143]
          Length = 1228

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 68/279 (24%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P+        +   +     +   +    F+   +F
Sbjct: 733  WLISAVQGILPPLFLAILMAIL--PLILRFLSRNQGVHTGMAVELTVQNYYFAFLFVQIF 790

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 791  LVVSISSGFTTIFNSITD-VTSIPQLLAQNIPRASNYFFSYMVLQAMSVSAGALVQIFAL 849

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 850  VSWFILAPILDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMVFNVLT 909

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +       + 
Sbjct: 910  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDSEGNVA 969

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V+I  +    + N     L+  + + + D
Sbjct: 970  CEGQAICMIVVAILTVGFQYLLNEAFNPLFRYLPITLED 1008


>gi|329903343|ref|ZP_08273436.1| putative permease [Oxalobacteraceae bacterium IMCC9480]
 gi|327548421|gb|EGF33099.1| putative permease [Oxalobacteraceae bacterium IMCC9480]
          Length = 336

 Score = 49.6 bits (117), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 89/310 (28%), Gaps = 11/310 (3%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           L + ++ ++   + +  + K + SST   ++A  ++  L +  L    +  M        
Sbjct: 34  LFSGLLVYSLVHMTTPLLGK-KISSTRARLVAVAAIGVLTVALLCLAIWGSMTFFSSEAG 92

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
            + +  Q    +     D      ++ L     +    +                   A 
Sbjct: 93  SLPVLLQKMAEIIEKSRDQIPLWLSAYLPESAYALRLMITDWLRVHALE---------AK 143

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRST 214
             G         I+  +I          S    L          +    +       +  
Sbjct: 144 IIGQETGRILAHILIGMIIGAMVALYDSSPKTYLPLAAALRARLHHLSEAFQRIVFAQVR 203

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
              +  + I   L++        +P    L  +T    ++P    +   ++ + + +  +
Sbjct: 204 IAAINTVLISIYLLIILPLLDIHLPLTKTLIALTFFTGLLPVVGNLISNSLLVVIGLAHS 263

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVL 334
           +  A    ++  +        L   ++G  I          ++      G+ G+   PV+
Sbjct: 264 LHTAIGSLVFMIMVHKFE-YFLNAKIIGSHINARSWELLVAMLVMESIFGMPGIVAAPVM 322

Query: 335 MALIAVIWKE 344
            A +    +E
Sbjct: 323 YAYLKSELRE 332


>gi|301347994|ref|ZP_07228735.1| hypothetical protein AbauAB0_17149 [Acinetobacter baumannii AB056]
          Length = 266

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 3/190 (1%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            + AS   +  L   +  + + I +        +      SL              +V  
Sbjct: 71  LKNASSDILHNLVTMVMGLIIGILVAIHGFHRRTPQPVFKSLLIQRIQKLSISFRNVVFA 130

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I+ + +   +  +   ++L    W   +P    L ++T +  +IP    +    ++   
Sbjct: 131 QIKISAINTLLFILFAFVLLPI--WGVHLPFAKTLTILTFMFGLIPILGNLISNTLTFIA 188

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  ++  A    L+  +   +    +   ++G  I          ++      GL GL 
Sbjct: 189 ALTISLGLAGVALLYLVLVHKLE-YFINAKIIGHKINANAWEILLAMLIFESIFGLSGLI 247

Query: 330 IGPVLMALIA 339
             P+  A + 
Sbjct: 248 AAPIFYAYLK 257


>gi|225563137|gb|EEH11416.1| phosphate metabolism protein [Ajellomyces capsulatus G186AR]
          Length = 1228

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 68/279 (24%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P+        +   +     +   +    F+   +F
Sbjct: 733  WLISAVQGILPPLFLAILMAIL--PLILRFLSRNQGVHTGMAVELTVQNYYFAFLFVQIF 790

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 791  LVVSISSGFTTIFNSITD-VTSIPQLLAQNIPRASNYFFSYMVLQAMSVSAGALVQIFAL 849

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 850  VSWFILAPILDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMVFNVLT 909

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +       + 
Sbjct: 910  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDSEGNVA 969

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V+I  +    + N     L+  + + + D
Sbjct: 970  CEGQAICMIVVAILTVGFQYLLNEAFNPLFRYLPITLED 1008


>gi|190573224|ref|YP_001971069.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190011146|emb|CAQ44755.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 341

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/331 (10%), Positives = 96/331 (29%), Gaps = 13/331 (3%)

Query: 11  IMRWMIMFIILVSLYFLK--GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + R     ++L+ ++     G    +LS L++   +  + S+   K          +  +
Sbjct: 13  VARIAAWLMMLLGMWLALKLGLVVTLLSGLLVFQLTHVLASTVEGKLPPGRARAIAVIVL 72

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S + +  + L  +        +             + +          +    +     +
Sbjct: 73  SAIIISALVLAGIG--VASFFRNETGGPDALLARLMDILNSSRHQVPALLQPYIPEDMPA 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +L   +    +      +    +    + +   + ++   +   +      ++    
Sbjct: 131 LRAALNDWAAEHQRQ-----LGVAGTSVVQVGVRVLIGMVLGAMIALYDELPLPTMGPLA 185

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
             L              +  +V  S    +       G++         +P    L +IT
Sbjct: 186 QELIGRTSRLATAFRQVVFAQVKISLLNTLFTAIFLLGVLPLFGVH---LPLSKTLVLIT 242

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            I  ++P    I    +   + +  + + A    L+  +   +    L   +VGG I+  
Sbjct: 243 FIAGLLPVVGNIISNTIISIVALSVSFYVAVAALLYLIVIHKLE-YFLNARIVGGEIQAR 301

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                  ++      GL GL   PV  A + 
Sbjct: 302 AWELLLAMLVMEAAFGLPGLVAAPVFYAYVK 332


>gi|160897627|ref|YP_001563209.1| hypothetical protein Daci_2184 [Delftia acidovorans SPH-1]
 gi|160363211|gb|ABX34824.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 352

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 83/326 (25%), Gaps = 9/326 (2%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
            M   ++L+    L      V    ++      + +    K     +       V+   +
Sbjct: 27  LMAGALLLIMWQGLLPGMLCVCVGFLVTRALAGLLARAQPKAR-RGSLPRWTQLVAATIV 85

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            + PL  L          +        +    +   + ++   + A           +  
Sbjct: 86  ILAPLALLSGALSHTRTYITDAPQQYRELLDYLAHTVLELRDKLPADMADQLPDGAQEIQ 145

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            +L+       G       A   G+++    L I  +        R    ++        
Sbjct: 146 HLLASYLAAKAGALAHAGRAWLTGLLYAYVGLIIGALAAVRPITTRRPPLVAAL------ 199

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
                    ++       +              L+    +W   +P   AL  +T I  +
Sbjct: 200 -RERIRLMGLAFRQIVAAQFWIAAFNTFLTAIFLLGVLPHWNLTLPYTPALITLTFIAGL 258

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   AV   + +  +   A     +  +        +   +VG    +      
Sbjct: 259 VPIVGNLLCNAVITIVGLSVSPVAAAACLGFLILIHKAE-YVINAKVVGQRTHMGVWELL 317

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIA 339
             +       G  GL   P+  A + 
Sbjct: 318 AVMFVAESVFGPAGLVAAPLFYAYLK 343


>gi|213421137|ref|ZP_03354203.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. E01-6750]
          Length = 135

 Score = 49.6 bits (117), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 1/116 (0%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      L+F  G  AP+L A+++ +      +   +    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLVAIVLAYLLEWPTARLQA-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
            A I  +  + + ++    +      +   L+  +             L      +
Sbjct: 69  AASIVLILFVGILLLMAFVVMPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPAL 124


>gi|226292293|gb|EEH47713.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
          Length = 1245

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 66/279 (23%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWP-IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P +       +   +     +   +    F+   +F
Sbjct: 734  WLISAIQGILPPLFLAILMAIL--PLLLRFLSKNQGVHTGMAVELTVQNYYFAFLFVQIF 791

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 792  LVVSISSGFTTIFNSITD-VTSIPELLAQNIPRASNYFFSYMVLQAMSVSAGALVQIFGL 850

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 851  VSWFVLAPILDNTARLKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMIFNVLT 910

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +         
Sbjct: 911  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDVDGNFA 970

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V I  +    + N     L+  + + + D
Sbjct: 971  CEGQAICTIVVLILTVGFQYLLNEAFNPLFRYLPITLED 1009


>gi|300696978|ref|YP_003747639.1| permease transmembrane protein [Ralstonia solanacearum CFBP2957]
 gi|299073702|emb|CBJ53222.1| putative permease transmembrane protein [Ralstonia solanacearum
           CFBP2957]
          Length = 341

 Score = 49.2 bits (116), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/336 (11%), Positives = 87/336 (25%), Gaps = 10/336 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
             L  + +     + +  + +  L     P   A  + +       + +  +   S    
Sbjct: 6   HPLPSRTVDTASYVLVTAMIMAVLWLHLLPAAIAGFLVYALARRLEARLRARRTLSKRAK 65

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            IA   V  +  + L  +       + E    +         V   L D      A  + 
Sbjct: 66  SIAVTGVFLIAALILAAIGLGIGR-LVEHGHGLDGMLLRIADVLDHLRDSLPPTIADYVP 124

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    L  + +          I        M  +   L  +          R    
Sbjct: 125 QSVSELRARLVEMIKEHGHQVSTLGI-DGLRASAMALVGLILGAMMAWSETPDPARSKPL 183

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
            +  L  LG         + +       +     +        L+         VP   +
Sbjct: 184 SAALLHRLGR-------LETAFEAVVFAQVKISALNTALAAIYLMGVVPALGLHVPYSKS 236

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L ++T +  +IP    +      + + +  ++  A     +  I   +    +   ++G 
Sbjct: 237 LVLLTFVAGLIPVAGNLISNTAIVLMSVAVSLELAVGSLAFLVIVHKLE-YFVNARIIGS 295

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            I          L+      G+ G+   PVL A + 
Sbjct: 296 RIDARAWELILALIVMEALFGVGGVIAAPVLYAYLK 331


>gi|330790940|ref|XP_003283553.1| hypothetical protein DICPUDRAFT_147210 [Dictyostelium purpureum]
 gi|325086536|gb|EGC39924.1| hypothetical protein DICPUDRAFT_147210 [Dictyostelium purpureum]
          Length = 1667

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/254 (7%), Positives = 68/254 (26%), Gaps = 32/254 (12%)

Query: 11   IMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV 70
            ++  + +FI++ ++YF   F  P   +  + +   P+              + +   +  
Sbjct: 1379 LIIIVTLFILIRAIYF---FIMP---SGALAY--SPVADYI---------LVVLPTFIYF 1421

Query: 71   MCL-FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
                 +V L ++ ++ +L+       +       + V   +  +                
Sbjct: 1422 TAFTIVVVLWYVIFFLVLKKHRSAESLSKRIYTTVAVINAVLYLLFIAIVLVFQYTKQDK 1481

Query: 130  PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
            P +        +++     +           +   +   F+ +    +     +      
Sbjct: 1482 PNNCGSRIVIPVESTTPQRVVSIVYAVVQALISLVIGSAFLYLGSSLYSAMRSNKVGSTS 1541

Query: 190  SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
            +   H    +   ++  +                    +       A V S +   +   
Sbjct: 1542 NKAHHQRKIFTLTLTCSIG--------------FILHCIFVLIMVAANVNSIIFSFICLV 1587

Query: 250  IMAMIPGGAPISFT 263
            +  +IP  + +   
Sbjct: 1588 LTEVIPAISILWSF 1601


>gi|261195060|ref|XP_002623934.1| DUF221 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
 gi|239587806|gb|EEQ70449.1| DUF221 domain-containing protein [Ajellomyces dermatitidis
           SLH14081]
          Length = 1218

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 67/279 (24%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  A+++     P+        +   +     +   +    F+   +F
Sbjct: 724 WLISAVQGILPPLFLAILMALL--PLILRFLSRNQGVHTGMAVELTVQNYYFAFLFVQIF 781

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          + + +         +           + S +  + +S      +     
Sbjct: 782 LVVSISSGFTTIFNSITD-VTSIPQLLAENIPRASNYFFSYMVLQAMSVSAGALVQIFAL 840

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 841 VSWFILAPILDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMVFNVLT 900

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +   V +              G            G+       +    +         
Sbjct: 901 FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDAEGNFA 960

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V+I  +    + N     L+  + + + D
Sbjct: 961 CEGQAICMIVVAILTVGFQYLLNEAFNPLFRYLPITLED 999


>gi|239610701|gb|EEQ87688.1| DUF221 domain-containing protein [Ajellomyces dermatitidis ER-3]
          Length = 1218

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 67/279 (24%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  A+++     P+        +   +     +   +    F+   +F
Sbjct: 724 WLISAVQGILPPLFLAILMALL--PLILRFLSRNQGVHTGMAVELTVQNYYFAFLFVQIF 781

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          + + +         +           + S +  + +S      +     
Sbjct: 782 LVVSISSGFTTIFNSITD-VTSIPQLLAENIPRASNYFFSYMVLQAMSVSAGALVQIFAL 840

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 841 VSWFILAPILDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMVFNVLT 900

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +   V +              G            G+       +    +         
Sbjct: 901 FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDAEGNFA 960

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V+I  +    + N     L+  + + + D
Sbjct: 961 CEGQAICMIVVAILTVGFQYLLNEAFNPLFRYLPITLED 999


>gi|326317991|ref|YP_004235663.1| hypothetical protein Acav_3194 [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323374827|gb|ADX47096.1| protein of unknown function UPF0118 [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 352

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/333 (10%), Positives = 89/333 (26%), Gaps = 10/333 (3%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +     ++   +L+ ++  +G    ++ A +    +  +                     
Sbjct: 19  RTASYLLMGGALLLVMW--QGLLPGLICACLGFLLTRWLAPRLAGTLPRGWQAGGRAMHT 76

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             +    +  +       L      + VV A Q    +  +L+         EL  K   
Sbjct: 77  GQVVAATLVGIAPLVLLALAATHSRTYVVEAPQQYRELLDFLAR-----TVLELRLKLPP 131

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
              +        ++     ++   A    M    +   ++   + L          +   
Sbjct: 132 DIGAHLPEGAAEIQRTIAGYLGAKAGALAMAGRAWLGGLLHAYVGLLIGTLAAVRATGGQ 191

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY--WLAGVPSHVALGV 246
                         +     +++ + F   T   +   L L +    W   +P   AL  
Sbjct: 192 RGPLAVALADRITYLGEAFRQIVAAQFWIATFNTLLTALFLLAILPLWGLRLPYTPALIT 251

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +T +  ++P    +   AV   + +  +   A     +  +        +   +VG    
Sbjct: 252 LTFLAGLVPIVGNLLCNAVITIVGLSVSPTAAIACLAFLVLIHKAE-YVINAKVVGQRTH 310

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           +        +       G  GL   P+  A + 
Sbjct: 311 MGVWELLSVMFVAEAVFGPAGLVAAPLFYAYLK 343


>gi|227326325|ref|ZP_03830349.1| hypothetical protein PcarcW_03039 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 336

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 93/342 (27%), Gaps = 11/342 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   Q  +      +  + +       A  ++  ++      +   F           
Sbjct: 2   QLLNLKQARLLSFFFIMGGLLILLPLRLLACFIAGFLVYEIVNLLTPYFQRVISGKR--A 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I    +  L +  L  LF   +  + + +      N     +   +           L
Sbjct: 60  RWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIGYILNDIQQQIVHYLPGYL 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     L    +  +    +  + +      +  L   +    + +       +  
Sbjct: 120 PVSIEELQHELLQWVQAHIV--MLQNMGKSFLHGFVTMLIGMVLGAIVSLYNVDKDTEKP 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L      L  ++   +   V     +T L          ++         +P   
Sbjct: 178 LLKAELLRRVSLLSASFRNIVFAQVKISAVNTVLS------AIFILGALPLCGIHLPFAK 231

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+T +  ++P    +   ++     +  ++  A    ++  +   +    L   +VG
Sbjct: 232 TLVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIALVALVYLMLIHKLE-YFLNAQIVG 290

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IK         ++      GL G+   P+  A +    KE
Sbjct: 291 TRIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLKSELKE 332


>gi|29028708|ref|NP_803396.1| tail length tape measure protein [Staphylococcus phage phi13]
 gi|88195858|ref|YP_500668.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|258443251|ref|ZP_05691596.1| tail length tape measure protein [Staphylococcus aureus A8115]
 gi|18920632|gb|AAL82371.1| tail length tape measure protein [Staphylococcus phage phi13]
 gi|87203416|gb|ABD31226.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|257851540|gb|EEV75477.1| tail length tape measure protein [Staphylococcus aureus A8115]
 gi|329728634|gb|EGG65064.1| phage tail tape measure protein, TP901 family [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 1550

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 100/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        +  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKAGGLFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+ G+  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWGVIKGI 821


>gi|320139663|gb|EFW31532.1| phage tail tape measure protein, TP901 family, core region
           [Staphylococcus aureus subsp. aureus MRSA131]
          Length = 1550

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 100/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        +  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKAGGLFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+ G+  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWGVIKGI 821


>gi|282890914|ref|ZP_06299430.1| hypothetical protein pah_c030o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499198|gb|EFB41501.1| hypothetical protein pah_c030o012 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 130

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/115 (10%), Positives = 35/115 (30%)

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           +      +  + + + L  +T ++ +IP    +        + +  +        +    
Sbjct: 1   MALIGLAIIQIDNLIFLAFLTFLLGLIPYLGTLIAIIPPTLVGLTSSYLMGLTAAIVMTS 60

Query: 288 ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
              I    + P ++   + +  L     +V      G+ G      L   +  I+
Sbjct: 61  IHLIEANLITPHVMMKRLDVHPLTIILLIVASFSLFGVTGPLWITPLYVFLREIY 115


>gi|119193272|ref|XP_001247242.1| hypothetical protein CIMG_01013 [Coccidioides immitis RS]
          Length = 1239

 Score = 49.2 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/280 (8%), Positives = 68/280 (24%), Gaps = 14/280 (5%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              L  ++G   P+  ++++     P+        +   +     +   +    F+   LF
Sbjct: 753  WLLSAIQGILPPLFLSILMALL--PLMLRFLSKNQGVHTGMAIELTVQNYFFAFLFVQLF 810

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 811  LVVSISSGFSTIFNSIKD-VTSVPELLATNIPKSSNYFFSYMVLQAMSVSAGALVQIFNL 869

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 870  VSWFILAPIFDSTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMIFNVLT 929

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
              +  +V +              G            GV       +    +     G   
Sbjct: 930  FTLFWVVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGVYVMEICLIGMFFLVRDEKG--- 986

Query: 261  SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                    +  +G       L +   +  F++++  +P  
Sbjct: 987  -------EVACEGQAICMIVLLIATILFQFLLNRAFQPLF 1019


>gi|327348860|gb|EGE77717.1| DUF221 domain-containing protein [Ajellomyces dermatitidis ATCC
            18188]
          Length = 1230

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 67/279 (24%), Gaps = 10/279 (3%)

Query: 22   VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
              +  ++G   P+  A+++     P+        +   +     +   +    F+   +F
Sbjct: 736  WLISAVQGILPPLFLAILMALL--PLILRFLSRNQGVHTGMAVELTVQNYYFAFLFVQIF 793

Query: 81   LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
            L          + + +         +           + S +  + +S      +     
Sbjct: 794  LVVSISSGFTTIFNSITD-VTSIPQLLAENIPRASNYFFSYMVLQAMSVSAGALVQIFAL 852

Query: 141  LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
            +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 853  VSWFILAPILDNTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMVFNVLT 912

Query: 201  KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
              +   V +              G            G+       +    +         
Sbjct: 913  FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYVMEICLIGMFFLVRDAEGNFA 972

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V+I  +    + N     L+  + + + D
Sbjct: 973  CEGQAICMIVVAILTVGFQYLLNEAFNPLFRYLPITLED 1011


>gi|298491023|ref|YP_003721200.1| hypothetical protein Aazo_2011 ['Nostoc azollae' 0708]
 gi|298232941|gb|ADI64077.1| protein of unknown function UPF0118 ['Nostoc azollae' 0708]
          Length = 99

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           MIPG  P    +    +++  N + +  + +   I   I D  + P ++ G + L  +  
Sbjct: 1   MIPGIGPTLGVSTITLIILAQNTWLSLKVLIACIILQQIQDNLIAPRVIQGIMNLKPVVV 60

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           FF L+ G    GLLG+FI   +  ++  + +
Sbjct: 61  FFSLLVGAGLAGLLGVFISIPIGGIVVALLE 91


>gi|46204429|ref|ZP_00050018.2| COG0628: Predicted permease [Magnetospirillum magnetotacticum MS-1]
          Length = 204

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/157 (10%), Positives = 45/157 (28%), Gaps = 1/157 (0%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
              + ++      ++L  ++  +   AP+  A +I     P     + ++          
Sbjct: 13  PATRTLLALAAGVVVLAGVHAAREVLAPMFLAAVIVIICHP-ARFPLERRGWPRWAATSA 71

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTK 125
                  +    +  L + G+  +  +   +    +    V   L+ +      +E  T 
Sbjct: 72  VVTVAYLILAALVAMLAFAGVRFVDLVREYLPALVRAVDDVVDQLAAVGIDTDIAEAATS 131

Query: 126 HLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLD 162
            L   + + +         GI     F   + +    
Sbjct: 132 WLDPGRVVSLAGNVSGMALGIATAFFFVLAYAIFMAA 168


>gi|213018763|ref|ZP_03334571.1| hypothetical protein C1A_536 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995714|gb|EEB56354.1| hypothetical protein C1A_536 [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 174

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 5/154 (3%)

Query: 6   LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
           +  + I    ++  I+ +L+ ++    P L ++ +     P+ + F   +    +   V 
Sbjct: 1   MQKRHITICCVLLFIIGALFLMRPMIVPCLISVFVAHLFNPLVTKFEKYR-IPRSCSVVF 59

Query: 66  ATVSVMCLFIVPLLFLFYYGMLEMKE----LVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
            T++++  FI+ + F+      ++      LV+K+       IP      +I       +
Sbjct: 60  ITLALLIAFILVITFVLPIIYFQITLILNFLVNKIPSLKLKVIPSVLEFLNIKTEDSLFD 119

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
             +K+L    S  I       + G + I +  S 
Sbjct: 120 HLSKNLVENYSDYISYFINALSMGSNLIIQVLSA 153


>gi|159129325|gb|EDP54439.1| DUF221 domain protein, putative [Aspergillus fumigatus A1163]
          Length = 1207

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 66/281 (23%), Gaps = 16/281 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  A+++     P+        +   +     +   +    F+   LF
Sbjct: 715 WLISAIQGILPPLFLAILMALL--PLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLF 772

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  V     +    P  L+               L             
Sbjct: 773 LVVAISSSFSTIIDNV----TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQI 828

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +       +                ++  M    FF      +    +  +   L   + 
Sbjct: 829 VSLFSWFILAPLLDNTARKKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFN 888

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +   V R   L +T      G +L         P  +        +  +      
Sbjct: 889 VITFGLFWFVYRYNTLYVTKFRFDTGGLLF--------PRAINQLFTGLYVMELSLIGLF 940

Query: 261 SFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                V   +  +G       + +       ++++   P +
Sbjct: 941 FLVRDVDGNVACEGQAICMIVVLILTVGYQILLNEAFSPLI 981


>gi|71001120|ref|XP_755241.1| DUF221 domain protein [Aspergillus fumigatus Af293]
 gi|66852879|gb|EAL93203.1| DUF221 domain protein, putative [Aspergillus fumigatus Af293]
          Length = 1207

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 66/281 (23%), Gaps = 16/281 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  A+++     P+        +   +     +   +    F+   LF
Sbjct: 715 WLISAIQGILPPLFLAILMALL--PLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLF 772

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  V     +    P  L+               L             
Sbjct: 773 LVVAISSSFSTIIDNV----TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQI 828

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +       +                ++  M    FF      +    +  +   L   + 
Sbjct: 829 VSLFSWFILAPLLDNTARKKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFN 888

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +   V R   L +T      G +L         P  +        +  +      
Sbjct: 889 VITFGLFWFVYRYNTLYVTKFRFDTGGLLF--------PRAINQLFTGLYVMELSLIGLF 940

Query: 261 SFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                V   +  +G       + +       ++++   P +
Sbjct: 941 FLVRDVDGNVACEGQAICMIVVLILTVGYQILLNEAFSPLI 981


>gi|156603936|ref|YP_001429883.1| tail length tape measure protein [Staphylococcus phage tp310-1]
 gi|156604065|ref|YP_001430010.1| tail length tape measure protein [Staphylococcus phage tp310-3]
 gi|154818022|gb|ABS87450.1| tail length tape measure protein [Staphylococcus phage tp310-1]
 gi|154818151|gb|ABS87577.1| tail length tape measure protein [Staphylococcus phage tp310-3]
          Length = 1550

 Score = 48.8 bits (115), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 102/329 (31%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L      + +  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKASGLFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +          + F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLVSFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+ G+  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWGVIKGI 821


>gi|119480753|ref|XP_001260405.1| hypothetical protein NFIA_084600 [Neosartorya fischeri NRRL 181]
 gi|119408559|gb|EAW18508.1| conserved hypothetical protein [Neosartorya fischeri NRRL 181]
          Length = 1207

 Score = 48.4 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/281 (9%), Positives = 66/281 (23%), Gaps = 16/281 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  A+++     P+        +   +     +   +    F+   LF
Sbjct: 715 WLISAIQGILPPLFLAILMALL--PLILRFLCRAQGLHTGMAIELTVQNYFFAFLFVQLF 772

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  V     +    P  L+               L             
Sbjct: 773 LVVAISSSFSTIIDNV----TNVTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQI 828

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +       +                ++  M    FF      +    +  +   L   + 
Sbjct: 829 VGLFSWFILAPLLDNTARKKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFN 888

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
                +   V R   L +T      G +L         P  +        +  +      
Sbjct: 889 IITFGLFWFVYRYNTLYVTKFRFDTGGLLF--------PRAINQLFTGLYVMELSLIGLF 940

Query: 261 SFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                V   +  +G       + +       ++++   P +
Sbjct: 941 FLVRDVDGNVACEGQAICMIVVLILTIGYQILLNEAFSPLI 981


>gi|2668499|gb|AAB88575.1| P75 [Escherichia coli]
          Length = 70

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 19/70 (27%)

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
              I   +    L P L    + L  L     +V      G  G+F    L  LI  +  
Sbjct: 1   MYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIH 60

Query: 344 ESIMAIKENK 353
                    +
Sbjct: 61  AWPDGQIAQE 70


>gi|227113502|ref|ZP_03827158.1| hypothetical protein PcarbP_11087 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 336

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/341 (11%), Positives = 92/341 (26%), Gaps = 12/341 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGF-TSWPIYSSFISKKEESSTFLA 63
           +LN +        FI+   L  L         A  + +     +   F            
Sbjct: 3   LLNLKQARLLSFFFIMGGLLILLPLRLLACFIAGFLVYEIVNLLTPYFQRVISGKR--AR 60

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            I    +  L +  L  LF   +  + + +      N     +   +           L 
Sbjct: 61  WIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIGYILNDIQQQIVHYLPGYLP 120

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                    L    +  +    +  + +      +  L   +    + +       +   
Sbjct: 121 VSIEELQHELLQWVQAHIV--MLQNMGKSFLHGFVTMLIGMVLGAIVSLYNVDKDTEKPL 178

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +  +L      L  ++   +   V     +T L          ++         +P    
Sbjct: 179 LKAELLRRVSLLSASFRNIVFAQVKISAVNTVLS------AIFILGALPLCGVHLPFAKT 232

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           L V+T +  ++P    +   ++     +  ++  A    ++  +        L   +VG 
Sbjct: 233 LVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIALVALVYLMLIHKFE-YFLNAQIVGT 291

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
            IK         ++      GL G+   P+  A +    KE
Sbjct: 292 RIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLKSELKE 332


>gi|58697526|ref|ZP_00372779.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536004|gb|EAL59704.1| conserved hypothetical protein [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 173

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 59/173 (34%), Gaps = 1/173 (0%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFY 83
           L+ ++    P L +++I +   P+   F   +    +   +   + ++  FI+ + F+  
Sbjct: 2   LFLMRPMIFPCLISVVIAYLFNPLVVKFEKYR-IPRSCSVIFIILILLIAFILVITFVLP 60

Query: 84  YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKT 143
              +++  +++ +V                   +   +    HLS   +    +      
Sbjct: 61  IIYVQITSILNFLVSKVPSLKLKVIPSVLEFLNIKIEDSLFDHLSKNLAENYSNYVSYFM 120

Query: 144 NGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLF 196
           N +D    F  +      +    ++   +  F+  RD   I ++   L    +
Sbjct: 121 NALDIASNFIIQVLSSSFNTVSLMVITPVVFFYILRDWPLIIEKASKLIPIPY 173


>gi|282167152|gb|ADA81168.1| Phage tail length tape-measure protein [Staphylococcus phage
           SAP090B]
          Length = 1549

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 101/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L      + +  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKASGLFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+ G+  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWGVIKGI 821


>gi|148380383|ref|YP_001254924.1| membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|153933187|ref|YP_001384602.1| hypothetical protein CLB_2291 [Clostridium botulinum A str. ATCC
           19397]
 gi|153937361|ref|YP_001388118.1| hypothetical protein CLC_2274 [Clostridium botulinum A str. Hall]
 gi|148289867|emb|CAL83975.1| putative membrane protein [Clostridium botulinum A str. ATCC 3502]
 gi|152929231|gb|ABS34731.1| putative membrane protein [Clostridium botulinum A str. ATCC 19397]
 gi|152933275|gb|ABS38774.1| putative membrane protein [Clostridium botulinum A str. Hall]
          Length = 326

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 96/296 (32%), Gaps = 19/296 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL     
Sbjct: 28  VKNYFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVG--- 83

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                          + + + +             +   +     +  I ++     +  
Sbjct: 84  -----------NFIYNNLILLKGYYHNFKTEIDCFIGDINKMLNMNKHIFNKNLNNVDAT 132

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                F  +      ++  +     ++++F   D + I + +            K     
Sbjct: 133 LLNVDFFRKGASYTTEWIFAYFIASLSIYFILVDKYVILENIKKYIGSNEFEKIKDKIYK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + ++I+        + I   L       +  + +++ LGV+  I+ ++P    +      
Sbjct: 193 LKEIIKIEC----FLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPL 248

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           I        +      +   + L I  + L    +   ++LP L     +  G + 
Sbjct: 249 ILYQFYTKNYIIFLGLICLYLLLIITRQILETKFMSSKLQLPALAIIISIYIGFKI 304


>gi|253702688|ref|YP_003023877.1| hypothetical protein GM21_4104 [Geobacter sp. M21]
 gi|251777538|gb|ACT20119.1| conserved hypothetical protein [Geobacter sp. M21]
          Length = 328

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/331 (10%), Positives = 93/331 (28%), Gaps = 17/331 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++  + V +           + L +   +         +    +  +A+   +  +   +
Sbjct: 9   LLAALSVPVVLHFHLLPAAFAGLAVYVLTAKFAPMLPLRWGSLTQKVALAGIILFVIALV 68

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
             +    +  +     + + + +A +    + R L          E  T  L        
Sbjct: 69  SSICLGLWSFLRGHHGMANLLNMAAETLENLKRTL---------PEDLTAALPDTVEELR 119

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
              T +       I          F    L ++   +A+   +            L    
Sbjct: 120 EQITNMLREHGRNISSVGISGVKTFAHLVLGMVVGSLAVLHRFNKENGFPPLASDL---- 175

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAM 253
             A    ++    KV+ +      +  +   + L     + G+  P    L ++T +  +
Sbjct: 176 -HARLINLADSFDKVVFAQVKISALNTVLTAIYLALVLPIFGIYLPMVTLLVLLTFVAGL 234

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +      + + +  +         +  +   +        +VGG +K       
Sbjct: 235 LPVVGNLISNFTIVLISLGVSPMVGVASLAFLIVIHKLE-YFTNARIVGGEVKASVWELL 293

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             ++      G+ GL   PV+ A +    K 
Sbjct: 294 CAMLFMEAIFGMAGLVAAPVVYAWLKAELKA 324


>gi|226949780|ref|YP_002804871.1| hypothetical protein CLM_2720 [Clostridium botulinum A2 str. Kyoto]
 gi|226841806|gb|ACO84472.1| putative membrane protein [Clostridium botulinum A2 str. Kyoto]
          Length = 326

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 96/296 (32%), Gaps = 19/296 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL     
Sbjct: 28  VKNYFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVG--- 83

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                          + + + +             +   +     +  I ++     +  
Sbjct: 84  -----------NFIYNNLILLKGYYHNFKTEIDCFIGDINKMLNMNKHIFNKNLNNVDAT 132

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                F  +      ++  +     ++++F   D + I + +            K     
Sbjct: 133 LLNVDFFRKGASYTTEWIFAYFIASLSIYFILVDKYVILENIKKYIGSNEFEKIKDKIYK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + ++I+        + I   L       +  + +++ LGV+  I+ ++P    +      
Sbjct: 193 LKEIIKIEC----FLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPL 248

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           I        +      +   + L I  + L    +   ++LP L     L  G + 
Sbjct: 249 ILYQFYTKNYIIFLGLICLYLLLIITRQILETKFMSSKLQLPALAIIISLYIGFKI 304


>gi|289675610|ref|ZP_06496500.1| hypothetical protein PsyrpsF_20231 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 311

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 78/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ L  +       + + E +   + +                      
Sbjct: 35  RWLAVALLGTLVVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRA---------RGQ 85

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   +S        +  +         +F+   + ++   I      
Sbjct: 86  LPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQRI 145

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +      +L           +SR    ++ +      +      + L     L G+
Sbjct: 146 SDVHARKPLAAALF-----DRLHLVSRAFRNIVFAQIKISLLNTAFTSVFLAIVLPLCGI 200

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 201 HLPLTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFL 259

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 260 NARIVGGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 303


>gi|317035059|ref|XP_001400991.2| hypothetical protein ANI_1_1376124 [Aspergillus niger CBS 513.88]
          Length = 903

 Score = 48.4 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 77/281 (27%), Gaps = 15/281 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IATVSVMCLFIVPLLF 80
             L  +      VL ++++     PI    ++K   + +  AV + T +    F V  +F
Sbjct: 469 WILGVITSLLPTVLMSVLMALL--PIVLRLMAKFGGAPSLAAVELTTQNFYFAFEVIQVF 526

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          +V+K++        +           + S +  + LS      +     
Sbjct: 527 LVVTISSSASSVVTKIINNPTSAASLLAENIPTASNFYISYIILQGLSFSAGALLQISGL 586

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +     R           + +  +   F      +I     +     F    
Sbjct: 587 ILGKVLGRLLDNTPRKMYSRWSNLAGLGWGTVYPVFTLLAVIAIVYSCIAPLVLGFATIG 646

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +     +          I   G+  V G  +   G             + M+     +
Sbjct: 647 LYLFYFAYRYNMLYVSNANIDTQGKAYVQGLKHLTVG-----------CYLLMVCLIG-L 694

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                +   +  G +     L ++  +    ++  L P + 
Sbjct: 695 FAIGTAADNIATGPLVLMIILLVFCVLYHVALNNALEPLIQ 735


>gi|253687091|ref|YP_003016281.1| hypothetical protein PC1_0690 [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251753669|gb|ACT11745.1| conserved hypothetical protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 336

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/342 (10%), Positives = 95/342 (27%), Gaps = 11/342 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   Q  +      +  + +       A  ++  ++      +   F           
Sbjct: 2   QLLNLKQARLLSFFFIMGGLLILLPLRLLACFIAGFLVYEIVNLLTPYFQRVISGKR--A 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I    +  L +  L  LF   +  + + +      N     +   +           L
Sbjct: 60  RWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIGYILNDIQQQVAHYLPGYL 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                   + L    +  +    +  + +      +  L   +    + +       +  
Sbjct: 120 PVSIEELQRELLQWVQAHIV--MLQNMGKSFLHGFVTMLIGMVLGAIVSLYNVDQDTEKP 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L      L  ++   +   V   + +T L          ++         +P   
Sbjct: 178 LLKAELLRRVTLLSASFRNIVFAQVKISVVNTVLS------AIFILGALPLCGIHLPFAK 231

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+T +  ++P    +   ++     +  ++  A    ++  +   +    L   +VG
Sbjct: 232 TLVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIALVALVYLMLIHKLE-YFLNAQIVG 290

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IK         ++      GL G+   P+  A +    KE
Sbjct: 291 TRIKAHAWEILLAMLVFEAAFGLAGVIAAPIYYAYLKSELKE 332


>gi|224827305|ref|ZP_03700397.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
 gi|224600480|gb|EEG06671.1| conserved hypothetical protein [Lutiella nitroferrum 2002]
          Length = 339

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 3/144 (2%)

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT--AIMAMIPGGAPI 260
           ++    KV+ +      + A    L LG A  LAG P  +   +I    ++ ++P    +
Sbjct: 193 LAASFRKVVFAQVRIAALNAFLTWLFLGVALPLAGTPLPLTKTLIAITFLVGLLPVIGNL 252

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               + + + +  ++  A    ++  +   +    L   +VG  I+         ++   
Sbjct: 253 ISNTMIVVVAMSQSLGLAVAALVFLVVIHKLE-YFLNARIVGSRIQARSWEILLAMIVLE 311

Query: 321 RTMGLLGLFIGPVLMALIAVIWKE 344
              GL G+   P+  A +    K 
Sbjct: 312 AVFGLPGVIAAPIYYAYLKAELKA 335


>gi|170754604|ref|YP_001781970.1| hypothetical protein CLD_2213 [Clostridium botulinum B1 str. Okra]
 gi|169119816|gb|ACA43652.1| putative membrane protein [Clostridium botulinum B1 str. Okra]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 96/296 (32%), Gaps = 19/296 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL     
Sbjct: 28  VKNYFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVG--- 83

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                          + + + +             +   +     +  I ++     +  
Sbjct: 84  -----------NFIYNNLILLKGYYHNFKTEIDCFIGDINKVLNMNKHIFNKNLNNVDAT 132

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                F  +      ++  +     ++++F   D + I + +            K     
Sbjct: 133 LLNVDFFRKGASYTTEWIFAYFIASLSIYFILVDKYVILENIKKYIGSNEFEKIKDKIYK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + ++I+        + I   L       +  + +++ LGV+  I+ ++P    +      
Sbjct: 193 LKEIIKIEC----FLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPL 248

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           I        +      +   + L I  + L    +   ++LP L     +  G + 
Sbjct: 249 ILYQFYTKNYIIFLGLICLYLLLIITRQILETKFMSSKLQLPALAIIISIYIGFKI 304


>gi|238028646|ref|YP_002912877.1| hypothetical protein bglu_1g31100 [Burkholderia glumae BGR1]
 gi|237877840|gb|ACR30173.1| Putative membrane protein [Burkholderia glumae BGR1]
          Length = 361

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 82/285 (28%), Gaps = 10/285 (3%)

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           +  SS     ++ V +  + +  L  L    +  ++  V  +       + +        
Sbjct: 78  RHMSSGRARWLSVVLLSVVIVGGLAGLTAAIIDHVEHTVPNLQGLMGQMMQLIDQARGRV 137

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIAL 174
            G          L    +   +  T L +  +D +         IF      +I   +  
Sbjct: 138 PG-----WVANVLPVDATQMKVKATGLMSKHMDQLQAGGKSAARIFGHVLFGMIIGAMIA 192

Query: 175 FFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYW 234
               R           L      A   +        I +     T + +    +      
Sbjct: 193 IGADRSKTRRPLSTALLARVAMFAEAFRRIVFAQIKISAINAAFTAVYL----LAVLPIV 248

Query: 235 LAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
              +P    L ++T I+ ++P    +   ++ + + +   +  A     +  +   +   
Sbjct: 249 HVQMPLGKTLVLVTFIVGLMPVIGNLISNSLIVAISLSVGVGTALASLTFLILIHKLE-Y 307

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            L   ++GG I+         ++      G+ G+   P+  A + 
Sbjct: 308 FLNARIIGGQIESRAWELLLAMLVMEAAFGVPGVIAAPIFYAYLK 352


>gi|134081669|emb|CAK46603.1| unnamed protein product [Aspergillus niger]
          Length = 895

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 77/281 (27%), Gaps = 15/281 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV-IATVSVMCLFIVPLLF 80
             L  +      VL ++++     PI    ++K   + +  AV + T +    F V  +F
Sbjct: 461 WILGVITSLLPTVLMSVLMALL--PIVLRLMAKFGGAPSLAAVELTTQNFYFAFEVIQVF 518

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          +V+K++        +           + S +  + LS      +     
Sbjct: 519 LVVTISSSASSVVTKIINNPTSAASLLAENIPTASNFYISYIILQGLSFSAGALLQISGL 578

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +     R           + +  +   F      +I     +     F    
Sbjct: 579 ILGKVLGRLLDNTPRKMYSRWSNLAGLGWGTVYPVFTLLAVIAIVYSCIAPLVLGFATIG 638

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +     +          I   G+  V G  +   G             + M+     +
Sbjct: 639 LYLFYFAYRYNMLYVSNANIDTQGKAYVQGLKHLTVG-----------CYLLMVCLIG-L 686

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                +   +  G +     L ++  +    ++  L P + 
Sbjct: 687 FAIGTAADNIATGPLVLMIILLVFCVLYHVALNNALEPLIQ 727


>gi|21283624|ref|NP_646712.1| hypothetical protein MW1895 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486771|ref|YP_043992.1| hypothetical protein SAS1878 [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|300912955|ref|ZP_07130393.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus TCH70]
 gi|21205065|dbj|BAB95760.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
 gi|49245214|emb|CAG43684.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|300885733|gb|EFK80940.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus TCH70]
          Length = 1549

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 100/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L      + +  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKASGLFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNLAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G +  I+  I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGALNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+ G+  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWGVIKGI 821


>gi|70951954|ref|XP_745178.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56525419|emb|CAH74887.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
          Length = 635

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 5/201 (2%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F       F M   D  +  +    AL++      S+   L  L   + P+        +
Sbjct: 373 FFVLIFLNFFMFTFDAIIQAMIFFTALYYLILSKKSLLNYLKDLLLVVDPSSI--FFYNI 430

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            K +++  +          + +   +     P      ++  I+++IP  +P     + +
Sbjct: 431 TKSLKAIIICTLKRIYFYTMYIWLIFSFFQFPIIYVPTLMCMILSLIPVISPEILILIIV 490

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L          + L+    +++        +      +        L   + T G  G
Sbjct: 491 IHLWIIQKQKIISIILFVVFFIYL---YFTTTIYTEIPYIHAWLVSLSLFLSITTFGSKG 547

Query: 328 LFIGPVLMALIAVIWKESIMA 348
           + +GP + ++  +I + ++  
Sbjct: 548 VILGPFIASIPLIIHQIAVTQ 568


>gi|328479454|gb|EGF48731.1| membrane protein [Lactobacillus rhamnosus MTCC 5462]
          Length = 90

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 22/60 (36%)

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
             + P ++G  + +  L   + L+      GLLG  +     A+I  +        +  +
Sbjct: 3   NFIYPNVIGRSLDIHPLTIIYLLMVAGNLWGLLGTILAVPTYAVIKTVITYLYELYRFTR 62


>gi|168180693|ref|ZP_02615357.1| putative membrane protein [Clostridium botulinum NCTC 2916]
 gi|182668619|gb|EDT80598.1| putative membrane protein [Clostridium botulinum NCTC 2916]
          Length = 326

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 96/296 (32%), Gaps = 19/296 (6%)

Query: 27  LKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGM 86
           +K +F P    L++ F   PIY    +K   +++  ++I+ + V  +  + L+FL     
Sbjct: 28  VKNYFKPFFIILVLLFLCNPIYDFLCNKNIFNNSVNSIISIILVNIILFL-LIFLVG--- 83

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
                          + + + +             +   +     +  I ++     +  
Sbjct: 84  -----------NFIYNNLILLKGYYHNFKTEIDCFIGDINKMLNMNKHIFNKNLNNVDAT 132

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                F  +      ++  +     ++++F   D + I + +            K     
Sbjct: 133 LLNVDFFRKGASYTTEWIFAYFIASLSIYFILVDKYVILENIKKYIGSNEFEKIKDKIYK 192

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           + ++I+        + I   L       +  + +++ LGV+  I+ ++P    +      
Sbjct: 193 LKEIIKIEC----FLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPL 248

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
           I        +      +   + L I  + L    +   ++LP L     +  G + 
Sbjct: 249 ILYQFYTKNYIIFLGLICLYLLLIITRQILETKFMSSKLQLPALAIIISIYIGFKI 304


>gi|50119758|ref|YP_048925.1| hypothetical protein ECA0815 [Pectobacterium atrosepticum SCRI1043]
 gi|49610284|emb|CAG73728.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 336

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/342 (9%), Positives = 91/342 (26%), Gaps = 11/342 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   Q  +      +  + +          ++  ++      +   F           
Sbjct: 2   QLLNLKQARLLSFFFIMGGLFILLPLRLLTCFIAGFLVYEIVNLLTPYFQRVISGKR--A 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I    +  L +  L  LF   +  + + +      N     +   +           L
Sbjct: 60  RWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNIRIGYILNDIQQQIIHYLPGYL 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                          +  +    +  + R      +  L   +    + +       +  
Sbjct: 120 PVSIEELQHEFLQWVQAHIV--MLQNMGRSFLHGFVTMLIGMVLGAIVSLYNVDPDTEKP 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L      L  ++   +   V     +T L          ++         +P   
Sbjct: 178 LLKAELLRRVSLLSASFRNIVFAQVKISAVNTSLS------AIFILGALPLCGIHLPFAK 231

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+T +  ++P    +   ++     +  ++  A    ++  +   +    L   +VG
Sbjct: 232 TLVVLTFVFGLLPVIGNLISNSIVFLSGLSLSLPIALVALVYLMLIHKLE-YFLNAQIVG 290

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IK         ++      GL G+   P+  A +    KE
Sbjct: 291 TRIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLKSELKE 332


>gi|207739683|ref|YP_002258076.1| permease transmembrane protein [Ralstonia solanacearum IPO1609]
 gi|206593065|emb|CAQ59971.1| putative permease transmembrane protein [Ralstonia solanacearum
           IPO1609]
          Length = 271

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 1/117 (0%)

Query: 223 IGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF 282
               L+         VP   +L ++T +  +IP    +      + + +  ++  A    
Sbjct: 146 AAIYLMGVVPALGLHVPYSKSLVLLTFVAGLIPVAGNLISNTAIVLMSVAVSLELAVGSL 205

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            +  I   +    +   ++G  I          L+      G+ G+   PVL A + 
Sbjct: 206 AFLVIVHKLE-YFVNARIIGSRIDARAWELILALIVMEALFGVGGVIAAPVLYAYLK 261


>gi|326941043|gb|AEA16939.1| hypothetical protein CT43_CH3272 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 149

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 1/115 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
             ++   I F+    + FLK  F PVL A ++ +   P  S    K   S         +
Sbjct: 34  NILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKK-GVSRIVSIASIYL 92

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            V+ LF+  ++ +      ++  L+  +           R   +        E +
Sbjct: 93  IVLGLFVFLVVTVIPIIKDQIDALIDNLPYFGHEIEQAARRFGESNLLGKIQENF 147


>gi|26991530|ref|NP_746955.1| hypothetical protein PP_4850 [Pseudomonas putida KT2440]
 gi|24986613|gb|AAN70419.1|AE016683_10 membrane protein, putative [Pseudomonas putida KT2440]
          Length = 355

 Score = 48.1 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 79/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+    + +   F + + E +   + +                      
Sbjct: 79  RWLAVALLGTLVVSTLTLLIAGAFSFLLHEAENPGASLDKFMALVERA---------RSQ 129

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++      + +  +         +F+   + +I   I      
Sbjct: 130 LPPFIEGYLPASAAEFKVAIGDWIKSHLSDLQLVGKGMAHMFVTMLIGMILGAIIALQRI 189

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +  I  G+ L     L  V
Sbjct: 190 PDISRRKPLAAALF-----ERLSLLVKAFRNIVFAQIKISLLNTIFTGIFLAVVMPLFDV 244

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   I    L
Sbjct: 245 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAAAALGYLVVIHKIE-YFL 303

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 304 NARIVGGQISAKAWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 347


>gi|239507410|ref|YP_002939721.1| tail length tape measure protein [Staphylococcus phage
           phiPVL-CN125]
 gi|238684035|gb|ACR54238.1| tail length tape measure protein [Staphylococcus phage
           phiPVL-CN125]
          Length = 1440

 Score = 47.7 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 101/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L      + +  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKASGLFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKAIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+ G+  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWGVIKGI 821


>gi|302509606|ref|XP_003016763.1| hypothetical protein ARB_05056 [Arthroderma benhamiae CBS 112371]
 gi|291180333|gb|EFE36118.1| hypothetical protein ARB_05056 [Arthroderma benhamiae CBS 112371]
          Length = 1026

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/279 (7%), Positives = 67/279 (24%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  ++++     P+        +   +     +   +    F+   +F
Sbjct: 532 WLISAIQGILPPLFLSILMALL--PLVLRFLSRNQGVHTGMAIELTVQNYYFAFLFVQIF 589

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +         +           + S +  + +S      +     
Sbjct: 590 LVVSISSGFSTIIDSLKNVL-SVPDLLAQNIPKASNYFFSYMVLQAMSVSAGALVQIFAL 648

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 649 ISWFILAPLLDNTARKKWARATNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 708

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +  +V +              G            G+       +    +       + 
Sbjct: 709 FSLFWVVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMEICLIGMFFLVRDEKKEVA 768

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V I  ++     N     L   + + + D
Sbjct: 769 CEGQAICMIIVLILTILFQYFLNEAFNPLSLYLPITLED 807


>gi|303312219|ref|XP_003066121.1| hypothetical protein CPC735_053460 [Coccidioides posadasii C735
           delta SOWgp]
 gi|240105783|gb|EER23976.1| hypothetical protein CPC735_053460 [Coccidioides posadasii C735
           delta SOWgp]
 gi|320040111|gb|EFW22045.1| hypothetical protein CPSG_02202 [Coccidioides posadasii str.
           Silveira]
          Length = 1198

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/280 (8%), Positives = 68/280 (24%), Gaps = 14/280 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             L  ++G   P+  ++++     P+        +   +     +   +    F+   LF
Sbjct: 712 WLLSAIQGILPPLFLSILMALL--PLMLRFLSKNQGVHTGMAIELTVQNYFFAFLFVQLF 769

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          + + +         +           + S +  + +S      +     
Sbjct: 770 LVVSISSGFSTIFNSIKD-VTSVPELLATNIPKSSNYFFSYMVLQAMSVSAGALVQIFNL 828

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 829 VSWFILAPIFDSTARMKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLIMIFNVLT 888

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  +V +              G            GV       +    +     G   
Sbjct: 889 FTLFWVVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGVYVMEICLIGMFFLVRDEKG--- 945

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                   +  +G       L +   +  F++++  +P  
Sbjct: 946 -------EVACEGQAICMIVLLIATILFQFLLNRAFQPLF 978


>gi|254522905|ref|ZP_05134960.1| hypothetical protein SSKA14_2037 [Stenotrophomonas sp. SKA14]
 gi|219720496|gb|EED39021.1| hypothetical protein SSKA14_2037 [Stenotrophomonas sp. SKA14]
          Length = 321

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/321 (10%), Positives = 91/321 (28%), Gaps = 11/321 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           ++ + L    G    +LS L++   +  + S+   +          +  +S + +  + L
Sbjct: 3   LLGMWLALKLGLVVTLLSGLLVFQLTHLLASTVEGRLPPGRARAIAVIVLSAVIISALVL 62

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +        +             + +          +    +     +   +L   + 
Sbjct: 63  AGIG--VASFFRNETGGPDALLARLMDILNSSRHQVPALLQPYIPEDMPALRAALNDWAA 120

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
              +      +    +    + +   + ++   +   +       +      L       
Sbjct: 121 EHQRQ-----LGVAGTSVVQVGVRVLIGMVLGAMIALYDELPLPKMGPLAQELIGRTSRL 175

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
                  +  +V  S    +       G++         +P    L +IT I  ++P   
Sbjct: 176 ATAFRQVVFAQVKISLLNTVFTAIFLLGVLPLFGVH---LPLSKTLVLITFIAGLLPVVG 232

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
            I    +   + +  + + A    L+  +   +    L   +VGG I+         ++ 
Sbjct: 233 NIISNTIITIVALSVSFYVAVAALLYLIVIHKLE-YFLNARIVGGEIQARAWELLLAMLV 291

Query: 319 GVRTMGLLGLFIGPVLMALIA 339
                GL GL   PV  A + 
Sbjct: 292 MEAAFGLPGLVAAPVFYAYVK 312


>gi|309804736|ref|ZP_07698801.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
 gi|308166128|gb|EFO68346.1| conserved hypothetical protein [Lactobacillus iners LactinV 09V1-c]
          Length = 200

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 49/158 (31%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F++   L F+      V+ A +  +   PI      K         +   + V+ + I
Sbjct: 43  IAFLLTPVLTFVNAIMPAVILAGVQYYLMNPIVDCLEQKYHIPRIVTILALFIVVLIILI 102

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L      + K L+         G    R L   P            +S+ QS+  
Sbjct: 103 LIINTLLPVIEAQTKSLIDHWPSYWDSGQEALRHLLHDPRLDGIRSDLNDAVSNAQSILF 162

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            +        ++ +    +   M+ +    +   + + 
Sbjct: 163 NTGKASFNLFLENLFGAVNVISMLIVTLLTAPFILFLC 200


>gi|189423884|ref|YP_001951061.1| hypothetical protein Glov_0815 [Geobacter lovleyi SZ]
 gi|189420143|gb|ACD94541.1| conserved hypothetical protein [Geobacter lovleyi SZ]
          Length = 329

 Score = 47.7 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/338 (11%), Positives = 97/338 (28%), Gaps = 19/338 (5%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M  P  I   + +  +   LYF       V + L +   +  +           +  +A+
Sbjct: 1   MRRPVVISNLLAILAVCAVLYF--HLVPAVFAGLAVYVLTLKLARHLPRNMNRFAHRVAL 58

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
              V  +   +  +  L +  +   + + + +         +                  
Sbjct: 59  GVVVVCVISCLTSVGALIWSYVSSSQAIAALLTTVVDTLESL---------RKTLPAQIA 109

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
           + L             L       I               L ++   +A    + +   +
Sbjct: 110 EALPATIEDLHQHLVSLLGVHAQKISIVGLEGIKYLAHIILGMVVGGMAAVHHFNEHEKV 169

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHV 242
              + ++           ++    KV+ +      + A    + L  A  L G+  P   
Sbjct: 170 PPFISAM-----RTRLGNLAIAFDKVVFAQVKISGLNAALTAVYLLVALPLFGIHLPMAS 224

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L ++T  + M+P    +   +V + + +  ++       L+  +        +   +VG
Sbjct: 225 ILVLLTFAVGMLPVVGNLVSNSVIVVISLGISLGVGVASLLFLVLIHKAE-YFMNARIVG 283

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
             ++         ++      G+ GL   PV+ A +  
Sbjct: 284 HEVQATAWELLSAMLLLEAVFGIAGLVAAPVVYAWLKA 321


>gi|313610354|gb|EFR85581.1| YubA [Listeria monocytogenes FSL F2-208]
          Length = 165

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/158 (10%), Positives = 46/158 (29%), Gaps = 15/158 (9%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLIILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
              S         +    ++S          T +  + 
Sbjct: 128 DEFSRSSLFDQIKDKLNTNMSDIMKTLSTKGTSVINSA 165


>gi|312087605|ref|XP_003145537.1| hypothetical protein LOAG_09962 [Loa loa]
 gi|307759298|gb|EFO18532.1| hypothetical protein LOAG_09962 [Loa loa]
          Length = 751

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 68/244 (27%), Gaps = 15/244 (6%)

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
            W+S++      S L  + +   ++      + +  +   F     S  G +       +
Sbjct: 511 DWMSNLEVFTSISTLREEMVELIKANVDTIMS-IAQSVWSFTAGNISTLGTVLFTILAIV 569

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           I   + LF F+ +       L  L       +                 G   + I   +
Sbjct: 570 INFGLELFNFFIEITVFLTTLYYLLASSQDIWLPTKWLSDTLPPSHDTTGSARLYIIPAI 629

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
               +             V+ A+ A +P  AP          L       A  L      
Sbjct: 630 EKAISGVFVLSAKMSLFYVLAAVFASVPVIAPCFVCIFGFLELYLAEHETAAALLFLLTS 689

Query: 288 ELFIVDKTLRPFLVGGPI------KLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
                   L P +                 T   ++GG+  +GL G  IGP+L+  + V+
Sbjct: 690 --------LAPKVFADTAFYNELRGSHPYVTGLAIIGGIYWLGLQGAIIGPILLCSMIVL 741

Query: 342 WKES 345
               
Sbjct: 742 LNVY 745


>gi|293596839|ref|ZP_06684360.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
 gi|293582882|gb|EFF94914.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
          Length = 236

 Score = 47.3 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 78/249 (31%), Gaps = 18/249 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           E +       R ++  ++ + LY L+     +L   I  F    + +  + +       +
Sbjct: 5   EKLKENDTARRVLVFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPRKLI 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
            ++    V     V ++      + ++ +LV  +V    +                    
Sbjct: 65  VIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNN-----------------PSD 107

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            T        LK  +       G+DFI    S  G + L + L++I  +       R   
Sbjct: 108 NTIVKWIVGFLKESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTS 167

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
              Q + S    +F        +              +IA+    +   A +L   P  +
Sbjct: 168 FTGQFMTSKVGFIFKE-AAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLL 226

Query: 243 ALGVITAIM 251
           +L ++  ++
Sbjct: 227 SLSIMVFVL 235


>gi|327540862|gb|EGF27423.1| protein belonging to uncharacterized protein family UPF0118
           [Rhodopirellula baltica WH47]
          Length = 90

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 10/85 (11%), Positives = 27/85 (31%)

Query: 264 AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM 323
             ++ L  +        + +   +   I    + P +    ++LP        + G    
Sbjct: 1   MPALLLASQQGSTALISVLVLYLVIQTIESYLITPMVQEHQVELPPAMVILAQIIGGLVF 60

Query: 324 GLLGLFIGPVLMALIAVIWKESIMA 348
           G  G+     + A+  +  K+  + 
Sbjct: 61  GFWGIVFATPMFAVSMLWIKQIYVE 85


>gi|330943582|gb|EGH45918.1| hypothetical protein PSYPI_27824 [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330976743|gb|EGH76783.1| hypothetical protein PSYAP_08840 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 336

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 78/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ L  +       + + E +   + +                      
Sbjct: 60  RWLAVALLGTLVVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRA---------RGQ 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   +S        +  +         +F+   + ++   I      
Sbjct: 111 LPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQRI 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +      +L           +SR    ++ +      +      + L     L G+
Sbjct: 171 SDVHARKPLAAALF-----DRLHLVSRAFRNIVFAQIKISLLNTAFTSVFLAIVLPLCGI 225

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 226 HLPLTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFL 284

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 285 NARIVGGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|302767572|ref|XP_002967206.1| hypothetical protein SELMODRAFT_86640 [Selaginella moellendorffii]
 gi|300165197|gb|EFJ31805.1| hypothetical protein SELMODRAFT_86640 [Selaginella moellendorffii]
          Length = 610

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/202 (9%), Positives = 54/202 (26%), Gaps = 5/202 (2%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+    +    +        +          L++          +       L      
Sbjct: 396 GTSIAMAVGSSIASGAAGIFHFLTQAAVFFSLLYYLITSQSGGVVEQVLGMIPLSETARI 455

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           + + ++ + + S  L     A  +       +   G+       ++  + A++P      
Sbjct: 456 RSATVLNRAVSSVLLATVKSAFYQAAFTWLLFRAFGIHFLYVSTLLAIVTAVLPVFPLGV 515

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            +  +   L+    + A  +       +          +           T   + GG+ 
Sbjct: 516 ASIPAAAQLVVQGDYLAAVVLGVVHCLVLDFGN---RAIQDEIPGHNAYLTGLSIAGGMA 572

Query: 322 TMGLL--GLFIGPVLMALIAVI 341
                  G  +GP+LM ++  +
Sbjct: 573 LFSPALEGAIMGPLLMTVLTAL 594


>gi|71733881|ref|YP_276601.1| hypothetical protein PSPPH_4485 [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257483289|ref|ZP_05637330.1| hypothetical protein PsyrptA_08543 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|298488910|ref|ZP_07006934.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|71554434|gb|AAZ33645.1| membrane protein, putative [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|298156585|gb|EFH97681.1| membrane protein, putative [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|320322778|gb|EFW78871.1| hypothetical protein PsgB076_22692 [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330435|gb|EFW86414.1| hypothetical protein PsgRace4_07940 [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873961|gb|EGH08110.1| hypothetical protein Pgy4_05272 [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330888028|gb|EGH20689.1| hypothetical protein PSYMO_03988 [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330989124|gb|EGH87227.1| hypothetical protein PLA107_29155 [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012512|gb|EGH92568.1| hypothetical protein PSYTB_23131 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 336

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 82/284 (28%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ L  +    +  + + E +   + +                      
Sbjct: 60  RWLAVALLGTVVVSLLTLIFAGVISFVLHEAENPGASLDKFMTLVDRA---------RGQ 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   +S        +  +         +F+   + ++   I      
Sbjct: 111 LPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQRI 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +      +L + L+      +SR    ++ +      +      + L     L G+
Sbjct: 171 SDVHARKPLAAALFDRLY-----LVSRAFRNIVFAQIKISLLNTAFTSVFLAIVLPLCGI 225

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 226 HLPLTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFL 284

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 285 NARIVGGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|297793067|ref|XP_002864418.1| hypothetical protein ARALYDRAFT_918735 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310253|gb|EFH40677.1| hypothetical protein ARALYDRAFT_918735 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 648

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 74/219 (33%), Gaps = 7/219 (3%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
               +  I          F ++    ++F+ +       +   +++Q+ ++      A  
Sbjct: 434 GAKFVFSIGNLIISGAAEFFNFISQLMVFIWVLYILITSESGGVTEQVMNMLPINASARN 493

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +   ++   I    L    IA  +G +    + L  +       V+  I A++P     
Sbjct: 494 -RCVEVLDLAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYW 552

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T  +   L+    +    + +  ++   ++ +     +           T   ++GGV
Sbjct: 553 FATIPAALQLVLEGRY---IIAVTLSVTHLVLMEYGASEIQDDIPGSNAYITGLSIIGGV 609

Query: 321 RTM--GLLGLFIGPVLMALIAVIWKESIMAIKENKEKIS 357
                 L G  +GP++  ++  +       +  + +KI+
Sbjct: 610 TLFPSALEGAIMGPLITTVVIALKDLYAEFVLNDPKKIN 648


>gi|330969723|gb|EGH69789.1| hypothetical protein PSYAR_04443 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 336

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 78/282 (27%), Gaps = 13/282 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ L  +       + + E +   + +                      
Sbjct: 60  RWLAVALLGTLVVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRA---------RGQ 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   +S        +  +         +F+   + ++   I      
Sbjct: 111 LPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQRI 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +      +L + L+       + +  ++  S             ++         +
Sbjct: 171 SDVHARKPLAAALFDRLYLVSRAFRNIVFAQIKISLLNTAFTSVFLAVVL---PLCGIHL 227

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    L ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L  
Sbjct: 228 PLTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFLNA 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +VGG I          ++      GL G+  GP+  A +  
Sbjct: 287 RIVGGQINARSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|289625260|ref|ZP_06458214.1| hypothetical protein PsyrpaN_09042 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647786|ref|ZP_06479129.1| hypothetical protein Psyrpa2_08557 [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867095|gb|EGH01804.1| hypothetical protein PSYAE_07527 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|330870983|gb|EGH05692.1| hypothetical protein PSYAE_27768 [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 336

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 82/284 (28%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ L  +    +  + + E +   + +                      
Sbjct: 60  RWLAVALLGTVVVSLLTLIFAGVISFVLHEAENPEASLDKFMTLVDRA---------RGQ 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   +S        +  +         +F+   + ++   I      
Sbjct: 111 LPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQRI 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +      +L + L+      +SR    ++ +      +      + L     L G+
Sbjct: 171 SDVHARKPLAAALFDRLY-----LVSRAFRNIVFAQIKISLLNTAFTSVFLAIVLPLCGI 225

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 226 HLPLTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFL 284

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 285 NARIVGGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|289810746|ref|ZP_06541375.1| permease PerM [Salmonella enterica subsp. enterica serovar Typhi
           str. AG3]
          Length = 160

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/169 (8%), Positives = 50/169 (29%), Gaps = 9/169 (5%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           AP+L A+++ +      +   +    S  + A I  +  + + ++    +      +   
Sbjct: 1   APLLVAIVLAYLLEWPTARLQA-IGCSRRWAASIVLILFVGILLLMAFVVMPIAWQQGIY 59

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L+  +             L      +          +        +      N  D + +
Sbjct: 60  LIRDMPGMLNKLSDFAATLPRRYPAL--------MDAGIIDAMAENMRTRMLNMGDSVVK 111

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           ++    +  L   + ++ + + +FF  +D   +   +  +         
Sbjct: 112 YSLASLVGLLTLAVYLVLVPLMVFFLVKDKEQMLNAVRRVLPRNRGLRH 160


>gi|255018091|ref|ZP_05290217.1| hypothetical protein LmonF_10901 [Listeria monocytogenes FSL
           F2-515]
          Length = 158

 Score = 47.3 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 8/115 (6%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGF-------FAPVLSALIIGFTSWPIYSSFISKKEE 57
               + +    I+F++L   Y            F P+L A  + +   P+      + + 
Sbjct: 13  FWTIEILAVVAILFVLLQMKYIFSPIGIIVSTLFMPILVAGFLFYLFNPLVLFLEKR-KV 71

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
                 ++  ++ + L ++ ++ L      ++ EL   +    Q      + LS+
Sbjct: 72  PRLLSVIVIFIAFITLVVLAVMQLGPTLADQVAELAKAIPGYWQDFEKWLQGLSN 126


>gi|255563592|ref|XP_002522798.1| conserved hypothetical protein [Ricinus communis]
 gi|223538036|gb|EEF39649.1| conserved hypothetical protein [Ricinus communis]
          Length = 651

 Score = 46.9 bits (110), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 79/271 (29%), Gaps = 8/271 (2%)

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            +  E+ S++    +  I     L +   G               +              
Sbjct: 385 RQWGEIYSELDAIFRELIITREDLVEKAKGFALR--GMDVSQRVFASSASVLGGGAKLMF 442

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                  S    +F     S++F  +  +    +   +++Q+  +      +   +   +
Sbjct: 443 SVGNSIISGAAEVFNFVSQSMVFFWVLYYLITSESGGVTEQVMQMLPIP-KSASTRCVEV 501

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVS 266
           +   I    L    IA  +G +    + L  +       V+  I  + P       T  +
Sbjct: 502 LDNAISGVLLATAEIAFFQGCLTWLLFRLYKIHFLYVSTVLAFISPLFPIFPSWFATLPA 561

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--G 324
              L   + +    + +  +I   ++       +           T   ++GG+      
Sbjct: 562 TLQLAIESRY---IMAITLSIIHVVLMDYGASEIKEDIPGYSEYLTALSILGGMTLFPSA 618

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           + G  +GP++  ++  +       + E  +K
Sbjct: 619 VEGAIMGPLITTVVIALKDLYAEFVLEENKK 649


>gi|302754184|ref|XP_002960516.1| hypothetical protein SELMODRAFT_73510 [Selaginella moellendorffii]
 gi|300171455|gb|EFJ38055.1| hypothetical protein SELMODRAFT_73510 [Selaginella moellendorffii]
          Length = 583

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/202 (9%), Positives = 54/202 (26%), Gaps = 5/202 (2%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
            T+    +    +        +          L++          +       L      
Sbjct: 369 GTSIAMAVGSSIASGAAGIFHFLTQAAVFFSLLYYLITSQSGGVVEQVLGMIPLSETARI 428

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
           + + ++ + + S  L     A  +       +   G+       ++  + A++P      
Sbjct: 429 RSATVLNRAVSSVLLATVKSAFYQAAFTWLLFRAFGIHFLYVSTLLAIVTAVLPVFPLGV 488

Query: 262 FTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVR 321
            +  +   L+    + A  +       +          +           T   + GG+ 
Sbjct: 489 ASIPAAAQLVVQGDYLAAVVLGVVHCLVLDFGN---RAIQDEIPGHNAYLTGLSIAGGMA 545

Query: 322 TMGLL--GLFIGPVLMALIAVI 341
                  G  +GP+LM ++  +
Sbjct: 546 LFSPALEGAIMGPLLMTVLTAL 567


>gi|116694055|ref|YP_728266.1| putative permease [Ralstonia eutropha H16]
 gi|113528554|emb|CAJ94901.1| putative permease [Ralstonia eutropha H16]
          Length = 345

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/295 (10%), Positives = 76/295 (25%), Gaps = 17/295 (5%)

Query: 47  IYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPV 106
           +        +        I +  ++    +    L  +   E   L   +          
Sbjct: 57  LAPRLQRLHQRHDALAVAILSALILLGLTLAGWLLVRFVSGEGNTLDGLLNHVADIIDR- 115

Query: 107 PRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLS 166
               S      W S+   K +    +  I +                     I +   + 
Sbjct: 116 ----SRGQMPPWLSDALPKGVDELANTLIETLREHAAMAQKLGAEVLRTLVHILIGLVIG 171

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG 226
            +  +             +  +              + +   + I +     TI  +   
Sbjct: 172 AMVALYRAVVRPNRRPLAAALVARAR---------TLQQAFSQFIFAQIQISTINTVLTA 222

Query: 227 LVLGSAYWLAGVPSHVALG--VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
           + L     L GV   +     VIT +  ++P    +      +   +  ++  A    ++
Sbjct: 223 IYLLLMLPLFGVHLPLTKTLVVITFVAGLLPVLGNLISNTAIVVASLSVSLPIAVASLVF 282

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             +   +    L   ++G  I+         ++      G+ G+  GP+  A + 
Sbjct: 283 LVVIHKLE-YFLNARIIGARIQAAAWELLMVMLLMETLFGIPGVIAGPIFYAYLK 336


>gi|302188745|ref|ZP_07265418.1| hypothetical protein Psyrps6_20462 [Pseudomonas syringae pv.
           syringae 642]
 gi|330953104|gb|EGH53364.1| hypothetical protein PSYCIT7_17374 [Pseudomonas syringae Cit 7]
          Length = 336

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 81/284 (28%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ L  +       + + E +   + +                      
Sbjct: 60  RWLAVALLGTLVVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRA---------RGQ 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   +S        +  +         +F+   + ++   I      
Sbjct: 111 LPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQRI 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +      +L + L+      +SR    ++ +      +      + L     L G+
Sbjct: 171 SDVHARKPLAAALFDRLY-----LVSRAFRNIVFAQIKISLLNTAFTSVFLAIVLPLCGI 225

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 226 HLPLTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFL 284

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 285 NARIVGGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|74316069|ref|YP_313809.1| hypothetical protein Tbd_0051 [Thiobacillus denitrificans ATCC
           25259]
 gi|74055564|gb|AAZ96004.1| membrane protein, putative [Thiobacillus denitrificans ATCC 25259]
          Length = 355

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/285 (10%), Positives = 83/285 (29%), Gaps = 21/285 (7%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLE--MKELVSKVVLANQHGIPVPRWLSDIPGG 116
              +  + T+ V+         +  Y   E  +  L+SK+    ++   +    +     
Sbjct: 79  KVLVVSLITLIVLGFLGGASAAVILYLRTEGGLAGLLSKMAEIIENSRELLPLWAAAWLP 138

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
                +  + L     +       L  +    +  F     +                  
Sbjct: 139 QGDESVIRQALVDWLRVHAQDIRKLSGDAGRGLLNFIIGMIIGSFVAL------------ 186

Query: 177 FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLA 236
                 +  ++  +           ++     +V+ +      + A+  G+ L       
Sbjct: 187 ----REARPRRSLAPLAEAMYERVNRLGEAFRRVVFAQVRISALNALLTGIYLVVVLPAF 242

Query: 237 GVPSHVALGVI--TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDK 294
           GV       +I  T ++ ++P    +    V + + +  ++  A    L+  +   +   
Sbjct: 243 GVHLTFTKTMIVVTFLVGLLPVLGNLISNTVIVVISLSHSLEVAASSLLFLVLIHKLE-Y 301

Query: 295 TLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            +   ++GG I+         ++      GL G+   P+  A I 
Sbjct: 302 FVNARIIGGQIQARAWELLIAMLVMEAAFGLQGVVAAPIFYAYIK 346


>gi|66047669|ref|YP_237510.1| hypothetical protein Psyr_4442 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258376|gb|AAY39472.1| membrane protein, putative [Pseudomonas syringae pv. syringae
           B728a]
          Length = 336

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 78/282 (27%), Gaps = 13/282 (4%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ L  +       + + E +   + +                      
Sbjct: 60  RWLAVALLGTLVVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRA---------RGQ 110

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   +S        +  +         +F+   + ++   I      
Sbjct: 111 LPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQRI 170

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D  +      +L + L+       + +  ++  S             ++         +
Sbjct: 171 SDVHARKPLAAALFDRLYLVSRAFRNIVFAQIKISLLNTAFTSVFLAVVL---PLCGIHL 227

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P    L ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L  
Sbjct: 228 PLTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFLNA 286

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            +VGG I          ++      GL G+  GP+  A +  
Sbjct: 287 RIVGGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|302665537|ref|XP_003024378.1| hypothetical protein TRV_01444 [Trichophyton verrucosum HKI 0517]
 gi|291188430|gb|EFE43767.1| hypothetical protein TRV_01444 [Trichophyton verrucosum HKI 0517]
          Length = 1132

 Score = 46.9 bits (110), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/279 (7%), Positives = 67/279 (24%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  ++++     P+        +   +     +   +    F+   +F
Sbjct: 638 WLISAIQGILPPLFLSILMALL--PLVLRFLSRNQGVHTGMAIELTVQNYYFAFLFVQIF 695

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +         +           + S +  + +S      +     
Sbjct: 696 LVVSISSGFSTIIDSLKNVL-SVPDLLAQNIPKASNYFFSYMVLQAMSVSAGALVQIFAL 754

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 755 ISWFILAPLLDNTARKKWARATNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 814

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +  +V +              G            G+       +    +       + 
Sbjct: 815 FSLFWVVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMEICLIGMFFLVRDEKKEVA 874

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V I  ++     N     L   + + + D
Sbjct: 875 CEGQAICMIIVLILTILFQYFLNEAFNPLSLYLPITLED 913


>gi|327303082|ref|XP_003236233.1| hypothetical protein TERG_03282 [Trichophyton rubrum CBS 118892]
 gi|326461575|gb|EGD87028.1| hypothetical protein TERG_03282 [Trichophyton rubrum CBS 118892]
          Length = 1129

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/279 (7%), Positives = 67/279 (24%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  ++++     P+        +   +     +   +    F+   +F
Sbjct: 635 WLISAIQGILPPLFLSILMALL--PLVLRFLSRNQGVHTGMAIELTVQNYYFAFLFVQIF 692

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +         +           + S +  + +S      +     
Sbjct: 693 LVVSISSGFSTIIDSLKNVL-SVPDLLAQNIPKASNYFFSYMVLQAMSVSAGALVQIFAL 751

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 752 ISWFILAPLLDNTARKKWARATNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 811

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +  +V +              G            G+       +    +       + 
Sbjct: 812 FSLFWVVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMEICLIGMFFLVRDEKKEVA 871

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V I  ++     N     L   + + + D
Sbjct: 872 CEGQAICMIIVLILTILFQYFLNEAFNPLSLYLPITLED 910


>gi|261820244|ref|YP_003258350.1| hypothetical protein Pecwa_0925 [Pectobacterium wasabiae WPP163]
 gi|261604257|gb|ACX86743.1| conserved hypothetical protein [Pectobacterium wasabiae WPP163]
          Length = 336

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/342 (10%), Positives = 93/342 (27%), Gaps = 11/342 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           + +   Q  +      +  + +       A  ++  ++      +   F           
Sbjct: 2   QLLNLKQARLLSFFFIMGGLFILLPLRLLACFIAGFLVYEIVNLLTPYFQRVISGKR--A 59

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             I    +  L +  L  LF   +  + + +      N     +   +           L
Sbjct: 60  RWIVVAVISTLVVSLLSLLFGSLVGLLMQEMKDTAAFNVRIGYILNDIQQQIVHYLPGYL 119

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
                     L    +  +    +  + +      +  L   +    + +       +  
Sbjct: 120 PVSIEELQHELLQWVQAHIV--MLQNMGKSFLHGFVTMLIGMVLGAIVSLYNVDQDTEKP 177

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +  +L      L  ++   +   V     +T L          ++     +   +P   
Sbjct: 178 LLKTELLRRVSLLSASFRNIVFAQVKISAVNTVLS------AIFILGALPLFGVHLPFAK 231

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVG 302
            L V+T I  ++P    +   ++     +  ++  A    ++  +        L   +VG
Sbjct: 232 TLVVLTFIFGLLPVIGNLISNSIVFLSGLSLSLPIALVALVYLMLIHKFE-YFLNAQIVG 290

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             IK         ++      GL G+   P+  A +    KE
Sbjct: 291 TRIKAHAWEILLAMLVFEAAFGLSGVIAAPIYYAYLKSELKE 332


>gi|313608815|gb|EFR84615.1| membrane protein YdbI [Listeria monocytogenes FSL F2-208]
          Length = 120

 Score = 46.5 bits (109), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 242 VALGVITAIMAMIPGGAPISF-TAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           + L ++  ++ +IP    I     ++I     G +     + +   I   +    L P L
Sbjct: 1   MTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHALESYVLNPKL 60

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +     LP   TF  L+ G    G+ GL +G  ++     + 
Sbjct: 61  MSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVL 102


>gi|326471315|gb|EGD95324.1| hypothetical protein TESG_02810 [Trichophyton tonsurans CBS 112818]
          Length = 1114

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/279 (7%), Positives = 66/279 (23%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  ++++     P+        +   +     +   +    F+   +F
Sbjct: 620 WLISAIQGILPPLFLSILMALL--PLVLRFLSRNQGVHTGMAIELTVQNYYFAFLFVQIF 677

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +         +           + S +  + +S      +     
Sbjct: 678 LVVSISSGFSTIIDSLKNVL-SVPDLLAQNIPKASNYFFSYMVLQAMSVSAGALVQIFAL 736

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 737 ISWFILAPLLDNTARKKWARATNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 796

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +  IV +              G            G+       +    +       + 
Sbjct: 797 FSLFWIVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMEICLIGMFFLVRDEKKEVA 856

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V I   +     N     L   + + + D
Sbjct: 857 CEGQAICMIIVLILTGLFQYFLNEAFNPLSLYLPITLED 895


>gi|330960045|gb|EGH60305.1| hypothetical protein PMA4326_15919 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 336

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 82/279 (29%), Gaps = 9/279 (3%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A   +  + +  L  +F   +  +         +    + +             + 
Sbjct: 59  ARWLAVALLGTIVVSLLTLIFAGVISFVLHEAENPGASLDKFMVLVDRARGQLPPFIDAY 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L         SL    +  +    +  I + A+   +  L   +    + +         
Sbjct: 119 LPASAAEFRVSLGQWLQKHVGE--LQLIGKGAAHMFVTMLIGMVLGAIIALQRISADHVR 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  L      L  A+   +   +   + +T      +AI              +P  
Sbjct: 177 KPLAAALFDRLYLLSRAFRNIVFAQIKISLLNTAFTSVFLAIV------LPLCGIHLPLT 230

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L   +V
Sbjct: 231 KTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFLNARIV 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           GG I          ++      GL G+  GP+  A +  
Sbjct: 290 GGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|261884837|ref|ZP_06008876.1| transport protein [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 92

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/75 (16%), Positives = 29/75 (38%)

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
           L+  ++ +   L +   +    +   + P  +G  + +  L     L+     +G+ G+F
Sbjct: 2   LLVNDLSDTLWLSIIYLVVNISIGNFIEPKFLGAGLGISTLVVILSLLFWGFLLGIGGMF 61

Query: 330 IGPVLMALIAVIWKE 344
           +   L   I +   E
Sbjct: 62  LAVPLTMSIKIALNE 76


>gi|121698859|ref|XP_001267830.1| DUF221 domain protein, putative [Aspergillus clavatus NRRL 1]
 gi|119395972|gb|EAW06404.1| DUF221 domain protein, putative [Aspergillus clavatus NRRL 1]
          Length = 1204

 Score = 46.1 bits (108), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/280 (7%), Positives = 67/280 (23%), Gaps = 14/280 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  A+++     P+        +   +     +   +    F+   LF
Sbjct: 713 WLISAIQGILPPLFLAILMALL--PLILRFLCRAQGAHTGMAIELTVQNYYFAFLFVQLF 770

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  V         +           + S +  + LS      +     
Sbjct: 771 LVVAISSSFSTIIDNVTN-VTSWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIFGL 829

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + +    +F    
Sbjct: 830 VSWFILAPLLDTTARKKWGRTTNLNQMQWGTFFPIYTTLASIGLIYCVIAPLILVFNIVT 889

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +   V +              G            G+       +    +         
Sbjct: 890 FGLFWFVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGIYVMELSLIGLFFLVRD------ 943

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
               V+  +  +G       + +      F++++   P +
Sbjct: 944 ----VNGNVACEGQAICMIVVLVLTIGYQFLLNEAFSPLI 979


>gi|257095299|ref|YP_003168940.1| hypothetical protein CAP2UW1_3761 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047823|gb|ACV37011.1| conserved hypothetical protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 340

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/326 (9%), Positives = 84/326 (25%), Gaps = 16/326 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGF-TSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           +  +   +  +     P L A ++ +     +   F      +      +  V ++ +  
Sbjct: 19  ILAVAAMVTVISIHLLPALIAGLLVYELVHVLAPLFSRHLSNARARGLAVGLVVLVVVGA 78

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           V    L     +  +               +            A  L     +  +    
Sbjct: 79  VTGAVLGVLAFMGSEG--GSFAALLAKMAEIIETSRSTLPAWLADLLPRDVEALRERASH 136

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                              +       + L+ + + + +          +          
Sbjct: 137 WLREHAAE----------LQLIGKETGHMLAHVLIGMVIGGMVSLREGAASGTSGPLALA 186

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI--TAIMAM 253
                 ++     +V+ +      +  +   L LG    L GV   +   +I  T +  +
Sbjct: 187 LAERIFRLGEAFRRVVFAQVRISALNTLFTALYLGVLLPLFGVHLPLTKTMIVVTFLAGL 246

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   +V   + +  +   A     +  +   +    L   +VG  I+       
Sbjct: 247 LPVVGNLISNSVIFVVSLAHSPGVAISSLAFLVVIHKLE-YFLNARIVGAQIRASAWELL 305

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++      GL GL   P+  A + 
Sbjct: 306 TAMLVMEGCFGLAGLVAAPICYAWLK 331


>gi|309785796|ref|ZP_07680427.1| UPF0118 inner membrane yhhT domain protein [Shigella dysenteriae
           1617]
 gi|308926916|gb|EFP72392.1| UPF0118 inner membrane yhhT domain protein [Shigella dysenteriae
           1617]
          Length = 196

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 55/167 (32%), Gaps = 5/167 (2%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + +IL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 3   ILLKLASLVVILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVQRP-----VAITI 57

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L         E +S +   N+        L ++   +       + L  
Sbjct: 58  VVVVMLIALTALVGVLAASFNEFISMLPKFNKELTRKLFKLQEMLPFLNLHMSPERMLQR 117

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF 176
             S K+++ T     G+           M  +     +  +   + F
Sbjct: 118 MDSEKVVTFTTALMTGLSGAMASVLLLVMAVVFMLFEVRHIPYKMRF 164


>gi|296089963|emb|CBI39782.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score = 46.1 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 75/231 (32%), Gaps = 13/231 (5%)

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYC----LSIIFMIIALFFFYRDGFSISQQLD 189
              S   +   G+ F+            +       S +F  +  +    +   +++Q  
Sbjct: 275 LFDSYKSVLGGGMKFMVSIGESIISGAAEVFNFVSQSAVFFWVLYYLITSESGGVTEQAM 334

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITA 249
           SL       Y  +   ++   I    L    IA  +G +    + L  +       ++  
Sbjct: 335 SLIPMP-KLYRDRCVAVLDNAISGVLLATAEIAFFQGCLTWLLFRLYSIHFLYMSTILAI 393

Query: 250 IMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
           I  ++P       T  +   L+  + +    L +  ++    + +     +         
Sbjct: 394 ISPLLPIFPSWVATIPATIQLVLESRY---ILAITLSVIHLALMEYGASEIQEDIPGYSA 450

Query: 310 LPTFFGLVGGVRTM--GLLGLFIGPVLMAL---IAVIWKESIMAIKENKEK 355
             T   ++GG+      L G  +GP++  +   +  ++ E ++   +  E+
Sbjct: 451 YLTGLSIIGGMTLFPSALEGAIMGPLITTVVIGLKELYTEFVLDGPKQGEE 501


>gi|222111594|ref|YP_002553858.1| hypothetical protein Dtpsy_2422 [Acidovorax ebreus TPSY]
 gi|221731038|gb|ACM33858.1| conserved hypothetical protein [Acidovorax ebreus TPSY]
          Length = 359

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 1/101 (0%)

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P   AL  +T +  ++P    +   AV   + +  +   A     +  +        +  
Sbjct: 251 PYTPALITLTFVAGLVPIVGNLLCNAVITLVGLSVSPVAAVACLAFLILIHKAE-YVINA 309

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            +VG    +        +       G  GL   P+  A + 
Sbjct: 310 KVVGRRTHMGVWELLSVMFVAEAVFGPAGLVAAPLFYAYLK 350


>gi|77456803|ref|YP_346308.1| hypothetical protein Pfl01_0575 [Pseudomonas fluorescens Pf0-1]
 gi|77380806|gb|ABA72319.1| putative membrane protein [Pseudomonas fluorescens Pf0-1]
          Length = 337

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 78/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ +  +       + + E +   + +                      
Sbjct: 61  RWLAVALLGTLVVSVLTLIFAGAISFLLHEAENPGASLDKFMGVVDRA---------RGQ 111

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++     +  +  +         +F+   + ++   I      
Sbjct: 112 LPPFIDAYLPASAAEFRVAIGEWASKHLSELQLVGKDAAHMFVTLLIGMVLGAIIALQRV 171

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +     G+ L     L G+
Sbjct: 172 PDVTKRKPLAAALF-----DRLHLLVQAFRNIVFAQIKISLLNTFFTGIFLAVVLPLFGI 226

Query: 239 --PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             P    L V+T ++ ++P    +    +   + +  +I+ A     +      +    L
Sbjct: 227 KLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAIAALGYLIFIHKLE-YFL 285

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 286 NARIVGGQISAKSWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 329


>gi|218459150|ref|ZP_03499241.1| putative transmembrane permease protein [Rhizobium etli Kim 5]
          Length = 90

 Score = 45.7 bits (107), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/89 (8%), Positives = 30/89 (33%)

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
           ++                    +++  + P ++G  +++     F  ++      G +G 
Sbjct: 2   IITYDGFIVGLMPAAAFFTVHLVMENIIFPAVMGRRLEINPFIVFIAILFWTWMWGAVGA 61

Query: 329 FIGPVLMALIAVIWKESIMAIKENKEKIS 357
            +   L  ++  I +E ++  +   +   
Sbjct: 62  MLALPLSLIVMTIIEELLIEERPQPQLPK 90


>gi|326479410|gb|EGE03420.1| phosphate metabolism protein 7 [Trichophyton equinum CBS 127.97]
          Length = 1130

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/279 (7%), Positives = 66/279 (23%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  ++++     P+        +   +     +   +    F+   +F
Sbjct: 636 WLISAIQGILPPLFLSILMALL--PLVLRFLSRNQGVHTGMAIELTVQNYYFAFLFVQIF 693

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +         +           + S +  + +S      +     
Sbjct: 694 LVVSISSGFSTIIDSLKNVL-SVPDLLAQNIPKASNYFFSYMVLQAMSVSAGALVQIFAL 752

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 753 ISWFILAPLLDNTARKKWARATNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 812

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +  IV +              G            G+       +    +       + 
Sbjct: 813 FSLFWIVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMEICLIGMFFLVRDEKKEVA 872

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V I   +     N     L   + + + D
Sbjct: 873 CEGQAICMIIVLILTGLFQYFLNEAFNPLSLYLPITLED 911


>gi|188591930|ref|YP_001796528.1| hypothetical protein RALTA_B0087 [Cupriavidus taiwanensis LMG
           19424]
 gi|170938304|emb|CAP63289.1| conserved hypothetical protein, putative Membrane protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 345

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/278 (9%), Positives = 77/278 (27%), Gaps = 13/278 (4%)

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
            +A   +  L ++ L    +  +  +    + +     H   +            +  L 
Sbjct: 70  ALAVAILSALILLGLTLAGWLLVRFVSGEGNTLDGLLNHVADIIDRSRGQLPPWLSDALP 129

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                   +L                 +  +      +   + ++   +   +      +
Sbjct: 130 NGVDELANTLIDTLREH-----AAMAQKLGAEVLRTLVHILIGLVIGAMVALYRAVARPN 184

Query: 184 ISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
                         A  + + +   + I +     TI  +   + L     L GV   + 
Sbjct: 185 -----RRPLAAALVARARTLQQAFSQFIFAQIQISTINTVLTAVYLLLVLPLFGVHLPLT 239

Query: 244 LG--VITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
               VIT +  ++P    +      +   +  ++  A    ++  +   +    L   ++
Sbjct: 240 KTLVVITFVAGLLPVLGNLISNTAIVVASLSVSLPIAVASLVFLVVIHKLE-YFLNARII 298

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           G  I+         ++      G+ G+  GP+  A + 
Sbjct: 299 GARIQAAAWELLMVMLLMETLYGIPGVIAGPIFYAYLK 336


>gi|315050224|ref|XP_003174486.1| phosphate metabolism protein 7 [Arthroderma gypseum CBS 118893]
 gi|311339801|gb|EFQ99003.1| phosphate metabolism protein 7 [Arthroderma gypseum CBS 118893]
          Length = 1135

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/279 (7%), Positives = 67/279 (24%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  ++++     P+        +   +     +   +    F+   +F
Sbjct: 641 WLISAIQGILPPLFLSILMALL--PLVLRFLSRNQGVHTGMAIELTVQNYYFAFLFVQVF 698

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +         +           + S +  + +S      +     
Sbjct: 699 LVVSISSGFSTIIDSLKNVL-SVPDLLAQNIPKASNYFFSYMVLQAMSVSAGALVQIFAL 757

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 758 ISWFLLAPMLDNTARKKWARATNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 817

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +  IV +              G            G+       +    +       + 
Sbjct: 818 FGLFWIVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMEICLIGMFFLVRDEKQEVA 877

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V I  ++     N     L   + + + D
Sbjct: 878 CEGQAICMIVVLILTILFQYFLNEAFNPLSLYLPITLED 916


>gi|213967967|ref|ZP_03396113.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|301383718|ref|ZP_07232136.1| hypothetical protein PsyrptM_13838 [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059306|ref|ZP_07250847.1| hypothetical protein PsyrptK_04902 [Pseudomonas syringae pv. tomato
           K40]
 gi|302131579|ref|ZP_07257569.1| hypothetical protein PsyrptN_09312 [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213927310|gb|EEB60859.1| membrane protein [Pseudomonas syringae pv. tomato T1]
 gi|331014655|gb|EGH94711.1| hypothetical protein PLA106_02085 [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 336

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 82/279 (29%), Gaps = 9/279 (3%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A   +  + +  L  +F   +  +         +    + +             + 
Sbjct: 59  ARWLAVALLGTIIVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRARGQLPPFIDAY 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L         SL    +  +    +  I + A+   +  L   +    + +         
Sbjct: 119 LPASAAEFQVSLGQWLQKHVGE--LQLIGKGAAHMFVTMLIGMVLGAIIALQRISADHVR 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  L      +  A+   +   +   + +T      +AI              +P  
Sbjct: 177 KPLAAALFDRLYLVSRAFRNIVFAQIKISLLNTAFTSVFLAIV------LPLCGIHLPLT 230

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L   +V
Sbjct: 231 KTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFLNARIV 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           GG I          ++      GL G+  GP+  A +  
Sbjct: 290 GGQINARSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|282926097|ref|ZP_06333742.1| phage tail length tape-measure protein [Staphylococcus aureus
           A9765]
 gi|282592342|gb|EFB97358.1| phage tail length tape-measure protein [Staphylococcus aureus
           A9765]
          Length = 1549

 Score = 45.7 bits (107), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/329 (11%), Positives = 98/329 (29%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        I  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKAGGIFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G +  I+  I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGALNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+  +  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWSVIKGI 821


>gi|323693346|ref|ZP_08107562.1| hypothetical protein HMPREF9475_02425 [Clostridium symbiosum
           WAL-14673]
 gi|323502590|gb|EGB18436.1| hypothetical protein HMPREF9475_02425 [Clostridium symbiosum
           WAL-14673]
          Length = 242

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 60/224 (26%), Gaps = 3/224 (1%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
              +I  ++++      G   P   AL +     PI      K       L+ I      
Sbjct: 16  AYILIAAMLVLLTILTAGLLMPFWIALFLSAILQPITRLLSGKLGLKKKGLSTIVLFLFY 75

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            L    L+F          +L        +  I               S +  +      
Sbjct: 76  LLLFCILIFGIAEVTNLFGDLFQSFPDYYKDTIVPALGSLGNSIEQIFSIIPNEFRPDMA 135

Query: 132 SLKILSETF---LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
            L+I   T+   + +    +   FA      F    LS++  I+  +F      ++   L
Sbjct: 136 ELQISIMTWIEKIVSAISQYGLTFAGNVISGFTSSILSVLMTILLSYFITVQYDTVVAFL 195

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
                     +   I  ++   +   F    I+     + L   
Sbjct: 196 KCQLPDKIRTFGADIKPLLKNSVVKYFKATLILMFITFIELAIG 239


>gi|225461993|ref|XP_002267547.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 657

 Score = 45.7 bits (107), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 81/271 (29%), Gaps = 13/271 (4%)

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
               +  +        L         ++ +             S   +   G+ F+    
Sbjct: 390 EWGQIYTELDAIFRELLITRADLAEKAKGFAVQGMDVAQRLFDSYKSVLGGGMKFMVSIG 449

Query: 154 SRFGMIFLDYC----LSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                   +       S +F  +  +    +   +++Q  SL       Y  +   ++  
Sbjct: 450 ESIISGAAEVFNFVSQSAVFFWVLYYLITSESGGVTEQAMSLIPMP-KLYRDRCVAVLDN 508

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I    L    IA  +G +    + L  +       ++  I  ++P       T  +   
Sbjct: 509 AISGVLLATAEIAFFQGCLTWLLFRLYSIHFLYMSTILAIISPLLPIFPSWVATIPATIQ 568

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLG 327
           L+  + +    L +  ++    + +     +           T   ++GG+      L G
Sbjct: 569 LVLESRY---ILAITLSVIHLALMEYGASEIQEDIPGYSAYLTGLSIIGGMTLFPSALEG 625

Query: 328 LFIGPVLMAL---IAVIWKESIMAIKENKEK 355
             +GP++  +   +  ++ E ++   +  E+
Sbjct: 626 AIMGPLITTVVIGLKELYTEFVLDGPKQGEE 656


>gi|121595310|ref|YP_987206.1| hypothetical protein Ajs_2995 [Acidovorax sp. JS42]
 gi|120607390|gb|ABM43130.1| conserved hypothetical protein [Acidovorax sp. JS42]
          Length = 359

 Score = 45.4 bits (106), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 1/101 (0%)

Query: 239 PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRP 298
           P   AL  +T +  ++P    +   AV   + +  +   A     +  +        +  
Sbjct: 251 PYTPALITLTFVAGLVPIVGNLLCNAVITLVGLSVSPVAAVACLAFLILIHKAE-YVINA 309

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
            +VG    +        +       G  GL   P+  A + 
Sbjct: 310 KVVGRRTHMGVWELLSVMFVAEAVFGPAGLVAAPLFYAYLK 350


>gi|260220637|emb|CBA28376.1| hypothetical protein Csp_A06960 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 256

 Score = 45.4 bits (106), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 1/130 (0%)

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
           V +        +     L      +   +P    L  +T    +IP    +    V    
Sbjct: 119 VAQFWIATFNAVCTALFLFGALPLFDVHIPYSGMLVALTFFAGLIPIVGNLLCNGVLTLA 178

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +           ++           +   +VG             +  G    G+ GL 
Sbjct: 179 GVSVAPMVGLACLMFLIAIHKFE-YVINAKVVGKRTGTSAWELLTVMFVGEAIFGVAGLV 237

Query: 330 IGPVLMALIA 339
             P+  A I 
Sbjct: 238 AAPLYYAYIK 247


>gi|330873728|gb|EGH07877.1| hypothetical protein PSYMP_04640 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330963386|gb|EGH63646.1| hypothetical protein PSYAC_01812 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 82/279 (29%), Gaps = 9/279 (3%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A   +  + +  L  +F   +  +         +    + +             + 
Sbjct: 59  ARWLAVALLGTIIVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRARGQLPPFIDAY 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L         SL    +  +    +  I + A+   +  L   +    + +         
Sbjct: 119 LPASAAEFQVSLGQWLQKHVGE--LQLIGKGAAHMFVTMLIGMVLGAIIALQRISADHVR 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  L      +  A+   +   +   + +T      +AI              +P  
Sbjct: 177 KPLAAALFDRLYLVSRAFRNIVFAQIKISLLNTAFTSVFLAIV------LPLCGIHLPLT 230

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L   +V
Sbjct: 231 KTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFLNARIV 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           GG I          ++      GL G+  GP+  A +  
Sbjct: 290 GGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|312958705|ref|ZP_07773225.1| hypothetical protein PFWH6_0603 [Pseudomonas fluorescens WH6]
 gi|311287248|gb|EFQ65809.1| hypothetical protein PFWH6_0603 [Pseudomonas fluorescens WH6]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 77/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    ++ +  +       + + E +   + +                      
Sbjct: 61  RWLAVALLGTLIVSVLALIFAGAISFLLHEAENPGASLDKFMGVVDRA---------RGQ 111

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++     +  +  +         +F+   + ++   I      
Sbjct: 112 LPPFLDAYLPASAAEFRVAIGEWLSKHLSELQLVGKDAAHMFVTLLIGMVLGAIIALQRI 171

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +      + L     L G+
Sbjct: 172 PDLTKRKPLAAALF-----DRLHLLVQAFRNIVFAQIKIAALNTAFTAIFLAVVLPLCGI 226

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 227 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVALSLSIWVAVAALGYLIVIHKVE-YFL 285

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 286 NARIVGGQISAKSWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 329


>gi|229588124|ref|YP_002870243.1| hypothetical protein PFLU0573 [Pseudomonas fluorescens SBW25]
 gi|229359990|emb|CAY46844.1| putative membrane protein [Pseudomonas fluorescens SBW25]
          Length = 337

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 77/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    ++ +  +       + + E +   + +                      
Sbjct: 61  RWLAVALLGTLIVSVLALIFAGAISFLLHEAENPGASLDKFMGVVDRA---------RGQ 111

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++     +  +  +         +F+   + ++   I      
Sbjct: 112 LPPFLDAYLPASAAEFRVAIGDWLSKHLSELQLVGKDAAHMFVTLLIGMVLGAIIALQRV 171

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +      + L     L G+
Sbjct: 172 PDLTKRKPLAAALF-----DRLHLLVQAFRNIVFAQIKIAALNTAFTAIFLAVVLPLCGI 226

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 227 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVALSLSIWVAVAALGYLIVIHKVE-YFL 285

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 286 NARIVGGQISAKSWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 329


>gi|213612997|ref|ZP_03370823.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 135

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 1/121 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            ++ L ++ L +L        + L             +  WL     G+   EL      
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQRAGIGVSVDELAKYIDP 130

Query: 129 H 129
           +
Sbjct: 131 N 131


>gi|28872014|ref|NP_794633.1| hypothetical protein PSPTO_4899 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28855267|gb|AAO58328.1| membrane protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 336

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 82/279 (29%), Gaps = 9/279 (3%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A   +  + +  L  +F   +  +         +    + +             + 
Sbjct: 59  ARWLAVALLGTIIVSLLTLIFAGAISFVLHEAENPGASLDKFMTLVDRARGQLPPFIDAY 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L         SL    +  +    +  I + A+   +  L   +    + +         
Sbjct: 119 LPASAAEFQVSLGQWLQKHVGE--LQLIGKGAAHMFVTMLIGMVLGAIIALQRISADHVR 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  L      +  A+   +   +   + +T      +AI              +P  
Sbjct: 177 KPLAAALFDRLYLVSRAFRNIVFAQIKISLLNTAFTSVFLAIV------LPLCGIHLPLT 230

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L   +V
Sbjct: 231 KTLIIMTFLLGLLPVVGNLLSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFLNARIV 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           GG I          ++      GL G+  GP+  A +  
Sbjct: 290 GGQINARSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|294809935|ref|ZP_06768609.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442781|gb|EFG11574.1| conserved domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 183

 Score = 45.4 bits (106), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/167 (9%), Positives = 52/167 (31%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL I           + K++   +  A++ T 
Sbjct: 9   KYSLIVIILFMGIIIFRQITPFLGGLLGALTIYILVRGQMRYLVEKRKLKRSLSALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F++PL    +  + +++++             V  ++ +  G     +     + 
Sbjct: 69  ETIFVFLIPLGLTVWMVVNKLQDINLDPQTYIAPIQQVAEFIKEKTGYDVLGKDTLTFIV 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
                         ++    +         + +          I   
Sbjct: 129 SILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKKWKHTSTIFCH 175


>gi|282897110|ref|ZP_06305112.1| hypothetical protein CRD_02031 [Raphidiopsis brookii D9]
 gi|281197762|gb|EFA72656.1| hypothetical protein CRD_02031 [Raphidiopsis brookii D9]
          Length = 71

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%)

Query: 283 LWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +   I   I D  L P L+G    L  L  F  ++ G    GLLG  +   +   I  
Sbjct: 1   MVAIIIQQIRDNILAPKLLGNFTGLNPLWIFIAILMGFEIGGLLGTLVAVPIAGTIKS 58


>gi|104783833|ref|YP_610331.1| hypothetical protein PSEEN4898 [Pseudomonas entomophila L48]
 gi|95112820|emb|CAK17548.1| conserved hypothetical protein; putative membrane protein
           [Pseudomonas entomophila L48]
          Length = 335

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 80/284 (28%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+    + +   F + + E +   + +                      
Sbjct: 59  RWLAVALLGTLVVSTLTLLIAGAFSFLLHEAENPGASLDKFMALVERA---------RGQ 109

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++      + +  +         +F+   + +I   I      
Sbjct: 110 LPPFIEAYLPASAAEFKVAIGDWIKSHLSDLQLVGKGMAHMFVTLLIGMILGAIVALQRI 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +  +  G+ L     L GV
Sbjct: 170 PDISRRKPLAAALF-----ERLSLLVQAFRNIVFAQIKISLLNTVFTGIFLAVVLPLFGV 224

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 225 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGMSLSIWVAAAALGYLIVIHKVE-YFL 283

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 284 NARIVGGQISAKAWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 327


>gi|296087601|emb|CBI34857.3| unnamed protein product [Vitis vinifera]
          Length = 651

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 79/264 (29%), Gaps = 8/264 (3%)

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E K +   +    +  + V  W   +                  +   +  T       
Sbjct: 376 REWKVIYRDIDGVFREFVSVIAWEDLMEKTKAFLLQSLDVSKQVLASGTMVLTGGANMLF 435

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                  S    +       ++F+ +  +    D   +   +  +   L  +   + +++
Sbjct: 436 SMAVLIVSGAAELLNFISQLMVFLWLLYYLITTDSGGVMDHVLGMLP-LSKSTRDRCAQV 494

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           +   + S  L    +A+ +G      +    +        +  + +++P   A +S    
Sbjct: 495 LDNAVSSVLLASAKVALFQGCFTYLLFRFYCIHFLYMSTFLAVMSSVLPITPAWLSSIPA 554

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG- 324
           +  L ++     A  L     I   ++D      +           T   ++GG+     
Sbjct: 555 AAQLAMEAKYIEAISLTAIHLI---LLDYG-TTAIQDEIPGQNAYLTGLSILGGIALFPS 610

Query: 325 -LLGLFIGPVLMALIAVIWKESIM 347
            L G  +GP+LM ++  +    + 
Sbjct: 611 VLEGAIMGPLLMTVMIALKNLYVE 634


>gi|289811304|ref|ZP_06541933.1| inner membrane protein YhhT [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 139

 Score = 45.0 bits (105), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 5/123 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            +++   + IIL  ++        +L AL       P+ + FI +  +       +A   
Sbjct: 13  ILLKLASLVIILAGIHAAADIIVQLLLALFFAIVLNPLVTWFIRRGVKRP-----LAITI 67

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
           V+ + ++ L  L       + E ++ +   ++        L ++   +       + L  
Sbjct: 68  VVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELTRKVLHLQELMPFLNLHMSPERMLRG 127

Query: 130 PQS 132
             S
Sbjct: 128 MDS 130


>gi|184158988|ref|YP_001847327.1| permease [Acinetobacter baumannii ACICU]
 gi|183210582|gb|ACC57980.1| predicted permease [Acinetobacter baumannii ACICU]
          Length = 203

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/190 (13%), Positives = 61/190 (32%), Gaps = 3/190 (1%)

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
            + AS   +  L   +  + + I +        +      SL              +V  
Sbjct: 8   LKNASSDILHNLVTMVMGLIIGILVAIHGFHRRTPQPVFKSLLIQRIQKLSISFRNVVFA 67

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            I+ + +   +  +   ++L    W   +P    L ++T +  +IP    +    ++   
Sbjct: 68  QIKISAINTLLFILFAFVLLPI--WGVHLPFAKTLTILTFMFGLIPILGNLISNTLTFIA 125

Query: 270 LIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLF 329
            +  ++  A    L+  +   +    +   ++G  I          ++      GL GL 
Sbjct: 126 ALTISLGLAGVALLYLVLVHKLE-YFINAKIIGHKINANAWEILLAMLIFESIFGLSGLI 184

Query: 330 IGPVLMALIA 339
             P+  A + 
Sbjct: 185 AAPIFYAYLK 194


>gi|293372557|ref|ZP_06618939.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292632366|gb|EFF50962.1| conserved domain protein [Bacteroides ovatus SD CMC 3f]
          Length = 189

 Score = 45.0 bits (105), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/175 (8%), Positives = 53/175 (30%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           +  +  +I+F+ ++    +  F   +L AL I        +  + K++   +  A++ T 
Sbjct: 9   KYSLIVIILFMGVIIFRQITPFLGGLLGALTIYILVRGQMNHLVEKRKLKRSISALLITA 68

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + +F++PL    +    +++++             V  ++ +  G     +     + 
Sbjct: 69  ETIFVFLIPLGLTVWMVANKLQDINLDPQTYIAPIQQVAEFIKEKTGYDVLGKDTLSFIM 128

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
                         ++    +         + +      +  +            
Sbjct: 129 SILPRIGQIIMESISSLAINLFVMIFVLYFMLIGGKRWKLMSMTFCHLMKPIRRK 183


>gi|167035896|ref|YP_001671127.1| hypothetical protein PputGB1_4907 [Pseudomonas putida GB-1]
 gi|166862384|gb|ABZ00792.1| conserved hypothetical protein [Pseudomonas putida GB-1]
          Length = 335

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 79/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+    + +   F + + E +   + +                      
Sbjct: 59  RWLAVALLGTLVVSTLTLLIAGAFSFLLHEAENPGASLDKFMALVERA---------RGQ 109

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++      + +  +         +F+   + +I   I      
Sbjct: 110 LPPFIEGYLPASAAEFKVAIGDWIKSHLSDLQLVGKGMAHMFVTLLIGMILGAIIALQRI 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +     G+ L     L GV
Sbjct: 170 PDVSRRKPLAAALF-----ERLNLLVKAFRNIVFAQIKISLLNTAFTGIFLAVVMPLFGV 224

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 225 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAAAALGYLIVIHKVE-YFL 283

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 284 NARIVGGQISAKAWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 327


>gi|315928095|gb|EFV07414.1| outer membrane domain protein [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 153

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 9/143 (6%)

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
               M I+AI +G + G      G    +   +      +   G  + +  VS+Y     
Sbjct: 4   VLYSMVIVAIFQGALFGLITIFYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASN 63

Query: 274 NIFNATCLFLWGAIEL-FIVDKTLRP--------FLVGGPIKLPFLPTFFGLVGGVRTMG 324
           N+ +A  +F++  I + FI D  ++P         LV  P K+  L  F  ++ G+ T G
Sbjct: 64  NLNSALVIFIYSVIVISFIADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFG 123

Query: 325 LLGLFIGPVLMALIAVIWKESIM 347
             G+ +GP ++       +  ++
Sbjct: 124 FWGIILGPAILTFFVSTLRMYVI 146


>gi|227874372|ref|ZP_03992556.1| hypothetical protein HMPREF6123_2495 [Oribacterium sinus F0268]
 gi|227839780|gb|EEJ50226.1| hypothetical protein HMPREF6123_2495 [Oribacterium sinus F0268]
          Length = 447

 Score = 45.0 bits (105), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 61/263 (23%), Gaps = 24/263 (9%)

Query: 20  ILVSLYFLKGFFAPVLSALIIGFTSWPIYSSF--ISKKEESSTFLAVIATVSVMCLFIVP 77
             + L ++ G    VL  ++      P+       S  E        +  +       V 
Sbjct: 19  FTIFLSYIAGLLGFVLLTMLFSSLLNPLILFTGDFSLGELRRGIGLSLTGILFALYVFVC 78

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           + +                      G    + L ++  G               +   L 
Sbjct: 79  IFYFIVL------------------GFSFRKMLLEMSRGEKKVNAAMIFYGFHPNSFPLL 120

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
              L  + + F+       G   +DY L    +  + +               +      
Sbjct: 121 GRMLGFSILAFLFSTVISLGQEVIDYFLGEGLIYWSYYGVSFAVLIFFSLFFDMTFFTVW 180

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
                      K   +   G       + L       +AG        + + I+      
Sbjct: 181 DGEGNSLWQNMKKSVAVMKGQKFSYFRQILYFSLVTSVAG----FIAVMWSFILKSPALP 236

Query: 258 APISFTAVSIYLLIKGNIFNATC 280
             + F  +SIYLL       A  
Sbjct: 237 IFVLFLYLSIYLLPYMGFVQALI 259


>gi|227873116|ref|ZP_03991408.1| possible permease [Oribacterium sinus F0268]
 gi|227841010|gb|EEJ51348.1| possible permease [Oribacterium sinus F0268]
          Length = 276

 Score = 45.0 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 65/233 (27%), Gaps = 16/233 (6%)

Query: 24  LYFLKGFFAPVLSALIIGFTSWPIYSSFIS----------KKEESSTFLAVIATVSVMCL 73
             +L    +P+L    + +   P+ S              K++       ++  + ++  
Sbjct: 46  FSWLSQVTSPLLLGFALAYLFSPLCSLLERVLGKIPLFQKKEKLRRNLGILLCYLLILLS 105

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
            ++            ++ +  +     +    V   L      +           +    
Sbjct: 106 LVLLASLFVSVLTKNIQLI--QGEDFAKGLESVLLLLKSFYEDLNQRVSEIPIAGNDLQE 163

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
            I +      + +  +                +++F II   +F  DG  I+   + +  
Sbjct: 164 GIRTFLAKLLSFVQNLGSNFISSVGNMGSLIGTLLFGIIFSIYFLADGVKIALYWERIFR 223

Query: 194 HLFPAY----WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +        ++   +   +       G  I  I   +++  +  L GV   V
Sbjct: 224 LILGEKRVLAFRGFLKDADRAFSGYIRGQMIDGIIMAILVSFSLSLIGVRYAV 276


>gi|258616165|ref|ZP_05713935.1| hypothetical protein EfaeD_10675 [Enterococcus faecium DO]
          Length = 231

 Score = 45.0 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/190 (10%), Positives = 55/190 (28%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  L  + I R  ++  ++  L+ ++     +L   I  +    +           +  L
Sbjct: 5   QRFLANEKIRRLTVLLFVVFVLFLVRSMITTILLTFIFTYLMIHLVQIIQRFVRIPTGVL 64

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A++    ++ L  +         + +  +++  V+   +H       +            
Sbjct: 65  AIMIYTLIVYLIYLAFTKYIPMLIHQTFDMIQSVIDFYEHQPKDADPVLQYIHTYIERND 124

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           + + L +  S+ +     +    + F   F   F  +       +   +     F     
Sbjct: 125 FFEQLQNGASIALGYLQDIGKMAVAFAMSFILSFFFMIEKKKTIVFSRLFLKSEFSWFFQ 184

Query: 183 SISQQLDSLG 192
            I    D   
Sbjct: 185 DIYYFADKFV 194


>gi|115443374|ref|XP_001218494.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114188363|gb|EAU30063.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1191

 Score = 44.6 bits (104), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/288 (7%), Positives = 66/288 (22%), Gaps = 11/288 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIA---TVSVMCLFIVP 77
             +  ++G    +  A+++     P+        +   +     +             + 
Sbjct: 695 WFISAVQGILPALFLAILMALL--PLILRFLCRTQGLHTGMAVELTVQNYYFAFLFVQLF 752

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           L+         +   V+ +    +         S+        +  +        +  L+
Sbjct: 753 LVVAISSSFSTIINNVTNLTSWPELLAQNIPLSSNYFFSYMILQAMSVSAGALVQIANLA 812

Query: 138 ETFLKTNGIDFIPRF----ASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
             F+     D   R      +    +       +   + ++  F      +   L +   
Sbjct: 813 SWFILAPIFDTTARTKWARTTNLNQMQWGTFFPVYTTLASIGGFSNKMTLLETLLANSHA 872

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            L  +    +  I   +    F  +                    P  V        +  
Sbjct: 873 GLIYSVISPLILIFNVITFGLFWFVYRYNTLYVTKFRFDTGGLLFPRAVNQLFTGIYIME 932

Query: 254 IPGGAPISFTA-VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
           I           V   +  KG       + +       ++++   P +
Sbjct: 933 IALIGLFFLVRDVEGSVACKGQAICMIVVLILTVGYQVLLNEAFGPLI 980


>gi|313500832|gb|ADR62198.1| Hypothetical protein, conserved [Pseudomonas putida BIRD-1]
          Length = 335

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 79/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+    + +   F + + E +   + +                      
Sbjct: 59  RWLAVALLGTLVVSTLTLLIAGAFSFLLHEAENPGASLDKFMALVERA---------RSQ 109

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++      + +  +         +F+   + +I   I      
Sbjct: 110 LPPFIEGYLPASAAEFKVAIGDWIKSHLSDLQLVGKGMAHMFVTMLIGMILGAIIALQRI 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +  I  G+ L     L  V
Sbjct: 170 PDISRRKPLAAALF-----ERLSLLVKAFRNIVFAQIKISLLNTIFTGIFLAVVMPLFDV 224

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   I    L
Sbjct: 225 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAAAALGYLVVIHKIE-YFL 283

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 284 NARIVGGQISAKAWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 327


>gi|55981999|gb|AAV69392.1| putative membrane protein [Edwardsiella tarda]
          Length = 140

 Score = 44.6 bits (104), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 44/120 (36%)

Query: 14  WMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCL 73
             I  +I+  L+ ++ F      A ++   +WP+     +          V+ T+ ++ L
Sbjct: 21  LFIALLIISCLWVVQPFILGFTWASMVVIATWPVLIWLQNHLWGKRWIAVVLMTLLLLLL 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
           F++P+  +    +     ++     A    +P   WL  +P          + L +   L
Sbjct: 81  FVLPIGMVITSLIGNAGPILDWAANARSWQMPQMEWLQTLPLIGAKLYASWQGLMNEGVL 140


>gi|148263313|ref|YP_001230019.1| hypothetical protein Gura_1242 [Geobacter uraniireducens Rf4]
 gi|146396813|gb|ABQ25446.1| hypothetical protein Gura_1242 [Geobacter uraniireducens Rf4]
          Length = 330

 Score = 44.6 bits (104), Expect = 0.023,   Method: Composition-based stats.
 Identities = 37/328 (11%), Positives = 85/328 (25%), Gaps = 19/328 (5%)

Query: 21  LVSLYFLKGFFAPVLS------ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +   Y L     P++       A+  G     +      +   +   L     ++ +   
Sbjct: 6   IFVSYLLAALAVPLVLHFHLLPAVFAGLAVHVLTVKLARRLPANWGGLTHKIALAAIAAI 65

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           ++  L     G+    +    +             L        A  L        + L 
Sbjct: 66  VIMGLIGASLGLWSFLQGNGGMAALLVTVADTLEKLRHALPASMADALPATVEELHEPLA 125

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +            I          F    L ++   +     +    S      +L   
Sbjct: 126 EMLREH-----GKKISAMGMAGIKTFAHVLLGMVVGGMTALHHFSGIDSWPSFSAAL--- 177

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL--GVITAIMA 252
              A  + ++    KV+ +      +  I   L L     L  +   +      +T +  
Sbjct: 178 --HARAQGLADAFDKVVFAQVKISALNTILTALYLLVILPLCDIHMPLLTVLIPLTFVAG 235

Query: 253 MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPT 312
           ++P    +   A  + + +  +   A    ++      +        +VGG +       
Sbjct: 236 LLPVVGNLISNAAIVLISLGMSPGVALASLVFLIAIHKLE-YFTNAKIVGGQVHASAWEL 294

Query: 313 FFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              ++      G+ GL   PV  A +  
Sbjct: 295 LCAMLAMEAVFGIGGLVAAPVAYAWLKA 322


>gi|323439080|gb|EGA96810.1| hypothetical protein SAO11_2079 [Staphylococcus aureus O11]
          Length = 1549

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 40/329 (12%), Positives = 99/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        I  F    + +   S  +        I +
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKAGGIFAF----LRTKIASLVKLFPVLGVSIFS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+A+I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILAIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+  +  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWSVIKGI 821


>gi|221633710|ref|YP_002522936.1| hypothetical protein trd_1737 [Thermomicrobium roseum DSM 5159]
 gi|221155821|gb|ACM04948.1| hypothetical conserved protein [Thermomicrobium roseum DSM 5159]
          Length = 124

 Score = 44.6 bits (104), Expect = 0.024,   Method: Composition-based stats.
 Identities = 7/67 (10%), Positives = 16/67 (23%)

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
                   L +               +        + P + G  + +  L     ++ G 
Sbjct: 1   MARIPLFALALLAEWIPLLVTIASSVLIQNAKGLVIAPLVEGERLDVHPLAALVAVLSGA 60

Query: 321 RTMGLLG 327
              G+ G
Sbjct: 61  ELGGVAG 67


>gi|323441779|gb|EGA99421.1| hypothetical protein SAO46_2245 [Staphylococcus aureus O46]
          Length = 1549

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 99/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        I  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKVGGIFAF----LRTKIASLVKLFPVLGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+  +  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWSVIKGI 821


>gi|46128403|ref|XP_388755.1| hypothetical protein FG08579.1 [Gibberella zeae PH-1]
          Length = 865

 Score = 44.6 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 70/283 (24%), Gaps = 42/283 (14%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSK 95
            AL       PI      ++  + + LAV+ATV +  +F+V   FL      +  +  S 
Sbjct: 144 LALFRWIFYRPIPDFVWRRRRVTFSSLAVLATVFIALVFVVLYCFLQQPLYWQSIQFGS- 202

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
                                          +        L+   + T+    I      
Sbjct: 203 ---------------------------PPLAIRAGMISIALTPWIIATSMKANILTTIIG 235

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTF 215
            G   L+        +            +   L           W      V + +    
Sbjct: 236 IGPERLNVFHRWAGYLC-----------LFLSLVHAIPFYIQPVWDDGGMKVFQRLFPGG 284

Query: 216 LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI---YLLIK 272
            G+        LV      +A +P          ++  IP G             +L+  
Sbjct: 285 SGIIYGTGIACLVPLIWLCVASLPFIRRTAYEVFVVLHIPVGMLYVGLLFWHTKNFLMSW 344

Query: 273 GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             ++    ++ +           L+P+ +   +      T   
Sbjct: 345 AYLYTTIGIWAFCYFLRLFKLNWLKPWRMSFMVGDEAAITLMA 387


>gi|149912308|ref|ZP_01900875.1| hypothetical protein PE36_18548 [Moritella sp. PE36]
 gi|149804611|gb|EDM64675.1| hypothetical protein PE36_18548 [Moritella sp. PE36]
          Length = 188

 Score = 44.6 bits (104), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/153 (8%), Positives = 38/153 (24%), Gaps = 1/153 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    + IIL  +        P L A+ I     P+ +    +          +  +
Sbjct: 12  RNLVMVAAVIIILGGIKIATPIIIPFLLAVFIAIICNPLVNVIT-RCRIPRAIAIFVVLI 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
             + + +     +          +         +   +  +LS     + +  L      
Sbjct: 71  LAITIGLSITSVIGSSVQQLTSNIGDYQSQIRGNYGDLVVFLSKYNINISSDTLLEYFNP 130

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
                 + S     +  +  I         +  
Sbjct: 131 GTAVTMVSSMVSSLSGVMANIFLILLTVVFMLF 163


>gi|294788016|ref|ZP_06753260.1| putative membrane protein [Simonsiella muelleri ATCC 29453]
 gi|294484309|gb|EFG31992.1| putative membrane protein [Simonsiella muelleri ATCC 29453]
          Length = 335

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 43/340 (12%), Positives = 94/340 (27%), Gaps = 18/340 (5%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +  LN +     ++  I+L            + SAL +   +  I ++      +    L
Sbjct: 4   QKNLNIKTFTLTLLGVILLWLPVLWLHLTIVLFSALTVYGLTLAIDNALQKWLPKKHGTL 63

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +  +  + + I+ ++          + L  ++   +   + +   L            
Sbjct: 64  ISVLLLLAILVLIIVMI---------TEWLGDRISTHSFSDMMLQAALVLDQLHAVLPNS 114

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
            +K L           + L       I                 ++   +A         
Sbjct: 115 MSKFLPETLDGFNAMFSHLLKTHATQIQTAGVHTLRGIGHLLAGMVIGALAAIQLK---- 170

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPS 240
                 D     L  + ++ +     +V  +      +      + L     L G  +P 
Sbjct: 171 --PPFSDKPLAQLLRSEFQNLLHDFNQVFFAQVRISALNTFLTAIYLLGVMPLMGKPLPL 228

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
              L V T    ++P    +      + L +   +  +T   LW      +    L    
Sbjct: 229 SGTLVVFTFFAGLLPVVGNLISNTFIVILSLNHGVTISTLSLLWLMSIHKLE-YFLNAHF 287

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +G  IK         ++      GL GL   P++ A I  
Sbjct: 288 IGHKIKASAWEALLAMLVLESAFGLAGLISAPIIYAQIKS 327


>gi|258454514|ref|ZP_05702481.1| phage tail tape measure protein [Staphylococcus aureus A5937]
 gi|257863371|gb|EEV86132.1| phage tail tape measure protein [Staphylococcus aureus A5937]
          Length = 1514

 Score = 44.6 bits (104), Expect = 0.027,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 39/326 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAINSVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    +  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +  +FG +      G+ G+  G 
Sbjct: 751 ---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|258429966|ref|ZP_05688336.1| phage tail tape measure protein [Staphylococcus aureus A9299]
 gi|257849560|gb|EEV73528.1| phage tail tape measure protein [Staphylococcus aureus A9299]
          Length = 1514

 Score = 44.2 bits (103), Expect = 0.027,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 39/326 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAINSVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    +  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +  +FG +      G+ G+  G 
Sbjct: 751 ---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|254412044|ref|ZP_05025819.1| Pentapeptide repeat protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181010|gb|EDX75999.1| Pentapeptide repeat protein [Microcoleus chthonoplastes PCC 7420]
          Length = 417

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/142 (11%), Positives = 42/142 (29%), Gaps = 7/142 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSL-----YFLKGFFAPVLSALIIGFTSWPIYSSFISKKE 56
           R+ + +P  I+   I  +I+  +       L G    +L ++       P+         
Sbjct: 59  RKALADPSIIILSAIAVLIVGLVLDNNWVILAGVIVTLLLSV--SAIWSPLQQWLQQSLS 116

Query: 57  ESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
                  +     ++ +  +  L  F      +  L   +    Q  I +          
Sbjct: 117 PQQRSQVIAVCGVILAIVGIAALTGFTKAFDSVGSLAEWIGALGQILIAILAVYIAWRQY 176

Query: 117 MWASELWTKHLSHPQSLKILSE 138
           + + +L  +  +  Q   I + 
Sbjct: 177 VISKDLTIQQNTITQQQTIDAY 198


>gi|170723803|ref|YP_001751491.1| hypothetical protein PputW619_4642 [Pseudomonas putida W619]
 gi|169761806|gb|ACA75122.1| conserved hypothetical protein [Pseudomonas putida W619]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 79/280 (28%), Gaps = 17/280 (6%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+    + +   F + + E +   + +                      
Sbjct: 59  RWLAVALLGTLVVSTLTLLIAGAFSFLLHEAENPGASLDKFMALFERA---------RGQ 109

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++      + +  +         +F+   + +I   I      
Sbjct: 110 LPPFIEGYLPASAAEFKVAIGEWIKSHLSDLQLVGKGMAHMFVTLLIGMILGAIIALQRI 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +  +  G+ L     L GV
Sbjct: 170 PDISRRKPLAAALF-----ERLSLLVQAFRNIVFAQIKISLLNTVFTGIFLAVVLPLFGV 224

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 225 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGMSLSIWVAAAALGYLIVIHKVE-YFL 283

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
              +VGG I          ++      GL G+  GPV  A
Sbjct: 284 NARIVGGQISAKAWELLLAMLVFEAAFGLPGVVAGPVYYA 323


>gi|307106824|gb|EFN55069.1| hypothetical protein CHLNCDRAFT_134947 [Chlorella variabilis]
          Length = 1171

 Score = 44.2 bits (103), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/123 (8%), Positives = 35/123 (28%), Gaps = 3/123 (2%)

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
           ++ +  + + +    +    +    G      + +  +P      V +A  A++P     
Sbjct: 841 QRTAMALNRALGGVLVSSMKLIAFHGCFSWITFRVMNLPLTYTASVASAACALLPFVPTY 900

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +       +L+           +      F+        ++             G++GG+
Sbjct: 901 AVALPGCAVLLAQGR---LLAAVLFFALHFMGYYIGDTVILEDIPGGHPYMLSLGILGGI 957

Query: 321 RTM 323
              
Sbjct: 958 YAF 960


>gi|296276206|ref|ZP_06858713.1| TP901 family phage tail tape measure protein [Staphylococcus aureus
           subsp. aureus MR1]
          Length = 1514

 Score = 44.2 bits (103), Expect = 0.030,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 39/326 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAINSVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    +  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +  +FG +      G+ G+  G 
Sbjct: 751 ---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|330807279|ref|YP_004351741.1| hypothetical protein PSEBR_a589 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375387|gb|AEA66737.1| Conserved hypothetical protein; putative membrane protein
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 337

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 82/288 (28%), Gaps = 17/288 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+ +  +     F + + E +   + +                      
Sbjct: 61  RWLAVALLGTLVVSVLTLIFAGAFSFLLHEAENPGASLDKFMTVVDRA---------RGQ 111

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++     +  +  +         +F+   + ++   I      
Sbjct: 112 LPPFIDAYLPASAAEFRVAIGDWVSKHLSDLQLVGKDAAHMFVTLLIGMVLGAIVALQRI 171

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +     G+ L     L G+
Sbjct: 172 PDLTKRKPLAAALF-----DRLNLLVKAFRNIVFAQIKISLLNTFFTGIFLAVVLPLFGI 226

Query: 239 --PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             P    L V+T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 227 KLPLTKTLIVMTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAVAALGYLIVIHKLE-YFL 285

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
              +VGG I          ++      GL G+  GP+  A +    K+
Sbjct: 286 NARIVGGQISAKSWELLMAMLVFEAAFGLPGVVAGPIYYAYLKSELKQ 333


>gi|282919796|ref|ZP_06327528.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus C427]
 gi|282316434|gb|EFB46811.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus C427]
          Length = 1549

 Score = 44.2 bits (103), Expect = 0.032,   Method: Composition-based stats.
 Identities = 36/342 (10%), Positives = 99/342 (28%), Gaps = 36/342 (10%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L      + +  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKASGLFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + +G 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFIGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +             G    GL+ +    ++      +    
Sbjct: 796 ILG-------VVRYFGGLLKGLITIIWVAIIGVFKKSLSAIW 830


>gi|168060621|ref|XP_001782293.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666223|gb|EDQ52883.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 623

 Score = 44.2 bits (103), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 59/198 (29%), Gaps = 6/198 (3%)

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            + F    AS    +      +IIF  +  +    +   +  Q+ ++   L  +   + +
Sbjct: 412 VLSFWSSMASGAVGLINFITETIIFFSVLYYLITSESGGVMNQVLNMVP-LSDSVRSRCA 470

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            ++   + S FL     AI +       +    +        +     +IP       + 
Sbjct: 471 DVLDHAVSSVFLATMKAAIFQATFTWLLFTWFRIHFLYMATFLAMSQPVIPLFPNWLASI 530

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
                L     +    + +   +     +  L   +           T   + GG+    
Sbjct: 531 PGGAQLALEGRYGEAAVLVILHVYGM--EYGLS-KIYLEIPGHSGYLTGLSIAGGMALFS 587

Query: 325 LL--GLFIGPVLMALIAV 340
               G  +GP++M ++  
Sbjct: 588 PALEGAILGPLIMTVLLA 605


>gi|213854882|ref|ZP_03383122.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 71

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 28/55 (50%)

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
              LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 2   GADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 56


>gi|148549930|ref|YP_001270032.1| hypothetical protein Pput_4728 [Pseudomonas putida F1]
 gi|148513988|gb|ABQ80848.1| hypothetical protein Pput_4728 [Pseudomonas putida F1]
          Length = 335

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 79/284 (27%), Gaps = 17/284 (5%)

Query: 59  STFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMW 118
                 +    V+    + +   F + + E +   + +                      
Sbjct: 59  RWLAVALLGTLVVSTLTLLIAGAFSFLLHEAENPGASLDKFMALVERA---------RGQ 109

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
                  +L    +   ++      + +  +         +F+   + +I   I      
Sbjct: 110 LPPFIEGYLPASAAEFKVAIGDWIKSHLSDLQLVGKGMAHMFVTMLIGMILGAIIALQRI 169

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
            D         +L           + +    ++ +      +  I  G+ L     L  V
Sbjct: 170 PDISRRKPLAAALF-----ERLSLLVKAFRNIVFAQIKISLLNTIFTGIFLAVVMPLFDV 224

Query: 239 PSHVAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              +     V+T ++ ++P    +    +   + +  +I+ A     +  +   +    L
Sbjct: 225 HLPLTKTLIVLTFLLGLLPVIGNLMSNTLITIVGLSLSIWVAAAALGYLIVIHKVE-YFL 283

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
              +VGG I          ++      GL G+  GP+  A +  
Sbjct: 284 NARIVGGQISAKAWELLLAMLVFEAAFGLPGVVAGPIYYAYLKS 327


>gi|73539272|ref|YP_299639.1| hypothetical protein Reut_B5450 [Ralstonia eutropha JMP134]
 gi|72122609|gb|AAZ64795.1| membrane protein, putative [Ralstonia eutropha JMP134]
          Length = 344

 Score = 44.2 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/326 (10%), Positives = 89/326 (27%), Gaps = 18/326 (5%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ ++ +         A  LS L++      +                 I +  ++    
Sbjct: 26  LLTVLALWTVLQANLVAAFLSGLLLYSLVDVLAPRLKGLNHRHDAVAVAILSFVILLALS 85

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
           + +  L  +   E       +     H   +              +  +  L        
Sbjct: 86  LGIWALVRFVSGEGT-----LDALLNHIADIIDQ-----SRGQLPDWVSGALPTTVEELA 135

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            +             +  +      L   + ++   +   +      +      +L    
Sbjct: 136 NTLIHWLREHAQMAQKLGAEVLRTLLHIIIGMVIGAMVALYRAVSRPNRRPLATALV--- 192

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV--ALGVITAIMAM 253
                + + +   + I +     TI  +   + L     L GV   +   L VIT +  +
Sbjct: 193 --MRARALQQAFAQFIFAQIQISTINTMLTAIYLLVVMPLFGVHLPLSKTLVVITFVAGL 250

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +   A  +   +  ++  A     +  +   +    L   ++G  I+       
Sbjct: 251 LPVLGNLISNAAIVVSSLAVSLPIAVASLFYLVVIHKLE-YFLNARIIGARIQAAAWELL 309

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++      G+ G+  GP+  A + 
Sbjct: 310 IVMLLMETLYGIPGVIAGPIFYAYLK 335


>gi|237798326|ref|ZP_04586787.1| hypothetical protein POR16_05746 [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331021178|gb|EGI01235.1| hypothetical protein POR16_05746 [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 336

 Score = 44.2 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 83/279 (29%), Gaps = 9/279 (3%)

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASE 121
              +A   +  + +  L  +F   +  +         +    + +             + 
Sbjct: 59  ARWLAVALLGTVVVSLLTLIFAGVISFVLHEAENPGASLDKFMVLVDRARGQLPPFIDAY 118

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
           L         SL +  +  +    +  I + A+   +  L   +    + +         
Sbjct: 119 LPASAAEFRVSLGLWLQKHVGE--LQLIGKGAAHMFVTMLIGMVLGAIIALQRISADHVR 176

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
             ++  L      L  A+   +   +   + +T      +AI              +P  
Sbjct: 177 KPLAAALFDRLYLLSRAFRNIVFAQIKISLLNTAFTSVFLAIV------LPLCGIHLPLT 230

Query: 242 VALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
             L ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L   +V
Sbjct: 231 KTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALCYLIVIHKVE-YFLNARIV 289

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           GG I          ++      GL G+  GP+  A +  
Sbjct: 290 GGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 328


>gi|198474420|ref|XP_001356677.2| GA10013 [Drosophila pseudoobscura pseudoobscura]
 gi|198138385|gb|EAL33742.2| GA10013 [Drosophila pseudoobscura pseudoobscura]
          Length = 1142

 Score = 43.8 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 101/324 (31%), Gaps = 34/324 (10%)

Query: 18  FIILVSLYFLKG-----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++  ++ +L           +  +  I   + P   S   K+            +S++ 
Sbjct: 431 LLLFYAVQYLHNTNGIELLGALSWS--ISMLATPFVVSLCRKRSIR--------LLSIVG 480

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             ++PL  LF     E  ++V    +    G+ + R  S +  G +             S
Sbjct: 481 GLVMPLGILFTSFATEFGQVVFSYGIVFGIGVAMVREASTVMLGNYFKRRRQFVEMVAMS 540

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            + +          + + +   R G+  +    ++ F +  ++          + +  L 
Sbjct: 541 GEGVGIALFSVILKEGVGKAGWRLGLQIVAALTALSFFMGLMYRPASLYHPQRRAIQHLK 600

Query: 193 --EHLFPAYWKKISRIVPKVIRSTF--LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +S+ V    R  F  +        + L++ S+    G+ + + L  + 
Sbjct: 601 NQRKKMREKKPILSQEVESPTRYLFLDISSLKSVTVKILLMTSSVASFGIYTPMFLMALN 660

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIE--LFIVDKT-LRPFLVGGP 304
           A                 + LL     I  A  + + GA+   +F++    +   +V   
Sbjct: 661 AAKE--------GSDVQELVLLQTFLGISMALGVVIAGALLRRVFVIRHFVINTKIV--- 709

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGL 328
            +L        ++     MG  GL
Sbjct: 710 TQLFISIVALAILFLSFVMGYKGL 733


>gi|120610649|ref|YP_970327.1| hypothetical protein Aave_1969 [Acidovorax citrulli AAC00-1]
 gi|120589113|gb|ABM32553.1| conserved hypothetical protein [Acidovorax citrulli AAC00-1]
          Length = 352

 Score = 43.8 bits (102), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
           W   +P   AL  +T +  ++P    +   AV   + +  +   A     +  +      
Sbjct: 239 WDLRLPYTPALITLTFLAGLVPIVGNLLCNAVITIVGLSVSPTAAIACLAFLVLIHKAE- 297

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             +   +VG    +        +       G  GL   P+  A + 
Sbjct: 298 YVINAKVVGQRTHMGVWELLSVMFVAEAVFGPAGLVAAPLFYAYLK 343


>gi|33322266|gb|AAQ06855.1|AF496192_1 UPF0018 permease [Lactobacillus delbrueckii subsp. lactis]
          Length = 68

 Score = 43.8 bits (102), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 30/67 (44%)

Query: 274 NIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
           ++     + +   IE  I  + + P +VG  +K+    T   ++G     GL G+  G  
Sbjct: 2   DLSMVAKVLVVFFIEQIIETRVISPLVVGNRLKMHPATTIIVMLGAGSVWGLWGVIGGIP 61

Query: 334 LMALIAV 340
           + A++ +
Sbjct: 62  IYAVMKI 68


>gi|237835367|ref|XP_002366981.1| P-type ATPase, putative [Toxoplasma gondii ME49]
 gi|211964645|gb|EEA99840.1| P-type ATPase, putative [Toxoplasma gondii ME49]
 gi|221506344|gb|EEE31979.1| phospholipid-transporting ATPase, putative [Toxoplasma gondii VEG]
          Length = 2301

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 57/207 (27%), Gaps = 21/207 (10%)

Query: 95   KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
            + V A    I   +++ ++        L        Q++       L      F+  FA+
Sbjct: 1859 QAVRAADFAIGEFKFVRNLMFYHGREALRRNAFQMYQTIFKNVVFGLADLFFAFVSVFAA 1918

Query: 155  R-FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                  +L    ++++  I +  F      +   +      L+PA + K+   +    R+
Sbjct: 1919 SDIFNPWLKQLYNVLYTCIPVMLFTVFDRQLPYDVLLQTPVLYPA-FSKLGVNMFAGARA 1977

Query: 214  TFLGMTIIAIGEGLVLGSAYWLAG-----------------VPSHVALGVITAIMA--MI 254
             +            ++    +  G                     +    I  +    M+
Sbjct: 1978 FWKWFLFGFYVSATLVYFPLYGIGWAFTYTNNDGIITFSLAFYGAIVFWCIILVCNLVMV 2037

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCL 281
            P      +       L  G  + +  +
Sbjct: 2038 PFMHTWFWFIWLGIFLDFGFWWMSLAI 2064


>gi|213026077|ref|ZP_03340524.1| hypothetical protein Salmonelentericaenterica_28038 [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 81

 Score = 43.8 bits (102), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 20/81 (24%), Gaps = 2/81 (2%)

Query: 249 AIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
               +IP       T   +   L   G        F    I   +    L P L    + 
Sbjct: 1   GFSVLIPYIGAFVVTIPVVGVALFQFGLGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVN 60

Query: 307 LPFLPTFFGLVGGVRTMGLLG 327
           L  L     +V      G  G
Sbjct: 61  LHPLVIILSVVIFGGLWGFWG 81


>gi|309361519|emb|CAP29333.2| hypothetical protein CBG_09778 [Caenorhabditis briggsae AF16]
          Length = 839

 Score = 43.8 bits (102), Expect = 0.040,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 76/287 (26%), Gaps = 34/287 (11%)

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           V    +    +     ++   +  +      ++      +     + ++ +         
Sbjct: 540 VWQQLKGVTDLAALKDELTLIVKENLDTLMGVAQSVGSILAVNVSIFSSLLVSFAGIILS 599

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS-------------LGEHLFPAYWKK 202
           FGM  L+  + +I  +  +++      +    L               +        ++ 
Sbjct: 600 FGMELLNTFIELIVFLTMVYYLLSASRTRWLPLQWASDLSAVTANDETINRTRHFVSFRS 659

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
                       F+    +A+  GL     + L  +       +   + A IP   P   
Sbjct: 660 YPFTFIFFSSGVFILSAKMAVFYGLYTYFVHSLFDLNIVFVPSMAATLFAAIPIMPPYIV 719

Query: 263 TAVSIYLLIK--GNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
               I  L    G    A    L     +   D                  T   ++GG+
Sbjct: 720 AIFGIVELWLVRGEGAAALVFTLASFAPVMFAD----ATFYKEVKGSHPYVTGLAIIGGM 775

Query: 321 RTMG---------------LLGLFIGPVLMALIAVIWKESIMAIKEN 352
             +G                 G  IGP+++ L  V+    +  +K +
Sbjct: 776 YWLGLQVYYARKSKKATLNFQGAIIGPIILCLCLVLVNVYLQHVKPS 822


>gi|218514462|ref|ZP_03511302.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 62

 Score = 43.8 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 318 GGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENK 353
           GGV+TMG LGLFIGPVLMALI  IW+E I   +  +
Sbjct: 1   GGVKTMGFLGLFIGPVLMALIVAIWREWIHEARNAE 36


>gi|195147992|ref|XP_002014958.1| GL18673 [Drosophila persimilis]
 gi|194106911|gb|EDW28954.1| GL18673 [Drosophila persimilis]
          Length = 1133

 Score = 43.8 bits (102), Expect = 0.041,   Method: Composition-based stats.
 Identities = 43/324 (13%), Positives = 101/324 (31%), Gaps = 34/324 (10%)

Query: 18  FIILVSLYFLKG-----FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
            ++  ++ +L           +  +  I   + P   S   K+            +S++ 
Sbjct: 434 LLLFYAVQYLHNTNGIELLGALSWS--ISMLATPFVVSLCRKRSIR--------LLSIVG 483

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
             ++PL  LF     E  ++V    +    G+ + R  S +  G +             S
Sbjct: 484 GLVMPLGILFTSFATEFGQVVFSYGIVFGIGVAMVREASTVMLGNYFKRRRQFVEMVAMS 543

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            + +          + + +   R G+  +    ++ F +  ++          + +  L 
Sbjct: 544 GEGVGIALFSVILKEGVGKAGWRLGLQIVAALTALSFFMGLMYRPASLYHPQRRAIQHLK 603

Query: 193 --EHLFPAYWKKISRIVPKVIRSTF--LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                       +S+ V    R  F  +        + L++ S+    G+ + + L  + 
Sbjct: 604 NQRKKMREKKPILSQEVESPTRYLFLDISSLKSVTVKILLMTSSVASFGIYTPMFLMALN 663

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKG-NIFNATCLFLWGAIE--LFIVDKT-LRPFLVGGP 304
           A                 + LL     I  A  + + GA+   +F++    +   +V   
Sbjct: 664 AAKE--------GSDVQELVLLQTFLGISMALGVVIAGALLRRVFVIRHFVINTKIV--- 712

Query: 305 IKLPFLPTFFGLVGGVRTMGLLGL 328
            +L        ++     MG  GL
Sbjct: 713 TQLFISIVALAILFLSFVMGYKGL 736


>gi|282904459|ref|ZP_06312344.1| phage tail tape measure protein, TP901 family, core region domain
           protein [Staphylococcus aureus subsp. aureus C160]
 gi|282595015|gb|EFB99981.1| phage tail tape measure protein, TP901 family, core region domain
           protein [Staphylococcus aureus subsp. aureus C160]
          Length = 1549

 Score = 43.8 bits (102), Expect = 0.044,   Method: Composition-based stats.
 Identities = 38/342 (11%), Positives = 98/342 (28%), Gaps = 36/342 (10%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        I  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKAGGIFAF----LRTKIASLVKLFPILGMSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDEIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
            +             G    GL+ +    ++      +    
Sbjct: 796 ILG-------VVRYFGGLLKGLITIIWVAIIGVFKKSLSAIW 830


>gi|319760168|ref|YP_004124106.1| putative transmembrane protein [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038882|gb|ADV33432.1| putative transmembrane protein [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 336

 Score = 43.8 bits (102), Expect = 0.045,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG--VPSHVALGVIT 248
              +        +S     ++ +     +I  +   +++     + G  +P    L +IT
Sbjct: 178 YFTNQLLERIYNLSHAFHNIVFAQLKISSINTLLTSIMIFILIPVFGETLPLGKTLIIIT 237

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP 308
            ++ ++P    +    +     +  ++     + ++  +   +    L   ++G  I   
Sbjct: 238 FVLGLLPIVGNLISNIMITISALSISLSIGITMLIYLILIHKLE-YFLNAEIIGNKINSH 296

Query: 309 FLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
                  ++      GL GL   P+  A + +
Sbjct: 297 TWELVLAMIFLESIFGLEGLIAAPIFYAYLKI 328


>gi|221485488|gb|EEE23769.1| phospholipid-translocating P-type ATPase family protein [Toxoplasma
            gondii GT1]
          Length = 2301

 Score = 43.4 bits (101), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 57/207 (27%), Gaps = 21/207 (10%)

Query: 95   KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
            + V A    I   +++ ++        L        Q++       L      F+  FA+
Sbjct: 1859 QAVRAADFAIGEFKFVRNLMFYHGREALRRNAFQMYQTIFKNVVFGLADLFFAFVSVFAA 1918

Query: 155  R-FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
                  +L    ++++  I +  F      +   +      L+PA + K+   +    R+
Sbjct: 1919 SDIFNPWLKQLYNVLYTCIPVMLFTVFDRQLPYDVLLQTPVLYPA-FSKLGVNMFAGART 1977

Query: 214  TFLGMTIIAIGEGLVLGSAYWLAG-----------------VPSHVALGVITAIMA--MI 254
             +            ++    +  G                     +    I  +    M+
Sbjct: 1978 FWKWFLFGFYVSATLVYFPLYGIGWAFTYTNNDGIITFSLAFYGAIVFWCIILVCNLVMV 2037

Query: 255  PGGAPISFTAVSIYLLIKGNIFNATCL 281
            P      +       L  G  + +  +
Sbjct: 2038 PFMHTWFWFIWLGIFLDFGFWWMSLAI 2064


>gi|282911581|ref|ZP_06319381.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282324590|gb|EFB54902.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus WBG10049]
          Length = 1509

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 39/326 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAINSVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    +  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +  +FG +      G+ G+  G 
Sbjct: 751 ---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|270160062|ref|ZP_06188718.1| putative membrane protein [Legionella longbeachae D-4968]
 gi|269988401|gb|EEZ94656.1| putative membrane protein [Legionella longbeachae D-4968]
          Length = 135

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 2/116 (1%)

Query: 228 VLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF--TAVSIYLLIKGNIFNATCLFLWG 285
           +     W  GV   +  GV+ A++ +IP               LL KG+   A  +    
Sbjct: 1   MNTLGLWFLGVEHAILFGVLAAVLILIPYIGIFIGSLLPALFVLLTKGSFGYAFAVIFIF 60

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVI 341
            I   +    L P +VG  + +       GL+ G   +G+ G+     ++A+  VI
Sbjct: 61  IIVQVLEGNFLTPNIVGSQVSVNPFAVILGLLIGGLLLGITGIMFALPVLAITKVI 116


>gi|118725105|ref|YP_908841.1| phage tail tape measure protein [Staphylococcus phage phiNM3]
 gi|151222100|ref|YP_001332922.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|295428537|ref|ZP_06821164.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297589990|ref|ZP_06948630.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus MN8]
 gi|104641870|gb|ABF73212.1| phage tail tape measure protein [Staphylococcus phage phiNM3]
 gi|150374900|dbj|BAF68160.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|295127519|gb|EFG57158.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus EMRSA16]
 gi|297577118|gb|EFH95832.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus MN8]
          Length = 1509

 Score = 43.4 bits (101), Expect = 0.053,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 39/326 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAINSVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    +  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +  +FG +      G+ G+  G 
Sbjct: 751 ---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|312437577|gb|ADQ76648.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus TCH60]
          Length = 1509

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 39/326 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAINSVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    +  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +  +FG +      G+ G+  G 
Sbjct: 751 ---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|49484197|ref|YP_041421.1| hypothetical protein SAR2050 [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49242326|emb|CAG41035.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 1509

 Score = 43.4 bits (101), Expect = 0.054,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 98/326 (30%), Gaps = 39/326 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAINSVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    +  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+  I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGP 332
              +  +FG +      G+ G+  G 
Sbjct: 751 ---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|221058030|ref|XP_002261523.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
 gi|194247528|emb|CAQ40928.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
           knowlesi strain H]
          Length = 1136

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 70/263 (26%), Gaps = 8/263 (3%)

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
           +    EL       N        +L+++   +   E   K   H     I + ++     
Sbjct: 648 LQHATELYDPQKEKNFKFKEFIGYLNNLFSSIKKIEDVGKLTKH----LIFNNSYGLIKI 703

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISR 205
           + F       F M   D  +  I    AL++      S    ++ +   L          
Sbjct: 704 MLFFLLIFFNFFMYTFDAIIQGIIFFTALYYLISSKKSALSYVNDIL--LVVDPSSIFFY 761

Query: 206 IVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAV 265
            +   +++             L +   +        +        + +           +
Sbjct: 762 NITMNLKAIITCTLKRVYFYTLYIWLVFSFF--EFPIIYVPTLGCIILSLIPIISPEIVI 819

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            + ++    I     +        F V       +               L   + T G 
Sbjct: 820 LVIVVHLWIIQKRKIMSSLLFAINFFVYLYFTTSIYAEIPHTHAWLVSLSLFLSISTFGS 879

Query: 326 LGLFIGPVLMALIAVIWKESIMA 348
            GL +GP++ ++  ++ + ++  
Sbjct: 880 KGLILGPLIGSIPLILHQIAMNK 902


>gi|205374232|ref|ZP_03227031.1| hypothetical protein Bcoam_13929 [Bacillus coahuilensis m4-4]
          Length = 182

 Score = 43.4 bits (101), Expect = 0.055,   Method: Composition-based stats.
 Identities = 16/164 (9%), Positives = 40/164 (24%), Gaps = 14/164 (8%)

Query: 12  MRWMIMFIILVSLYFLKGFF-----------APVLSALIIGFTSWPIYSSFISKKEESST 60
           +  +        +Y L   +            P +    + +   P+             
Sbjct: 13  LLLLFSVTSCYIIYLLAPVWQPFLRILLLAATPFIIGAFVTYLLHPVVEKLHE-AGLHRV 71

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
              +I  +       + +   F   + +++EL + V +  +       ++ D        
Sbjct: 72  VALLIIYLLFFGGVGIGIYKGFPAILDQLRELSANVPVYIREYRGWLSFIHDQTSMW--P 129

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC 164
           E     L             L    I  +  F + F +      
Sbjct: 130 EALQVQLEERIVSIEKWGGGLVERTIGVLLSFMNHFFLYSAHSV 173


>gi|213021887|ref|ZP_03336334.1| putative inner membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 77

 Score = 43.4 bits (101), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISS 358
           L+     LP L    G++GG+   G++GLFIGPVL+A+   ++   +  +     +   
Sbjct: 4   LIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLLAVTWRLFSAWVHEVPAPTNEPEE 62


>gi|330899647|gb|EGH31066.1| hypothetical protein PSYJA_19631 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 265

 Score = 43.4 bits (101), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 4/221 (1%)

Query: 122 LWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG 181
                +                  +          G       ++++  ++         
Sbjct: 39  QLPPFIDAYLPASAAEFQVSLGQWLQKHVGELQLIGKGAAHMFVTMLIGMVLGAIIALQR 98

Query: 182 FSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSH 241
            S       L   LF      +SR    ++ +      +      + L     L G+   
Sbjct: 99  ISDVHARKPLAAALF-DRLHLVSRAFRNIVFAQIKISLLNTAFTSVFLAIVLPLCGIHLP 157

Query: 242 VAL--GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
           +     ++T ++ ++P    +    +   + +  +I+ A     +  +   +    L   
Sbjct: 158 LTKTLIIMTFLLGLLPVVGNLMSNTLIFIVGMSISIWVALAALGYLIVIHKVE-YFLNAR 216

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +VGG I          ++      GL G+  GP+  A +  
Sbjct: 217 IVGGQINAKSWELLLAMLLFEAAFGLPGVVAGPIYYAYLKS 257


>gi|225452324|ref|XP_002272633.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 680

 Score = 43.4 bits (101), Expect = 0.060,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 77/264 (29%), Gaps = 8/264 (3%)

Query: 87  LEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGI 146
            E K +   +    +  + V  W   +                  +   +  T       
Sbjct: 405 REWKVIYRDIDGVFREFVSVIAWEDLMEKTKAFLLQSLDVSKQVLASGTMVLTGGANMLF 464

Query: 147 DFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRI 206
                  S    +       ++F+ +  +    D   +   +  +   L  +   + +++
Sbjct: 465 SMAVLIVSGAAELLNFISQLMVFLWLLYYLITTDSGGVMDHVLGMLP-LSKSTRDRCAQV 523

Query: 207 VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG-GAPISFTAV 265
           +   + S  L    +A+ +G      +    +        +  + +++P   A +S    
Sbjct: 524 LDNAVSSVLLASAKVALFQGCFTYLLFRFYCIHFLYMSTFLAVMSSVLPITPAWLSSIPA 583

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG- 324
           +  L ++     A  L     I L          +           T   ++GG+     
Sbjct: 584 AAQLAMEAKYIEAISLTAIHLILL----DYGTTAIQDEIPGQNAYLTGLSILGGIALFPS 639

Query: 325 -LLGLFIGPVLMALIAVIWKESIM 347
            L G  +GP+LM ++  +    + 
Sbjct: 640 VLEGAIMGPLLMTVMIALKNLYVE 663


>gi|309800180|ref|ZP_07694365.1| membrane protein [Streptococcus infantis SK1302]
 gi|308116188|gb|EFO53679.1| membrane protein [Streptococcus infantis SK1302]
          Length = 119

 Score = 43.1 bits (100), Expect = 0.061,   Method: Composition-based stats.
 Identities = 9/89 (10%), Positives = 30/89 (33%)

Query: 18  FIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
            II   +        P L    + + + PI      + + +     ++   +++C  ++ 
Sbjct: 29  AIITPFVSVANTIMIPFLLGGFLYYLTNPIVIFLEKECKINRIIGILLTLCALVCALVLS 88

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPV 106
            ++L    + ++  L+       +     
Sbjct: 89  FVYLLPILINQLSSLIYSSQKHLRSSSRF 117


>gi|47570094|ref|ZP_00240752.1| membrane protein [Bacillus cereus G9241]
 gi|47553210|gb|EAL11603.1| membrane protein [Bacillus cereus G9241]
          Length = 133

 Score = 43.1 bits (100), Expect = 0.062,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I F+      F+   F P+L AL + F   P+      K +       ++  + ++ L  
Sbjct: 37  ISFLFQPIGIFISTLFFPILIALFLYFIFNPVLVFLEDK-KVPRNLAILLLYLFIITLTA 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
           V +  +      ++ +LV  +    + G    + LS 
Sbjct: 96  VGVGVVVPTISQQLMDLVKNMPGYIKEGKVYIQDLSH 132


>gi|269202521|ref|YP_003281790.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus ED98]
 gi|262074811|gb|ACY10784.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus ED98]
          Length = 1549

 Score = 43.1 bits (100), Expect = 0.068,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 97/323 (30%), Gaps = 32/323 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        I  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKAGSIFAF----LRTKIASLVKLFPILGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLL 326
            +    +  +FG +      G+ 
Sbjct: 796 ILG---VVRYFGGLLKGLIAGIW 815


>gi|67539802|ref|XP_663675.1| hypothetical protein AN6071.2 [Aspergillus nidulans FGSC A4]
 gi|40738856|gb|EAA58046.1| hypothetical protein AN6071.2 [Aspergillus nidulans FGSC A4]
 gi|259479744|tpe|CBF70245.1| TPA: DUF221 domain protein, putative (AFU_orthologue; AFUA_2G09070)
           [Aspergillus nidulans FGSC A4]
          Length = 1196

 Score = 43.1 bits (100), Expect = 0.070,   Method: Composition-based stats.
 Identities = 17/231 (7%), Positives = 55/231 (23%), Gaps = 4/231 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G   P+  A+++     P+        +   +     +   +    F+   LF
Sbjct: 683 WLISAVQGILPPLFLAILMALL--PLMLRFLCRAQGLQTGMGIELTVQNYFFAFLFVQLF 740

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +     +   +           + S +  + LS      +   + 
Sbjct: 741 LVVAIASSFSTIIDNITNF-TNWPELLAQNIPSSSNYFFSYMILQALSVSAGALVQIFSL 799

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  I    +R           + +      +       +   + +    +F    
Sbjct: 800 VSWFILAPILDSTARRKWARTTNLNQMQWGTFFPVYTTLASIGLIYSVIAPLIMVFNVIT 859

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
             +   V +              G            G+       +    +
Sbjct: 860 FGLFWFVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGIYVMELSLIGLFFL 910


>gi|255023095|ref|ZP_05295081.1| hypothetical protein LmonocyFSL_05835 [Listeria monocytogenes FSL
           J1-208]
          Length = 151

 Score = 43.1 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/142 (11%), Positives = 43/142 (30%), Gaps = 15/142 (10%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLY--------------FLKGFFAPVLSALIIGFTSWPI 47
           ++  +  + ++  +I  ++ + +Y               LK   AP++ A I  +   PI
Sbjct: 9   KQFFIENKFVLGLLIFLLVALDIYVLTKIAFIFDPLMVILKTVAAPIILAGISYYLFNPI 68

Query: 48  YSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVP 107
                   +    +   +  + ++ L I+   F+      ++  L               
Sbjct: 69  IDWLEKH-KWKRGWAIALLYLVIIGLIILLFSFVIPAVKDQIISLFKSFPGYWDQITQKF 127

Query: 108 RWLSDIPGGMWASELWTKHLSH 129
              S         +    ++S 
Sbjct: 128 DEFSRSSLFDQIKDKLNTNMSD 149


>gi|255025016|ref|ZP_05297002.1| membrane protein YueF [Listeria monocytogenes FSL J1-208]
          Length = 70

 Score = 43.1 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           +G  + +  L     L+      G+ G+ +G  L A++  I 
Sbjct: 1   MGKSLSIHPLTIIIILIVAGNLAGIFGMILGVPLYAVVKTII 42


>gi|94676634|ref|YP_588599.1| hypothetical protein BCI_0130 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219784|gb|ABF13943.1| conserved hypothetical protein [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 335

 Score = 43.1 bits (100), Expect = 0.071,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 105/331 (31%), Gaps = 16/331 (4%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           ++ ++ + +      F   L+  +       +   F      SS    ++  +++  +  
Sbjct: 15  VLMLLFLGIIIPLHLFTCFLAGFLAYEIIISLTPGFERIVGISSARWVIVTMIAIFVVIT 74

Query: 76  --VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
               ++ L     ++ +  +  +   ++    V   + D            +      +L
Sbjct: 75  MTWGIVRLLSILTIDTQGGIDIIAEIDRICSIVNNRIPDFLSPFILPNSAEEFKVKLLNL 134

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
              +   ++  G  F+    + F  + +   +S+        +F         QL +   
Sbjct: 135 IESNIVMIRNMGSKFLHGIITAFIGMTIGSVISLNKPAGNSTYFTL-------QLIARLN 187

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           +L  A+   +   +   + +T L   ++ I         Y    +P    L ++T I  +
Sbjct: 188 YLAEAFRHVVLAQIKVSLFNTLLTSIMMFIV------FPYLNINLPLGKTLIILTFIFGL 241

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +P    +    + I   +  +I     + L+      +    +   +VG  I        
Sbjct: 242 LPIIGNLISNLMIIISALSVSITVGGFMLLYLIFIHKLE-YFINAEIVGSRIHAKSWELL 300

Query: 314 FGLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
             ++      GL GL  GP+  A I    + 
Sbjct: 301 LAMLISEAAFGLEGLVAGPIYYAYIKTELRA 331


>gi|322798949|gb|EFZ20420.1| hypothetical protein SINV_06589 [Solenopsis invicta]
          Length = 98

 Score = 43.1 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 25/53 (47%)

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKISSNF 360
               T   + GG+  +G+ G   GP+L+  I VI   S   +   +E+I S +
Sbjct: 17  HPYLTGLSIAGGIFCLGVEGAIFGPLLLCCIMVIINLSRRYLHSPEEEILSTY 69


>gi|254410768|ref|ZP_05024546.1| hypothetical protein MC7420_246 [Microcoleus chthonoplastes PCC
           7420]
 gi|196182123|gb|EDX77109.1| hypothetical protein MC7420_246 [Microcoleus chthonoplastes PCC
           7420]
          Length = 73

 Score = 42.7 bits (99), Expect = 0.083,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 27/70 (38%)

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           + +   I   I++  + P L+GG   L  +     L+ G +  G++GL I   +   I  
Sbjct: 1   MLVVAIIIEQIIENVIAPRLLGGFTGLNPVWLLVSLLIGAKIGGVVGLLIAVPMAGFIKS 60

Query: 341 IWKESIMAIK 350
                    +
Sbjct: 61  TATVWKTQKR 70


>gi|325299538|ref|YP_004259455.1| hypothetical protein Bacsa_2440 [Bacteroides salanitronis DSM
           18170]
 gi|324319091|gb|ADY36982.1| hypothetical protein Bacsa_2440 [Bacteroides salanitronis DSM
           18170]
          Length = 1110

 Score = 42.7 bits (99), Expect = 0.089,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 84/299 (28%), Gaps = 20/299 (6%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     S+V         +      +      + L  K +  P   +
Sbjct: 53  GAPFFMLTANLFSQFTSDPSQVARMVNIMSALMSAACILFLFWSITHLVKKLIC-PDEKE 111

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           + +   +   G   +   A  +   F    +       +  F     + I +  +   E 
Sbjct: 112 MTAGKLIAIMGSGLVGALAYTWSDTFWFSAVEGEVYAYSSLFTAVVFWLILKWENRATEA 171

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +   I+ +    I    L +  I     +        A +   +     + ++  +
Sbjct: 172 HSDRWLILIAYLTGLSIGVHLLNLLCIPAIVLVYYYKKNPNANLKGSLLALCGSMVLIAV 231

Query: 255 PGGAPISFTA----VSIYLLIKGNIFNATCLFLWGAIELFI-------VDKTLRPFLVGG 303
                +            L + G  F+     +   I L            TLR      
Sbjct: 232 VLYGIVPGIVKIGGWFELLFVNGFGFSFNTGLIIYIILLAASLVWGIYESYTLRSR---K 288

Query: 304 PIKLPFLPT--FFGLVGGVRTMGLLGLFIGPVLMALI-AVIWKESIMAIKENKEKISSN 359
            + + FL T    G+       G+  + IG +++A++   ++       + +   ++++
Sbjct: 289 RMNISFLTTVGLLGIPFYGH--GVSSVIIGIIVLAVLAFYLFANLPEKYRVSARTLNTS 345


>gi|308126573|ref|ZP_07663821.1| putative permease protein [Vibrio parahaemolyticus AQ4037]
 gi|308109626|gb|EFO47166.1| putative permease protein [Vibrio parahaemolyticus AQ4037]
          Length = 225

 Score = 42.7 bits (99), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 17/214 (7%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
           +LYF K    P++ +  +     P+ + F  K    +  + V  T+ V    +       
Sbjct: 25  ALYFAKPVLLPMVISTFVALLFSPLINYFEDKGLPRTITVVVTLTLLVSVSILGLAA--- 81

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                  K+  +++    Q+       ++                     L+I S+  + 
Sbjct: 82  --ISEPAKQWWAELPSIVQNVSQEVNEVTK-----------ASSEHMNAPLEIASDMNID 128

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK- 201
             G + +                  + ++  ++F    G S+ ++  S            
Sbjct: 129 EMGNNTVFSLLKALATTTPTLLTQAMIVLFMVYFMLNHGRSLFRKSVSRLRGFSKQRQAV 188

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
           ++ + + K +            G  LV     + 
Sbjct: 189 ELVQALQKDLSRYIGTHYFGQCGFRLVCWIGVFC 222


>gi|322825976|gb|EFZ30781.1| hypothetical protein TCSYLVIO_2919 [Trypanosoma cruzi]
          Length = 687

 Score = 42.7 bits (99), Expect = 0.093,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 67/254 (26%), Gaps = 22/254 (8%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G    +  W   L            FL              F  ++       +     
Sbjct: 412 RGDPLLTVDWLSVLQKLLRRWRPFFAFLTQLLFGLGSNMMGLFDSVYATMLFVCVLRYFL 471

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                   +  ++ L  +       + + I R +    R+       ++     +    +
Sbjct: 472 QLEHTILYYGFAKMLRVIHPQGGEKHARMIEREITVSFRTLLQSFWHLSWFHFCITFCLF 531

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF-------LWGA 286
                P+    G+I+++ A+ P               +  N   +           +W  
Sbjct: 532 NAWSFPTPFFCGMISSLTAVFPLTPKWFSPVAFALGSVFFNAVASDGFLGAAVDQRVWSC 591

Query: 287 IELFIVDKTLRPFL-VGGPIK--------------LPFLPTFFGLVGGVRTMGLLGLFIG 331
              F+        L V   ++              LP       LV G  T G+ G+ +G
Sbjct: 592 FLAFLASYADEWLLCVSRGLRGNPLKDFTGVKREQLPTFVVGTALVLGYVTYGVRGILLG 651

Query: 332 PVLMALIAVIWKES 345
           P+ + +  V++   
Sbjct: 652 PMTVIVAKVLFDNW 665


>gi|119443702|ref|YP_918940.1| tail length tape measure protein2 [Staphylococcus phage phiPVL108]
 gi|257425562|ref|ZP_05601986.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257430854|ref|ZP_05607234.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257436459|ref|ZP_05612503.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282914758|ref|ZP_06322541.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|282924534|ref|ZP_06332202.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|293503320|ref|ZP_06667167.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293510333|ref|ZP_06669039.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus M809]
 gi|293530871|ref|ZP_06671553.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|119225828|dbj|BAF41199.1| tail length tape measure protein2 [Staphylococcus phage phiPVL108]
 gi|257271256|gb|EEV03402.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257278284|gb|EEV08920.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257283810|gb|EEV13933.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus M876]
 gi|282313369|gb|EFB43764.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282321320|gb|EFB51648.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus M899]
 gi|290920139|gb|EFD97205.1| tail length tape measure protein [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291094986|gb|EFE25251.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466697|gb|EFF09217.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus M809]
          Length = 1110

 Score = 42.7 bits (99), Expect = 0.096,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 101/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L      + +  F    + +   S  +        I++
Sbjct: 73  LVFMFGLFISVMGNAMTVLGPLLINVNKASGLFAF----LRTKIASLVKLFPILGVSISS 128

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV  L        +  +            I  V          +       K 
Sbjct: 129 LTLPITLIVGALVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 188

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 189 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 248

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 249 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 304

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 305 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGK 355

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+ G+  G 
Sbjct: 356 ILG---VVRYFGGLLKGLISGIWGVIKGI 381


>gi|302333617|gb|ADL23810.1| bacteriophage tail tape measure protein [Staphylococcus aureus
           subsp. aureus JKD6159]
          Length = 1503

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 90/317 (28%), Gaps = 32/317 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAIESVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    I  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+  I 
Sbjct: 659 INFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGFIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             + +              +++   + L G +   ++   ++ + VG  +    +  +FG
Sbjct: 709 FFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG---VVRYFG 756

Query: 316 LVGGVRTMGLLGLFIGP 332
            +      G+ G+  G 
Sbjct: 757 GLLKGLISGIWGVIKGI 773


>gi|325273641|ref|ZP_08139857.1| hypothetical protein G1E_11203 [Pseudomonas sp. TJI-51]
 gi|324101245|gb|EGB98875.1| hypothetical protein G1E_11203 [Pseudomonas sp. TJI-51]
          Length = 335

 Score = 42.7 bits (99), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL--GVITAIMAMIP 255
                + +    ++ +      +     G+ L     L GV   +     V+T ++ ++P
Sbjct: 184 ERLALLVQAFRNIVFAQIKISLLNTAFTGIFLAVVMPLFGVHLPLTKTLIVLTFLLGLLP 243

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +    +   + +  +I+ A     +  +   +    L   +VGG I          
Sbjct: 244 VIGNLMSNTLITIVGLSLSIWVAAAALGYLIVIHKVE-YFLNARIVGGQISAKAWELLLA 302

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV 340
           ++      GL G+  GP+  A +  
Sbjct: 303 MLVFEAAFGLPGVVAGPIYYAYLKS 327


>gi|88813464|ref|ZP_01128699.1| hypothetical membrane spanning protein [Nitrococcus mobilis Nb-231]
 gi|88789254|gb|EAR20386.1| hypothetical membrane spanning protein [Nitrococcus mobilis Nb-231]
          Length = 100

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 39/77 (50%)

Query: 281 LFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
           +F+  +I +   +  L+P L+   I  P L    G  GG+   G++GLF+G V++ L   
Sbjct: 13  IFMVWSIIVSFSNAVLKPRLLNRGIDRPILVIRLGATGGMIMSGIIGLFVGAVVLTLGYK 72

Query: 341 IWKESIMAIKENKEKIS 357
           + +  + + + ++   +
Sbjct: 73  LIQTWLRSGEADEAATA 89


>gi|167585446|ref|ZP_02377834.1| putative transporter [Burkholderia ubonensis Bu]
          Length = 225

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 9/222 (4%)

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                  L             L    +D + +        F      +I   +       
Sbjct: 2   PAWIANLLPVDVEQMKTKAALLMHTHMDQLQQSGKSVARGFGHVLFGMIIGAMIAIGVEH 61

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-- 237
           D       +             + +    +++ +      I A    L L  A  +    
Sbjct: 62  DK------VRRPLSTALVTRVSRFADAFRRIVFAQIKISAINAFFTSLYLLVALPIFHER 115

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    L ++T I+ ++P    +    + + + +  ++  A     +  I   +    L 
Sbjct: 116 LPLSKTLVLVTFIVGLLPVIGNLISNTLIVAVSLSVSMGTAIASLAFLVIIHKLE-YFLN 174

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             ++GG I+         ++      GL G+   P+  A + 
Sbjct: 175 AKIIGGQIESRAWELLLAMLVMEAAFGLPGVIAAPIFYAYLK 216


>gi|148268427|ref|YP_001247370.1| TP901 family phage tail tape measure protein [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150394488|ref|YP_001317163.1| TP901 family phage tail tape measure protein [Staphylococcus aureus
           subsp. aureus JH1]
 gi|257793339|ref|ZP_05642318.1| phage tail tape measure protein [Staphylococcus aureus A9781]
 gi|258421066|ref|ZP_05683997.1| phage tail tape measure protein [Staphylococcus aureus A9719]
 gi|295407463|ref|ZP_06817258.1| phage tail length tape-measure protein [Staphylococcus aureus
           A8819]
 gi|297246309|ref|ZP_06930156.1| phage tail length tape-measure protein [Staphylococcus aureus
           A8796]
 gi|147741496|gb|ABQ49794.1| phage tail tape measure protein, TP901 family [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946940|gb|ABR52876.1| phage tail tape measure protein, TP901 family [Staphylococcus
           aureus subsp. aureus JH1]
 gi|257787311|gb|EEV25651.1| phage tail tape measure protein [Staphylococcus aureus A9781]
 gi|257843014|gb|EEV67432.1| phage tail tape measure protein [Staphylococcus aureus A9719]
 gi|294967666|gb|EFG43700.1| phage tail length tape-measure protein [Staphylococcus aureus
           A8819]
 gi|297176794|gb|EFH36053.1| phage tail length tape-measure protein [Staphylococcus aureus
           A8796]
 gi|315129228|gb|EFT85222.1| phage tail tape measure protein, TP901 family [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|329728084|gb|EGG64527.1| phage tail tape measure protein, TP901 family [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 1510

 Score = 42.3 bits (98), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/333 (12%), Positives = 97/333 (29%), Gaps = 53/333 (15%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPV-----LSALIIGFTS--WPIYSSFISKKEE-SS 59
              ++   I   I   ++ L  F + V     + A ++   +    + S   +K     +
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTVGNAVTVLAPLLASIAKADGLISFLSTKVPILGT 545

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F A+   + ++   +  L   F     + +   + V  A                    
Sbjct: 546 VFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFI- 604

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                            S   +    +  I  FA         +       I+       
Sbjct: 605 ----------------DSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL---- 644

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +I   + ++ E +     K I   + +V+        I    + L++ +   + GV 
Sbjct: 645 --QNICNFIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV- 695

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                G +  I+  I   + +              +++   + L G +   ++   ++ +
Sbjct: 696 ---IQGALNIILGFIKFFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLW 743

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            VG  +    +  +FG +      G+ G+  G 
Sbjct: 744 FVGKILG---VVRYFGGLLKGLISGIWGVIKGI 773


>gi|261884207|ref|ZP_06008246.1| transport protein [Campylobacter fetus subsp. venerealis str.
           Azul-94]
          Length = 158

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 31/133 (23%), Gaps = 5/133 (3%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
           M     ++      II   L        P   A+ I     P+       K         
Sbjct: 1   MKYQLTLISIASFVIIATGLAAASAIVVPFFLAVFIAIAISPVLEFMQRLKIRR-----T 55

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
           I+ + ++ +FI  L FL       +    S +               +         +  
Sbjct: 56  ISFILLIAIFIGILWFLGNVVSSALNGFSSSLPEYQMQFKIFIDKTVEWLNSYEIIXIIV 115

Query: 125 KHLSHPQSLKILS 137
              S  Q      
Sbjct: 116 LVRSIDQIDISTQ 128


>gi|326797637|ref|YP_004315456.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
 gi|326548401|gb|ADZ76786.1| multi-sensor hybrid histidine kinase [Sphingobacterium sp. 21]
          Length = 1203

 Score = 42.3 bits (98), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 8/162 (4%)

Query: 1   MRETMLNPQGIMRWMI---MFII---LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISK 54
           +RE  L+ + ++  ++   M +     V    L+        A+ + F +   +   I K
Sbjct: 14  LREIFLSKEQMLTGLVDLCMLLTTTYFVIFSLLRSVLLVSFLAVFLVFITC--FRWLIRK 71

Query: 55  KEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
           ++    +        +    +VPL++        +   ++   L         +      
Sbjct: 72  RKIRIQYAIHFLIFIITFCLLVPLMYFTGGLNSPITSWLALPPLIFVLLFGNRKNTRWWF 131

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
             +         LS  + +          N   F+       
Sbjct: 132 RVILFILTIFTLLSQSEYVFPNLIAPHLRNIHLFVSTVGVII 173


>gi|9635727|ref|NP_061640.1| phi PVL ORF 15 and 16 homologue [Staphylococcus prophage phiPV83]
 gi|8918797|dbj|BAA97857.1| phi PVL ORF 15 and 16 homologue [Staphylococcus prophage phiPV83]
          Length = 1313

 Score = 41.9 bits (97), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/329 (11%), Positives = 100/329 (30%), Gaps = 32/329 (9%)

Query: 16  IMFIILVSLYFLKG---FFAPVLS-----ALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
           ++F+  + +  +        P+L        I  F    + +   S  +        I++
Sbjct: 513 LVFMFGLFISVMGNAMTVLGPLLINVNKAGGIFAF----LRTKIASLVKLFPVLGVSISS 568

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLSDIPGGMWASELWTKH 126
           +++    IV +L        +  +            I  V          +       K 
Sbjct: 569 LTLPITLIVGVLVGIGIAFYQAYKRSETFRNIVNQAISGVANAFKAAKLALQGFFDLFKG 628

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI--IFMIIALFFFYRDGFSI 184
            S                GI  +           +D  +            F+  +G  I
Sbjct: 629 DSKGAVTLEKIFPPETVAGIQNVVNTIRTTFFKVVDAIVGFAKEIGAQLASFWKENGSEI 688

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTF-LGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
           +Q L ++   +   +    + I+  ++ + + +   I    + L++ +   + GV     
Sbjct: 689 TQALQNIAGFIKATFEFIFNFIIKPIMFAIWQVMQFIWPAVKALIVSTWENIKGV----I 744

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
            G I  I+ +I   + +              +++   + L G +   ++   ++ + VG 
Sbjct: 745 QGAINIILGIIKVFSSLFTG-------NWRGVWDGIVMILNGTV--QLIWNLIQLWFVGK 795

Query: 304 PIKLPFLPTFFGLVGGVRTMGLLGLFIGP 332
            +    +  +FG +      G+  +  G 
Sbjct: 796 ILG---VVRYFGGLLKGLISGIWSVIKGI 821


>gi|323456519|gb|EGB12386.1| hypothetical protein AURANDRAFT_9610 [Aureococcus anophagefferens]
          Length = 54

 Score = 41.9 bits (97), Expect = 0.15,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 21/53 (39%)

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALI 338
            +   +V   + P L G  +KL  +     L+      G+ G  +   + A++
Sbjct: 1   VVMHAVVGNVVEPILFGHSMKLHPVVVLLSLMIWGFLWGIPGCVLAVPITAIL 53


>gi|316977860|gb|EFV60908.1| peptidase, S54 family [Trichinella spiralis]
          Length = 966

 Score = 41.9 bits (97), Expect = 0.16,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 16/219 (7%)

Query: 15  MIMFIILVSLYFLKGFF------APVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           ++ FI+ + +  L  +          +  L++    +P      + + +    +A   T+
Sbjct: 642 LLAFIVFLFILGLLPWIDNYAHAFGFVFGLLLSLALFPYIQFDENGRRKRIIIVASSLTI 701

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +  L ++ +LF            V        + IP    L D      A EL    + 
Sbjct: 702 CIGLLGVLVILFYVNPLWS-CDNCV------YFNCIPFTDHLCDNRESTQAEELEVLRMI 754

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +   L    E +        IP  A                +       Y +  +   ++
Sbjct: 755 YLDELIFDDENYPAKF---HIPVEAVTTDQFQCQAVKVECIIWFEYTSKYPEQEAPIFRI 811

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL 227
           DS   ++  A   +I   +  V++  F  M I  + + L
Sbjct: 812 DSWSSNVTSAMVDQIQTCLENVVKQNFGTMMIYTLVDTL 850


>gi|156100941|ref|XP_001616164.1| hypothetical protein [Plasmodium vivax SaI-1]
 gi|148805038|gb|EDL46437.1| hypothetical protein, conserved [Plasmodium vivax]
          Length = 1022

 Score = 41.9 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 4/196 (2%)

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
           M   D  +  I    AL++      S    ++ +   L           V   +++    
Sbjct: 582 MYTFDAIVQGIIFFTALYYLISSRKSALSYVNDIL--LVVDPSSIFFYNVTMNLKAIITC 639

Query: 218 MTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFN 277
                    L +   +     P      +   I+++IP  +P     V +  L       
Sbjct: 640 TLKRVYFYTLYIWLVFSFFEFPIIYVPTLGCIILSLIPIISPEIIILVIVVHLWVIQKRK 699

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
              +        F V       +               L   + T G  GL +GP++ ++
Sbjct: 700 --VVSTVLFAINFFVYLYFTTSIYTEIPHTHAWLVSLSLFLSISTFGSKGLILGPLIGSI 757

Query: 338 IAVIWKESIMAIKENK 353
             ++ + +I   +  +
Sbjct: 758 PLILHQIAIHKNRSAQ 773


>gi|195052176|ref|XP_001993249.1| GH13704 [Drosophila grimshawi]
 gi|193900308|gb|EDV99174.1| GH13704 [Drosophila grimshawi]
          Length = 1121

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 27/302 (8%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
             +  I   + P   S   K+            +S++   ++PL  LF     E  ++V 
Sbjct: 441 ALSWSISMLAIPFVVSLCRKRSIR--------LLSIVGGLVMPLGILFTSFATEFGQVVF 492

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
              +    G+ + R  S +  G +             S + +          + + +   
Sbjct: 493 SYGIVFGIGVSMVREASTVMLGNYFKRRRQFVEMVAMSGEGVGIALFSVILKEGVGKAGW 552

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG--EHLFPAYWKKISRIVPKVIR 212
           R G+  +    ++ F +  ++          + +  L            K++  V    R
Sbjct: 553 RLGLQIVAALTALSFFMGLMYRPASLYHPQRRAIQHLKNQRKKLREKKPKLTHEVESPTR 612

Query: 213 STF--LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
             F  +        + L++ S+    G+ + + L  + A                 + LL
Sbjct: 613 YLFLDISSLKSVTVKILLMTSSVAAFGIYTPMFLMALNAAKE--------GSDVQELVLL 664

Query: 271 IKG-NIFNATCLFLWGAIE--LFIVDKT-LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                I  A  + L GA+    F++    +   +V   + +        ++     MG  
Sbjct: 665 QTFLGISMALGVVLAGALLRRCFVIRHFVINSKIVA-QLFIS--IVALAILFLSFVMGYK 721

Query: 327 GL 328
           GL
Sbjct: 722 GL 723


>gi|330940342|gb|EGH43449.1| lipoprotein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 78

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 37/77 (48%)

Query: 5  MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            N + +++ +++ +    L+ +  F++ ++   ++ F SWP+        +   +  A+
Sbjct: 2  FNNDRLLVQILLLALFGACLWVMAPFWSALVWGAVLAFASWPLMRLLTRWFKGRESLAAL 61

Query: 65 IATVSVMCLFIVPLLFL 81
          +  +  M L   PL++L
Sbjct: 62 VMCLCWMLLVAAPLVWL 78


>gi|71651477|ref|XP_814416.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70879385|gb|EAN92565.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 687

 Score = 41.5 bits (96), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 69/254 (27%), Gaps = 22/254 (8%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G    +  W   L +          FL              F  ++       +     
Sbjct: 412 RGDPLLTVDWLSVLQNLLRRWRPFFAFLTQLLFGLGSNMMGLFDSVYATMLFVCVLRYFL 471

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                   + +++ L  +       + + I R +    R+       ++     +    +
Sbjct: 472 QLEHTILYYGVAKMLRVIHPQGGEKHARMIEREITVSFRTLLQSFWHLSWFHFCITFCLF 531

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF-------LWGA 286
                P+    G+I+++ A+ P               +  N   +           +W  
Sbjct: 532 NAWSFPTPFFCGMISSLTAVFPLTPKWFSPVAFALGSVFFNAVASDGFLGAAVDQRVWSC 591

Query: 287 IELFIVDKTLRPFL-VGGPIK--------------LPFLPTFFGLVGGVRTMGLLGLFIG 331
              F+        L V   ++              LP       LV G  T G+ G+ +G
Sbjct: 592 FLAFLASYADEWLLCVSRGLRGNPLKDFTGVKREQLPTFVVGTALVLGYVTYGVRGILLG 651

Query: 332 PVLMALIAVIWKES 345
           P+ + +  V++   
Sbjct: 652 PMTVIVAKVLFDNW 665


>gi|170034868|ref|XP_001845294.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167876587|gb|EDS39970.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 838

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 12/246 (4%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +      +       +          P   + I G + ++      ++    + + + 
Sbjct: 552 GLVGPRVTSQ------SIQATIDEIFINPITKAGIIGFVKSNIGMLLEVADSLWMLLRTN 605

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L  + I  +       G   L +    I     LF+  +              + +  
Sbjct: 606 LTLLASAIGTLVSVILGGGHAVLKFLFHTIIFFTTLFYLLQSSQDRYAPTGITINNSWGP 665

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               I + +   I S  +    +A+  GL     + + G        V+ +I+A  P   
Sbjct: 666 R---IIQALEDSISSVVVATLKLALFHGLFTWLTHTIVGAHIVYLPAVLASILAAAPFLE 722

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLV 317
               +  +   L          L  +  +  FIV     P +            T   + 
Sbjct: 723 TYWCSVPAFLDLWLSQDR--FWLGAFLVLVHFIVPSNFNPIIHSEIKGGGHPYLTGLSIA 780

Query: 318 GGVRTM 323
           GG+   
Sbjct: 781 GGMYLF 786


>gi|226287009|gb|EEH42522.1| palmitoyltransferase pfa5 [Paracoccidioides brasiliensis Pb18]
          Length = 469

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 45/215 (20%), Gaps = 12/215 (5%)

Query: 31  FAPVLSALIIGFTSWPIYS------SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY 84
             PV+  LII +  W             SK       +++   V+   L I  L+     
Sbjct: 15  VIPVILGLIIIYACWVFTKSLCIDYLLQSKARNPRNAVSIGLLVAFYILLIGLLVSYLRL 74

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
               +  L          G       +        S    +  S     K   E      
Sbjct: 75  LAALIWNL-----DYVPRGPQYAESQATAESSKGKSVSRKRRQSIFSRSKTDEEWHDLGE 129

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWKKI 203
                 + A  F    L+        +           +  Q   D +          + 
Sbjct: 130 VTGNHGKSAYPFDASGLEAFYLKDVYVCKEDGKPPWCSTCQQFKSDRVHHCREIGRCVRK 189

Query: 204 SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                  +       +     + L     +    +
Sbjct: 190 MDHFCPWVGGVVSETSFKFFIQFLFYAVLFTTFNL 224


>gi|255018707|ref|ZP_05290833.1| hypothetical protein LmonF_15116 [Listeria monocytogenes FSL
           F2-515]
          Length = 227

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 72/244 (29%), Gaps = 18/244 (7%)

Query: 29  GFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                +L   I  F    + +  + +       + ++    V     V ++      + +
Sbjct: 1   SMIDLILLTFIFAFLVTRLENVILKRVRVPRKLIVIVLYSLVAVFLYVAIVHFLPILINQ 60

Query: 89  MKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDF 148
           + +LV  +V    +                     T        LK  +       G+DF
Sbjct: 61  ISQLVDSLVKLYNN-----------------PSDNTIVKWIVGFLKESNIQKYLQAGVDF 103

Query: 149 IPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
           I    S  G + L + L++I  +       R      Q + S    +F        +   
Sbjct: 104 IIASLSGIGSVGLSFFLALILSLFFSLEKERVTSFTGQFMTSKVGFIFKE-AAFFGKKFV 162

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
                      +IA+    +   A +L   P  ++L ++  ++ +IP    I      + 
Sbjct: 163 STFGVVLEAQLMIALVNTFITTIALYLMDFPQLLSLSIMVFVLGLIPVAGVIISCIPLVL 222

Query: 269 LLIK 272
           +   
Sbjct: 223 IAYS 226


>gi|169614818|ref|XP_001800825.1| hypothetical protein SNOG_10558 [Phaeosphaeria nodorum SN15]
 gi|160702826|gb|EAT81952.2| hypothetical protein SNOG_10558 [Phaeosphaeria nodorum SN15]
          Length = 1240

 Score = 41.5 bits (96), Expect = 0.19,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 72/269 (26%), Gaps = 24/269 (8%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWP-IYSSFISKKE----ESSTFLAVIATVSVMCLFIV 76
            ++ F++G   P+  A++      P +                  L      + + + + 
Sbjct: 728 WAISFVQGVLPPLFLAILFAIL--PILLRFLAGFTGTTTAGERELLVQNFYFAFVFVQLF 785

Query: 77  PLLFLFYYGMLEMKELVSK----VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            ++ +       ++++V           ++      +          S      L     
Sbjct: 786 LVVSISTGLTTAIQKIVDNPISVPQTLAENLPKAANYFFSYMILQALSISSGTLLQIGAV 845

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYC-LSIIFMIIALFFFYRDGFSISQQLDSL 191
           + I+   FL T   + + R  SR G+ +     +   F  I + +       +   L + 
Sbjct: 846 VVIVFLRFLDTTPREKVSRVLSRPGINWGTMIPVYTNFGAIGIIYSVVSPLILIMMLITF 905

Query: 192 -GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG----------VPS 240
                   Y                    I  +  G +      L G          VP 
Sbjct: 906 SLFWFTYRYQMIYVSYAKAETNGLVYPKAINQLFTG-LYFLQLCLIGLFFLQEDGECVPH 964

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYL 269
            + + V  +   +       +F  +  YL
Sbjct: 965 AIIMIVTLSFTVLYQIVLNRAFGPLFTYL 993


>gi|308126578|ref|ZP_07663822.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109696|gb|EFO47236.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 93

 Score = 41.5 bits (96), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%)

Query: 266 SIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGL 325
            +  L   ++     +     +   I  + + P L+G    L  L  F  LV      G 
Sbjct: 6   FVAYLQLDSVSFMLTVVSIYLLLNLIESQFVTPTLLGRRFNLNPLVIFMWLVFWGWLWGG 65

Query: 326 LGLFIGPVLMALIAVI 341
           +GL IG  L+  I ++
Sbjct: 66  MGLLIGVPLLVCINIL 81


>gi|283771112|ref|ZP_06344003.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus H19]
 gi|283459706|gb|EFC06797.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus H19]
          Length = 1510

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 90/317 (28%), Gaps = 32/317 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    +  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+  I 
Sbjct: 659 LNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGFIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             + +              +++   + L G +   ++   ++ + VG  +    +  +FG
Sbjct: 709 FFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG---VVRYFG 756

Query: 316 LVGGVRTMGLLGLFIGP 332
            +      G+ G+  G 
Sbjct: 757 GLLKGLISGIWGVVKGI 773


>gi|282917301|ref|ZP_06325056.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus D139]
 gi|282318928|gb|EFB49283.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus D139]
          Length = 1510

 Score = 41.5 bits (96), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 90/317 (28%), Gaps = 32/317 (10%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    +  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+  I 
Sbjct: 659 LNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGFIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
             + +              +++   + L G +   ++   ++ + VG  +    +  +FG
Sbjct: 709 FFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG---VVRYFG 756

Query: 316 LVGGVRTMGLLGLFIGP 332
            +      G+ G+  G 
Sbjct: 757 GLLKGLISGIWGVVKGI 773


>gi|71410556|ref|XP_807567.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871596|gb|EAN85716.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 687

 Score = 41.5 bits (96), Expect = 0.22,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 68/254 (26%), Gaps = 22/254 (8%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
            G       W   L +          FL              F  ++       +     
Sbjct: 412 RGDPLLRVDWLSVLQNLLRRWRPFFAFLTQLLFGLGSNMMGLFDSVYATMLFVCVLRYFL 471

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                   + +++ L  +       + + I R +    R+       ++     +    +
Sbjct: 472 QLEHTILYYGVAKMLRVIHPQGGEKHARMIEREITVSFRTLLQSFWHLSWFHFCITFCLF 531

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLF-------LWGA 286
                P+    G+I+++ A+ P               +  N   +           +W  
Sbjct: 532 NAWSFPTPFFCGMISSLTAVFPLTPKWFSPVAFALGSVFFNAVASDGFLGAAVDQRVWSC 591

Query: 287 IELFIVDKTLRPFL-VGGPIK--------------LPFLPTFFGLVGGVRTMGLLGLFIG 331
              F+        L V   ++              LP       LV G  T G+ G+ +G
Sbjct: 592 FLAFLASYADEWLLCVSRGLRGNPLKDFTGVKREQLPTFVVGTALVLGYVTYGVRGILLG 651

Query: 332 PVLMALIAVIWKES 345
           P+ + +  V++   
Sbjct: 652 PMTVIVAKVLFDNW 665


>gi|83775116|dbj|BAE65239.1| unnamed protein product [Aspergillus oryzae]
          Length = 1191

 Score = 41.5 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/280 (7%), Positives = 65/280 (23%), Gaps = 14/280 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G    +  A+++     P+        +   +     +   +    F+   LF
Sbjct: 697 WVISAVQGILPALFLAILMAVL--PLILRFLCRTQGVHTGMAVELTVQNYYFAFLFVQLF 754

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++S V         +      +    + S +  + +S      +     
Sbjct: 755 LVVAISSSFSTIISNVTN-VTSWPQLLAENIPLSSNYFFSYMILQAMSVSAGALVQVVNL 813

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 814 VSWFILGPLLDTTARTKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFNVIT 873

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +   V +              G            G+       +    +     G   
Sbjct: 874 FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYFMEVCLIGLFFLVRDVQGT-- 931

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                   +  KG       + +       +++    P +
Sbjct: 932 --------VACKGQAICMIVVLILTVGYQLLLNDAFGPLI 963


>gi|317157287|ref|XP_001826372.2| hypothetical protein AOR_1_1328054 [Aspergillus oryzae RIB40]
          Length = 1167

 Score = 41.1 bits (95), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/280 (7%), Positives = 65/280 (23%), Gaps = 14/280 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             +  ++G    +  A+++     P+        +   +     +   +    F+   LF
Sbjct: 673 WVISAVQGILPALFLAILMAVL--PLILRFLCRTQGVHTGMAVELTVQNYYFAFLFVQLF 730

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++S V         +      +    + S +  + +S      +     
Sbjct: 731 LVVAISSSFSTIISNVTN-VTSWPQLLAENIPLSSNYFFSYMILQAMSVSAGALVQVVNL 789

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  +    +R           + +      +       +   + S    +F    
Sbjct: 790 VSWFILGPLLDTTARTKWARTTNLNQMQWGTFFPVYTTLASIGLIYCVISPLILVFNVIT 849

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +   V +              G            G+       +    +     G   
Sbjct: 850 FGLFWFVYRYNTLYVTKFRFDTGGLLFPKAINQLFTGIYFMEVCLIGLFFLVRDVQGT-- 907

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                   +  KG       + +       +++    P +
Sbjct: 908 --------VACKGQAICMIVVLILTVGYQLLLNDAFGPLI 939


>gi|328474046|gb|EGF44854.1| membrane protein [Lactobacillus rhamnosus MTCC 5462]
          Length = 135

 Score = 41.1 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 1/97 (1%)

Query: 16  IMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFI 75
           I ++    + FL     P + A I+ + + PI +    K          +  + ++ L +
Sbjct: 37  IAWVFQPVVDFLGIIAPPFIFAGILFYLTVPIINRLE-KAGLHRGLAIGLLFIVLISLLV 95

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
             LL        ++  +V                L+D
Sbjct: 96  WGLLRFIPAVSNQITSIVDSAPQIFTEIGKWLDDLND 132


>gi|225554528|gb|EEH02825.1| palmitoyltransferase pfa5 [Ajellomyces capsulatus G186AR]
          Length = 502

 Score = 41.1 bits (95), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 46/214 (21%), Gaps = 8/214 (3%)

Query: 31  FAPVLSALIIGFTSWPIYS-----SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYG 85
             PVL  LI+ +  W           +     S      +    ++  +I+ +  L  Y 
Sbjct: 15  VIPVLLGLILIYACWTFTRSLCIEYLLDSTTSSRNPRIGVTIGLLVAFYILLIALLVSYL 74

Query: 86  MLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNG 145
            L +  + +        G      L +       S+   +   +        E       
Sbjct: 75  RLLVALIWN--PDYIPRGPQYVESLVEAKSSKRRSKSRRRRERNSNKGIKDEEWHGLGAA 132

Query: 146 IDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ-LDSLGEHLFPAYWKKIS 204
                  A   G   L+        +           +  Q   D            +  
Sbjct: 133 FRRPAESAYPVGASGLEAFYLKDVFVCKEDGRPAWCSTCYQFKADRAHHCREVGRCIRKM 192

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                 +       +     + L     +    +
Sbjct: 193 DHFCPWVGGVVSESSFKFFIQFLFYALLFTTFNL 226


>gi|319783037|ref|YP_004142513.1| MscS Mechanosensitive ion channel [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168925|gb|ADV12463.1| MscS Mechanosensitive ion channel [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 828

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 80/282 (28%), Gaps = 15/282 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFT--SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +SL   + F A ++  +I+       P  +   S +   +    +   + +  +    L 
Sbjct: 358 LSLTIARSFVATIIVGIILILMAMLRPFKARDGSWRPWPAWLRYLSLGLGLFTIIAALLG 417

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           ++     + ++ +V+   L   +               + S           +  +    
Sbjct: 418 YIGLALFVSLQVVVTGTALITAYI-------------GFLSAQAIGEEGAFANTSVGRWL 464

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              ++  D           + ++  + ++F+ + L  +      I      L   +    
Sbjct: 465 SANSSYEDTALDQLGLVVSVAINVMIVLVFLPLILLMWGFQPGDIQAWAYKLATGINIGS 524

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                  +   I    +G  +    +G + GS      V + V   +  A+       A 
Sbjct: 525 VTISVTGILSGIVVFVIGYFLTRWFQGWLDGSVMARGKVDTGVRNSIRLAVGYAGVALAA 584

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   + +   L    +         G     +V   +   ++
Sbjct: 585 LVGISAAGIDLSSLALVAGALSLGIGFGLQNVVSNFVSGLIL 626


>gi|300744168|ref|ZP_07073187.1| CAAX amino protease family protein [Rothia dentocariosa M567]
 gi|300379893|gb|EFJ76457.1| CAAX amino protease family protein [Rothia dentocariosa M567]
          Length = 823

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 74/268 (27%), Gaps = 14/268 (5%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPL 78
           +++  +YF+          L         Y            +  V  T  V    ++ +
Sbjct: 100 LLIAGIYFVLLLIVSFAL-LAFAVMLRVPYDYLTD---LQRIYANVFKTPLVFIALLITI 155

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
           + +       +  L++           +   +     G++    +     +      L  
Sbjct: 156 IPVIPAIF--IARLITNFKPLG-LIHSIAGRMRWSYLGVFLGFGFLIFGLYYVGFATLDG 212

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
           +    N +  +        ++ +   +        L F      ++ + L +        
Sbjct: 213 SLTTQNSVHPLNSGMFWLYIVLILLIVPFQCYAEELLFRGYLMQTVGRWLKN--PVWAII 270

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG-SAYWLAGVPSHVALGVITAIMAMI--- 254
               I  ++        L +  +A+  G +   +    AG+  H+A  V   I  ++   
Sbjct: 271 IPAPIFMVLHGYGLWGLLSVLTMALIAGFLCWYTGGLEAGIGLHIANNVSIFIFGLLGLE 330

Query: 255 -PGGAPISFTAVSIYLLIKGNIFNATCL 281
            P GA      +     +   +  A  +
Sbjct: 331 DPFGAVREEQPLDFVQALILQLAFAGLV 358


>gi|241767159|ref|ZP_04764919.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
 gi|241362236|gb|EER58275.1| conserved hypothetical protein [Acidovorax delafieldii 2AN]
          Length = 276

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 58/223 (26%), Gaps = 3/223 (1%)

Query: 119 ASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFY 178
             EL  K  +   +        ++     ++   A    M    +   ++F  I L    
Sbjct: 46  VLELRLKLPADMAAHLPEGAAEIQRIIASYLGAKAGALAMAGRAWLGGLLFAYIGLLIGA 105

Query: 179 RDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV 238
                                         +++ + F       +   L L     L G+
Sbjct: 106 LAAVRSPAHARGPLAQQLRERIVLFGEAFGQIVAAQFWIAAFNTLLTALFLLFVLPLWGL 165

Query: 239 --PSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
             P    L  +T +  ++P    +   AV   + +      A     +  +        +
Sbjct: 166 ALPYTPVLITLTFVAGLVPIVGNLLCNAVITLVGLSVAPLAAAACLGFLVLIHKAE-YVI 224

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              +VG   ++        +       G  GL   P+  A + 
Sbjct: 225 NAKVVGQRTQIGVWELLSVMFVAEAVFGPAGLVAAPLFYAYLK 267


>gi|50120974|ref|YP_050141.1| putative bifunctional enzyme including aminotransferase and chitin
           synthase [Pectobacterium atrosepticum SCRI1043]
 gi|49611500|emb|CAG74948.1| putative bifunctional enzyme including aminotransferase and chitin
           synthase [Pectobacterium atrosepticum SCRI1043]
          Length = 1026

 Score = 41.1 bits (95), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 7/234 (2%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           + + ++   L F+  F  P   A+++     P+ S             ++I   ++    
Sbjct: 382 IALSLLWGMLQFIAQFIMPAFVAILLATGVHPLASHI-----LPDAAPSLITAAAIGMAL 436

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  ++++    M     L S+V    ++ +     L  + GG +   L    +     + 
Sbjct: 437 LFLVVWISILFMSRSTTLTSEV--GTRYHVSAMLLLGALMGGAFVFTLRVAPIPSIGLMG 494

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
           +          +  +         + L   L  +F +    +   +   +S     L  +
Sbjct: 495 VALFLLCLAISLHSLRYLRQFIRWMPLYLMLLPVFSLYLTTYSIANINDVSWGTKGLTTN 554

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVIT 248
                 +K        +   +   ++ A+   L+         V    +     
Sbjct: 555 HVEENKQKSWAATRNKVLFIWSACSLSAVLLFLLTLPNTQWMFVIQCASTFFCA 608


>gi|323158299|gb|EFZ44374.1| inner membrane domain protein [Escherichia coli E128010]
          Length = 100

 Score = 41.1 bits (95), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 1/92 (1%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           R    +P+ I   +I+      ++F  G  AP+L A+++ +          S    S  +
Sbjct: 10  RRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQS-IGCSRRW 68

Query: 62  LAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
              I  V  + + ++    +      +   L+
Sbjct: 69  ATSIVLVVFVGILLLMAFVVLPIAWQQGIYLI 100


>gi|167390786|ref|XP_001739501.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165896774|gb|EDR24101.1| hypothetical protein EDI_198900 [Entamoeba dispar SAW760]
          Length = 140

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 3/140 (2%)

Query: 220 IIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           ++ I +  +    + LA +P  +   +I A++A++P  + +     +  +L         
Sbjct: 4   LLFIFKFTLTFVTFSLAHLPYKMVCSIICALLAILPAFSNMIVWLPAGLVLFFQGNTTG- 62

Query: 280 CLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
              +W      +    +  +       +        +V GV   G+ G  +GP++  +  
Sbjct: 63  --MIWFISVHAVTYFIIDGWFYSFIPDIIPYFVGLSVVFGVYVFGITGCVLGPLVFVMTM 120

Query: 340 VIWKESIMAIKENKEKISSN 359
            +    I+  +  K+KI  +
Sbjct: 121 TLKDIFILQNQRLKQKIKQD 140


>gi|68072871|ref|XP_678349.1| hypothetical protein [Plasmodium berghei strain ANKA]
 gi|56498785|emb|CAH97129.1| conserved hypothetical protein [Plasmodium berghei]
          Length = 441

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 62/201 (30%), Gaps = 4/201 (1%)

Query: 148 FIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIV 207
           F       F M   D  +  +    AL++      S+   L  L   L           +
Sbjct: 37  FFVLIFLNFFMFTFDAIIQAMIFFTALYYLILSKKSVLNYLKDLL--LVVDPSSIFFYNI 94

Query: 208 PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSI 267
            K +++  +          + +   +     P      ++  I+++IP  +P     + +
Sbjct: 95  TKSLKAIIICTLKRIYFYTMYIWLIFSFFQFPIIYVPTLMCMILSLIPIISPEILILIIV 154

Query: 268 YLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLG 327
             L          + L+  I  F +       +      +        L   + T G  G
Sbjct: 155 LHLWIIQKQKIISIILF--IVNFFIYLYFTTTIYTEIPYIHAWLVSLSLFLSITTFGSKG 212

Query: 328 LFIGPVLMALIAVIWKESIMA 348
           + + P + ++  ++ + +I  
Sbjct: 213 VILRPFIASIPLILHQIAINQ 233


>gi|218512897|ref|ZP_03509737.1| putative permease protein [Rhizobium etli 8C-3]
          Length = 98

 Score = 41.1 bits (95), Expect = 0.27,   Method: Composition-based stats.
 Identities = 8/60 (13%), Positives = 16/60 (26%)

Query: 6  LNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVI 65
          L  Q      ++   +  LY       P ++ + I +   P+                 I
Sbjct: 39 LKRQIFFWLAVLVFFIAFLYVFSSILLPFIAGMAIAYFLDPVADRLERLGLSRMMATVGI 98


>gi|313124083|ref|YP_004034342.1| ABC multidrug transporter, ATPase and permease component
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280646|gb|ADQ61365.1| ABC-type multidrug transport system, ATPase and permease component
           [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 523

 Score = 41.1 bits (95), Expect = 0.28,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 77/266 (28%), Gaps = 15/266 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A+ I +      +            L  +   +V+ + +   L L Y  M     ++  V
Sbjct: 25  AVFIAYVFQKFINF----AGNPKGSLLQLTIKAVVGIVLFACLALIYQIMQ--ANIIKDV 78

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
            L  +         SD P   +     T  L   +S ++ +E  +  NG+ FI  FA+  
Sbjct: 79  NLKIKEQATKYLLYSDNPDPKFDLSFMTNDLKQVESHRVEAELDIIFNGLQFIAAFAAAM 138

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
              +    + ++  +         G  I           +     K +  +   I  +  
Sbjct: 139 LSSWALSLIFLVASLAPGLLQNVFGPKI-----EAASSAWEGENSKYTEAMTDTINFSAF 193

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALG--VITAIMAMIPGGAPISFTAVSIYLLIKGN 274
                   + +     ++   + + +A           +I   A +    +  + L    
Sbjct: 194 ARL-YDAEDSIYSRMLHYSQRMETALAKMKKAEMVTTEVITSFAYVCSMIIP-FSLGIYF 251

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFL 300
           +           +   + +  + P +
Sbjct: 252 VTQGQITLGTFMMISQLANNFINPIV 277


>gi|219685972|ref|ZP_03540763.1| membrane protein [Borrelia garinii Far04]
 gi|219672489|gb|EED29537.1| membrane protein [Borrelia garinii Far04]
          Length = 84

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 10/52 (19%), Positives = 19/52 (36%)

Query: 291 IVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
           ++   L P + G  + +        L       G++GL I      ++ VI 
Sbjct: 1   MIGNILEPKMQGKRLDISPFLLLCFLFFWGWLWGIVGLLIAYPFTVIVKVIV 52


>gi|167537930|ref|XP_001750632.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163770928|gb|EDQ84605.1| predicted protein [Monosiga brevicollis MX1]
          Length = 683

 Score = 41.1 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 9/201 (4%)

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
            AS F +    Y   ++   I  +          + +  +     P    +I   +   I
Sbjct: 394 TASNFLLKIGAYSSQLVAFFIFFYEMTSAEEDPLESVVRVMLPASPRSRDRILGQIQAAI 453

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG-----APISFTAVS 266
            ++F     +A    ++  ++Y L G+P       ++  +++           I   A+ 
Sbjct: 454 VASFQIPLAMASVHAMITLTSYSLLGIPFTYFATFLSFFLSLTYIVNPLAVPAIWACAIG 513

Query: 267 IYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV----GGPIKLPFLPTFFGLVGGVRT 322
           +  LI G  + A    L       +    +   +        +      T F +V G   
Sbjct: 514 VPPLITGTNYFALLRGLLLLAAHILAYSFMDARVFQLEEARGLTHNPGLTIFAVVLGYYA 573

Query: 323 MGLLGLFIGPVLMALIAVIWK 343
            G  GL +GP+   L+ VI+ 
Sbjct: 574 FGTQGLIVGPLAFYLLTVIYN 594


>gi|70734128|ref|YP_257768.1| hypothetical protein PFL_0626 [Pseudomonas fluorescens Pf-5]
 gi|68348427|gb|AAY96033.1| membrane protein, putative [Pseudomonas fluorescens Pf-5]
          Length = 336

 Score = 41.1 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 3/145 (2%)

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIP 255
                + +    ++ +      +     G+ L     L GV  P    L V+T ++ ++P
Sbjct: 185 DRLHLLVQAFRNIVFAQIKISLLNTFFTGIFLALILPLFGVKLPLTKTLIVLTFLLGLLP 244

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFG 315
               +    +   + +  +I+ A     +      +    L   +VGG I          
Sbjct: 245 VIGNLISNTLITIVGLSLSIWVAVAALGYLIFIHKLE-YFLNARIVGGQISAKSWELLLA 303

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAV 340
           ++      GL G+  GP+  A +  
Sbjct: 304 MLVFEAAFGLPGVVAGPIYYAYLKS 328


>gi|326476992|gb|EGE01002.1| glucosyltransferase [Trichophyton equinum CBS 127.97]
          Length = 625

 Score = 40.7 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 37/338 (10%), Positives = 85/338 (25%), Gaps = 36/338 (10%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   I F+  +    +  +FAPV+ A ++G    P       +   +      + T+   
Sbjct: 238 LWASIFFVAALGFKQMSLYFAPVVFAYLLGICFSP-------RIRPNRLLSIALITIVAF 290

Query: 72  CLFIVPLLFL--------------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-- 115
            +   PLL                    M  +   + +     Q  + + + +  I    
Sbjct: 291 AVLFTPLLAGSLADWYRNIPGPDNLPPLMKSLPIQIHETSWLYQVVVQLTQCIHRIFPFA 350

Query: 116 ----GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
                   + +W    +  +  K              +        MI       ++   
Sbjct: 351 RGLFEDKVANVWCAIHTFYKLNKFDPSLLKLAALGATLITIMPSCLMIGRYPRTHLLPYA 410

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +A   +     S      S+   L P      S          ++G+  +     +    
Sbjct: 411 LASTGWGFFLCSFQVHEKSVLLPLLPMTLLLGSAGGLSKEIRAWVGLANMLGVWTMFPLL 470

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 +P  V   +   ++ + P    +      A +   L           +    + 
Sbjct: 471 KRDELRIPYAVLTLLWAYLLGLPPMSLDLYRSRSAAQNSVELFTTTKLIHISYYAAMLVW 530

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +      P         P L      + G    G++
Sbjct: 531 HLLESNVAPPPTK------PDLWVVLNALIGASGFGII 562


>gi|258573977|ref|XP_002541170.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
 gi|237901436|gb|EEP75837.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
          Length = 876

 Score = 40.7 bits (94), Expect = 0.30,   Method: Composition-based stats.
 Identities = 26/280 (9%), Positives = 73/280 (26%), Gaps = 15/280 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE-SSTFLAVIATVSVMCLFIVPLLF 80
           + L  +  F   +L A+++     PI    +++     +T    + T +    F V  +F
Sbjct: 454 LILGLITAFLPAILLAVLMALL--PIVLRLMARLGGVPTTAAVELRTQNFYFGFQVVQVF 511

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L           V+K++   Q    +           + +    + L+      +     
Sbjct: 512 LVTTIASAASSAVTKIIQKPQEAASLLAENIPKASNFYIAYFILQGLTFSSGALLQVVGL 571

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           + +  +  +     R           + +  +          +I+    +     F    
Sbjct: 572 IVSKILGKLLDNTPRKMYKRWSTLSGLGWGTVFPVLTNLCVIAITYAAIAPLVLGFATVG 631

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
             +  I  +                             P  +    +   + +I     +
Sbjct: 632 LYLFYIAYRYNMLYV-----------TNANIDTKGMIYPRALQHTTVGCYLLIICLIG-L 679

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
                +      G +       ++  I    +++ + P L
Sbjct: 680 FAIGTASDRSALGPMILMIICGVFTVIYHLSLNQAITPLL 719


>gi|313835076|gb|EFS72790.1| putative nitrite reductase, copper-containing [Propionibacterium
           acnes HL037PA2]
 gi|314928192|gb|EFS92023.1| putative nitrite reductase, copper-containing [Propionibacterium
           acnes HL044PA1]
 gi|314970021|gb|EFT14119.1| putative nitrite reductase, copper-containing [Propionibacterium
           acnes HL037PA3]
          Length = 912

 Score = 40.7 bits (94), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 80/326 (24%), Gaps = 30/326 (9%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-------IVPLLFLFYYGMLEMKELV 93
                 +  +   ++      L     V+ + +        +V    +          L 
Sbjct: 73  AILHNNLTDADRRRQVLRIRLLTAGIVVTFVGIVATQPWVTVVGAAIVGSMLTWYAFALA 132

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            +   A         W       +         +     ++      L  +    +  F 
Sbjct: 133 HQARHALPGRFDSTVWFYCAAACLLPLGATLGAIMAFSPIEPWRTRLLVAHQALNLLGFV 192

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               +  L      +          R G      +              +  +    + +
Sbjct: 193 GLTVIGTLMTLWPTVLRTKMQPAQDRHGKVSLYVMLIAVVVTTIGALCGLWWLAALGVTA 252

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G+ I  +G+ +           P       I  ++  +   A     A     L+  
Sbjct: 253 HIVGICI-VLGDLVACAVNKPPRDFPGFTMGAAICWMLVWLVWLA--WKLAAKGNGLLAD 309

Query: 274 NIFNATCLFLWGAIELFIVD--KTLRPFLVGGP--------IKLPFLPTF------FGLV 317
           +IF  +   + G +   ++     L P ++GG          K+             GLV
Sbjct: 310 DIFTLSVPVIVGFLLQLLIGAMSYLMPMVMGGGPKIVRATNAKMHAFGALRATITNAGLV 369

Query: 318 GGVRTMGLL----GLFIGPVLMALIA 339
             V  MG      G+ +  + +A   
Sbjct: 370 LWVLAMGSWTRRIGMVMAVIGLATFL 395


>gi|153940700|ref|YP_001391725.1| hypothetical protein CLI_2483 [Clostridium botulinum F str.
           Langeland]
 gi|152936596|gb|ABS42094.1| putative membrane protein [Clostridium botulinum F str. Langeland]
 gi|295319751|gb|ADG00129.1| putative membrane protein [Clostridium botulinum F str. 230613]
          Length = 213

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 54/166 (32%), Gaps = 4/166 (2%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                ++  +     ++++F   D + I + +            K     + ++I+    
Sbjct: 30  ASYTTEWIFAYFIASLSIYFILVDKYVILENIKKYIGSNEFEKIKDKIYKLKEIIKIEC- 88

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
               + I   L       +  + +++ LGV+  I+ ++P    +      I        +
Sbjct: 89  ---FLVIFTTLQTIIGLKILNINNYLMLGVLCGILDILPYIGTVVIFLPLILYQFYTKNY 145

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                 +   + L I  + L    +   ++LP L     +  G + 
Sbjct: 146 IIFLGLICLYLLLIITRQILETKFMSSKLQLPALAIIISIYIGFKI 191


>gi|5708232|emb|CAB52394.1| unnamed protein product [Rhodoblastus acidophilus]
          Length = 151

 Score = 40.7 bits (94), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 9  QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
          Q     +++ +  + LY      AP ++ALI+G+   P+      K   S     V+   
Sbjct: 6  QVAFWLLMLVLASLGLYKFASVLAPFVAALILGYVLDPVADRLE-KIGLSRLLAKVVIVA 64

Query: 69 SVMCLFIVPLLFLFYY 84
          + + +  + +  L   
Sbjct: 65 AFVVVLTIVIFVLAPV 80


>gi|312872734|ref|ZP_07732799.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           2062A-h1]
 gi|311091776|gb|EFQ50155.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           2062A-h1]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEVALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|212711285|ref|ZP_03319413.1| hypothetical protein PROVALCAL_02357 [Providencia alcalifaciens DSM
           30120]
 gi|212686014|gb|EEB45542.1| hypothetical protein PROVALCAL_02357 [Providencia alcalifaciens DSM
           30120]
          Length = 1127

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 89/331 (26%), Gaps = 25/331 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVS----LYFLKGFFAPVLSAL---IIGFTSWPIYSSFIS 53
           MR  M     +    ++F         L   +     ++ ++   ++   + P       
Sbjct: 634 MRRRM-VRLSVPLLPLIFFSTYGMINPLKVSEDVIGQLVVSICLLLLCIFTIPFCKQVWK 692

Query: 54  KKEESSTFLAVIATVSVMCLFIVPLLFLFY------YGMLEMKELVSKVVLANQHGIPVP 107
           +     T   +I  ++   L ++ L+F  Y           +  L   V+    + + + 
Sbjct: 693 ETGSHLTRSILITLLTFSPLILIGLMFAGYYYTTLRLASRWLDSLYLLVLWYITYNVCLR 752

Query: 108 RWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSI 167
                     +   L  +  S  Q              I+ I + + R   + L    + 
Sbjct: 753 GLSLGARKLAYKRALERRAQSKQQEEAENEPIKEPPMTIELISQQSLRLTTMVLFIIFAF 812

Query: 168 IFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI---G 224
            F  I   F     F  S QL S                +  +I +  + +    +    
Sbjct: 813 AFYAIWSDFITIFSFLDSVQLWSYSATSAEGASIMKYVTLANLILAVVIVVVAWIMTRNL 872

Query: 225 EGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLW 284
            GL+         +       + T +  +I     I+   +      +     A      
Sbjct: 873 PGLLEVLVLSRLKLRQGSTYAITTMLTYVIVSIGAIASLGMIGVTWNQLQWLAAALTVGL 932

Query: 285 GAIELFIVDKTL--------RPFLVGGPIKL 307
           G     I    +        RP  +G  + +
Sbjct: 933 GFGLQEIFANFVSGIILLFERPIRIGDTVTI 963


>gi|329920931|ref|ZP_08277480.1| ABC transporter, ATP-binding protein [Lactobacillus iners SPIN
           1401G]
 gi|328935496|gb|EGG31967.1| ABC transporter, ATP-binding protein [Lactobacillus iners SPIN
           1401G]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEVALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|309803643|ref|ZP_07697733.1| ABC transporter, ATP-binding protein [Lactobacillus iners LactinV
           11V1-d]
 gi|308164241|gb|EFO66498.1| ABC transporter, ATP-binding protein [Lactobacillus iners LactinV
           11V1-d]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEVALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|169841325|ref|ZP_02874438.1| hypothetical protein cdivTM_29508 [candidate division TM7
           single-cell isolate TM7a]
          Length = 48

 Score = 40.7 bits (94), Expect = 0.35,   Method: Composition-based stats.
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 303 GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPV 333
             +++  + T   ++ G    G+ G FI   
Sbjct: 17  KSVEMHPITTLLVVLIGGALFGIGGAFIAIP 47


>gi|309806911|ref|ZP_07700895.1| ABC transporter, ATP-binding protein [Lactobacillus iners LactinV
           03V1-b]
 gi|315654069|ref|ZP_07906985.1| ABC superfamily ATP binding cassette transporter [Lactobacillus
           iners ATCC 55195]
 gi|325912511|ref|ZP_08174901.1| ABC transporter, ATP-binding protein [Lactobacillus iners UPII
           60-B]
 gi|308166678|gb|EFO68873.1| ABC transporter, ATP-binding protein [Lactobacillus iners LactinV
           03V1-b]
 gi|315488765|gb|EFU78411.1| ABC superfamily ATP binding cassette transporter [Lactobacillus
           iners ATCC 55195]
 gi|325478184|gb|EGC81306.1| ABC transporter, ATP-binding protein [Lactobacillus iners UPII
           60-B]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEVALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|312874033|ref|ZP_07734068.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           2052A-d]
 gi|311090373|gb|EFQ48782.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           2052A-d]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 87/291 (29%), Gaps = 22/291 (7%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +        +   L+ + T+ V+ 
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVISQQMVNWV------NKPKLSYLFTIGVVA 54

Query: 73  LFIVPLLFLFYYGMLEMK-ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
           L  + + +L      ++   +V K+    +  +      S+ P     +  +T  L   +
Sbjct: 55  LVGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIE 114

Query: 132 SLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSL 191
           + K+ +E  + TN I FI    +          + ++   +   F    G +I ++    
Sbjct: 115 TDKVEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEW 174

Query: 192 GEHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI 250
            +         K + +     R       +    +         L  +            
Sbjct: 175 DKSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEAALLKLNF------WQGF 228

Query: 251 MAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                     S   ++   L    +           +   + +  + P ++
Sbjct: 229 TNETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|259500843|ref|ZP_05743745.1| ABC superfamily ATP binding cassette transporter [Lactobacillus
           iners DSM 13335]
 gi|302190704|ref|ZP_07266958.1| ABC transporter [Lactobacillus iners AB-1]
 gi|259167537|gb|EEW52032.1| ABC superfamily ATP binding cassette transporter [Lactobacillus
           iners DSM 13335]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.36,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEAALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|312874751|ref|ZP_07734770.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           2053A-b]
 gi|311089496|gb|EFQ47921.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           2053A-b]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEAALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|261334493|emb|CBH17487.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 706

 Score = 40.7 bits (94), Expect = 0.37,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 22/245 (8%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           WT               +     +       + F  ++    L ++   +         +
Sbjct: 457 WTDVAQKLMERWQELFVYANQLLMKLGSNVLNLFDSVYAVMLLFVVMHHLLQLEHTVLYY 516

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++ L  L       + +KI   +     +        A     +    +     P+ +
Sbjct: 517 ILAKLLKVLDPQCGEYHARKIETEITNSFHTLLQSFWHKACFRFCITFCLFKCWSFPTPL 576

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI-----KGNIFNA------TCLFLWGAIELFI 291
             GV++A++A++P            ++        G+ F A                 ++
Sbjct: 577 LFGVVSAVIALLPLAPKWISPVALTFMYKLFCAAYGDGFAAALADPCLWCCFLAFCATYM 636

Query: 292 VDKTL---------RPFLVG--GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            ++ L         R  +    G  KLP       LV G    G+ G+F+GP+ + L  V
Sbjct: 637 DERLLCVSQGFLDDRSSVASAPGQWKLPTAVISTALVLGFFQYGVCGIFLGPMTVVLAKV 696

Query: 341 IWKES 345
           ++   
Sbjct: 697 LYDNW 701


>gi|309809163|ref|ZP_07703036.1| ABC transporter, ATP-binding protein [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170608|gb|EFO72628.1| ABC transporter, ATP-binding protein [Lactobacillus iners SPIN
           2503V10-D]
          Length = 525

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 79/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++       F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFITAIIASIAGSLPLTIVFMLASFWPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEVALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|294674483|ref|YP_003575099.1| hypothetical protein PRU_1810 [Prevotella ruminicola 23]
 gi|294471907|gb|ADE81296.1| putative membrane protein [Prevotella ruminicola 23]
          Length = 1121

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 70/284 (24%), Gaps = 22/284 (7%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L            ++V         +      +      + L  + L    S  
Sbjct: 53  GAPFFMLTANLFSHFASDATQVARMVNTMSALLSATCILFLFWTITHLTRRLLISNWSEL 112

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            + +                     F D             +       +   +    + 
Sbjct: 113 SMPKLIAIEA-----SGMVGALIYTFSDTFWFSAVEGEVYAYSSAFTAVVFWLILKWEDQ 167

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  +   ++   +    +G+ ++ +     +   Y+    P     G + A+   +
Sbjct: 168 ADEPHSDRWLILI-MYMTGLSIGVHLLNLLCVPAIVLVYYYRRFPDANLKGSLIALAVSV 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATC-----------LFLWGAIELFIVDKTLRPFLVGG 303
              A + +  V   + + G                  +     +   ++           
Sbjct: 227 VILAAVLYGVVPGIITVGGWFELFFVNTLGMPFNTGEIIYLILLVSCVIWAVYETQTQKH 286

Query: 304 PIKLPFLPTFFGL-VGGVRTMGLLG---LFIGPVLMALIAVIWK 343
            + +  L     + + G+   G  G     IG V++A++  + K
Sbjct: 287 SLTIQNLAFLLSVGMLGIPFYG-WGWSAFLIGVVVLAVLWFLLK 329


>gi|195387660|ref|XP_002052512.1| GJ21180 [Drosophila virilis]
 gi|194148969|gb|EDW64667.1| GJ21180 [Drosophila virilis]
          Length = 1104

 Score = 40.7 bits (94), Expect = 0.38,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 27/302 (8%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
             +  +   + P   S   K+            +S++   ++PL  LF     E  ++V 
Sbjct: 422 ALSWSVSMLAIPFVVSLCRKRSIR--------LLSIVGGLVMPLGILFTSFATEFGQVVF 473

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
              +    G+ + R  S +  G +             S + +          + + +   
Sbjct: 474 SYGIVFGIGVSMVREASTVMLGNYFKRRRQFVEMVAMSGEGVGIALFSVILKEGVGKAGW 533

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG--EHLFPAYWKKISRIVPKVIR 212
           R G+  +    ++ F +  ++          + +  L            K+++ V    R
Sbjct: 534 RLGLQIVAALTALSFFMGLMYRPASLYHPQRRAIQHLKNQRKKLREKKPKLTQEVESPTR 593

Query: 213 STF--LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
             F  +        + L++ S+    G+ + + L  + A                 + LL
Sbjct: 594 YLFLDISSLKSVTVKILLMTSSVAAFGIYTPMFLMALNAAKE--------GSDVQELVLL 645

Query: 271 IKG-NIFNATCLFLWGAIE--LFIVDKT-LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                I  A  + L GA+    F++ +  +   +V   + +        ++     MG  
Sbjct: 646 QTFLGISMALGVVLAGALLRRCFVIRQFVINTKIVS-QLFIS--IVALAILFLSFVMGYK 702

Query: 327 GL 328
           GL
Sbjct: 703 GL 704


>gi|326472147|gb|EGD96156.1| glucosyltransferase [Trichophyton tonsurans CBS 112818]
          Length = 625

 Score = 40.7 bits (94), Expect = 0.39,   Method: Composition-based stats.
 Identities = 36/338 (10%), Positives = 84/338 (24%), Gaps = 36/338 (10%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   I  +  +    +  +FAPV+ A ++G    P       +   +      + T+   
Sbjct: 238 LWASIFLVAALGFKQMSLYFAPVVFAYLLGICFSP-------RIRPNRLLSIALITIVAF 290

Query: 72  CLFIVPLLFL--------------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG-- 115
            +   PLL                    M  +   + +     Q  + + + +  I    
Sbjct: 291 AVLFTPLLAGSLADWYRNIPGPDNLPPLMKSLPIQIHETSWLYQVVVQLTQCIHRIFPFA 350

Query: 116 ----GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
                   + +W    +  +  K              +        MI       ++   
Sbjct: 351 RGLFEDKVANVWCAIHTFYKLNKFDPSLLKLAALGATLITIMPSCLMIGRYPRTHLLPYA 410

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
           +A   +     S      S+   L P      S          ++G+  +     +    
Sbjct: 411 LASTGWGFFLCSFQVHEKSVLLPLLPMTLLLGSAGGLSKEIRAWVGLANMLGVWTMFPLL 470

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 +P  V   +   ++ + P    +      A +   L           +    + 
Sbjct: 471 KRDELRIPYAVLTLLWAYLLGLPPMSLDLYRSRSAAQNSVELFTTTKLIHISYYAAMLVW 530

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +      P         P L      + G    G++
Sbjct: 531 HLLESNVAPPPTK------PDLWVVLNALIGASGFGII 562


>gi|198274427|ref|ZP_03206959.1| hypothetical protein BACPLE_00575 [Bacteroides plebeius DSM 17135]
 gi|198272629|gb|EDY96898.1| hypothetical protein BACPLE_00575 [Bacteroides plebeius DSM 17135]
          Length = 1110

 Score = 40.4 bits (93), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 74/284 (26%), Gaps = 25/284 (8%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     ++V         +      +      + L  K +       
Sbjct: 53  GAPFFMLTANLFSQFASDATQVAKMVNIMSALMSAACILFLFWSITHLTKKLICPDDKEM 112

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +                     + D             +       +   +      
Sbjct: 113 TTGKLITIMG-----AGLVGALAYTWSDTFWFSAVEGEVYAYSSLFTAVVFWLILKWENR 167

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  +   ++   +    +G+ ++ +     +   Y+    P+    G + A+   +
Sbjct: 168 ANEPHSDRWLILI-AYLTGLSIGVHLLNLLCIPAIVLVYYYKKNPNANLKGSLIALAGSM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCL----------FLWGAIEL--FIVDKTLRPFLVG 302
              A + +  V   +   G  F    +           +   I L   I+      + V 
Sbjct: 227 ILVAVVLYGIVPGIV-KVGGWFELLFVNDFGLPFNTGVIIYMIILAASIIWGVYESYTVK 285

Query: 303 --GPIKLPFLPT--FFGLVGGVRTMGLLGLFIGPVLMALIAVIW 342
               + + FL T    G+       G   +FIG +++A++A+  
Sbjct: 286 SRKRMNISFLTTVGLLGIPFYGH--GWSSVFIGIIVLAILAIYL 327


>gi|312871284|ref|ZP_07731382.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           3008A-a]
 gi|325912235|ref|ZP_08174632.1| ABC transporter, ATP-binding protein [Lactobacillus iners UPII
           143-D]
 gi|311093298|gb|EFQ51644.1| ABC transporter, ATP-binding protein [Lactobacillus iners LEAF
           3008A-a]
 gi|325475894|gb|EGC79063.1| ABC transporter, ATP-binding protein [Lactobacillus iners UPII
           143-D]
          Length = 525

 Score = 40.4 bits (93), Expect = 0.40,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 89/290 (30%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I F+    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFMTALIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K + +     R       +    +         L  +         T I 
Sbjct: 176 KGNSKYTENVKETEMFSASARLYNTENNLWKRFKSSANTMEAALLKLNFWQGFTNET-IG 234

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            +      I+  A+ +YL+   NI   T +         + +  + P +V
Sbjct: 235 TIAYSVITIAPIALGVYLVSIKNITLGTLIM-----VSQLSNNFVNPVIV 279


>gi|187778980|ref|ZP_02995453.1| hypothetical protein CLOSPO_02575 [Clostridium sporogenes ATCC
           15579]
 gi|187772605|gb|EDU36407.1| hypothetical protein CLOSPO_02575 [Clostridium sporogenes ATCC
           15579]
          Length = 213

 Score = 40.4 bits (93), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 4/166 (2%)

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
                ++  +     ++++F   D ++I + +            K     + ++I+    
Sbjct: 30  ASYTTEWIFAYFIASLSIYFILVDKYAILENIKKYIGVNEFEKIKDKIYKLKEIIKIEC- 88

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIF 276
               + I       +   +  + +++ LGV+  I+ M+P    +      I        +
Sbjct: 89  ---FLVIFTTFQTITGLKILNINNYLILGVLCGILDMLPYIGTVVIFLPLILYQFYTKNY 145

Query: 277 NATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRT 322
                 +   + L I  + L    +   ++LP L     +  G + 
Sbjct: 146 VIFLGLICLYLLLIITRQILETKFMSSKLQLPALAIIISIYIGFKI 191


>gi|312218906|emb|CBX98851.1| similar to DUF221 domain protein [Leptosphaeria maculans]
          Length = 1252

 Score = 40.4 bits (93), Expect = 0.43,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 76/272 (27%), Gaps = 26/272 (9%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPI-YSSFISKKE----ESSTFLAVIATVSVMCLFIV 76
             + F++G   P+  A++      PI                   L      + + + + 
Sbjct: 727 WLISFIQGVLPPLFLAILFAVL--PITLRFLAGMTGTTTSGERELLVQNFYFAFVFVQLF 784

Query: 77  PLLFLFYYGMLEMKELVSKVVL----ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
            ++ +       +++LV+  +       ++      +          S      L     
Sbjct: 785 LVVSISTGITTAIEDLVNDPISVPATLAKNLPKAANYFFSYMILQSLSISSGTLLQIGAV 844

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYC-LSIIFMIIALFFFYRDGFSISQQLDSL 191
             I+   F+ T   + + R  SR G+ +     +   F  I + +       +   L + 
Sbjct: 845 AVIVFLRFMDTTAREKVSRVLSRPGINWGTMIPVYTNFGAIGIIYSVVSPLILIMMLITF 904

Query: 192 GEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV------------- 238
               F   ++ I     K   +  +    +      +      L G+             
Sbjct: 905 CLFWFTYRYQMIYVSYAKAETNGLIFPKAVNQLFTGLYFLELCLIGLFFLQRDTRNEAAC 964

Query: 239 -PSHVALGVITAIMAMIPGGAPISFTAVSIYL 269
            P  + + +I     +       +F  +  YL
Sbjct: 965 FPQAIIMIIILGFTVLYQFVLNRAFGPLFTYL 996


>gi|71755395|ref|XP_828612.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833998|gb|EAN79500.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 690

 Score = 40.4 bits (93), Expect = 0.45,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 22/245 (8%)

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
           WT               +     +       + F  ++    L ++   +         +
Sbjct: 441 WTDVAQKLMERWQELFVYANQLLMKLGSNVLNLFDSVYAVMLLFVVMHHLLQLEHTVLYY 500

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
            +++ L  L       + +KI   +     +        A     +    +     P+ +
Sbjct: 501 ILAKLLKVLDPQCGEYHARKIETEITNSFHTLLQSFWHKACFRFCITFCLFKCWSFPTPL 560

Query: 243 ALGVITAIMAMIPGGAPISFTAVSIYLLI-----KGNIFNA------TCLFLWGAIELFI 291
             GV++A++A++P            ++        G+ F A                 ++
Sbjct: 561 LFGVVSAVIALLPLAPKWISPVALTFMYKLFCAAYGDGFAAALADPCLWCCFLAFCATYM 620

Query: 292 VDKTL---------RPFLVG--GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAV 340
            ++ L         R  +    G  KLP       LV G    G+ G+F+GP+ + L  V
Sbjct: 621 DERLLCVSQGFLDDRSSVASAPGQWKLPTAVISTALVLGFFQYGVCGIFLGPMTVVLAKV 680

Query: 341 IWKES 345
           ++   
Sbjct: 681 LYDNW 685


>gi|213023974|ref|ZP_03338421.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 114

 Score = 40.4 bits (93), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 1/104 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
            ++ L ++ L +L        + L             +  WL  
Sbjct: 71  IIVMLMVLLLAYLGTSLNELARTLPQYRSSLVIPLQRIEPWLQR 114


>gi|296810150|ref|XP_002845413.1| receptor [Arthroderma otae CBS 113480]
 gi|238842801|gb|EEQ32463.1| receptor [Arthroderma otae CBS 113480]
          Length = 777

 Score = 40.4 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 30/318 (9%), Positives = 68/318 (21%), Gaps = 36/318 (11%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-----IVPLLFLFYYGMLEMKELVSK 95
            F S  +            T L       V   F      +P++ +           +S 
Sbjct: 276 AFISSLLVGKIGDIIGRRRTILYGSVVFFVGGAFQTFATGIPMMLIGRIIAGLGVGALST 335

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +V   Q  I  P     +    +   +     S              +       +    
Sbjct: 336 IVPVYQSEISPPHNRGQLACIEFTGNICGYAASVWVDYFCSYIQSDYSWRFPLFLQCVMG 395

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAYWKKISRIV----- 207
             + F    +      +       +G  +   L     L        ++ I   V     
Sbjct: 396 ALLGFGSLIICESPRWLLDHDHDEEGMVVIANLYGKGDLHNDKARQEYRDIKTNVLVTRQ 455

Query: 208 ------PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGA- 258
                   + +  +  + I    +     +   +     P            A++  G  
Sbjct: 456 EGERTYKDMFQRYYRRVFIAMSAQAFAQLNGINVISYYAPLVFESAGWVGRDAILMTGIN 515

Query: 259 ----PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP--FLPT 312
                +S       +   G         ++  I L  +   +        + +      T
Sbjct: 516 GITYLLSTIPPWYLVDRWGRRPILLWGAIFMIISLSAMSYFI-------HLNISATPALT 568

Query: 313 FFGLVGGVRTMGL-LGLF 329
              ++      G   G  
Sbjct: 569 VIFVMIYNAAFGFSWGPI 586


>gi|290559435|gb|EFD92767.1| hypothetical protein BJBARM5_0540 [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 314

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 2   RETMLNPQGIMRWMIMFIILVS-------LYFLKGFFAPVLSALIIGFTSWPIYSSF--- 51
           R ++     I   +++ +++          + +   F  V  A+II +  +   +     
Sbjct: 167 RRSLSFTSMIFVILLVLLVITYTINSFSYFWLIADVF-AVFLAVIIAYRLFVWANKLPIH 225

Query: 52  -ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLE 88
                         +A      +F +P L + Y    +
Sbjct: 226 SDLHLFGLRILSGFVALFGFFVIFFIPGLIITYLYPNQ 263


>gi|218513737|ref|ZP_03510577.1| hypothetical protein Retl8_08448 [Rhizobium etli 8C-3]
          Length = 104

 Score = 40.4 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%)

Query: 15 MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
          +I      +L  +  F   V+ + I+    +PI+ +            AV+  V  + L 
Sbjct: 3  IIGLFAYWTLVLIAPFALIVIWSAILAVALFPIFEALSRLIGNRPVIAAVVIVVFSLVLI 62

Query: 75 IVPLLF 80
          I PL  
Sbjct: 63 IAPLAL 68


>gi|300725922|ref|ZP_07059384.1| putative membrane protein [Prevotella bryantii B14]
 gi|299776773|gb|EFI73321.1| putative membrane protein [Prevotella bryantii B14]
          Length = 1105

 Score = 40.4 bits (93), Expect = 0.51,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 73/284 (25%), Gaps = 23/284 (8%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     S+V         +      +      S L  K L       
Sbjct: 47  GAPFFMLTANLFSQFVSDPSQVARMVNTMSALLSATCIMFLFWTISHLARKLLIDKWEEL 106

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +S+                   +           +   ++ +     +I   L    E 
Sbjct: 107 TMSKLIAIE------GSGLVGALIYTFSDTFWFSAVEGEVYAYSSAFTAIVFWLILKWED 160

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAI-MAM 253
                      ++   +    +G+ ++ +     +   Y+    P+    G + A+ ++ 
Sbjct: 161 HADEPHSDRWLVLITYMTGLSIGVHLLNLLCIPAIVLVYYYRKTPNANLKGSLIALAISF 220

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCL-----------FLWGAIELFIVDKTLRPFLVG 302
           +   A +      I  +  G  F    +            ++  + +  V   +    V 
Sbjct: 221 VIVAAVLYGVVPGIITV--GGWFELFFVNVLGCPFNTGEIIYIILLVTTVIWGIYESYVD 278

Query: 303 GPIKLPFLPTFFGLVGGVRTM---GLLGLFIGPVLMALIAVIWK 343
             +K   +     +          G   + IG +++A +  I  
Sbjct: 279 KSVKRSNIAFLLSIAMLGIPFYGYGWSAVLIGIIILAALYFIVN 322


>gi|328905875|gb|EGG25651.1| putative nitrite reductase, copper-dependent [Propionibacterium sp.
           P08]
          Length = 880

 Score = 40.0 bits (92), Expect = 0.51,   Method: Composition-based stats.
 Identities = 35/326 (10%), Positives = 80/326 (24%), Gaps = 30/326 (9%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-------IVPLLFLFYYGMLEMKELV 93
                 +  +   ++      L     V+ + +        +V    +          L 
Sbjct: 41  AILHNNLTDADRRRQVLRIRLLTAGIVVTFVGIVATQPWVTVVGAAIVGSMLTWYAFALA 100

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
            +   A         W       +         +     ++      L  +    +  F 
Sbjct: 101 HQARHALPGRFDSTVWFYCAAACLLPLGATLGAIMAFSPIEPWRTRLLVAHQALNLLGFV 160

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRS 213
               +  L      +          R G      +              +  +    + +
Sbjct: 161 GLTVIGTLMTLWPTVLRTKMQPAQDRHGKVSLYVMLIAVVVTTIGALCGLWWLAALGVTA 220

Query: 214 TFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKG 273
             +G+ I  +G+ +           P       I  ++  +   A     A     L+  
Sbjct: 221 HIVGICI-VLGDLVACAVNKPPRDFPGFTMGAAICWMLVWLVWLA--WKLAAKGNGLLAD 277

Query: 274 NIFNATCLFLWGAIELFIVD--KTLRPFLVGGP--------IKLPFLPTF------FGLV 317
           +IF  +   + G +   ++     L P ++GG          K+             GLV
Sbjct: 278 DIFTLSVPVIVGFLLQLLIGAMSYLMPMVMGGGPKIVRATNAKMHAFGALRATITNAGLV 337

Query: 318 GGVRTMGLL----GLFIGPVLMALIA 339
             V  MG      G+ +  + +A   
Sbjct: 338 LWVLAMGSWTRRIGMVMAVIGLATFL 363


>gi|315044833|ref|XP_003171792.1| sugar transporter STL1 [Arthroderma gypseum CBS 118893]
 gi|311344135|gb|EFR03338.1| sugar transporter STL1 [Arthroderma gypseum CBS 118893]
          Length = 755

 Score = 40.0 bits (92), Expect = 0.53,   Method: Composition-based stats.
 Identities = 30/318 (9%), Positives = 69/318 (21%), Gaps = 36/318 (11%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-----IVPLLFLFYYGMLEMKELVSK 95
            F S  +            T L       V   F      +P++ +           +S 
Sbjct: 236 AFISSLLVGKIGDIIGRRRTILYGSMVFFVGGAFQTFATGIPMMLVGRIVAGLGVGALST 295

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +V   Q  I  P     +    +   +     S              +  +    +    
Sbjct: 296 IVPVYQSEISPPHNRGQLACIEFTGNICGYAASVWVDYFSSYIQSDLSWRLPLFLQCVMG 355

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAYWKKISRIV----- 207
             + F    +      +       +G  +   L     L        +++I   V     
Sbjct: 356 ALLGFGSLIICESPRWLLDQDHDEEGMVVIANLYGKGDLHNDKARQEYREIKTNVLVTRQ 415

Query: 208 ------PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGA- 258
                   + +  +  + I    +     +   +     P            A++  G  
Sbjct: 416 EGERTYKDMFKRYYRRVFIAMSAQAFAQLNGINVISYYAPLVFESAGWVGRDAILMTGIN 475

Query: 259 ----PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP--FLPT 312
                +S       +   G         +   I L  +   +        + +      T
Sbjct: 476 GITYLLSTIPPWYLVDRWGRRPILLWGAILMIISLSAMSYFI-------HLNVSYTPALT 528

Query: 313 FFGLVGGVRTMGL-LGLF 329
              ++      G   G  
Sbjct: 529 VISVMVYNAAFGFSWGPI 546


>gi|295396956|ref|ZP_06807078.1| possible permease [Aerococcus viridans ATCC 11563]
 gi|294974809|gb|EFG50514.1| possible permease [Aerococcus viridans ATCC 11563]
          Length = 163

 Score = 40.0 bits (92), Expect = 0.54,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 59/153 (38%)

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +WK++     + I+        + +   ++ G  +W+  +     + +  +++A++P   
Sbjct: 6   FWKQVFLHTIQNIKLYVGAEAKLLLLTVIIYGVGFWVLDIHLAWLMAIGISLVALLPVIG 65

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVG 318
                   I +                 + + ++ + L+P L+G  +KLPF       + 
Sbjct: 66  AGVVFIPWILIEWLQGDTQVGWWLFAIYLGVELLTEILQPLLIGKDLKLPFWLPIVVTLM 125

Query: 319 GVRTMGLLGLFIGPVLMALIAVIWKESIMAIKE 351
                 L G+ +  +++ LI+  ++   +   E
Sbjct: 126 CTVAFNLFGVMVAGIVIPLISAYFQVKEIERAE 158


>gi|254518173|ref|ZP_05130229.1| PTS system [Clostridium sp. 7_2_43FAA]
 gi|226911922|gb|EEH97123.1| PTS system [Clostridium sp. 7_2_43FAA]
          Length = 659

 Score = 40.0 bits (92), Expect = 0.56,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 59/241 (24%), Gaps = 5/241 (2%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEES---STFLAVIA-TVSVMCLFIVPLLFLFYYGMLEM 89
            L A+++ F    +       K           +I   ++ + + I+    +       M
Sbjct: 233 FLGAILVAFIVGYLVKGLKKIKWPKVLQPLLAIMIIPLIATLIIMIIVTYLIGNPIANLM 292

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
             L S +   N+     P  +  I G M   +                 T          
Sbjct: 293 DGLYSGLTTLNETFAGAPFIIGAIIGAMIGFDFGGPVNKTALIFGTAVYTDTVAKFGIAN 352

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH-LFPAYWKKISRIVP 208
             F  +           +   + ++ F  +          S     +       I     
Sbjct: 353 ANFVPQTASQAAISVAPLGIWLASVLFKNKFTKDEKISASSAFGMGMVGVTEGAIPFAAS 412

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
             ++     +   A+  GLV        G        +I  I   IP    I   +  I 
Sbjct: 413 NPVQMITASVAGSALAGGLVSIFGVKFYGGIGSPLGAIIGYIEQPIPFITWILSISAGIL 472

Query: 269 L 269
           +
Sbjct: 473 V 473


>gi|330948977|gb|EGH49237.1| hypothetical protein PSYPI_45513 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 54

 Score = 40.0 bits (92), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 297 RPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIK 350
           +P+L+     LP +    G+ GG+   G +GLFIGP L+A+   +  + + + +
Sbjct: 1   KPYLISRGGNLPLVIVLLGVFGGLLAFGFIGLFIGPTLLAVAYSLLTDWVGSER 54


>gi|296813203|ref|XP_002846939.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
 gi|238842195|gb|EEQ31857.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
          Length = 1132

 Score = 40.0 bits (92), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/279 (8%), Positives = 66/279 (23%), Gaps = 10/279 (3%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
             L  ++G   P+  ++++     P+        +   +     +   +    F+   +F
Sbjct: 638 WLLSAIQGILPPLFLSILMALL--PLVLRFLSRNQGVHTGMAIELTVQNYYFAFLFVQIF 695

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           L          ++  +         +           + S +  + +S      +     
Sbjct: 696 LVVSISSSFSTIIDSLKNVL-SVPDLLAQNIPKASNYFFSYMILQAMSVSAGALVQIFAL 754

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           +    +  I    +R           + +      +       +   + S    +F    
Sbjct: 755 ISWFILAPILDNTARKKWARATNLNQMQWGTFFPVYTTLASIGLIYCIISPLIMVFNVLT 814

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AMI 254
             +  +V +              G            G+       +    +       + 
Sbjct: 815 FSLFWVVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMEVCLIGMFFLVRDEKKEVA 874

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
             G  I    V I   +     N     L   + + + D
Sbjct: 875 CEGQAICMIVVLILTALFQYFLNEAFNPLSLYLPITLED 913


>gi|304396965|ref|ZP_07378845.1| MscS Mechanosensitive ion channel [Pantoea sp. aB]
 gi|304355761|gb|EFM20128.1| MscS Mechanosensitive ion channel [Pantoea sp. aB]
          Length = 1109

 Score = 40.0 bits (92), Expect = 0.63,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 76/296 (25%), Gaps = 23/296 (7%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            P+L A +I          FI            A+      + L +  ++ L  +G LE 
Sbjct: 565 LPLLWAFMISAAFARPNGLFIVHFRWPQNRVARAMRYYSLSIGLIVPLIMLLIAFGNLED 624

Query: 90  KELVSKVVLANQHGI-----PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           ++  S +       I      V   L      ++  +         + L  L        
Sbjct: 625 RQFSSSLGRLCFILICGAISIVTVSLKRSGIPLYLDKEGNGENMVNRMLWNLMIAMPLMA 684

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +     + +    +      S+    + L  ++     +  Q   LG          + 
Sbjct: 685 ALASAVGYLATAQALLARLETSVAIWFLLLVIYHIIRRWMLIQRRRLGFDRARQRRADML 744

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               +       G       E         +  +   ++   +  + +++   A +S   
Sbjct: 745 ANRARSEEEKEQGSLNTDAIE-----IEEPVIDLD-AISAQSLRLVRSILTLIALVSVIV 798

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +   +           L+        +    ++P  +G             ++  +
Sbjct: 799 LWSEIHSAFGFLENIQLWDVSTSVQGVES--IQPITLGS--------VLIAILVFI 844


>gi|227431158|ref|ZP_03913213.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227353053|gb|EEJ43224.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 84

 Score = 39.6 bits (91), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 27/76 (35%)

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGL 328
             I G+      + +  A+        L P L+     +P L     L+      G+ GL
Sbjct: 1   AFIIGDWDTVIIIVVAVALIHLFESYFLPPHLMSQKTHMPILIILLNLIIMEHFFGVWGL 60

Query: 329 FIGPVLMALIAVIWKE 344
            IG  ++  +   ++ 
Sbjct: 61  IIGLPILTFLLDFFQI 76


>gi|167572528|ref|ZP_02365402.1| hypothetical protein BoklC_22011 [Burkholderia oklahomensis C6786]
          Length = 124

 Score = 39.6 bits (91), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISK--KEESSTFLAVIATVSVMCLFIVPLLFLF 82
           + ++ F   +  A ++    WP      +       +T +A   T +V  L +VP+    
Sbjct: 35  WVIRDFIPAIAWACVVAIALWPALRRIDAHPGFHGRATLVAAALTTAVALLVVVPIAAGL 94

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
              + +  EL+  +  A Q GIP P  L+ 
Sbjct: 95  VEAVDQSHELLGWLHRAEQTGIPAPDALAH 124


>gi|146415350|ref|XP_001483645.1| hypothetical protein PGUG_04374 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 483

 Score = 39.6 bits (91), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/109 (9%), Positives = 28/109 (25%), Gaps = 34/109 (31%)

Query: 7   NPQGIMRWMIMFIILVSLYF---------LKGF-FAPVLSAL----IIGFTSWPIYSS-- 50
             + I+ + ++ I     +          L+     P L       ++ +   PI     
Sbjct: 370 ITRVILGFFMLLIGFWVGFIFIFLNYRKSLRPVVLVPFLIGFYCLVLLVYLIDPILVWFG 429

Query: 51  ------------------FISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
                             FI +     +   +   + +  +F +    +
Sbjct: 430 LSESFSSKQSYFIRIRENFIRRLLVKRSAWVMFLVLLLTAIFTIIFSLV 478


>gi|195117218|ref|XP_002003146.1| GI23919 [Drosophila mojavensis]
 gi|193913721|gb|EDW12588.1| GI23919 [Drosophila mojavensis]
          Length = 1179

 Score = 39.6 bits (91), Expect = 0.75,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 27/302 (8%)

Query: 35  LSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
             +  I   + P   S   K+            +S++   ++PL  LF     E  ++V 
Sbjct: 485 ALSWSISMLAIPFVVSLCRKRSIR--------LLSIVGGLVMPLGILFTSFATEFGQVVF 536

Query: 95  KVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFAS 154
              +    G+ + R  S +  G +             S + +          + + +   
Sbjct: 537 SYGIVFGIGVSMVREASTVMLGNYFKRRRQFVEMVAMSGEGVGIALFSVILKEGVGKAGW 596

Query: 155 RFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG--EHLFPAYWKKISRIVPKVIR 212
           R G+  +    ++ F +  ++          + +  L            K+++ V    +
Sbjct: 597 RLGLQIVAALTALSFFMGLMYRPASLYHPQRRAIQHLKNQRKKLREKKPKLTQEVESPTK 656

Query: 213 STF--LGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLL 270
             F  +     A  + L++ S+    G+ + + L  + A                 + LL
Sbjct: 657 YLFLDISSLKSATVKILLMTSSVAAFGIYTPMFLMALNAAKE--------GSDVQELVLL 708

Query: 271 IKG-NIFNATCLFLWGAIE--LFIVDKT-LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                I  A  + L GA+    F++ +  +   +V   + +        ++     MG  
Sbjct: 709 QTFLGISMALGVVLAGALLRRCFVIRQFVINTKIVA-QLFIS--IVALAILFLSFVMGYK 765

Query: 327 GL 328
           GL
Sbjct: 766 GL 767


>gi|300811691|ref|ZP_07092166.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|300497318|gb|EFK32365.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
          Length = 523

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 76/266 (28%), Gaps = 15/266 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A+ I +      +            L  +   +V+ + +   L L Y  M     ++  V
Sbjct: 25  AVFIAYVFQEFINF----AGNPKGSLLQLTIKAVVGIVLFAFLALIYQIMQ--ANIIKDV 78

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
            L  +         SD     +     T  L   +S ++ +E  +  NG+ FI  FA+  
Sbjct: 79  NLKIKEQATKYLLYSDNSDPKFDLSFMTNDLKQVESHRVEAELDIIFNGLQFIAAFAAAM 138

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
              +    + ++  +         G  I           +     K +  +   I  +  
Sbjct: 139 LSSWALSLIFLVASLAPGLLQNIFGPKI-----EAASSAWEGENSKYTEAMTDTINFSAF 193

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALG--VITAIMAMIPGGAPISFTAVSIYLLIKGN 274
                   + +     ++   + + +A           +I   A +    +  + L    
Sbjct: 194 ARL-YDAEDSIYSRMLHYSQRMETALAKMKKAEMVTTEVITSFAYVCSMIIP-FSLGIYF 251

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFL 300
           +           +   + +  + P +
Sbjct: 252 VTQGQITLGTFMMISQLANNFINPIV 277


>gi|184201285|ref|YP_001855492.1| hypothetical protein KRH_16390 [Kocuria rhizophila DC2201]
 gi|183581515|dbj|BAG29986.1| hypothetical protein [Kocuria rhizophila DC2201]
          Length = 69

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 301 VGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
           +G  + L  +     L  G    G+ G  +   L A++   +K  
Sbjct: 1   MGTALSLHGVVIIAALAIGAHEGGVAGALLAVPLTAVLWASFKTF 45


>gi|300113737|ref|YP_003760312.1| hypothetical protein Nwat_1050 [Nitrosococcus watsonii C-113]
 gi|299539674|gb|ADJ27991.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
          Length = 106

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 278 ATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
                L   I  F     + P++ G  + L  +     ++ G    GL GL +   + A 
Sbjct: 27  VIWPSLVYGIVQFFDGWLVTPWIQGRSLNLGAITVVIIVLIGGTVGGLYGLLLCIPMAAC 86

Query: 338 IAVIWKESIMAI 349
             +++ E I+  
Sbjct: 87  AKILFTELILPR 98


>gi|260459634|ref|ZP_05807888.1| MscS Mechanosensitive ion channel [Mesorhizobium opportunistum
           WSM2075]
 gi|259034436|gb|EEW35693.1| MscS Mechanosensitive ion channel [Mesorhizobium opportunistum
           WSM2075]
          Length = 829

 Score = 39.6 bits (91), Expect = 0.80,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 80/282 (28%), Gaps = 15/282 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFT--SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +SL   + F A ++  +I+       P  +   S +   +    +   + +  +    L 
Sbjct: 358 LSLTIARSFVATIVVGIILILMAMLRPFKARDGSWRPWPAWLRYLSLGLGLFTIIAALLG 417

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           ++     + ++ +V+   L   +               + S           +  +    
Sbjct: 418 YIGLALFVSLQVVVTGTALITAYI-------------GFLSAQAIGEEGAFANTFVGRWL 464

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              ++  D           I ++  + ++F+ + L  +      I      L   +    
Sbjct: 465 SANSSYDDTALDQLGLVVSIAINLLIVLVFLPLILLMWGFQPGDIQAWAYKLATGINIGS 524

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                  +   I    +G  +    +G + GS      V + V   +  A+       A 
Sbjct: 525 VTISVTGILSGIVVFVIGYFLTRWFQGWLDGSVMARGKVDTGVRNSIRLAVGYAGVALAA 584

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   + +   L    +         G     +V   +   ++
Sbjct: 585 LVGISAAGIDLSSLALVAGALSLGIGFGLQNVVSNFVSGLIL 626


>gi|111021149|ref|YP_704121.1| bifunctional ABC lipid A exporter [Rhodococcus jostii RHA1]
 gi|110820679|gb|ABG95963.1| bifunctional ABC lipid A exporter [Rhodococcus jostii RHA1]
          Length = 659

 Score = 39.6 bits (91), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 59/218 (27%), Gaps = 12/218 (5%)

Query: 44  SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV------SKVV 97
            WP     + +          +  V ++    V L  +    + +   L+      +++ 
Sbjct: 34  LWPSTKRLLRRLGPHR---IAVGIVILVAAVSVVLTSIAPRMLGQGTNLIFDGIIGAQLP 90

Query: 98  LANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFG 157
                   V    +D              +             L      ++      + 
Sbjct: 91  AGMSKDQAVAALRADGQNTFADMVSGMAVVPGVGIDFSALGRVLAIVLALYLGSAVFMWL 150

Query: 158 MIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLG 217
             FL   +    +        R    +   L     H       +++  +  V +S    
Sbjct: 151 SGFLLNIIVQGVVKNLRAEVERKIHRLP--LRYFDSHSRGDLLSRVTNDIDNVSQSLQQT 208

Query: 218 MTIIAIGEGLVLGSAYWLAGV-PSHVALGVITAIMAMI 254
           M+ + +    V+G    +  + P    + V+T  ++++
Sbjct: 209 MSQLIVSAMTVIGILVMMIVISPLLALIAVLTVPLSIL 246


>gi|282909274|ref|ZP_06317090.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283958715|ref|ZP_06376161.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282326842|gb|EFB57139.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|283789755|gb|EFC28577.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 1509

 Score = 39.6 bits (91), Expect = 0.86,   Method: Composition-based stats.
 Identities = 36/339 (10%), Positives = 96/339 (28%), Gaps = 43/339 (12%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S        S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIAKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAIESVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   + S   +    I  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFVDSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           +  I+ +I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 LNIILGLIKFFSSLFVG-------DWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                       G    GL+ +    ++      +    
Sbjct: 751 -------VVRYFGGLLKGLITIIWVAIIGVFKKSLSAIW 782


>gi|9758216|dbj|BAB08661.1| unnamed protein product [Arabidopsis thaliana]
          Length = 678

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 75/249 (30%), Gaps = 37/249 (14%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
               +  I          F ++    +IF+ +       +   +++Q+ ++      A  
Sbjct: 434 GAKFVFSIGNLIISGAAEFFNFISQLMIFIWVLYILITSESGGVTEQVMNMLPINASARN 493

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +   ++   I    L    IA  +G +    + L  +       V+  I A++P     
Sbjct: 494 -RCVEVLDLAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYW 552

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T  +   L+    +    + +  ++   ++ +     +           T   ++GGV
Sbjct: 553 FATIPAALQLVLEGRY---IVAVILSVTHLVLMEYGASEIQDDIPGSNAYLTGLSIIGGV 609

Query: 321 RTM-----------------------------GLL---GLFIGPVLMALIAVIWKESIMA 348
                                           G+L   G  +GP++  ++  +       
Sbjct: 610 TLFPSALEVRKLKDWVFMKFGTKIGDFVMFFSGILLLQGAIMGPLITTVVIALKDLYAEF 669

Query: 349 IKENKEKIS 357
           +    +KI+
Sbjct: 670 VLNEPKKIN 678


>gi|32491341|ref|NP_871595.1| hypothetical protein WGLp592 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166548|dbj|BAC24738.1| Wg001 [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 345

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 80/262 (30%), Gaps = 9/262 (3%)

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +    +  ++ +   +   +            +++     + S       +    +    
Sbjct: 83  MTLTIFSLVIIITSDLQYAIDIFTENTDFFSIINNKVPNNFFSFFSDHSKNLKDYIITFI 142

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFP 197
           +  L     +    F      IF+ + +  +  I       R    I+  +  L      
Sbjct: 143 KDNLI-VIKNAGKHFLHGLVTIFISFIIGSLIAINKPIKIKRKTDLINHIIVRL-----K 196

Query: 198 AYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGG 257
            +   +S I    I+ + L   + ++   +++   ++   +P    L + T I  M+P  
Sbjct: 197 YFSSALSDIFFSQIKISSLNTLLTSLI--ILVIFPFFGINLPLGKTLIIATFIFGMLPII 254

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLV 317
                  + I   +  ++  +  + L+      +    L   ++G  I          ++
Sbjct: 255 GNFISNCMLITSALSISLKISGIMLLYLVFIHKLE-YFLNAKIIGNRINAKSWELLLSML 313

Query: 318 GGVRTMGLLGLFIGPVLMALIA 339
                 G+ GL   P+  A + 
Sbjct: 314 IFESLFGIEGLIAAPIFYAYLK 335


>gi|325266228|ref|ZP_08132908.1| hypothetical protein HMPREF9098_0635 [Kingella denitrificans ATCC
           33394]
 gi|324982309|gb|EGC17941.1| hypothetical protein HMPREF9098_0635 [Kingella denitrificans ATCC
           33394]
          Length = 369

 Score = 39.2 bits (90), Expect = 0.96,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 70/256 (27%), Gaps = 11/256 (4%)

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            +     + L+ L    M      + +          +   + D              L 
Sbjct: 91  LLSATLTIGLVLLAIVLMAFGVYHLIQGGHIAVMMGKLAAIIEDTKNSADLPASVANMLP 150

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
           +  +    +   L     D + R +     +F+   + +I   +  F             
Sbjct: 151 NNLAEIKTAAARLLKEYGDTLTRISKNSLTVFVYIIIGVIVGALLSFHRLNARMK----- 205

Query: 189 DSLGEHLFPAYWKKISRI---VPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVA 243
                       ++I        +V  +      I      + L       GV  P  + 
Sbjct: 206 RRRMPPFKAELVRRIVNFQSSFERVFIAQVKISLIDTAFTAVYLYLILPAFGVELPFRLT 265

Query: 244 LGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG 303
           + VI  ++ ++P    +    V I L +  +++ A    ++  +   +    L   ++G 
Sbjct: 266 VLVIAFVVGLVPVAGNLVSNTVIIILSLGASLYVAAASLMFLVVVHKLE-YFLNAKIIGS 324

Query: 304 PIKLPFLPTFFGLVGG 319
            I+         +V  
Sbjct: 325 EIESSAWELLLVMVVF 340


>gi|73662833|ref|YP_301614.1| hypothetical protein SSP1524 [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495348|dbj|BAE18669.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 859

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/293 (10%), Positives = 77/293 (26%), Gaps = 23/293 (7%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
             +   + I        ++  +YF    + P  S + I     P+    I +  +S    
Sbjct: 133 RYIALNKKIAVLAAFIFVISPIYFRFTVYWPFFSDVFIWL---PLLLWSIERFLKSGKIG 189

Query: 63  AVIATVSVMCL----------FIVPLLFLFYYGMLEMKELVSKVVLANQHGIP-VPRWLS 111
             I  V++  +              +            +++ +        I  V     
Sbjct: 190 FFIIIVAITLINNFYFAYYQLLTGLIYLTIRLVFRHQADIIPRFKSFMSLFIASVIGLGC 249

Query: 112 DIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMI 171
            +P    A + +  +   P    +        N   F   +      I     LS     
Sbjct: 250 SLPFFFPAIQSFFNNRRTPFDGNVDLFEPFNQNTNVFYDNYLIVILFITGQALLSFKL-- 307

Query: 172 IALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
               + +      +     L    F  +  +I        +     +   +     +   
Sbjct: 308 ----YKHYYFKLFAISTLILICASFVPFIDQIFNGFSAPQKRWHYLIAFNSAVLIGLYVK 363

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPIS-FTAVSIYLLIKGNIFNATCLFL 283
            +    +P+++   VI+  +++I   A         ++     ++     L +
Sbjct: 364 YFRTISIPNYIFSSVIS--LSIIGLSAWYYDDVVAWVWFAPIVSLIGFLILLI 414


>gi|256273916|gb|EEU08835.1| Phm7p [Saccharomyces cerevisiae JAY291]
          Length = 991

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 28/329 (8%), Positives = 77/329 (23%), Gaps = 40/329 (12%)

Query: 30  FFAPVLSAL---IIGFTSWPIYSSFISKKEESSTFLAVIATV--SVMCLFIVPLLFLFYY 84
               +  A    ++G  S    +    K         +   +   +  L     L +   
Sbjct: 392 VLLIIFWAFPVAVVGIISN--VNFLTDKVPFLRFINNMPTFLMGVITGLLPTIALVVLMS 449

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     ++ K+              +                +   S  + S      +
Sbjct: 450 LVPPFIVMLGKLSGCVTRQETDLYSQAWYYAFAVIQIFLVVTATSSASSTVGSIIDRPRS 509

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +     +    ++ Y +                  +S+ L  + +      W + +
Sbjct: 510 AMTLLANNLPKASNFYIMYFILKGLTGPTWTILQAVNLLLSKVLGRVLDSTPRQKWNRYN 569

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +    +   + G+ I+          A      P  +    +   +  +     +++  
Sbjct: 570 TLATPRMGIVYPGIEILVCIYICYSIIA------PILLFFSTVILTLLYVAYLYNLNYVF 623

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              + L   N   A      G     I                       GL    +T G
Sbjct: 624 GFSFDLKGRNYPRALFQIFVGIYLSEIC--------------------LLGLFIMAKTWG 663

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
                  P+++ +  ++         + K
Sbjct: 664 -------PLVLEVFWIVVTALAHIYMKRK 685


>gi|170113292|ref|XP_001887846.1| oligopeptide transporter [Laccaria bicolor S238N-H82]
 gi|164637207|gb|EDR01494.1| oligopeptide transporter [Laccaria bicolor S238N-H82]
          Length = 676

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 76/269 (28%), Gaps = 6/269 (2%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEE---S 58
           +ET++  + +  + ++F+ +    +   + AP L+ + I   +    + F         +
Sbjct: 153 KETVMQKKRLKFFWLIFVAIFVWEWFPEYIAPTLTGISIFCLANQRSAWFTRVFGGAAGN 212

Query: 59  STFLAVIATV--SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGI-PVPRWLSDIPG 115
               A    +  + +     P+  LF     ++       V                   
Sbjct: 213 EGLGAFSICLDWAYVGSGGGPIGALFTPLSTQLSLYAGSAVCMIAFCACYAMNTWKAQNF 272

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
              +  L+ ++ +    L IL+  F    G   I           L      +++  A+ 
Sbjct: 273 PFLSQLLYFENGTEYDQLSILNPDFTLNEGKLAIQGLPWYAASQLLFKVSRTMYIGAAVM 332

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F+   +     +     +            V K + + +     +      +       
Sbjct: 333 HFFLWNYKTILNIVLDFRNGKCNDPHYQKMKVYKDVSNWWYLAIFVGTTAMAMATIYTSG 392

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTA 264
           +G+P       +      IP    +  T 
Sbjct: 393 SGLPWWGLFVALVFAWIFIPIIGHLYATV 421


>gi|195998740|ref|XP_002109238.1| hypothetical protein TRIADDRAFT_21455 [Trichoplax adhaerens]
 gi|190587362|gb|EDV27404.1| hypothetical protein TRIADDRAFT_21455 [Trichoplax adhaerens]
          Length = 547

 Score = 39.2 bits (90), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGF--FAPVLSALIIGFTSWPIYSSFISKKEES 58
           ++  +     +   +++  I   L ++  F  F   +  L + F   P  S         
Sbjct: 432 LKRPVRAIGKLAVIVLVLFIFGLLPYVDNFSHFGGFIFGLFLAFAILPYVSF-GKWDRRR 490

Query: 59  STFLAVIATVSVMCLFIVPLLFL 81
                +I+   V  LF   L   
Sbjct: 491 KRLQIIISIFIVGGLFCAILFIF 513


>gi|319762110|ref|YP_004126047.1| hypothetical protein Alide_1398 [Alicycliphilus denitrificans BC]
 gi|330826059|ref|YP_004389362.1| hypothetical protein Alide2_3518 [Alicycliphilus denitrificans
           K601]
 gi|317116671|gb|ADU99159.1| hypothetical protein Alide_1398 [Alicycliphilus denitrificans BC]
 gi|329311431|gb|AEB85846.1| protein of unknown function UPF0118 [Alicycliphilus denitrificans
           K601]
          Length = 361

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 33/298 (11%), Positives = 80/298 (26%), Gaps = 5/298 (1%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQ 101
             +  +    + +           +         + +L       L +    + +V A Q
Sbjct: 60  LLTRWLAPRLV-RLRRLGPRGRGFSHSGQSMAAALVMLSPLLLLALALSHSRTYIVDAPQ 118

Query: 102 HGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFL 161
               +  +L+     +            P     +    +  + +       +  G  +L
Sbjct: 119 QYRELLDYLARTVLELRLKLPPDIAAQLPAGTAEIQH--VIASYLAAKAGALAMAGRAWL 176

Query: 162 DYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTII 221
              L     ++        G    +   +    L  A   +  R +           T++
Sbjct: 177 TGLLYAYVGLLIGALAAVRGTGTRRGPLTQQLVLRVARMGEAFRQIVAAQFWIAAFNTLL 236

Query: 222 AIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
                L++    W  G+P   AL  +T +  ++P    +   AV   + +  +   A   
Sbjct: 237 TA-LFLLVVLPLWDLGLPYTPALITLTFLAGLVPIVGNLLCNAVITLVGLSVSPIAAVAC 295

Query: 282 FLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
             +  +        +   +VG    +        +       G  GL   P+  A + 
Sbjct: 296 LAFLILIHKAE-YVINAKVVGKRTHMGVWELLSVMFVTEAVFGPAGLVAAPLFYAYLK 352


>gi|151945550|gb|EDN63791.1| phosphate metabolism-related protein [Saccharomyces cerevisiae
           YJM789]
 gi|190407265|gb|EDV10532.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
 gi|207341412|gb|EDZ69475.1| YOL084Wp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|259149404|emb|CAY86208.1| Phm7p [Saccharomyces cerevisiae EC1118]
          Length = 991

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/329 (8%), Positives = 77/329 (23%), Gaps = 40/329 (12%)

Query: 30  FFAPVLSAL---IIGFTSWPIYSSFISKKEESSTFLAVIATV--SVMCLFIVPLLFLFYY 84
               +  A    ++G  S    +    K         +   +   +  L     L +   
Sbjct: 392 VLLIIFWAFPVAVVGIISN--VNFLTDKVPFLRFINNMPTFLMGVITGLLPTIALVVLMS 449

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     ++ K+              +                +   S  + S      +
Sbjct: 450 LVPPFIVMLGKLSGCITRQETDLYCQAWYYAFTVIQIFLVVTATSSASSTVDSIIDRPRS 509

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +     +    ++ Y L                  +S+ L  + +      W + +
Sbjct: 510 AMTLLANNLPKASNFYIMYFLLKGLTGPTWTILQAVNLLLSKVLGRVLDSTPRQKWNRYN 569

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +    +   + G+ I+          A      P  +    +   +  +     +++  
Sbjct: 570 TLATPRMGIVYPGIEILVCIYICYSIIA------PILLFFSTVMLTLLYVAYLYNLNYVF 623

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              + L   N   A      G     +                       GL    +T G
Sbjct: 624 GFSFDLKGRNYPRALFQIFVGIYLSEVC--------------------LLGLFIMAKTWG 663

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
                  P+++ +  ++         + K
Sbjct: 664 -------PLVLEVFWIVVTALAHIYMKRK 685


>gi|325845850|ref|ZP_08169048.1| hypothetical protein HMPREF9246_1558 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481756|gb|EGC84788.1| hypothetical protein HMPREF9246_1558 [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 170

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 1/148 (0%)

Query: 197 PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPG 256
             + KK  +     ++     + I +I   +VL     +  +   + + ++ A + ++P 
Sbjct: 3   KEFLKKYLKEAGLGLKDLLRALIISSIINFVVLAIGLGILKIKYFILIALLIAFVDLLPV 62

Query: 257 GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLP-TFFG 315
                       + I                  FI+ + + P ++G  I L         
Sbjct: 63  LGAGMVMIPWAIIEIFVGNMKLGFSLGILFALTFIIKQIIEPIILGRSIGLNPFLTILIS 122

Query: 316 LVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +   +     LG  +GP++  +I    +
Sbjct: 123 VSFMIFLSPGLGALVGPIVSMMIGTFLE 150


>gi|13471329|ref|NP_102898.1| hypothetical protein mll1272 [Mesorhizobium loti MAFF303099]
 gi|14022074|dbj|BAB48684.1| mll1272 [Mesorhizobium loti MAFF303099]
          Length = 850

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 28/282 (9%), Positives = 80/282 (28%), Gaps = 15/282 (5%)

Query: 22  VSLYFLKGFFAPVLSALIIGFT--SWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
           +SL   + F A ++  +I+       P  +   S +   +    +   + +  +    L 
Sbjct: 379 LSLTIARSFVATIVVGIILILMAMLRPFKARDGSWRPWPAWLRYLALALGLFTIAAALLG 438

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           ++     + ++ +V+   L   +               + S           +  +    
Sbjct: 439 YIGLALFVSLQVVVTGTALITAYI-------------GFLSAQAIGEEGAFANTTVGRWL 485

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
              ++  D           + ++  + ++F+ + L  +      I      L   +    
Sbjct: 486 SANSSYEDAALDQLGLVVSVAINLMIVLVFLPLILLMWGFQPGDIQAWAYKLATGITIGS 545

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
                  +   I    +G  +    +G + GS      V + V   +  A+       A 
Sbjct: 546 VTISVTGILSGIIVFIIGYFLTRWFQGWLDGSVMARGKVDTGVRNSIRLAVGYAGVAVAG 605

Query: 260 ISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
           +   + +   L    +         G     +V   +   ++
Sbjct: 606 LVGISAAGIDLSSLALVAGALSLGIGFGLQNVVSNFVSGLIL 647


>gi|323307068|gb|EGA60351.1| Phm7p [Saccharomyces cerevisiae FostersO]
          Length = 991

 Score = 39.2 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 27/329 (8%), Positives = 77/329 (23%), Gaps = 40/329 (12%)

Query: 30  FFAPVLSAL---IIGFTSWPIYSSFISKKEESSTFLAVIATV--SVMCLFIVPLLFLFYY 84
               +  A    ++G  S    +    K         +   +   +  L     L +   
Sbjct: 392 VLLIIFWAFPVAVVGIISN--VNFLTDKVPFLRFINNMPTFLMGVITGLLPTIALVVLMS 449

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     ++ K+              +                +   S  + S      +
Sbjct: 450 LVPPFIVMLGKLSGCITRQETDLYCQAWYYXFTVIQIFLVVTATSSASSTVDSIIDRPRS 509

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +     +    ++ Y +                  +S+ L  + +      W + +
Sbjct: 510 AMTLLANNLPKASNFYIMYFILKGLTGPTWTILQAVNLLLSKVLGRVLDSTPRQKWNRYN 569

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +    +   + G+ I+          A      P  +    +   +  +     +++  
Sbjct: 570 TLATPRMGIVYPGIEILVCIYICYSIIA------PILLFFSTVMLTLLYVAYLYNLNYVF 623

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              + L   N   A      G     +                       GL    +T G
Sbjct: 624 GFSFDLKGRNYPRALFQIFVGIYLSEVC--------------------LLGLFIMAKTWG 663

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
                  P+++ +  ++         + K
Sbjct: 664 -------PLVLEVFWIVVTALAHIYMKRK 685


>gi|292654200|ref|YP_003534097.1| hypothetical protein HVO_0023 [Haloferax volcanii DS2]
 gi|291371158|gb|ADE03385.1| conserved hypothetical protein [Haloferax volcanii DS2]
          Length = 296

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 27/228 (11%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESS--TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKE 91
           V  A+ + +   P+     +        +  A +     + + + PL+ + +  + ++ E
Sbjct: 31  VFFAITVAYLLVPLRRRLEACGASRWVASLAATVVAAVGVGVVLAPLVVILFLRLSDILE 90

Query: 92  LVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
           L + +                              +     ++ ++   +   G+  +  
Sbjct: 91  LAALLPDVVT-------------------------IEFLGMVETVTLDDVVAVGLGLLRS 125

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                        + +      +F     G ++ + L +L    +      ++    + +
Sbjct: 126 VGRTAATAAPVVLIKLTLFGFLVFALLLSGDAVGRTLPALVPADYRGAATALNERARETL 185

Query: 212 RSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
            + ++     A+G   +    +W  G    V L  + A++  IP   P
Sbjct: 186 FAIYVLQAATAVGTFAIGLVVFWALGYDYVVTLATVAAVLQFIPIVGP 233


>gi|145631088|ref|ZP_01786863.1| hypothetical protein CGSHi22421_05500 [Haemophilus influenzae
           R3021]
 gi|144983373|gb|EDJ90855.1| hypothetical protein CGSHi22421_05500 [Haemophilus influenzae
           R3021]
          Length = 52

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 16/51 (31%)

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMA 348
           P+L    + L  L     ++      G  G+F    L  L+  +       
Sbjct: 2   PYLFSEAVNLHPLIIIISVLIFGGLWGFWGVFFAIPLATLVKAVINALPQD 52


>gi|258614828|ref|ZP_05712598.1| hypothetical protein EfaeD_03867 [Enterococcus faecium DO]
          Length = 61

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           P L+    +LP   TF  L+   R  G+ GL +G  +      + K
Sbjct: 1   PKLMSSKTELPIFYTFVVLLVSERFFGVWGLIVGIPIFTFFLDVLK 46


>gi|302672821|ref|XP_003026098.1| hypothetical protein SCHCODRAFT_71464 [Schizophyllum commune H4-8]
 gi|300099778|gb|EFI91195.1| hypothetical protein SCHCODRAFT_71464 [Schizophyllum commune H4-8]
          Length = 801

 Score = 38.8 bits (89), Expect = 1.2,   Method: Composition-based stats.
 Identities = 39/347 (11%), Positives = 90/347 (25%), Gaps = 17/347 (4%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTF 61
           ++  L  + +  +      +    +   + AP L+ + I   +      F      ++  
Sbjct: 267 QKFFLQKKRVRFFWGTLAAIFVWEWFPEYIAPTLTGVSIFCLANQDSPWFSRIFGGATGN 326

Query: 62  LAVIATVSVM-----CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG 116
             +                  +  LF     +M       V          + +      
Sbjct: 327 EGLGMFSLCFDWNYVGAGGGAIGSLFTPLSTQMSMYAGTAVCIIAFCAVYAQNVWKSQNF 386

Query: 117 MWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDY-CLSIIFMIIALF 175
            + S+L         +  ++       N      +    +    + +     +++  A+ 
Sbjct: 387 PFLSQLLFYENGTEYNQLLILNDDFTLNSTKLAEQGLPYYAGSQVLFKVSRTMYIGAAIM 446

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWL 235
            F         +L    +             V K     +     +A     +  S    
Sbjct: 447 HFVVWHSKDVWKLLKHTKSEEIDDPHYQKMQVYKECPLWWYAALFVASFAMAIATSYTAH 506

Query: 236 AGVPSHVALGVITAIMAMIPGGAPISFTA-----------VSIYLLIKGNIFNATCLFLW 284
           +G+P    +  +     ++P    +  T            +    ++ G         L+
Sbjct: 507 SGLPWWALIVSLLVAAFLLPIIGTLYCTVGYAPSIEILIEMIGAAMVPGKPVANMYATLY 566

Query: 285 GAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIG 331
           G   +      LR   +G   KLP   TF   V G    G+L   + 
Sbjct: 567 GYNSVTQATSLLRDLKMGQYTKLPPRVTFACQVLGSIIGGVLNFVVA 613


>gi|239635856|ref|ZP_04676880.1| conserved hypothetical protein [Staphylococcus warneri L37603]
 gi|239598634|gb|EEQ81107.1| conserved hypothetical protein [Staphylococcus warneri L37603]
          Length = 308

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/80 (12%), Positives = 31/80 (38%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +  +++ ++L  L   K     +L A ++ +   P Y          + F ++   +   
Sbjct: 214 VLALLIGLVLAILSIFKLALIIMLLAFVLLYIISPTYMLVKYSGIYPTKFASIYGIIIYQ 273

Query: 72  CLFIVPLLFLFYYGMLEMKE 91
            + +V +  L +  + ++  
Sbjct: 274 FVLMVIVYLLGHMIIQQLIN 293


>gi|326939662|gb|AEA15558.1| hypothetical protein CT43_CH1874 [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 77

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 276 FNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLM 335
                + ++  +   +    L P  +     LP   TF  L+     +G+ GL IG  + 
Sbjct: 1   MYVVYILVFITVIHALESYFLNPKFMSAKTNLPIFYTFMILIFSEHFLGIWGLIIGIPIF 60

Query: 336 ALIAVIWKE 344
             +  +   
Sbjct: 61  IFLLDVLDI 69


>gi|253729738|ref|ZP_04863903.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253726526|gb|EES95255.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
          Length = 1077

 Score = 38.8 bits (89), Expect = 1.3,   Method: Composition-based stats.
 Identities = 33/325 (10%), Positives = 92/325 (28%), Gaps = 37/325 (11%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + + +A+       P+ +S +      S     +  
Sbjct: 49  RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVT---VLAPLLASIVKAGGLISFLSTKVPI 105

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +  +   +   + +    +  +    +     ++             G + + +    + 
Sbjct: 106 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVN------GAINSVKQTFSNF 159

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
                  I S   +    +  I  FA         +       I+          +I   
Sbjct: 160 IQFIQPFIDSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNF 213

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVI 247
           + ++ E +     K I   + +V+        I    + L++ +   + GV       ++
Sbjct: 214 IKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGVIQGALNIIL 267

Query: 248 TAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKL 307
             I                  ++I                 + ++   ++ + VG  +  
Sbjct: 268 GFIKFFSSLFTGNWRGVWDGIVMILKGT-------------VQLIWNLIQLWFVGKILG- 313

Query: 308 PFLPTFFGLVGGVRTMGLLGLFIGP 332
             +  +FG +      G+ G+  G 
Sbjct: 314 --VVRYFGGLLKGLISGIWGVIKGI 336


>gi|281424105|ref|ZP_06255018.1| putative membrane protein [Prevotella oris F0302]
 gi|299141098|ref|ZP_07034236.1| membrane protein [Prevotella oris C735]
 gi|281401762|gb|EFB32593.1| putative membrane protein [Prevotella oris F0302]
 gi|298578064|gb|EFI49932.1| membrane protein [Prevotella oris C735]
          Length = 1116

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 28/279 (10%), Positives = 68/279 (24%), Gaps = 21/279 (7%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     S V         +    + +      + L  K +    S  
Sbjct: 53  GAPFFMLTANLFSQFVSNPSDVARMVNTMSALLSATTILFLFWTVTHLTRKLILKDWSEL 112

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
             ++  +                  F D             +       +   +    +H
Sbjct: 113 TTAKMIIIEG-----AGLVGALIYAFSDTFWFSAVEGEVYAYSSAFTAIVFWLILKWEDH 167

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  +   ++  +   +     +  +    ++    +       +   +I   ++ +
Sbjct: 168 ADEPHSDRWLVLITYMTGLSIGVHLLNLLCIPAIVLVFCYRKFPNIELKGSLIALFISFV 227

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWG--------AIELFIVDKTLRPFLVG---- 302
              A +      I  +  G  F    + + G           L +V   L          
Sbjct: 228 LVAAVLYGVVPGIITV--GGWFELLFVNVLGCPFNTGEIIYILLLVATVLWAIYESYTDK 285

Query: 303 --GPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
                 + F+ +   L       G   + IG V++ALI 
Sbjct: 286 SEKRTNISFVASVAMLGIPFYGFGWSAVVIGVVILALIW 324


>gi|325126054|gb|ADY85384.1| ABC transporter [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 523

 Score = 38.8 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 82/270 (30%), Gaps = 23/270 (8%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A+ I +      +            L  +   +V+ + +   L L Y  M     ++  V
Sbjct: 25  AVFIAYVFQEFINFV----GNPKGSLLQLTIKAVVGIVLFAFLALIYQIMQ--ANIIKDV 78

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
            L  +         SD     +     T  L   +S ++ +E  +  NG+ FI  FA+  
Sbjct: 79  NLKIKEQATKYLLYSDNSDPKFDLSFMTNDLKQVESHRVEAELDIIFNGLQFIAAFAAAM 138

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
              +    + ++  +         G  I           +     K +  +   I     
Sbjct: 139 LSSWALSLIFLVASLAPGLLQNIFGPKI-----EAASSAWEGENSKYTEAMTDTINFAAF 193

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVA------LGVITAIMAMIPGGAPISFTAVSIYLL 270
                   + +     ++   + + +A      +     I +     + I   ++ IY +
Sbjct: 194 ARL-YDAEDSIYSRMLHYSQRMETALAKMKKAEMVTTEVITSFAYVCSMIIPFSLGIYFV 252

Query: 271 IKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            +G I   T + +       + +  + P +
Sbjct: 253 TQGQITFGTLVMIS-----QLANNFINPIV 277


>gi|258413629|ref|ZP_05681903.1| phage tail tape measure protein [Staphylococcus aureus A9763]
 gi|257839582|gb|EEV64052.1| phage tail tape measure protein [Staphylococcus aureus A9763]
          Length = 1509

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 43/339 (12%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + V +A+       P+ +S        S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTVGNAVT---VLAPLLASIAKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAIESVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    I  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 INIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                       G    GL+ +    ++      +    
Sbjct: 751 -------VVRYFGGLLKGLITIIWVAIIGVFKKSLSAIW 782


>gi|241895035|ref|ZP_04782331.1| integral membrane protein [Weissella paramesenteroides ATCC 33313]
 gi|241871753|gb|EER75504.1| integral membrane protein [Weissella paramesenteroides ATCC 33313]
          Length = 880

 Score = 38.8 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 25/284 (8%), Positives = 77/284 (27%), Gaps = 8/284 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLA 63
            + + +G    + +  +++  Y++       L    I   +W  Y             L 
Sbjct: 181 YLTHEKGWPFVLALTAVIIINYYMAYMIGIFLILYFIWRLTWQPYRLKERLTMLRRFILG 240

Query: 64  VIATVSVMCLFIVPLLFLFY------YGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
            + ++ +     +P  +                +   +                 +P G+
Sbjct: 241 GVISIGLATFVWLPTAYTLMNSKGQHMLANLSWKFDYQPADIIGKLFLGTFNFEQMPTGL 300

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
               + +  +        L     +T     I        M++    L        +++ 
Sbjct: 301 PNIFIGSLPIIILWFFFTLKNIRWQTRLTALIITAILVISMMYAPLNLLWHGFQFPVWYP 360

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           YR  +  S  +  L   ++  Y +        ++  T  G   +      +         
Sbjct: 361 YRFSYLFSFWILWLVASVWSPYLRLSWFQFLTLLILTSGGFIYLFSRMSSLNFLTTAQLY 420

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCL 281
           +     + ++  ++ ++P         V++ ++ +        L
Sbjct: 421 IGGGFFIVLL--LLHVMPAKIKFWLPIVTLLVIGEMTTSTVWTL 462


>gi|312830328|emb|CBX35170.1| phage tail tape measure protein, TP901 family, core region
           [Staphylococcus aureus subsp. aureus ECT-R 2]
          Length = 1509

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 43/339 (12%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + V +A+       P+ +S        S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTVGNAVT---VLAPLLASIAKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAIESVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    I  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 INIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                       G    GL+ +    ++      +    
Sbjct: 751 -------VVRYFGGLLKGLITIIWVAIIGVFKKSLSAIW 782


>gi|285817640|gb|ADC38127.1| Phage tail length tape-measure protein [Staphylococcus aureus
           04-02981]
          Length = 1509

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 43/339 (12%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + V +A+       P+ +S        S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTVGNAVT---VLAPLLASIAKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAIESVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    I  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 INIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                       G    GL+ +    ++      +    
Sbjct: 751 -------VVRYFGGLLKGLITIIWVAIIGVFKKSLSAIW 782


>gi|15927531|ref|NP_375064.1| hypothetical protein SA1766 [Staphylococcus aureus subsp. aureus
           N315]
 gi|30043943|ref|NP_835564.1| hypothetical protein SA1766 [Staphylococcus phage phiN315]
 gi|258447941|ref|ZP_05696075.1| phage tail tape measure protein [Staphylococcus aureus A6224]
 gi|282928134|ref|ZP_06335741.1| phage tail length tape-measure protein [Staphylococcus aureus
           A10102]
 gi|13701750|dbj|BAB43043.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315]
 gi|257858873|gb|EEV81742.1| phage tail tape measure protein [Staphylococcus aureus A6224]
 gi|282590198|gb|EFB95279.1| phage tail length tape-measure protein [Staphylococcus aureus
           A10102]
          Length = 1509

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 43/339 (12%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
              ++   I   I   ++ L  F + V +A+       P+ +S        S     +  
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTVGNAVT---VLAPLLASIAKAGGLISFLSTKVPI 542

Query: 68  VS-VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           +  V      P+  +                 +         + + + G + + +    +
Sbjct: 543 LGTVFTALTGPIGIVLGVLAGLAVAFTIAYKKSET-------FRNFVNGAIESVKQTFSN 595

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
                   I S   +    I  I  FA         +       I+          +I  
Sbjct: 596 FIQFIQPFIDSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICN 649

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            + ++ E +     K I   + +V+        I    + L++ +   + GV      G 
Sbjct: 650 FIKAIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGA 699

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIK 306
           I  I+ +I   + +              +++   + L G +   ++   ++ + VG  + 
Sbjct: 700 INIILGIIKVFSSLFTG-------NWRGVWDGIVMILKGTV--QLIWNLIQLWFVGKILG 750

Query: 307 LPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKES 345
                       G    GL+ +    ++      +    
Sbjct: 751 -------VVRYFGGLLKGLITIIWVAIIGVFKKSLSAIW 782


>gi|251778854|ref|ZP_04821774.1| ABC-type multidrug/protein/lipid transport system, ATPase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083169|gb|EES49059.1| ABC-type multidrug/protein/lipid transport system, ATPase
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 629

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 80/262 (30%), Gaps = 8/262 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I   I+  L  L    +P +           +             F A+   + ++   
Sbjct: 53  LIFVFIMAILSTLFNILSPKVMGEATTTLFNGVTMKLQGIPGAKIDFYALKNILILLTSL 112

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +   F  Y     M  +  K V   +    V   L+ +P   + S      LS   +  
Sbjct: 113 YLFSAFFGYLQQYFMAGVAQKTVQKMRK--DVNEKLARLPLKYFDSNSHGDILSRVTNDI 170

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               + L+ +    I    +  G++ +   +S I  +I L       F+    +    + 
Sbjct: 171 DNISSTLQQSLTQLITAIVTMVGILIMMLSISPIMTLICLITLPACIFATRPIIKRSQKF 230

Query: 195 LFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY----WLAGVPSHVALGVIT 248
                 +  K++  + ++     +        + +   +      + AG  +    G++ 
Sbjct: 231 FLKQQKELGKLNGHIEEMYTGHQIIKAFGHEEKAIDTFNEINDKLYQAGWKAQFVSGLMM 290

Query: 249 AIMAMIPGGAPISFTAVSIYLL 270
            +M  I     +  + V   L+
Sbjct: 291 PLMNFINNIGYVLVSVVGGLLV 312


>gi|215414070|ref|ZP_03422729.1| putative transmembrane protein [Mycobacterium tuberculosis
           94_M4241A]
          Length = 190

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 1/140 (0%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++    M  +L  L   +    PVL AL++     P      S+          +  +
Sbjct: 23  RFLVILAAMVALLWVLNKFEVIVVPVLLALMLSALLVPPVDWLDSR-GLPHAVAVTLVLL 81

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           S   +    L F+    +  +  LV++V  +                G          + 
Sbjct: 82  SGFAVLGGILTFVVSQFIAGLPHLVTEVERSIDSARRWLIEGPAHLRGEQIDNAGNAAIE 141

Query: 129 HPQSLKILSETFLKTNGIDF 148
             ++ +    +   +     
Sbjct: 142 ALRNNQAKLTSGALSTAATI 161


>gi|255018544|ref|ZP_05290670.1| hypothetical protein LmonF_14046 [Listeria monocytogenes FSL
           F2-515]
          Length = 118

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/98 (12%), Positives = 32/98 (32%)

Query: 5   MLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAV 64
            L  + + R  +  +I   LY L+     +L   I  +    + +  + +       + +
Sbjct: 7   FLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSYLITRLENFILRRISIYRQIIVL 66

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQH 102
           +  V +  + I   +        ++ +LV         
Sbjct: 67  LLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFLTT 104


>gi|328776234|ref|XP_395087.4| PREDICTED: rhomboid family member 1 [Apis mellifera]
          Length = 894

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 7/51 (13%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
               +   +  +   P  S           +L  I  + ++ LF + L   
Sbjct: 808 LFGFIFGFLAAYALLPFISF-GQYDRRRKIWLIWICMILIVVLFTLLLALF 857


>gi|257136415|ref|YP_003169689.1| tail length tape measure protein [Staphylococcus phage P954]
 gi|256681257|gb|ACV05000.1| tail length tape measure protein [Staphylococcus phage P954]
          Length = 1509

 Score = 38.4 bits (88), Expect = 1.6,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 85/313 (27%), Gaps = 36/313 (11%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAIESVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    I  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+ +I 
Sbjct: 659 INFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGLIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTF 313
             + +               +      +   +   + ++   ++ + VG  +    +  +
Sbjct: 709 FFSSLFT-----------GDWRGVWDAIVMILKGVVQLIWNLIQLWFVGKILG---VVRY 754

Query: 314 FGLVGGVRTMGLL 326
           FG +      G+ 
Sbjct: 755 FGGLLKGLIAGIW 767


>gi|253734923|ref|ZP_04869088.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|253727105|gb|EES95834.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus TCH130]
          Length = 1509

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 85/313 (27%), Gaps = 36/313 (11%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAIESVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    I  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+ +I 
Sbjct: 659 INFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGLIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTF 313
             + +               +      +   +   + ++   ++ + VG  +    +  +
Sbjct: 709 FFSSLFT-----------GDWRGVWDAIVMILKGVVQLIWNLIQLWFVGKILG---VVRY 754

Query: 314 FGLVGGVRTMGLL 326
           FG +      G+ 
Sbjct: 755 FGGLLKGLIAGIW 767


>gi|258423034|ref|ZP_05685933.1| phage77_ORF001 protein [Staphylococcus aureus A9635]
 gi|282904620|ref|ZP_06312495.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
 gi|257846821|gb|EEV70836.1| phage77_ORF001 protein [Staphylococcus aureus A9635]
 gi|282594869|gb|EFB99845.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           C160]
          Length = 1509

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 85/313 (27%), Gaps = 36/313 (11%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAIESVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    I  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+ +I 
Sbjct: 659 INFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGLIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTF 313
             + +               +      +   +   + ++   ++ + VG  +    +  +
Sbjct: 709 FFSSLFT-----------GDWRGVWDAIVMILKGVVQLIWNLIQLWFVGKILG---VVRY 754

Query: 314 FGLVGGVRTMGLL 326
           FG +      G+ 
Sbjct: 755 FGGLLKGLIAGIW 767


>gi|219685319|ref|ZP_03540138.1| membrane protein [Borrelia garinii Far04]
 gi|219673092|gb|EED30112.1| membrane protein [Borrelia garinii Far04]
          Length = 210

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/141 (8%), Positives = 41/141 (29%), Gaps = 5/141 (3%)

Query: 3   ETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
           +           +I+ I + +    +  F P+  ++++GF  +P+Y+     K       
Sbjct: 12  KPWRVESVFYFIVIVLIFIGAFKIAEAVFKPLAISIVLGFLVYPVYTFLARFKVPR---- 67

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
             +    +  L       +F +    +  L+ ++         + + +        +   
Sbjct: 68  -FLIVFIIFFLLFSFSYLIFSFVYYSVTVLMRQLPYYQNQLAFIMKDVLSRYKVDSSVIN 126

Query: 123 WTKHLSHPQSLKILSETFLKT 143
                 +       +   +  
Sbjct: 127 DINFSGYIYPFLTRASNEIIG 147


>gi|15924945|ref|NP_372479.1| phi PVL ORF 15 and 16-like protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|156980272|ref|YP_001442531.1| phi PVL ORF 15 and 16 homologue [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255006741|ref|ZP_05145342.2| hypothetical protein SauraM_09745 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258450648|ref|ZP_05698709.1| phage 77 protein 001 [Staphylococcus aureus A5948]
 gi|284025001|ref|ZP_06379399.1| hypothetical protein Saura13_10451 [Staphylococcus aureus subsp.
           aureus 132]
 gi|304379146|ref|ZP_07361891.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|14247728|dbj|BAB58117.1| phi PVL ORF 15 and 16 homolog [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|156722407|dbj|BAF78824.1| phi PVL ORF 15 and 16 homologue [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|257861648|gb|EEV84448.1| phage 77 protein 001 [Staphylococcus aureus A5948]
 gi|269941424|emb|CBI49821.1| phage tail length tape measure protein [Staphylococcus aureus
           subsp. aureus TW20]
 gi|304342261|gb|EFM08155.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus ATCC BAA-39]
 gi|329314633|gb|AEB89046.1| Phi PVL hypothetical protein [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 1509

 Score = 38.4 bits (88), Expect = 1.7,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 85/313 (27%), Gaps = 36/313 (11%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAIESVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    I  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+ +I 
Sbjct: 659 INFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGLIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTF 313
             + +               +      +   +   + ++   ++ + VG  +    +  +
Sbjct: 709 FFSSLFT-----------GDWRGVWDAIVMILKGVVQLIWNLIQLWFVGKILG---VVRY 754

Query: 314 FGLVGGVRTMGLL 326
           FG +      G+ 
Sbjct: 755 FGGLLKGLIAGIW 767


>gi|238023032|ref|ZP_04603458.1| hypothetical protein GCWU000324_02954 [Kingella oralis ATCC 51147]
 gi|237865415|gb|EEP66555.1| hypothetical protein GCWU000324_02954 [Kingella oralis ATCC 51147]
          Length = 141

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/116 (10%), Positives = 34/116 (29%), Gaps = 1/116 (0%)

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
              L +        +P    L  +     +IP    +      + + +  ++       +
Sbjct: 17  VLYLFVALPAAGISLPFKTTLTCLVFFAGLIPVIGNLISNTAVVIISLGNSLTAGIVSLI 76

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIA 339
           +  +        L   ++G  +          ++      G+ G+ + PV  A + 
Sbjct: 77  FLVVIHKAE-YFLNAKIIGEQVNAKAFELLLVMIVFEHLFGIGGIVLAPVCYAYLK 131


>gi|188587548|ref|YP_001919745.1| ABC-type multidrug/protein/lipid transport system, ATPase
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188497829|gb|ACD50965.1| ABC-type multidrug/protein/lipid transport system, ATPase
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 629

 Score = 38.4 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 80/262 (30%), Gaps = 8/262 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I   I+  L  L    +P +           +             F A+   + ++   
Sbjct: 53  LIFVFIMAILSTLFNILSPKVMGEATTTLFNGVTMKLQGIPGAKIDFYALKNILILLTSL 112

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
            +   F  Y     M  +  K V   +    V   L+ +P   + S      LS   +  
Sbjct: 113 YLFSAFFGYLQQYFMAGVAQKTVQKMRK--DVNEKLARLPLKYFDSNSHGDILSRVTNDI 170

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
               + L+ +    I    +  G++ +   +S I  +I L       F+    +    + 
Sbjct: 171 DNISSTLQQSLTQLITAIVTMVGILIMMLSISPIMTLICLITLPACIFATRPIIKRSQKF 230

Query: 195 LFPAYWK--KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY----WLAGVPSHVALGVIT 248
                 +  K++  + ++     +        + +   +      + AG  +    G++ 
Sbjct: 231 FLKQQKELGKLNGHIEEMYTGHQIIKAFGHEEKAIDTFNEINDKLYQAGWKAQFVSGLMM 290

Query: 249 AIMAMIPGGAPISFTAVSIYLL 270
            +M  I     +  + V   L+
Sbjct: 291 PLMNFINNIGYVLVSVVGGLLV 312


>gi|325843768|ref|ZP_08168010.1| ABC transporter, ATP-binding protein [Turicibacter sp. HGF1]
 gi|325489264|gb|EGC91642.1| ABC transporter, ATP-binding protein [Turicibacter sp. HGF1]
          Length = 609

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 1/176 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ I+      +    +P + A I      PI       K  +    + I  + ++ + 
Sbjct: 38  LIVVILAAITSVIFSIVSPKVMAKITNELFRPIQELMTGVKNPTPIDFSYIWKIILILIG 97

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  L   F Y    +   +S+  +       + + L+ +P   + S    + LS   +  
Sbjct: 98  LYVLSAAFSYLQQFIMAGISQ-KVVYDLREEIDQKLAKLPLKFFDSHTHGELLSRFTNDV 156

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 L+ +    I    +  G++ +   +S +  +I++      G  + Q +  
Sbjct: 157 DNISATLQQSITQVITSVTTIIGVLIMMLSISPLLTLISIIVVPLSGILMMQVVKK 212


>gi|309790991|ref|ZP_07685531.1| TPR repeat-containing protein [Oscillochloris trichoides DG6]
 gi|308226964|gb|EFO80652.1| TPR repeat-containing protein [Oscillochloris trichoides DG6]
          Length = 277

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/103 (11%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 2   RETMLNPQGIMRWMIMFIILVSLYFLKGFFAPV------LSALIIGFTSWP----IYSSF 51
           R  +    G    +I   + +   FL    A          ++ +     P    +    
Sbjct: 166 RRPVNYQVGASDLLISGAVALGFAFLMSIVAGFGLALIGFFSIFLSIILGPSAGELLVRL 225

Query: 52  ISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVS 94
           + +          I       L  +P++  F+   L +  + +
Sbjct: 226 LERINRKRGRSIQIMVGVCYGLGALPVVIFFFNIALLIFTIAA 268


>gi|6324488|ref|NP_014557.1| Phm7p [Saccharomyces cerevisiae S288c]
 gi|74645037|sp|Q12252|PHM7_YEAST RecName: Full=Phosphate metabolism protein 7
 gi|600474|emb|CAA58195.1| orf 00953 [Saccharomyces cerevisiae]
 gi|1419922|emb|CAA99096.1| unnamed protein product [Saccharomyces cerevisiae]
 gi|285814807|tpg|DAA10700.1| TPA: Phm7p [Saccharomyces cerevisiae S288c]
          Length = 991

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/329 (8%), Positives = 77/329 (23%), Gaps = 40/329 (12%)

Query: 30  FFAPVLSAL---IIGFTSWPIYSSFISKKEESSTFLAVIATV--SVMCLFIVPLLFLFYY 84
               +  A    ++G  S    +    K         +   +   +  L     L +   
Sbjct: 392 VLLIIFWAFPVAVVGIISN--VNFLTDKVPFLRFINNMPTFLMGVITGLLPTIALVVLMS 449

Query: 85  GMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
            +     ++ K+              +                +   S  + S      +
Sbjct: 450 LVPPFIVMLGKLSGCVTRQETDLYSQAWYYAFAVIQIFLVVTATSSASSTVDSIIDRPRS 509

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +  +     +    ++ Y +                  +S+ L  + +      W + +
Sbjct: 510 AMTLLANNLPKASNFYIMYFILKGLTGPTWTILQAVNLLLSKVLGRVLDSTPRQKWNRYN 569

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            +    +   + G+ I+          A      P  +    +   +  +     +++  
Sbjct: 570 TLATPRMGIVYPGIEILVCIYICYSIIA------PILLFFSTVMLTLLYVAYLYNLNYVF 623

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMG 324
              + L   N   A      G     +                       GL    +T G
Sbjct: 624 GFSFDLKGRNYPRALFQIFVGIYLSEVC--------------------LLGLFIMAKTWG 663

Query: 325 LLGLFIGPVLMALIAVIWKESIMAIKENK 353
                  P+++ +  ++         + K
Sbjct: 664 -------PLVLEVFWIVVTALAHIYMKRK 685


>gi|297793069|ref|XP_002864419.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297310254|gb|EFH40678.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 5/246 (2%)

Query: 114 PGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIA 173
                               +       K   +  +      F            F+   
Sbjct: 59  REWSQIYSEVDVIFRELIITREDLVEKAKGFAVKGMDVSQRVFSSSASVVGGGAKFVFSI 118

Query: 174 LFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAY 233
                     I   +  L   ++  Y    S      I    L    IA  +G +    +
Sbjct: 119 GNLIISGVAEIFNFISQLMVFIWILYILITSESGDLAISDVLLATAKIAFFQGCLTWLLF 178

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
            L  +       V+  I A++P       T  +   ++    +    + +  ++   ++ 
Sbjct: 179 RLYTIHFLYMSTVLAFISALLPIFPYWFATIPAALQVVLEGRY---IVAVTLSVTHLVLM 235

Query: 294 KTLRPFLVGGPIKLPFLPTFFGLVGGVRTM--GLLGLFIGPVLMALIAVIWKESIMAIKE 351
           +     +           T   ++GGV      L G  IGP++  ++  +       +  
Sbjct: 236 EYGASEIQDDIPGSNAYITGLSIIGGVTLFPSALEGAIIGPLITTVVIALKDLYAEFVLN 295

Query: 352 NKEKIS 357
           + +KIS
Sbjct: 296 DPKKIS 301


>gi|293374101|ref|ZP_06620436.1| ABC transporter, ATP-binding protein [Turicibacter sanguinis PC909]
 gi|292647267|gb|EFF65242.1| ABC transporter, ATP-binding protein [Turicibacter sanguinis PC909]
          Length = 609

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 62/176 (35%), Gaps = 1/176 (0%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF 74
           +I+ I+      +    +P + A I      PI       K  +    + I  + ++ + 
Sbjct: 38  LIVVILAAITSVIFSIVSPKVMAKITNELFRPIQELMTGVKNPTPIDFSYIWKIILILIG 97

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
           +  L   F Y    +   +S+  +       + + L+ +P   + S    + LS   +  
Sbjct: 98  LYVLSAAFSYLQQFIMAGISQ-KVVYDLREEIDQKLAKLPLKFFDSHTHGELLSRFTNDV 156

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
                 L+ +    I    +  G++ +   +S +  +I++      G  + Q +  
Sbjct: 157 DNISATLQQSITQVITSVTTIIGVLIMMLSISPLLTLISIIVVPLSGILMMQVVKK 212


>gi|221140557|ref|ZP_03565050.1| hypothetical protein SauraJ_02841 [Staphylococcus aureus subsp.
           aureus str. JKD6009]
          Length = 1450

 Score = 38.0 bits (87), Expect = 2.0,   Method: Composition-based stats.
 Identities = 32/313 (10%), Positives = 85/313 (27%), Gaps = 36/313 (11%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSV-MCLFI 75
           + I       +            I        +         +    +I+ +S  + +  
Sbjct: 488 IVIFGGIAAAIGPVV--FGLGAFISTIGN-AVTVLAPLLAGIAKADGLISFLSTKVPILG 544

Query: 76  VPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKI 135
                L     + +  L    V           + + + G + + +    +        I
Sbjct: 545 TVFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAIESVKQTFSNFIQFIQPFI 604

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
            S   +    I  I  FA         +       I+          +I   + ++ E +
Sbjct: 605 DSVKNIFKQAISAIVDFAKDIWSQINGFFNENGISIVQAL------QNICNFIKAIFEFI 658

Query: 196 FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                K I   + +V+        I    + L++ +   + GV      G +  I+ +I 
Sbjct: 659 INFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV----IQGALNIILGLIK 708

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTF 313
             + +               +      +   +   + ++   ++ + VG  +    +  +
Sbjct: 709 FFSSLFT-----------GDWRGVWDAIVMILKGVVQLIWNLIQLWFVGKILG---VVRY 754

Query: 314 FGLVGGVRTMGLL 326
           FG +      G+ 
Sbjct: 755 FGGLLKGLIAGIW 767


>gi|315928096|gb|EFV07415.1| acid membrane antigen A [Campylobacter jejuni subsp. jejuni
           DFVF1099]
          Length = 187

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 52/167 (31%), Gaps = 11/167 (6%)

Query: 34  VLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELV 93
           ++ A ++   +  I + F++  +      +++ T  ++ LF  P ++        +K   
Sbjct: 30  IIIASLMAVATSNINAKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFD 89

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             +V      +             +   L          +K    +    +    I  +A
Sbjct: 90  INLVTQTLDYVK-----------NYQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYA 138

Query: 154 SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
           S F      + + ++ + +  FF    G  +   L S+         
Sbjct: 139 SSFTKSGAKFLIDMVLICVFYFFANLYGTELVIYLKSIIPIDKKNLM 185


>gi|33519502|ref|NP_878334.1| transmembrane protein [Candidatus Blochmannia floridanus]
 gi|33517165|emb|CAD83547.1| probable transmembrane protein [Candidatus Blochmannia floridanus]
          Length = 336

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 3/226 (1%)

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFF 177
                + K L +  S             I  I   +       +   L +I   I  F  
Sbjct: 109 QVPYSFPKFLPNTTSELKDQVFSWIELNIILIKNMSHTILHGCITLILGLILGTIISFPK 168

Query: 178 YRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
           + + +  +    +          +    IV   I+ + +   + +I    +L        
Sbjct: 169 HTNKYIQNTYFITQLLQRIYNLSQAFHNIVFAQIQISSINTLLTSIMIFTILPLLNQS-- 226

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
           +P    L ++T I+ ++P    +    +     +  ++     + L+  +   +    L 
Sbjct: 227 IPLAKTLIILTFILGLLPIIGNLISNIIITISALSVSLSIGLIMLLYLILIHKLE-YFLN 285

Query: 298 PFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
             ++G  I          ++      G+ GL   P+  A + +  +
Sbjct: 286 AEIIGNRINSNTWELILAMIFLESIFGIEGLIAAPIFYAYLKIELR 331


>gi|300024037|ref|YP_003756648.1| ABC transporter [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525858|gb|ADJ24327.1| ABC transporter related protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 625

 Score = 38.0 bits (87), Expect = 2.1,   Method: Composition-based stats.
 Identities = 22/284 (7%), Positives = 62/284 (21%), Gaps = 13/284 (4%)

Query: 22  VSLYFLKGFFAPVLSALIIG----FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVP 77
             +  L  FF  +L A  +G            + + +    S     ++T S M   +  
Sbjct: 34  FFIKPLWPFFVLLLIAGCLGSTIEVALMGFVGAIVDRMRTHSDPATFVSTYSWMLALMAF 93

Query: 78  LLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILS 137
           +  +    +    + +   +++      +                         +  + +
Sbjct: 94  VALILRPLVSTAHDFIKNQMISAGTTSRIRWQTHRYVLRQSLGFFQNDFAGRVANKIMQT 153

Query: 138 ETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH--- 194
            T L+ + +  I               L                 +    L         
Sbjct: 154 GTSLRESVVQLIDALWYASVQFIGSALLFAASDWRLTIPLIIWLAAYIVALRYFVPRIKE 213

Query: 195 ---LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
                      +   +     +                        + +  A   +   M
Sbjct: 214 RSTKSSEARSMLVGRIVDSYTNIMTVKLFAHAEREDTYAREALTEQMQAWQASLRLITGM 273

Query: 252 AMIPG---GAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            ++     G  +  T  +  +L          + +   + + IV
Sbjct: 274 ELVLYTLNGILLVATTGAAIVLWTMGHVTVGDIAVVSGLVIRIV 317


>gi|297788190|ref|XP_002862244.1| hypothetical protein ARALYDRAFT_921013 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297307548|gb|EFH38502.1| hypothetical protein ARALYDRAFT_921013 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 608

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 58/183 (31%), Gaps = 5/183 (2%)

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLS-IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
               +  I          F ++    ++F+ +       +   +++Q+ ++      A  
Sbjct: 419 GAKFVFSIGNLIISGAAEFFNFISQLMVFIWVLYILITSESGGVTEQVMNMLPINASARN 478

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +   ++   I    L    IA  +G +    + L  +       V+  I A++P     
Sbjct: 479 -RCVEVLDLAISGVLLATAEIAFFQGCLTWLLFRLYNIHFLYMSTVLAFISALLPIFPYW 537

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
             T  +   L+    +    + +  ++   ++ +     +           T   ++GGV
Sbjct: 538 FATIPAALQLVLEGRY---IIAVTLSVTHLVLMEYGASEIQDDIPGSNAYITGLSIIGGV 594

Query: 321 RTM 323
              
Sbjct: 595 TLF 597


>gi|257426107|ref|ZP_05602523.1| phage77ORF001 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257431373|ref|ZP_05607747.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257434087|ref|ZP_05610438.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|293507830|ref|ZP_06667672.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|257271015|gb|EEV03184.1| phage77ORF001 [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257277819|gb|EEV08483.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281013|gb|EEV11157.1| phage tail tape measure protein [Staphylococcus aureus subsp.
           aureus E1410]
 gi|291094893|gb|EFE25161.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus 58-424]
          Length = 1509

 Score = 38.0 bits (87), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/286 (6%), Positives = 64/286 (22%), Gaps = 37/286 (12%)

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    +       +  +   +S V  A     P+   ++   G +         L    
Sbjct: 488 IVIFGGIAAAIGPVVFGLGAFISTVGNAVTVLAPLLASIAKADGLISFLSTKVPILGTVF 547

Query: 132 SLKILSETFLKTNGIDFIPRFAS---------RFGMIFLDYC--LSIIFMIIALFFFYRD 180
           +        +          F            F    ++        F+     F    
Sbjct: 548 TALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFIDSV 607

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                Q + ++ +     + +         I        I    + +      ++     
Sbjct: 608 KNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKAIFEFILNFVIK--- 664

Query: 241 HVALGVITAIMAMIPGGAPISF---------------TAVSIYLLI---KGNIFNATCLF 282
            +   +   +  + P    +                   + +           +      
Sbjct: 665 PIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGALNIILGLIKFFSSLFTGDWRGVWDA 724

Query: 283 LWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +   +   + ++   ++ + VG  +    +  +FG +      G+ 
Sbjct: 725 IVMILKGVVQLIWNLIQLWFVGKILG---VVRYFGGLLKGLIAGIW 767


>gi|218677713|ref|ZP_03525610.1| putative transmembrane protein [Rhizobium etli CIAT 894]
          Length = 63

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/62 (12%), Positives = 24/62 (38%)

Query: 296 LRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEK 355
           + P ++G  +++     F  ++      G +G  +   L  ++  +  E ++  K   + 
Sbjct: 2   IFPAVMGRRLEINPFIVFLAILFWTWMWGAVGAMLALPLSLIVMTVIDELLIEEKPQPQL 61

Query: 356 IS 357
             
Sbjct: 62  PK 63


>gi|313899753|ref|ZP_07833256.1| putative PTS system mannose-specific EIIBCA component [Clostridium
           sp. HGF2]
 gi|312955368|gb|EFR37033.1| putative PTS system mannose-specific EIIBCA component [Clostridium
           sp. HGF2]
          Length = 490

 Score = 38.0 bits (87), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 69/250 (27%), Gaps = 1/250 (0%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
            +      GF + +L A I+G+    +      K  +  T + +I  VS + + I+ L  
Sbjct: 224 FLGTQTGGGFLSAILVAFIVGYFVKGMKRIPWPKIVQPLTGIMIIPFVSTLVIMIIVLFL 283

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +       M  L S +   N+     P  +  I G M   +                 T 
Sbjct: 284 IGQPIAFAMDALYSGLTTLNEQYAAAPFIIGAIIGAMVGFDFGGPVNKTALIFGTAVFTD 343

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH-LFPAY 199
             T        F  +           +   + ++ F  +   +      S     +    
Sbjct: 344 TMTKYGVQGANFVPQSATQAAISVAPLGIWLASVIFKNKFSKTEKISATSAFGMGMVGVT 403

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAP 259
              I       ++     +   A+  GLV  +     G         I  I   IP    
Sbjct: 404 EGAIPFAAANPLQMITASVAGSALAGGLVALTGCKFYGGIGSPLGTFIGYIEQPIPFITW 463

Query: 260 ISFTAVSIYL 269
           I      I +
Sbjct: 464 ILCVLAGIVV 473


>gi|327297566|ref|XP_003233477.1| MFS monosaccharide transporter [Trichophyton rubrum CBS 118892]
 gi|326464783|gb|EGD90236.1| MFS monosaccharide transporter [Trichophyton rubrum CBS 118892]
          Length = 713

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 39/318 (12%), Positives = 78/318 (24%), Gaps = 36/318 (11%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-----IVPLLFLFYYGMLEMKELVSK 95
            F S  +            T L       V   F      +P++ +           +S 
Sbjct: 211 AFISSLLVGKIGDIIGRRRTILYGSMVFFVGGAFQTFATGIPMMLVGRIVAGLGVGALST 270

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +V   Q  I  P     +    +   +     S              +  +    +    
Sbjct: 271 IVPVYQSEISPPHNRGQLACIEFTGNICGYAASVWVDYFCSYIQSDFSWRLPLFLQCVMG 330

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAYWKKI--------- 203
             + F    +      +       +G  +   L     L        +++I         
Sbjct: 331 ALLGFGSLIICESPRWLLDHDHDEEGMVVIANLYGKGDLHNDKARQEYREIKTNVLVTRQ 390

Query: 204 ------SRIVPKVIRSTFLGMTIIAIGE--GLVLGSAYWLAGVPSHVALGVITAIMAMIP 255
                 + +  +  R  F+ M+  A  +  G+ + S Y      S   +G    +M  I 
Sbjct: 391 EGERTYTDMFKRYYRRVFIAMSAQAFAQLNGINVISYYAPLVFESAGWVGRDAILMTGIN 450

Query: 256 GGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE-LFIVDKTLRPFLVGGPIKLP--FLPT 312
           G   +  T    YL+ +              I  L  +   +        I +      T
Sbjct: 451 GITYLLSTIPPWYLVDRWGRRPILLSGAILMIISLSAMAYFI-------HINISYTPALT 503

Query: 313 FFGLVGGVRTMGL-LGLF 329
              ++      G   G  
Sbjct: 504 VISVMIYNAAFGFSWGPI 521


>gi|325685878|gb|EGD27944.1| multidrug ABC superfamily ATP binding cassette transporter, ATPase
           and permease protein [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 533

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 76/266 (28%), Gaps = 15/266 (5%)

Query: 37  ALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKV 96
           A+ I +      +            L  +   +V+ + +   L L Y  M     ++  V
Sbjct: 35  AVFIAYVFQEFINF----AGNPKGSLLQLTIKAVVGIVLFACLALIYQIMQ--ANIIKDV 88

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
            L  +         SD     +     T  L   +S ++ +E  +  NG+ FI  FA+  
Sbjct: 89  NLKIKEQATKYLLYSDNSDPKFDLSFMTNDLKQVESHRVEAELDIIFNGLQFIAAFAAAM 148

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
              +    + ++  +         G  I           +     K +  +   I  +  
Sbjct: 149 LSSWALSLIFLVASLAPGLLQNVFGPKI-----EAASSAWEGENSKYTEAMTDTINFSAF 203

Query: 217 GMTIIAIGEGLVLGSAYWLAGVPSHVALG--VITAIMAMIPGGAPISFTAVSIYLLIKGN 274
                   + +     ++   + + +A           +I   A +    +  + L    
Sbjct: 204 ARL-YDAEDSIYSRMLHYSQRMETALAKMKKAEMVTTEVITSFAYVCSMIIP-FSLGIYF 261

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFL 300
           +           +   + +  + P +
Sbjct: 262 VTQGQITLGTFMMISQLANNFINPIV 287


>gi|170767699|ref|ZP_02902152.1| potassium efflux system KefA [Escherichia albertii TW07627]
 gi|170123187|gb|EDS92118.1| potassium efflux system KefA [Escherichia albertii TW07627]
          Length = 1118

 Score = 38.0 bits (87), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMALTATGYFYTTLRLAG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGLMFWAIWSDLITVFTYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAIGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 ALGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|257436994|ref|ZP_05613035.1| phage77ORF001 [Staphylococcus aureus subsp. aureus M876]
 gi|282914807|ref|ZP_06322589.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|282925251|ref|ZP_06332909.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|293510793|ref|ZP_06669494.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus M809]
 gi|293545392|ref|ZP_06672069.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257283588|gb|EEV13714.1| phage77ORF001 [Staphylococcus aureus subsp. aureus M876]
 gi|282313039|gb|EFB43438.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus C101]
 gi|282321302|gb|EFB51631.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M899]
 gi|290919805|gb|EFD96876.1| putative membrane protein [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291466366|gb|EFF08891.1| phage tail length tape-measure protein [Staphylococcus aureus
           subsp. aureus M809]
          Length = 1509

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/286 (6%), Positives = 64/286 (22%), Gaps = 37/286 (12%)

Query: 72  CLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQ 131
            +    +       +  +   +S V  A     P+   ++   G +         L    
Sbjct: 488 IVIFGGIAAAIGPVVFGLGAFISTVGNAVTVLAPLLASIAKADGLISFLSTKVPILGTVF 547

Query: 132 SLKILSETFLKTNGIDFIPRFAS---------RFGMIFLDYC--LSIIFMIIALFFFYRD 180
           +        +          F            F    ++        F+     F    
Sbjct: 548 TALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNGAINSVKQTFSNFIQFIQPFIDSV 607

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
                Q + ++ +     + +         I        I    + +      ++     
Sbjct: 608 KNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQALQNICNFIKAIFEFILNFVIK--- 664

Query: 241 HVALGVITAIMAMIPGGAPISF---------------TAVSIYLLI---KGNIFNATCLF 282
            +   +   +  + P    +                   + +           +      
Sbjct: 665 PIMFAIWQVMQFIWPAVKALIVSTWENIKGVIQGALNIILGLIKFFSSLFTGDWRGVWDA 724

Query: 283 LWGAI--ELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
           +   +   + ++   ++ + VG  +    +  +FG +      G+ 
Sbjct: 725 IVMILKGVVQLIWNLIQLWFVGKILG---VVRYFGGLLKGLIAGIW 767


>gi|302887266|ref|XP_003042521.1| hypothetical protein NECHADRAFT_81009 [Nectria haematococca mpVI
           77-13-4]
 gi|256723433|gb|EEU36808.1| hypothetical protein NECHADRAFT_81009 [Nectria haematococca mpVI
           77-13-4]
          Length = 509

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 84/286 (29%), Gaps = 13/286 (4%)

Query: 58  SSTFLAVIATVSVMCLFIVPLLFLFY--YGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
           S ++   IA      + I+    L       L  ++       +    +      + +  
Sbjct: 173 SRSWRVTIAFQLFFAIVILFGSLLIPESPFYLLQRDRPHDARRSIATLLNADVDSNQVDE 232

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
            M   E     +     +  + E F  TN        A  F  I         +      
Sbjct: 233 AMNEIEGHLADIVSHGDV-KILECFQGTNRTRTFLGMAMSFFTIATGITFWFGYGTTFFM 291

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT--IIAIGEGLVLGSAY 233
               D   +   + ++   LF A    +     +       G+   +  I  G++  ++ 
Sbjct: 292 ASGVDNSYLISLVLAITNCLFTAPSIYLIERFGRRWSLLVGGVIMALTQILTGVMHSASP 351

Query: 234 WLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
                 + +  G I  I A  P      +  ++     +  I   + +  +  +  ++V 
Sbjct: 352 DSTASKNMLVAGAIIFIAAYAPTWGIGGWIVMTEPFSNRLRITQTSLVLGFYWVITWLVG 411

Query: 294 KTLRPFLVGGP---IKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMA 336
             + P++V      + +     +F    G+  + ++  F     +A
Sbjct: 412 -FVTPYMVDETAADLGVNVAYIWF----GIGLLSIIWAFFFVPELA 452


>gi|224797148|gb|ACN62568.1| bifunctional ABC lipid A transporter [Dietzia sp. E1]
          Length = 621

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 88/283 (31%), Gaps = 16/283 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAP-VLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            + I+ ++I+ +   SL  L    A  V++A++   +   +                +IA
Sbjct: 40  TRRIVVFLILSVFGASLAVLTPVLAGRVVTAIVEASSVHVVV-----------GLAVLIA 88

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V+         L+   + E   ++        H   +P                   
Sbjct: 89  AIGVVEAVAAVFTRLWSARIGEGL-ILDLRRAVFDHVQTMPVAFFMRTRTGALVSRLNND 147

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +   Q     + + + +N +  +   A   G+ +    LS++ + I LF     G  ++ 
Sbjct: 148 VMGAQRAFSDTLSGVVSNLVQLVLTLAVMAGINWQLTVLSVLLLPIFLFPARYVGKRLA- 206

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS--TFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +L      L  +   +++        +     G       E           GV + + +
Sbjct: 207 RLRREASDLNASMNDQMTERFNAGGATLVKLFGRPSAESAEFAARAGRVRGIGVRTALLM 266

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
            V    + ++   A      +  +  + G +   + + L   +
Sbjct: 267 SVFMNSLTLVSTLALALVYGLGGWFALNGGLDAGSVVALALLL 309


>gi|167763938|ref|ZP_02436065.1| hypothetical protein BACSTE_02320 [Bacteroides stercoris ATCC
           43183]
 gi|167698054|gb|EDS14633.1| hypothetical protein BACSTE_02320 [Bacteroides stercoris ATCC
           43183]
          Length = 1121

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 59/222 (26%), Gaps = 6/222 (2%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     S V     +   +      +      + L  K       + 
Sbjct: 53  GAPFFMLVANLFSQFASDASTVAKMVNYMSALMSGACILFLFWSITHLVRKL------VI 106

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +                    +   ++ F     ++   L    E 
Sbjct: 107 TDENNITKGQLITVMSSGLVGALAYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+   VP+  A G + A++A +
Sbjct: 167 VADEPHSDRWLILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKVPNANAKGSLLALLASM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              A + +  V   + + G         L  +    ++   +
Sbjct: 227 VLVAVVLYGIVPGIVKVGGWFELFFVNTLGMSFNSGVIVYII 268


>gi|163756530|ref|ZP_02163642.1| ATP/ADP translocase-like protein [Kordia algicida OT-1]
 gi|161323424|gb|EDP94761.1| ATP/ADP translocase-like protein [Kordia algicida OT-1]
          Length = 945

 Score = 38.0 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 73/224 (32%), Gaps = 7/224 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALII------GFTSWPIYSSFISKKEESSTFLAVIATV 68
           + +F+I+  L  +K     +  + +       G+    I +   S     +     +  V
Sbjct: 25  LCIFLIITVLLIVKPTINAIFLSQLGPEHLPYGYLLVAIVAVLTSYFYNKAIQRFSLIKV 84

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
           +V  L    L FL +  +L+   +   ++     G+ +   ++     + A+ ++    +
Sbjct: 85  TVSTLIFFSLGFLIFSALLQFSMINDWILYVYYLGVSLFAVIATSQFWILANMVYNSREA 144

Query: 129 HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQL 188
                 I +          ++               L+ + ++  +    +    +  ++
Sbjct: 145 KRLFGFIGAGAIAGGVFGGYLTSIVVSAFGNETVMLLAAVLILCCIPILQKVW-KLRLKV 203

Query: 189 DSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +        + +  +      I S    +T +A+  G+ +  A
Sbjct: 204 MNTYIRNQRKFNETSNSETSLKIISKSKHLTYLALITGISVVVA 247


>gi|213163351|ref|ZP_03349061.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
          Length = 101

 Score = 37.7 bits (86), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 1/91 (1%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
           + ++   ++ +IL  + F      P + AL I     P+      +          +  V
Sbjct: 12  KIVIMLGMLVVILSGIRFAADIIVPFILALFIAVVLNPVVQRMT-RCRIPRVIAVSLLIV 70

Query: 69  SVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
            ++ L ++ L +L            S     
Sbjct: 71  IIVMLMVLLLAYLGTSLNELAVPYRSIAPHW 101


>gi|326472215|gb|EGD96224.1| high affinity glucose transporter [Trichophyton tonsurans CBS
           112818]
          Length = 794

 Score = 37.7 bits (86), Expect = 2.9,   Method: Composition-based stats.
 Identities = 32/318 (10%), Positives = 70/318 (22%), Gaps = 36/318 (11%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-----IVPLLFLFYYGMLEMKELVSK 95
            F S  +            T L       V   F      +P++ +           +S 
Sbjct: 292 AFISSLLVGKIGDIIGRRRTILYGSMVFFVGGAFQTFATGIPMMLVGRIVAGLGVGALST 351

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +V   Q  I  P     +    +   +     S              +  +    +    
Sbjct: 352 IVPVYQSEISPPHNRGQLACIEFTGNICGYAASVWVDYFCSYIQSDFSWRLPLFLQCVMG 411

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAYWKKISRIV----- 207
             + F    +      +       +G  +   L     L        +++I   V     
Sbjct: 412 ALLGFGSLIICESPRWLLDHDHDEEGMVVIANLYGKGDLHNDKARQEYREIKTNVLVTRQ 471

Query: 208 ------PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGA- 258
                   + +  +  + I    +     +   +     P            A++  G  
Sbjct: 472 EGERTYKDMFKRYYRRVFIAMSAQAFAQLNGINVISYYAPLVFESAGWVGRDAILMTGIN 531

Query: 259 ----PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP--FLPT 312
                +S       +   G         +   I L  +   +        I +      T
Sbjct: 532 GITYLLSTIPPWYLVDRWGRRPILLSGAILMIISLSAMAYFI-------HINISYTPALT 584

Query: 313 FFGLVGGVRTMGL-LGLF 329
              ++    T G   G  
Sbjct: 585 VISVMIYNATFGFSWGPI 602


>gi|321313869|ref|YP_004206156.1| hypothetical protein BSn5_12575 [Bacillus subtilis BSn5]
 gi|320020143|gb|ADV95129.1| hypothetical protein BSn5_12575 [Bacillus subtilis BSn5]
          Length = 585

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 76/271 (28%), Gaps = 5/271 (1%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
           + +Y L       + +L+I   +      F         +   I    +  + I+     
Sbjct: 19  ILVYILFSLLFTTILSLVIPILTKNTVDQFTDGTV---NWALTIMLAGLFLINILLSGLS 75

Query: 82  FYYGMLEMKELVSKVVL-ANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           FYY     +     +      H + +P    D              +    +        
Sbjct: 76  FYYLAFLGENATYYIRDKMFSHILDLPLTFFDKNESGQIVSRVIDDVELMNTFISDKIPN 135

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             +  I         F + +    L +I + I+L      G  +  ++    ++    + 
Sbjct: 136 FASQLIVVAGSLILLFVLDWKITLLMLISVPISLAVMIPLGNKM-YKISLEKQNNMAIFT 194

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPI 260
            +IS     +  +          G+G V+    +   +        +  IM+ +     +
Sbjct: 195 ARISSAFSGIRLTKSYTAEKEEYGKGNVILKRIFKLNLKDTKIQAYMMPIMSTVILMIIL 254

Query: 261 SFTAVSIYLLIKGNIFNATCLFLWGAIELFI 291
                    L +G I   T + +   +  F+
Sbjct: 255 LLVGYGGIRLSEGTISPGTFVAIIFYLVQFV 285


>gi|297521524|ref|ZP_06939910.1| putative permease perM [Escherichia coli OP50]
          Length = 80

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 2/80 (2%)

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSI--YLLIKGNIFNATCLFLWGAIELFIVDKTLR 297
             + L V+     +IP       T   +   L   G        F    I   +    L 
Sbjct: 1   YSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLV 60

Query: 298 PFLVGGPIKLPFLPTFFGLV 317
           P L    + L  L     +V
Sbjct: 61  PVLFSEAVNLHPLVIILSVV 80


>gi|268591264|ref|ZP_06125485.1| potassium efflux system KefA [Providencia rettgeri DSM 1131]
 gi|291313235|gb|EFE53688.1| potassium efflux system KefA [Providencia rettgeri DSM 1131]
          Length = 1125

 Score = 37.7 bits (86), Expect = 3.2,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 71/272 (26%), Gaps = 14/272 (5%)

Query: 50  SFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRW 109
                   + + +  + T S + L  + +   +Y  +      +  + L     I     
Sbjct: 690 WQEKGSHLTRSIVVTLLTFSPLILVGLMMAGYYYTTLRLANRWIDSLYLLLLWYITYSAC 749

Query: 110 LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN---GIDFIPRFASRFGMIFLDYCLS 166
           L  +                  S +  +E          I+ I + + R   + L    +
Sbjct: 750 LRGLTLVARKLAYQRAIERRAMSKQEDAENEPIKEPPMTIELISQQSLRLTTMVLFIIFA 809

Query: 167 IIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI--- 223
           + F  I   F     F  S  L S                +  +I +  + +    +   
Sbjct: 810 LAFYTIWSDFITIFSFLDSVNLWSYTATSAEGGNILQFVTLANLILALVIIIVSWVMTRN 869

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GL+         +       + T +  +I G   I+   +      K     A     
Sbjct: 870 LPGLLEVLVLSRLKLRQGSTYAITTILTYIIVGIGAIASLGMIGVTWNKLQWLAAALTVG 929

Query: 284 WGAIELFIVDKTL--------RPFLVGGPIKL 307
            G     I    +        RP  +G  + +
Sbjct: 930 LGFGLQEIFANFVSGIILLFERPIRIGDTVTI 961


>gi|326483271|gb|EGE07281.1| MFS monosaccharide transporter [Trichophyton equinum CBS 127.97]
          Length = 791

 Score = 37.7 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 31/318 (9%), Positives = 69/318 (21%), Gaps = 36/318 (11%)

Query: 41  GFTSWPIYSSFISKKEESSTFLAVIATVSVMCLF-----IVPLLFLFYYGMLEMKELVSK 95
            F S  +            T L       V   F      +P++ +           +S 
Sbjct: 289 AFISSLLVGKIGDIIGRRRTILYGSMVFFVGGAFQTFATGIPMMLVGRIVAGLGVGALST 348

Query: 96  VVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASR 155
           +V   Q  I  P     +    +   +     S              +  +    +    
Sbjct: 349 IVPVYQSEISPPHNRGQLACIEFTGNICGYAASVWVDYFCSYIQSDFSWRLPLFLQCVMG 408

Query: 156 FGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD---SLGEHLFPAYWKKISRIV----- 207
             + F    +      +       +G  +   L     L        +++I   V     
Sbjct: 409 ALLGFGSLIICESPRWLLDHDHDEEGMVVIANLYGKGDLHNDKARQEYREIKTNVLVTRQ 468

Query: 208 ------PKVIRSTFLGMTIIAIGEGLVLGSAYWLAGV--PSHVALGVITAIMAMIPGGA- 258
                   + +  +  + I    +     +   +     P            A++  G  
Sbjct: 469 EGERTYKDMFKRYYRRVFIAMSAQAFAQLNGINVISYYAPLVFESAGWVGRDAILMTGIN 528

Query: 259 ----PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLP--FLPT 312
                +S       +   G         +   I L  +   +        I +      T
Sbjct: 529 GITYLLSTIPPWYLVDRWGRRPILLSGAILMIISLSAMAYFI-------HINISYTPALT 581

Query: 313 FFGLVGGVRTMGL-LGLF 329
              ++      G   G  
Sbjct: 582 VISVMIYNAAFGFSWGPI 599


>gi|323343994|ref|ZP_08084220.1| hypothetical protein HMPREF0663_10756 [Prevotella oralis ATCC
           33269]
 gi|323094723|gb|EFZ37298.1| hypothetical protein HMPREF0663_10756 [Prevotella oralis ATCC
           33269]
          Length = 1109

 Score = 37.3 bits (85), Expect = 3.4,   Method: Composition-based stats.
 Identities = 20/282 (7%), Positives = 65/282 (23%), Gaps = 19/282 (6%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   +      ++    S+V         +    + +      + L  K +       
Sbjct: 53  GAPFFMITANLFSQLASDPSQVARMVNIMSALLSATTILFLFWSVTHLTRKLILKDWDGL 112

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
              +                     F D             +       +   +    +H
Sbjct: 113 TTGKLIAIEA-----SGLVGSLIYTFSDTFWFSAVEGEVYAYSSAFTAIVFWLILKWEDH 167

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +  +   ++  +   +     +  +    ++    +       +   +I   ++ +
Sbjct: 168 ADEPHSDRWLVLIMYMTGLSIGVHLLNLLCIPAIVLVFCYRRFPDIELKGSLIALAVSFV 227

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFL------WGAIELFIVDKTLRPFLV------- 301
              A +      I  +          +             + +V   +   +        
Sbjct: 228 LVAAVLYGVIPGIITVGGWFELFFVNVLGCPFNTGVIVYIVLLVGAVIW-AIYESYTDRN 286

Query: 302 GGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           G    + FL     L       G   + IG +++A++  +  
Sbjct: 287 GKLQNISFLLAVAMLGIPFYGYGWSAVIIGIIVLAILWFVLN 328


>gi|261341075|ref|ZP_05968933.1| potassium efflux system KefA [Enterobacter cancerogenus ATCC 35316]
 gi|288316941|gb|EFC55879.1| potassium efflux system KefA [Enterobacter cancerogenus ATCC 35316]
          Length = 1117

 Score = 37.3 bits (85), Expect = 3.5,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 71/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I    WP+      +          +  V+V  L I+PL  +           +    
Sbjct: 668 LLIAVLMWPMC-----RDSWRDKESHNLRLVTVTVLAIIPLALMVLTATGYFYTTLRLSG 722

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            + + ++  Q          +      I  
Sbjct: 723 RWIETVYLVILWNLLFQTVLRGLSVAARRIAYRRAIARRQHQVKEGAEGAEPQEEPTIAL 782

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   + +    +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 783 EQVNQQTMRITMLVMVALFAVMFWAIWSDLITVFAYLDSITLWQYNATEAGATVMKSVTM 842

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +  + I         GL+         +    +  + T +  +I     ++   
Sbjct: 843 GSLLFALVSLVIAWALIRNLPGLLEVLVLSRLNLRQGASYAITTILNYVIIIVGAMTVFG 902

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 903 SLGVAWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 939


>gi|255325153|ref|ZP_05366259.1| pts system fructose-specific eiibc component [Corynebacterium
           tuberculostearicum SK141]
 gi|255297718|gb|EET77029.1| pts system fructose-specific eiibc component [Corynebacterium
           tuberculostearicum SK141]
          Length = 707

 Score = 37.3 bits (85), Expect = 3.6,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 5/112 (4%)

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            ++        G       G I   +A  PG AP         +L  G I       L G
Sbjct: 407 AVLFAIGQAAMGFIVAALSGYIAFALAGRPGIAPGFAGGAIAVILGAGFIGGLVTGLLAG 466

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            I    +     P  +G  + +  +P    L+ G+       L +G  L A+
Sbjct: 467 FIA-MWIGNWKVPRWLGSLMPVVIIPLLTSLIVGLAMY----LLLGAPLAAI 513


>gi|219852249|ref|YP_002466681.1| hypothetical protein Mpal_1646 [Methanosphaerula palustris E1-9c]
 gi|219546508|gb|ACL16958.1| hypothetical protein Mpal_1646 [Methanosphaerula palustris E1-9c]
          Length = 438

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 69/205 (33%), Gaps = 13/205 (6%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+  + +P  +    ++ I  + L+ + GF    + AL++ + +  +     ++   +  
Sbjct: 235 MKVPLPSPIPMSWISLLMIGGLFLFLIIGFV--FIPALVLAYITVGLSRWIEAR--SAPW 290

Query: 61  FLAVIATVSVMCLFIVPLLFL-----FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             +++  +  +CL +VP   +        G++E   L + + +      P P +L  +  
Sbjct: 291 IHSLLPPLVAVCLIVVPAGIVPFVDQVSAGVIEGIVLAALISMGV--MTPWPLFLERLKV 348

Query: 116 GMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF 175
               + ++   +     L +    +  T     +  F       F    +  +   +   
Sbjct: 349 VKPQTAVFICGIGTFFVLTLGIMPW--TQLSPDLGGFLIALAQPFPSAAVRSVIFYLESV 406

Query: 176 FFYRDGFSISQQLDSLGEHLFPAYW 200
                 +++    D +         
Sbjct: 407 VIAIVLYAMILFWDRVRRRRQSKKH 431


>gi|154149282|ref|YP_001406046.1| FTR1 family iron permease [Campylobacter hominis ATCC BAA-381]
 gi|153805291|gb|ABS52298.1| iron permease, FTR1 family [Campylobacter hominis ATCC BAA-381]
          Length = 679

 Score = 37.3 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 84/259 (32%), Gaps = 12/259 (4%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           +F + +++   +G  A ++ A ++ +           K + S+    V ++V +  L   
Sbjct: 420 LFFLALTIILREGLEALIIVAAVVAYLI---------KTQNSNKLGIVYSSVGIAVLLSF 470

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPR-WLSDIPGGMWASELWTKHLSHPQSLKI 135
              ++         +    +  A      +   ++         ++ W +++    S  +
Sbjct: 471 FTAWVVNLLFTNAAQSREILEGATMLIAVILLFYVGFWLLSNAGAKKWNRYIKGKISQSL 530

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHL 195
                     + F+  +      +     L      I        GF +   + ++   +
Sbjct: 531 SKGDKTALWWVSFLAVYREGAETVLFYQALIFDAQKIGAINMIIYGFLLGCIVLAVLFII 590

Query: 196 FPAYWKKI-SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           F A+  KI  R       +    M I+  G+G++      +  VP+ +        + + 
Sbjct: 591 FKAFSIKIPLRAFFIATSAIIFYMAIVFTGKGVMELVEGKVF-VPTIIHSMPTITWLGIY 649

Query: 255 PGGAPISFTAVSIYLLIKG 273
           P    +    + +  LI G
Sbjct: 650 PYVQSLIPQILMVLALIVG 668


>gi|161510178|ref|YP_001575837.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|160368987|gb|ABX29958.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|315196588|gb|EFU26936.1| bacteriophage tail length tape measure protein [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320142420|gb|EFW34234.1| phage tail tape measure protein, TP901 family, core region
           [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 1509

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 93/327 (28%), Gaps = 57/327 (17%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPV-----LSALIIGFTS--WPIYSSFISKKEE-SS 59
              ++   I   I   ++ L  F + +     + A ++   +    + S   +K     +
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVTVLAPLLAGIAKADGLISFLSTKVPILGT 545

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F A+   + ++   +  L   F     + +   + V  A +                  
Sbjct: 546 VFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNDAIESVKQTFSNFIQFIQPFI- 604

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                            S   +    +  I  FA         +       I+       
Sbjct: 605 ----------------DSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL---- 644

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +I   +  + E +     K I   + +V+        I    + L++ +   + GV 
Sbjct: 645 --QNICNFIKVIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV- 695

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                G +  I+ +I   + +              +++A  + L G   + ++   ++ +
Sbjct: 696 ---IQGTLNIILGLIKFFSSLFTG-------DWRGVWDAIIMILKG--VVQLIWNLIQLW 743

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            VG  +             G    GL+
Sbjct: 744 FVGKILG-------VVRYFGGLLKGLI 763


>gi|329956468|ref|ZP_08297065.1| hypothetical protein HMPREF9445_01927 [Bacteroides clarus YIT
           12056]
 gi|328524365|gb|EGF51435.1| hypothetical protein HMPREF9445_01927 [Bacteroides clarus YIT
           12056]
          Length = 1114

 Score = 37.3 bits (85), Expect = 3.8,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 58/222 (26%), Gaps = 6/222 (2%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     + V     +   +      +      + L  K       + 
Sbjct: 53  GAPFFMLVANLFSQFASDATTVAKMVNYMSALMSGACILFLFWSITHLVRKL------VI 106

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +                    +   ++ F     ++   L    E 
Sbjct: 107 TDENNITKGQLITVMGSGLVGALAYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+   VP   A G + A++A +
Sbjct: 167 VADEPHSDRWLILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKVPDANAKGSLLALLASM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTL 296
              A + +  V   + + G         L  +    ++   +
Sbjct: 227 VLVAAVLYGIVPGIVKVGGWFELFFVNTLGMSFNSGVIVYII 268


>gi|186510755|ref|NP_190359.4| ABCA4 (ATP BINDING CASSETTE SUBFAMILY A4); ATPase, coupled to
           transmembrane movement of substances / transporter
           [Arabidopsis thaliana]
          Length = 946

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 56/220 (25%), Gaps = 17/220 (7%)

Query: 27  LKGFFAPVLSALIIGFTSWPI-----------YSSFISKKEE---SSTFLAVIATVSVMC 72
           +     P+    +I    +P+           +   I K         ++   A    + 
Sbjct: 339 IASVIGPIFLTWVI-VLLFPVILNSLVYEKQQHLRIIMKMHGLGDGPYWMITYAYFLAIS 397

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIP--GGMWASELWTKHLSHP 130
              +  L +F   + ++ EL   V L                    +  S  +    +  
Sbjct: 398 TLYIICLMIFGSAIEQVSELFLLVGLKFFRFNDYSIQFIFYFLCINLQISIAFLVSSAFS 457

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDS 190
           +        +L   G   +  F  +F +  L +    IF++     F            +
Sbjct: 458 KVETASVAAYLYVFGSGLLGGFLFQFMLEGLSFPRGWIFVMELYPGFSLYRGLYEFSQYA 517

Query: 191 LGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLG 230
           L   L  +   K        +   F  + I      +   
Sbjct: 518 LKRQLNGSDGMKWKYFSDSAMDEVFYIIIIEWFLALIAAY 557


>gi|87161338|ref|YP_494581.1| phi77 ORF001-like protein, phage tail tape measure protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|294849505|ref|ZP_06790247.1| phage tail length tape-measure protein [Staphylococcus aureus
           A9754]
 gi|87127312|gb|ABD21826.1| phi77 ORF001-like protein, phage tail tape measure protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|294823642|gb|EFG40069.1| phage tail length tape-measure protein [Staphylococcus aureus
           A9754]
          Length = 1509

 Score = 37.3 bits (85), Expect = 4.0,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 93/327 (28%), Gaps = 57/327 (17%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPV-----LSALIIGFTS--WPIYSSFISKKEE-SS 59
              ++   I   I   ++ L  F + +     + A ++   +    + S   +K     +
Sbjct: 486 RSIVIFGGIAAAIGPVVFGLGAFISTIGNAVTVLAPLLAGIAKADGLISFLSTKVPILGT 545

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
            F A+   + ++   +  L   F     + +   + V  A +                  
Sbjct: 546 VFTALTGPIGIVLGVLAGLAVAFTIAYKKSETFRNFVNDAIESVKQTFSNFIQFIQPFI- 604

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
                            S   +    +  I  FA         +       I+       
Sbjct: 605 ----------------DSVKNVFKQAVSAIVDFAKDIWSQINGFFNENGISIVQAL---- 644

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              +I   +  + E +     K I   + +V+        I    + L++ +   + GV 
Sbjct: 645 --QNICNFIKVIFEFILNFVIKPIMFAIWQVM------QFIWPAVKALIVSTWENIKGV- 695

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPF 299
                G +  I+ +I   + +              +++A  + L G   + ++   ++ +
Sbjct: 696 ---IQGTLNIILGLIKFFSSLFTG-------DWRGVWDAIIMILKG--VVQLIWNLIQLW 743

Query: 300 LVGGPIKLPFLPTFFGLVGGVRTMGLL 326
            VG  +             G    GL+
Sbjct: 744 FVGKILG-------VVRYFGGLLKGLI 763


>gi|89889591|ref|ZP_01201102.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
 gi|89517864|gb|EAS20520.1| conserved hypothetical transmembrane protein [Flavobacteria
           bacterium BBFL7]
          Length = 934

 Score = 37.3 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 22/253 (8%), Positives = 65/253 (25%), Gaps = 15/253 (5%)

Query: 15  MIMFIILVSLYFLKGFF--------------APVLSALIIGFTSWPIYSSFISKKEESST 60
           + +F+I+ +L  +K                    +   II       Y   + +      
Sbjct: 27  LYLFLIIGALLVVKPTINALFLSTAGADSLSIAFILTAIIAVVISFSYHKLLERFNLRYI 86

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             + +   S+    I  L+      ++ +      V +           L+++   +  +
Sbjct: 87  IRSTLWFFSIAFFAIGLLVMFDVTNLILVYTFYLFVGIYALLVTSQFWVLANVIFNIREA 146

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
           +     +        ++  ++ +  + F+   A       L                Y+ 
Sbjct: 147 KRLFGFIGAGGIAGGIAGGYVTSILVPFLGNGALIIV-ASLMIASCPYIYHKIKSHSYKG 205

Query: 181 GFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
              +  +   +            SR +  +     +G+ +  + +      A      P 
Sbjct: 206 KMKLEVKKREVVSKESSIKLIINSRHLTHLAGVIGIGVLVAKLVDYEFSYLASQQIQDPM 265

Query: 241 HVALGVITAIMAM 253
            +A          
Sbjct: 266 ELASFFGFWFSTF 278


>gi|298484243|ref|ZP_07002407.1| membrane protein [Bacteroides sp. D22]
 gi|298269568|gb|EFI11165.1| membrane protein [Bacteroides sp. D22]
          Length = 1137

 Score = 37.3 bits (85), Expect = 4.2,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 85/298 (28%), Gaps = 37/298 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +    V+ V     +   +      +      + L  K       + 
Sbjct: 53  GAPFFMLVANLFSQFASDVTTVAKMVNYMSALMSGACILFLFWSITHLVRKL------II 106

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +        +           +   ++ F     ++   L    E 
Sbjct: 107 TDENNITKGQLITVMGSGLIGALVYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+    P+  A G + A++  +
Sbjct: 167 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKTPNATAKGSLIALLGSM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGA-----IELFIVDKTLRPFLV-------- 301
              A + +  V   +   G  F    +   G      + ++I+   L   L+        
Sbjct: 227 VLVAAVLYGIVPGIV-KVGGWFELLFVNGLGMSFNSGVVVYII--LLAAALIWGVYESYT 283

Query: 302 ---GGPIKLPFLPTFF------------GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + + F+ T               ++ G+  +  LGL++ P + A I   W+ 
Sbjct: 284 EKNKTRMAISFILTIALLGIPFYGHGASSIIIGILVIAALGLYLAPSVQAKIKERWRI 341


>gi|254875623|ref|ZP_05248333.1| carboxypeptidase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254841622|gb|EET20058.1| carboxypeptidase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282160092|gb|ADA79483.1| metallocarboxypeptidase, M32 family protein [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 944

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 31/333 (9%), Positives = 76/333 (22%), Gaps = 25/333 (7%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLF 80
           +  L         ++   ++      +       K    +F      + +     + ++ 
Sbjct: 16  IWVLVLSGAVIGTMI--GLLATAFQLLLDFIFKIKLALFSFSGGNLFIEIAMSISLSIVM 73

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
           +     +  K          Q      +    I   +   +  +   S    L +  E  
Sbjct: 74  VLISIFIVKKFAKEAGGSGIQEVEGALKGCRKIRKRVMPVKFISGLFSLGSGLSLGKEGP 133

Query: 141 LKTNGIDFIPRFA--SRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
                      F    +    + +  +S          F      I              
Sbjct: 134 SIHMAAALAQFFVDKFKLTTKYANAVISAGAGAGLAAAFNTPLSGII-----FVIEEMNR 188

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG-VPSHVALGVITAIMAMIPGG 257
            ++     +  V+ +  +   I     G     +      VP +     +   +     G
Sbjct: 189 KFRFSVSAIKCVLVACIMSTVISRAIMGNPPAISVETFSSVPQNTLWLFMVLGIIFGYFG 248

Query: 258 APISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGP-----------IK 306
              + + + +               +     +F +   L P  VGG            + 
Sbjct: 249 LLFNKSLIKVTNFFSEGSKKRYWTLVIIVCIIFGIGVVLSPNAVGGGYIVIANTLDYNLS 308

Query: 307 LPFLPTFFGLVGGVRTM----GLLGLFIGPVLM 335
           +  L   F L           G+ G    P++ 
Sbjct: 309 IKMLLVLFVLRFAGVIFSYGTGVTGGIFAPMIA 341


>gi|331663168|ref|ZP_08364078.1| putative permease [Escherichia coli TA143]
 gi|331058967|gb|EGI30944.1| putative permease [Escherichia coli TA143]
          Length = 73

 Score = 36.9 bits (84), Expect = 4.7,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 31/58 (53%)

Query: 299 FLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWKESIMAIKENKEKI 356
            L+     LP +    G++GG+   G++GLFIGPVL+A+   ++   +  +    ++ 
Sbjct: 1   MLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLLAVSWRLFAAWVEEVPPPTDQP 58


>gi|319948108|ref|ZP_08022272.1| putative ABC transporter permease/ATP-binding protein [Dietzia
           cinnamea P4]
 gi|319438219|gb|EFV93175.1| putative ABC transporter permease/ATP-binding protein [Dietzia
           cinnamea P4]
          Length = 619

 Score = 36.9 bits (84), Expect = 4.8,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 87/283 (30%), Gaps = 16/283 (5%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAP-VLSALIIGFTSWPIYSSFISKKEESSTFLAVIA 66
            + I+ ++I+ +   SL  L    A  V++A++       +                +IA
Sbjct: 38  TRRIVVFLILSVFGASLAVLTPVLAGRVVTAIVEASPVQLVV-----------GLAVLIA 86

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
            + V+         L+   + E   ++        H   +P                   
Sbjct: 87  VIGVVEAVAAVFTRLWSARIGEGL-ILDLRRAVFDHVQTMPVAFFMRTRTGALVSRLNND 145

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
           +   Q     + + + +N +  +   A   G+ +    LS++ + I LF     G  ++ 
Sbjct: 146 VMGAQRAFSDTLSGVVSNLVQLVLTLAVMAGINWQLTVLSVLLLPIFLFPARYVGKRLA- 204

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRS--TFLGMTIIAIGEGLVLGSAYWLAGVPSHVAL 244
           +L      L  +   +++        +     G       E           GV + + +
Sbjct: 205 RLRREASDLNASMNDQMTERFNAGGATLVKLFGRPSAESAEFAARAGRVRGIGVRTALLM 264

Query: 245 GVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
            V    + ++   A      +  +  + G +   + + L   +
Sbjct: 265 SVFMNSLTLVSTLALALVYGLGGWFALNGGLDAGSVVALALLL 307


>gi|262405647|ref|ZP_06082197.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644409|ref|ZP_06722172.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|294810402|ref|ZP_06769059.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
 gi|262356522|gb|EEZ05612.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640244|gb|EFF58499.1| putative membrane protein [Bacteroides ovatus SD CC 2a]
 gi|294442367|gb|EFG11177.1| putative membrane protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 1139

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 85/298 (28%), Gaps = 37/298 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +    V+ V     +   +      +      + L  K       + 
Sbjct: 55  GAPFFMLVANLFSQFASDVTTVAKMVNYMSALMSGACILFLFWSITHLVRKL------II 108

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +        +           +   ++ F     ++   L    E 
Sbjct: 109 TDENNITKGQLITVMGSGLIGALVYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 168

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+    P+  A G + A++  +
Sbjct: 169 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKTPNATAKGSLIALLGSM 228

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGA-----IELFIVDKTLRPFLV-------- 301
              A + +  V   +   G  F    +   G      + ++I+   L   L+        
Sbjct: 229 VLVAAVLYGIVPGIV-KVGGWFELLFVNGLGMSFNSGVVVYII--LLAAALIWGVYESYT 285

Query: 302 ---GGPIKLPFLPTFF------------GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + + F+ T               ++ G+  +  LGL++ P + A I   W+ 
Sbjct: 286 EKNKARMAISFILTIALLGIPFYGHGASSIIIGILVIAALGLYLAPSVQAKIKERWRI 343


>gi|188494530|ref|ZP_03001800.1| potassium efflux system KefA [Escherichia coli 53638]
 gi|188489729|gb|EDU64832.1| potassium efflux system KefA [Escherichia coli 53638]
          Length = 1120

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLQYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|269836432|ref|YP_003318660.1| ABC transporter-like protein [Sphaerobacter thermophilus DSM 20745]
 gi|269785695|gb|ACZ37838.1| ABC transporter related protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 624

 Score = 36.9 bits (84), Expect = 4.9,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 73/288 (25%), Gaps = 26/288 (9%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIAT 67
            + ++ ++ + ++L  L       A  +   II                      A    
Sbjct: 38  RRQLVLFLALSVVLAILAVATPILAGRVVDAIIA------------------GASARRVV 79

Query: 68  VSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHL 127
           +    +  + +       +           L       V   +  +P   +        +
Sbjct: 80  LLASLIAAIAVAEAGIGILNRWLSARIGEGLILDLRTAVFDHVQRMPIAFFTRTRTGALV 139

Query: 128 SHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQ 187
           S   +  I ++          +         + +   +S    ++AL           + 
Sbjct: 140 SRLNNDVIGAQRAFSDTLSGVVSNLVMLALTLAVMVEISWQITLLALLLLPLFVLPARRM 199

Query: 188 LDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIG--------EGLVLGSAYWLAGVP 239
              L +    A     + +     R +  G T++ +         E           GV 
Sbjct: 200 GTRLAQLRREAANHNAAMLEQMTERFSAPGATLVKLYGRPEEESREFAARARRVRDIGVR 259

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAI 287
           S +   V    + ++   A      +  +  ++G +     + L   +
Sbjct: 260 SAMLQWVFITALTLVSALALALVYGLGGFYALRGQLDAGAVVALALLL 307


>gi|300947879|ref|ZP_07162029.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 116-1]
 gi|300452557|gb|EFK16177.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 116-1]
          Length = 1120

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|237716879|ref|ZP_04547360.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|229442862|gb|EEO48653.1| conserved hypothetical protein [Bacteroides sp. D1]
          Length = 1127

 Score = 36.9 bits (84), Expect = 5.0,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 85/298 (28%), Gaps = 37/298 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +    V+ V     +   +      +      + L  K       + 
Sbjct: 43  GAPFFMLVANLFSQFASDVTTVAKMVNYMSALMSGACILFLFWSITHLVRKL------II 96

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +        +           +   ++ F     ++   L    E 
Sbjct: 97  TDENNITKGQLITVMGSGLIGALVYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 156

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+    P+  A G + A++  +
Sbjct: 157 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKTPNATAKGSLIALLGSM 216

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGA-----IELFIVDKTLRPFLV-------- 301
              A + +  V   +   G  F    +   G      + ++I+   L   L+        
Sbjct: 217 VLVAAVLYGIVPGIV-KVGGWFELLFVNGLGMSFNSGVVVYII--LLAAALIWGVYESYT 273

Query: 302 ---GGPIKLPFLPTFF------------GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + + F+ T               ++ G+  +  LGL++ P + A I   W+ 
Sbjct: 274 EKNKARMAISFILTIALLGIPFYGHGASSIIIGILVIAALGLYLAPSVQAKIKERWRI 331


>gi|254160534|ref|YP_003043642.1| potassium efflux protein KefA [Escherichia coli B str. REL606]
 gi|253972435|gb|ACT38106.1| fused conserved hypothetical protein [Escherichia coli B str.
           REL606]
          Length = 1120

 Score = 36.9 bits (84), Expect = 5.1,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|324114690|gb|EGC08658.1| mechanosensitive ion channel protein [Escherichia fergusonii B253]
 gi|325498246|gb|EGC96105.1| potassium efflux protein KefA [Escherichia fergusonii ECD227]
          Length = 1119

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 668 LLIAFLVWPMC-----RESWRDKESHTMRLVTITILSIIPIALMVLTATGYFYTTLRLAG 722

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 723 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 782

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 783 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 842

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 843 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 902

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 903 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 939


>gi|237720636|ref|ZP_04551117.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450387|gb|EEO56178.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1127

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 85/298 (28%), Gaps = 37/298 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +    V+ V     +   +      +      + L  K       + 
Sbjct: 43  GAPFFMLVANLFSQFASDVTTVAKMVNYMSALMSGACILFLFWSITHLVRKL------II 96

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +        +           +   ++ F     ++   L    E 
Sbjct: 97  TDENNITKGQLITVMGSGLIGALVYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 156

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+    P+  A G + A++  +
Sbjct: 157 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKTPNATAKGSLIALLGSM 216

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGA-----IELFIVDKTLRPFLV-------- 301
              A + +  V   +   G  F    +   G      + ++I+   L   L+        
Sbjct: 217 VLVAAVLYGIVPGIV-KVGGWFELLFVNGLGMSFNSGVVVYII--LLAAALIWGVYESYT 273

Query: 302 ---GGPIKLPFLPTFF------------GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + + F+ T               ++ G+  +  LGL++ P + A I   W+ 
Sbjct: 274 EKNKTRMAISFILTIALLGIPFYGHGASSIIIGILVIAALGLYLAPSVQAKIKERWRI 331


>gi|75761696|ref|ZP_00741640.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490809|gb|EAO54081.1| Hypothetical membrane spanning protein [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 239

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 61/232 (26%), Gaps = 22/232 (9%)

Query: 25  YFLKGFFAPVLSALIIGFTSWPIYSSFISKK----EESSTFLAVIATVSVMCLFIVPLLF 80
           Y L+     +L   I+ +           K       +   +     V ++    + L  
Sbjct: 26  YGLQSMLNLILITFILTYLMDRFQKFISRKLDHFMPINRKIIIAFLYVMLIGGIAITLFK 85

Query: 81  LFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETF 140
                 +++ +L+ +  +  ++                 + +    LS      +     
Sbjct: 86  YLPVLTIQISQLIYQFNVFLRNPPD------SELIKYAVNAVNHMELSKYVGQGVDILYK 139

Query: 141 LKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYW 200
             TN   F  +      +           +   + F          ++            
Sbjct: 140 SITNVGKFGLQVLLSLILSLFFLLEKSRIVGFTVKFKESRLAIFYTEI------------ 187

Query: 201 KKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMA 252
           +   +   +          +IA+   ++   A W+ G P  + L ++   +A
Sbjct: 188 EYFGKKFARSFGKVIEAQFLIAVVNCVLSVIALWILGFPQLLGLALMIFCLA 239


>gi|312970563|ref|ZP_07784744.1| potassium efflux system kefA [Escherichia coli 1827-70]
 gi|310337212|gb|EFQ02350.1| potassium efflux system kefA [Escherichia coli 1827-70]
 gi|315616593|gb|EFU97210.1| potassium efflux system kefA [Escherichia coli 3431]
 gi|323938651|gb|EGB34900.1| mechanosensitive ion channel [Escherichia coli E1520]
          Length = 1118

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|308188279|ref|YP_003932410.1| MscS family protein precursor [Pantoea vagans C9-1]
 gi|308058789|gb|ADO10961.1| Putative MscS family protein precursor [Pantoea vagans C9-1]
          Length = 1055

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 29/296 (9%), Positives = 75/296 (25%), Gaps = 23/296 (7%)

Query: 32  APVLSALIIGFTSWPIYSSFISKKEES--STFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            P+L A +I          FI            A+      + L +  ++ L  +G LE 
Sbjct: 511 LPLLWAFMISAAFARPNGLFIVHFRWPQNRVARAMRYYSLSIGLIVPLIMLLIAFGNLED 570

Query: 90  KELVSKVVLANQHGI-----PVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTN 144
           ++  S +       I      V   L      ++  +         + L  L        
Sbjct: 571 RQFSSSLGRLCFILICGAISIVTVSLKRSGIPLYLDKEGNGENIVNRMLWNLMIAMPLMA 630

Query: 145 GIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKIS 204
            +     + +    +      S+    + L  ++     +  Q   LG          + 
Sbjct: 631 ALASAVGYLATAQALLARLETSVAIWFLLLVIYHIIRRWMLIQRRRLGFDRARQRRADML 690

Query: 205 RIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
               +               E         +  +   ++   +  + +++   A +S   
Sbjct: 691 ANRARSEEEKEQSALNTDAIE-----IEEPVIDLD-AISAQSLRLVRSILTLIALVSVIV 744

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGV 320
           +   +           L+        +    ++P  +G             ++  +
Sbjct: 745 LWSEIHSAFGFLENIQLWDVSTSVQGVES--IQPITLGS--------VLIAILVFI 790


>gi|16128449|ref|NP_414998.1| fused conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|89107334|ref|AP_001114.1| fused mechanosensitive channel proteins [Escherichia coli str. K-12
           substr. W3110]
 gi|157159991|ref|YP_001457309.1| potassium efflux protein KefA [Escherichia coli HS]
 gi|170021147|ref|YP_001726101.1| potassium efflux protein KefA [Escherichia coli ATCC 8739]
 gi|170080050|ref|YP_001729370.1| fused protein; mechanosensitive channel protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|194437418|ref|ZP_03069515.1| potassium efflux system KefA [Escherichia coli 101-1]
 gi|209917681|ref|YP_002291765.1| potassium efflux protein KefA [Escherichia coli SE11]
 gi|238899752|ref|YP_002925548.1| fused hypothetical protein [Escherichia coli BW2952]
 gi|253774545|ref|YP_003037376.1| potassium efflux protein KefA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|256023917|ref|ZP_05437782.1| potassium efflux protein KefA [Escherichia sp. 4_1_40B]
 gi|300919869|ref|ZP_07136336.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 115-1]
 gi|300930232|ref|ZP_07145645.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 187-1]
 gi|300958034|ref|ZP_07170198.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 175-1]
 gi|301647393|ref|ZP_07247204.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 146-1]
 gi|307137108|ref|ZP_07496464.1| potassium efflux protein KefA [Escherichia coli H736]
 gi|331640987|ref|ZP_08342122.1| potassium efflux system KefA (Protein aefA) [Escherichia coli H736]
 gi|2501527|sp|P77338|KEFA_ECOLI RecName: Full=Potassium efflux system KefA; Short=Protein AefA;
           Flags: Precursor
 gi|1707458|emb|CAA69140.1| membrane protein [Escherichia coli]
 gi|1773147|gb|AAB40219.1| similar to H. influenzae HI0195.1 [Escherichia coli]
 gi|1786670|gb|AAC73567.1| fused conserved protein [Escherichia coli str. K-12 substr. MG1655]
 gi|85674604|dbj|BAE76244.1| fused mechanosensitive channel proteins [Escherichia coli str. K12
           substr. W3110]
 gi|157065671|gb|ABV04926.1| potassium efflux system KefA [Escherichia coli HS]
 gi|169756075|gb|ACA78774.1| MscS Mechanosensitive ion channel [Escherichia coli ATCC 8739]
 gi|169887885|gb|ACB01592.1| fused conserved protein; mechanosensitive channel protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|194423587|gb|EDX39577.1| potassium efflux system KefA [Escherichia coli 101-1]
 gi|209910940|dbj|BAG76014.1| putative channel protein [Escherichia coli SE11]
 gi|238861177|gb|ACR63175.1| fused conserved protein [Escherichia coli BW2952]
 gi|242376247|emb|CAQ30938.1| kefA [Escherichia coli BL21(DE3)]
 gi|253325589|gb|ACT30191.1| MscS Mechanosensitive ion channel [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253976645|gb|ACT42315.1| fused conserved protein [Escherichia coli BL21(DE3)]
 gi|260450349|gb|ACX40771.1| MscS Mechanosensitive ion channel [Escherichia coli DH1]
 gi|300315301|gb|EFJ65085.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 175-1]
 gi|300413085|gb|EFJ96395.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 115-1]
 gi|300461804|gb|EFK25297.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 187-1]
 gi|301074477|gb|EFK89283.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 146-1]
 gi|309700725|emb|CBJ00021.1| potassium efflux protein [Escherichia coli ETEC H10407]
 gi|315135146|dbj|BAJ42305.1| potassium efflux protein KefA [Escherichia coli DH1]
 gi|323943270|gb|EGB39426.1| mechanosensitive ion channel protein [Escherichia coli E482]
 gi|323963454|gb|EGB59016.1| mechanosensitive ion channel protein [Escherichia coli H489]
 gi|323972319|gb|EGB67529.1| mechanosensitive ion channel protein [Escherichia coli TA007]
 gi|324016735|gb|EGB85954.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 117-3]
 gi|331037785|gb|EGI10005.1| potassium efflux system KefA (Protein aefA) [Escherichia coli H736]
          Length = 1120

 Score = 36.9 bits (84), Expect = 5.2,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|160882207|ref|ZP_02063210.1| hypothetical protein BACOVA_00153 [Bacteroides ovatus ATCC 8483]
 gi|156112410|gb|EDO14155.1| hypothetical protein BACOVA_00153 [Bacteroides ovatus ATCC 8483]
          Length = 1137

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 85/298 (28%), Gaps = 37/298 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +    V+ V     +   +      +      + L  K       + 
Sbjct: 53  GAPFFMLVANLFSQFASDVTTVAKMVNYMSALMSGACILFLFWSITHLVRKL------II 106

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +        +           +   ++ F     ++   L    E 
Sbjct: 107 TDENNITKGQLITVMGSGLIGALVYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+    P+  A G + A++  +
Sbjct: 167 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKTPNATAKGSLIALLGSM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGA-----IELFIVDKTLRPFLV-------- 301
              A + +  V   +   G  F    +   G      + ++I+   L   L+        
Sbjct: 227 VLVAAVLYGIVPGIV-KVGGWFELLFVNGLGMSFNSGVVVYII--LLAAALIWGVYESYT 283

Query: 302 ---GGPIKLPFLPTFF------------GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + + F+ T               ++ G+  +  LGL++ P + A I   W+ 
Sbjct: 284 EKNKARMAISFILTIALLGIPFYGHGASSIIIGILVIAALGLYLAPSVQAKIKERWRI 341


>gi|218549867|ref|YP_002383658.1| potassium efflux protein KefA [Escherichia fergusonii ATCC 35469]
 gi|218357408|emb|CAQ90047.1| fused conserved hypothetical protein ; mechanosensitive channel
           protein [Escherichia fergusonii ATCC 35469]
          Length = 1119

 Score = 36.9 bits (84), Expect = 5.3,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 668 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAG 722

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 723 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 782

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 783 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 842

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 843 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 902

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 903 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 939


>gi|302658781|ref|XP_003021090.1| hypothetical protein TRV_04803 [Trichophyton verrucosum HKI 0517]
 gi|291184969|gb|EFE40472.1| hypothetical protein TRV_04803 [Trichophyton verrucosum HKI 0517]
          Length = 625

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 34/338 (10%), Positives = 81/338 (23%), Gaps = 36/338 (10%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   I F+  +    +  +FAPV+ A ++G    P       +   +      + T++  
Sbjct: 238 LWASIFFVAALGFKQMSLYFAPVVFAYLLGICFSP-------RIRPNRLLGIALITIAAF 290

Query: 72  CLFIVPLLFL--------------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
            +   PLL                    M  +   + +     Q  + + + +  I    
Sbjct: 291 AVLFAPLLAGSLADWYRNIPGPDNLPPLMKLLPIQIHETSWLYQVVVQLTQCIHRIFPFA 350

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF- 176
                                     + +      A+   ++     +        L + 
Sbjct: 351 RGLFEDKVANVWCAIHTFYKLNKFDPSILKLAALGATLITIMPSCLIIGRYPRTHLLPYA 410

Query: 177 -----FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                +     S      S+   L P      S          ++G+  +     +    
Sbjct: 411 LASTGWGFFLCSFQVHEKSVLLPLLPMTLLLGSSGGLSKEIRAWVGLANMLGVWTMFPLL 470

Query: 232 AYWLAGVPSHVALGVITAIMAMIPGGAPIS---FTAVSIYLLIKGNIFNATCLFLWGAIE 288
                 +P  V   +   ++ + P    +      A +   L           +      
Sbjct: 471 KRDELRIPYTVLTLLWAYLLGLPPISLDLYRSRSPAQNSVELFTKTKLIHISYYAAMLGW 530

Query: 289 LFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
             +      P         P L      + G    G++
Sbjct: 531 HLLESNVSPPPTK------PDLWVVLNALIGASGFGII 562


>gi|255010290|ref|ZP_05282416.1| hypothetical protein Bfra3_14212 [Bacteroides fragilis 3_1_12]
 gi|313148088|ref|ZP_07810281.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136855|gb|EFR54215.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1120

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 24/254 (9%), Positives = 63/254 (24%), Gaps = 31/254 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     + V     +   +      +      + L  K +   ++  
Sbjct: 53  GAPFFMLTANLFTQFVNDPALVAKMVNYMSALMSGACILFLFWSITHLVRKLVITDENAI 112

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                      I  +                    +   ++ +     +I   L    E 
Sbjct: 113 TR------GQLITVMGSGLVGALAYTFSDTFWFSAVEGEVYAYSSMFTAIVFWLILKWED 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+   VP+    G + A+   +
Sbjct: 167 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKVPNANGKGSLLALAGSM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF---LP 311
              A + +  V   +   G  F    +                       + +PF   + 
Sbjct: 227 VLVAAVLYGIVPGVV-KVGGWFELLFV---------------------NSLGMPFNTGVI 264

Query: 312 TFFGLVGGVRTMGL 325
            +  L+      G+
Sbjct: 265 VYIALLAAAIIWGI 278


>gi|311739632|ref|ZP_07713467.1| PTS family porter, fructose-specific IIC component [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305448|gb|EFQ81516.1| PTS family porter, fructose-specific IIC component [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 705

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 5/112 (4%)

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWG 285
            ++        G       G I   +A  PG AP         +L  G I       L G
Sbjct: 405 AVLFAVGQAAMGFIVAALSGYIAFALAGRPGIAPGFAGGAIAVILGAGFIGGLVTGLLAG 464

Query: 286 AIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMAL 337
            I    +     P  +G  + +  +P    L+ G+       L +G  L A+
Sbjct: 465 FIA-MWIGNWKVPRWLGSLMPVVIIPLLTSLIVGLAMY----LLLGAPLAAI 511


>gi|298385706|ref|ZP_06995264.1| membrane protein [Bacteroides sp. 1_1_14]
 gi|298261847|gb|EFI04713.1| membrane protein [Bacteroides sp. 1_1_14]
          Length = 1041

 Score = 36.9 bits (84), Expect = 5.4,   Method: Composition-based stats.
 Identities = 19/252 (7%), Positives = 56/252 (22%), Gaps = 27/252 (10%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     S+V         +      +      + L    L   +   
Sbjct: 52  GAPFYMLVGNLFTQFASDPSQVSRTVNFLNALLSAGCILFLFWSITRLVRYLLKEEKENL 111

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
            +++  +       +    +        +      +     F     F +  +     + 
Sbjct: 112 SVTDVIII--LGSGLVGALAYTFSDTFWFSAVEGEVYAFSSFLTALVFWMILRWQDESDT 169

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIA-IGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
           ++   W  +   +  +     L   +       +     Y    +   +A   ++ ++ +
Sbjct: 170 VYGDRWIILIAYIIGLSIGVHLLNLLCIPAIVLVFYYQKYQTISLKGAIAAIALSGLLIV 229

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTF 313
           +     I        +   G  F    +   G                        L  F
Sbjct: 230 LILFVYIPG------MADIGGWFELLFVNALGFPFQT------------------GLIVF 265

Query: 314 FGLVGGVRTMGL 325
             +   +   G+
Sbjct: 266 LAITLFLLIAGI 277


>gi|167766990|ref|ZP_02439043.1| hypothetical protein CLOSS21_01507 [Clostridium sp. SS2/1]
 gi|167710965|gb|EDS21544.1| hypothetical protein CLOSS21_01507 [Clostridium sp. SS2/1]
          Length = 2237

 Score = 36.9 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 23/271 (8%), Positives = 78/271 (28%), Gaps = 24/271 (8%)

Query: 9    QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATV 68
            + ++    +F I+ +   +     P++ +L + FT +                 A+++  
Sbjct: 959  KSLVTIASVFAIIGAASTILSPLIPIILSLAVAFTLFG---------------AAILSIG 1003

Query: 69   SVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLS 128
            + + L  V L  +            S           +      +           + + 
Sbjct: 1004 AGLTLMGVGLTTISAGITALALSAASGATSIVASLTIIITGFISLIP--TIIAKMAEGIV 1061

Query: 129  HPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDG-FSISQQ 187
                +   S + + T  +  +                S++ + + +     +    +   
Sbjct: 1062 SFVQVISESASKIATALMKVLAETLKSLSTYGPVIVDSLLSLFVKIIDSVAEHVPELIVA 1121

Query: 188  LDSLGEHLFPAYWKKI----SRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVA 243
             ++L   +F      +    S  + KV+ +  +   ++     +       + G+     
Sbjct: 1122 FNNLFRSIFDGVINSLKNVNSDSLLKVVSAVGIMTVLMKALSTVTSVLPSAMVGL--AGI 1179

Query: 244  LGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
                T +  ++     ++      +L+ +G 
Sbjct: 1180 GVAFTELSGILALLGGLAQIPGLKWLIGEGG 1210


>gi|313575386|emb|CBR26915.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
          Length = 952

 Score = 36.9 bits (84), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 60/241 (24%), Gaps = 15/241 (6%)

Query: 17  MFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIV 76
           + II   +  + G   PV   L +   +              +T + +I     +   IV
Sbjct: 501 VVIIFTGILAVIGMLLPVFLGLQVAAAA------------MGTTVVGMITAFLPIVGIIV 548

Query: 77  PLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWL-SDIPGGMWASELWTKHLSHPQSLKI 135
            ++      ++ +KEL +           +   + + +   +     +   +    +   
Sbjct: 549 GIVAAITLLIVGLKELWTNHEGFRTTVTEIWNSIYAFLSMIIQQISSFVMSIWGTLTTWW 608

Query: 136 LSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALF--FFYRDGFSISQQLDSLGE 193
                L  N    +    +      +     +I                 I   +++   
Sbjct: 609 TENQQLILNAATTVWNAITTVIQTVMTILGPLIQASWENIKLIITAAWEMIKIVVETAIN 668

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAM 253
            +       +  I      +      ++++    +           +       T I   
Sbjct: 669 VVLGIIKAVMQVITGDWTGAWETIKQVLSMAWEGIKSLISLALNFITQYISTAWTGIKNT 728

Query: 254 I 254
           I
Sbjct: 729 I 729


>gi|331661846|ref|ZP_08362769.1| potassium efflux system KefA (Protein aefA) [Escherichia coli
           TA143]
 gi|331681859|ref|ZP_08382492.1| potassium efflux system KefA (Protein aefA) [Escherichia coli H299]
 gi|331060268|gb|EGI32232.1| potassium efflux system KefA (Protein aefA) [Escherichia coli
           TA143]
 gi|331081061|gb|EGI52226.1| potassium efflux system KefA (Protein aefA) [Escherichia coli H299]
          Length = 1096

 Score = 36.5 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 645 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 699

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 700 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 759

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 760 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 819

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 820 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 879

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 880 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 916


>gi|317033376|ref|XP_001395543.2| hypothetical protein ANI_1_602104 [Aspergillus niger CBS 513.88]
          Length = 1179

 Score = 36.5 bits (83), Expect = 5.9,   Method: Composition-based stats.
 Identities = 25/280 (8%), Positives = 67/280 (23%), Gaps = 10/280 (3%)

Query: 21  LVSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
              +  ++G    +  A+++     P+        +  S+     +   +    F+   L
Sbjct: 681 GWFISAIQGVLPALFLAILMAIL--PLILRFLSRTQGLSTGMAVELTVQNYYFAFLFVQL 738

Query: 80  FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
           FL          ++S V         +           + S +  + +S      +    
Sbjct: 739 FLVVTISSSFSTIISNVTD-VTSWPELLAQNIPSSSNYFFSYMILQAMSVSAGALVQIVN 797

Query: 140 FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
            +    +  I    +R           + +      +       +   + +    +F   
Sbjct: 798 LVSWFILAPILDKTARKKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVIAPLILIFNVI 857

Query: 200 WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AM 253
              +   V +              G            G+       +    +       +
Sbjct: 858 TFSLFWFVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMELSLIGLFFLVRDTQGEV 917

Query: 254 IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
              G  I    V I       + N     L+  + + + D
Sbjct: 918 ACEGQAIIMIIVLILTAGYQILLNDAFGPLFRYLPITLED 957


>gi|237730448|ref|ZP_04560929.1| potassium efflux protein KefA [Citrobacter sp. 30_2]
 gi|226905987|gb|EEH91905.1| potassium efflux protein KefA [Citrobacter sp. 30_2]
          Length = 1121

 Score = 36.5 bits (83), Expect = 6.0,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHGLRLVTITVLSIIPIALMVLTATGYFYTTLRLAG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVILWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPQEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   + +    +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLVMVALFGVLFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKDVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +   I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLKMRQGASYAITTILNYAIIAIGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|284051297|ref|ZP_06381507.1| hypothetical protein AplaP_07467 [Arthrospira platensis str.
           Paraca]
 gi|291568354|dbj|BAI90626.1| hypothetical membrane protein [Arthrospira platensis NIES-39]
          Length = 227

 Score = 36.5 bits (83), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 64/223 (28%), Gaps = 10/223 (4%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVS 69
            I+  +   + L ++ ++      ++ A ++ F      +    K+       A    + 
Sbjct: 15  WILILIAGGLTLKTINYVGELVTILIVAALVAFILNAPVAKL--KRFIPRGVAAARVYLV 72

Query: 70  VMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSH 129
              + ++  L L    + + ++ ++K+    +                    ++  +L  
Sbjct: 73  AATVVVLVGLTLLPPVLNQTRQFITKLPELAESAQQQLALFQSW--------IYEHNLPF 124

Query: 130 PQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLD 189
              +               I   +    +   ++ + +I ++   F+   DG  +   L 
Sbjct: 125 DVGILQQQLLNQIQGQAQAITSKSLGLVLGNFNWLIDLILILFLSFYMLLDGDRLWSTLT 184

Query: 190 SLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSA 232
            +          +      ++  S  L + +        +   
Sbjct: 185 IIISPKIRLVLTESLPRNLQIFLSGQLILGLFIAFTLAPMFFF 227


>gi|152969019|ref|YP_001334128.1| potassium efflux protein KefA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893434|ref|YP_002918168.1| potassium efflux protein KefA [Klebsiella pneumoniae NTUH-K2044]
 gi|150953868|gb|ABR75898.1| component of the MscS mechanosensitive channel [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|238545750|dbj|BAH62101.1| putative small-conductance mechanosensitive channel [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1115

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 71/283 (25%), Gaps = 16/283 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
                + L+I    WP+     S +++ S  L ++    +  + +  ++           
Sbjct: 656 LVIFFNLLLIAVLVWPMCR--ESWRDKESHSLRLLTITVLSIVPVALMVLTATGYFYTTL 713

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  + +      +        +  G+  +             + L +   +       P
Sbjct: 714 RLAGRWIETVYLVMIWNLLYQTVLRGLSVAARRIAWRRALARRQHLVKEGAEGAEPQEEP 773

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A             ++ + +    F+     +      L       +    +     V
Sbjct: 774 TIALEQVNQQTLRITMLVMVALFAVMFWAIWSDLITVFAYL--DSITLWHYNGTEAGASV 831

Query: 211 IRSTFLGMTIIAIGE------------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +RS  +G  + AI              GL+         +    +  + T +   I    
Sbjct: 832 VRSVTMGSLLFAIVASMVAWALIRNLPGLLEVLVLSRLNMRQGTSYAITTILNYAIIAIG 891

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            ++          K     A      G     I    +   ++
Sbjct: 892 AMTVFGALGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 934


>gi|262041595|ref|ZP_06014791.1| potassium efflux system KefA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041068|gb|EEW42143.1| potassium efflux system KefA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1115

 Score = 36.5 bits (83), Expect = 6.5,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 71/283 (25%), Gaps = 16/283 (5%)

Query: 31  FAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMK 90
                + L+I    WP+     S +++ S  L ++    +  + +  ++           
Sbjct: 656 LVIFFNLLLIAVLVWPMCR--ESWRDKESHSLRLLTITVLSIVPVALMVLTATGYFYTTL 713

Query: 91  ELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIP 150
            L  + +      +        +  G+  +             + L +   +       P
Sbjct: 714 RLAGRWIETVYLVMIWNLLYQTVLRGLSVAARRIAWRRALARRQHLVKEGAEGAEPQEEP 773

Query: 151 RFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKV 210
             A             ++ + +    F+     +      L       +    +     V
Sbjct: 774 TIALEQVNQQTLRITMLVMVALFAVMFWAIWSDLITVFAYL--DSITLWHYNGTEAGASV 831

Query: 211 IRSTFLGMTIIAIGE------------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
           +RS  +G  + AI              GL+         +    +  + T +   I    
Sbjct: 832 VRSVTMGSLLFAIVASMVAWALIRNLPGLLEVLVLSRLNMRQGTSYAITTILNYAIIAIG 891

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
            ++          K     A      G     I    +   ++
Sbjct: 892 AMTVFGALGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 934


>gi|304384120|ref|ZP_07366573.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
 gi|304334747|gb|EFM01024.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
          Length = 1107

 Score = 36.5 bits (83), Expect = 6.6,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 75/281 (26%), Gaps = 17/281 (6%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L    + +     S+V         +      +      + L  K +    S  
Sbjct: 53  GAPFFMLTANLLSQFVSDPSQVARMVNTMSALLSASCIMFLFWTITHLTRKLILKDWSEL 112

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                 +   G   +      F   F    +       +        + I +  D   E 
Sbjct: 113 T-LGKLIAIEGSGMVGALIYTFSDTFWFSAVEGEVYAYSSALTAVVFWLILKWEDHADEP 171

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
               +   I+ I    I    L +  I     +     Y  A +   +    ++ ++  +
Sbjct: 172 HSDRWLVLITYITGLSIGVHLLNLLCIPAIVLVYYYRRYPDANLKGSLMALGVSFVLIGV 231

Query: 255 PGGAPISFT-----AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF 309
                I           ++ +    +   T + ++  I + IV   +             
Sbjct: 232 VLYGVIPGIVTVGGWFELFFVNTLGMPFNTGVIVYLFILVGIVIWAIW----ESYTDKNP 287

Query: 310 ----LPTFFGL-VGGVRT--MGLLGLFIGPVLMALIAVIWK 343
               +     + + G+     G+  + IG ++++ +  + K
Sbjct: 288 KRGNVAFLLSVGLLGIPFYGFGISAVIIGAIVLSALYFLLK 328


>gi|261345769|ref|ZP_05973413.1| potassium efflux system KefA [Providencia rustigianii DSM 4541]
 gi|282566257|gb|EFB71792.1| potassium efflux system KefA [Providencia rustigianii DSM 4541]
          Length = 1128

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 71/266 (26%), Gaps = 14/266 (5%)

Query: 56  EESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPG 115
             + + L  + T S + L  + +   +Y  +      +  + L     I     L  +  
Sbjct: 698 HLTRSILITLLTFSPLILIGLMIAGYYYTTLRLANRWLDSLYLLVLWYITYNACLRGLSL 757

Query: 116 GMWASEL---WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
           G           +     Q              I+ I + + R   + L    ++ F  I
Sbjct: 758 GARKLAYKRALERRAMLKQEETENEPIKEPPMTIELISQQSLRLTTMVLFIIFALGFYAI 817

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI---GEGLVL 229
              F     F  S +L S G              +  +I +  + +    +     GL+ 
Sbjct: 818 WSDFITIFSFLDSVELWSYGTTSAEGTNVVRFVTLANLILAVVIIVVAWIMTRNLPGLLE 877

Query: 230 GSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                   +       + T +  +I     IS   +      +     A      G    
Sbjct: 878 VLVLSRLKLRQGSTYAITTILTYIIVSIGAISSLGMIGVTWNQLQWLAAALTVGLGFGLQ 937

Query: 290 FIVDKTL--------RPFLVGGPIKL 307
            I    +        RP  +G  + +
Sbjct: 938 EIFANFVSGIILLFERPIRIGDTVTI 963


>gi|170747694|ref|YP_001753954.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170654216|gb|ACB23271.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 839

 Score = 36.5 bits (83), Expect = 6.7,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 77/298 (25%), Gaps = 15/298 (5%)

Query: 36  SALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY--GMLEMKELV 93
           ++  + F + PI  +      +     A +    ++       + L         +  ++
Sbjct: 61  ASFGLAFVARPIGGAVFGHFGDRVGRKATLVASLLLMGLSTSAIGLLPTFALAGWLAPVL 120

Query: 94  SKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFA 153
             ++   Q       W       +  +    +      +       F   NG+  +    
Sbjct: 121 LCLLRFGQGLALGGEWSGAALLALENAPPGWRARYAMFAPLGAPLGFFVANGLFLVLTLT 180

Query: 154 SRF-----GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVP 208
                       + + LS+  + + L+     G +      +               ++ 
Sbjct: 181 LSAEQFADWGWRVPFLLSVPLVWLGLWVRTNLGETEEF---TAAVKDAQPPRVPFVALMR 237

Query: 209 KVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIY 268
                   GM  +     L   +  +  G  +        + +  +  GA +   A  + 
Sbjct: 238 HHAGQVVAGMFGVVACFSLFWTATAFALGYGTTTLGYSRASFLT-VELGAILFMAAAIVV 296

Query: 269 LLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                +  +   + + G          L P L  G +       F  L   +  MG +
Sbjct: 297 ASWLSDRLDPARVLIVGCAGTIASGILLAPMLGSGSL----ATIFVFLAFALWVMGFV 350


>gi|160931338|ref|ZP_02078737.1| hypothetical protein CLOLEP_00174 [Clostridium leptum DSM 753]
 gi|156869658|gb|EDO63030.1| hypothetical protein CLOLEP_00174 [Clostridium leptum DSM 753]
          Length = 780

 Score = 36.5 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 18/183 (9%), Positives = 47/183 (25%), Gaps = 7/183 (3%)

Query: 15  MIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIA--TVSVMC 72
            I  I+ + L  +     P+L   +I     P+                 +    +S++ 
Sbjct: 467 FIGQILGLGLQLISEALTPILD--LIAQLLEPLMQLLDGILGPLMGLFQSLMEPLLSLIQ 524

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGG--MWASELWTKHLSHP 130
             + PLL L    +  +  LV  ++   Q        + +          +++++     
Sbjct: 525 AALEPLLGLISALIEPLMSLVQAILPPIQELFSALTPILETLFSALEPLFDIFSQIAGLI 584

Query: 131 QSLKILSETFLKTNGIDFIPRFASRFGMIFLDYC-LSIIFMIIALFFFYRDGFSISQQLD 189
             +       L       +         I      +    +      F  +       + 
Sbjct: 585 GDVLGPVIETLAGIFSKVLGGAIEAIMPIIEGVMDVFGGLIDFITGVFSGNWEQAWNGIV 644

Query: 190 SLG 192
            + 
Sbjct: 645 DMF 647


>gi|331656522|ref|ZP_08357484.1| potassium efflux system KefA (Protein aefA) [Escherichia coli
           TA206]
 gi|331054770|gb|EGI26779.1| potassium efflux system KefA (Protein aefA) [Escherichia coli
           TA206]
          Length = 1120

 Score = 36.5 bits (83), Expect = 6.8,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 73/277 (26%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNATEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|325956869|ref|YP_004292281.1| ABC transporter ATP-binding protein/permease [Lactobacillus
           acidophilus 30SC]
 gi|325333434|gb|ADZ07342.1| ABC transporter ATP binding and permease protein [Lactobacillus
           acidophilus 30SC]
          Length = 527

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 75/262 (28%), Gaps = 6/262 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L+ L     P   A+   + +  + +  +++       +A++  + ++      L FL
Sbjct: 14  FALFVLGSIVVP-AIAIFSTYLTQTLTNVILARNWHEFILIAIVCFIIMLI-----LYFL 67

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                     L   +    +  I    +       +   +    +     +    +  F 
Sbjct: 68  LPIVQNLDNYLQQDLNQQVRAKIVKHYYDDQKQHTVADMQNRLTNDLTLINENYFTNLFG 127

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G   I        ++     + I  M+       +      Q+ + +      AY  
Sbjct: 128 VIYGTVLIISVVIYLILLSWQLLIVICIMVAVSLLLPKLTEKPLQKANQMISDSNQAYLD 187

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++  +  + +                       A V     + ++ A+  ++     + 
Sbjct: 188 TLNDWLSGLEQIRQFMAGAKLFSVTANASKKLEYANVKQTGYIKLLEAVNGIVSALFGLI 247

Query: 262 FTAVSIYLLIKGNIFNATCLFL 283
              ++  L+ +G+I     + +
Sbjct: 248 LFILAGVLVKQGSITIGALMIV 269


>gi|323958658|gb|EGB54361.1| mechanosensitive ion channel protein [Escherichia coli H263]
          Length = 1118

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 73/277 (26%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNATEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|295085917|emb|CBK67440.1| Protein of unknown function (DUF2723). [Bacteroides xylanisolvens
           XB1A]
          Length = 1137

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 85/298 (28%), Gaps = 37/298 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +    V+ V     +   +      +      + L  K       + 
Sbjct: 53  GAPFFMLVANLFSQFASDVTTVAKMVNYMSALMSGACILFLFWSITHLVRKL------VI 106

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +        +           +   ++ F     ++   L    E 
Sbjct: 107 TDENNITKGQLITVMGSGLIGALVYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+    P+  A G + A++  +
Sbjct: 167 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKTPNATAKGSLIALLGSM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGA-----IELFIVDKTLRPFLV-------- 301
              A + +  V   +   G  F    +   G      + ++I+   L   L+        
Sbjct: 227 VLVAAVLYGIVPGIV-KVGGWFELLFVNGLGMSFNSGVVVYII--LLAAALIWGVYESYT 283

Query: 302 ---GGPIKLPFLPTFF------------GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + + F+ T               ++ G+  +  LGL++ P + A I   W+ 
Sbjct: 284 EKNKARMAISFILTIALLGIPFYGHGASSIIIGILVIAALGLYLAPNVQAKIKERWRI 341


>gi|162449899|ref|YP_001612266.1| RND family efflux transporter [Sorangium cellulosum 'So ce 56']
 gi|161160481|emb|CAN91786.1| RND family efflux transporter [Sorangium cellulosum 'So ce 56']
          Length = 1075

 Score = 36.5 bits (83), Expect = 6.9,   Method: Composition-based stats.
 Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 10/140 (7%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            +  +K F   +L +L+  +    + + F S             T+ +     VP  F+ 
Sbjct: 848 LIKMMKSFLVALLLSLVFMYLV--LAAQFESWLHP--------ITILLSLPLTVPFAFIA 897

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
                +   + S + +    G+     +  I   +   E                   + 
Sbjct: 898 VIIFRQSLNIFSLLGIVVLFGVVKKNSILQIDHTIKLREHGLPRAQAILEANRDRLRPIL 957

Query: 143 TNGIDFIPRFASRFGMIFLD 162
              + F+             
Sbjct: 958 MTTLAFVAGMIPLVVSSGAG 977


>gi|157872914|ref|XP_001684980.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68128050|emb|CAJ06907.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 857

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 29/334 (8%), Positives = 87/334 (26%), Gaps = 22/334 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEES----STFLAV 64
              +  ++   +               +ALI        ++             +  L  
Sbjct: 132 NWFVDIVVDTFLSAPFRVYLTILLYCAAALIGALGLNYTFALLYRLYAPPIPNTNKSLQS 191

Query: 65  IATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWT 124
            A   +       ++      M  ++ L +             R+ S          +  
Sbjct: 192 FAYFVLFFYVSFVIVAALCALMDMVRNLWTLKRGDVVFWGMSHRYFSKRMPPFLVYLVII 251

Query: 125 KHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSI 184
             +     L  + ET ++   + ++ +  +   ++   + + + ++            +I
Sbjct: 252 LLVVFLPLLWGIVETGIRKQSLVYVAQRYANVAVLAATFVVVVCYLWFYWRALVYKWSAI 311

Query: 185 SQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEG--------LVLGSAYWLA 236
            ++++     L    +K     + KV       +      +G        +       L 
Sbjct: 312 KKRVERDDFELRRRAYKTHPEKMNKVHWYHASTVLEEFGMDGETLRYNSVVFTVGCVPLF 371

Query: 237 GVPSHVALGVITAIMAM----IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIV 292
            + +   L   T   ++    I   +      +S   L++     A        + +  +
Sbjct: 372 SLYAAQTLSTYTGTPSVAWPAIASISIACVYILSWITLMRRKHQWAIYASWALIVLMLAL 431

Query: 293 DKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLL 326
                  L GG +          ++      G++
Sbjct: 432 G------LTGGAVGGHPTTAAIVVLFFFAAHGMV 459


>gi|326793059|ref|YP_004310880.1| Xenobiotic-transporting ATPase [Clostridium lentocellum DSM 5427]
 gi|326543823|gb|ADZ85682.1| Xenobiotic-transporting ATPase [Clostridium lentocellum DSM 5427]
          Length = 597

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 27/289 (9%), Positives = 74/289 (25%), Gaps = 27/289 (9%)

Query: 26  FLKGFFAPVLSALII---GFTSWPIYSS-------------------FISKKEESSTFLA 63
           FLK +  P L A++          I                        +        + 
Sbjct: 14  FLKPYLIPFLGAILFIIGAAVINAITPRTEGLIITQLTEDVLAISKGLENAGIHFDYIIK 73

Query: 64  VIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELW 123
           V+  + V+ +      ++  + +    +  + V           R L        +    
Sbjct: 74  VLILLGVLYVLSTLFTYVASFLLTNAIQ--NTVRDLRNAVQNKIRKLPINYFDQNSFGEV 131

Query: 124 TKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFS 183
              +++       +     +  I+ +       GM+++      +   + +   Y     
Sbjct: 132 LSRITNDIDTISNAMQQSFSQIINSVLSLTLALGMMYVVNIQMALVATLIVPLSYLVSKF 191

Query: 184 ISQQLDSLGEHL---FPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPS 240
           I  +   L  +           +  +          G    AI E + +       G  +
Sbjct: 192 IVGKSQQLFYNQQQALGKLNGAVQEMYTGFNELKLYGKQEDAIEEFVGINEELCQEGFKA 251

Query: 241 HVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIEL 289
                +++ +++++          +   L I+G +           I  
Sbjct: 252 QFISSIMSPLVSLVSYLGIAVIGVMGGILTIRGALTVGNLQAFIRYIWQ 300


>gi|158290094|ref|XP_311695.3| AGAP003409-PA [Anopheles gambiae str. PEST]
 gi|157018291|gb|EAA07404.3| AGAP003409-PA [Anopheles gambiae str. PEST]
          Length = 786

 Score = 36.5 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 68/246 (27%), Gaps = 12/246 (4%)

Query: 79  LFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSE 138
             +      +       + +        P   + + G + ++      ++    + + + 
Sbjct: 519 GLVGPRVPAQA------IRMTIDEIFINPITKAGLIGFIKSNFGMLWEVADSLWMLLRTN 572

Query: 139 TFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPA 198
             L  + +  +       G   L +    I     LF+  +              + +  
Sbjct: 573 LTLLLSAVGTLVSAILGGGHAVLKFLFHTIIFFTTLFYLLQSSQDRYAPTAITINNSWGP 632

Query: 199 YWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGA 258
               I + +   I S  +    +A+  GL     + + G        V+ +I+A  P   
Sbjct: 633 R---IIQALEDSISSVVVATLKLALFHGLFTWLTHTVFGAHIVYLPAVLASILAAAPFLE 689

Query: 259 PISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGG-PIKLPFLPTFFGLV 317
               +A +   L          + L   +  FIV     P +            T   + 
Sbjct: 690 TYWCSAPAFLDLWLSQDRFWLGVTLV--LIHFIVPSNFNPIIHSEIKGGGHPYLTGLSIA 747

Query: 318 GGVRTM 323
           GG+   
Sbjct: 748 GGMYLF 753


>gi|320197058|gb|EFW71677.1| Potassium efflux system KefA protein / Small-conductance
           mechanosensitive channel [Escherichia coli WV_060327]
          Length = 1118

 Score = 36.5 bits (83), Expect = 7.1,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 73/277 (26%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNATEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|332098665|gb|EGJ03631.1| potassium efflux system kefA [Shigella boydii 3594-74]
          Length = 1118

 Score = 36.5 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   +DS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYIDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|50365435|ref|YP_053860.1| unknown substrate PTS system IIABC component [Mesoplasma florum L1]
 gi|50363991|gb|AAT75976.1| unknown substrate PTS system IIABC component [Mesoplasma florum L1]
          Length = 874

 Score = 36.5 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 72/289 (24%), Gaps = 33/289 (11%)

Query: 63  AVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASEL 122
           A I   ++  L    ++      ++++  +   V+ A   G  V   L D   G     +
Sbjct: 282 ASIMVKTIPVLVGCAIVQAIVGILVQINVMPDIVITAQASGNQVL--LKDAAIGWIILFI 339

Query: 123 WTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGF 182
             K  +   ++ I   T         I    +      L +       +   +     G 
Sbjct: 340 MAKTTTVFGTIAIAISTAQYFKFDVIIAASIALILSTPLMFLDGGSGGMGHEWIVIDFGD 399

Query: 183 SISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHV 242
             +         L      KI+ +  K+       +    + + +       L  +    
Sbjct: 400 LNTGN-----PVLDGISKVKIAAMTNKMFVVIGATIAAKYLNDWIKTWIPISLELMFRPF 454

Query: 243 ALGVITAIMAMIPGGAPISFT--AVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFL 300
            L ++    +        +         +   G       +  +  I    V        
Sbjct: 455 LLVMVIVPTSFFILLPVWNVIETLAGTLMYWIGQAPLGIGVGFYIGIWQVAV-------- 506

Query: 301 VGGPIKLPFLPTFFGLV-------------GGVRTMGLLGLFIGPVLMA 336
                 +       G++              G+     +G  +G +L+ 
Sbjct: 507 ---IFGIHMGLIIVGILDSIQRGGAGIFMIMGISVWAQVGALVGVILVT 552


>gi|332142621|ref|YP_004428359.1| hypothetical protein MADE_1016155 [Alteromonas macleodii str.
          'Deep ecotype']
 gi|327552643|gb|AEA99361.1| hypothetical protein MADE_1016155 [Alteromonas macleodii str.
          'Deep ecotype']
          Length = 81

 Score = 36.5 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 6/41 (14%), Positives = 17/41 (41%)

Query: 8  PQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY 48
             ++  +++F  + ++Y  K    P+  +  I     P+ 
Sbjct: 25 QTKLLNTLVIFAFIYTMYLAKSLLIPLFFSAFIALLLSPLV 65


>gi|315299542|gb|EFU58790.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 16-3]
          Length = 1120

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 73/277 (26%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNATEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|323191131|gb|EFZ76395.1| potassium efflux system kefA [Escherichia coli RN587/1]
          Length = 1118

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 73/277 (26%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNATEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|307171848|gb|EFN63503.1| Rhomboid family member 1 [Camponotus floridanus]
          Length = 925

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 6/70 (8%), Positives = 22/70 (31%), Gaps = 7/70 (10%)

Query: 8   PQGIMRWMIMFIILVSLYFLKGF-----FAPVLSALIIGFTSWPIYSSFISKKEESSTFL 62
            + + + +++ + L+ L  L            +   +  +   P  S      +     L
Sbjct: 811 RRALSKLILILVGLLMLGILPWVDNYAHLFGFIFGFLAAYALMPFISF--GHYDRRRKIL 868

Query: 63  AVIATVSVMC 72
            +   + ++ 
Sbjct: 869 LIWVCLILIV 878


>gi|82542958|ref|YP_406905.1| potassium efflux protein KefA [Shigella boydii Sb227]
 gi|81244369|gb|ABB65077.1| putative alpha helix protein [Shigella boydii Sb227]
 gi|320184095|gb|EFW58914.1| Potassium efflux system KefA protein / Small-conductance
           mechanosensitive channel [Shigella flexneri CDC 796-83]
          Length = 1120

 Score = 36.5 bits (83), Expect = 7.3,   Method: Composition-based stats.
 Identities = 29/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   +DS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYIDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|307552371|gb|ADN45146.1| mechanosensitive channel protein KefA [Escherichia coli ABU 83972]
          Length = 1118

 Score = 36.1 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 73/277 (26%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNATEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|302507035|ref|XP_003015474.1| hypothetical protein ARB_06600 [Arthroderma benhamiae CBS 112371]
 gi|291179046|gb|EFE34834.1| hypothetical protein ARB_06600 [Arthroderma benhamiae CBS 112371]
          Length = 632

 Score = 36.1 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 26/265 (9%), Positives = 65/265 (24%), Gaps = 27/265 (10%)

Query: 12  MRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVM 71
           +   I F+  +    +  +FAPV+ A ++G    P       +   +      + T+   
Sbjct: 245 LWASIFFVAALGFKQMSLYFAPVVFAYLLGICFSP-------RIRPNRLLGIALITIVAF 297

Query: 72  CLFIVPLLFL--------------FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGM 117
            +   PLL                       +   + +     Q  + + + +  I    
Sbjct: 298 AVLFAPLLAGSLADWYRNIPGPDNLPPLTKSLPIQIHEASWLYQVVVQLTQCIHRIFPFA 357

Query: 118 WASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFF- 176
                                     + +      A+   ++     +        L + 
Sbjct: 358 RGLFEDKVANVWCAIHTFYKLNKFDPSILKLAALGATLITIMPSCLIIGRYPRTHLLPYA 417

Query: 177 -----FYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGS 231
                +     S      S+   L P      S          ++G+  +     +    
Sbjct: 418 LASTGWGFFLCSFQVHEKSVLLPLLPMTLLLGSAGGLSKEIRAWVGLANMLGVWTMFPLL 477

Query: 232 AYWLAGVPSHVALGVITAIMAMIPG 256
                 +P  V   +   ++ + P 
Sbjct: 478 KRDELRIPYTVLTLLWAYLLGLPPM 502


>gi|75762881|ref|ZP_00742693.1| Sensor protein vanS [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218898282|ref|YP_002446693.1| two-component sensor histidine kinase [Bacillus cereus G9842]
 gi|74489628|gb|EAO53032.1| Sensor protein vanS [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|218545471|gb|ACK97865.1| two-component sensor histidine kinase [Bacillus cereus G9842]
          Length = 358

 Score = 36.1 bits (82), Expect = 7.5,   Method: Composition-based stats.
 Identities = 17/164 (10%), Positives = 44/164 (26%), Gaps = 13/164 (7%)

Query: 1   MRETMLNPQGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESST 60
           M+      + I++ +    I   + F            I+ +   P++            
Sbjct: 1   MKNVSFRNKIIIKLLGAVAISFFISFGLTIL-------ILAYVIDPLFIKHEEFGMFEFN 53

Query: 61  FLAVIATVSVMCLFIVPLLFLF------YYGMLEMKELVSKVVLANQHGIPVPRWLSDIP 114
              +      +  FI+  L L          + +    ++   L    GI     L+ + 
Sbjct: 54  VAMLFLFAFAIFTFIILFLILVRKKIVYLKLISDNVNDIANGKLGLTIGIKGKDELTQLA 113

Query: 115 GGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGM 158
             +       ++    +     ++  L TN    +    +    
Sbjct: 114 KNINYMSKELENTFEQERRLERTKNELITNVSHDLRTPLTSIIG 157


>gi|315038452|ref|YP_004032020.1| ABC transporter ATP binding and permease protein [Lactobacillus
           amylovorus GRL 1112]
 gi|312276585|gb|ADQ59225.1| ABC transporter ATP binding and permease protein [Lactobacillus
           amylovorus GRL 1112]
          Length = 527

 Score = 36.1 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 75/262 (28%), Gaps = 6/262 (2%)

Query: 22  VSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFL 81
            +L+ L     P   A+   + +  + +  +++       +A++  + ++      L FL
Sbjct: 14  FALFVLGSIVVP-AIAIFSTYLTQTLTNVILARNWHEFILIAIVCFIIMLI-----LYFL 67

Query: 82  FYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFL 141
                     L   +    +  I    +       +   +    +     +    +  F 
Sbjct: 68  LPIVQNLDNYLQQDLNQQVRAKIVKHYYDDQKQHTVADMQNRLTNDLTLINENYFTNLFG 127

Query: 142 KTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWK 201
              G   I        ++     + I  M+       +      Q+ + +      AY  
Sbjct: 128 VIYGTVLIISVVIYLILLSWQLLIVICIMVAVSLLLPKLTEKPLQKANQMISDSNQAYLD 187

Query: 202 KISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPIS 261
            ++  +  + +                       A V     + ++ A+  ++     + 
Sbjct: 188 TLNDWLSGLEQIRQFMAGAKLFSVTANASKKLEYANVKQTGYIKLLEAVNGIVSALFGLI 247

Query: 262 FTAVSIYLLIKGNIFNATCLFL 283
              ++  L+ +G+I     + +
Sbjct: 248 LFILAGVLVKQGSITIGALMIV 269


>gi|171689106|ref|XP_001909493.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944515|emb|CAP70626.1| unnamed protein product [Podospora anserina S mat+]
          Length = 746

 Score = 36.1 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 83/280 (29%), Gaps = 7/280 (2%)

Query: 4   TMLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSA---LIIGFTSWPIYSSFISKKEESS 59
            +L    ++  ++  + L +L  F++     VL A   +++ F+ +P  SS+      S 
Sbjct: 320 HLLAVDTLVAIIVSMVWLAALRSFVRPLVILVLVAVPIILLSFSLYPFISSYQETGGSSR 379

Query: 60  TFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWA 119
                + + + +      +     +   E  +    ++  +   +     L  +  G  A
Sbjct: 380 FQDTAMRSAATIPGIWALIWVYMVWKGRESIQSAMSILDFSSRILTANSALILVGMGCLA 439

Query: 120 SELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYR 179
           + +           ++            FI   ++ +   +          II+      
Sbjct: 440 AVVLWTWTWLFMFTRVFLGGSFSNKLARFIISASTWWLGAYFILMYLWTLSIISAVQRST 499

Query: 180 DGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVP 239
              ++SQ                   +   +  +       I++   L L     L  +P
Sbjct: 500 TAATVSQW---YFHRNAVPAPSSRDVVSAALSHAMTTIFGTISLSTLLALAIRLPLLVLP 556

Query: 240 SHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
             +A  +   + + IP         +++      +   + 
Sbjct: 557 RRLAHILTMFVYSFIPTPIAALTNPLTLTYAAIHSQPLSI 596


>gi|183600064|ref|ZP_02961557.1| hypothetical protein PROSTU_03596 [Providencia stuartii ATCC 25827]
 gi|188022349|gb|EDU60389.1| hypothetical protein PROSTU_03596 [Providencia stuartii ATCC 25827]
          Length = 1149

 Score = 36.1 bits (82), Expect = 7.6,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 80/291 (27%), Gaps = 34/291 (11%)

Query: 42  FTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYY-----GMLEMKELVSKV 96
             + P       +K    T   VI  ++   L ++ L+   YY           + +  +
Sbjct: 704 IFTLPFCKHIWKEKGSHLTRSVVITILTFSPLVLIGLMMAGYYYTTLRLANRWLDSLYLL 763

Query: 97  VLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRF 156
           +L         R L+ +   +       +  +  Q              I+ I + + R 
Sbjct: 764 LLWYITYNACLRGLTLVARKLAYQRAIERRKAQNQEESENEPIKEPPMTIELISQQSLRL 823

Query: 157 GMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFL 216
             + L    ++ F  I   F           + S  + +   ++   +      ++S  L
Sbjct: 824 TTMVLFIIFALGFYAIWSDFIT---------IFSFLDSVDLWHYTATTAEGSNTLQSVTL 874

Query: 217 GMTIIAIGEGLVLGSAYWLA------------GVPSHVALGVITAIMAMIPGGAPISFTA 264
              ++A+   +V                     +       + T +  +I G   I+   
Sbjct: 875 ANLLLAMVIIVVAWIMTRNLPGLLEVLVLSRLKLRQGSTYAITTILTYIIVGIGAITSLG 934

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTL--------RPFLVGGPIKL 307
           +      K     A      G     I    +        RP  +G  + +
Sbjct: 935 MLGITWSKLQWLAAALTVGLGFGLQEIFANFVSGIILLFERPIRIGDTVTI 985


>gi|309805779|ref|ZP_07699816.1| ABC transporter, ATP-binding protein [Lactobacillus iners LactinV
           09V1-c]
 gi|308164899|gb|EFO67145.1| ABC transporter, ATP-binding protein [Lactobacillus iners LactinV
           09V1-c]
          Length = 525

 Score = 36.1 bits (82), Expect = 7.8,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 81/290 (27%), Gaps = 20/290 (6%)

Query: 13  RWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMC 72
           R++ +F+IL     L+        A  I   S  + +              +   V V  
Sbjct: 9   RYIFIFVILSFFKSLQ--------AAFIAVVSQQMVNW-----VNKPKLSYLFTIVVVAL 55

Query: 73  LFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQS 132
           + ++    +  +       +V K+    +  +      S+ P     +  +T  L   ++
Sbjct: 56  VGLIVFWLVSIFYQKIYFMVVRKINCNIKAIVSKYLIFSNNPSVELDTSFFTNDLKTIET 115

Query: 133 LKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLG 192
            KI +E  + TN I FI    +          + ++   +   F    G +I ++     
Sbjct: 116 DKIEAELQIITNVIQFIIAIIASIAGSLPLTIVFMLASFLPGIFQRILGRNIEEKSKEWD 175

Query: 193 EHLFPAY-WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM 251
           +         K +++     R       +    +         L  +             
Sbjct: 176 KSNSKYTENVKETKMFSASARLYNTENNLWKRFKSSANTMEAALLKLNF------WQGFT 229

Query: 252 AMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                    S   ++   L    +           +   + +  + P ++
Sbjct: 230 NETINTIAYSVITIAPIALGVYLVSIKNITLGTLIMVSQLSNNFVNPVII 279


>gi|281177635|dbj|BAI53965.1| putative channel protein [Escherichia coli SE15]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 73/277 (26%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    + A     + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNATEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|134080261|emb|CAK97164.1| unnamed protein product [Aspergillus niger]
          Length = 1296

 Score = 36.1 bits (82), Expect = 8.0,   Method: Composition-based stats.
 Identities = 25/280 (8%), Positives = 67/280 (23%), Gaps = 10/280 (3%)

Query: 21   LVSLYFLKGFFAPVLSALIIGFTSWPIY-SSFISKKEESSTFLAVIATVSVMCLFIVPLL 79
               +  ++G    +  A+++     P+        +  S+     +   +    F+   L
Sbjct: 798  GWFISAIQGVLPALFLAILMAIL--PLILRFLSRTQGLSTGMAVELTVQNYYFAFLFVQL 855

Query: 80   FLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSET 139
            FL          ++S V         +           + S +  + +S      +    
Sbjct: 856  FLVVTISSSFSTIISNVTD-VTSWPELLAQNIPSSSNYFFSYMILQAMSVSAGALVQIVN 914

Query: 140  FLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAY 199
             +    +  I    +R           + +      +       +   + +    +F   
Sbjct: 915  LVSWFILAPILDKTARKKWGRTTNLNQMQWGTFFPVYTTLASIGLIYCVIAPLILIFNVI 974

Query: 200  WKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIM------AM 253
               +   V +              G            G+       +    +       +
Sbjct: 975  TFSLFWFVYRYNTLYVTKFRFDTGGLLFPRAINQLFTGLYVMELSLIGLFFLVRDTQGEV 1034

Query: 254  IPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVD 293
               G  I    V I       + N     L+  + + + D
Sbjct: 1035 ACEGQAIIMIIVLILTAGYQILLNDAFGPLFRYLPITLED 1074


>gi|148554429|ref|YP_001262011.1| major facilitator transporter [Sphingomonas wittichii RW1]
 gi|148499619|gb|ABQ67873.1| major facilitator superfamily MFS_1 [Sphingomonas wittichii RW1]
          Length = 425

 Score = 36.1 bits (82), Expect = 8.1,   Method: Composition-based stats.
 Identities = 24/296 (8%), Positives = 67/296 (22%), Gaps = 7/296 (2%)

Query: 40  IGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLA 99
           + F S P+ +       +     + +    ++      L+            L + ++  
Sbjct: 62  LAFLSRPLGAWAFGHFGDRIGRKSTLVASLMVMGLSTLLIAFLPS-YETAGWLGAFLLAL 120

Query: 100 NQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMI 159
            + G             + A E           +       +     + +          
Sbjct: 121 LRFGQGFGLGGEWGGAALLAVENAPPGKRARYGMFPQLGAPVGFIAANGLFMLLGLAMTQ 180

Query: 160 FLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK-----ISRIVPKVIRST 214
                       +        G  +  +L             +     I+ +    +  T
Sbjct: 181 QQFMEWGWRLPFLGSAVLVGVGLWVRLKLTETAAFKAAMAEAEPAKVPIAELFRDHLVPT 240

Query: 215 FLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGN 274
             G             +  +  G  +          +  +   A +      +      +
Sbjct: 241 IAGTFAAIACFATYYLATAFALGYATSNLGIAKETFLG-VQLVAILFMAGGILLAGWWAD 299

Query: 275 IFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFI 330
           + +   + + G +        + P L+   + +  L     L       G LG F+
Sbjct: 300 MRSPRYVLIAGCVGTIATGLLMGPMLLSADLTIIALWLMLALFMMGFVYGPLGAFL 355


>gi|323178264|gb|EFZ63842.1| potassium efflux system kefA [Escherichia coli 1180]
          Length = 1118

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|320656084|gb|EFX24000.1| hypothetical protein ECO7815_11448 [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.2,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|260866625|ref|YP_003233027.1| mechanosensitive channel protein [Escherichia coli O111:H- str.
           11128]
 gi|257762981|dbj|BAI34476.1| mechanosensitive channel protein [Escherichia coli O111:H- str.
           11128]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.4,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|313646905|gb|EFS11362.1| potassium efflux system kefA [Shigella flexneri 2a str. 2457T]
 gi|323160424|gb|EFZ46372.1| potassium efflux system kefA [Escherichia coli E128010]
 gi|323164270|gb|EFZ50077.1| potassium efflux system kefA [Shigella sonnei 53G]
 gi|323170561|gb|EFZ56211.1| potassium efflux system kefA [Escherichia coli LT-68]
          Length = 1118

 Score = 36.1 bits (82), Expect = 8.5,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|309786048|ref|ZP_07680677.1| potassium efflux system kefA [Shigella dysenteriae 1617]
 gi|308926159|gb|EFP71637.1| potassium efflux system kefA [Shigella dysenteriae 1617]
          Length = 1118

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|293418535|ref|ZP_06660970.1| potassium efflux system protein KefA [Escherichia coli B088]
 gi|291325063|gb|EFE64478.1| potassium efflux system protein KefA [Escherichia coli B088]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|227432146|ref|ZP_03914153.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
 gi|227352094|gb|EEJ42313.1| permease [Leuconostoc mesenteroides subsp. cremoris ATCC 19254]
          Length = 228

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 61/246 (24%), Gaps = 20/246 (8%)

Query: 23  SLYFLKGFFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLF 82
            ++ LK F + +L  +I  + +  +        + S      +  +  + +  + +    
Sbjct: 1   LIFALKQFMSLLLLTIIFSYLAMSVAKPLAHFLKISRALSIALVYIIFISVVSLAIQHGA 60

Query: 83  YYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLK 142
              + ++K +++  +  N     + + +        +       +S   S        + 
Sbjct: 61  ATLIEQIKSMITLAMNWNGQDNALLQDVYKNVNQYTSMFNSKDLISESLSQLNHIGHVIY 120

Query: 143 TNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKK 202
              +  +  F        L               F                         
Sbjct: 121 QLVLALLFSFIFSMTYPKLRLWSMNFLHSPFKKIFGEFY--------------------I 160

Query: 203 ISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISF 262
           I      ++   F    II      ++         P  +   ++  ++ +IP    +  
Sbjct: 161 IVHRFIIILGKLFEIQLIICTINTALMFLVLLSLHFPYLLGFTILIFVLGLIPVFGVVIS 220

Query: 263 TAVSIY 268
                 
Sbjct: 221 LVPLTI 226


>gi|323965151|gb|EGB60610.1| mechanosensitive ion channel protein [Escherichia coli M863]
 gi|327254792|gb|EGE66408.1| potassium efflux system kefA [Escherichia coli STEC_7v]
          Length = 1118

 Score = 36.1 bits (82), Expect = 8.6,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITILSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|323184704|gb|EFZ70075.1| potassium efflux system kefA [Escherichia coli 1357]
 gi|324116953|gb|EGC10866.1| mechanosensitive ion channel protein [Escherichia coli E1167]
          Length = 1118

 Score = 36.1 bits (82), Expect = 8.7,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|300935757|ref|ZP_07150722.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 21-1]
 gi|300459057|gb|EFK22550.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 21-1]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|293368646|ref|ZP_06615253.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
 gi|292636288|gb|EFF54773.1| putative membrane protein [Bacteroides ovatus SD CMC 3f]
          Length = 1139

 Score = 36.1 bits (82), Expect = 8.8,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 84/298 (28%), Gaps = 37/298 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +    V+ V     +   +      +      + L  K       + 
Sbjct: 55  GAPFFMLVANLFSQFASDVTTVAKMVNYMSALMSGACILFLFWSITHLVRKL------II 108

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  K   I  +        +           +   ++ F     ++   L    E 
Sbjct: 109 TDENNITKGQLITVMGSGLIGALVYTFSDTFWFSAVEGEVYAFSSLFTAVVFWLILKWED 168

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+    P+  A G + A+   +
Sbjct: 169 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKTPNATAKGSLIALFGSM 228

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGA-----IELFIVDKTLRPFLV-------- 301
              A + +  V   +   G  F    +   G      + ++I+   L   L+        
Sbjct: 229 VLVAAVLYGIVPGIV-KVGGWFELLFVNGLGMSFNSGVVVYII--LLAAALIWGVYESYT 285

Query: 302 ---GGPIKLPFLPTFF------------GLVGGVRTMGLLGLFIGPVLMALIAVIWKE 344
                 + + F+ T               ++ G+  +  LGL++ P + A I   W+ 
Sbjct: 286 EKNKARMAISFILTIALLGIPFYGHGASSIIIGILVIAALGLYLAPSVQAKIKERWRI 343


>gi|309794800|ref|ZP_07689221.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 145-7]
 gi|308121453|gb|EFO58715.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 145-7]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|307312158|ref|ZP_07591794.1| MscS Mechanosensitive ion channel [Escherichia coli W]
 gi|306907660|gb|EFN38162.1| MscS Mechanosensitive ion channel [Escherichia coli W]
 gi|315059744|gb|ADT74071.1| fused conserved protein [Escherichia coli W]
 gi|323379691|gb|ADX51959.1| MscS Mechanosensitive ion channel [Escherichia coli KO11]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|300820289|ref|ZP_07100441.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 119-7]
 gi|331676138|ref|ZP_08376850.1| potassium efflux system KefA (Protein aefA) [Escherichia coli H591]
 gi|300527074|gb|EFK48143.1| transporter, small conductance mechanosensitive ion channel family
           protein [Escherichia coli MS 119-7]
 gi|331076196|gb|EGI47478.1| potassium efflux system KefA (Protein aefA) [Escherichia coli H591]
          Length = 1120

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 669 LLIAFLVWPMC-----RESWRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSG 723

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 724 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 783

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 784 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 843

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 844 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 903

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 904 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 940


>gi|39951641|ref|XP_363537.1| hypothetical protein MGG_01463 [Magnaporthe oryzae 70-15]
 gi|145020699|gb|EDK04828.1| hypothetical protein MGG_01463 [Magnaporthe oryzae 70-15]
          Length = 893

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 38/319 (11%), Positives = 78/319 (24%), Gaps = 20/319 (6%)

Query: 9   QGIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFT--SWPIYSSFISKKEESSTFLAVIA 66
           Q ++R  ++   + +L     F  PVL   II          S            +  + 
Sbjct: 400 QRVVRRYLVLAFIAALIIFWAF--PVLVVGIITNIDKLKQDVSWLS-WLNYIPDAIMGVI 456

Query: 67  TVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKH 126
           T  +  + +  L+ L    M    +L  +   +         +       ++        
Sbjct: 457 TGLLPSVALAILMSLVPIIMRLCAKLSGEPSHSRCELFTQNAYFCFQIVQVFFVTTVGSA 516

Query: 127 LSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQ 186
            +                    +     + G  + +Y L     I A       GF I Q
Sbjct: 517 GTELGPQLQK-MALDPQLIPQTLADTLPKPGNFYNNYFLVQGLTIAASVLSQIVGFVIFQ 575

Query: 187 QLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGV 246
            +         A ++K + +      ST    T+I     +       + G         
Sbjct: 576 LMYRFLASTPRALYQKWATLSAISWGSTLPVYTMITCIAIIYAVITPLVLGF------AC 629

Query: 247 ITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT--CLFLWGAIELFIVDKTLRPFLVGGP 304
           +   +  I     + F   +           A           E+ ++       L G  
Sbjct: 630 LAMCLFYIAWRYNVLFVTDTKIDTRGLIYPRALKQLFVGVYVAEICMIG------LFGAS 683

Query: 305 IKLPFLPTFFGLVGGVRTM 323
             +        L+      
Sbjct: 684 TAIGPAVLMAALLLFTVLF 702


>gi|323976051|gb|EGB71144.1| mechanosensitive ion channel protein [Escherichia coli TW10509]
          Length = 1118

 Score = 36.1 bits (82), Expect = 8.9,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 72/277 (25%), Gaps = 18/277 (6%)

Query: 38  LIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVV 97
           L+I F  WP+      ++         +  V++  L I+P+  +           +    
Sbjct: 667 LLIAFLVWPMC-----RESWRDKESHTMRLVTITILSIIPIALMVLTATGYFYTTLRLSG 721

Query: 98  LANQHGIPVPRW------LSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPR 151
              +    V  W      +            W + L+  Q+L        +      I  
Sbjct: 722 RWIETVYLVIIWNLLYQTVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIAL 781

Query: 152 FASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVI 211
                  + +   L      +  +  + D  ++   LDS+    +       + +    +
Sbjct: 782 EQVNQQTLRITMLLMFALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTM 841

Query: 212 RSTFLGMTIIAIGE-------GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTA 264
            S    +    +         GL+         +    +  + T +  +I     ++   
Sbjct: 842 GSLLFAIIASMVAWALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFG 901

Query: 265 VSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLV 301
                  K     A      G     I    +   ++
Sbjct: 902 SLGVSWDKLQWLAAALSVGLGFGLQEIFGNFVSGLII 938


>gi|265764812|ref|ZP_06093087.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254196|gb|EEZ25630.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1119

 Score = 36.1 bits (82), Expect = 9.0,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 62/254 (24%), Gaps = 31/254 (12%)

Query: 75  IVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLK 134
             P   L      +     + V     +   +      +      + L  K       + 
Sbjct: 53  GAPFFMLTANLFTQFVSDPALVAKMVNYMSALMSGACILFLFWSITHLVRKL------VI 106

Query: 135 ILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEH 194
                  +   I  +                    +   ++ +     +I   L    E 
Sbjct: 107 TDETNITRGQLITVMGSGLVGALAYTFSDTFWFSAVEGEVYAYSSMFTAIVFWLILKWED 166

Query: 195 LFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAGVPSHVALGVITAIMAMI 254
           +          I+   +    +G+ ++ +     +   Y+   VP   A G + A+   +
Sbjct: 167 VADQPHSDRWIILIAYLTGLSIGVHLLNLLCLPAIVLVYYYKKVPGANAKGSLLALAGSM 226

Query: 255 PGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKTLRPFLVGGPIKLPF---LP 311
              A + +  V   +   G  F    +                       + +PF   + 
Sbjct: 227 ILVAAVLYGIVPGVV-KVGGWFELLFV---------------------NSLGMPFNTGVI 264

Query: 312 TFFGLVGGVRTMGL 325
            +  L+      G+
Sbjct: 265 VYVALLAAAIIWGI 278


>gi|242018574|ref|XP_002429749.1| transmembrane protein, putative [Pediculus humanus corporis]
 gi|212514761|gb|EEB17011.1| transmembrane protein, putative [Pediculus humanus corporis]
          Length = 185

 Score = 36.1 bits (82), Expect = 9.2,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 19/190 (10%)

Query: 164 CLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAI 223
                 +     F+  +      +   L  +L      K+       I   F+    +A+
Sbjct: 1   MFISTIVFFTALFYLLNSSGSRYKPVELLSNLSIINGSKLGSAFEAAINGVFMASFKMAL 60

Query: 224 GEGLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFL 283
             GL     +    V       V+ A++  +P       +  ++  L          + L
Sbjct: 61  FYGLWTWLIHNFFQVRIVYLPSVLAAVLGAVPFLGTYWASIPAVLDLWLAQQKGFQAIIL 120

Query: 284 WGAIELFIVDKTLRPFLVGGPIKLPFLPTFFGLVGGVRTMGLLGLFIGPVLMALIAVIWK 343
           +                     +     T   + GGV  MG+ G   GP+L+  + V   
Sbjct: 121 FLF-------------------QCHPYMTGLAIAGGVFCMGIQGAIFGPLLLCCLLVALN 161

Query: 344 ESIMAIKENK 353
            S   +KE+ 
Sbjct: 162 MSSNLLKESP 171


>gi|293556367|ref|ZP_06674948.1| ABC transporter, ATP-binding/permease protein, MDR family
           [Enterococcus faecium E1039]
 gi|291601434|gb|EFF31705.1| ABC transporter, ATP-binding/permease protein, MDR family
           [Enterococcus faecium E1039]
          Length = 594

 Score = 35.7 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 28/287 (9%), Positives = 65/287 (22%), Gaps = 11/287 (3%)

Query: 19  IILVSLYFLKGFFAPVLSALIIGFTSWPIYSSFISKK-----EESSTFLAVIATVSVMCL 73
           II   + F K F    + A++  F    I                +   A    +     
Sbjct: 21  IITRLMKFAKPFRRTFIVAILFAFALSVINVLLPRIIQTFMDHHLAKQSATTQVILFFAG 80

Query: 74  FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSL 133
             +  + +          L S   L     I V  +      GM   +      +  +  
Sbjct: 81  MYLFGVIVKSIIWFFQWYLYSMASLKTYQYIRVKLFEKLHTLGMRYFDQTPAGSTVSRVT 140

Query: 134 KILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGE 193
                 F        +          F+        + +    F      +         
Sbjct: 141 NDTETLFEFWYVFLMVLTGIFAVVSSFIAMFQINGEIALWTLVFLPILGIVIWYYQKFSS 200

Query: 194 HLFPAYWKKISRIVPKVIRSTFLGMTIIAIGEGL-----VLGSAYWLAGVPSHVALGVIT 248
            ++    +K+S++  K+  S      I    +                     +      
Sbjct: 201 RIYRNMREKLSQLNTKLNESISGMRIIQQFRQEARLAKEFEQVNNEYLDTRYAMMKTNSI 260

Query: 249 AIMAMIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIELFIVDKT 295
            +  +I     +    + + L     + +   + L  A   ++    
Sbjct: 261 LLSPIINFLYAL-AIVLVLTLFGIDALHSPIEVGLIYAFTTYVQGFF 306


>gi|242008257|ref|XP_002424923.1| sodium antiporter, putative [Pediculus humanus corporis]
 gi|212508537|gb|EEB12185.1| sodium antiporter, putative [Pediculus humanus corporis]
          Length = 670

 Score = 35.7 bits (81), Expect = 9.6,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 49/194 (25%), Gaps = 25/194 (12%)

Query: 166 SIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMTIIAIGE 225
                                    +  + F   ++  +R++  V+    L   I+    
Sbjct: 123 WWYIFCAKCRQKESSKSWEPTHWQKVCPYPFCPSYRHFARLLALVLVGFLL-WGIVYCIL 181

Query: 226 GLVLGSAYWLAGVPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT------ 279
           G        L G+        I    A +     +        L     + + +      
Sbjct: 182 GSTAAPGGQLFGLALLCICANIGGWFATVLTLPALVGMLAVGVLFQNVGLVHISEEYKEV 241

Query: 280 -----CLFLWGAIELFIVDKTLRPFLVGG------PIKLPFLPTFFGLVGGVR--TMG-- 324
                 + L   +    +D  L P  +         + L        ++  +    MG  
Sbjct: 242 CSILRKIALVIILIRAGLD--LDPKALKRLALSTIKLGLVPWIVECAIIATMTYFLMGLP 299

Query: 325 -LLGLFIGPVLMAL 337
            + G  +G ++ A+
Sbjct: 300 WIWGFLLGSIIAAV 313


>gi|322710680|gb|EFZ02254.1| ctl transporter, putative [Metarhizium anisopliae ARSEF 23]
          Length = 770

 Score = 35.7 bits (81), Expect = 9.7,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 90/282 (31%), Gaps = 13/282 (4%)

Query: 5   MLNPQGIMRWMIMFIILVSL-YFLKGFFAPVLSA---LIIGFTSWPIYSSFISKKEESST 60
           ML    ++   + FI L +L  F++   + +L A   +++ F+ +   SSF  +   SS 
Sbjct: 346 MLAVDTVVAIFVSFIWLAALRSFVRPLVSVILIAVPVIMLSFSLYSFISSFQGRTHGSSF 405

Query: 61  FLAVIATVSVMCLFIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSDIPGGMWAS 120
             +V+  VS++      L     + +++ +  + + +   Q    +    S +    +  
Sbjct: 406 QDSVMRWVSLVPAASCVLWL---WLVVKGRRAIQQAIEILQFSSKILAQNSGLLLIGFGC 462

Query: 121 ELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMIIALFFFYRD 180
            L    L     L + +  F+       + RF  +    +L      ++M          
Sbjct: 463 -LALIVLWTWAWLAMFTRVFMGGYFSKSLVRFVIQMSSWWLGAAFIFMYMWTLSVINAVH 521

Query: 181 GFSISQQLDSLGEHLF---PAYWKKISRIVPKVIRSTFLGMTIIAIGEGLVLGSAYWLAG 237
             + +  +     H         ++I         +   G    +    L+      L  
Sbjct: 522 RATTAATVSQWYFHRNAGPATPSREIVTAALGHATTIIFGSICQSTLLSLL--IRAPLLF 579

Query: 238 VPSHVALGVITAIMAMIPGGAPISFTAVSIYLLIKGNIFNAT 279
           +P  +   +       IP         ++I      +   A 
Sbjct: 580 LPRRIGGAITNLAGFWIPTPIVALTNPLTITYSAIHSQSLAV 621


>gi|229818198|ref|ZP_04448480.1| hypothetical protein BIFANG_03495 [Bifidobacterium angulatum DSM
           20098]
 gi|229784449|gb|EEP20563.1| hypothetical protein BIFANG_03495 [Bifidobacterium angulatum DSM
           20098]
          Length = 726

 Score = 35.7 bits (81), Expect = 9.8,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 58/256 (22%), Gaps = 15/256 (5%)

Query: 30  FFAPVLSALIIGFTSWPIYSSFISKKEESSTFLAVIATVSVMCLFIVPLLFLFYYGMLEM 89
            F P+L A ++      +      KK    +   V      M +      FL     +  
Sbjct: 281 VFVPLLMAAVLAVVYHGL------KKIIPESVQLVFVPFFCMIIVGALTAFLIGPLGVWA 334

Query: 90  KELVSKVVLANQHGIPVPRWLSDIPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFI 149
              +   +       P           +     +   L     L  L    + T G DFI
Sbjct: 335 GNELGIGLSWMNTHAPFV-----FAIIIPLLYPFLVPLGLHWPLNALMIMNINTLGYDFI 389

Query: 150 PRFASRFGMIFLDYCLSIIFMIIALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPK 209
                 +          ++F+ +          S+      L   +       I      
Sbjct: 390 QGPMGTWNFACFGATAGVLFLSMRDKDPVMRQTSLGALAAGLLGGVSEPSLYGIHLRYKM 449

Query: 210 VIRSTFLGMTIIAIGEGLVLGSAYWLAG----VPSHVALGVITAIMAMIPGGAPISFTAV 265
           V +   +G     +   ++             V            +  IP    +    V
Sbjct: 450 VYKRMLVGCATGGVVIAILGWLFPSTVASGQVVHGVTTTAFAFTSLLTIPVFNQMWVYGV 509

Query: 266 SIYLLIKGNIFNATCL 281
           SI      +       
Sbjct: 510 SIAAAFIVSFLMVAMF 525


>gi|227536521|ref|ZP_03966570.1| Na+/H+ antiporter [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243598|gb|EEI93613.1| Na+/H+ antiporter [Sphingobacterium spiritivorum ATCC 33300]
          Length = 709

 Score = 35.7 bits (81), Expect = 10.0,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 70/300 (23%), Gaps = 21/300 (7%)

Query: 10  GIMRWMIMFIILVSLYFLKGFFAPVLSALIIGFTSWPIY--SSFISKKEESSTFLAVIAT 67
            ++  +++FIIL+S   L+    P +  LII       +  +               +  
Sbjct: 20  VLIFALVLFIILLSPILLRPIRIPGIIGLIISGVVIGPHGLNWLEKNSAVDLFSTIGLLY 79

Query: 68  VSVMCL---------------FIVPLLFLFYYGMLEMKELVSKVVLANQHGIPVPRWLSD 112
           +  +                              +        +       + +    + 
Sbjct: 80  IMFIAGLELDMNEFKKTKHKSIWFGFFTFIIPIAIGFPVCHYILDYGILSSLLIASMFAT 139

Query: 113 IPGGMWASELWTKHLSHPQSLKILSETFLKTNGIDFIPRFASRFGMIFLDYCLSIIFMII 172
                +          +      +  T L    +  I    S      ++    +   + 
Sbjct: 140 HTLVSYPIVNSYGISKNEAVAITIGGTILTDTAVLIILAVISGATQGTINQEFWVTLGVS 199

Query: 173 ALFFFYRDGFSISQQLDSLGEHLFPAYWKKISRIVPKVIRSTFLGMT--IIAIGEGLVLG 230
              F +     I +      E +          ++  V  + F+     +  I    V G
Sbjct: 200 FAVFLFIMFGIIPRIAKWFFEKVESEKTANYIFVLAVVFFAAFMAEMAGLEPIIGAFVAG 259

Query: 231 SAYWLAGVPSHVALGVITAIMA--MIPGGAPISFTAVSIYLLIKGNIFNATCLFLWGAIE 288
            A       S   +  I  I     IP         V + +L+ G         L     
Sbjct: 260 LALNKLIPHSSALMNRIEFIGNAIFIPFFLISVGMIVDVSVLMHGPTALIVAFTLTIVAV 319


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.316    0.141    0.332 

Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,614,120,620
Number of Sequences: 13984884
Number of extensions: 177915816
Number of successful extensions: 3004741
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 12263
Number of HSP's successfully gapped in prelim test: 123862
Number of HSP's that attempted gapping in prelim test: 2694456
Number of HSP's gapped (non-prelim): 358624
length of query: 360
length of database: 4,792,584,752
effective HSP length: 140
effective length of query: 220
effective length of database: 2,834,700,992
effective search space: 623634218240
effective search space used: 623634218240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 82 (36.1 bits)